Query 020533
Match_columns 325
No_of_seqs 288 out of 3379
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 6.3E-53 1.4E-57 396.6 19.1 296 8-323 2-323 (531)
2 COG2072 TrkA Predicted flavopr 100.0 2.9E-43 6.2E-48 326.1 26.2 304 5-322 6-336 (443)
3 PLN02172 flavin-containing mon 100.0 1.1E-39 2.3E-44 303.5 26.3 202 6-219 9-237 (461)
4 KOG1399 Flavin-containing mono 100.0 1.1E-38 2.4E-43 291.5 21.7 200 7-217 6-217 (448)
5 PF13738 Pyr_redox_3: Pyridine 100.0 1.8E-34 4E-39 242.3 12.8 191 11-222 1-203 (203)
6 TIGR01292 TRX_reduct thioredox 99.9 5.4E-24 1.2E-28 189.3 23.8 175 8-220 1-175 (300)
7 PRK10262 thioredoxin reductase 99.9 5.3E-24 1.1E-28 191.2 23.6 177 5-220 4-180 (321)
8 COG0492 TrxB Thioredoxin reduc 99.9 1.9E-22 4.1E-27 177.3 22.9 173 7-219 3-176 (305)
9 PRK15317 alkyl hydroperoxide r 99.9 1.6E-22 3.4E-27 192.5 20.6 176 6-220 210-385 (517)
10 PF13434 K_oxygenase: L-lysine 99.9 7E-23 1.5E-27 183.8 14.1 207 7-230 2-235 (341)
11 TIGR03140 AhpF alkyl hydropero 99.9 1.7E-21 3.7E-26 185.2 24.0 175 6-219 211-385 (515)
12 TIGR03143 AhpF_homolog putativ 99.9 9E-22 1.9E-26 188.5 20.0 174 7-220 4-177 (555)
13 PRK05249 soluble pyridine nucl 99.9 7.5E-22 1.6E-26 185.8 18.6 201 6-231 4-219 (461)
14 PRK06416 dihydrolipoamide dehy 99.9 1.8E-21 4E-26 183.2 19.1 196 6-230 3-215 (462)
15 PLN02507 glutathione reductase 99.9 1.8E-21 3.8E-26 184.0 17.6 197 7-230 25-246 (499)
16 TIGR01421 gluta_reduc_1 glutat 99.9 3.5E-21 7.6E-26 180.2 16.2 192 7-231 2-210 (450)
17 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.4E-21 3E-26 180.0 13.2 206 6-238 3-224 (454)
18 PRK06116 glutathione reductase 99.9 4.1E-21 8.9E-26 180.2 16.5 188 6-227 3-207 (450)
19 TIGR01424 gluta_reduc_2 glutat 99.9 2E-20 4.4E-25 175.1 20.7 190 7-228 2-207 (446)
20 PRK07251 pyridine nucleotide-d 99.9 2.4E-20 5.1E-25 174.5 20.9 185 7-230 3-200 (438)
21 PRK14694 putative mercuric red 99.9 2.3E-20 5E-25 175.8 19.6 198 5-232 4-222 (468)
22 PRK08010 pyridine nucleotide-d 99.9 5.4E-21 1.2E-25 178.9 13.9 193 7-232 3-203 (441)
23 PRK14727 putative mercuric red 99.9 1E-20 2.3E-25 178.4 15.5 212 1-233 10-233 (479)
24 TIGR02053 MerA mercuric reduct 99.8 6E-21 1.3E-25 179.7 11.4 196 8-232 1-211 (463)
25 PTZ00052 thioredoxin reductase 99.8 1.2E-20 2.6E-25 178.5 13.4 202 7-231 5-225 (499)
26 TIGR01350 lipoamide_DH dihydro 99.8 1.3E-19 2.7E-24 170.8 18.7 195 7-228 1-211 (461)
27 PRK06327 dihydrolipoamide dehy 99.8 7.3E-20 1.6E-24 172.6 17.1 199 7-229 4-225 (475)
28 PRK07818 dihydrolipoamide dehy 99.8 2.7E-19 5.7E-24 168.6 20.4 203 7-231 4-216 (466)
29 PRK05976 dihydrolipoamide dehy 99.8 4.4E-20 9.5E-25 174.1 14.7 205 6-234 3-227 (472)
30 PRK06467 dihydrolipoamide dehy 99.8 5E-20 1.1E-24 173.4 14.8 203 7-236 4-223 (471)
31 PRK06370 mercuric reductase; V 99.8 3.8E-20 8.3E-25 174.2 13.7 195 7-232 5-216 (463)
32 PRK13748 putative mercuric red 99.8 7E-20 1.5E-24 176.5 15.2 202 7-234 98-316 (561)
33 PRK06292 dihydrolipoamide dehy 99.8 4.4E-20 9.6E-25 173.8 13.1 203 7-235 3-217 (460)
34 PRK04965 NADH:flavorubredoxin 99.8 1.3E-19 2.8E-24 166.3 15.6 168 8-224 3-178 (377)
35 PRK13512 coenzyme A disulfide 99.8 6.4E-19 1.4E-23 164.6 20.4 178 8-228 2-189 (438)
36 PRK12831 putative oxidoreducta 99.8 6.1E-20 1.3E-24 172.1 13.5 171 5-226 138-321 (464)
37 TIGR01438 TGR thioredoxin and 99.8 3.5E-19 7.5E-24 167.9 18.7 199 7-232 2-224 (484)
38 PRK12779 putative bifunctional 99.8 1.6E-19 3.4E-24 180.7 16.5 169 6-227 305-488 (944)
39 TIGR02374 nitri_red_nirB nitri 99.8 1.2E-19 2.7E-24 179.8 14.7 170 10-225 1-178 (785)
40 TIGR01423 trypano_reduc trypan 99.8 5.1E-19 1.1E-23 166.4 17.5 203 6-232 2-235 (486)
41 PRK14989 nitrite reductase sub 99.8 2.8E-19 6.1E-24 177.3 16.4 171 8-225 4-183 (847)
42 PRK07845 flavoprotein disulfid 99.8 3.9E-18 8.5E-23 160.5 22.9 202 8-231 2-221 (466)
43 PTZ00058 glutathione reductase 99.8 4.5E-19 9.7E-24 168.7 16.5 204 6-234 47-284 (561)
44 PRK06115 dihydrolipoamide dehy 99.8 6E-19 1.3E-23 166.0 17.1 201 7-232 3-219 (466)
45 PRK09754 phenylpropionate diox 99.8 3.6E-19 7.8E-24 164.3 15.2 171 8-224 4-181 (396)
46 PRK09564 coenzyme A disulfide 99.8 1.6E-18 3.4E-23 162.6 18.9 176 9-224 2-186 (444)
47 PTZ00318 NADH dehydrogenase-li 99.8 4.4E-19 9.5E-24 165.0 14.8 182 6-224 9-224 (424)
48 COG1252 Ndh NADH dehydrogenase 99.8 2.5E-19 5.5E-24 161.3 12.3 223 7-323 3-253 (405)
49 TIGR01316 gltA glutamate synth 99.8 6E-19 1.3E-23 165.0 14.0 165 6-224 132-310 (449)
50 PLN02546 glutathione reductase 99.8 1.4E-19 3.1E-24 172.1 9.8 195 7-233 79-298 (558)
51 PRK07846 mycothione reductase; 99.8 1.4E-18 2.9E-23 162.7 15.6 197 7-230 1-209 (451)
52 KOG0404 Thioredoxin reductase 99.8 4.4E-18 9.5E-23 137.7 14.8 177 7-221 8-192 (322)
53 PRK09853 putative selenate red 99.8 2.9E-18 6.2E-23 169.7 16.3 171 6-232 538-716 (1019)
54 PTZ00153 lipoamide dehydrogena 99.8 1.4E-18 3.1E-23 167.5 11.7 210 6-234 115-359 (659)
55 PRK12778 putative bifunctional 99.8 2.8E-18 6.1E-23 170.1 13.7 169 6-227 430-612 (752)
56 PRK06912 acoL dihydrolipoamide 99.8 5.8E-18 1.3E-22 159.1 14.6 197 9-232 2-215 (458)
57 PRK11749 dihydropyrimidine deh 99.8 3.6E-18 7.8E-23 160.4 12.5 167 6-226 139-314 (457)
58 KOG0405 Pyridine nucleotide-di 99.8 9.4E-18 2E-22 144.1 13.2 219 3-241 16-243 (478)
59 PLN02852 ferredoxin-NADP+ redu 99.8 1.1E-17 2.3E-22 156.1 14.3 170 6-228 25-229 (491)
60 PRK12770 putative glutamate sy 99.8 1.6E-17 3.6E-22 150.9 14.3 176 4-220 15-207 (352)
61 COG3634 AhpF Alkyl hydroperoxi 99.8 1.2E-17 2.7E-22 143.4 12.5 177 6-219 210-387 (520)
62 PRK12814 putative NADPH-depend 99.7 8.8E-18 1.9E-22 163.6 13.1 171 6-230 192-368 (652)
63 PRK12775 putative trifunctiona 99.7 1.8E-17 4E-22 167.3 15.0 170 6-227 429-613 (1006)
64 TIGR03169 Nterm_to_SelD pyridi 99.7 5.6E-17 1.2E-21 148.3 14.3 168 9-224 1-187 (364)
65 COG3486 IucD Lysine/ornithine 99.7 9.7E-17 2.1E-21 141.3 14.7 204 6-231 4-235 (436)
66 KOG1335 Dihydrolipoamide dehyd 99.7 5.7E-17 1.2E-21 141.0 12.9 215 6-240 38-264 (506)
67 TIGR03452 mycothione_red mycot 99.7 7.8E-17 1.7E-21 151.0 15.0 192 7-229 2-211 (452)
68 TIGR03315 Se_ygfK putative sel 99.7 5.6E-17 1.2E-21 161.3 14.2 169 7-231 537-713 (1012)
69 PRK12769 putative oxidoreducta 99.7 1.1E-16 2.5E-21 156.4 15.4 170 6-228 326-511 (654)
70 TIGR01372 soxA sarcosine oxida 99.7 7.2E-16 1.6E-20 156.5 20.7 176 7-219 163-351 (985)
71 TIGR01318 gltD_gamma_fam gluta 99.7 4E-16 8.7E-21 146.6 15.6 169 6-228 140-325 (467)
72 PRK12810 gltD glutamate syntha 99.7 1.2E-16 2.5E-21 150.7 11.4 159 6-218 142-314 (471)
73 KOG4716 Thioredoxin reductase 99.7 3.1E-15 6.8E-20 128.3 17.0 209 6-237 18-247 (503)
74 PRK12809 putative oxidoreducta 99.7 8.7E-16 1.9E-20 149.6 15.4 169 6-228 309-494 (639)
75 KOG1336 Monodehydroascorbate/f 99.7 2.3E-15 4.9E-20 135.2 15.1 170 7-225 74-251 (478)
76 PRK09897 hypothetical protein; 99.7 3.6E-15 7.7E-20 140.8 17.0 190 8-220 2-246 (534)
77 TIGR01317 GOGAT_sm_gam glutama 99.6 3.6E-15 7.9E-20 140.7 14.8 162 6-220 142-318 (485)
78 PRK13984 putative oxidoreducta 99.6 5.6E-15 1.2E-19 143.5 14.0 157 6-216 282-454 (604)
79 PTZ00188 adrenodoxin reductase 99.6 3.8E-14 8.1E-19 130.6 15.0 44 6-49 38-82 (506)
80 PRK06567 putative bifunctional 99.6 1.5E-14 3.3E-19 141.9 12.7 39 6-44 382-420 (1028)
81 PRK12771 putative glutamate sy 99.6 1.8E-14 3.9E-19 138.7 13.0 167 6-227 136-309 (564)
82 COG4529 Uncharacterized protei 99.6 2.1E-13 4.7E-18 123.4 18.7 199 8-225 2-235 (474)
83 TIGR03385 CoA_CoA_reduc CoA-di 99.6 5.7E-14 1.2E-18 131.1 15.2 158 21-220 1-171 (427)
84 COG0493 GltD NADPH-dependent g 99.5 9.5E-14 2.1E-18 128.5 11.4 158 7-218 123-295 (457)
85 COG1251 NirB NAD(P)H-nitrite r 99.5 7.4E-13 1.6E-17 124.7 14.3 175 7-227 3-185 (793)
86 COG2081 Predicted flavoprotein 99.5 1.8E-13 3.9E-18 121.0 9.2 135 7-153 3-171 (408)
87 PF13454 NAD_binding_9: FAD-NA 99.5 1.1E-12 2.5E-17 105.0 12.9 126 11-147 1-155 (156)
88 KOG1800 Ferredoxin/adrenodoxin 99.4 7.3E-13 1.6E-17 115.6 10.5 165 4-221 17-216 (468)
89 KOG2495 NADH-dehydrogenase (ub 99.4 3.7E-12 8E-17 113.0 13.0 203 5-240 53-285 (491)
90 PF03486 HI0933_like: HI0933-l 99.4 1.7E-12 3.6E-17 119.2 10.4 134 8-152 1-169 (409)
91 TIGR02032 GG-red-SF geranylger 99.4 6E-12 1.3E-16 111.4 12.4 128 8-149 1-148 (295)
92 PRK06847 hypothetical protein; 99.4 5E-11 1.1E-15 109.4 17.6 134 7-152 4-166 (375)
93 TIGR02023 BchP-ChlP geranylger 99.3 2.2E-11 4.8E-16 112.3 14.9 135 8-150 1-156 (388)
94 PRK08244 hypothetical protein; 99.3 4.1E-11 8.8E-16 114.0 16.4 134 7-149 2-159 (493)
95 KOG0399 Glutamate synthase [Am 99.3 4E-12 8.7E-17 123.4 9.2 158 6-211 1784-1949(2142)
96 PRK06183 mhpA 3-(3-hydroxyphen 99.3 5.1E-11 1.1E-15 114.5 16.7 138 6-151 9-176 (538)
97 TIGR01790 carotene-cycl lycope 99.3 3.8E-11 8.1E-16 110.8 14.7 129 9-149 1-141 (388)
98 PRK04176 ribulose-1,5-biphosph 99.3 1.9E-11 4.1E-16 105.8 11.6 137 7-149 25-173 (257)
99 PF01494 FAD_binding_3: FAD bi 99.3 1.3E-11 2.7E-16 112.1 10.4 135 8-150 2-173 (356)
100 PRK10157 putative oxidoreducta 99.3 6.3E-11 1.4E-15 110.5 15.0 131 7-149 5-164 (428)
101 PLN02463 lycopene beta cyclase 99.3 5.5E-11 1.2E-15 110.8 14.4 127 6-150 27-170 (447)
102 TIGR00292 thiazole biosynthesi 99.3 3.8E-11 8.3E-16 103.6 12.2 141 6-149 20-170 (254)
103 PRK08132 FAD-dependent oxidore 99.3 1.2E-10 2.7E-15 112.1 16.8 140 3-150 19-186 (547)
104 PRK06184 hypothetical protein; 99.3 1.2E-10 2.6E-15 111.1 16.4 134 7-149 3-168 (502)
105 PRK06834 hypothetical protein; 99.3 1E-10 2.2E-15 110.7 15.2 132 7-150 3-157 (488)
106 COG0644 FixC Dehydrogenases (f 99.3 6.4E-11 1.4E-15 109.5 13.2 132 7-149 3-152 (396)
107 PRK07364 2-octaprenyl-6-methox 99.3 1.3E-10 2.7E-15 108.3 15.2 137 6-150 17-182 (415)
108 PRK08013 oxidoreductase; Provi 99.3 7.7E-11 1.7E-15 109.2 13.6 133 7-150 3-169 (400)
109 PRK06126 hypothetical protein; 99.3 2.1E-10 4.5E-15 110.5 16.9 142 2-150 2-189 (545)
110 PRK07190 hypothetical protein; 99.3 1.6E-10 3.5E-15 109.2 15.8 131 7-149 5-165 (487)
111 PF07992 Pyr_redox_2: Pyridine 99.3 1.8E-12 3.9E-17 108.3 2.1 152 9-193 1-159 (201)
112 PRK08773 2-octaprenyl-3-methyl 99.2 1.3E-10 2.8E-15 107.4 14.3 134 5-150 4-170 (392)
113 PRK07494 2-octaprenyl-6-methox 99.2 9.8E-11 2.1E-15 108.0 13.2 133 6-150 6-168 (388)
114 PRK07045 putative monooxygenas 99.2 3.6E-10 7.7E-15 104.3 15.7 136 6-150 4-166 (388)
115 COG1635 THI4 Ribulose 1,5-bisp 99.2 9.1E-11 2E-15 95.5 10.0 137 7-148 30-177 (262)
116 PRK06185 hypothetical protein; 99.2 2.5E-10 5.4E-15 106.0 14.6 135 6-149 5-169 (407)
117 PRK10015 oxidoreductase; Provi 99.2 3.3E-10 7.1E-15 105.6 15.1 132 6-149 4-164 (429)
118 PRK06753 hypothetical protein; 99.2 2.7E-10 5.9E-15 104.5 14.3 127 9-150 2-153 (373)
119 COG3380 Predicted NAD/FAD-depe 99.2 8.3E-11 1.8E-15 98.6 9.6 124 8-147 2-158 (331)
120 PRK07333 2-octaprenyl-6-methox 99.2 2.3E-10 5.1E-15 106.0 13.7 131 8-150 2-168 (403)
121 PRK05714 2-octaprenyl-3-methyl 99.2 1.4E-10 2.9E-15 107.7 11.8 133 7-151 2-170 (405)
122 TIGR01988 Ubi-OHases Ubiquinon 99.2 2.2E-10 4.7E-15 105.5 13.1 131 9-150 1-164 (385)
123 TIGR02028 ChlP geranylgeranyl 99.2 5.1E-10 1.1E-14 103.5 14.9 136 8-149 1-160 (398)
124 PRK08163 salicylate hydroxylas 99.2 2.1E-10 4.6E-15 106.1 11.9 134 7-151 4-168 (396)
125 COG0654 UbiH 2-polyprenyl-6-me 99.2 3.6E-10 7.7E-15 104.2 13.3 134 7-150 2-163 (387)
126 PRK08020 ubiF 2-octaprenyl-3-m 99.2 3.1E-10 6.8E-15 104.8 12.7 133 6-150 4-170 (391)
127 PRK07608 ubiquinone biosynthes 99.2 4.1E-10 9E-15 103.8 13.1 130 7-150 5-168 (388)
128 PRK07538 hypothetical protein; 99.2 2.6E-09 5.5E-14 99.5 18.5 137 8-151 1-167 (413)
129 PRK07588 hypothetical protein; 99.2 3.2E-10 6.9E-15 104.8 12.3 132 8-152 1-161 (391)
130 PF05834 Lycopene_cycl: Lycope 99.2 5.1E-10 1.1E-14 102.6 13.5 121 9-148 1-141 (374)
131 PRK11445 putative oxidoreducta 99.2 7.2E-10 1.6E-14 100.8 14.2 132 8-150 2-158 (351)
132 PRK08294 phenol 2-monooxygenas 99.2 1.3E-09 2.9E-14 106.1 16.9 143 5-150 30-211 (634)
133 TIGR01989 COQ6 Ubiquinone bios 99.2 3.6E-10 7.9E-15 105.8 12.3 136 8-151 1-185 (437)
134 PLN00093 geranylgeranyl diphos 99.2 8.6E-10 1.9E-14 103.2 14.7 138 6-149 38-199 (450)
135 PLN02697 lycopene epsilon cycl 99.1 1.6E-09 3.5E-14 102.7 16.2 130 6-149 107-248 (529)
136 PRK06617 2-octaprenyl-6-methox 99.1 6.6E-10 1.4E-14 102.0 13.1 131 8-151 2-162 (374)
137 PRK08243 4-hydroxybenzoate 3-m 99.1 1.1E-09 2.5E-14 101.1 14.5 137 7-151 2-165 (392)
138 PRK09126 hypothetical protein; 99.1 8.1E-10 1.7E-14 102.1 13.4 132 7-150 3-168 (392)
139 TIGR00275 flavoprotein, HI0933 99.1 6.9E-10 1.5E-14 102.6 12.6 126 11-151 1-162 (400)
140 TIGR01984 UbiH 2-polyprenyl-6- 99.1 4.5E-10 9.8E-15 103.4 11.3 130 9-150 1-163 (382)
141 PRK07236 hypothetical protein; 99.1 1E-09 2.2E-14 101.2 12.4 136 1-151 1-156 (386)
142 PRK06996 hypothetical protein; 99.1 1.6E-09 3.4E-14 100.4 13.6 132 6-147 10-172 (398)
143 PF01946 Thi4: Thi4 family; PD 99.1 2.4E-10 5.2E-15 93.6 6.4 135 7-148 17-164 (230)
144 PRK05732 2-octaprenyl-6-methox 99.1 1.6E-09 3.5E-14 100.2 12.8 132 7-150 3-170 (395)
145 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 2.1E-09 4.6E-14 99.2 13.4 136 7-151 2-165 (390)
146 PRK08850 2-octaprenyl-6-methox 99.1 2.1E-09 4.5E-14 99.8 13.2 133 7-150 4-169 (405)
147 PF13450 NAD_binding_8: NAD(P) 99.1 2E-10 4.4E-15 78.0 4.6 51 12-62 1-51 (68)
148 PRK08849 2-octaprenyl-3-methyl 99.1 3.3E-09 7.2E-14 97.7 14.3 133 8-151 4-169 (384)
149 PRK06475 salicylate hydroxylas 99.1 2.8E-09 6.1E-14 98.8 13.6 135 8-151 3-169 (400)
150 TIGR03219 salicylate_mono sali 99.1 2.9E-09 6.3E-14 99.1 13.8 128 9-150 2-160 (414)
151 COG0446 HcaD Uncharacterized N 99.1 1.4E-09 3.1E-14 100.8 11.6 168 10-227 1-176 (415)
152 PF01266 DAO: FAD dependent ox 99.0 8.4E-10 1.8E-14 100.2 9.4 60 78-150 144-204 (358)
153 TIGR01813 flavo_cyto_c flavocy 99.0 1E-08 2.2E-13 96.2 15.9 136 9-150 1-193 (439)
154 PRK05868 hypothetical protein; 99.0 9.9E-09 2.1E-13 94.1 14.8 132 8-152 2-163 (372)
155 PRK13369 glycerol-3-phosphate 99.0 1.7E-08 3.6E-13 96.2 15.3 64 79-150 153-216 (502)
156 PF00070 Pyr_redox: Pyridine n 99.0 1E-08 2.2E-13 72.2 10.4 79 9-124 1-79 (80)
157 PRK12266 glpD glycerol-3-phosp 99.0 1.7E-08 3.7E-13 96.2 15.2 63 80-149 154-216 (508)
158 PLN02661 Putative thiazole syn 99.0 4.4E-09 9.6E-14 93.6 10.4 138 7-148 92-243 (357)
159 PF12831 FAD_oxidored: FAD dep 99.0 3.5E-10 7.5E-15 105.5 3.5 131 9-147 1-148 (428)
160 PRK06481 fumarate reductase fl 99.0 3.7E-08 8E-13 93.9 17.1 39 6-44 60-98 (506)
161 TIGR01789 lycopene_cycl lycope 98.9 9.5E-09 2.1E-13 94.0 12.3 132 9-162 1-149 (370)
162 PRK11259 solA N-methyltryptoph 98.9 1E-08 2.2E-13 94.1 12.6 64 78-154 146-209 (376)
163 TIGR01377 soxA_mon sarcosine o 98.9 1E-08 2.2E-13 94.3 12.4 59 79-150 143-201 (380)
164 PRK11728 hydroxyglutarate oxid 98.9 1E-08 2.3E-13 94.7 12.5 58 79-149 147-204 (393)
165 PLN02985 squalene monooxygenas 98.9 4E-08 8.6E-13 93.6 15.6 138 6-150 42-209 (514)
166 PRK05192 tRNA uridine 5-carbox 98.9 2.5E-08 5.4E-13 95.0 13.5 132 6-149 3-157 (618)
167 KOG2820 FAD-dependent oxidored 98.9 1.8E-08 3.9E-13 87.3 11.3 145 1-155 1-218 (399)
168 PRK01747 mnmC bifunctional tRN 98.9 3.1E-08 6.7E-13 97.6 14.3 61 78-151 405-465 (662)
169 PRK11101 glpA sn-glycerol-3-ph 98.9 2.5E-08 5.4E-13 95.8 13.3 37 6-42 5-41 (546)
170 PTZ00383 malate:quinone oxidor 98.9 2.4E-08 5.2E-13 94.2 12.5 62 79-150 209-274 (497)
171 PF00890 FAD_binding_2: FAD bi 98.9 2.9E-08 6.2E-13 92.6 13.0 136 9-150 1-204 (417)
172 PRK13339 malate:quinone oxidor 98.9 5.5E-08 1.2E-12 91.6 14.7 39 5-43 4-44 (497)
173 PRK07121 hypothetical protein; 98.9 9.4E-08 2E-12 91.0 16.5 38 7-44 20-57 (492)
174 PRK08274 tricarballylate dehyd 98.9 1.3E-07 2.8E-12 89.4 17.3 135 6-149 3-192 (466)
175 PRK12409 D-amino acid dehydrog 98.9 8.7E-08 1.9E-12 89.1 15.5 64 80-150 196-259 (410)
176 PLN02927 antheraxanthin epoxid 98.8 4.2E-08 9E-13 94.9 12.9 131 6-150 80-249 (668)
177 KOG2415 Electron transfer flav 98.8 3.2E-08 6.9E-13 88.0 10.9 145 1-148 70-255 (621)
178 COG0579 Predicted dehydrogenas 98.8 1.8E-08 3.9E-13 92.1 9.2 62 79-150 151-212 (429)
179 COG0578 GlpA Glycerol-3-phosph 98.8 1.2E-07 2.7E-12 88.6 14.4 134 6-149 11-225 (532)
180 TIGR02053 MerA mercuric reduct 98.8 2.9E-07 6.3E-12 87.0 17.3 104 7-154 166-269 (463)
181 TIGR01373 soxB sarcosine oxida 98.8 8.2E-08 1.8E-12 89.2 13.2 35 6-40 29-65 (407)
182 PRK05976 dihydrolipoamide dehy 98.8 2.3E-07 5E-12 87.9 16.4 105 7-154 180-284 (472)
183 PRK08275 putative oxidoreducta 98.8 2.3E-07 5E-12 89.5 16.5 145 1-150 3-201 (554)
184 TIGR01320 mal_quin_oxido malat 98.8 8.1E-08 1.8E-12 90.7 13.0 66 79-150 176-241 (483)
185 TIGR03329 Phn_aa_oxid putative 98.8 4.4E-08 9.5E-13 92.4 11.2 60 79-152 181-240 (460)
186 TIGR00136 gidA glucose-inhibit 98.8 1.2E-07 2.5E-12 90.4 13.8 132 8-149 1-154 (617)
187 PRK04965 NADH:flavorubredoxin 98.8 1.5E-07 3.2E-12 86.6 14.2 98 7-148 141-238 (377)
188 PRK06263 sdhA succinate dehydr 98.8 1.2E-07 2.6E-12 91.3 14.0 142 1-150 1-198 (543)
189 TIGR01350 lipoamide_DH dihydro 98.8 2.8E-07 6E-12 87.1 16.1 103 7-154 170-272 (461)
190 PRK07057 sdhA succinate dehydr 98.8 2.6E-07 5.7E-12 89.6 16.2 39 6-44 11-49 (591)
191 TIGR03364 HpnW_proposed FAD de 98.8 6.8E-08 1.5E-12 88.4 11.5 34 8-41 1-34 (365)
192 PLN02464 glycerol-3-phosphate 98.8 1E-07 2.2E-12 92.9 13.2 39 6-44 70-108 (627)
193 PRK08958 sdhA succinate dehydr 98.7 3.2E-07 6.8E-12 88.9 16.0 44 1-44 1-44 (588)
194 PF06039 Mqo: Malate:quinone o 98.7 6.9E-08 1.5E-12 87.8 10.2 64 82-151 182-246 (488)
195 PRK09078 sdhA succinate dehydr 98.7 3.6E-07 7.8E-12 88.8 15.8 38 6-43 11-48 (598)
196 PF01134 GIDA: Glucose inhibit 98.7 8.3E-08 1.8E-12 86.8 10.6 125 9-147 1-150 (392)
197 PRK12839 hypothetical protein; 98.7 6.6E-07 1.4E-11 86.4 17.2 45 1-45 1-46 (572)
198 PTZ00139 Succinate dehydrogena 98.7 4.9E-07 1.1E-11 88.0 16.3 39 6-44 28-66 (617)
199 COG1249 Lpd Pyruvate/2-oxoglut 98.7 2.6E-07 5.6E-12 85.9 13.7 105 7-156 173-277 (454)
200 PRK06854 adenylylsulfate reduc 98.7 5.2E-07 1.1E-11 87.8 16.4 37 6-42 10-48 (608)
201 PLN00128 Succinate dehydrogena 98.7 4.4E-07 9.5E-12 88.5 15.8 39 6-44 49-87 (635)
202 PRK06416 dihydrolipoamide dehy 98.7 5.8E-07 1.2E-11 85.0 16.3 104 7-154 172-275 (462)
203 KOG1346 Programmed cell death 98.7 5.6E-08 1.2E-12 86.4 8.6 178 7-217 178-382 (659)
204 PRK07208 hypothetical protein; 98.7 4.4E-08 9.5E-13 93.0 8.5 53 6-58 3-55 (479)
205 PRK06912 acoL dihydrolipoamide 98.7 7.1E-07 1.5E-11 84.2 16.5 102 7-154 170-271 (458)
206 PRK07804 L-aspartate oxidase; 98.7 2.4E-07 5.2E-12 89.0 13.3 140 6-150 15-211 (541)
207 PRK05257 malate:quinone oxidor 98.7 2E-07 4.2E-12 88.3 12.3 65 81-150 183-247 (494)
208 PRK08641 sdhA succinate dehydr 98.7 6.3E-07 1.4E-11 86.9 16.0 38 7-44 3-40 (589)
209 PRK07573 sdhA succinate dehydr 98.7 6.2E-07 1.3E-11 87.7 15.8 37 7-43 35-71 (640)
210 COG1233 Phytoene dehydrogenase 98.7 2.5E-08 5.4E-13 94.5 6.0 53 7-59 3-55 (487)
211 PRK13977 myosin-cross-reactive 98.7 1.5E-06 3.3E-11 82.2 17.4 42 6-47 21-66 (576)
212 KOG0029 Amine oxidase [Seconda 98.7 3E-08 6.4E-13 93.3 5.7 39 6-44 14-52 (501)
213 PF00070 Pyr_redox: Pyridine n 98.7 7.7E-08 1.7E-12 67.7 6.4 38 188-226 1-38 (80)
214 PRK06175 L-aspartate oxidase; 98.7 2.9E-07 6.3E-12 86.0 12.1 38 6-44 3-40 (433)
215 PRK07251 pyridine nucleotide-d 98.7 4.3E-07 9.3E-12 85.2 13.3 100 7-154 157-256 (438)
216 TIGR00551 nadB L-aspartate oxi 98.6 6.6E-07 1.4E-11 85.0 14.5 134 7-150 2-190 (488)
217 PRK06452 sdhA succinate dehydr 98.6 8.7E-07 1.9E-11 85.6 15.2 136 7-149 5-198 (566)
218 PRK06370 mercuric reductase; V 98.6 7E-07 1.5E-11 84.4 14.3 104 7-154 171-274 (463)
219 PRK08401 L-aspartate oxidase; 98.6 4.1E-07 8.9E-12 85.9 12.4 35 8-42 2-36 (466)
220 PRK06327 dihydrolipoamide dehy 98.6 1.9E-06 4.1E-11 81.7 17.0 105 7-154 183-287 (475)
221 PRK12842 putative succinate de 98.6 6.2E-07 1.3E-11 86.9 13.9 39 6-44 8-46 (574)
222 PRK09754 phenylpropionate diox 98.6 3.5E-07 7.5E-12 84.7 11.6 96 7-147 144-239 (396)
223 PRK00711 D-amino acid dehydrog 98.6 4.1E-07 8.9E-12 84.8 12.0 33 9-41 2-34 (416)
224 COG1252 Ndh NADH dehydrogenase 98.6 4.5E-07 9.9E-12 82.5 11.8 134 8-197 156-302 (405)
225 PLN02815 L-aspartate oxidase 98.6 8.7E-07 1.9E-11 85.7 14.4 37 7-44 29-65 (594)
226 COG0665 DadA Glycine/D-amino a 98.6 2.7E-07 5.8E-12 85.0 10.5 38 6-43 3-40 (387)
227 PRK07818 dihydrolipoamide dehy 98.6 1.6E-06 3.4E-11 82.1 15.9 105 7-154 172-276 (466)
228 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.3E-06 2.9E-11 84.5 15.4 36 9-44 1-36 (566)
229 PRK05249 soluble pyridine nucl 98.6 7.5E-07 1.6E-11 84.2 13.2 100 7-153 175-274 (461)
230 KOG2755 Oxidoreductase [Genera 98.6 1.2E-07 2.5E-12 79.5 6.7 155 9-224 1-169 (334)
231 PRK12835 3-ketosteroid-delta-1 98.6 1.7E-06 3.8E-11 83.7 15.9 39 6-44 10-48 (584)
232 PRK07803 sdhA succinate dehydr 98.6 1.4E-06 3E-11 85.2 15.1 37 7-43 8-44 (626)
233 PRK06134 putative FAD-binding 98.6 2.9E-06 6.3E-11 82.3 17.2 41 5-45 10-50 (581)
234 PRK06115 dihydrolipoamide dehy 98.6 1.5E-06 3.3E-11 82.1 14.8 105 7-153 174-278 (466)
235 PRK12837 3-ketosteroid-delta-1 98.6 3.1E-06 6.6E-11 81.0 16.9 43 1-44 1-43 (513)
236 PRK06116 glutathione reductase 98.6 9.8E-07 2.1E-11 83.1 13.2 102 7-154 167-268 (450)
237 PRK09077 L-aspartate oxidase; 98.6 1.7E-06 3.6E-11 83.2 14.7 40 4-44 5-44 (536)
238 PF04820 Trp_halogenase: Trypt 98.6 8.7E-08 1.9E-12 89.9 5.8 60 78-148 151-210 (454)
239 PTZ00367 squalene epoxidase; P 98.6 8.8E-07 1.9E-11 85.1 12.7 35 6-40 32-66 (567)
240 PRK05945 sdhA succinate dehydr 98.6 8.9E-07 1.9E-11 85.8 12.8 38 7-44 3-42 (575)
241 PRK07233 hypothetical protein; 98.6 2.4E-07 5.1E-12 86.7 8.6 41 9-49 1-41 (434)
242 PRK08205 sdhA succinate dehydr 98.5 2.6E-06 5.7E-11 82.7 15.9 38 6-44 4-41 (583)
243 PRK12845 3-ketosteroid-delta-1 98.5 4E-06 8.6E-11 80.8 16.9 40 6-46 15-54 (564)
244 PRK07843 3-ketosteroid-delta-1 98.5 4.5E-06 9.8E-11 80.6 17.2 44 1-44 1-44 (557)
245 PTZ00306 NADH-dependent fumara 98.5 2.4E-06 5.3E-11 88.9 16.3 40 6-45 408-447 (1167)
246 PRK08255 salicylyl-CoA 5-hydro 98.5 2.9E-07 6.3E-12 91.9 9.1 113 9-150 2-142 (765)
247 KOG1335 Dihydrolipoamide dehyd 98.5 2.5E-06 5.5E-11 75.4 13.5 152 7-209 211-367 (506)
248 PRK09231 fumarate reductase fl 98.5 1.5E-06 3.3E-11 84.1 13.4 39 6-44 3-43 (582)
249 PRK06292 dihydrolipoamide dehy 98.5 3.9E-06 8.4E-11 79.3 15.8 103 7-154 169-271 (460)
250 PRK07846 mycothione reductase; 98.5 3.4E-06 7.3E-11 79.4 15.1 100 7-154 166-265 (451)
251 TIGR01424 gluta_reduc_2 glutat 98.5 1.5E-06 3.3E-11 81.7 12.8 100 7-153 166-265 (446)
252 TIGR01176 fum_red_Fp fumarate 98.5 4.2E-06 9.1E-11 81.0 16.0 38 7-44 3-42 (580)
253 PRK06069 sdhA succinate dehydr 98.5 3.1E-06 6.8E-11 82.1 15.2 38 7-44 5-45 (577)
254 COG0562 Glf UDP-galactopyranos 98.5 4.6E-07 1E-11 78.3 7.9 84 8-109 2-87 (374)
255 TIGR01811 sdhA_Bsu succinate d 98.5 3.9E-06 8.5E-11 81.6 15.4 33 10-42 1-33 (603)
256 PRK07395 L-aspartate oxidase; 98.5 1.2E-06 2.6E-11 84.3 11.7 39 5-44 7-45 (553)
257 TIGR00562 proto_IX_ox protopor 98.5 4E-07 8.6E-12 86.0 8.3 50 7-56 2-55 (462)
258 KOG2614 Kynurenine 3-monooxyge 98.5 1.3E-06 2.7E-11 78.3 10.7 36 8-43 3-38 (420)
259 PRK11883 protoporphyrinogen ox 98.5 1.8E-07 3.8E-12 88.1 5.7 41 8-48 1-43 (451)
260 PRK08071 L-aspartate oxidase; 98.5 2E-06 4.2E-11 82.2 12.8 37 7-44 3-39 (510)
261 PLN02676 polyamine oxidase 98.5 2.7E-07 5.8E-12 87.4 6.8 50 6-55 25-75 (487)
262 PLN02507 glutathione reductase 98.5 2.4E-06 5.2E-11 81.3 13.2 101 7-154 203-303 (499)
263 PRK09564 coenzyme A disulfide 98.5 1.8E-06 3.9E-11 81.2 12.2 96 7-147 149-244 (444)
264 PLN02576 protoporphyrinogen ox 98.5 3.2E-07 6.9E-12 87.5 7.0 42 6-47 11-53 (496)
265 PRK06467 dihydrolipoamide dehy 98.5 3.5E-06 7.5E-11 79.8 13.9 104 7-154 174-277 (471)
266 TIGR01421 gluta_reduc_1 glutat 98.5 3E-06 6.6E-11 79.7 13.4 103 7-154 166-268 (450)
267 PRK07845 flavoprotein disulfid 98.5 2.5E-06 5.4E-11 80.7 12.9 101 7-154 177-277 (466)
268 PRK14727 putative mercuric red 98.4 3.6E-06 7.8E-11 79.9 13.7 98 7-153 188-285 (479)
269 COG1232 HemY Protoporphyrinoge 98.4 3.2E-07 6.9E-12 84.7 6.2 78 9-103 2-81 (444)
270 TIGR02733 desat_CrtD C-3',4' d 98.4 3.3E-07 7.2E-12 87.3 6.6 40 8-47 2-41 (492)
271 PRK08010 pyridine nucleotide-d 98.4 3.2E-06 7E-11 79.4 13.1 99 7-153 158-256 (441)
272 PRK12844 3-ketosteroid-delta-1 98.4 8.1E-06 1.8E-10 78.8 16.0 40 6-45 5-44 (557)
273 PLN02268 probable polyamine ox 98.4 2.6E-07 5.6E-12 86.7 5.6 40 8-47 1-40 (435)
274 PRK14694 putative mercuric red 98.4 9.8E-06 2.1E-10 76.7 16.2 98 7-153 178-275 (468)
275 PRK12416 protoporphyrinogen ox 98.4 5.7E-07 1.2E-11 85.0 7.8 42 8-49 2-49 (463)
276 PRK12843 putative FAD-binding 98.4 1E-05 2.2E-10 78.6 16.1 40 7-46 16-55 (578)
277 PRK08626 fumarate reductase fl 98.4 8.1E-06 1.7E-10 80.1 15.6 37 7-43 5-41 (657)
278 TIGR03385 CoA_CoA_reduc CoA-di 98.4 4E-06 8.7E-11 78.4 12.5 99 7-153 137-235 (427)
279 PRK13512 coenzyme A disulfide 98.4 2.5E-06 5.5E-11 80.0 11.1 96 7-153 148-243 (438)
280 COG0446 HcaD Uncharacterized N 98.4 5.9E-06 1.3E-10 76.6 13.4 98 8-147 137-235 (415)
281 TIGR03452 mycothione_red mycot 98.4 4.1E-06 8.9E-11 78.9 12.4 99 7-153 169-267 (452)
282 PRK13748 putative mercuric red 98.4 4.9E-06 1.1E-10 80.6 13.0 99 7-154 270-368 (561)
283 KOG0685 Flavin-containing amin 98.4 4.4E-07 9.5E-12 82.4 5.2 43 6-48 20-63 (498)
284 TIGR02734 crtI_fam phytoene de 98.4 4.2E-07 9.1E-12 86.8 5.5 38 10-47 1-38 (502)
285 TIGR01438 TGR thioredoxin and 98.4 9E-06 1.9E-10 77.2 14.1 101 8-153 181-281 (484)
286 TIGR02730 carot_isom carotene 98.4 5.6E-07 1.2E-11 85.7 6.0 41 8-48 1-41 (493)
287 PLN02568 polyamine oxidase 98.3 6.5E-07 1.4E-11 85.6 6.1 42 7-48 5-51 (539)
288 COG1148 HdrA Heterodisulfide r 98.3 1.2E-06 2.5E-11 79.7 7.1 39 7-45 124-162 (622)
289 PRK14989 nitrite reductase sub 98.3 4.8E-06 1E-10 83.7 12.2 103 7-153 145-247 (847)
290 PTZ00058 glutathione reductase 98.3 7.8E-06 1.7E-10 78.6 13.0 103 7-154 237-339 (561)
291 COG0445 GidA Flavin-dependent 98.3 1.5E-06 3.3E-11 80.3 7.7 132 7-148 4-157 (621)
292 TIGR01423 trypano_reduc trypan 98.3 7.9E-06 1.7E-10 77.5 12.8 101 7-153 187-290 (486)
293 KOG2404 Fumarate reductase, fl 98.3 5.1E-06 1.1E-10 71.9 10.3 137 9-150 11-207 (477)
294 TIGR00031 UDP-GALP_mutase UDP- 98.3 9.6E-07 2.1E-11 80.4 6.1 41 8-48 2-42 (377)
295 PTZ00153 lipoamide dehydrogena 98.3 2.5E-05 5.4E-10 76.3 15.9 110 7-154 312-430 (659)
296 TIGR02061 aprA adenosine phosp 98.3 2.1E-05 4.6E-10 76.3 15.1 33 9-41 1-37 (614)
297 PRK13800 putative oxidoreducta 98.3 2.2E-05 4.7E-10 80.0 15.7 35 7-41 13-47 (897)
298 PTZ00052 thioredoxin reductase 98.3 1.3E-05 2.9E-10 76.3 13.3 99 8-154 183-281 (499)
299 COG3349 Uncharacterized conser 98.3 1.3E-06 2.8E-11 80.7 6.0 41 8-48 1-44 (485)
300 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 2.6E-06 5.6E-11 78.5 8.0 36 8-43 1-36 (433)
301 COG1053 SdhA Succinate dehydro 98.3 1.2E-05 2.6E-10 77.0 12.7 41 4-44 3-43 (562)
302 COG1231 Monoamine oxidase [Ami 98.3 1.2E-06 2.6E-11 79.5 5.5 44 1-44 1-44 (450)
303 TIGR02485 CobZ_N-term precorri 98.3 1.7E-05 3.8E-10 74.3 13.6 62 80-149 122-183 (432)
304 TIGR02374 nitri_red_nirB nitri 98.3 6.7E-06 1.5E-10 82.5 11.2 101 7-153 140-240 (785)
305 PRK07512 L-aspartate oxidase; 98.3 1.2E-05 2.6E-10 76.9 12.3 34 6-41 8-41 (513)
306 KOG1298 Squalene monooxygenase 98.2 1.5E-05 3.2E-10 70.7 11.1 161 6-180 44-238 (509)
307 PTZ00318 NADH dehydrogenase-li 98.2 2.8E-05 6.2E-10 72.6 13.7 92 8-148 174-279 (424)
308 PRK10262 thioredoxin reductase 98.2 2.8E-05 6E-10 69.9 12.4 105 7-153 146-250 (321)
309 PLN02546 glutathione reductase 98.2 2.5E-05 5.4E-10 75.2 12.6 101 7-153 252-352 (558)
310 PTZ00363 rab-GDP dissociation 98.2 2.2E-06 4.7E-11 79.9 5.2 43 6-48 3-45 (443)
311 TIGR02731 phytoene_desat phyto 98.2 2.4E-06 5.3E-11 80.5 5.4 37 9-45 1-37 (453)
312 KOG2852 Possible oxidoreductas 98.1 3.9E-05 8.4E-10 65.6 11.6 39 6-44 9-53 (380)
313 PLN02529 lysine-specific histo 98.1 3.6E-06 7.8E-11 82.7 5.9 42 6-47 159-200 (738)
314 TIGR01292 TRX_reduct thioredox 98.1 5.7E-05 1.2E-09 66.9 12.6 95 7-147 141-236 (300)
315 TIGR03140 AhpF alkyl hydropero 98.1 4.8E-05 1E-09 72.9 12.8 100 7-153 352-452 (515)
316 COG2907 Predicted NAD/FAD-bind 98.1 4.6E-06 9.9E-11 73.0 4.4 46 1-47 2-47 (447)
317 PF13434 K_oxygenase: L-lysine 98.0 4.1E-05 8.9E-10 69.2 10.0 130 6-147 189-339 (341)
318 PRK05335 tRNA (uracil-5-)-meth 98.0 1.5E-05 3.2E-10 73.2 7.1 35 8-42 3-37 (436)
319 KOG2853 Possible oxidoreductas 98.0 6.5E-05 1.4E-09 65.7 10.6 43 6-48 85-140 (509)
320 TIGR02732 zeta_caro_desat caro 98.0 7.2E-06 1.6E-10 77.6 5.2 36 9-44 1-36 (474)
321 PLN02328 lysine-specific histo 98.0 1E-05 2.3E-10 80.0 6.4 42 6-47 237-278 (808)
322 PRK15317 alkyl hydroperoxide r 98.0 9E-05 2E-09 71.1 11.9 99 7-153 351-451 (517)
323 PLN02487 zeta-carotene desatur 98.0 1.1E-05 2.4E-10 77.5 5.5 40 7-46 75-114 (569)
324 KOG1276 Protoporphyrinogen oxi 97.9 1.4E-05 3.1E-10 71.7 5.1 43 6-48 10-54 (491)
325 TIGR03169 Nterm_to_SelD pyridi 97.9 0.00023 4.9E-09 65.1 13.0 92 7-148 145-242 (364)
326 PLN02612 phytoene desaturase 97.9 1.7E-05 3.7E-10 76.7 5.7 39 6-44 92-130 (567)
327 PLN03000 amine oxidase 97.9 2E-05 4.3E-10 78.2 6.2 44 6-49 183-226 (881)
328 PRK12834 putative FAD-binding 97.9 1.8E-05 3.9E-10 76.4 5.6 40 6-45 3-44 (549)
329 TIGR02462 pyranose_ox pyranose 97.9 1.8E-05 3.8E-10 75.4 5.2 40 8-47 1-40 (544)
330 COG0029 NadB Aspartate oxidase 97.9 0.00018 3.8E-09 66.3 11.3 33 9-42 9-41 (518)
331 KOG1336 Monodehydroascorbate/f 97.8 0.00016 3.5E-09 66.1 10.2 107 7-157 213-319 (478)
332 KOG2311 NAD/FAD-utilizing prot 97.8 0.00011 2.3E-09 67.2 8.4 35 5-39 26-60 (679)
333 PLN02976 amine oxidase 97.8 3.1E-05 6.7E-10 79.8 5.7 43 7-49 693-735 (1713)
334 COG2509 Uncharacterized FAD-de 97.8 0.00019 4.2E-09 65.3 10.0 58 81-149 173-230 (486)
335 TIGR01316 gltA glutamate synth 97.8 0.0014 3.1E-08 61.7 16.0 34 7-40 272-305 (449)
336 KOG2665 Predicted FAD-dependen 97.7 0.00029 6.2E-09 61.2 9.9 38 6-43 47-86 (453)
337 PRK12770 putative glutamate sy 97.7 0.00065 1.4E-08 61.9 12.9 34 7-40 172-206 (352)
338 PF00732 GMC_oxred_N: GMC oxid 97.7 3.6E-05 7.9E-10 68.2 4.2 34 8-41 1-35 (296)
339 KOG0042 Glycerol-3-phosphate d 97.7 5E-05 1.1E-09 70.2 5.1 41 6-46 66-106 (680)
340 KOG2844 Dimethylglycine dehydr 97.7 0.00014 3.1E-09 68.9 8.1 61 77-149 183-243 (856)
341 PRK01438 murD UDP-N-acetylmura 97.7 0.00013 2.9E-09 69.3 8.3 34 7-40 16-49 (480)
342 PF06100 Strep_67kDa_ant: Stre 97.7 0.0017 3.6E-08 60.4 14.5 41 7-47 2-46 (500)
343 KOG3851 Sulfide:quinone oxidor 97.6 0.00024 5.1E-09 61.8 8.1 37 5-41 37-75 (446)
344 PRK12831 putative oxidoreducta 97.6 0.0028 6.1E-08 59.9 15.6 34 7-40 281-314 (464)
345 TIGR03143 AhpF_homolog putativ 97.6 0.00079 1.7E-08 65.2 11.8 35 7-41 143-177 (555)
346 TIGR01318 gltD_gamma_fam gluta 97.5 0.0065 1.4E-07 57.6 16.5 35 7-41 282-317 (467)
347 PRK12778 putative bifunctional 97.5 0.0052 1.1E-07 61.8 16.2 34 7-40 570-604 (752)
348 PRK11749 dihydropyrimidine deh 97.4 0.0022 4.7E-08 60.6 12.6 101 7-152 273-388 (457)
349 PRK02106 choline dehydrogenase 97.4 0.00017 3.7E-09 69.9 5.1 35 6-40 4-39 (560)
350 PRK05329 anaerobic glycerol-3- 97.4 0.00019 4.1E-09 66.6 5.1 34 7-40 2-35 (422)
351 PRK12769 putative oxidoreducta 97.4 0.0093 2E-07 59.0 17.0 35 7-41 468-503 (654)
352 KOG2495 NADH-dehydrogenase (ub 97.4 0.00035 7.7E-09 63.1 6.1 102 8-154 219-334 (491)
353 COG1206 Gid NAD(FAD)-utilizing 97.3 0.0002 4.2E-09 62.5 3.7 35 8-42 4-38 (439)
354 KOG3855 Monooxygenase involved 97.3 0.0047 1E-07 55.8 12.3 34 6-39 35-72 (481)
355 COG3075 GlpB Anaerobic glycero 97.3 0.00033 7.2E-09 61.2 4.6 34 7-40 2-35 (421)
356 COG2081 Predicted flavoprotein 97.3 0.00074 1.6E-08 60.8 6.7 134 187-323 4-158 (408)
357 KOG4254 Phytoene desaturase [C 97.3 0.00025 5.3E-09 64.4 3.7 40 6-45 13-52 (561)
358 PRK12814 putative NADPH-depend 97.2 0.017 3.6E-07 57.1 16.3 34 7-40 323-357 (652)
359 COG2303 BetA Choline dehydroge 97.2 0.0004 8.7E-09 66.8 4.9 40 1-40 1-40 (542)
360 TIGR01372 soxA sarcosine oxida 97.2 0.003 6.5E-08 65.3 11.3 96 7-153 317-413 (985)
361 COG3573 Predicted oxidoreducta 97.2 0.00059 1.3E-08 59.8 5.1 39 6-44 4-44 (552)
362 PRK12810 gltD glutamate syntha 97.2 0.0053 1.2E-07 58.2 11.9 107 7-147 281-398 (471)
363 TIGR01317 GOGAT_sm_gam glutama 97.1 0.028 6.1E-07 53.5 16.3 35 7-41 283-318 (485)
364 KOG2960 Protein involved in th 97.1 0.00015 3.2E-09 59.3 0.3 43 7-49 76-121 (328)
365 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00077 1.7E-08 62.1 4.9 33 8-40 1-33 (419)
366 PRK12809 putative oxidoreducta 97.0 0.052 1.1E-06 53.6 16.9 35 7-41 451-486 (639)
367 TIGR01810 betA choline dehydro 96.9 0.00077 1.7E-08 65.0 4.0 32 9-40 1-33 (532)
368 PRK12779 putative bifunctional 96.9 0.011 2.4E-07 60.6 11.9 34 7-40 447-480 (944)
369 PLN02785 Protein HOTHEAD 96.8 0.0018 4E-08 62.8 5.1 34 6-40 54-87 (587)
370 PLN02172 flavin-containing mon 96.8 0.0032 7E-08 59.4 6.5 34 7-40 204-237 (461)
371 COG3486 IucD Lysine/ornithine 96.7 0.031 6.6E-07 50.7 11.5 48 97-148 292-339 (436)
372 KOG1346 Programmed cell death 96.7 0.0061 1.3E-07 55.1 7.0 101 6-153 346-451 (659)
373 PRK09853 putative selenate red 96.6 0.042 9.2E-07 56.2 13.7 34 7-40 668-703 (1019)
374 PF00996 GDI: GDP dissociation 96.6 0.0025 5.3E-08 59.2 4.5 44 5-48 2-45 (438)
375 PRK12775 putative trifunctiona 96.6 0.12 2.6E-06 53.6 17.0 35 6-40 570-605 (1006)
376 COG0492 TrxB Thioredoxin reduc 96.5 0.037 8.1E-07 49.2 11.1 94 7-147 143-236 (305)
377 PRK13984 putative oxidoreducta 96.4 0.1 2.2E-06 51.2 14.5 31 7-37 418-454 (604)
378 PRK07066 3-hydroxybutyryl-CoA 96.3 0.0068 1.5E-07 54.2 5.3 41 1-41 1-41 (321)
379 PRK05329 anaerobic glycerol-3- 96.3 0.038 8.2E-07 51.5 10.3 95 11-149 219-318 (422)
380 PF01593 Amino_oxidase: Flavin 96.3 0.0036 7.7E-08 58.0 3.6 43 17-59 1-45 (450)
381 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0049 1.1E-07 50.4 3.9 33 9-41 1-33 (180)
382 PF01210 NAD_Gly3P_dh_N: NAD-d 96.3 0.0053 1.2E-07 49.0 4.0 32 9-40 1-32 (157)
383 KOG4716 Thioredoxin reductase 96.2 0.018 4E-07 50.8 7.2 101 8-148 199-299 (503)
384 TIGR03315 Se_ygfK putative sel 96.2 0.11 2.5E-06 53.3 13.8 34 7-40 666-701 (1012)
385 PRK12771 putative glutamate sy 96.2 0.17 3.6E-06 49.3 14.5 34 7-40 267-301 (564)
386 COG0569 TrkA K+ transport syst 96.1 0.0086 1.9E-07 50.8 4.6 34 8-41 1-34 (225)
387 PF13241 NAD_binding_7: Putati 96.0 0.0055 1.2E-07 45.1 2.9 37 183-219 4-40 (103)
388 PF00743 FMO-like: Flavin-bind 96.0 0.024 5.2E-07 54.5 7.6 35 6-40 182-216 (531)
389 KOG1238 Glucose dehydrogenase/ 96.0 0.0089 1.9E-07 57.1 4.5 38 5-42 55-93 (623)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.0082 1.8E-07 49.3 3.7 34 8-41 1-34 (185)
391 TIGR03862 flavo_PP4765 unchara 95.9 0.041 9E-07 50.3 8.6 60 79-151 84-143 (376)
392 KOG4405 GDP dissociation inhib 95.9 0.0086 1.9E-07 54.0 3.9 49 4-52 5-53 (547)
393 PRK07819 3-hydroxybutyryl-CoA 95.9 0.012 2.6E-07 51.9 4.8 34 8-41 6-39 (286)
394 KOG0405 Pyridine nucleotide-di 95.8 0.036 7.8E-07 49.2 7.0 103 6-154 188-290 (478)
395 PRK02705 murD UDP-N-acetylmura 95.8 0.011 2.5E-07 55.8 4.4 34 9-42 2-35 (459)
396 PF05834 Lycopene_cycl: Lycope 95.7 0.024 5.1E-07 52.2 6.3 34 188-221 1-36 (374)
397 PF13450 NAD_binding_8: NAD(P) 95.7 0.011 2.4E-07 39.8 3.1 29 191-219 1-29 (68)
398 PLN02463 lycopene beta cyclase 95.7 0.014 3.1E-07 54.8 4.5 38 187-224 29-66 (447)
399 PRK06129 3-hydroxyacyl-CoA deh 95.6 0.016 3.4E-07 51.8 4.4 34 8-41 3-36 (308)
400 KOG0399 Glutamate synthase [Am 95.5 0.05 1.1E-06 55.3 7.8 38 182-219 1781-1818(2142)
401 COG1251 NirB NAD(P)H-nitrite r 95.5 0.029 6.2E-07 54.5 5.9 97 7-147 145-241 (793)
402 TIGR01470 cysG_Nterm siroheme 95.4 0.029 6.2E-07 46.9 5.1 34 7-40 9-42 (205)
403 PF13241 NAD_binding_7: Putati 95.4 0.018 3.9E-07 42.4 3.5 35 6-40 6-40 (103)
404 COG1148 HdrA Heterodisulfide r 95.4 0.026 5.6E-07 52.2 5.1 34 186-219 124-157 (622)
405 PRK09260 3-hydroxybutyryl-CoA 95.4 0.021 4.6E-07 50.4 4.5 34 8-41 2-35 (288)
406 PRK05335 tRNA (uracil-5-)-meth 95.4 0.016 3.5E-07 53.6 3.7 35 187-221 3-37 (436)
407 PRK08268 3-hydroxy-acyl-CoA de 95.3 0.025 5.5E-07 54.0 5.1 41 1-41 1-41 (507)
408 PF01488 Shikimate_DH: Shikima 95.3 0.044 9.6E-07 42.5 5.5 35 6-40 11-46 (135)
409 PF01262 AlaDh_PNT_C: Alanine 95.3 0.032 6.9E-07 45.1 4.7 34 7-40 20-53 (168)
410 PF02558 ApbA: Ketopantoate re 95.2 0.032 6.9E-07 44.0 4.5 31 10-40 1-31 (151)
411 PRK07530 3-hydroxybutyryl-CoA 95.2 0.026 5.7E-07 49.9 4.4 33 8-40 5-37 (292)
412 PRK08293 3-hydroxybutyryl-CoA 95.2 0.027 6E-07 49.7 4.5 33 8-40 4-36 (287)
413 TIGR00137 gid_trmFO tRNA:m(5)U 95.2 0.019 4.1E-07 53.3 3.6 33 188-220 2-34 (433)
414 PRK06719 precorrin-2 dehydroge 95.1 0.039 8.5E-07 44.0 4.8 34 6-39 12-45 (157)
415 TIGR01470 cysG_Nterm siroheme 95.1 0.026 5.7E-07 47.1 4.0 37 183-219 6-42 (205)
416 PRK14106 murD UDP-N-acetylmura 95.1 0.035 7.6E-07 52.3 5.3 34 7-40 5-38 (450)
417 PRK06035 3-hydroxyacyl-CoA deh 95.1 0.028 6.2E-07 49.7 4.4 34 8-41 4-37 (291)
418 PTZ00188 adrenodoxin reductase 95.1 0.037 8.1E-07 52.1 5.2 36 185-220 38-74 (506)
419 PRK06719 precorrin-2 dehydroge 95.1 0.027 6E-07 44.9 3.7 35 182-216 9-43 (157)
420 PRK04148 hypothetical protein; 95.0 0.025 5.5E-07 43.5 3.3 83 7-98 17-105 (134)
421 PLN02852 ferredoxin-NADP+ redu 95.0 0.026 5.7E-07 53.5 4.0 36 185-220 25-62 (491)
422 PRK06249 2-dehydropantoate 2-r 95.0 0.047 1E-06 48.9 5.4 34 7-40 5-38 (313)
423 COG1635 THI4 Ribulose 1,5-bisp 94.9 0.034 7.4E-07 46.2 3.9 38 182-219 26-63 (262)
424 PRK06718 precorrin-2 dehydroge 94.8 0.052 1.1E-06 45.2 5.0 34 6-39 9-42 (202)
425 TIGR03197 MnmC_Cterm tRNA U-34 94.8 0.073 1.6E-06 49.0 6.4 61 78-151 132-192 (381)
426 PRK06718 precorrin-2 dehydroge 94.8 0.034 7.3E-07 46.4 3.8 36 183-218 7-42 (202)
427 PF00899 ThiF: ThiF family; I 94.8 0.05 1.1E-06 42.1 4.5 34 7-40 2-36 (135)
428 COG1004 Ugd Predicted UDP-gluc 94.8 0.039 8.4E-07 49.9 4.2 32 9-40 2-33 (414)
429 TIGR00518 alaDH alanine dehydr 94.7 0.045 9.7E-07 50.2 4.8 34 7-40 167-200 (370)
430 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.042 9.1E-07 51.2 4.6 34 8-41 4-37 (415)
431 COG3634 AhpF Alkyl hydroperoxi 94.7 0.4 8.6E-06 42.8 10.1 107 6-158 353-459 (520)
432 PRK05808 3-hydroxybutyryl-CoA 94.7 0.045 9.7E-07 48.2 4.5 34 8-41 4-37 (282)
433 PF03446 NAD_binding_2: NAD bi 94.7 0.051 1.1E-06 43.6 4.4 33 8-40 2-34 (163)
434 PLN02545 3-hydroxybutyryl-CoA 94.7 0.05 1.1E-06 48.2 4.8 34 8-41 5-38 (295)
435 PRK05708 2-dehydropantoate 2-r 94.6 0.057 1.2E-06 48.1 5.0 33 8-40 3-35 (305)
436 PRK06522 2-dehydropantoate 2-r 94.6 0.052 1.1E-06 48.2 4.7 32 9-40 2-33 (304)
437 TIGR01789 lycopene_cycl lycope 94.5 0.056 1.2E-06 49.6 4.8 32 188-219 1-34 (370)
438 PF01488 Shikimate_DH: Shikima 94.5 0.056 1.2E-06 41.9 4.1 37 183-219 9-46 (135)
439 TIGR02352 thiamin_ThiO glycine 94.4 0.18 3.9E-06 45.2 8.0 63 77-152 133-196 (337)
440 PRK09424 pntA NAD(P) transhydr 94.4 0.062 1.3E-06 51.1 5.0 35 6-40 164-198 (509)
441 PRK14619 NAD(P)H-dependent gly 94.4 0.072 1.6E-06 47.6 5.2 35 6-40 3-37 (308)
442 PRK14618 NAD(P)H-dependent gly 94.4 0.07 1.5E-06 48.1 5.2 34 7-40 4-37 (328)
443 PRK06130 3-hydroxybutyryl-CoA 94.4 0.07 1.5E-06 47.7 5.0 33 8-40 5-37 (311)
444 PRK04690 murD UDP-N-acetylmura 94.3 0.062 1.3E-06 51.0 4.7 34 7-40 8-41 (468)
445 PF02254 TrkA_N: TrkA-N domain 94.2 0.064 1.4E-06 40.1 3.9 32 10-41 1-32 (116)
446 cd00401 AdoHcyase S-adenosyl-L 94.2 0.074 1.6E-06 49.2 5.0 35 7-41 202-236 (413)
447 PRK07236 hypothetical protein; 94.2 0.054 1.2E-06 49.9 4.1 35 186-220 6-40 (386)
448 PRK12921 2-dehydropantoate 2-r 94.2 0.072 1.6E-06 47.4 4.8 30 9-38 2-31 (305)
449 PF01494 FAD_binding_3: FAD bi 94.2 0.047 1E-06 49.2 3.6 33 188-220 3-35 (356)
450 KOG3923 D-aspartate oxidase [A 94.2 0.062 1.3E-06 46.7 4.0 33 7-39 3-42 (342)
451 PRK12409 D-amino acid dehydrog 94.1 0.054 1.2E-06 50.4 4.0 33 187-219 2-34 (410)
452 PRK06567 putative bifunctional 94.1 0.061 1.3E-06 54.7 4.4 37 183-219 380-416 (1028)
453 TIGR03026 NDP-sugDHase nucleot 94.0 0.065 1.4E-06 49.9 4.3 33 9-41 2-34 (411)
454 TIGR02354 thiF_fam2 thiamine b 94.0 0.088 1.9E-06 43.8 4.6 33 7-39 21-54 (200)
455 cd01075 NAD_bind_Leu_Phe_Val_D 94.0 0.12 2.6E-06 43.0 5.4 35 6-40 27-61 (200)
456 PRK08229 2-dehydropantoate 2-r 94.0 0.085 1.8E-06 47.7 4.9 33 8-40 3-35 (341)
457 KOG0029 Amine oxidase [Seconda 93.9 0.08 1.7E-06 50.4 4.5 37 183-219 12-48 (501)
458 PRK06847 hypothetical protein; 93.8 0.07 1.5E-06 48.9 4.1 35 186-220 4-38 (375)
459 PF13478 XdhC_C: XdhC Rossmann 93.8 0.074 1.6E-06 41.2 3.6 32 10-41 1-32 (136)
460 TIGR01763 MalateDH_bact malate 93.8 0.11 2.4E-06 46.3 5.1 33 8-40 2-35 (305)
461 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.8 0.078 1.7E-06 50.6 4.4 34 8-41 6-39 (503)
462 cd05292 LDH_2 A subgroup of L- 93.8 0.099 2.2E-06 46.7 4.8 33 9-41 2-36 (308)
463 PF07992 Pyr_redox_2: Pyridine 93.7 0.065 1.4E-06 44.2 3.4 32 188-219 1-32 (201)
464 cd05311 NAD_bind_2_malic_enz N 93.7 0.12 2.6E-06 43.9 5.0 35 6-40 24-61 (226)
465 PRK08306 dipicolinate synthase 93.7 0.1 2.3E-06 46.2 4.7 34 7-40 152-185 (296)
466 PF00056 Ldh_1_N: lactate/mala 93.7 0.13 2.9E-06 40.1 4.8 32 9-40 2-36 (141)
467 cd01080 NAD_bind_m-THF_DH_Cycl 93.7 0.13 2.9E-06 41.4 4.9 34 6-39 43-77 (168)
468 PRK00094 gpsA NAD(P)H-dependen 93.7 0.093 2E-06 47.1 4.5 33 8-40 2-34 (325)
469 COG0771 MurD UDP-N-acetylmuram 93.7 0.092 2E-06 48.9 4.4 36 7-42 7-42 (448)
470 PRK00066 ldh L-lactate dehydro 93.6 0.14 3.1E-06 45.8 5.5 35 7-41 6-42 (315)
471 PRK14620 NAD(P)H-dependent gly 93.6 0.11 2.4E-06 46.8 4.7 32 9-40 2-33 (326)
472 PRK05868 hypothetical protein; 93.5 0.075 1.6E-06 48.8 3.7 34 187-220 2-35 (372)
473 COG0562 Glf UDP-galactopyranos 93.5 0.1 2.2E-06 45.9 4.2 34 187-220 2-35 (374)
474 PRK08163 salicylate hydroxylas 93.5 0.09 1.9E-06 48.6 4.2 35 186-220 4-38 (396)
475 PRK07531 bifunctional 3-hydrox 93.5 0.11 2.5E-06 49.5 5.0 34 8-41 5-38 (495)
476 PLN00093 geranylgeranyl diphos 93.4 0.18 3.8E-06 47.6 6.0 35 186-220 39-73 (450)
477 PRK03369 murD UDP-N-acetylmura 93.4 0.11 2.4E-06 49.6 4.6 34 7-40 12-45 (488)
478 PRK11883 protoporphyrinogen ox 93.4 0.086 1.9E-06 49.5 3.9 33 187-219 1-35 (451)
479 cd01080 NAD_bind_m-THF_DH_Cycl 93.3 0.15 3.2E-06 41.1 4.7 38 182-219 40-78 (168)
480 TIGR01373 soxB sarcosine oxida 93.3 0.079 1.7E-06 49.2 3.5 50 170-219 14-65 (407)
481 PF01266 DAO: FAD dependent ox 93.3 0.087 1.9E-06 47.5 3.7 31 188-218 1-31 (358)
482 TIGR02032 GG-red-SF geranylger 93.3 0.09 2E-06 46.1 3.7 32 188-219 2-33 (295)
483 PRK06753 hypothetical protein; 93.2 0.092 2E-06 48.1 3.8 33 188-220 2-34 (373)
484 PF01946 Thi4: Thi4 family; PD 93.2 0.078 1.7E-06 44.2 2.9 34 186-219 17-50 (230)
485 COG1748 LYS9 Saccharopine dehy 93.2 0.13 2.9E-06 46.9 4.7 33 8-40 2-35 (389)
486 KOG1399 Flavin-containing mono 93.2 0.09 2E-06 49.2 3.7 39 186-224 6-48 (448)
487 PF01134 GIDA: Glucose inhibit 93.2 0.08 1.7E-06 48.5 3.2 29 188-216 1-29 (392)
488 TIGR03378 glycerol3P_GlpB glyc 93.2 0.37 8.1E-06 44.7 7.6 65 78-152 260-326 (419)
489 PRK07417 arogenate dehydrogena 93.1 0.11 2.4E-06 45.6 4.0 32 9-40 2-33 (279)
490 PRK01438 murD UDP-N-acetylmura 93.1 0.12 2.6E-06 49.2 4.4 36 184-219 14-49 (480)
491 PRK01710 murD UDP-N-acetylmura 93.1 0.13 2.9E-06 48.6 4.7 34 7-40 14-47 (458)
492 PRK07233 hypothetical protein; 93.1 0.094 2E-06 48.9 3.7 32 188-219 1-32 (434)
493 TIGR02356 adenyl_thiF thiazole 93.1 0.17 3.6E-06 42.2 4.8 34 7-40 21-55 (202)
494 cd01483 E1_enzyme_family Super 93.1 0.16 3.4E-06 39.7 4.4 32 9-40 1-33 (143)
495 COG5044 MRS6 RAB proteins gera 93.0 0.19 4.1E-06 45.1 5.2 42 7-48 6-47 (434)
496 PRK05562 precorrin-2 dehydroge 93.0 0.12 2.6E-06 43.5 3.9 37 183-219 22-58 (223)
497 PRK07502 cyclohexadienyl dehyd 93.0 0.14 3.1E-06 45.6 4.6 39 1-40 1-41 (307)
498 PRK15116 sulfur acceptor prote 93.0 0.17 3.7E-06 44.0 4.8 34 7-40 30-64 (268)
499 TIGR02853 spore_dpaA dipicolin 93.0 0.15 3.3E-06 45.0 4.6 34 7-40 151-184 (287)
500 PTZ00082 L-lactate dehydrogena 93.0 0.21 4.5E-06 44.8 5.6 35 7-41 6-41 (321)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=6.3e-53 Score=396.63 Aligned_cols=296 Identities=30% Similarity=0.495 Sum_probs=189.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC---------CCCceEeecCCCccCCCCCCCCCCCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY---------SYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~---------~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (325)
++|+|||||++||++|++|.+.|+++++||+++.+||+|+.. .|+++..|+++.++.|+++|+|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999999999999853 58999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC---CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~ 155 (325)
++.++.+||++||++|+|..+|+|+++|+++++.++ .++|.|++++.. +..+ -.||+||+|||+++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999998653 368999886432 3345 67999999999999999995
Q ss_pred --CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH-HH--
Q 020533 156 --IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YL-- 230 (325)
Q Consensus 156 --~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~-~~-- 230 (325)
+||++.| +|.++||.+|+++..++||+|+|||+|+||+|+|.+++..+++|+++.|++.|++||... ..
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999753 11
Q ss_pred --------HHHHHhhCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecCC
Q 020533 231 --------GVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQN 302 (325)
Q Consensus 231 --------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~i 302 (325)
...+.+.+|..+.+.+........+ +...+|+. |... ..++.|++++++.+.|.+|+|+++++|
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~~~------~~~~~~~ind~l~~~i~~G~i~vk~~I 302 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PKHR------FFSQHPTINDELPNRIRSGRIKVKPDI 302 (531)
T ss_dssp ----------------------------------------------------------------------------EE-E
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccc-cccc------ccccccccccccccccccccccccccc
Confidence 1112223444333333322222222 23345552 4332 225678999999999999999999999
Q ss_pred eeeecCceEEeeeccee-cCCC
Q 020533 303 SQIGAQTRTELLLKTWL-GTDT 323 (325)
Q Consensus 303 ~~~~~~~~v~~~dg~~~-~~d~ 323 (325)
++|++++ |.|.||+.+ +.|+
T Consensus 303 ~~~~~~~-v~F~DGs~~e~vD~ 323 (531)
T PF00743_consen 303 KRFTENS-VIFEDGSTEEDVDV 323 (531)
T ss_dssp EEE-SSE-EEETTSEEEEE-SE
T ss_pred ccccccc-cccccccccccccc
Confidence 9999975 679999975 5774
No 2
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=326.10 Aligned_cols=304 Identities=29% Similarity=0.422 Sum_probs=239.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
...+||+|||||++||++|+.|.++|.+ ++||||++.+||+|+.++|++++++.++..+.|+++|++ +...++...++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3568999999999999999999999998 999999999999999999999999999999999999998 55677888889
Q ss_pred HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (325)
Q Consensus 84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~ 163 (325)
.+|+.++++++++..++.+++.|..++++++++.|+|++.++.. .+ +.||+||+|||.++.|++|.|+|.+.|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f- 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF- 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC-
Confidence 99999999999999999999999999999988899999998743 34 679999999999999999999999999
Q ss_pred cCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH----HHHHHHHhhCC
Q 020533 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV----YLGVVLFKYVP 239 (325)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~----~~~~~~~~~~p 239 (325)
.|.++|+++|++..+++||+|+|||+|+||+|++.+|++.|++||+++|++.+++|+... .....+...+|
T Consensus 158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (443)
T COG2072 158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALP 232 (443)
T ss_pred -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCc
Confidence 999999999999999999999999999999999999999999999999999999998764 22333334344
Q ss_pred HHHHHHHHH---HHHHHHhcC-----c-------cccCCCC-CCCCchh--hh---hccCceeeeChhhhhhhhCCceEE
Q 020533 240 FGWVDTLMV---MLSRLVYGD-----L-------SKYGIPK-PREGPFF--MK---AAYGKYPVIDAGTCEKIKSGQIQS 298 (325)
Q Consensus 240 ~~~~~~~~~---~~~~~~~~~-----~-------~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~g~v~~ 298 (325)
..+...... .+....... . .+..+.. .....+. .. ...+++...+..++..+..+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 312 (443)
T COG2072 233 AGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEV 312 (443)
T ss_pred cceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccce
Confidence 433211110 000000000 0 0000000 0000000 00 112345778889999999999999
Q ss_pred ecC-CeeeecCceEEeeecceecCC
Q 020533 299 EQQ-NSQIGAQTRTELLLKTWLGTD 322 (325)
Q Consensus 299 ~~~-i~~~~~~~~v~~~dg~~~~~d 322 (325)
++. |+.+++.+ +....++..+.|
T Consensus 313 ~~~~i~~~~~~~-~~~~~~~~~e~d 336 (443)
T COG2072 313 VTEIIDRFTEGG-ILLDSGREEEAD 336 (443)
T ss_pred eeccccccCCcc-eecCCCccccce
Confidence 999 88887764 444445545444
No 3
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.1e-39 Score=303.47 Aligned_cols=202 Identities=26% Similarity=0.439 Sum_probs=183.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------------------CCCceEeecCCCccCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL 65 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------------------~y~~~~~~~~~~~~~~ 65 (325)
..++|+|||||++||++|++|++.|++++|||+++.+||.|+.. .|++++.+.|+..+.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 45799999999999999999999999999999999999999652 4888999999999999
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533 66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (325)
Q Consensus 66 ~~~~~~~~-------~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (325)
+++|++.. .+.||++.++.+||+++++++++..+|+|+++|++++..+ +.|.|++.+..+ ...+ ..|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~ 162 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF 162 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence 99987653 3679999999999999999999998899999999998864 789999875422 1245 689
Q ss_pred CeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (325)
Q Consensus 139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~ 218 (325)
|+||+|||+++.|++|++||++.| .|.++|+..|+.+..+++|+|+|||+|+||+|+|.+|+..+.+|++++|+
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred C
Q 020533 219 P 219 (325)
Q Consensus 219 ~ 219 (325)
+
T Consensus 237 ~ 237 (461)
T PLN02172 237 S 237 (461)
T ss_pred c
Confidence 6
No 4
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-38 Score=291.47 Aligned_cols=200 Identities=35% Similarity=0.563 Sum_probs=183.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------C-CCceEeecCCCccCCCCCCCCCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPMF 77 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------~-y~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (325)
..+|+|||||+|||++|+.|.+.|+++++|||.+++||+|... . |..++++.++.++.++++|+++..+.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 4689999999999999999999999999999999999999987 5 999999999999999999999986655
Q ss_pred -CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533 78 -VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (325)
Q Consensus 78 -~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~ 156 (325)
|+..++.+||++||++|+|..+|+|+++|..++...+ +.|.|.+.+..+. ..+ ..||.|++|||++..|++|.+
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCcC
Confidence 8888999999999999999999999999988877542 7999999876431 246 789999999999977999999
Q ss_pred CC--ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEe
Q 020533 157 RG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217 (325)
Q Consensus 157 ~g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r 217 (325)
+| ++.| .|.++||.+|+.+..+++|+|+|||+|+||+|++.+++..+.+|+++.+
T Consensus 161 ~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 161 PGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred CCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 88 7799 9999999999999999999999999999999999999999999988876
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=1.8e-34 Score=242.26 Aligned_cols=191 Identities=34% Similarity=0.588 Sum_probs=138.2
Q ss_pred EEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCCCCCceEeecCCCc---cCCCCCCCC--------CCCCCCC
Q 020533 11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFP--------SSYPMFV 78 (325)
Q Consensus 11 ~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~ 78 (325)
+||||||+||++|..|.++|.+ ++|||+++.+||.|.. .++..++..+... +.++.+... .+...++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 9999999999999984 2333333333222 222221110 0124678
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g 158 (325)
+..++.+|++++++++++. ++++++|+++++++ +.|.|+++++ .+ +.|++||+|||.++.|+.|.+||
T Consensus 80 ~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence 9999999999999999987 59999999999986 5599999875 57 89999999999989999999999
Q ss_pred ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (325)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~ 222 (325)
..+ ...+|+.++.+...+++|+|+|||+|+||+|++..|++.|.+|++++|+|.|+
T Consensus 148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~~ 203 (203)
T PF13738_consen 148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIWY 203 (203)
T ss_dssp -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS----
T ss_pred -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCCC
Confidence 333 37899999998889999999999999999999999999999999999999774
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.93 E-value=5.4e-24 Score=189.25 Aligned_cols=175 Identities=25% Similarity=0.378 Sum_probs=137.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 87 (325)
+||+|||||++||++|..|++.|++|+|||+++ .||.|.... ....++.+ +...+..++.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 589999999999999999999999999999987 677654321 01111111 1224556899999
Q ss_pred HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCC
Q 020533 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (325)
Q Consensus 88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 167 (325)
.+.++++++.. ++ ++|++++.++ +.|.|++.++ .+ +.||+||+||| +.|..|.+||.+.|
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999998664 66 8899998754 6788887643 56 89999999999 56788889998777
Q ss_pred CCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.+..++.....+....++++|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 5666665544444556789999999999999999999999999999999873
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=99.93 E-value=5.3e-24 Score=191.23 Aligned_cols=177 Identities=18% Similarity=0.302 Sum_probs=138.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (325)
...+||+||||||+||++|..|+++|+++++||+. ..||.+... ...+.++. . +...+.+++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~-----~-~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPG-----D-PNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCC-----C-CCCCCHHHHH
Confidence 35689999999999999999999999999999965 567764421 01111111 1 2335667889
Q ss_pred HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
+++.+.+..++... +++ +|.+++..+ +.|+++... .. +.||+||+||| +.|+.|++||.+.|
T Consensus 67 ~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~-- 128 (321)
T PRK10262 67 ERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF-- 128 (321)
T ss_pred HHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc--
Confidence 99999999887643 554 566777654 678776532 35 88999999999 66888999998888
Q ss_pred CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.+..+|.+.+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus 129 ----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 129 ----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred ----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 7777888777766667899999999999999999999999999999999873
No 8
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-22 Score=177.26 Aligned_cols=173 Identities=24% Similarity=0.395 Sum_probs=135.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
.+||+||||||+||+||.++.+.+.+ ++|+|+. ..||.... .. ....+| .++.-.+..++.+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~------~~-------~venyp---g~~~~~~g~~L~~ 65 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTK------TT-------DVENYP---GFPGGILGPELME 65 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCcccc------ce-------eecCCC---CCccCCchHHHHH
Confidence 58999999999999999999999999 5555554 45532111 00 011111 1122346778888
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
-+.+.++.++... .. ..|.+++... ..|.|++.+ .+ +++++||+||| ..++.|.+||.++|
T Consensus 66 ~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~--------~~-~~ak~vIiAtG--~~~~~~~~~~e~e~--- 126 (305)
T COG0492 66 QMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDK--------GT-YEAKAVIIATG--AGARKLGVPGEEEF--- 126 (305)
T ss_pred HHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECC--------Ce-EEEeEEEECcC--CcccCCCCCcchhh---
Confidence 8999999888763 33 6777777654 278888887 45 89999999999 66777888888888
Q ss_pred CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
.|+.+|.+..++. .+++|+|+|||+|+||+|-|..|++.+.+||+++|++
T Consensus 127 ---~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~ 176 (305)
T COG0492 127 ---EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176 (305)
T ss_pred ---cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence 8999999999887 8999999999999999999999999999999999998
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.90 E-value=1.6e-22 Score=192.48 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=142.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..+||+||||||+|+++|.+|++.|++++|+++. +||.|... + .+..++ . ..+....++.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l~~ 270 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKLAA 270 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHHHH
Confidence 4689999999999999999999999999999864 88887531 0 111111 0 12356779999
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
++.+.++++++.. +++++|.+++..+ +.|.|++.++ .+ +.+|.||+||| +.|+.|++||.+.|
T Consensus 271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~--- 333 (517)
T PRK15317 271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY--- 333 (517)
T ss_pred HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence 9999999998665 8899999998864 6788887553 46 89999999999 56777889998888
Q ss_pred CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.+..+|.....+...+++|+|+|||+|++|+|+|..|+..+.+|+++.|.+.
T Consensus 334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 7777777655555567899999999999999999999999999999999873
No 10
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.89 E-value=7e-23 Score=183.76 Aligned_cols=207 Identities=27% Similarity=0.399 Sum_probs=131.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCCCC-CCceEeecC--CCccCCCCCCCCCCC--------
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA--KQFCQLPHLPFPSSY-------- 74 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~--~~~~~~~~~~~~~~~-------- 74 (325)
.+|+++||.||++|++|..|.+.+ .++..||+.+.+ .|...+ .++.+++++ +.+..+.+-.-+..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 379999999999999999999986 899999998864 477543 456555544 222122111111111
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCC--CcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533 75 ---------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLVV 143 (325)
Q Consensus 75 ---------~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ad~vIi 143 (325)
..+|++.++.+|+++.+++++.. ++|+++|++|++.... ..|.|++.+..+ .... +.|+.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEEE
Confidence 15689999999999999999743 5999999999987643 359999975332 2267 99999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCC--CCCCCCeEEEECcCCCHHHHHHHHhhccC--eEEEEEecC
Q 020533 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP 219 (325)
Q Consensus 144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~~~--~v~~~~r~~ 219 (325)
|+| ..|.+|+....... ...++|++++... ...++++|+|||+|.||+|++..|.+.+. +|+++.|++
T Consensus 154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 78888864322112 3689999988664 35678999999999999999999999875 799999999
Q ss_pred CeeechhhHHH
Q 020533 220 VHVLSREMVYL 230 (325)
Q Consensus 220 ~~~~p~~~~~~ 230 (325)
.+.|.++..+
T Consensus 226 -~~~~~d~s~f 235 (341)
T PF13434_consen 226 -GFFPMDDSPF 235 (341)
T ss_dssp -S-EB----CC
T ss_pred -ccCCCccccc
Confidence 6778776544
No 11
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.89 E-value=1.7e-21 Score=185.15 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=135.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..+||+||||||+|+++|..|++.|.+++|+|. .+||.+... . .+..+... .+....++.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~---------~~~~~~~~-------~~~~~~~l~~ 271 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V---------GIENLISV-------PYTTGSQLAA 271 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c---------Cccccccc-------CCCCHHHHHH
Confidence 458999999999999999999999999999975 588876531 0 00001000 1235678889
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
++.+.++++++.. +.+++|.+++.++ +.|.+++.++ .. +.||++|+||| +.|+.|++||.+.+
T Consensus 272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~--- 334 (515)
T TIGR03140 272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY--- 334 (515)
T ss_pred HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence 9999998888655 8899999998654 5688877543 46 89999999999 55777889997666
Q ss_pred CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
.+..++.....+.....+++|+|||+|++|+|+|..|+..+.+||++.+.+
T Consensus 335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 555555544444344568999999999999999999999999999999887
No 12
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.89 E-value=9e-22 Score=188.47 Aligned_cols=174 Identities=21% Similarity=0.386 Sum_probs=135.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
.|||+||||||+||++|..|++.|++|+|||++ .+||.+.... ....++ . ....+..++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~-------------~i~~~p--g--~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS-------------EVVNYP--G--ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc-------------ccccCC--C--CcCCCHHHHHHH
Confidence 589999999999999999999999999999996 5777654210 000111 0 022456788899
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~ 166 (325)
+.+.++++++. .++++|.+++.++ ..+.|.+.+ .. +.+++||+||| +.|+.|++||.+.+
T Consensus 66 l~~~~~~~gv~---~~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVK---FLQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCE---EeccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 99999998865 3578888887653 456676643 35 78899999999 67888999998777
Q ss_pred CCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.+..++.+...+...+.+++|+|||+|.+|+|+|..|++.|.+|+++.|.+.
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 6766766555554556799999999999999999999999999999999884
No 13
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.89 E-value=7.5e-22 Score=185.83 Aligned_cols=201 Identities=14% Similarity=0.163 Sum_probs=126.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCC-CccCCCCCC-C-CCCCCCCCCHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK-QFCQLPHLP-F-PSSYPMFVSRA 81 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~ 81 (325)
.++||+||||||+|+.+|..|++.|.+|+|||+++.+||+|.. .+.|+..+.... .+..+...+ + ........+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 3589999999999999999999999999999999889998854 333332111000 000000000 0 00001122344
Q ss_pred HHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 82 ~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
++.++ +...+++.++.. +.+ ++..++ .+.+.|...++ +... +++|+||+||| +.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviATG--s~ 148 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDG-----EVET-LTADKIVIATG--SR 148 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--CC
Confidence 44443 333344445432 333 233332 24566665432 1247 89999999999 77
Q ss_pred CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (325)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~ 230 (325)
|..|++++.+. ..++++..... ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++
T Consensus 149 p~~p~~~~~~~--------~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~ 218 (461)
T PRK05249 149 PYRPPDVDFDH--------PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEI 218 (461)
T ss_pred CCCCCCCCCCC--------CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHH
Confidence 88887665432 13444443333 23357999999999999999999999999999999998 5666554444
Q ss_pred H
Q 020533 231 G 231 (325)
Q Consensus 231 ~ 231 (325)
.
T Consensus 219 ~ 219 (461)
T PRK05249 219 S 219 (461)
T ss_pred H
Confidence 3
No 14
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.88 E-value=1.8e-21 Score=183.22 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=122.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-CCCCCceEeecCCCccC----CCCCCCCCCCCCCCCH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (325)
..|||+||||||+|+++|..|++.|.+|+|+|+.. +||+|. ..+.|+..+......+. ...+.+... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46899999999999999999999999999999987 899774 44555432221111110 011111100 112355
Q ss_pred HHHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.++.+|.... +++.++.. +.+ ++..++ ...++|...++ + .. ++||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~----~~~~~v~~~~~--~----~~-~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVD----PNTVRVMTEDG--E----QT-YTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCEEEEecCCC--c----EE-EEeCEEEEeCC--C
Confidence 6666664443 33344332 333 333332 23344543221 1 56 89999999999 5
Q ss_pred CCCCCCCCCccccccCCCCCccEE-ecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533 150 NPFTPDIRGLCSFCSSATGTGEVI-HSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~ 228 (325)
.|..| ||.+. .+..+ ++.+... ....+++++|||+|.+|+|+|..+++.|.+||++.|.+ .++|..+.
T Consensus 145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~ 213 (462)
T PRK06416 145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK 213 (462)
T ss_pred CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH
Confidence 66543 45542 33333 3333322 22346899999999999999999999999999999998 56665443
Q ss_pred HH
Q 020533 229 YL 230 (325)
Q Consensus 229 ~~ 230 (325)
.+
T Consensus 214 ~~ 215 (462)
T PRK06416 214 EI 215 (462)
T ss_pred HH
Confidence 33
No 15
>PLN02507 glutathione reductase
Probab=99.88 E-value=1.8e-21 Score=184.01 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=122.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEec---------CCCCCCccC-CCCCCceEeecCCCcc----CCCCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPS 72 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~---------~~~~Gg~w~-~~~y~~~~~~~~~~~~----~~~~~~~~~ 72 (325)
+|||+||||||+|+.+|..+++.|.+|+|+|+ .+.+||+|. ..++|+..+......+ ....+....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999999999999999999996 356899874 3555543331111110 000010000
Q ss_pred CCCCCCCHHHHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533 73 SYPMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (325)
Q Consensus 73 ~~~~~~~~~~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (325)
....-....++.+++.. .....++. .+..++..++ ...+.|+..++ +..+ +.||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd----~~~v~V~~~~g-----~~~~-~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVG----PNEVEVTQLDG-----TKLR-YTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEec----CCEEEEEeCCC-----cEEE-EEcCEE
Confidence 00001233343433322 23333432 2223333332 24566765543 2246 899999
Q ss_pred EEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (325)
Q Consensus 142 IiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~ 221 (325)
|+||| +.|..|.+||.+.. .++.+... ....+++++|||+|.+|+|+|..++..|.+|+++.|.+ .
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ 237 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L 237 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence 99999 78888888886432 22222211 12236899999999999999999999999999999988 4
Q ss_pred eechhhHHH
Q 020533 222 VLSREMVYL 230 (325)
Q Consensus 222 ~~p~~~~~~ 230 (325)
++|..+.++
T Consensus 238 ~l~~~d~~~ 246 (499)
T PLN02507 238 PLRGFDDEM 246 (499)
T ss_pred cCcccCHHH
Confidence 555444433
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.87 E-value=3.5e-21 Score=180.20 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=117.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCc----cCCCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (325)
+|||+||||||+|+.+|..|++.|.+|+|+|+. .+||+|.. .+.|+..+...... .....+..+..........
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999996 58997753 34443211110000 0001111110000011222
Q ss_pred HHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 82 ~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
++.++ +...+++.++.. +.++.+ ..+ .+ +|.+.. .. +.||+||+||| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~----~~~-~~--~v~v~~--------~~-~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHAR----FTK-DG--TVEVNG--------RD-YTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEE----Ecc-CC--EEEECC--------EE-EEeCEEEEecC--CC
Confidence 33333 233333444332 554432 111 12 344421 56 89999999999 77
Q ss_pred CCCC-CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533 151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (325)
Q Consensus 151 p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~ 229 (325)
|..| ++||.+.. +.+..+.. ....+++++|||+|.+|+|+|..++..|.+||++.|.+ .++|..+..
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~ 208 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM 208 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence 8888 78886531 12222211 11236899999999999999999999999999999998 455655444
Q ss_pred HH
Q 020533 230 LG 231 (325)
Q Consensus 230 ~~ 231 (325)
+.
T Consensus 209 ~~ 210 (450)
T TIGR01421 209 IS 210 (450)
T ss_pred HH
Confidence 43
No 17
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.87 E-value=1.4e-21 Score=180.02 Aligned_cols=206 Identities=17% Similarity=0.210 Sum_probs=136.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-CCCCCceEeecCCCcc-CCCCC--CCCCCCCC-CCCH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC-QLPHL--PFPSSYPM-FVSR 80 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-~~~y~~~~~~~~~~~~-~~~~~--~~~~~~~~-~~~~ 80 (325)
..||++|||+||+|..+|.++++.|.+++++|+...+||++- ..+.|+..+......+ .+... .+...... -.+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 469999999999999999999999999999999988999874 3444443222111111 00000 00000000 1233
Q ss_pred HHHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.++.+..++ ..+..++.. ..+ +. +.. +..+|.+... +. .+ ++++++|+||| +
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~v--i~G-~a---~f~---~~~~v~V~~~-~~----~~-~~a~~iiIATG--S 145 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDV--IRG-EA---RFV---DPHTVEVTGE-DK----ET-ITADNIIIATG--S 145 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEE--EEE-EE---EEC---CCCEEEEcCC-Cc----eE-EEeCEEEEcCC--C
Confidence 333333333 333333321 111 11 111 1233544443 11 67 99999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (325)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~ 229 (325)
+|..|+++|++.. .++.+.+..... .-+++++|||+|.+|+|+|..++++|.+||+++|++ .+||..+.+
T Consensus 146 ~p~~~~~~~~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~e 215 (454)
T COG1249 146 RPRIPPGPGIDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPE 215 (454)
T ss_pred CCcCCCCCCCCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHH
Confidence 9999999988753 355555544434 567999999999999999999999999999999999 899999998
Q ss_pred HHHHHHhhC
Q 020533 230 LGVVLFKYV 238 (325)
Q Consensus 230 ~~~~~~~~~ 238 (325)
++..+.+.+
T Consensus 216 i~~~~~~~l 224 (454)
T COG1249 216 ISKELTKQL 224 (454)
T ss_pred HHHHHHHHH
Confidence 887665544
No 18
>PRK06116 glutathione reductase; Validated
Probab=99.87 E-value=4.1e-21 Score=180.20 Aligned_cols=188 Identities=21% Similarity=0.231 Sum_probs=117.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----C-CCCCCCCCCCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----Q-LPHLPFPSSYPMFVS 79 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~ 79 (325)
.++||+||||||+|+++|..|+++|.+|+|+|+. .+||+|.. .+.|+..+....... . ...+.+... .....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 80 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFD 80 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcC
Confidence 3589999999999999999999999999999996 78998743 333332111000000 0 000000000 00112
Q ss_pred HHHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 80 RAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 80 ~~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
..++.++ +.+...+.++.. ..+ ++..++ ..+|++ ++ .+ ++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG-- 140 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG-- 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--
Confidence 2233222 233344445432 333 344332 134555 22 57 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (325)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~ 227 (325)
+.|..|++||.+.. +++..... ....+++|+|||+|.+|+|+|..+++.|.+|+++.|.+ .+++...
T Consensus 141 s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~ 207 (450)
T PRK06116 141 GRPSIPDIPGAEYG----------ITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFD 207 (450)
T ss_pred CCCCCCCCCCccee----------EchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccC
Confidence 77888888886532 33332222 12246899999999999999999999999999999988 4555433
No 19
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.86 E-value=2e-20 Score=175.14 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=119.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCc----cCCCCCCCCCCCCCCCCH-
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSR- 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 80 (325)
+|||+||||||+|+++|..+++.|.+|+|+|+. .+||++.. .+.|+..+...... .....+..... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999995 78998753 34443321111000 00011110000 001111
Q ss_pred ----------HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 81 ----------AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 81 ----------~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
.++.++++..+++.++.. .. .++..++. ....+. .+ + .. +++|+||+||| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~v~~----~~v~v~-~~---g----~~-~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL--LE-GRARLVGP----NTVEVL-QD---G----TT-YTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-EEEEEecC----CEEEEe-cC---C----eE-EEcCEEEEecC--Cc
Confidence 233344555555666542 33 35555532 233332 11 1 56 89999999999 78
Q ss_pred CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~ 228 (325)
|..|++||.+.. +.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~ 207 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD 207 (446)
T ss_pred CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH
Confidence 888889886531 11111111 11247899999999999999999999999999999988 45554433
No 20
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.86 E-value=2.4e-20 Score=174.48 Aligned_cols=185 Identities=17% Similarity=0.181 Sum_probs=118.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC-CCCccCC-CCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~-~Gg~w~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (325)
++||+||||||+|+++|..|++.|.+|+|+|+++. +||++.. .+.|...+..... . ..+..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--------~~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--------NLSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--------CCCHHHHH
Confidence 58999999999999999999999999999999874 6887532 2222111110000 0 01122222
Q ss_pred HHHH-----------HHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 85 EHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 85 ~yl~-----------~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
++.. +...+.++.. +.++ ...+ +.. +|.+..... ..+ +.+|+||+||| +.|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g~-~~~~----~~~--~v~v~~~~~----~~~-~~~d~vViATG--s~~~~ 132 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDAE-AHFV----SNK--VIEVQAGDE----KIE-LTAETIVINTG--AVSNV 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEc----cCC--EEEEeeCCC----cEE-EEcCEEEEeCC--CCCCC
Confidence 2222 2233334332 2222 2211 112 344433211 157 89999999999 67888
Q ss_pred CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (325)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~ 230 (325)
|++||.+.. . .++++..... ....+++|+|||+|.+|+|+|..+++.|.+|+++.|++ .++|+....+
T Consensus 133 p~i~G~~~~------~-~v~~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~ 200 (438)
T PRK07251 133 LPIPGLADS------K-HVYDSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSV 200 (438)
T ss_pred CCCCCcCCC------C-cEEchHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHH
Confidence 999997654 2 2444443333 22347899999999999999999999999999999998 5667654443
No 21
>PRK14694 putative mercuric reductase; Provisional
Probab=99.86 E-value=2.3e-20 Score=175.78 Aligned_cols=198 Identities=17% Similarity=0.239 Sum_probs=128.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCcc-------C-CCCCCCCCCC--
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC-------Q-LPHLPFPSSY-- 74 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~-------~-~~~~~~~~~~-- 74 (325)
..++||+|||||++|+++|..|++.|.+|+|||+. .+||+|.+. +| +|+..+ . ....++....
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~---Gc---iPsk~l~~~a~~~~~~~~~~~~~g~~~ 76 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNI---GC---VPSKIMIRAAHIAHLRRESPFDDGLSA 76 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecC---Cc---cccHHHHHHHHHHHHHhhccccCCccc
Confidence 35789999999999999999999999999999997 699998742 22 111110 0 0000100000
Q ss_pred -CCCCCHHHHHHHHHHHHHHcC-------CCc--ee-eeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533 75 -PMFVSRAQFIEHLDHYVSHFN-------IGP--SI-RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (325)
Q Consensus 75 -~~~~~~~~~~~yl~~~a~~~~-------l~~--~i-~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi 143 (325)
..-.+..++.++.++..+.+. +.. .+ .+..++..++ ...|.|++.++. ..+ ++||+||+
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id----~~~~~V~~~~g~-----~~~-~~~d~lVi 146 (468)
T PRK14694 77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD----ERTLTVTLNDGG-----EQT-VHFDRAFI 146 (468)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec----CCEEEEEecCCC-----eEE-EECCEEEE
Confidence 011344556555554433221 100 00 2223444443 356888886642 157 89999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeee
Q 020533 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223 (325)
Q Consensus 144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~ 223 (325)
||| +.|..|++||++.. .++++.+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+. .++
T Consensus 147 ATG--s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l 213 (468)
T PRK14694 147 GTG--ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVL 213 (468)
T ss_pred eCC--CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCC
Confidence 999 78899999998654 2344433222 2234789999999999999999999999999999874 466
Q ss_pred chhhHHHHH
Q 020533 224 SREMVYLGV 232 (325)
Q Consensus 224 p~~~~~~~~ 232 (325)
|..+.++..
T Consensus 214 ~~~~~~~~~ 222 (468)
T PRK14694 214 SQEDPAVGE 222 (468)
T ss_pred CCCCHHHHH
Confidence 655444433
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.85 E-value=5.4e-21 Score=178.92 Aligned_cols=193 Identities=19% Similarity=0.251 Sum_probs=124.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCC-CCCceEeecCCCccCCCCCCCCCCCC-CCCCHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKY-SYDRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQF 83 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (325)
+|||+||||||+|+++|..|+++|.+|+|+|+.+ .+||+|... +.+...+..+. . ...++. ......++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~------~--~~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA------Q--QHTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh------c--cCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999986 479987532 22211100000 0 000110 01111233
Q ss_pred HHHHHHH-----HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533 84 IEHLDHY-----VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (325)
Q Consensus 84 ~~yl~~~-----a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g 158 (325)
.+++.+. .+..++. +. ..++..++ .+.+.|...++ . .+ +.+|+||+||| +.|..|++||
T Consensus 75 ~~~~~~~~~~~~~~~~gv~--~~-~g~~~~i~----~~~~~v~~~~g-----~-~~-~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNID--VI-DGQAEFIN----NHSLRVHRPEG-----N-LE-IHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcE--EE-EEEEEEec----CCEEEEEeCCC-----e-EE-EEeCEEEEcCC--CcCCCCCCCC
Confidence 3333321 1111322 12 22343332 24566665442 1 46 89999999999 7888899999
Q ss_pred ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHH
Q 020533 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV 232 (325)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~ 232 (325)
.+.+ .+ ++++..+.. ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+..+..
T Consensus 139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~ 203 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIAD 203 (441)
T ss_pred ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHH
Confidence 8765 44 444443333 23356899999999999999999999999999999988 677876555443
No 23
>PRK14727 putative mercuric reductase; Provisional
Probab=99.85 E-value=1e-20 Score=178.44 Aligned_cols=212 Identities=19% Similarity=0.209 Sum_probs=126.8
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCCcc----CCCCCCCCCCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFC----QLPHLPFPSSYP 75 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~~~----~~~~~~~~~~~~ 75 (325)
|...+.++||+|||||++|+++|..|+++|.+|+++|+.+.+||+|.+. +.|+..+..+.... ..+.+.++...+
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 89 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP 89 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC
Confidence 3445567999999999999999999999999999999998899999753 33432211110000 011111110101
Q ss_pred CCCCHHHHHHHHHHHHHHcC---CCceeee--CeEEE--EEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 76 MFVSRAQFIEHLDHYVSHFN---IGPSIRY--QRSVE--SASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 76 ~~~~~~~~~~yl~~~a~~~~---l~~~i~~--~~~V~--~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
-.....+..+......+.. ....+.. +.++. ...+.+ .+.+.|+..++ +..+ ++||+||+|||
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~-~~~v~v~~~~g-----~~~~-~~~d~lViATG-- 159 (479)
T PRK14727 90 -SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD-GNTLVVRLHDG-----GERV-LAADRCLIATG-- 159 (479)
T ss_pred -ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec-CCEEEEEeCCC-----ceEE-EEeCEEEEecC--
Confidence 1123333333322222110 0000000 11111 122222 35566765443 2257 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~ 228 (325)
+.|..|++||.+.. ..+++.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|. .++|..+.
T Consensus 160 s~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~ 228 (479)
T PRK14727 160 STPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP 228 (479)
T ss_pred CCCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH
Confidence 78999999997542 2233222211 1234689999999999999999999999999999885 36666555
Q ss_pred HHHHH
Q 020533 229 YLGVV 233 (325)
Q Consensus 229 ~~~~~ 233 (325)
.+...
T Consensus 229 ~~~~~ 233 (479)
T PRK14727 229 LLGET 233 (479)
T ss_pred HHHHH
Confidence 44443
No 24
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.84 E-value=6e-21 Score=179.74 Aligned_cols=196 Identities=18% Similarity=0.242 Sum_probs=122.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc------CCCCCC--CCCCCCC-C
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC------QLPHLP--FPSSYPM-F 77 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~------~~~~~~--~~~~~~~-~ 77 (325)
|||+||||||+|+++|..|++.|.+|+|+|+.. +||+|.+ .+.|+..+....... .+.... ..-++.. .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999976 8998753 233322111000000 010000 0001110 1
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533 78 VSRAQFIEHL-----DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (325)
Q Consensus 78 ~~~~~~~~yl-----~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~ 152 (325)
....++..++ ...++++++.. ..+ ++..+ +..+|.+.++ + .. +.+|+||+||| +.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g-----~-~~-~~~~~lIiATG--s~p~ 141 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG-----R-EV-RGAKRFLIATG--ARPA 141 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC-----e-EE-EEeCEEEEcCC--CCCC
Confidence 1122333322 23344455432 332 22221 1234555432 1 45 78999999999 7888
Q ss_pred CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHH
Q 020533 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV 232 (325)
Q Consensus 153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~ 232 (325)
.|++||.+.+ .++++.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++..
T Consensus 142 ~p~i~G~~~~--------~~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~ 211 (463)
T TIGR02053 142 IPPIPGLKEA--------GYLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISA 211 (463)
T ss_pred CCCCCCcccC--------ceECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHH
Confidence 9999998754 24444443332 2235899999999999999999999999999999998 577766555443
No 25
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.84 E-value=1.2e-20 Score=178.54 Aligned_cols=202 Identities=15% Similarity=0.201 Sum_probs=123.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCCcc-CCCCCCceEeecCCCccC-C----CCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ-L----PHLPFPS 72 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--------~~Gg~w-~~~~y~~~~~~~~~~~~~-~----~~~~~~~ 72 (325)
.|||+||||||+|+.+|..|+++|.+|+|+|+.. .+||++ +..++|+..+........ + ..+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 5899999999999999999999999999999732 488876 344555322111100000 0 001111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcC----CCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE----ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 73 ~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
...-....++.+++.+.++.++... ....++..++... ..+.++|.+.+... ... ++||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~----~~~-i~~d~lIIATG-- 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNSQ----EET-ITAKYILIATG-- 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCCC----ceE-EECCEEEEecC--
Confidence 0113456788888887776654322 2222111111100 01224455543221 157 89999999999
Q ss_pred CCCCCCC-CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533 149 TNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (325)
Q Consensus 149 ~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~ 227 (325)
+.|..|. +||.+.+ .+.+.+... ....+++++|||+|.+|+|+|..|++.|.+||++.++ .++|..+
T Consensus 154 s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d 221 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFD 221 (499)
T ss_pred CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCC
Confidence 7788874 8886543 222222222 1224579999999999999999999999999999874 3455554
Q ss_pred HHHH
Q 020533 228 VYLG 231 (325)
Q Consensus 228 ~~~~ 231 (325)
..+.
T Consensus 222 ~~~~ 225 (499)
T PTZ00052 222 RQCS 225 (499)
T ss_pred HHHH
Confidence 4443
No 26
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.84 E-value=1.3e-19 Score=170.79 Aligned_cols=195 Identities=14% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC----CCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (325)
.|||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|.. .++|+..+......+. ...+..... ....+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 38999999999999999999999999999999 789998754 3444322111111100 000000000 0112333
Q ss_pred HHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 82 ~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
.+.++... ..++.++.. .. .++..+ +...+.+...++ . .+ +++|+||+||| +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-g~~~~~----~~~~~~v~~~~g-----~-~~-~~~d~lVlAtG--~~ 142 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTV--IK-GEAKFL----DPGTVLVTGENG-----E-ET-LTAKNIIIATG--SR 142 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEc----cCCEEEEecCCC-----c-EE-EEeCEEEEcCC--CC
Confidence 33333322 223334321 22 222222 124455554332 1 46 89999999999 67
Q ss_pred CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~ 228 (325)
|+.|++| . .+ .+..+++..........+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|....
T Consensus 143 p~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~ 211 (461)
T TIGR01350 143 PRSLPGP-F-DF------DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA 211 (461)
T ss_pred CCCCCCC-C-CC------CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH
Confidence 7777765 1 12 222333332222223356899999999999999999999999999999998 56665443
No 27
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.84 E-value=7.3e-20 Score=172.62 Aligned_cols=199 Identities=14% Similarity=0.191 Sum_probs=118.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEec------CCCCCCccCCC-CCCceEee-cCCCccCC----CCCCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWKKY-SYDRLRLH-LAKQFCQL----PHLPFPSSY 74 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~------~~~~Gg~w~~~-~y~~~~~~-~~~~~~~~----~~~~~~~~~ 74 (325)
.||++||||||+|+++|..+++.|.+|+|+|+ ...+||+|... ++|...+. .......+ ..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 58999999999999999999999999999998 36789988643 23321110 00000000 00000000
Q ss_pred CCCCCHHHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533 75 PMFVSRAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (325)
Q Consensus 75 ~~~~~~~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi 143 (325)
..-....++.+. +.+..+..++. .+..++..++... ..++|.+....+ .+ +++|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~~~-----~~-~~~d~lVi 151 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGEDE-----TV-ITAKHVII 151 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecCCC-----eE-EEeCEEEE
Confidence 000122222222 22233334433 2334444444332 457777753221 57 89999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeee
Q 020533 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223 (325)
Q Consensus 144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~ 223 (325)
||| +.|+.| |+.+ + .+..+++++........+++|+|||+|.+|+|+|..+++.|.+|+++.|++ .++
T Consensus 152 ATG--s~p~~~--p~~~-~------~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l 219 (475)
T PRK06327 152 ATG--SEPRHL--PGVP-F------DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL 219 (475)
T ss_pred eCC--CCCCCC--CCCC-C------CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC
Confidence 999 566533 3322 2 233333333222223357899999999999999999999999999999998 556
Q ss_pred chhhHH
Q 020533 224 SREMVY 229 (325)
Q Consensus 224 p~~~~~ 229 (325)
|..+.+
T Consensus 220 ~~~d~~ 225 (475)
T PRK06327 220 AAADEQ 225 (475)
T ss_pred CcCCHH
Confidence 654333
No 28
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.84 E-value=2.7e-19 Score=168.58 Aligned_cols=203 Identities=14% Similarity=0.144 Sum_probs=115.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC-----CCCCCCCCCCCCCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-----LPHLPFPSSYPMFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 80 (325)
++||+||||||+|+++|..|++.|.+|+|+|++ .+||++.. .+.|+..+........ ...+.... ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence 589999999999999999999999999999986 57887654 3333211110000000 00000000 011233
Q ss_pred HHHHHHHHHHHHHcCCCceeeeC-eEEEEEEE---cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQ-RSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~-~~V~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~ 156 (325)
..+.++.++..++..-.....+. ..|+.++- ..+.+.+.|...++ +..+ ++||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~p~~~-- 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDG-----GTET-VTFDNAIIATG--SSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCC-----CeeE-EEcCEEEEeCC--CCCCCC--
Confidence 33333333332211000000110 12222221 11124444544332 1157 89999999999 666553
Q ss_pred CCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHH
Q 020533 157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG 231 (325)
Q Consensus 157 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~ 231 (325)
||.+. .+.++.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++.
T Consensus 151 pg~~~-------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~ 216 (466)
T PRK07818 151 PGTSL-------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVS 216 (466)
T ss_pred CCCCC-------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHH
Confidence 55432 233443332111 22346899999999999999999999999999999988 67776554443
No 29
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.83 E-value=4.4e-20 Score=174.14 Aligned_cols=205 Identities=19% Similarity=0.208 Sum_probs=124.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCCccC----CCCCCCCCCCCCCCCH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (325)
..|||+||||||+|+++|..|++.|.+|+|+|+. .+||+|... +.|+..+......+. ...+..... ......
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 80 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDF 80 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence 4689999999999999999999999999999996 789998643 333221111000000 000000000 001122
Q ss_pred HH-------HHHHHH----HHHHHcCCCceeeeCeEEEEEEEc---CCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533 81 AQ-------FIEHLD----HYVSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (325)
Q Consensus 81 ~~-------~~~yl~----~~a~~~~l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG 146 (325)
.+ +.+++. +.+++.++. .+..++..++.. ++.+.+.|...++. ..+ ++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~---~~~g~a~~i~~~~~~~~~~~~~v~~~~g~-----~~~-~~~d~lViATG 151 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKID---VFHGIGRILGPSIFSPMPGTVSVETETGE-----NEM-IIPENLLIATG 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeCCCCCcCCceEEEEEeCCCc-----eEE-EEcCEEEEeCC
Confidence 22 222232 333444544 233445555432 12235666654431 157 89999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcc-EEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533 147 ETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (325)
Q Consensus 147 ~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~ 225 (325)
+.|..| |+.+ + .+. ++++.+... ....+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|.
T Consensus 152 --s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~ 218 (472)
T PRK05976 152 --SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPT 218 (472)
T ss_pred --CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCc
Confidence 566543 3332 1 222 444433332 22346899999999999999999999999999999998 67787
Q ss_pred hhHHHHHHH
Q 020533 226 EMVYLGVVL 234 (325)
Q Consensus 226 ~~~~~~~~~ 234 (325)
.+..+...+
T Consensus 219 ~~~~~~~~l 227 (472)
T PRK05976 219 EDAELSKEV 227 (472)
T ss_pred CCHHHHHHH
Confidence 665554443
No 30
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.83 E-value=5e-20 Score=173.38 Aligned_cols=203 Identities=16% Similarity=0.096 Sum_probs=123.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecC-CCcc---CCCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA-KQFC---QLPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ 81 (325)
+|||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|.. .++|+..+... .... ....+..... ....+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 589999999999999999999999999999998889997744 34554221100 0000 0000000000 0112334
Q ss_pred HHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 82 QFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 82 ~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
++.++.... ++..++.. +. .++..++ .+...|...++ +..+ ++||+||+||| +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~-g~a~~~~----~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~ 147 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--VN-GLGKFTG----GNTLEVTGEDG-----KTTV-IEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----ceEE-EEcCEEEEeCC--CC
Confidence 444444332 33335432 32 2232221 23344443322 1257 89999999999 66
Q ss_pred CCC-CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533 151 PFT-PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (325)
Q Consensus 151 p~~-p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~ 229 (325)
|.. |.+++.. ..++.+.+.... ...+++++|||+|.+|+|+|..+++.|.+||++.+.+ .++|..+.+
T Consensus 148 p~~~p~~~~~~---------~~v~~~~~~~~~-~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~ 216 (471)
T PRK06467 148 PIQLPFIPHDD---------PRIWDSTDALEL-KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKD 216 (471)
T ss_pred CCCCCCCCCCC---------CcEEChHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHH
Confidence 753 4444422 123433333322 2246899999999999999999999999999999998 678876666
Q ss_pred HHHHHHh
Q 020533 230 LGVVLFK 236 (325)
Q Consensus 230 ~~~~~~~ 236 (325)
+...+.+
T Consensus 217 ~~~~~~~ 223 (471)
T PRK06467 217 IVKVFTK 223 (471)
T ss_pred HHHHHHH
Confidence 5554443
No 31
>PRK06370 mercuric reductase; Validated
Probab=99.83 E-value=3.8e-20 Score=174.19 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=121.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----CCCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (325)
++||+||||||+|+++|..|++.|.+|+|+|+. .+||+|.. .+.|+..+....... ....+.++..........
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 589999999999999999999999999999996 57887643 222221110000000 000011110000112334
Q ss_pred HHHHHHHHHH-----------HHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 82 QFIEHLDHYV-----------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 82 ~~~~yl~~~a-----------~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
++.++..+.+ ++. ++. ++.++.+. . +..+|++.. .+ +++|+||+||| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~----~---~~~~v~v~~--------~~-~~~d~lViATG--s 143 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF----E---SPNTVRVGG--------ET-LRAKRIFINTG--A 143 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE----c---cCCEEEECc--------EE-EEeCEEEEcCC--C
Confidence 4444433332 222 332 24444321 1 112344422 56 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (325)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~ 229 (325)
.|..|++||.+.. .++++.+..+ ....+++|+|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.+
T Consensus 144 ~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~ 213 (463)
T PRK06370 144 RAAIPPIPGLDEV--------GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDED 213 (463)
T ss_pred CCCCCCCCCCCcC--------ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHH
Confidence 8999999997653 2444443332 22347999999999999999999999999999999998 677765544
Q ss_pred HHH
Q 020533 230 LGV 232 (325)
Q Consensus 230 ~~~ 232 (325)
+..
T Consensus 214 ~~~ 216 (463)
T PRK06370 214 VAA 216 (463)
T ss_pred HHH
Confidence 443
No 32
>PRK13748 putative mercuric reductase; Provisional
Probab=99.83 E-value=7e-20 Score=176.55 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=124.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----CCCC-CCCCCCCCCCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPH-LPFPSSYPMFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~ 80 (325)
++||+||||||+|+++|..|++.|.+|+|||++ .+||+|.+ .++|+..+..+.... ..+. ..++.. ......
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC-CCccCH
Confidence 589999999999999999999999999999998 79999864 334432211110000 0000 011101 111234
Q ss_pred HHHHHHHHHHHHHcC-------C----CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEHLDHYVSHFN-------I----GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~-------l----~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
..+.++..+...++. + ... .+..++..++ ...+.|+..++ +..+ ++||+||+||| +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviAtG--s 242 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAIT-VLHGEARFKD----DQTLIVRLNDG-----GERV-VAFDRCLIATG--A 242 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeE-EEEEEEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--C
Confidence 455554443332211 0 011 1222333222 24566665432 1157 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (325)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~ 229 (325)
.|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.. ++|..+.+
T Consensus 243 ~p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~~ 311 (561)
T PRK13748 243 SPAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDPA 311 (561)
T ss_pred CCCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCHH
Confidence 8899999997653 1233222111 22346899999999999999999999999999999854 56665555
Q ss_pred HHHHH
Q 020533 230 LGVVL 234 (325)
Q Consensus 230 ~~~~~ 234 (325)
++..+
T Consensus 312 ~~~~l 316 (561)
T PRK13748 312 IGEAV 316 (561)
T ss_pred HHHHH
Confidence 54433
No 33
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.83 E-value=4.4e-20 Score=173.80 Aligned_cols=203 Identities=17% Similarity=0.172 Sum_probs=124.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCC----ccCCCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (325)
.|||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|.. .++|+..+..... ...++.+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 48999999999999999999999999999999 679999864 2222211100000 000111111111 1345677
Q ss_pred HHHHHHHHHHHHcCCCc-eeee---CeEEE-E-EEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCC
Q 020533 82 QFIEHLDHYVSHFNIGP-SIRY---QRSVE-S-ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (325)
Q Consensus 82 ~~~~yl~~~a~~~~l~~-~i~~---~~~V~-~-i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~ 155 (325)
++.+++++..+.+.-.. .-.+ +-++. . .... +.+++.+ ++ .+ +.+|+||+|||. . .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~---~~~~v~v-~~-------~~-~~~d~lIiATGs--~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFV---DPNTVEV-NG-------ER-IEAKNIVIATGS--R--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEc---cCCEEEE-Cc-------EE-EEeCEEEEeCCC--C--CCC
Confidence 78887777666542111 0000 11111 0 1111 1233444 21 57 899999999995 3 456
Q ss_pred CCCccccccCCCCCc-cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHH
Q 020533 156 IRGLCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL 234 (325)
Q Consensus 156 ~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~ 234 (325)
+||.+.+ .+ .++++.+.. .....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus 145 ipg~~~~------~~~~~~~~~~~~-~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~ 216 (460)
T PRK06292 145 IPGVWLI------LGDRLLTSDDAF-ELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQA 216 (460)
T ss_pred CCCCccc------CCCcEECchHHh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHH
Confidence 6666433 22 233333322 223457999999999999999999999999999999988 67776555554443
Q ss_pred H
Q 020533 235 F 235 (325)
Q Consensus 235 ~ 235 (325)
.
T Consensus 217 ~ 217 (460)
T PRK06292 217 Q 217 (460)
T ss_pred H
Confidence 3
No 34
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.83 E-value=1.3e-19 Score=166.35 Aligned_cols=168 Identities=20% Similarity=0.330 Sum_probs=115.4
Q ss_pred CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
++|+|||||++|+.+|..|++. ..+++|+++++..- |....+ +..........++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--------------~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--------------SHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--------------cHHHhCCCCHHHhhc
Confidence 4899999999999999999886 45899999987421 211100 000011122234443
Q ss_pred H-HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 86 H-LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 86 y-l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
+ ..++++++++.. +++++|++++.+. +.|++.. .. +.||+||+||| +.|..|++||.+.
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~~--------~~-~~yd~LVlATG--~~~~~p~i~G~~~--- 121 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQG--------NQ-WQYDKLVLATG--ASAFVPPIPGREL--- 121 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEECC--------eE-EeCCEEEECCC--CCCCCCCCCCCce---
Confidence 2 456667777554 8889999997653 3565432 56 89999999999 6788888888642
Q ss_pred CCCCCccEEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 165 ~~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
+++.....+ .....+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+ .++|
T Consensus 122 -------v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~ 178 (377)
T PRK04965 122 -------MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLA 178 (377)
T ss_pred -------EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccc
Confidence 122111111 111357899999999999999999999999999999988 4444
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.83 E-value=6.4e-19 Score=164.57 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=113.8
Q ss_pred CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
++|+|||||++|+.+|..|++. +.+|+|+|+++.++ |..+ .++... . .......+...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~---------~lp~~~--~--~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANC---------ALPYYI--G--EVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccC---------Ccchhh--c--CccCCHHHccc
Confidence 4799999999999999999887 57999999998644 1110 000000 0 01111222222
Q ss_pred HH-HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 86 HL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 86 yl-~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
+. .++.++.++.. +.+++|++++.+. .. |.+.++.++ +..+ +.||+||+||| +.|+.|++++..
T Consensus 62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~--v~~~~~~~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~~---- 126 (438)
T PRK13512 62 YTPEKFYDRKQITV--KTYHEVIAINDER--QT--VTVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDI---- 126 (438)
T ss_pred CCHHHHHHhCCCEE--EeCCEEEEEECCC--CE--EEEEECCCC--cEEe-eecCEEEECCC--CCCCCCCCCCCC----
Confidence 21 23445566544 8889999998754 33 554443221 2246 78999999999 777776654321
Q ss_pred CCCCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~ 228 (325)
++....+.+. ....+++++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..+.
T Consensus 127 -------~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~ 189 (438)
T PRK13512 127 -------TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA 189 (438)
T ss_pred -------eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH
Confidence 1211111110 12246899999999999999999999999999999998 45554433
No 36
>PRK12831 putative oxidoreductase; Provisional
Probab=99.83 E-value=6.1e-20 Score=172.08 Aligned_cols=171 Identities=23% Similarity=0.300 Sum_probs=120.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (325)
...++|+||||||+||++|..|+++|++|+|||+.+.+||.+.+. ++.+.++ .+++.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l~--------~~~~~ 194 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRLP--------KETVV 194 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccCC--------ccHHH
Confidence 346899999999999999999999999999999999999876421 2211111 23466
Q ss_pred HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
++..+.++++++.. ++++.+.. .+..++.. .. +.||.||+|||. +.|+.+++||.+.
T Consensus 195 ~~~~~~~~~~gv~i--~~~~~v~~----------~v~~~~~~------~~-~~~d~viiAtGa-~~~~~l~ipG~~~--- 251 (464)
T PRK12831 195 KKEIENIKKLGVKI--ETNVVVGK----------TVTIDELL------EE-EGFDAVFIGSGA-GLPKFMGIPGENL--- 251 (464)
T ss_pred HHHHHHHHHcCCEE--EcCCEECC----------cCCHHHHH------hc-cCCCEEEEeCCC-CCCCCCCCCCcCC---
Confidence 67777788888654 88876521 12222210 24 578999999995 2577788888753
Q ss_pred CCCCCccEEecCCC----------C---CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533 165 SATGTGEVIHSTQY----------K---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE 226 (325)
Q Consensus 165 ~~~~~g~~~~~~~~----------~---~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~ 226 (325)
.| ++...++ . +.....+++|+|||+|++|+|+|..+.+.|.+|++++|+...-+|..
T Consensus 252 ----~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~ 321 (464)
T PRK12831 252 ----NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPAR 321 (464)
T ss_pred ----cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCC
Confidence 12 2222111 1 11235689999999999999999999999999999999875455543
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.83 E-value=3.5e-19 Score=167.85 Aligned_cols=199 Identities=19% Similarity=0.180 Sum_probs=119.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCCccCC-CCCCceEeecCCCccC----CCCCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSS 73 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--------~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~ 73 (325)
+|||+|||+|++|+.+|..+++.|.+|+++|+.. .+||+|.+ .++|+..+........ ...+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4899999999999999999999999999999731 58998754 5666443221111100 000101000
Q ss_pred CCCCCCHHHHHHHHHHHHHH-----------cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533 74 YPMFVSRAQFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (325)
Q Consensus 74 ~~~~~~~~~~~~yl~~~a~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (325)
........++.++..+...+ .++. .+..+..-+ +.+...|...++ +... +.+|+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~---~i~G~a~f~----~~~~v~v~~~~g-----~~~~-~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN---YENAYAEFV----DKHRIKATNKKG-----KEKI-YSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEc----CCCEEEEeccCC-----CceE-EEeCEEE
Confidence 00112333444444333322 2322 121222111 123333332222 1157 8999999
Q ss_pred EcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (325)
Q Consensus 143 iAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~ 222 (325)
+||| +.|..|++||.+.. .+.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|. .+
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~ 214 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--IL 214 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--cc
Confidence 9999 78888999987543 123322222 1224578999999999999999999999999999984 46
Q ss_pred echhhHHHHH
Q 020533 223 LSREMVYLGV 232 (325)
Q Consensus 223 ~p~~~~~~~~ 232 (325)
+|..+.++..
T Consensus 215 l~~~d~~~~~ 224 (484)
T TIGR01438 215 LRGFDQDCAN 224 (484)
T ss_pred ccccCHHHHH
Confidence 6665555443
No 38
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.82 E-value=1.6e-19 Score=180.70 Aligned_cols=169 Identities=20% Similarity=0.263 Sum_probs=122.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||||||||+||..|+++|++|+|||+.+.+||..++. ++ .|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------IP---------~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------IP---------EFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------CC---------CCcChHHHHH
Confidence 46899999999999999999999999999999999999975532 22 2233346667
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++.+|+.. +.++.+- ..+++++. .. ..||.|++|||. ..|+.+++||.+.
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl---- 415 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL---- 415 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence 7677777788654 6666541 12444432 34 578999999996 3678888988643
Q ss_pred CCCCccEEecCCCC---------------CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533 166 ATGTGEVIHSTQYK---------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (325)
Q Consensus 166 ~~~~g~~~~~~~~~---------------~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~ 227 (325)
.| ++...++. ......||+|+|||+|++|+|+|..+.+.|++|++++|++...+|...
T Consensus 416 ---~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~ 488 (944)
T PRK12779 416 ---LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV 488 (944)
T ss_pred ---cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH
Confidence 22 12111111 012346899999999999999999999999999999998754555433
No 39
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.82 E-value=1.2e-19 Score=179.77 Aligned_cols=170 Identities=20% Similarity=0.228 Sum_probs=117.5
Q ss_pred EEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
|+|||+|++|+.+|..|++. +++|+|||+++.++ |..+.+ +. ......+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH------------HHCCCCCHHHccCC
Confidence 68999999999999999875 46999999998754 221111 00 00011122333333
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~ 166 (325)
..++.++.++.. +++++|++++... +.|++.++ .+ +.||+||+||| +.|+.|++||.+..
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~~---- 119 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADKK---- 119 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCCC----
Confidence 344556667554 8899999997653 56777653 56 89999999999 77999999997642
Q ss_pred CCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533 167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (325)
Q Consensus 167 ~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~ 225 (325)
+ ++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++++
T Consensus 120 ---~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~ 178 (785)
T TIGR02374 120 ---G-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAK 178 (785)
T ss_pred ---C-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhh
Confidence 2 2222211111 11247899999999999999999999999999999988 44443
No 40
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.82 E-value=5.1e-19 Score=166.41 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=117.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecC--------CCCCCccCC-CCCCceEeecCCCcc----CCCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFP 71 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~--------~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~ 71 (325)
.+|||+|||+|++|..+|..+++. |.+|+|+|+. ..+||++-+ .+.|+..+....... ....+...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999997 9999999984 579998754 344432221111000 00000000
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHc------------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC-CceeEEEEE
Q 020533 72 SS-YPMFVSRAQFIEHLDHYVSHF------------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSP-GREIEEYYS 137 (325)
Q Consensus 72 ~~-~~~~~~~~~~~~yl~~~a~~~------------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~-~~~~~~~~~ 137 (325)
.. ...-....++.++.+...++. ++. +..+. . ... +.+ +|.+.....+ +.+... ++
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~G~-a---~f~-~~~--~v~V~~~~~~~~~~~~~-~~ 151 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFLGW-G---ALE-DKN--VVLVRESADPKSAVKER-LQ 151 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEEE-E---EEc-cCC--EEEEeeccCCCCCcceE-EE
Confidence 00 000123334444443332221 211 11111 1 111 122 3444321100 001257 99
Q ss_pred eCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhc---cCeEEE
Q 020533 138 GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSL 214 (325)
Q Consensus 138 ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~---~~~v~~ 214 (325)
||+||+||| +.|..|++||.+.. +.+.+... ....+++++|||+|.+|+|+|..+... |.+||+
T Consensus 152 ~d~lIIATG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl 218 (486)
T TIGR01423 152 AEHILLATG--SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL 218 (486)
T ss_pred CCEEEEecC--CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence 999999999 77888999986532 22211111 122468999999999999999877655 899999
Q ss_pred EEecCCeeechhhHHHHH
Q 020533 215 VVRSPVHVLSREMVYLGV 232 (325)
Q Consensus 215 ~~r~~~~~~p~~~~~~~~ 232 (325)
+.|.+ .++|..+.++..
T Consensus 219 i~~~~-~il~~~d~~~~~ 235 (486)
T TIGR01423 219 CYRNN-MILRGFDSTLRK 235 (486)
T ss_pred EecCC-ccccccCHHHHH
Confidence 99998 566765555443
No 41
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.82 E-value=2.8e-19 Score=177.33 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=119.2
Q ss_pred CeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
.+|+|||+|++|+.+|..|+++ +++|+||++++.++ |..+.+. .. +. . ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~--~~---~~---------~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLS--SY---FS---------H-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcch--Hh---Hc---------C-CCHHHc
Confidence 4899999999999999999764 47999999998753 3322211 00 00 0 112233
Q ss_pred HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (325)
Q Consensus 84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~ 163 (325)
.....++.++.++.. +.+++|.+++... ..|.+.++ .. ++||+||+||| +.|..|++||.+..
T Consensus 62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~- 124 (847)
T PRK14989 62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ- 124 (847)
T ss_pred cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC-
Confidence 333445556667554 8888999887643 45666543 56 89999999999 78999999997642
Q ss_pred cCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (325)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~ 225 (325)
+ ++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|+
T Consensus 125 ------~-v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~ 183 (847)
T PRK14989 125 ------D-CFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAE 183 (847)
T ss_pred ------C-eEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhh
Confidence 2 2222111111 12257899999999999999999999999999999988 45553
No 42
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.81 E-value=3.9e-18 Score=160.46 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=120.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCc----cCCCCCCCCCC--CCCCCCH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSS--YPMFVSR 80 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~ 80 (325)
++|+|||+|++|+.+|..++++|.+|+++|++. +||++.. .+.|+..+...... .....+..... .......
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 489999999999999999999999999999875 8887754 33332211100000 00000000000 0001122
Q ss_pred HHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
..+.++ +.+.++++++.. +. .++..++...+.....|+..++ +..+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~~~~~~~~~~v~V~~~~g-----~~~~-~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRV--IA-GRGRLIDPGLGPHRVKVTTADG-----GEET-LDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EE-EEEEEeecccCCCEEEEEeCCC-----ceEE-EecCEEEEcCC--C
Confidence 233333 333344455432 33 3444433111234555655433 1147 89999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (325)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~ 229 (325)
.|..|+.++.+. ..++++.+..+. ...+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+..
T Consensus 150 ~p~~~p~~~~~~--------~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~ 219 (466)
T PRK07845 150 SPRILPTAEPDG--------ERILTWRQLYDL-DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD 219 (466)
T ss_pred CCCCCCCCCCCC--------ceEEeehhhhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence 676655443321 134444443332 2346899999999999999999999999999999988 577765544
Q ss_pred HH
Q 020533 230 LG 231 (325)
Q Consensus 230 ~~ 231 (325)
..
T Consensus 220 ~~ 221 (466)
T PRK07845 220 AA 221 (466)
T ss_pred HH
Confidence 43
No 43
>PTZ00058 glutathione reductase; Provisional
Probab=99.81 E-value=4.5e-19 Score=168.68 Aligned_cols=204 Identities=17% Similarity=0.219 Sum_probs=121.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC----CCCCCCCCCCCCCCCH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (325)
.+|||+|||||++|+.+|..+++.|.+|+|+|++ .+||++-+ .+.|+..+........ ...+..... .-...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~--~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQ--FSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCcc--CccCH
Confidence 4689999999999999999999999999999997 68987643 4444433222111110 000000000 01122
Q ss_pred HHHHHH-----------HHHHHHHcCCCceeeeCe-EEEE---EE----------E-cCCCCcEEEEEe---ecCCCCce
Q 020533 81 AQFIEH-----------LDHYVSHFNIGPSIRYQR-SVES---AS----------Y-DEATNMWNVKAS---NLLSPGRE 131 (325)
Q Consensus 81 ~~~~~y-----------l~~~a~~~~l~~~i~~~~-~V~~---i~----------~-~~~~~~~~v~~~---~~~~~~~~ 131 (325)
..+.++ +.+..++.++.. ..++ ++.+ +. . ..++...+|... ...++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--- 198 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence 222222 223334444432 3332 1111 00 0 001112223210 01111
Q ss_pred eEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCe
Q 020533 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (325)
Q Consensus 132 ~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~ 211 (325)
.+ ++||+||+||| +.|..|++||.+. ++.+..+.+... +++|+|||+|.+|+|+|..++..|.+
T Consensus 199 -~~-i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~ 262 (561)
T PTZ00058 199 -QV-IEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAE 262 (561)
T ss_pred -cE-EECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCc
Confidence 56 89999999999 7888899988642 234433333222 79999999999999999999999999
Q ss_pred EEEEEecCCeeechhhHHHHHHH
Q 020533 212 TSLVVRSPVHVLSREMVYLGVVL 234 (325)
Q Consensus 212 v~~~~r~~~~~~p~~~~~~~~~~ 234 (325)
||++.|.+ .++|..+.++...+
T Consensus 263 Vtli~~~~-~il~~~d~~i~~~l 284 (561)
T PTZ00058 263 SYIFARGN-RLLRKFDETIINEL 284 (561)
T ss_pred EEEEEecc-cccccCCHHHHHHH
Confidence 99999988 67776665554433
No 44
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.81 E-value=6e-19 Score=165.98 Aligned_cols=201 Identities=16% Similarity=0.165 Sum_probs=118.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC-CCC---CCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPH---LPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~ 81 (325)
+|||+||||||+|+++|..+++.|.+|+|+|+++.+||++.+ .+.|+..+......+. ... ..+.-....-....
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 489999999999999999999999999999988889998643 3344322111111110 000 00000000111222
Q ss_pred HHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 82 ~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
++.++... ..+..++.. ..+. .+.. +.+.+.|...++ +..+ ++||+||+||| +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~----a~~~-~~~~v~v~~~~g-----~~~~-~~~d~lVIATG--s~ 147 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW----GRLD-GVGKVVVKAEDG-----SETQ-LEAKDIVIATG--SE 147 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE----EEEc-cCCEEEEEcCCC-----ceEE-EEeCEEEEeCC--CC
Confidence 32222222 222223221 2211 1222 124444544332 1257 89999999999 55
Q ss_pred CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (325)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~ 230 (325)
|. .+||.+.. ...++++..... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.+.
T Consensus 148 p~--~ipg~~~~------~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~~~ 217 (466)
T PRK06115 148 PT--PLPGVTID------NQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDTET 217 (466)
T ss_pred CC--CCCCCCCC------CCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCHHH
Confidence 53 35665421 122444433332 22357999999999999999999999999999999988 6777655444
Q ss_pred HH
Q 020533 231 GV 232 (325)
Q Consensus 231 ~~ 232 (325)
..
T Consensus 218 ~~ 219 (466)
T PRK06115 218 AK 219 (466)
T ss_pred HH
Confidence 43
No 45
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.81 E-value=3.6e-19 Score=164.32 Aligned_cols=171 Identities=18% Similarity=0.253 Sum_probs=109.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
.+|+|||||++|+.+|..|++.+. +|+|+++++... |... ..++.+..- ...+ ..+...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~~---~~~~--~~~~~~----- 64 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLLE---DSPQ--LQQVLP----- 64 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHCC---CCcc--ccccCC-----
Confidence 579999999999999999999876 799999987542 2111 011100000 0000 000000
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
.++..+.++. ++.++.|..++.+. ..|.+.++ .+ +.||+||+||| +.|+.|++++...
T Consensus 65 --~~~~~~~~i~--~~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~~---- 122 (396)
T PRK09754 65 --ANWWQENNVH--LHSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDALG---- 122 (396)
T ss_pred --HHHHHHCCCE--EEcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcCC----
Confidence 1222345544 47888899887653 44666543 56 89999999999 6666665554321
Q ss_pred CCCCccEEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
..++......+ .....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .+++
T Consensus 123 ----~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~ 181 (396)
T PRK09754 123 ----ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMG 181 (396)
T ss_pred ----CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchh
Confidence 11222111111 112257899999999999999999999999999999988 4444
No 46
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.81 E-value=1.6e-18 Score=162.62 Aligned_cols=176 Identities=18% Similarity=0.289 Sum_probs=117.4
Q ss_pred eEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
+|+|||||++|+++|..|++.+ .+|+|||+++..+ |... .++.+. ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhcC
Confidence 7999999999999999999875 4899999998653 1100 000000 0011223344444
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~ 166 (325)
..+.++++++. ++++++|++++.++ .. |++.+..++ .... +.||+||+||| +.|..|.+||.+.-
T Consensus 62 ~~~~~~~~gv~--~~~~~~V~~id~~~--~~--v~~~~~~~~--~~~~-~~yd~lviAtG--~~~~~~~i~g~~~~---- 126 (444)
T PRK09564 62 TPEEFIKSGID--VKTEHEVVKVDAKN--KT--ITVKNLKTG--SIFN-DTYDKLMIATG--ARPIIPPIKNINLE---- 126 (444)
T ss_pred CHHHHHHCCCe--EEecCEEEEEECCC--CE--EEEEECCCC--CEEE-ecCCEEEECCC--CCCCCCCCCCcCCC----
Confidence 45556667755 47899999998754 33 444432111 1123 34999999999 77888888887531
Q ss_pred CCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 167 TGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 167 ~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
.+++...+.+. ....+++|+|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|
T Consensus 127 ----~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~ 186 (444)
T PRK09564 127 ----NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILP 186 (444)
T ss_pred ----CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCc
Confidence 23433332211 12357899999999999999999999999999999887 4444
No 47
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.81 E-value=4.4e-19 Score=165.00 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=112.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
.+++|+|||||++|+.+|+.|.+.+.+|+|||+++..- |..+ ++..........++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 35789999999999999999987788999999987421 1100 0000011122334444
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC----CCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL----SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~----~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~ 161 (325)
.+...++.++.. ....+|++++.++ ....+...... . ...+ +.||+||+||| +.+..|.+||.++
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~---~g~~-i~yD~LViAtG--s~~~~~~ipG~~e 135 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANV---NTFS-VPYDKLVVAHG--ARPNTFNIPGVEE 135 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccC---CceE-ecCCEEEECCC--cccCCCCCCCHHH
Confidence 455556555543 5667899998754 44444221110 1 1157 89999999999 7788888888754
Q ss_pred cccCCCCCccEEecCCC-------------CC-C--CCCCCCeEEEECcCCCHHHHHHHHhhc--------------cCe
Q 020533 162 FCSSATGTGEVIHSTQY-------------KN-G--KPYGGKNVLVVGSGNSGMEIALDLANH--------------AAK 211 (325)
Q Consensus 162 ~~~~~~~~g~~~~~~~~-------------~~-~--~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------~~~ 211 (325)
.. .. -..+-+...+ .+ + ...+.++++|||+|.+|+|+|..|+.. +.+
T Consensus 136 ~~--~~-~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~ 212 (424)
T PTZ00318 136 RA--FF-LKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECK 212 (424)
T ss_pred cC--CC-CCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCE
Confidence 20 00 0000000000 00 0 011235899999999999999999863 578
Q ss_pred EEEEEecCCeeec
Q 020533 212 TSLVVRSPVHVLS 224 (325)
Q Consensus 212 v~~~~r~~~~~~p 224 (325)
|+++++.+ .++|
T Consensus 213 Vtlv~~~~-~ll~ 224 (424)
T PTZ00318 213 VTVLEAGS-EVLG 224 (424)
T ss_pred EEEEcCCC-cccc
Confidence 99999987 3444
No 48
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.81 E-value=2.5e-19 Score=161.33 Aligned_cols=223 Identities=18% Similarity=0.210 Sum_probs=144.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (325)
+++|||||||++|+.+|..|.++. .+++++|+++..- +..+. ++-...-.+..++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL---------------~eva~g~l~~~~i~ 60 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLL---------------YEVATGTLSESEIA 60 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhh---------------hhhhcCCCChhhee
Confidence 468999999999999999999974 8999999998521 11000 00011223344555
Q ss_pred HHHHHHHHHcC-CCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533 85 EHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (325)
Q Consensus 85 ~yl~~~a~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~ 163 (325)
.-++..+...+ +. ....+|++|+.+. -+|++.+. .. +.||+||+|+| +.+..+.+||..+++
T Consensus 61 ~p~~~~~~~~~~v~---~~~~~V~~ID~~~----k~V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~a 123 (405)
T COG1252 61 IPLRALLRKSGNVQ---FVQGEVTDIDRDA----KKVTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEYA 123 (405)
T ss_pred ccHHHHhcccCceE---EEEEEEEEEcccC----CEEEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHhC
Confidence 55666666444 22 4556899998765 45777763 56 89999999999 889999999987651
Q ss_pred -------cCCCCCccEEecCCCCC-CCC-CCCCeEEEECcCCCHHHHHHHHhhccC-------------eEEEEEecCCe
Q 020533 164 -------SSATGTGEVIHSTQYKN-GKP-YGGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVVRSPVH 221 (325)
Q Consensus 164 -------~~~~~~g~~~~~~~~~~-~~~-~~~~~v~VvG~G~s~~e~a~~l~~~~~-------------~v~~~~r~~~~ 221 (325)
++...+.++....+-.+ ... ..-.+++|||+|.+|+|+|.+|++... +|+++++.| .
T Consensus 124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ 202 (405)
T COG1252 124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-R 202 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-h
Confidence 00000001110000000 000 112379999999999999999987632 677777777 4
Q ss_pred eechhhHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC
Q 020533 222 VLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ 301 (325)
Q Consensus 222 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~ 301 (325)
+||.....++ ....+.|.+-+|++..+
T Consensus 203 ILp~~~~~l~-----------------------------------------------------~~a~~~L~~~GV~v~l~ 229 (405)
T COG1252 203 ILPMFPPKLS-----------------------------------------------------KYAERALEKLGVEVLLG 229 (405)
T ss_pred hccCCCHHHH-----------------------------------------------------HHHHHHHHHCCCEEEcC
Confidence 5554333222 22445577778888887
Q ss_pred --CeeeecCceEEeeecc-eecCCC
Q 020533 302 --NSQIGAQTRTELLLKT-WLGTDT 323 (325)
Q Consensus 302 --i~~~~~~~~v~~~dg~-~~~~d~ 323 (325)
|+++++++ |++++|. ++++||
T Consensus 230 ~~Vt~v~~~~-v~~~~g~~~I~~~t 253 (405)
T COG1252 230 TPVTEVTPDG-VTLKDGEEEIPADT 253 (405)
T ss_pred CceEEECCCc-EEEccCCeeEecCE
Confidence 88988876 7788887 488876
No 49
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.80 E-value=6e-19 Score=165.02 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||||++||++|..|++.|++|+|||+.+.+||.+... ++. +....++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPE---------FRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCC---------ccCCHHHHH
Confidence 46799999999999999999999999999999999999875421 111 111235555
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++++++.. ++++.+. ..+.+.+ .. ..+|+||+|||. +.|..|.+||.+.
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~---- 241 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLVG----------KTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL---- 241 (449)
T ss_pred HHHHHHHhCCcEE--EeCCccC----------CcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence 5555666677543 6666431 1233332 23 468999999995 2678888888753
Q ss_pred CCCCccEEecCCCC--------------CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 166 ~~~~g~~~~~~~~~--------------~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
.+ +++..++. ......+++|+|||+|++|+|+|..+.+.|.+||+++|++..-+|
T Consensus 242 ---~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~ 310 (449)
T TIGR01316 242 ---CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT 310 (449)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence 22 23222111 112346899999999999999999999999999999998743333
No 50
>PLN02546 glutathione reductase
Probab=99.80 E-value=1.4e-19 Score=172.12 Aligned_cols=195 Identities=15% Similarity=0.157 Sum_probs=120.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEec---------CCCCCCccCC-CCCCceEeecCCCcc----CCCCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPS 72 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~---------~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~ 72 (325)
.|||+|||+|++|+.+|..++++|.+|+|+|+ ...+||++-+ .+.|.-.+....... ....+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 48999999999999999999999999999996 2467887754 333332211110000 000000000
Q ss_pred CCCCCCCHHH-----------HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533 73 SYPMFVSRAQ-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (325)
Q Consensus 73 ~~~~~~~~~~-----------~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (325)
....-..... +.+++.+..++.++.. +. .+++.++. . +|.+. + .. +.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i~-G~a~~vd~----~--~V~v~-G-------~~-~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--IE-GRGKIVDP----H--TVDVD-G-------KL-YTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-eEEEEccC----C--EEEEC-C-------EE-EECCEE
Confidence 0000112222 2333444444445432 22 23333321 2 34442 1 57 899999
Q ss_pred EEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (325)
Q Consensus 142 IiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~ 221 (325)
|+||| +.|..|++||.+.. +++..... ....+++|+|||+|.+|+|+|..++..+.+|+++.|.+ .
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~ 286 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K 286 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence 99999 88889999987532 22222211 22357899999999999999999999999999999988 5
Q ss_pred eechhhHHHHHH
Q 020533 222 VLSREMVYLGVV 233 (325)
Q Consensus 222 ~~p~~~~~~~~~ 233 (325)
++|..+.++...
T Consensus 287 il~~~d~~~~~~ 298 (558)
T PLN02546 287 VLRGFDEEVRDF 298 (558)
T ss_pred cccccCHHHHHH
Confidence 667655554433
No 51
>PRK07846 mycothione reductase; Reviewed
Probab=99.79 E-value=1.4e-18 Score=162.74 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=117.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC----CCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (325)
+||++|||+||+|..+|.. ..|.+|+|+|+. .+||++-+ .+.|+..+........ ...+..... ..-....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 3899999999999998876 459999999985 58887654 3444332111111100 000000000 0123455
Q ss_pred HHHHHHHHHHHHcC---CCce-e-eeCeEEEE--EEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 82 QFIEHLDHYVSHFN---IGPS-I-RYQRSVES--ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 82 ~~~~yl~~~a~~~~---l~~~-i-~~~~~V~~--i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
++.++.....+++. .... + ..+.++.. .... +..+|++.++ .+ ++||+||+||| +.|..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~---~~~~V~v~~g-------~~-~~~d~lViATG--s~p~~p 143 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI---GPKTLRTGDG-------EE-ITADQVVIAAG--SRPVIP 143 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe---cCCEEEECCC-------CE-EEeCEEEEcCC--CCCCCC
Confidence 66666655544431 1100 0 01111111 0111 2234655432 46 89999999999 788999
Q ss_pred CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (325)
Q Consensus 155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~ 230 (325)
++||.+.. .+..+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++
T Consensus 144 ~i~g~~~~--------~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~ 209 (451)
T PRK07846 144 PVIADSGV--------RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDI 209 (451)
T ss_pred CCCCcCCc--------cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHH
Confidence 99886432 1222222221 22346899999999999999999999999999999998 4555544433
No 52
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-18 Score=137.70 Aligned_cols=177 Identities=16% Similarity=0.256 Sum_probs=135.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC----CCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~----~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (325)
..+|+|||+||++..+|.++++..++.++||-.. ..||.. ......-.||.| |.-....+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQL----------tTTT~veNfPGF------Pdgi~G~~ 71 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQL----------TTTTDVENFPGF------PDGITGPE 71 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCcee----------eeeeccccCCCC------CcccccHH
Confidence 3489999999999999999999999999999643 123321 111111122222 23356789
Q ss_pred HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc-c-
Q 020533 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL-C- 160 (325)
Q Consensus 83 ~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~-~- 160 (325)
+.+.+++.++++|.. .+...|.+++... ..|.+.++. +. +.+|.||+|||. ..+...+||. +
T Consensus 72 l~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atGA--sAkRl~~pg~ge~ 135 (322)
T KOG0404|consen 72 LMDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATGA--SAKRLHLPGEGEG 135 (322)
T ss_pred HHHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEeccc--ceeeeecCCCCcc
Confidence 999999999999987 5667788888765 678888765 56 899999999995 4444556665 3
Q ss_pred ccccCCCCCccEEecCCCCCCCC--CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533 161 SFCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (325)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~--~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~ 221 (325)
.| ..+-+.++..++... +++|-.+|||+|.+|+|-|..|...+++|++++|+++.
T Consensus 136 ~f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f 192 (322)
T KOG0404|consen 136 EF------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF 192 (322)
T ss_pred hH------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh
Confidence 36 667777777777554 89999999999999999999999999999999999953
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.78 E-value=2.9e-18 Score=169.72 Aligned_cols=171 Identities=25% Similarity=0.322 Sum_probs=117.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+||||||+||++|..|+++|++|+|||+.+.+||.++.. ++. +....++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP~---------~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IPQ---------FRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------ccc---------ccccHHHHH
Confidence 45799999999999999999999999999999999999876531 111 111234455
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
+..+.+.++++. +++++.+ .+.. +.. .. ..+|+||+|||.. .+..+.++|.+.
T Consensus 594 ~die~l~~~GVe--~~~gt~V-di~l-----------e~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVK--FEFGCSP-DLTV-----------EQL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCE--EEeCcee-EEEh-----------hhh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence 555666677754 4888766 2211 111 34 5689999999963 344456776541
Q ss_pred CCCCccEEecCCCCC------CCCCCCCeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecCCeeechhhHHHHH
Q 020533 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHVLSREMVYLGV 232 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~~~~~p~~~~~~~~ 232 (325)
.++++.++.. .....+++|+|||+|++|+|+|..+.+.+ .+|++++|++...+|....++..
T Consensus 647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~ 716 (1019)
T PRK09853 647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEE 716 (1019)
T ss_pred -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHH
Confidence 1222221111 12235899999999999999999998884 48999999986677766554433
No 54
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.77 E-value=1.4e-18 Score=167.48 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=125.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CCCCCccCC-CCCCceEeecC-------C-----CccCCCC--CC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASIWKK-YSYDRLRLHLA-------K-----QFCQLPH--LP 69 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~~Gg~w~~-~~y~~~~~~~~-------~-----~~~~~~~--~~ 69 (325)
.+|||+|||+|++|+.+|..+++.|.+|+|||+. +.+||++-+ .+.|+..+... + ..+.+.. ++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 3689999999999999999999999999999975 468997744 33332211100 0 0011110 00
Q ss_pred ------CC--CC--CCCCCCHHHHHHHHHHHHHHcCC--Cc-----eeeeCeEEEEEEEcCC--CCcEEEEEeecCCCCc
Q 020533 70 ------FP--SS--YPMFVSRAQFIEHLDHYVSHFNI--GP-----SIRYQRSVESASYDEA--TNMWNVKASNLLSPGR 130 (325)
Q Consensus 70 ------~~--~~--~~~~~~~~~~~~yl~~~a~~~~l--~~-----~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~ 130 (325)
.+ +. ...-.....+.++.+...++..- .. .+...++.+.+..... .+..+|+... .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~--~g-- 270 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEK--SG-- 270 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEcc--CC--
Confidence 00 00 01123556666766665554310 00 0011122222222110 0112233321 11
Q ss_pred eeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccC
Q 020533 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (325)
Q Consensus 131 ~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~ 210 (325)
.+ +.+|+||+||| +.|..|++++.+.. .++.+.+... ....+++|+|||+|.+|+|+|..++..|.
T Consensus 271 --~~-i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~ 336 (659)
T PTZ00153 271 --KE-FKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGS 336 (659)
T ss_pred --EE-EECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCC
Confidence 57 89999999999 78888776554322 3444433322 22347899999999999999999999999
Q ss_pred eEEEEEecCCeeechhhHHHHHHH
Q 020533 211 KTSLVVRSPVHVLSREMVYLGVVL 234 (325)
Q Consensus 211 ~v~~~~r~~~~~~p~~~~~~~~~~ 234 (325)
+||++.+.+ .++|..+.++...+
T Consensus 337 eVTLIe~~~-~ll~~~d~eis~~l 359 (659)
T PTZ00153 337 EVVSFEYSP-QLLPLLDADVAKYF 359 (659)
T ss_pred eEEEEeccC-cccccCCHHHHHHH
Confidence 999999998 67776666554443
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.77 E-value=2.8e-18 Score=170.09 Aligned_cols=169 Identities=24% Similarity=0.326 Sum_probs=118.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+||||||+||++|..|+++|++|+|||+.+.+||.+.+ .++.+.+| .++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~rlp---------~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPEFRLP---------KKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCCCCC---------HHHHH
Confidence 4679999999999999999999999999999999989987542 12222111 23455
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++++++.. +.++.+. ..+++++. .. ..||+||+|||. +.|+.|++||.+.
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~---- 540 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG----------KTITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENS---- 540 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC----------CcCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCC----
Confidence 5555666777544 7776541 11333322 34 578999999995 2577788888653
Q ss_pred CCCCccEEecCCCC-------------CCCCCCCCeEEEECcCCCHHHHHHHHhhccCe-EEEEEecCCeeechhh
Q 020533 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREM 227 (325)
Q Consensus 166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~~~~~p~~~ 227 (325)
.| ++++.++. ......+++|+|||+|++|+|+|..+.+.|.+ ||+++|++...+|...
T Consensus 541 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~ 612 (752)
T PRK12778 541 ---NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612 (752)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 12 22222111 11234689999999999999999999999987 9999998755555543
No 56
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.77 E-value=5.8e-18 Score=159.08 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=118.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-CCCCCceEeecCCCccC----CCCCCCCCC-CCCCCCHHH
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQ 82 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-~~~y~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 82 (325)
+|+||||||+|+++|..|++.|.+|+|+|+++ +||++. ..+.|+..+......+. ...+..+.. .....+..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 79999999999999999999999999999975 677654 33444322110000000 000000000 001223445
Q ss_pred HHHHHHHHHHH-----------cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 83 FIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 83 ~~~yl~~~a~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
+.++..+..++ .++. .+..++..+ +.+...|...++ ..+ ++||+||+||| +.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~----~~~~v~v~~~~~------~~~-~~~d~lviATG--s~p 144 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFE----TDHRVRVEYGDK------EEV-VDAEQFIIAAG--SEP 144 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEc----cCCEEEEeeCCC------cEE-EECCEEEEeCC--CCC
Confidence 54444433332 2222 122222222 124444544221 157 89999999999 677
Q ss_pred CCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHH
Q 020533 152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG 231 (325)
Q Consensus 152 ~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~ 231 (325)
..|++++.+.. .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++.
T Consensus 145 ~~~p~~~~~~~--------~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~ 214 (458)
T PRK06912 145 TELPFAPFDGK--------WIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIA 214 (458)
T ss_pred CCCCCCCCCCC--------eEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHH
Confidence 76666664321 2444433322 22346899999999999999999999999999999998 67776555444
Q ss_pred H
Q 020533 232 V 232 (325)
Q Consensus 232 ~ 232 (325)
.
T Consensus 215 ~ 215 (458)
T PRK06912 215 H 215 (458)
T ss_pred H
Confidence 3
No 57
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.76 E-value=3.6e-18 Score=160.45 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=117.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+... ++ .+....++.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------ip---------~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------IP---------EFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------CC---------CccCCHHHHH
Confidence 45799999999999999999999999999999999998875421 11 1112236667
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
+..+.++++++.. ++++.+.. .+.+.+ .. +.||+||+|||.. .|..+.+||.+.
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~~----------~v~~~~--------~~-~~~d~vvlAtGa~-~~~~~~i~G~~~---- 248 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVGR----------DITLDE--------LR-AGYDAVFIGTGAG-LPRFLGIPGENL---- 248 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEECC----------ccCHHH--------HH-hhCCEEEEccCCC-CCCCCCCCCccC----
Confidence 7777777777544 77766511 122222 23 6789999999953 466667887653
Q ss_pred CCCCccEEecCCCCC--------CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechh
Q 020533 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSRE 226 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~--------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~ 226 (325)
.+ +++..++.. .....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|..
T Consensus 249 ---~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~ 314 (457)
T PRK11749 249 ---GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS 314 (457)
T ss_pred ---CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence 22 233221111 112368999999999999999999999987 8999999875556544
No 58
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=9.4e-18 Score=144.09 Aligned_cols=219 Identities=17% Similarity=0.167 Sum_probs=138.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCC----ccCCCCCCCCCCCCCC
Q 020533 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMF 77 (325)
Q Consensus 3 ~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~ 77 (325)
.....+|.+|||||.+|+++|++.+..|.++.++|..-.+||++-. .+.|.-.+..... +.+..++.++.....-
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 3345789999999999999999999999999999999889998743 3333322221111 1111122222211111
Q ss_pred CCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEE---cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 78 VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
..+..+.+--.++..++ ++..+..-+..|.-++- -..++...|...++ .... ++++++++|+| +.|.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~-----~~~~-Ytak~iLIAtG--g~p~~ 167 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDG-----TKIV-YTAKHILIATG--GRPII 167 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCC-----eeEE-EecceEEEEeC--CccCC
Confidence 22333333222222221 11111122223332211 11234455555554 2256 89999999999 88999
Q ss_pred CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHH
Q 020533 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (325)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~ 233 (325)
|++||.+.- +.|..+.+ .+..+||++|||+|++|+|+|.-++.+|.+++++.|.. .+|..++..++..
T Consensus 168 PnIpG~E~g----------idSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~ 235 (478)
T KOG0405|consen 168 PNIPGAELG----------IDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDL 235 (478)
T ss_pred CCCCchhhc----------cccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHH
Confidence 999997642 55555554 34457999999999999999999999999999999999 6777777766665
Q ss_pred HHhhCCHH
Q 020533 234 LFKYVPFG 241 (325)
Q Consensus 234 ~~~~~p~~ 241 (325)
+...+..+
T Consensus 236 v~~~~~~~ 243 (478)
T KOG0405|consen 236 VTEHLEGR 243 (478)
T ss_pred HHHHhhhc
Confidence 55544443
No 59
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.76 E-value=1.1e-17 Score=156.05 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=113.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHh--cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~--~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
.+++|+||||||+|+++|..|++ .|++|+|||+.+.+||.+++..- +.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence 45789999999999999999987 69999999999999987664210 123333456
Q ss_pred HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (325)
Q Consensus 84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~ 163 (325)
...+.++++..++.. +.|.++. ..++.++ .. ..||.||+|||.. .++.+++||.+.
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg----------~dvtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~-- 137 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG----------RDVSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL-- 137 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC----------ccccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence 666666666655432 4554441 1133332 23 4689999999953 235567888653
Q ss_pred cCCCCCccEEecCCC----------CC--CCCCCCCeEEEECcCCCHHHHHHHHhhc--------------------c-C
Q 020533 164 SSATGTGEVIHSTQY----------KN--GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A 210 (325)
Q Consensus 164 ~~~~~~g~~~~~~~~----------~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------------~-~ 210 (325)
.| ++...++ .. .....+++|+|||+|++|+|+|..|.+. + .
T Consensus 138 -----~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 138 -----PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred -----CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 22 2222211 00 0123589999999999999999998775 4 4
Q ss_pred eEEEEEecCCeeechhhH
Q 020533 211 KTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 211 ~v~~~~r~~~~~~p~~~~ 228 (325)
+|++++|++..-++....
T Consensus 212 ~V~iv~RRg~~~~~ft~~ 229 (491)
T PLN02852 212 KVYLVGRRGPVQAACTAK 229 (491)
T ss_pred EEEEEEcCChHhCCCCHH
Confidence 699999998655544333
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.75 E-value=1.6e-17 Score=150.92 Aligned_cols=176 Identities=20% Similarity=0.247 Sum_probs=114.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (325)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
+...++|+|||+|++|+++|..|++.|++++++|+.+.+||.+... ++.. ..+.+.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~~--------~~~~~~~ 71 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPEF--------RIPIERV 71 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cccc--------ccCHHHH
Confidence 3346799999999999999999999999999999999988765321 0000 1123344
Q ss_pred HHHHHHHHHHcCCCceeeeCeEEEEEEE--cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533 84 IEHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (325)
Q Consensus 84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~ 161 (325)
...+.++.+ .++. ++.++.+..+.. ......|....... +... +.||+||+|||. ..|..|++||.+.
T Consensus 72 ~~~~~~l~~-~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~d~lviAtGs-~~~~~~~ipg~~~ 141 (352)
T PRK12770 72 REGVKELEE-AGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSL-----EELV-KKYDAVLIATGT-WKSRKLGIPGEDL 141 (352)
T ss_pred HHHHHHHHh-CCeE--EecCcEEeeccccccccccccccccCCH-----HHHH-hhCCEEEEEeCC-CCCCcCCCCCccc
Confidence 445555444 4654 477877765432 11112232221111 1135 689999999995 2467788888653
Q ss_pred cccCCCCCccEEecC--------------CCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCe-EEEEEecCC
Q 020533 162 FCSSATGTGEVIHST--------------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPV 220 (325)
Q Consensus 162 ~~~~~~~~g~~~~~~--------------~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~~ 220 (325)
.+ ++.+. .+.....+.+++++|||+|.+|+|+|..+...|.+ |+++.|++.
T Consensus 142 -------~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 142 -------PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred -------cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 11 22111 01111234589999999999999999999988886 999998763
No 61
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-17 Score=143.40 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=134.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..|||+|||+||+|-++|.+.+++|++.-++- +++||.-... +.+..+- .-.+...+++..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT-------------~~IENfI----sv~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT-------------MGIENFI----SVPETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc-------------cchhhee----ccccccchHHHH
Confidence 46899999999999999999999999886552 3456542210 1111110 012345678899
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
.|.+..++|++.. .--.+.++++... ..+...|+++++ .. +.++.+|+|||+. .+-..+||.++|
T Consensus 271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstGAr--WRn~nvPGE~e~-- 336 (520)
T COG3634 271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATGAR--WRNMNVPGEDEY-- 336 (520)
T ss_pred HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecCcc--hhcCCCCchHHH--
Confidence 9999999998764 4444555665532 234677888876 56 8999999999954 444579999999
Q ss_pred CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
+..-+..+..++...|+||+|+|||+|+||+|.|-+|+....+||++.-.+
T Consensus 337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 888888899999999999999999999999999999999999999988776
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.75 E-value=8.8e-18 Score=163.60 Aligned_cols=171 Identities=18% Similarity=0.251 Sum_probs=117.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||||++||++|..|++.|++|+|||+++.+||.|+.. ++. +....++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IPR---------FRLPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CCC---------CCCCHHHHH
Confidence 35799999999999999999999999999999999999987532 111 112234555
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
+..+.+..+++.. ++++.+. . .++..+ .. ..+|.||+|||.. .+..+.+||.+.
T Consensus 248 ~~~~~l~~~Gv~i--~~~~~v~-~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~---- 301 (652)
T PRK12814 248 ADIAPLRAMGAEF--RFNTVFG-R---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL---- 301 (652)
T ss_pred HHHHHHHHcCCEE--EeCCccc-C---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc----
Confidence 5666667777543 7776541 1 122222 22 3589999999953 234567888643
Q ss_pred CCCCccEEecCCCC-----CCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhHHH
Q 020533 166 ATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMVYL 230 (325)
Q Consensus 166 ~~~~g~~~~~~~~~-----~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~~~ 230 (325)
.+ ++....+. ......+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|....++
T Consensus 302 ---~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei 368 (652)
T PRK12814 302 ---PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI 368 (652)
T ss_pred ---CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH
Confidence 23 22221111 1234568999999999999999999999986 69999999865677654433
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.75 E-value=1.8e-17 Score=167.30 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=118.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+||||||+||++|..|+++|++|+|||+.+.+||..+.. ++ .+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g---------------ip---------~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG---------------IP---------SFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc---------------CC---------ccCCCHHHHH
Confidence 35799999999999999999999999999999999988764321 11 2222346667
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++++|+.. ++++.+. .. ++.+... .. ..||.||+|||. ..|+.+++||.+.
T Consensus 485 ~~~~~l~~~Gv~~--~~~~~vg--------~~--~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l---- 540 (1006)
T PRK12775 485 REVQRLVDIGVKI--ETNKVIG--------KT--FTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA---- 540 (1006)
T ss_pred HHHHHHHHCCCEE--EeCCccC--------Cc--cCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC----
Confidence 7777777888654 7775431 11 2222210 13 468999999995 2477788998642
Q ss_pred CCCCccEEecCCC--------------CCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhh
Q 020533 166 ATGTGEVIHSTQY--------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREM 227 (325)
Q Consensus 166 ~~~~g~~~~~~~~--------------~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~ 227 (325)
.+ +++..++ .+.....||+|+|||+|++|+|+|..+.+.|. .|++++|+...-+|...
T Consensus 541 ---~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~ 613 (1006)
T PRK12775 541 ---GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARI 613 (1006)
T ss_pred ---CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCH
Confidence 22 3333211 11223468999999999999999999999987 58999988755555443
No 64
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.73 E-value=5.6e-17 Score=148.27 Aligned_cols=168 Identities=17% Similarity=0.269 Sum_probs=108.6
Q ss_pred eEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
+|+|||||++|+.+|.+|.++ +.+|+|+|+++..- |..+ .+..........++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 489999999999999999754 67999999887521 1100 0000011223345655
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
.+.+.++++++. ....+|++++.+. . .|.+.++ .+ +++|+||+||| +.+..|.+||..+.
T Consensus 59 ~~~~~~~~~gv~---~~~~~v~~id~~~--~--~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~--- 118 (364)
T TIGR03169 59 DLRRLARQAGAR---FVIAEATGIDPDR--R--KVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL--- 118 (364)
T ss_pred cHHHHHHhcCCE---EEEEEEEEEeccc--C--EEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence 666777777765 3345888887754 2 5666653 46 89999999999 78888888885432
Q ss_pred CCCCccEEec----CC----CCCC--CCCCCCeEEEECcCCCHHHHHHHHhhc----c--CeEEEEEecCCeeec
Q 020533 166 ATGTGEVIHS----TQ----YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVVRSPVHVLS 224 (325)
Q Consensus 166 ~~~~g~~~~~----~~----~~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~----~--~~v~~~~r~~~~~~p 224 (325)
. ..+.+ .. .... ....+++|+|||+|.+|+|+|..|+.. + .+|+++ +.+ .+++
T Consensus 119 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~ 187 (364)
T TIGR03169 119 ---A-VPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLP 187 (364)
T ss_pred ---c-cccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccc
Confidence 0 00000 00 0000 012357999999999999999999853 3 478888 444 3444
No 65
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=9.7e-17 Score=141.26 Aligned_cols=204 Identities=25% Similarity=0.365 Sum_probs=139.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCCCC-CCceEeecC-----------CCccCCCCCCCC-
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA-----------KQFCQLPHLPFP- 71 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~-----------~~~~~~~~~~~~- 71 (325)
..+|++.||-||+-|+.|+.|...+ .+...+||.+.+- |...+ .++..++++ ...++|-.+-..
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3589999999999999999999975 6899999998753 66543 344444332 111111000000
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533 72 -------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (325)
Q Consensus 72 -------~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA 144 (325)
..-..++++.|+.+|+++.+.++ ..++|+++|+.|...+.+.....-.. +.++ .. ++|+.||++
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~-t~~~----~~-y~ar~lVlg 152 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVV-TANG----TV-YRARNLVLG 152 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEE-cCCC----cE-EEeeeEEEc
Confidence 00125689999999999999998 34499999996633222233331111 1111 46 999999999
Q ss_pred ccCCCCCCCCC-CCCccccccCCCCCccEEecCCCCC-CCCCCCCe-EEEECcCCCHHHHHHHHhhc----cCeEEEEEe
Q 020533 145 SGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKN-GKPYGGKN-VLVVGSGNSGMEIALDLANH----AAKTSLVVR 217 (325)
Q Consensus 145 tG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~-v~VvG~G~s~~e~a~~l~~~----~~~v~~~~r 217 (325)
+| .+|.+|+ +..+. ..+++|++++.+ ..+...|+ |+|||+|.||+|+..+|... ..++.|+.|
T Consensus 153 ~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR 222 (436)
T COG3486 153 VG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITR 222 (436)
T ss_pred cC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeec
Confidence 99 8899985 33332 348999999875 34455555 99999999999999998765 235889999
Q ss_pred cCCeeechhhHHHH
Q 020533 218 SPVHVLSREMVYLG 231 (325)
Q Consensus 218 ~~~~~~p~~~~~~~ 231 (325)
+. -++|.+...++
T Consensus 223 ~~-gf~p~d~Skf~ 235 (436)
T COG3486 223 SS-GFLPMDYSKFG 235 (436)
T ss_pred cC-CCCccccchhh
Confidence 99 67787665443
No 66
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.72 E-value=5.7e-17 Score=140.99 Aligned_cols=215 Identities=13% Similarity=0.121 Sum_probs=136.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccCCCCCC-CC----CCCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQLPHLP-FP----SSYPMFVS 79 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~ 79 (325)
..+||+|||+||+|..||...++.|++.+++|++..+||++.. .+.|+-.+-..+.+|+.-... +. +-++.-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 4699999999999999999999999999999999999998753 444443333333332221110 00 00011223
Q ss_pred HHHHHHHHHHHHHHcC--CCceeeeC-eEEEEEE---EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 80 RAQFIEHLDHYVSHFN--IGPSIRYQ-RSVESAS---YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 80 ~~~~~~yl~~~a~~~~--l~~~i~~~-~~V~~i~---~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
.+.+.+.....++++. +.. .|. .+|+-+. ...+.+..++.-.++ +... +.++.+|+||| | .+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~--lfkknkV~~~kG~gsf~~p~~V~v~k~dg-----~~~i-i~aKnIiiATG--S--eV 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIEN--LFKKNKVTYVKGFGSFLDPNKVSVKKIDG-----EDQI-IKAKNIIIATG--S--EV 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHH--HhhhcCeEEEeeeEeecCCceEEEeccCC-----CceE-EeeeeEEEEeC--C--cc
Confidence 3344444444433321 111 111 1222211 111123333333333 3367 99999999999 3 24
Q ss_pred CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHH
Q 020533 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (325)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~ 233 (325)
+++||++- ....+-|++-.-....-+++++|||+|.+|.|+..-..++|++||++.-.+ .+.|..+.+++..
T Consensus 186 ~~~PGI~I-------DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~ 257 (506)
T KOG1335|consen 186 TPFPGITI-------DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKA 257 (506)
T ss_pred CCCCCeEe-------cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHH
Confidence 46778764 344455555544466678999999999999999999999999999999998 6888888888776
Q ss_pred HHhhCCH
Q 020533 234 LFKYVPF 240 (325)
Q Consensus 234 ~~~~~p~ 240 (325)
+.+.+..
T Consensus 258 ~qr~L~k 264 (506)
T KOG1335|consen 258 FQRVLQK 264 (506)
T ss_pred HHHHHHh
Confidence 6665544
No 67
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.72 E-value=7.8e-17 Score=151.03 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=110.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----CCCCCCCCCCCCCCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (325)
+||++|||+|++|..+|.. ..|.+|+++|++ .+||++-+ .+.|+..+....... ....+..... ..-....
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999998654 469999999985 58887743 344433221111100 0000111000 0112445
Q ss_pred HHHHHHHH-HHHHc-C--C---------CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 82 QFIEHLDH-YVSHF-N--I---------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 82 ~~~~yl~~-~a~~~-~--l---------~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
++.++..+ ..+.. . . ...+..++.+ .. +.++|++.++ .+ ++||+||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~----~~---~~~~V~~~~g-------~~-~~~d~lIiATG-- 140 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHAR----FV---GPRTLRTGDG-------EE-ITGDQIVIAAG-- 140 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEE----Ee---cCCEEEECCC-------cE-EEeCEEEEEEC--
Confidence 55555433 22211 0 0 0111222111 11 2355666442 46 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~ 228 (325)
+.|..|+..+... -.+..+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.
T Consensus 141 s~p~~p~~~~~~~--------~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~ 210 (452)
T TIGR03452 141 SRPYIPPAIADSG--------VRYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE 210 (452)
T ss_pred CCCCCCCCCCCCC--------CEEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH
Confidence 7787776433211 11222222221 11236899999999999999999999999999999988 35554443
Q ss_pred H
Q 020533 229 Y 229 (325)
Q Consensus 229 ~ 229 (325)
+
T Consensus 211 ~ 211 (452)
T TIGR03452 211 D 211 (452)
T ss_pred H
Confidence 3
No 68
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.72 E-value=5.6e-17 Score=161.35 Aligned_cols=169 Identities=22% Similarity=0.292 Sum_probs=110.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
.++|+||||||+||+||..|+++|++|+|||+.+.+||..+.. ++.+ ....++.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~---------rlp~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEF---------RISAESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------cccc---------CCCHHHHHH
Confidence 5799999999999999999999999999999999999875321 1111 111244444
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~ 166 (325)
..+.+..+++.. ++++.. . +..... .. ..+|+||+|||.. .+..+.++|....
T Consensus 593 ~ie~l~~~GVe~--~~g~~~----------d--~~ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~~---- 645 (1012)
T TIGR03315 593 DIELVKFHGVEF--KYGCSP----------D--LTVAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGER---- 645 (1012)
T ss_pred HHHHHHhcCcEE--EEeccc----------c--eEhhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence 455556666543 554310 0 111111 34 5689999999963 2334456664321
Q ss_pred CCCccEEecCCC----CC--CCCCCCCeEEEECcCCCHHHHHHHHhhc-cC-eEEEEEecCCeeechhhHHHH
Q 020533 167 TGTGEVIHSTQY----KN--GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVVRSPVHVLSREMVYLG 231 (325)
Q Consensus 167 ~~~g~~~~~~~~----~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~-~~-~v~~~~r~~~~~~p~~~~~~~ 231 (325)
++.+.++ .. .....+++|+|||+|++|+|+|..+.+. |. +|++++|+....+|....++.
T Consensus 646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~ 713 (1012)
T TIGR03315 646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELE 713 (1012)
T ss_pred -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHH
Confidence 2221111 11 1224589999999999999999998886 64 799999988666676554443
No 69
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.72 E-value=1.1e-16 Score=156.36 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=114.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.+... ++. +....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip~---------~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IPA---------FKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CCC---------ccCCHHHHH
Confidence 45799999999999999999999999999999999999876532 111 111234555
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++++|+.. ++++.|.. .+.... .. ..||.|++|||.+ .+..+.+||.+.
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~----------~i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~---- 435 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK----------DISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA---- 435 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence 5566677777544 77776521 011111 22 4689999999963 333456666543
Q ss_pred CCCCccEE-------------ecCCCCC--CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533 166 ATGTGEVI-------------HSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 166 ~~~~g~~~-------------~~~~~~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~ 228 (325)
.|... ......+ .....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|....
T Consensus 436 ---~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~ 511 (654)
T PRK12769 436 ---PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK 511 (654)
T ss_pred ---CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence 22110 0000101 123568999999999999999999999986 699999987655665444
No 70
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.71 E-value=7.2e-16 Score=156.51 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=112.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
.+||+||||||+||++|..|++.|.+|+|+|+.+.+||.+.... . .. +. .+..++.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~---------~~---------~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---E---------TI---------DG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---c---------cc---------CC-ccHHHHHHH
Confidence 47999999999999999999999999999999999998765321 0 00 00 122233333
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEe--------ecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g 158 (325)
+.+.+..++ ...++.+++|.++.... ....+... .....+ .... +.++.||+||| +.++.|++||
T Consensus 221 ~~~~l~~~~-~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~-~~~~-i~a~~VILATG--a~~r~~pipG 293 (985)
T TIGR01372 221 TVAELTAMP-EVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRE-RLWR-IRAKRVVLATG--AHERPLVFAN 293 (985)
T ss_pred HHHHHhcCC-CcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCcccc-ceEE-EEcCEEEEcCC--CCCcCCCCCC
Confidence 333333342 13447888888774321 11111100 000000 1136 89999999999 6677788888
Q ss_pred ccccccCCCCCccEEecC---CCCC-CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533 159 LCSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (325)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~ 219 (325)
.+. .| ++... .+.. .....+++|+|||+|.+|+|+|..|++.|. .|+++.+++
T Consensus 294 ~~~-------pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 294 NDR-------PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCC-------CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 653 23 22211 1111 123468999999999999999999999995 577777665
No 71
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.70 E-value=4e-16 Score=146.58 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=116.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||+|++|+++|..|+++|++|+|+|+.+.+||.++.. ++. +....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------ip~---------~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------IPS---------FKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------Ccc---------ccCCHHHHH
Confidence 45799999999999999999999999999999999999876531 111 111235666
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
+..+.++++|+.. ++++++.. .+..++ .. ..+|.||+|||... +..+++||.+.
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------~~-~~~D~vilAtGa~~-~~~~~i~g~~~---- 249 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR----------DISLDD--------LL-EDYDAVFLGVGTYR-SMRGGLPGEDA---- 249 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC----------ccCHHH--------HH-hcCCEEEEEeCCCC-CCcCCCCCcCC----
Confidence 7777788888654 78877621 011111 23 46899999999532 22345777543
Q ss_pred CCCCccEEecC--------------CCC--CCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533 166 ATGTGEVIHST--------------QYK--NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 166 ~~~~g~~~~~~--------------~~~--~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~ 228 (325)
.| +++.. ... ......+++++|||+|++|+|+|..+.+.|. +||+++|++...+|....
T Consensus 250 ---~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~ 325 (467)
T TIGR01318 250 ---PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR 325 (467)
T ss_pred ---CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH
Confidence 12 11110 000 0122468999999999999999999999985 799999988666665544
No 72
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.69 E-value=1.2e-16 Score=150.66 Aligned_cols=159 Identities=21% Similarity=0.250 Sum_probs=107.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.++.. ++ .+....++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------IP---------DFKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------CC---------cccCCHHHHH
Confidence 35799999999999999999999999999999999999875431 11 1112234555
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.+.++++.. ++++.+.. + +.... .. ..+|.||+|||.. .+..+.+||.+.
T Consensus 198 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~vvlAtGa~-~~~~l~ipG~~~---- 251 (471)
T PRK12810 198 RRIELMEAEGIEF--RTNVEVGK-D---------ITAEE--------LL-AEYDAVFLGTGAY-KPRDLGIPGRDL---- 251 (471)
T ss_pred HHHHHHHhCCcEE--EeCCEECC-c---------CCHHH--------HH-hhCCEEEEecCCC-CCCcCCCCCccC----
Confidence 5556677777554 77776521 0 11111 23 5789999999952 356667888643
Q ss_pred CCCCccEEecC-------------CCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEec
Q 020533 166 ATGTGEVIHST-------------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (325)
Q Consensus 166 ~~~~g~~~~~~-------------~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~ 218 (325)
.| +.... .........+++|+|||+|++|+|+|..+.+.|. +|+...+.
T Consensus 252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 252 ---DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred ---CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 22 22211 0111124568999999999999999999888875 68854443
No 73
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.1e-15 Score=128.30 Aligned_cols=209 Identities=19% Similarity=0.252 Sum_probs=136.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEec--CCCCCCccCCCCCCceEee---cCCCccC-----------CCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER--ENCYASIWKKYSYDRLRLH---LAKQFCQ-----------LPHLP 69 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~--~~~~Gg~w~~~~y~~~~~~---~~~~~~~-----------~~~~~ 69 (325)
..||++|||||.+||++|+..+..|.+|.++|- -.-.|..|.-. +...| +|+.+++ -..+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlG---GTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLG---GTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccC---ceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 468999999999999999999999999999982 22245555532 11222 1222111 01111
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc----EEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533 70 FPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM----WNVKASNLLSPGREIEEYYSGRFLVVA 144 (325)
Q Consensus 70 ~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~----~~v~~~~~~~~~~~~~~~~~ad~vIiA 144 (325)
|.-+- ..-+.+..+.+-.++.....+.--++.++. ..+.+...-+. .++...+..+ +.+. ++|+.+++|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIa 168 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIA 168 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEE
Confidence 11111 234566778888888777766544333332 23333322222 3344443322 2366 999999999
Q ss_pred ccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 145 SGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 145 tG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
|| .+|+.|++||..++ .+.|.+... ..+.+.+.+|||+|+.|.|+|..|+..|..||+..|+- +|.
T Consensus 169 tG--~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~Lr 234 (503)
T KOG4716|consen 169 TG--LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLR 234 (503)
T ss_pred ec--CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecc
Confidence 99 88999999998765 355655554 44556678899999999999999999999999999984 666
Q ss_pred hhhHHHHHHHHhh
Q 020533 225 REMVYLGVVLFKY 237 (325)
Q Consensus 225 ~~~~~~~~~~~~~ 237 (325)
-++.+++..+...
T Consensus 235 GFDqdmae~v~~~ 247 (503)
T KOG4716|consen 235 GFDQDMAELVAEH 247 (503)
T ss_pred cccHHHHHHHHHH
Confidence 6666555544443
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.67 E-value=8.7e-16 Score=149.59 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=116.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||+|++||++|..|++.|++|+|||+.+.+||.|++. .+.+. ...++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~~---------l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPPFK---------LDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCccc---------CCHHHHH
Confidence 46899999999999999999999999999999999999987643 11111 1134555
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++.+|+.. ++++++.. .+...+ .. ..+|.|++|||.. .+..+.+||.+.
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~---- 418 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR----------DITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA---- 418 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence 5666777788654 77776521 011221 23 4689999999964 334456777543
Q ss_pred CCCCccEEec-----------CCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533 166 ATGTGEVIHS-----------TQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (325)
Q Consensus 166 ~~~~g~~~~~-----------~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~ 228 (325)
.|. ++. ..... .....+|+|+|||+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 419 ---~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~ 494 (639)
T PRK12809 419 ---PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK 494 (639)
T ss_pred ---CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 221 110 00000 123468999999999999999999888885 799999987555665543
No 75
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.66 E-value=2.3e-15 Score=135.22 Aligned_cols=170 Identities=24% Similarity=0.314 Sum_probs=119.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (325)
...++|||+|++|..|+..+++.|+ +++++-+...+- |+..++ ++..... ...+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~L--s~~~~~~--------------~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARL--SKFLLTV--------------GEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhc--ccceeec--------------ccccc
Confidence 4579999999999999999999987 778877665421 222111 1111000 01111
Q ss_pred HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
....++.+.++++. ++++.|+.++... -+|.+.++ +. +.++++++||| +.++.|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~----K~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS----KTLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc----cEEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence 22233456677766 9999999998765 45777765 67 89999999999 68889999998632
Q ss_pred CCCCCccEEecC-CCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533 165 SATGTGEVIHST-QYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (325)
Q Consensus 165 ~~~~~g~~~~~~-~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~ 225 (325)
.+++. +..+. ..-.+++|+|+|+|..|+|++..|...+.+||++.+.+ |.+|+
T Consensus 193 -------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~ 251 (478)
T KOG1336|consen 193 -------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPR 251 (478)
T ss_pred -------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhh
Confidence 22221 11111 11237889999999999999999999999999999999 77776
No 76
>PRK09897 hypothetical protein; Provisional
Probab=99.66 E-value=3.6e-15 Score=140.75 Aligned_cols=190 Identities=15% Similarity=0.197 Sum_probs=118.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCC-Cc-cCCCCC-CceEeecCC--------CccCCCCC------
Q 020533 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYSY-DRLRLHLAK--------QFCQLPHL------ 68 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~G-g~-w~~~~y-~~~~~~~~~--------~~~~~~~~------ 68 (325)
++|+|||||++|+++|.+|.+.+ ++|+|||++..+| |. |....- +-+..+... .+..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998764 5899999988887 43 443211 111112110 11111000
Q ss_pred ---C---CCCCCCCCCCHHHHHHHHHHHHHHc-------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 69 ---P---FPSSYPMFVSRAQFIEHLDHYVSHF-------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 69 ---~---~~~~~~~~~~~~~~~~yl~~~a~~~-------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
. ...+...|+++..+.+|+.+..+.+ +....++.+++|++++..+ +.|.|++.++. ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~- 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS- 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence 0 0001135778877777777654432 3334557788999998765 66888775431 46
Q ss_pred EEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCC--CCCCCCCeEEEECcCCCHHHHHHHHhhcc----
Q 020533 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA---- 209 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~~---- 209 (325)
+.+|.||+|+|+.. |..+ ++...| + ...|.. .....+.+|+|+|.|.|++|++..|...+
T Consensus 153 i~aD~VVLAtGh~~-p~~~--~~~~~y----------i-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~ 218 (534)
T PRK09897 153 ETFDLAVIATGHVW-PDEE--EATRTY----------F-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI 218 (534)
T ss_pred EEcCEEEECCCCCC-CCCC--hhhccc----------c-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence 88999999999632 2211 111111 1 122221 12334689999999999999999987552
Q ss_pred -----------------CeEEEEEecCC
Q 020533 210 -----------------AKTSLVVRSPV 220 (325)
Q Consensus 210 -----------------~~v~~~~r~~~ 220 (325)
.+++++.|++.
T Consensus 219 ~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 219 EDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred ccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 36899999873
No 77
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.64 E-value=3.6e-15 Score=140.70 Aligned_cols=162 Identities=22% Similarity=0.249 Sum_probs=109.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||...+. ++ .+....++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------ip---------~~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------IP---------NMKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------CC---------CccCCHHHHH
Confidence 34799999999999999999999999999999999988764321 11 1111234555
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
+..+.++++++.. ++++.+. .+ +..+. .. ..||.||+|||.. .|..+++||.+.
T Consensus 198 ~~~~~~~~~Gv~~--~~~~~v~-~~---------~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~---- 251 (485)
T TIGR01317 198 RRIDLLSAEGIDF--VTNTEIG-VD---------ISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL---- 251 (485)
T ss_pred HHHHHHHhCCCEE--ECCCEeC-Cc---------cCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC----
Confidence 5556667777654 7777763 10 11111 23 5789999999953 367778888642
Q ss_pred CCCCccEE-----ecC-------CC--CCCCCCCCCeEEEECcCCCHHHHHHHHhhcc-CeEEEEEecCC
Q 020533 166 ATGTGEVI-----HST-------QY--KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPV 220 (325)
Q Consensus 166 ~~~~g~~~-----~~~-------~~--~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~~ 220 (325)
.|... +.. .. .......+|+|+|||+|++|+|+|..+.+.+ .+|+++.+.+.
T Consensus 252 ---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 252 ---KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred ---CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 22111 000 00 0112256899999999999999988888876 47999988773
No 78
>PRK13984 putative oxidoreductase; Provisional
Probab=99.62 E-value=5.6e-15 Score=143.52 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=105.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||+|++|+++|..|.++|++|+|||+.+..||.+... ++. +....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~---------~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPS---------YRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCc---------ccCCHHHHH
Confidence 46789999999999999999999999999999999988865421 111 111234445
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
...+.++++++.. +++++|.. + +..+. .. ..||+||+|||. ..|+.+++||.+..
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~---~-------~~~~~--------~~-~~yD~vilAtGa-~~~r~l~i~G~~~~--- 392 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK---D-------IPLEE--------LR-EKHDAVFLSTGF-TLGRSTRIPGTDHP--- 392 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC---c-------CCHHH--------HH-hcCCEEEEEcCc-CCCccCCCCCcCCc---
Confidence 5555667777554 77777621 0 11111 23 578999999995 23566778886531
Q ss_pred CCCCccEEecCCCCC----------CCCCCCCeEEEECcCCCHHHHHHHHhhccC------eEEEEE
Q 020533 166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVV 216 (325)
Q Consensus 166 ~~~~g~~~~~~~~~~----------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~------~v~~~~ 216 (325)
+ +++..++.. .....+++|+|||+|.+|+|+|..+++.+. +|+++.
T Consensus 393 ----g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 393 ----D-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred ----C-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 2 222211110 012347899999999999999999998753 677764
No 79
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.58 E-value=3.8e-14 Score=130.57 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCCeEEEECCChHHHHHHHHHH-hcCCCeEEEecCCCCCCccCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKY 49 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~-~~g~~v~v~e~~~~~Gg~w~~~ 49 (325)
..++|+||||||+|+++|..|+ +.|++|+|||+.+.+||.+++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 4578999999999999999875 5699999999999999988753
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.58 E-value=1.5e-14 Score=141.90 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=35.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..++|+||||||+||++|+.|++.|++|++||+.+..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 567999999999999999999999999999999876554
No 81
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.58 E-value=1.8e-14 Score=138.74 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=111.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
...+|+|||+||+||++|..|+++|++|+++|+.+.+||.++.. ++.+. ...++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~---------~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAYR---------LPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCcc---------CCHHHHH
Confidence 45789999999999999999999999999999999999876431 11111 1234445
Q ss_pred HHHHHHHHcCCCceeeeCeEE-EEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
...+.+.++++.. .+++.+ ..+..+ . .. ..+|.||+|+|... +..+.++|.+.
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~--------~~-~~~D~Vi~AtG~~~-~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q--------LE-GEFDAVFVAIGAQL-GKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H--------HH-hhCCEEEEeeCCCC-CCcCCCCCCcc---
Confidence 5555667777543 676654 221111 1 12 35799999999632 23345666432
Q ss_pred CCCCCccEEecCCC-----CCCCCCCCCeEEEECcCCCHHHHHHHHhhcc-CeEEEEEecCCeeechhh
Q 020533 165 SATGTGEVIHSTQY-----KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPVHVLSREM 227 (325)
Q Consensus 165 ~~~~~g~~~~~~~~-----~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~~~~~p~~~ 227 (325)
.|.+ +...+ .......+++|+|||+|.+|+|++..+.+.+ .+|++++|.+...+|...
T Consensus 246 ----~gv~-~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~ 309 (564)
T PRK12771 246 ----AGVL-DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHD 309 (564)
T ss_pred ----CCcE-EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCH
Confidence 2322 21111 1113456899999999999999999998888 679999998754455443
No 82
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=2.1e-13 Score=123.43 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=128.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCC-ccCCCCCCceEeecCCCccCC--CCCC------------
Q 020533 8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQL--PHLP------------ 69 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g---~~v~v~e~~~~~Gg-~w~~~~y~~~~~~~~~~~~~~--~~~~------------ 69 (325)
++|+|||+|++|+++|.+|.+.- ..+.|||+.+.+|+ +-+...-+..++|++..-++. ++.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999862 24999999998875 333333333444544332221 2211
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHcCCCc----eeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533 70 -------FPSSYPMFVSRAQFIEHLDHYVSHFNIGP----SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (325)
Q Consensus 70 -------~~~~~~~~~~~~~~~~yl~~~a~~~~l~~----~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (325)
...+-+.|+++..+.+|+.+....+--.. .....++.+++...++.+.|.+...++ .. ..|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence 12234578899999999888765441111 124556777777765557788887775 45 689
Q ss_pred CeEEEcccCCCCCCCCCCCCccccccCCCCCc-cEEecCCCCCC---CCCCCCeEEEECcCCCHHHHHHHHhhccC--eE
Q 020533 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTG-EVIHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHAA--KT 212 (325)
Q Consensus 139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g-~~~~~~~~~~~---~~~~~~~v~VvG~G~s~~e~a~~l~~~~~--~v 212 (325)
|.+|+|||+. .|..+. -...+ .+ .-+++..|... ....+.+|+|+|+|.+.+|....|...|. ++
T Consensus 154 d~~Vlatgh~-~~~~~~--~~~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I 224 (474)
T COG4529 154 DIIVLATGHS-APPADP--AARDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI 224 (474)
T ss_pred eEEEEeccCC-CCCcch--hhhcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence 9999999963 332222 11222 11 11333333321 22345679999999999999999999874 69
Q ss_pred EEEEecCCeeech
Q 020533 213 SLVVRSPVHVLSR 225 (325)
Q Consensus 213 ~~~~r~~~~~~p~ 225 (325)
|++.|++ ++|+
T Consensus 225 t~iSRrG--l~~~ 235 (474)
T COG4529 225 TAISRRG--LVPR 235 (474)
T ss_pred EEEeccc--cccC
Confidence 9999998 4444
No 83
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.57 E-value=5.7e-14 Score=131.13 Aligned_cols=158 Identities=18% Similarity=0.307 Sum_probs=100.5
Q ss_pred HHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCC-CCCHHHHHHH-HHHHHHHcCC
Q 020533 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH-LDHYVSHFNI 96 (325)
Q Consensus 21 ~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y-l~~~a~~~~l 96 (325)
++|.+|++. ..+|+|||+++..+ |.. + .+ +..... .....++..| ..++++++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~-------~~~--~-------~l-----~~~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS-------FAN--C-------GL-----PYVIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee-------EEc--C-------CC-----CeEeccccCCHHHcccCCHHHHHHhcCC
Confidence 368888876 46899999998542 100 0 00 000001 1112233333 2345577776
Q ss_pred CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE--eCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEe
Q 020533 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH 174 (325)
Q Consensus 97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~ 174 (325)
.. +++++|++++..+ + +|.+.+..++ .. +. ||+||+||| +.|..|++||++.- .+++
T Consensus 60 ~~--~~~~~V~~id~~~--~--~v~~~~~~~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~~--------~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER--Q--TVVVRNNKTN----ET-YEESYDYLILSPG--ASPIVPNIEGINLD--------IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC--C--EEEEEECCCC----CE-EecCCCEEEECCC--CCCCCCCCCCcCCC--------CEEE
Confidence 54 7899999997644 3 4544433221 35 66 999999999 68888889887521 1232
Q ss_pred cCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 175 ~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.....+. ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 2221110 124578999999999999999999999999999999884
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.51 E-value=9.5e-14 Score=128.47 Aligned_cols=158 Identities=23% Similarity=0.328 Sum_probs=112.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+||||||+||++|..|+++|+.|++||+.+..||.-.+ ..+ .|....++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y---------------GIP---------~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY---------------GIP---------DFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe---------------cCc---------hhhccchHHHH
Confidence 478999999999999999999999999999999999987443 222 33334467788
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~ 166 (325)
..++.++.|+. ++.++++-. .++.+.. . -.+|.|++|+|. ..|+..++||.+.
T Consensus 179 ~i~~l~~~Gv~--~~~~~~vG~----------~it~~~L-------~--~e~Dav~l~~G~-~~~~~l~i~g~d~----- 231 (457)
T COG0493 179 RLELLERSGVE--FKLNVRVGR----------DITLEEL-------L--KEYDAVFLATGA-GKPRPLDIPGEDA----- 231 (457)
T ss_pred HHHHHHHcCeE--EEEcceECC----------cCCHHHH-------H--HhhCEEEEeccc-cCCCCCCCCCcCC-----
Confidence 88888888844 477777621 1333322 1 234999999996 4666667888752
Q ss_pred CCCccEEecCC------------C--CCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEec
Q 020533 167 TGTGEVIHSTQ------------Y--KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (325)
Q Consensus 167 ~~~g~~~~~~~------------~--~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~ 218 (325)
.| +....+ + .....-.+|+|+|||+|.|++|++......|. +|+.++|.
T Consensus 232 --~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~ 295 (457)
T COG0493 232 --KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRE 295 (457)
T ss_pred --Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccc
Confidence 12 111111 1 11222346999999999999999999999987 68888643
No 85
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.47 E-value=7.4e-13 Score=124.71 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=126.2
Q ss_pred CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
+.+++|||.|.+|..+...+++ .-+++++|-..+++. |+...++. .+ +.-.+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------vl------~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------VL------AGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------cc------CCCccHHHH
Confidence 3579999999999999999998 356899998887643 54443321 00 011123455
Q ss_pred HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (325)
Q Consensus 84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~ 163 (325)
.-.-.++++++++. ++.+.+|+.++++. -+|+++.+ .. +.+|.+|+||| |.|++|++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~--L~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGIT--LYTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcE--EEcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC-
Confidence 55556778888855 49999999998765 55777765 66 89999999999 89999999998764
Q ss_pred cCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (325)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~ 227 (325)
+ ++....+.+. .....++-+|||+|.-|+|+|..|...|-++++++-++ ++|-+..
T Consensus 125 ------~-v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQL 185 (793)
T COG1251 125 ------G-VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQL 185 (793)
T ss_pred ------C-eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhh
Confidence 2 3332322221 11234567999999999999999999999999999888 4544443
No 86
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.47 E-value=1.8e-13 Score=121.02 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=94.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC--------ccCC-C--CCCceEeecC---CCc----cCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-Y--SYDRLRLHLA---KQF----CQLPHL 68 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg--------~w~~-~--~y~~~~~~~~---~~~----~~~~~~ 68 (325)
.+||+||||||+||.||..+++.|.+|+|||+++.+|- -++. | .++....+.| ..+ ..|...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 57999999999999999999999999999999997662 2221 1 1112222222 111 111110
Q ss_pred CCC-------------CCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533 69 PFP-------------SSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (325)
Q Consensus 69 ~~~-------------~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (325)
.+. +.-+.|| ....+.+-|...+++.++.. +.+++|.+++.++ ..+.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 000 0112333 56889999999999998665 9999999999876 6788888875
Q ss_pred EEEEEeCeEEEcccCCCCCCC
Q 020533 133 EEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 133 ~~~~~ad~vIiAtG~~~~p~~ 153 (325)
.+ ++||.+|+|||..|.|.+
T Consensus 152 ~~-i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 152 ET-VKCDSLILATGGKSWPKL 171 (408)
T ss_pred CE-EEccEEEEecCCcCCCCC
Confidence 47 999999999998777743
No 87
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.47 E-value=1.1e-12 Score=104.96 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=92.2
Q ss_pred EEECCChHHHHHHHHHHhc-----CCCeEEEecCCCC-CCccCCCCCCceEeecCCCccCC-CCCC---C----------
Q 020533 11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQL-PHLP---F---------- 70 (325)
Q Consensus 11 ~IIGaG~~Gl~~a~~L~~~-----g~~v~v~e~~~~~-Gg~w~~~~y~~~~~~~~~~~~~~-~~~~---~---------- 70 (325)
+|||+|++|++++.+|.++ ..+|+|||+++.. |+.|.....+...+|++...++. +..+ +
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999987 4589999997764 46888766666777776554443 2211 0
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHc------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533 71 ---PSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (325)
Q Consensus 71 ---~~~~~~~~~~~~~~~yl~~~a~~~------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (325)
......|+++..+.+||.+..+.. ++.. .+...+|++++..+ +.|.|.+.++ .. +.||.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v-~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITV-RHVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEE-EEEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence 112247899999999999887764 2222 13456888988876 6688888775 56 899999
Q ss_pred EEcccC
Q 020533 142 VVASGE 147 (325)
Q Consensus 142 IiAtG~ 147 (325)
|+|||+
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999995
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.44 E-value=7.3e-13 Score=115.61 Aligned_cols=165 Identities=22% Similarity=0.215 Sum_probs=107.4
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHH
Q 020533 4 QAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA 81 (325)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (325)
+....+|+|||+||||+.+|..|.++ +++|.|+|+.+.+.|..++..- |.++.-.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvK 73 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVK 73 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchh
Confidence 33456999999999999999999985 6899999999999887664311 1223333
Q ss_pred HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (325)
Q Consensus 82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~ 161 (325)
.+..-+.+.+++..+.. ..|.+| .. .+.+.. -+ -.+|.||+|.|+ ..++..+|||.+.
T Consensus 74 nvintFt~~aE~~rfsf--~gNv~v---G~-------dvsl~e--------L~-~~ydavvLaYGa-~~dR~L~IPGe~l 131 (468)
T KOG1800|consen 74 NVINTFTKTAEHERFSF--FGNVKV---GR-------DVSLKE--------LT-DNYDAVVLAYGA-DGDRRLDIPGEEL 131 (468)
T ss_pred hHHHHHHHHhhccceEE--Eeccee---cc-------cccHHH--------Hh-hcccEEEEEecC-CCCcccCCCCccc
Confidence 34455566666643322 333333 00 123332 23 467899999997 4566778999862
Q ss_pred cccCCCCCccEEecCC---C----C----CCCCCCCCeEEEECcCCCHHHHHHHHhhc----------------------
Q 020533 162 FCSSATGTGEVIHSTQ---Y----K----NGKPYGGKNVLVVGSGNSGMEIALDLANH---------------------- 208 (325)
Q Consensus 162 ~~~~~~~~g~~~~~~~---~----~----~~~~~~~~~v~VvG~G~s~~e~a~~l~~~---------------------- 208 (325)
.+ ++-+.. | + ...++.+.+|+|||.|+.|+|+|..|...
T Consensus 132 -------~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~ 203 (468)
T KOG1800|consen 132 -------SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN 203 (468)
T ss_pred -------cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence 22 111111 1 0 13456789999999999999999987532
Q ss_pred cCeEEEEEecCCe
Q 020533 209 AAKTSLVVRSPVH 221 (325)
Q Consensus 209 ~~~v~~~~r~~~~ 221 (325)
-.+|+++.|++..
T Consensus 204 VkdV~lvgRRgp~ 216 (468)
T KOG1800|consen 204 VKDVKLVGRRGPL 216 (468)
T ss_pred cceEEEEeccCcc
Confidence 1368888888743
No 89
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.41 E-value=3.7e-12 Score=112.96 Aligned_cols=203 Identities=18% Similarity=0.139 Sum_probs=126.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (325)
.++++|+|+|+|-+|.++++.|...-++|+|+..++.+-=+|. .|...-.-..-..+.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIv 110 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIV 110 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhh
Confidence 3568999999999999999999999999999998875322211 111111222334566
Q ss_pred HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (325)
Q Consensus 85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~ 164 (325)
+-+...+.+-.-..+ .+..+...++.+. +...+.....++.. .... +.+|+||+|+| ..++.+.+||..+..
T Consensus 111 EPIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~~-~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~- 182 (491)
T KOG2495|consen 111 EPIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSSD-KEFV-IGYDYLVIAVG--AEPNTFGIPGVEENA- 182 (491)
T ss_pred hhHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCCc-ceee-ecccEEEEecc--CCCCCCCCCchhhch-
Confidence 666666665432221 4555566665543 44333332222211 3367 89999999999 778888999876530
Q ss_pred CCCCCccEEecCCC-------------C---CCCCCCCCeEEEECcCCCHHHHHHHHhhc--------------cCeEEE
Q 020533 165 SATGTGEVIHSTQY-------------K---NGKPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSL 214 (325)
Q Consensus 165 ~~~~~g~~~~~~~~-------------~---~~~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------~~~v~~ 214 (325)
..-..+-++++. . +++..+--+++|||||++|+|+|.+|+.. -.+||+
T Consensus 183 --~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtL 260 (491)
T KOG2495|consen 183 --HFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTL 260 (491)
T ss_pred --hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEe
Confidence 001112221111 1 11112234689999999999999999853 137898
Q ss_pred EEecCCeeechhhHHHHHHHHhhCCH
Q 020533 215 VVRSPVHVLSREMVYLGVVLFKYVPF 240 (325)
Q Consensus 215 ~~r~~~~~~p~~~~~~~~~~~~~~p~ 240 (325)
+.-.| ++|+..+..+..+..+.+..
T Consensus 261 iEA~d-~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 261 IEAAD-HILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred eccch-hHHHHHHHHHHHHHHHHhhh
Confidence 98888 78888877776665555443
No 90
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.39 E-value=1.7e-12 Score=119.22 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=74.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------ccCCC------CCCceEee---cCCCcc----CCC--
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKKY------SYDRLRLH---LAKQFC----QLP-- 66 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------~w~~~------~y~~~~~~---~~~~~~----~~~-- 66 (325)
|||+|||||+|||.||..|++.|.+|+|+||++.+|- ..+.| .+...... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6999999999999999999999999999999998762 22211 00111111 000000 000
Q ss_pred ---------CCCC--CCCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533 67 ---------HLPF--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (325)
Q Consensus 67 ---------~~~~--~~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (325)
..+. .++.+.|| ...++.+.|...+++.++.. +++++|.+++.++ ++.|.|.+++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 0000 00111222 46788889999999988665 9999999998865 34488888432
Q ss_pred EEEEEeCeEEEcccCCCCCC
Q 020533 133 EEYYSGRFLVVASGETTNPF 152 (325)
Q Consensus 133 ~~~~~ad~vIiAtG~~~~p~ 152 (325)
.. +.||.||+|||..+.|.
T Consensus 151 ~~-~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 GE-YEADAVILATGGKSYPK 169 (409)
T ss_dssp EE-EEESEEEE----SSSGG
T ss_pred cc-ccCCEEEEecCCCCccc
Confidence 67 99999999999776554
No 91
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.37 E-value=6e-12 Score=111.37 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=86.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC----------CCc---------eEeecC-CCccCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS----------YDR---------LRLHLA-KQFCQLPH 67 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~----------y~~---------~~~~~~-~~~~~~~~ 67 (325)
+||+|||||++|+++|..|++.|++|+|+|+.+..+..|.... ... ...... .... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV---E 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE---E
Confidence 5899999999999999999999999999999987654332210 000 000000 0000 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
.+.+.......++.++.+.|.+.+.+.++.. +++++|+++..++ +.+.+.+... ..+ +++|+||+|+|.
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~------~~~-~~a~~vv~a~G~ 146 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG------EGT-VTAKIVIGADGS 146 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc------cEE-EEeCEEEECCCc
Confidence 1111111123578899999999998887554 8999999998765 4555554432 157 899999999997
Q ss_pred CC
Q 020533 148 TT 149 (325)
Q Consensus 148 ~~ 149 (325)
++
T Consensus 147 ~s 148 (295)
T TIGR02032 147 RS 148 (295)
T ss_pred ch
Confidence 65
No 92
>PRK06847 hypothetical protein; Provisional
Probab=99.35 E-value=5e-11 Score=109.42 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=87.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC----ccCC--------------------CCCCceEeecC--C
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IWKK--------------------YSYDRLRLHLA--K 60 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg----~w~~--------------------~~y~~~~~~~~--~ 60 (325)
..||+|||||++||++|..|.+.|++|+|+|+++.... .... .......+..+ .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46899999999999999999999999999999874321 0000 00111111111 0
Q ss_pred CccCCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533 61 QFCQLPHLPF-PSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (325)
Q Consensus 61 ~~~~~~~~~~-~~~~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (325)
....++.... ...+ .....+.++.++|.+.+.+.++. ++++++|++++.++ +.+.+.+.++ .+ +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD--DGVTVTFSDG-------TT-GR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC--CEEEEEEcCC-------CE-EE
Confidence 0111111000 0011 12456789999999999887754 49999999998754 5677777654 56 89
Q ss_pred eCeEEEcccCCCCCC
Q 020533 138 GRFLVVASGETTNPF 152 (325)
Q Consensus 138 ad~vIiAtG~~~~p~ 152 (325)
+|.||.|+|.++..+
T Consensus 152 ad~vI~AdG~~s~~r 166 (375)
T PRK06847 152 YDLVVGADGLYSKVR 166 (375)
T ss_pred cCEEEECcCCCcchh
Confidence 999999999876543
No 93
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.34 E-value=2.2e-11 Score=112.27 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=86.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CC---CCCccCC--------------CCCCceEeecCCCccCCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC---YASIWKK--------------YSYDRLRLHLAKQFCQLPHLP 69 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~---~Gg~w~~--------------~~y~~~~~~~~~~~~~~~~~~ 69 (325)
|||+||||||+|+++|+.|++.|++|+|+|++ +. .|+.... +.+.+..+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999997 32 1221110 112223332222100000111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC---CCCceeEEEEEeCeEEEccc
Q 020533 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPGREIEEYYSGRFLVVASG 146 (325)
Q Consensus 70 ~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~~~ad~vIiAtG 146 (325)
.+..+.....+..+.++|.+.+.+.|... +. ++|+++..++ +.+.|++.++. ++ +..+ +++|.||.|+|
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~--~~~~-i~a~~VI~AdG 152 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGG--EKGS-VEADVVIGADG 152 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCC--cceE-EEeCEEEECCC
Confidence 11111123788999999999999888654 44 4688887654 67888776421 11 2257 89999999999
Q ss_pred CCCC
Q 020533 147 ETTN 150 (325)
Q Consensus 147 ~~~~ 150 (325)
.+|.
T Consensus 153 ~~S~ 156 (388)
T TIGR02023 153 ANSP 156 (388)
T ss_pred CCcH
Confidence 7663
No 94
>PRK08244 hypothetical protein; Provisional
Probab=99.33 E-value=4.1e-11 Score=114.00 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-------------------ccCC-----CCCCceEeecCCCc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQF 62 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-------------------~w~~-----~~y~~~~~~~~~~~ 62 (325)
++||+||||||+||++|..|++.|++|+|+||.+.... .|.. ..+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 37999999999999999999999999999999874321 1100 00111111100000
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533 63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (325)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (325)
..+...+.+..+....++..+.+.|.+.+++.++. +++++++++++.++ +.+++++.+.++. .+ +++|+||
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~~~g~----~~-i~a~~vV 152 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG--DGVEVVVRGPDGL----RT-LTSSYVV 152 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC--CeEEEEEEeCCcc----EE-EEeCEEE
Confidence 11111111111112356788999999988887755 59999999998765 4566766543221 57 8999999
Q ss_pred EcccCCC
Q 020533 143 VASGETT 149 (325)
Q Consensus 143 iAtG~~~ 149 (325)
.|+|.+|
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999876
No 95
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.33 E-value=4e-12 Score=123.41 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=105.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..++|+|||+||+||++|.+|.+.|+.|+|+||.+++||...+. +| ..-....+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ip---------nmkldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IP---------NMKLDKFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CC---------ccchhHHHHH
Confidence 35799999999999999999999999999999999999975432 21 1122234556
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~ 165 (325)
.--+...+-|+.. ..|+++-. .+..+. -. -..|.+|+|+|. ..|+..++||.+.- .
T Consensus 1840 rrv~ll~~egi~f--~tn~eigk----------~vs~d~--------l~-~~~daiv~a~gs-t~prdlpv~grd~k--g 1895 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRF--VTNTEIGK----------HVSLDE--------LK-KENDAIVLATGS-TTPRDLPVPGRDLK--G 1895 (2142)
T ss_pred HHHHHHHhhCceE--Eeeccccc----------cccHHH--------Hh-hccCeEEEEeCC-CCCcCCCCCCcccc--c
Confidence 6666677777654 55555411 022221 11 245889999996 57777788887641 0
Q ss_pred CCCCccEEecCC--C------CCCCCCCCCeEEEECcCCCHHHHHHHHhhccCe
Q 020533 166 ATGTGEVIHSTQ--Y------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (325)
Q Consensus 166 ~~~~g~~~~~~~--~------~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~ 211 (325)
+...-+.+|... . -+....+||+|+|||+|.+|-|+...-.++|.+
T Consensus 1896 v~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1896 VHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred cHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 000111222110 0 111345799999999999999999999999865
No 96
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.33 E-value=5.1e-11 Score=114.46 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=90.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC------------------------CCCceEeecC--
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYDRLRLHLA-- 59 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~------------------------~y~~~~~~~~-- 59 (325)
..+||+||||||+|+++|..|++.|++|+|+||.+.+....+.. ..........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 46899999999999999999999999999999997554221110 0111222111
Q ss_pred CCccCCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 60 KQFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 60 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.....+.. ...+..++ ....+.++.++|.+.+.++ ++ .++++++|++++.++ +.+++++++.++ +..+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~- 160 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD--DGVTVTLTDADG---QRET- 160 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC--CeEEEEEEcCCC---CEEE-
Confidence 11111111 00001111 2346778888998888775 54 459999999998865 567787764322 2367
Q ss_pred EEeCeEEEcccCCCCC
Q 020533 136 YSGRFLVVASGETTNP 151 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~p 151 (325)
+++|+||.|+|.+|.-
T Consensus 161 i~ad~vVgADG~~S~v 176 (538)
T PRK06183 161 VRARYVVGCDGANSFV 176 (538)
T ss_pred EEEEEEEecCCCchhH
Confidence 8999999999987743
No 97
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.32 E-value=3.8e-11 Score=110.81 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCc----eEe-----ecCCCc--cCCCCCCCCCCCC-C
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR----LRL-----HLAKQF--CQLPHLPFPSSYP-M 76 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~----~~~-----~~~~~~--~~~~~~~~~~~~~-~ 76 (325)
||+|||||++|+++|..|++.|++|+|+|+++.+|+.+....+.. +.+ +.-... +.++........+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999987776332221111 000 000000 0011110000111 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
...+.++.+++.+.+.+.++. .+.++|..+..+. .+.|.|++.++ .+ ++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence 257789999999998888753 4567888887652 46688877653 46 89999999999765
No 98
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.31 E-value=1.9e-11 Score=105.81 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-ccCCC-CCCceEeecC-CCc---cCCCCCCCCCCCCCCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQF---CQLPHLPFPSSYPMFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-~w~~~-~y~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 80 (325)
.+||+||||||+|+++|..|++.|++|+|+|++..+|| .|... .++...+..+ ..+ ..++....... .....+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g-~~~vd~ 103 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG-LYVADS 103 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCc-ceeccH
Confidence 58999999999999999999999999999999988765 45322 1221111100 000 01111111111 112466
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee------cCCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN------LLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~------~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.++...|.+.+.+.+... +++++|.++..+++...+-+.... +.+. +... +.|+.||+|||+.+
T Consensus 104 ~~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~--~~~~-i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV--DPLT-IEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCC--CcEE-EEcCEEEEEeCCCc
Confidence 788888998898888654 899999998765422222232221 1110 2257 99999999999754
No 99
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.30 E-value=1.3e-11 Score=112.08 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=85.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC----------------------CC--CC--ceEeecC--
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK----------------------YS--YD--RLRLHLA-- 59 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~----------------------~~--y~--~~~~~~~-- 59 (325)
+||+||||||+|+++|..|+++|++|+|||+++........ .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999998754321110 00 00 0111111
Q ss_pred ---------CCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (325)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (325)
.....+. ............+.++.+.|.+.+++.+ ..+++++++++++.+. +..++.+.....+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~g--v~i~~~~~v~~~~~d~--~~~~~~~~~~~~g-- 154 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERG--VDIRFGTRVVSIEQDD--DGVTVVVRDGEDG-- 154 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHT--EEEEESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhh--hhheeeeecccccccc--cccccccccccCC--
Confidence 0000010 0000111123467899999999999988 4559999999998776 5566666555333
Q ss_pred eeEEEEEeCeEEEcccCCCC
Q 020533 131 EIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 131 ~~~~~~~ad~vIiAtG~~~~ 150 (325)
+..+ +++|.||.|.|.+|.
T Consensus 155 ~~~~-i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 155 EEET-IEADLVVGADGAHSK 173 (356)
T ss_dssp EEEE-EEESEEEE-SGTT-H
T ss_pred ceeE-EEEeeeecccCcccc
Confidence 3357 999999999998763
No 100
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.30 E-value=6.3e-11 Score=110.50 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=83.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc------cCCCC----CCceE---------------eecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKKYS----YDRLR---------------LHLAKQ 61 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~------w~~~~----y~~~~---------------~~~~~~ 61 (325)
.+||+||||||+|+++|..|+++|++|+|+||.+.+|.. ..... ++... ......
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 589999999999999999999999999999998765421 11100 11000 000000
Q ss_pred cc--CCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533 62 FC--QLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (325)
Q Consensus 62 ~~--~~~~~~--~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (325)
.. .+.... .+........+.++.++|.+.+++.|+.. +.+++|+++..++ +.+.+...++ .+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g-------~~-i~ 152 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG-------DV-IE 152 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC-------cE-EE
Confidence 00 010000 00011122467889999999999888654 8999999987654 4443333221 56 89
Q ss_pred eCeEEEcccCCC
Q 020533 138 GRFLVVASGETT 149 (325)
Q Consensus 138 ad~vIiAtG~~~ 149 (325)
|+.||+|+|..+
T Consensus 153 A~~VI~A~G~~s 164 (428)
T PRK10157 153 AKTVILADGVNS 164 (428)
T ss_pred CCEEEEEeCCCH
Confidence 999999999754
No 101
>PLN02463 lycopene beta cyclase
Probab=99.29 E-value=5.5e-11 Score=110.78 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=84.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----CCccCC------------CCCCceEeecCCCccCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASIWKK------------YSYDRLRLHLAKQFCQLPHL 68 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-----Gg~w~~------------~~y~~~~~~~~~~~~~~~~~ 68 (325)
..+||+||||||+|+++|..|++.|++|+|+|+++.. .|.|.. ..++...+..+.... .
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~----~ 102 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK----K 102 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC----c
Confidence 3579999999999999999999999999999997632 233321 011111111100000 0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
..... -....+.++.+++.+.+...++. ...++|++++..+ +.+.|++.++ .+ +.||.||.|+|..
T Consensus 103 ~~~~~-y~~V~R~~L~~~Ll~~~~~~GV~---~~~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~ 168 (447)
T PLN02463 103 DLDRP-YGRVNRKKLKSKMLERCIANGVQ---FHQAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFS 168 (447)
T ss_pred cccCc-ceeEEHHHHHHHHHHHHhhcCCE---EEeeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCC
Confidence 00001 12357889999999988887764 3357899988764 5678887764 56 8999999999976
Q ss_pred CC
Q 020533 149 TN 150 (325)
Q Consensus 149 ~~ 150 (325)
+.
T Consensus 169 s~ 170 (447)
T PLN02463 169 RC 170 (447)
T ss_pred cC
Confidence 53
No 102
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.29 E-value=3.8e-11 Score=103.59 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=87.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-CccCCCC-CCceEeecC-CCccCCCCCCCCCCCC--CCCCH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSR 80 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-g~w~~~~-y~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 80 (325)
..+||+||||||+||++|+.|++.|++|+|+||+..+| ++|.... ++.+.+..+ ..+..-...++..... ....+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 35899999999999999999999999999999999886 4665431 222211111 0011101111111111 12356
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCC-CcEEEEEeec----CCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNL----LSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~----~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.++.+.|.+.+.+.+.. ++++++|.++..+++. ...-|.+... .+...++.. +.++.||.|||+.+
T Consensus 100 ~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVdATG~~a 170 (254)
T TIGR00292 100 AEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEEeecCCc
Confidence 78889999999888855 4899999998876532 1112222211 000002267 99999999999643
No 103
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.29 E-value=1.2e-10 Score=112.07 Aligned_cols=140 Identities=17% Similarity=0.248 Sum_probs=89.2
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC--------------CCC----------CceE-ee
Q 020533 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSY----------DRLR-LH 57 (325)
Q Consensus 3 ~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~--------------~~y----------~~~~-~~ 57 (325)
..+..+||+||||||+||++|..|.+.|++|+|+|+++.+....+. ... .... ..
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 3445689999999999999999999999999999999855321110 000 0000 00
Q ss_pred cCCCccCCCCCCCC-CCCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533 58 LAKQFCQLPHLPFP-SSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (325)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (325)
.......+...+.. ..++ ...++..+.++|.+.+.+++. ..++++++|++++.++ +.++++++..++. .+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~----~~ 171 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD--DGVTLTVETPDGP----YT 171 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC--CEEEEEEECCCCc----EE
Confidence 11111111111100 1111 124677888999988877632 4569999999998765 5677766543221 47
Q ss_pred EEEeCeEEEcccCCCC
Q 020533 135 YYSGRFLVVASGETTN 150 (325)
Q Consensus 135 ~~~ad~vIiAtG~~~~ 150 (325)
+.+|+||.|+|.+|.
T Consensus 172 -i~ad~vVgADG~~S~ 186 (547)
T PRK08132 172 -LEADWVIACDGARSP 186 (547)
T ss_pred -EEeCEEEECCCCCcH
Confidence 899999999997764
No 104
>PRK06184 hypothetical protein; Provisional
Probab=99.28 E-value=1.2e-10 Score=111.08 Aligned_cols=134 Identities=18% Similarity=0.274 Sum_probs=86.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------ccCC------------------CCCCceEeecC-CC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ 61 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------~w~~------------------~~y~~~~~~~~-~~ 61 (325)
.+||+||||||+||++|..|++.|++|+|+||.+.+.. .+.. ..++....... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999875421 1100 01111111111 00
Q ss_pred ccCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533 62 FCQLPHLP-------FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (325)
Q Consensus 62 ~~~~~~~~-------~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (325)
........ .+.......++..+.+.|.+.+.+.++ .+++++++++++.++ +.+++++....++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~ 154 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA--DGVTARVAGPAGE----ET 154 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence 00000000 000111234577788888888888775 459999999998765 5577776443222 67
Q ss_pred EEEeCeEEEcccCCC
Q 020533 135 YYSGRFLVVASGETT 149 (325)
Q Consensus 135 ~~~ad~vIiAtG~~~ 149 (325)
+++|+||.|+|.+|
T Consensus 155 -i~a~~vVgADG~~S 168 (502)
T PRK06184 155 -VRARYLVGADGGRS 168 (502)
T ss_pred -EEeCEEEECCCCch
Confidence 89999999999876
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.27 E-value=1e-10 Score=110.68 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=85.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-------CccCC--------CCCCceE-----ee---cCCCcc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKK--------YSYDRLR-----LH---LAKQFC 63 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-------g~w~~--------~~y~~~~-----~~---~~~~~~ 63 (325)
.+||+||||||+|+++|..|++.|++|+|+|+.+... +.+.. ..++.+. .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999986421 11110 0000000 00 000000
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533 64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (325)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi 143 (325)
.+...+....+.....+..+.+.|.+.+++.++. ++++++|++++.++ +.+.+++.++ .+ +++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence 1111111111123346788889999988888754 59999999998765 5677766442 46 89999999
Q ss_pred cccCCCC
Q 020533 144 ASGETTN 150 (325)
Q Consensus 144 AtG~~~~ 150 (325)
|+|.+|.
T Consensus 151 ADG~~S~ 157 (488)
T PRK06834 151 CDGGRSL 157 (488)
T ss_pred ecCCCCC
Confidence 9998763
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.27 E-value=6.4e-11 Score=109.46 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=87.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC--CCCC----ceE--------eecCCCccCCCCC----
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSYD----RLR--------LHLAKQFCQLPHL---- 68 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~--~~y~----~~~--------~~~~~~~~~~~~~---- 68 (325)
++||+||||||||++||+.|++.|++|+++|+.+.+|.--.. ..++ .+. ..+......++..
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999999877742111 0000 000 0000000001100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
..+........+..+.++|.+.|++.|... +.++++..+..++ +.+.+....++ .+ +++++||.|+|..
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~~ 151 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGVN 151 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCcc
Confidence 000010122467889999999999999776 9999999998875 44444444421 57 8999999999964
Q ss_pred C
Q 020533 149 T 149 (325)
Q Consensus 149 ~ 149 (325)
+
T Consensus 152 s 152 (396)
T COG0644 152 S 152 (396)
T ss_pred h
Confidence 3
No 107
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.26 E-value=1.3e-10 Score=108.27 Aligned_cols=137 Identities=18% Similarity=0.281 Sum_probs=83.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-----C----------------ccCC---C--CCCceEeecC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----S----------------IWKK---Y--SYDRLRLHLA 59 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-----g----------------~w~~---~--~y~~~~~~~~ 59 (325)
..+||+|||||++|+++|..|++.|++|+|+|+.+... . .|.. . ....+.+...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 46899999999999999999999999999999987542 1 1110 0 0111111100
Q ss_pred C--CccCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533 60 K--QFCQLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (325)
Q Consensus 60 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (325)
. ....+......... .....+..+.+.|.+.+...+ ...+++++++++++.++ +.+.|++.+.++ ..+ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i 168 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCP-NITWLCPAEVVSVEYQQ--DAATVTLEIEGK----QQT-L 168 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCC-CcEEEcCCeeEEEEecC--CeeEEEEccCCc----ceE-E
Confidence 0 01111111111110 111233467777777776652 13458899999997765 567787764322 157 8
Q ss_pred EeCeEEEcccCCCC
Q 020533 137 SGRFLVVASGETTN 150 (325)
Q Consensus 137 ~ad~vIiAtG~~~~ 150 (325)
+||.||.|+|.+|.
T Consensus 169 ~adlvIgADG~~S~ 182 (415)
T PRK07364 169 QSKLVVAADGARSP 182 (415)
T ss_pred eeeEEEEeCCCCch
Confidence 99999999998764
No 108
>PRK08013 oxidoreductase; Provisional
Probab=99.26 E-value=7.7e-11 Score=109.16 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-------------------------CccCCC------CCCceE
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------------------------SIWKKY------SYDRLR 55 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-------------------------g~w~~~------~y~~~~ 55 (325)
.+||+||||||+|+++|..|++.|++|+|+|+.+... |.|..- .+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 4799999999999999999999999999999987522 111110 111122
Q ss_pred eecCCCcc--CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533 56 LHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (325)
Q Consensus 56 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (325)
+..+.... .+......... .....+..+.+.|.+.+.... ...++++++|++++.++ +.+.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~i~~~~~v~~i~~~~--~~v~v~~~~g------- 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSS-DITLLAPAELQQVAWGE--NEAFLTLKDG------- 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCC-CcEEEcCCeeEEEEecC--CeEEEEEcCC-------
Confidence 21111000 01100000000 113567888888888887752 13459999999998765 4567776553
Q ss_pred EEEEEeCeEEEcccCCCC
Q 020533 133 EEYYSGRFLVVASGETTN 150 (325)
Q Consensus 133 ~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +++|.||.|+|.+|.
T Consensus 153 ~~-i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 SM-LTARLVVGADGANSW 169 (400)
T ss_pred CE-EEeeEEEEeCCCCcH
Confidence 56 899999999998764
No 109
>PRK06126 hypothetical protein; Provisional
Probab=99.26 E-value=2.1e-10 Score=110.51 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=88.5
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-----C-----------------CCC------c
Q 020533 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-----Y-----------------SYD------R 53 (325)
Q Consensus 2 ~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-----~-----------------~y~------~ 53 (325)
...+..++|+||||||+||++|..|+++|++|+|+|+.+.....-+. + .++ .
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence 33455689999999999999999999999999999998743211000 0 000 0
Q ss_pred eEee--cCCCccCCCCCC------C--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCC
Q 020533 54 LRLH--LAKQFCQLPHLP------F--------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEAT 115 (325)
Q Consensus 54 ~~~~--~~~~~~~~~~~~------~--------~~-~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~ 115 (325)
.... .......+.... . .. ......++..+.+.|.+.+.+. ++ .++++++|++++.++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~-- 157 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDA-- 157 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECC--
Confidence 0000 000010010000 0 00 0012356777888888888765 44 459999999998765
Q ss_pred CcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 116 NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 116 ~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+.+++++.+..++ +..+ +.+|+||.|+|.+|.
T Consensus 158 ~~v~v~~~~~~~g--~~~~-i~ad~vVgADG~~S~ 189 (545)
T PRK06126 158 DGVTATVEDLDGG--ESLT-IRADYLVGCDGARSA 189 (545)
T ss_pred CeEEEEEEECCCC--cEEE-EEEEEEEecCCcchH
Confidence 5566776653332 3357 899999999998763
No 110
>PRK07190 hypothetical protein; Provisional
Probab=99.26 E-value=1.6e-10 Score=109.23 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=84.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC------------------------CCCceEeecCCCc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYDRLRLHLAKQF 62 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~------------------------~y~~~~~~~~~~~ 62 (325)
.+||+||||||+||++|..|++.|++|+|+|+.+.....-+.. .+...........
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 4799999999999999999999999999999987543211110 0000000000111
Q ss_pred cC-----CCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533 63 CQ-----LPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (325)
Q Consensus 63 ~~-----~~~~~-~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (325)
.. +...+ .........++..+.+.|.+.+.+.++. ++++++|++++.++ +.+.+.+.++ .+ +
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~--~~v~v~~~~g-------~~-v 152 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ--AGCLTTLSNG-------ER-I 152 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC--CeeEEEECCC-------cE-E
Confidence 00 00000 0000112246778888888888888755 49999999998865 4566665442 57 8
Q ss_pred EeCeEEEcccCCC
Q 020533 137 SGRFLVVASGETT 149 (325)
Q Consensus 137 ~ad~vIiAtG~~~ 149 (325)
+|++||.|+|.+|
T Consensus 153 ~a~~vVgADG~~S 165 (487)
T PRK07190 153 QSRYVIGADGSRS 165 (487)
T ss_pred EeCEEEECCCCCH
Confidence 9999999999766
No 111
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.26 E-value=1.8e-12 Score=108.28 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=86.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH---
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (325)
||+|||||++|+.+|..|++.+.+++++|+.+..+..... . +... .. ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~--~-------~~~~-------~~---~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC--I-------PSPL-------LV---EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH--H-------HHHH-------HH---HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc--c-------cccc-------cc---cccccccccccccc
Confidence 7999999999999999999999999999887743210000 0 0000 00 00000001110
Q ss_pred -HHHHHHHHcCCCceeeeCeEEEEEEEcCCC---CcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (325)
Q Consensus 86 -yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~ 161 (325)
.+.+.+...++. +++++++.+++..... ..+.+....... ..+ +.||+||+||| +.|+.|.+||.+.
T Consensus 62 ~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~----~~~-~~~d~lviAtG--~~~~~~~i~g~~~ 132 (201)
T PF07992_consen 62 FKLVDQLKNRGVE--IRLNAKVVSIDPESKRVVCPAVTIQVVETGD----GRE-IKYDYLVIATG--SRPRTPNIPGEEV 132 (201)
T ss_dssp GHHHHHHHHHTHE--EEHHHTEEEEEESTTEEEETCEEEEEEETTT----EEE-EEEEEEEEEST--EEEEEESSTTTTT
T ss_pred cccccccccceEE--EeeccccccccccccccccCcccceeeccCC----ceE-ecCCeeeecCc--cccceeecCCCcc
Confidence 122222334433 3688899999776521 123333322221 277 99999999999 7788888888632
Q ss_pred cccCCCCCccEEecCCCCCCCCCCCCeEEEEC
Q 020533 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG 193 (325)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG 193 (325)
.. ....+.++..+..... ..++|+|||
T Consensus 133 ~~----~~~~~~~~~~~~~~~~-~~~~v~VvG 159 (201)
T PF07992_consen 133 AY----FLRGVDDAQRFLELLE-SPKRVAVVG 159 (201)
T ss_dssp EC----BTTSEEHHHHHHTHSS-TTSEEEEES
T ss_pred cc----cccccccccccccccc-ccccccccc
Confidence 10 0123344443333222 245999999
No 112
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.25 E-value=1.3e-10 Score=107.41 Aligned_cols=134 Identities=14% Similarity=0.225 Sum_probs=85.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----C--------------------ccCCC------CCCce
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKKY------SYDRL 54 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G----g--------------------~w~~~------~y~~~ 54 (325)
...+||+||||||+|+++|..|+++|++|+|+|+.+... + .|... .+..+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 345899999999999999999999999999999986421 1 11100 01111
Q ss_pred EeecCC--CccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533 55 RLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (325)
Q Consensus 55 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (325)
.+.... ....+..... .........+..+.+.|.+.+++.++. ++++++|++++.++ +.+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~--~~v~v~~~~g------ 153 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA--DRVRLRLDDG------ 153 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC--CeEEEEECCC------
Confidence 111100 0011111000 001111245678888888888887754 49999999998765 5677776543
Q ss_pred eEEEEEeCeEEEcccCCCC
Q 020533 132 IEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 132 ~~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +.+|.||.|+|.++.
T Consensus 154 -~~-~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 154 -RR-LEAALAIAADGAAST 170 (392)
T ss_pred -CE-EEeCEEEEecCCCch
Confidence 46 899999999997663
No 113
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=9.8e-11 Score=108.02 Aligned_cols=133 Identities=19% Similarity=0.300 Sum_probs=86.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC------------------CccCCC-----CCCceEeecCCC-
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA------------------SIWKKY-----SYDRLRLHLAKQ- 61 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G------------------g~w~~~-----~y~~~~~~~~~~- 61 (325)
..+||+|||||++|+++|..|++.|++|+|+|+.+..+ |.|..- .+..+.+.....
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 35799999999999999999999999999999986432 112110 111222211110
Q ss_pred cc-----CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 62 FC-----QLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 62 ~~-----~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.. .+....... .+....++..+.+.|.+.+.+++... +++++|++++.++ +.|.|++.++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 153 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT- 153 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence 00 000000000 11112567788888888887775433 8899999998754 6688877653 56
Q ss_pred EEeCeEEEcccCCCC
Q 020533 136 YSGRFLVVASGETTN 150 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~ 150 (325)
+.+|.||.|+|.+|.
T Consensus 154 ~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 154 LSARLVVGADGRNSP 168 (388)
T ss_pred EEEeEEEEecCCCch
Confidence 899999999997663
No 114
>PRK07045 putative monooxygenase; Reviewed
Probab=99.22 E-value=3.6e-10 Score=104.32 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=85.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CC--ccCCC-------------------CCCceEeecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS--IWKKY-------------------SYDRLRLHLAK 60 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg--~w~~~-------------------~y~~~~~~~~~ 60 (325)
.++||+||||||+|+++|..|++.|++|+|+|+.+.. ++ .+... ....+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 3579999999999999999999999999999998754 21 11110 01111111111
Q ss_pred C-ccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533 61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (325)
Q Consensus 61 ~-~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (325)
. ...++.... +..+....++.++.+.|.+.+.... ...++++++|++++.+++...+.|++.++ .+ +.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~~ 154 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLP-NVRLRFETSIERIERDADGTVTSVTLSDG-------ER-VAP 154 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCC-CeeEEeCCEEEEEEECCCCcEEEEEeCCC-------CE-EEC
Confidence 1 111111000 0111112467788888887765432 24469999999998875333456776543 46 899
Q ss_pred CeEEEcccCCCC
Q 020533 139 RFLVVASGETTN 150 (325)
Q Consensus 139 d~vIiAtG~~~~ 150 (325)
|.||.|+|.+|.
T Consensus 155 ~~vIgADG~~S~ 166 (388)
T PRK07045 155 TVLVGADGARSM 166 (388)
T ss_pred CEEEECCCCChH
Confidence 999999998763
No 115
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.22 E-value=9.1e-11 Score=95.54 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=86.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-CccCCC-CCCceEeecCCCcc-CCCCCCCCCCCC--CCCCHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKY-SYDRLRLHLAKQFC-QLPHLPFPSSYP--MFVSRA 81 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-g~w~~~-~y~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 81 (325)
..||+|+|||||||+||++|++.|++|+||||+-.+| |.|.-. .++.+...-+.... +--..++.+.-. .-....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 3699999999999999999999999999999998886 588654 35555554442211 000111111111 123556
Q ss_pred HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCC------cEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN------MWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~------~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
++..-+...+-+.+... .-.+.|+.+-..++.. .|+-....+-+- .+.. +++++||-|||+-
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhv--DPl~-i~a~~VvDaTGHd 177 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHV--DPLT-IRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhccccc--Ccce-eeEEEEEeCCCCc
Confidence 67777777777777543 6677888775544321 233222221111 2357 8999999999963
No 116
>PRK06185 hypothetical protein; Provisional
Probab=99.22 E-value=2.5e-10 Score=106.00 Aligned_cols=135 Identities=19% Similarity=0.357 Sum_probs=84.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----CCc--------------cCCC---C---CCceEeecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASI--------------WKKY---S---YDRLRLHLAK 60 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-----Gg~--------------w~~~---~---y~~~~~~~~~ 60 (325)
..+||+|||||++|+++|..|++.|++|+|+|+++.. |.. |..- . +..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 3589999999999999999999999999999997642 211 2110 0 1111111111
Q ss_pred C-c--cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEE
Q 020533 61 Q-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEY 135 (325)
Q Consensus 61 ~-~--~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~ 135 (325)
. . ..+...+.+..+..+.++.++.++|.+.+.+. ++ .++++++|+++..++ +.+ .|.+...++ + .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~--~~v~~v~~~~~~g---~-~~- 155 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG--GRVTGVRARTPDG---P-GE- 155 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC--CEEEEEEEEcCCC---c-EE-
Confidence 1 0 11111111111223457788888888888765 44 458999999998764 333 344443221 1 47
Q ss_pred EEeCeEEEcccCCC
Q 020533 136 YSGRFLVVASGETT 149 (325)
Q Consensus 136 ~~ad~vIiAtG~~~ 149 (325)
++++.||.|+|.+|
T Consensus 156 i~a~~vI~AdG~~S 169 (407)
T PRK06185 156 IRADLVVGADGRHS 169 (407)
T ss_pred EEeCEEEECCCCch
Confidence 89999999999876
No 117
>PRK10015 oxidoreductase; Provisional
Probab=99.21 E-value=3.3e-10 Score=105.65 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=82.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------ccCCCC----CCceEee------c---------CC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKKYS----YDRLRLH------L---------AK 60 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------~w~~~~----y~~~~~~------~---------~~ 60 (325)
.++||+||||||+|+++|+.|++.|++|+|+||.+.+|. ...... .+.+... . ..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 358999999999999999999999999999999876542 111110 1111000 0 00
Q ss_pred CccCCCC--CC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533 61 QFCQLPH--LP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (325)
Q Consensus 61 ~~~~~~~--~~--~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (325)
....+.. .. .+........+..+.++|.+.+++.+... +.+++|+.+..++ +.+.....+. .+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~-------~~-i 151 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD-------DI-L 151 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC-------eE-E
Confidence 0000000 00 00000122467888889999999888654 8899999987654 4444322221 57 8
Q ss_pred EeCeEEEcccCCC
Q 020533 137 SGRFLVVASGETT 149 (325)
Q Consensus 137 ~ad~vIiAtG~~~ 149 (325)
.|+.||+|+|..+
T Consensus 152 ~A~~VI~AdG~~s 164 (429)
T PRK10015 152 EANVVILADGVNS 164 (429)
T ss_pred ECCEEEEccCcch
Confidence 9999999999754
No 118
>PRK06753 hypothetical protein; Provisional
Probab=99.21 E-value=2.7e-10 Score=104.50 Aligned_cols=127 Identities=18% Similarity=0.237 Sum_probs=82.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC------------------------CCCCceEeecCCCccC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAKQFCQ 64 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~------------------------~~y~~~~~~~~~~~~~ 64 (325)
+|+|||||++|+++|..|++.|++|+|+|+++.+...... ...+......+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998754311000 00111111111000 0
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533 65 LPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (325)
Q Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi 143 (325)
+...++... .....++..+.+.|.+.+.. ..++++++|++++.++ +.+.|++.++ .+ +.+|.||.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vig 146 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCIG 146 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEEE
Confidence 000111100 11235778888888776543 3469999999998654 6688877654 56 89999999
Q ss_pred cccCCCC
Q 020533 144 ASGETTN 150 (325)
Q Consensus 144 AtG~~~~ 150 (325)
|.|.+|.
T Consensus 147 adG~~S~ 153 (373)
T PRK06753 147 ADGIHSK 153 (373)
T ss_pred CCCcchH
Confidence 9997764
No 119
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.21 E-value=8.3e-11 Score=98.62 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=84.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCcc------------------------
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC------------------------ 63 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~------------------------ 63 (325)
.+|+|||+|++|++||..|+..|.+|+||||...+||.-..++-++...+....++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 36999999999999999999999999999999999997666554444433322222
Q ss_pred ----CCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533 64 ----QLPHL---PFPSS--YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (325)
Q Consensus 64 ----~~~~~---~~~~~--~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (325)
.+..- +.++. +..-+.-..+.+||. .++.+ .++++|+.+-+.+ +.|+++.+++. ..
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~ 146 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH 146 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchh--hhhhhhhhheecC--CeeEEEecCCC------cc
Confidence 12111 11111 122233344444433 24444 9999999998874 88999997754 44
Q ss_pred EEEeCeEEEcccC
Q 020533 135 YYSGRFLVVASGE 147 (325)
Q Consensus 135 ~~~ad~vIiAtG~ 147 (325)
..+|.||+|.=.
T Consensus 147 -~~~d~vvla~PA 158 (331)
T COG3380 147 -TQFDDVVLAIPA 158 (331)
T ss_pred -cccceEEEecCC
Confidence 789999999864
No 120
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.21 E-value=2.3e-10 Score=106.04 Aligned_cols=131 Identities=20% Similarity=0.313 Sum_probs=85.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCC---------------------ccCC-----CCCCceEeecC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS---------------------IWKK-----YSYDRLRLHLA 59 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg---------------------~w~~-----~~y~~~~~~~~ 59 (325)
+||+||||||+|+++|..|++.| ++|+|+|+.+.... .|.. ..+..+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 99999999864211 1100 00111111110
Q ss_pred CC-------ccCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533 60 KQ-------FCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (325)
Q Consensus 60 ~~-------~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (325)
.. ...+... .....+.....+.++.+.|.+.+.+.++. ++++++|++++.++ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC--CEEEEEECCC------
Confidence 00 0011000 00111112357889999999998887754 49999999998765 5677777553
Q ss_pred eEEEEEeCeEEEcccCCCC
Q 020533 132 IEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 132 ~~~~~~ad~vIiAtG~~~~ 150 (325)
.. +.+|.||.|+|.++.
T Consensus 152 -~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 -SV-LEARLLVAADGARSK 168 (403)
T ss_pred -CE-EEeCEEEEcCCCChH
Confidence 46 899999999997653
No 121
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.20 E-value=1.4e-10 Score=107.72 Aligned_cols=133 Identities=15% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-------------CC--------------ccCCC----C--CCc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------------AS--------------IWKKY----S--YDR 53 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-------------Gg--------------~w~~~----~--y~~ 53 (325)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..- . +..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 379999999999999999999999999999998621 10 11100 0 011
Q ss_pred eEeecCCCc--cCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533 54 LRLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (325)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (325)
+........ ..+...... ........+..+.+.|.+.+.+.++ .+++++++++++.++ +.|.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSG--DDWLLTLADG----- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 111111100 011100000 0001123456777777777776664 458999999998765 5688877653
Q ss_pred eeEEEEEeCeEEEcccCCCCC
Q 020533 131 EIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 131 ~~~~~~~ad~vIiAtG~~~~p 151 (325)
.+ +.+|.||.|+|.+|.-
T Consensus 153 --~~-~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 153 --RQ-LRAPLVVAADGANSAV 170 (405)
T ss_pred --CE-EEeCEEEEecCCCchh
Confidence 46 8999999999987743
No 122
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.20 E-value=2.2e-10 Score=105.48 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=83.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--------CccCC-----------CC-----------CCceEeec
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--------SIWKK-----------YS-----------YDRLRLHL 58 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--------g~w~~-----------~~-----------y~~~~~~~ 58 (325)
||+|||||++|+++|..|+++|++|+|+||.+..+ ..... .. +..+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 69999999999999999999999999999997532 10100 00 11111111
Q ss_pred CCCc--cCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 59 AKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 59 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.... ..+....... .......+.++.+.|.+.+.+.+ ...++++++|++++.++ +.+.++++++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 149 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYP-NVTLLCPARVVELPRHS--DHVELTLDDG-------QQ- 149 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCC-CcEEecCCeEEEEEecC--CeeEEEECCC-------CE-
Confidence 1100 0011000000 01122567788888888888776 13459999999998765 6677777653 46
Q ss_pred EEeCeEEEcccCCCC
Q 020533 136 YSGRFLVVASGETTN 150 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~ 150 (325)
+.+|.||.|+|.++.
T Consensus 150 ~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 150 LRARLLVGADGANSK 164 (385)
T ss_pred EEeeEEEEeCCCCCH
Confidence 899999999997664
No 123
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.19 E-value=5.1e-10 Score=103.47 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=83.6
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC------------------CCCCceEeecCCCc-cCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------YSYDRLRLHLAKQF-CQLPHL 68 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~------------------~~y~~~~~~~~~~~-~~~~~~ 68 (325)
+||+||||||+|+++|..|++.|++|+|+|++...+..+.. +...+..+..+... ..+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 48999999999999999999999999999998653321111 01112222222111 001100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEc-CCCCcEEEEEeecC----CCCceeEEEEEeCeEEE
Q 020533 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLL----SPGREIEEYYSGRFLVV 143 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~~~ad~vIi 143 (325)
.....+-....+..+.++|.+.+.+.|... +.+ ++.+++.. ...+.+.|++...+ ++ +..+ ++|+.||.
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-i~a~~VIg 154 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSG--TRCT-LEVDAVIG 154 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCC--CccE-EEeCEEEE
Confidence 001111123688999999999999988654 555 46666542 22355777654321 01 2257 89999999
Q ss_pred cccCCC
Q 020533 144 ASGETT 149 (325)
Q Consensus 144 AtG~~~ 149 (325)
|+|..|
T Consensus 155 ADG~~S 160 (398)
T TIGR02028 155 ADGANS 160 (398)
T ss_pred CCCcch
Confidence 999765
No 124
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.18 E-value=2.1e-10 Score=106.11 Aligned_cols=134 Identities=23% Similarity=0.248 Sum_probs=84.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc------cCC--------CCC----------CceEeec---C
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSY----------DRLRLHL---A 59 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~------w~~--------~~y----------~~~~~~~---~ 59 (325)
+.||+|||||++||++|..|++.|++|+|+||.+.++.. |.. ... ....... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 469999999999999999999999999999998765421 100 000 0111100 0
Q ss_pred CCccCCCCCC-CCCCC--C-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 60 KQFCQLPHLP-FPSSY--P-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 60 ~~~~~~~~~~-~~~~~--~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.....++... ....+ + ....+.++.+.|.+.+.+.+ ...+++++++++++.++ +.+.+++.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~~~~~~~v~~i~~~~--~~v~v~~~~g-------~~- 152 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHP-LVEFRTSTHVVGIEQDG--DGVTVFDQQG-------NR- 152 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcC-CcEEEeCCEEEEEecCC--CceEEEEcCC-------CE-
Confidence 0000000000 00000 1 12467788888888877654 13458999999998654 5677776553 56
Q ss_pred EEeCeEEEcccCCCCC
Q 020533 136 YSGRFLVVASGETTNP 151 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~p 151 (325)
+.+|.||.|+|.+|..
T Consensus 153 ~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 153 WTGDALIGCDGVKSVV 168 (396)
T ss_pred EecCEEEECCCcChHH
Confidence 8999999999987644
No 125
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.18 E-value=3.6e-10 Score=104.23 Aligned_cols=134 Identities=21% Similarity=0.287 Sum_probs=88.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CC---C----------------CccC---C---CCCCceEeecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CY---A----------------SIWK---K---YSYDRLRLHLAK 60 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~---G----------------g~w~---~---~~y~~~~~~~~~ 60 (325)
.+||+||||||+|+++|..|++.|++|+|+|+.+ .. | |.+. . ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999982 11 1 0100 0 011111222111
Q ss_pred C-ccCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533 61 Q-FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (325)
Q Consensus 61 ~-~~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (325)
. ...+...... .......++.++.+.|.+.+.+.+. ..++++++|+.++.++ +.+++++.. ++ .+ +.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~~~~~~~v~~~~~~~--~~v~v~l~~-dG-----~~-~~a 151 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPN-VTLRFGAEVEAVEQDG--DGVTVTLSF-DG-----ET-LDA 151 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCC-cEEEcCceEEEEEEcC--CceEEEEcC-CC-----cE-Eec
Confidence 1 1111111111 1112345788999999999988762 3459999999999876 566677773 22 57 999
Q ss_pred CeEEEcccCCCC
Q 020533 139 RFLVVASGETTN 150 (325)
Q Consensus 139 d~vIiAtG~~~~ 150 (325)
|.||.|.|.+|.
T Consensus 152 ~llVgADG~~S~ 163 (387)
T COG0654 152 DLLVGADGANSA 163 (387)
T ss_pred CEEEECCCCchH
Confidence 999999998763
No 126
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.17 E-value=3.1e-10 Score=104.79 Aligned_cols=133 Identities=18% Similarity=0.314 Sum_probs=83.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----C---------------------CccCCC------CCCce
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----A---------------------SIWKKY------SYDRL 54 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----G---------------------g~w~~~------~y~~~ 54 (325)
+.+||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|..- .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 3589999999999999999999999999999987521 1 112110 01111
Q ss_pred Eee-cCCCccCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533 55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (325)
Q Consensus 55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (325)
... .......+....... .......+..+.+.|.+.+... ++. ++++++|++++.++ +.|.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC--CeEEEEECCC------
Confidence 110 000000011000000 0011245677888888877765 544 48899999987654 5688877653
Q ss_pred eEEEEEeCeEEEcccCCCC
Q 020533 132 IEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 132 ~~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +++|.||.|+|.+|.
T Consensus 154 -~~-~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 -EE-IQAKLVIGADGANSQ 170 (391)
T ss_pred -CE-EEeCEEEEeCCCCch
Confidence 46 899999999998764
No 127
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.16 E-value=4.1e-10 Score=103.85 Aligned_cols=130 Identities=14% Similarity=0.196 Sum_probs=82.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---CccCCCC----------------CC-----------ceEe
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYS----------------YD-----------RLRL 56 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G---g~w~~~~----------------y~-----------~~~~ 56 (325)
++||+|||||++|+++|..|++.|++|+|+|+.+... ..|..+. .+ .+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 5799999999999999999999999999999987642 2222110 00 0000
Q ss_pred ecCCCccCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533 57 HLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (325)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~yl~~~a~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (325)
... ....+....+....+ ....+..+.+.|.+.+.+.+ +. ++ +++|++++.++ +.+.|++.++
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~--~~~~v~~~~g------- 151 (388)
T PRK07608 85 FGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP--DAATLTLADG------- 151 (388)
T ss_pred EEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC--CeEEEEECCC-------
Confidence 000 000000000001111 11357788888888888776 43 25 88999887654 5677777653
Q ss_pred EEEEEeCeEEEcccCCCC
Q 020533 133 EEYYSGRFLVVASGETTN 150 (325)
Q Consensus 133 ~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +++|.||.|+|.++.
T Consensus 152 ~~-~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QV-LRADLVVGADGAHSW 168 (388)
T ss_pred CE-EEeeEEEEeCCCCch
Confidence 46 899999999998664
No 128
>PRK07538 hypothetical protein; Provisional
Probab=99.16 E-value=2.6e-09 Score=99.45 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=83.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----Cc--cCC--------CCC----------CceEeecCC--C
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YSY----------DRLRLHLAK--Q 61 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G----g~--w~~--------~~y----------~~~~~~~~~--~ 61 (325)
+||+|||||++||++|..|++.|++|+|||+.+.+. |. +.. ..+ ......... .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 379999999999999999999999999999987542 11 000 000 111111100 0
Q ss_pred ccCCCCCCCCC--CCCC-CCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533 62 FCQLPHLPFPS--SYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (325)
Q Consensus 62 ~~~~~~~~~~~--~~~~-~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (325)
....+ ..... .++. ...+.++.+.|.+.+.+ .+. ..++++++|++++.++ +...+.+.++..+ +..+ +.
T Consensus 81 ~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~ 153 (413)
T PRK07538 81 IWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VR 153 (413)
T ss_pred Eeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EE
Confidence 00000 00000 1111 25678888888877654 453 3469999999998765 3355555543222 2257 89
Q ss_pred eCeEEEcccCCCCC
Q 020533 138 GRFLVVASGETTNP 151 (325)
Q Consensus 138 ad~vIiAtG~~~~p 151 (325)
+|.||.|+|.+|.-
T Consensus 154 adlvIgADG~~S~v 167 (413)
T PRK07538 154 GDVLIGADGIHSAV 167 (413)
T ss_pred eeEEEECCCCCHHH
Confidence 99999999987743
No 129
>PRK07588 hypothetical protein; Provisional
Probab=99.16 E-value=3.2e-10 Score=104.75 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=83.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--C-c---cCCC------------------CCCceEeecCC--C
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLAK--Q 61 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--g-~---w~~~------------------~y~~~~~~~~~--~ 61 (325)
.||+|||||++|+++|..|++.|++|+|+|+.+... | . |... ....+.+.... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 379999999999999999999999999999887542 1 1 1110 01111111111 1
Q ss_pred ccCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533 62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (325)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (325)
...++...+..... ...++.++.+.|.+.+.. + ..++++++|++++.++ +.|+|+++++ .+ +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q--VETIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C--eEEEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence 11111111111111 134567777777664432 3 4569999999998765 6688887764 46 789
Q ss_pred CeEEEcccCCCCCC
Q 020533 139 RFLVVASGETTNPF 152 (325)
Q Consensus 139 d~vIiAtG~~~~p~ 152 (325)
|.||.|+|.+|.-+
T Consensus 148 d~vIgADG~~S~vR 161 (391)
T PRK07588 148 DLVIGADGLHSHVR 161 (391)
T ss_pred CEEEECCCCCccch
Confidence 99999999876543
No 130
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.16 E-value=5.1e-10 Score=102.63 Aligned_cols=121 Identities=24% Similarity=0.303 Sum_probs=83.4
Q ss_pred eEEEECCChHHHHHHHHH--HhcCCCeEEEecCCCC--CC--ccCC-------------CCCCceEeecCCCccCCCCCC
Q 020533 9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKK-------------YSYDRLRLHLAKQFCQLPHLP 69 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L--~~~g~~v~v~e~~~~~--Gg--~w~~-------------~~y~~~~~~~~~~~~~~~~~~ 69 (325)
||+|||||++|+++|.+| .+.|.+|+|+|+++.. .. +|.. ..|++..+..+.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~--- 77 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI--- 77 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEc---
Confidence 799999999999999999 7789999999998766 22 2321 112222222221111110
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 70 FPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 70 ~~~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
..+ ....+..+.+++.+.+...+ . ++++++|.+++... ..+.|++.++ .+ ++|+.||.|+|..
T Consensus 78 ---~~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 78 ---DYPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPS 141 (374)
T ss_pred ---ccceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCcc
Confidence 011 13678899999998888444 2 38999999998875 4677777765 57 9999999999953
No 131
>PRK11445 putative oxidoreductase; Provisional
Probab=99.16 E-value=7.2e-10 Score=100.83 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=81.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---------CCccCCC---------CC-CceEeecCCC----ccC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---------ASIWKKY---------SY-DRLRLHLAKQ----FCQ 64 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~---------Gg~w~~~---------~y-~~~~~~~~~~----~~~ 64 (325)
+||+||||||+|+++|..|++. ++|+++|+.+.. |+....+ .. +......+.. ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 999999988743 2211100 00 0000000000 000
Q ss_pred CCC-CCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533 65 LPH-LPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (325)
Q Consensus 65 ~~~-~~~~~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (325)
+.. ........ ....+.++.+.|.+.+ ..++ .+++++++.+++.++ +.|.|.+.... +..+ +++|.||
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~vV 150 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYLV 150 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEEE
Confidence 100 00000101 1267888888888744 4454 459999999998765 56888764321 1147 8999999
Q ss_pred EcccCCCC
Q 020533 143 VASGETTN 150 (325)
Q Consensus 143 iAtG~~~~ 150 (325)
.|+|..|.
T Consensus 151 ~AdG~~S~ 158 (351)
T PRK11445 151 GADGANSM 158 (351)
T ss_pred ECCCCCcH
Confidence 99998764
No 132
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.16 E-value=1.3e-09 Score=106.13 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCC--C----ccCC----------------C--CCCceEeecC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYA--S----IWKK----------------Y--SYDRLRLHLA 59 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~G--g----~w~~----------------~--~y~~~~~~~~ 59 (325)
+.++||+||||||+||++|..|++. |++|+|+|+.+..- | .+.. . ....+....+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3468999999999999999999995 99999999886321 1 0100 0 0011111111
Q ss_pred C-----Ccc---CCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC-CCcEEEEEeecC--
Q 020533 60 K-----QFC---QLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLL-- 126 (325)
Q Consensus 60 ~-----~~~---~~~~~~~~-~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~-- 126 (325)
. ... .+...+.. ..++ ...++..+.+.|.+.+.+.+....+++++++++++.+++ ....+|++++.+
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0 000 00000000 0111 235677889999998887765445689999999987642 234677776531
Q ss_pred -CCCceeEEEEEeCeEEEcccCCCC
Q 020533 127 -SPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 127 -~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +..+ ++||+||.|.|.+|.
T Consensus 190 ~~g--~~~t-v~A~~lVGaDGa~S~ 211 (634)
T PRK08294 190 HEG--EEET-VRAKYVVGCDGARSR 211 (634)
T ss_pred CCC--ceEE-EEeCEEEECCCCchH
Confidence 11 2367 999999999998774
No 133
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.15 E-value=3.6e-10 Score=105.83 Aligned_cols=136 Identities=17% Similarity=0.278 Sum_probs=84.1
Q ss_pred CeEEEECCChHHHHHHHHHHh----cCCCeEEEecCC--CCC--------C---------------------ccCCC---
Q 020533 8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKKY--- 49 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~----~g~~v~v~e~~~--~~G--------g---------------------~w~~~--- 49 (325)
+||+||||||+|+++|..|++ .|++|+|+|+++ ..- | .|..-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999943 211 1 11100
Q ss_pred ---CCCceEeecCCC--ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceeeeCeEEEEEEEc-----CCCCcE
Q 020533 50 ---SYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW 118 (325)
Q Consensus 50 ---~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l-~~~i~~~~~V~~i~~~-----~~~~~~ 118 (325)
.+..+....... ...++............++..+.+.|.+.+.+.+- ...++++++|++++.. +....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 011111111111 11111111000111124678888888888877641 2455999999999763 223456
Q ss_pred EEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 119 NVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
+|++.++ .+ +++|.||.|.|.+|.-
T Consensus 161 ~v~~~~g-------~~-i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSDG-------QV-LYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcCC-------CE-EEeeEEEEecCCCChh
Confidence 7776553 57 8999999999987744
No 134
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.15 E-value=8.6e-10 Score=103.21 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=84.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CCccCCC--------------CCCceEeecCCCc-cCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKY--------------SYDRLRLHLAKQF-CQLP 66 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg~w~~~--------------~y~~~~~~~~~~~-~~~~ 66 (325)
..+||+||||||+|+++|..|++.|++|+|+|++... ||..... ...++++..+... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 3589999999999999999999999999999987531 2210000 0111222221110 0111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcC-CCCcEEEEEeecC----CCCceeEEEEEeCeE
Q 020533 67 HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLL----SPGREIEEYYSGRFL 141 (325)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~----~~~~~~~~~~~ad~v 141 (325)
....+..+-....+..+.++|.+.+.+.|... +.+ ++.+++... ..+.+.|++.+.. ++ +..+ +.+|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-v~a~~V 191 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAG--TPKT-LEVDAV 191 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCC--CccE-EEeCEE
Confidence 00001111112688999999999999988654 544 577776432 2355777765421 01 2257 899999
Q ss_pred EEcccCCC
Q 020533 142 VVASGETT 149 (325)
Q Consensus 142 IiAtG~~~ 149 (325)
|.|+|..|
T Consensus 192 IgADG~~S 199 (450)
T PLN00093 192 IGADGANS 199 (450)
T ss_pred EEcCCcch
Confidence 99999765
No 135
>PLN02697 lycopene epsilon cyclase
Probab=99.14 E-value=1.6e-09 Score=102.66 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---CccCCCCCCceEe------ecCCCccCCCCCC-CCCCC-
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRL------HLAKQFCQLPHLP-FPSSY- 74 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G---g~w~~~~y~~~~~------~~~~~~~~~~~~~-~~~~~- 74 (325)
..+||+||||||+|+++|..|++.|++|+++|+..... |+|... ...+.+ ..+.....++... .....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 35899999999999999999999999999999864433 455321 100000 0000000011000 00000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEE-EeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVK-ASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 75 ~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
-....+..+.+.|.+.+.+.++. .++++|+.+..++ +.+.+. ..++ .+ +.++.||+|+|..+
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence 01367888999999988887754 4778899887654 445443 3332 56 89999999999876
No 136
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.14 E-value=6.6e-10 Score=102.03 Aligned_cols=131 Identities=15% Similarity=0.247 Sum_probs=85.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-------C----------------CccCC-----CCCCceEeecC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------A----------------SIWKK-----YSYDRLRLHLA 59 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-------G----------------g~w~~-----~~y~~~~~~~~ 59 (325)
+||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|.. ..+..+....+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 68999999999999999999999999999986321 1 12211 01122222111
Q ss_pred C--CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (325)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (325)
. ....+... ..........+.++.+.|.+.+.+.+. ..++++++++++..++ +.+.|.+.+ .+ +.
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~~ 148 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN--DYSIIKFDD--------KQ-IK 148 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC--CeEEEEEcC--------CE-Ee
Confidence 1 11111110 000111235788999999998887752 3458899999997765 567777743 35 89
Q ss_pred eCeEEEcccCCCCC
Q 020533 138 GRFLVVASGETTNP 151 (325)
Q Consensus 138 ad~vIiAtG~~~~p 151 (325)
+|.||.|+|.+|.-
T Consensus 149 adlvIgADG~~S~v 162 (374)
T PRK06617 149 CNLLIICDGANSKV 162 (374)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987754
No 137
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.13 E-value=1.1e-09 Score=101.11 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=81.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---C----C--------------ccCC-----CCCCceEeecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----S--------------IWKK-----YSYDRLRLHLAK 60 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~---G----g--------------~w~~-----~~y~~~~~~~~~ 60 (325)
++||+||||||+|+++|..|++.|++|+|+|+.+.. + + .|.. .....+.+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 478999999999999999999999999999998741 1 1 1100 011112211111
Q ss_pred CccCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533 61 QFCQLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139 (325)
Q Consensus 61 ~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 139 (325)
....++....... .....++.++.+.|.+.+...+.. +++++++++++..+ .....|++.... +..+ +++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~-~~~~~V~~~~~G----~~~~-i~ad 153 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFD-SDRPYVTYEKDG----EEHR-LDCD 153 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecC-CCceEEEEEcCC----eEEE-EEeC
Confidence 1111111000000 001123556666676666666655 49999999887522 234456653211 2357 8999
Q ss_pred eEEEcccCCCCC
Q 020533 140 FLVVASGETTNP 151 (325)
Q Consensus 140 ~vIiAtG~~~~p 151 (325)
.||.|.|.+|.-
T Consensus 154 ~vVgADG~~S~v 165 (392)
T PRK08243 154 FIAGCDGFHGVS 165 (392)
T ss_pred EEEECCCCCCch
Confidence 999999987754
No 138
>PRK09126 hypothetical protein; Provisional
Probab=99.13 E-value=8.1e-10 Score=102.08 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=79.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC--------CC---ccCC--------CCCC-----------ceEe
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYD-----------RLRL 56 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~--------Gg---~w~~--------~~y~-----------~~~~ 56 (325)
++||+||||||+|+++|..|+++|++|+|+||.+.. |. .+.. ..++ ...+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 479999999999999999999999999999998642 21 0100 0010 1111
Q ss_pred ecCCCc--cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533 57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (325)
Q Consensus 57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (325)
...... ..++.... ........++..+.+.+.+.+.. .++ .++++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 111000 01100000 00011113455666666555533 454 459999999998754 5677777553
Q ss_pred EEEEEeCeEEEcccCCCC
Q 020533 133 EEYYSGRFLVVASGETTN 150 (325)
Q Consensus 133 ~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +.+|.||.|+|.++.
T Consensus 152 ~~-~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 152 RR-LTARLLVAADSRFSA 168 (392)
T ss_pred CE-EEeCEEEEeCCCCch
Confidence 46 899999999997654
No 139
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.12 E-value=6.9e-10 Score=102.59 Aligned_cols=126 Identities=22% Similarity=0.360 Sum_probs=83.7
Q ss_pred EEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC-----CCc-cCCC-----------CCC----
Q 020533 11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA-----KQF-CQLP-----------HLP---- 69 (325)
Q Consensus 11 ~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~-----~~~-~~~~-----------~~~---- 69 (325)
+|||||++|+++|..|++.|.+|+|+|+++.+|+.+....- -+++.. ..+ ..++ .+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~--grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGG--GRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCC--ceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 69999999999999999999999999999988865432110 011100 000 0000 000
Q ss_pred ----------C--CCCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533 70 ----------F--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (325)
Q Consensus 70 ----------~--~~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (325)
+ ......|+ ...++.+.+.+.+++.++. ++++++|++++.++ +.|.+++.. .+
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~--~~~~v~~~~--------~~ 146 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD--NGFGVETSG--------GE 146 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC--CeEEEEECC--------cE
Confidence 0 00011222 3578888999999888865 49999999997654 567776632 46
Q ss_pred EEEeCeEEEcccCCCCC
Q 020533 135 YYSGRFLVVASGETTNP 151 (325)
Q Consensus 135 ~~~ad~vIiAtG~~~~p 151 (325)
+.+|.||+|+|.++.|
T Consensus 147 -i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 147 -YEADKVILATGGLSYP 162 (400)
T ss_pred -EEcCEEEECCCCcccC
Confidence 8999999999986654
No 140
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.12 E-value=4.5e-10 Score=103.38 Aligned_cols=130 Identities=19% Similarity=0.212 Sum_probs=82.0
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCC----------ccCC--------CCC----------CceEeecC
Q 020533 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSY----------DRLRLHLA 59 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg----------~w~~--------~~y----------~~~~~~~~ 59 (325)
||+||||||+|+++|..|+++| ++|+|+|+.+...- .+.. ..+ ....+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999764311 0100 000 01111000
Q ss_pred CC--ccCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 60 KQ--FCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 60 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.. ...+....+..... ....+.++.+.|.+.+... ++. ++++++|+++..++ +.|+|++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ--DYVRVTLDNG-------QQ- 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence 00 00000000000000 1245778888898888774 644 48899999998765 5677877543 46
Q ss_pred EEeCeEEEcccCCCC
Q 020533 136 YSGRFLVVASGETTN 150 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~ 150 (325)
+.||.||.|+|.+|.
T Consensus 149 ~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 149 LRAKLLIAADGANSK 163 (382)
T ss_pred EEeeEEEEecCCChH
Confidence 899999999997763
No 141
>PRK07236 hypothetical protein; Provisional
Probab=99.10 E-value=1e-09 Score=101.21 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=79.3
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CC-c-cCCC---------CCCceEeecCCC---c
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-I-WKKY---------SYDRLRLHLAKQ---F 62 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg-~-w~~~---------~y~~~~~~~~~~---~ 62 (325)
|..+. ..+|+|||||++||++|..|++.|++|+|+|+.+.. |+ . ...+ ..+......+.. +
T Consensus 1 ~~~~~-~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 1 MTHMS-GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIY 79 (386)
T ss_pred CCCCC-CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEE
Confidence 44433 479999999999999999999999999999998632 11 0 0000 000000000000 0
Q ss_pred cCCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCe
Q 020533 63 CQLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF 140 (325)
Q Consensus 63 ~~~~~~~~~-~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~ 140 (325)
......... ...+ .......+.+.|.+ .+. ...++++++|++++.++ +.++|++.++ .+ +.+|.
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~ 145 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADL 145 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCE
Confidence 000000000 0000 12234455554443 232 23469999999998764 5688887764 56 89999
Q ss_pred EEEcccCCCCC
Q 020533 141 LVVASGETTNP 151 (325)
Q Consensus 141 vIiAtG~~~~p 151 (325)
||.|.|.+|.-
T Consensus 146 vIgADG~~S~v 156 (386)
T PRK07236 146 LVGADGGRSTV 156 (386)
T ss_pred EEECCCCCchH
Confidence 99999987754
No 142
>PRK06996 hypothetical protein; Provisional
Probab=99.09 E-value=1.6e-09 Score=100.39 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcC----CCeEEEecCCCCC---------------------CccCCCCCC--ceEeec
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSYD--RLRLHL 58 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g----~~v~v~e~~~~~G---------------------g~w~~~~y~--~~~~~~ 58 (325)
..+||+||||||+|+++|..|++.| ++|+|+|+.+... |.|....++ ......
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4579999999999999999999987 4699999975321 122221111 111111
Q ss_pred CCC----ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533 59 AKQ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (325)
Q Consensus 59 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (325)
... ......+..+. .....++.++.+.|.+.+...++ .+++++++++++.+. ..+++++.+++++ .+
T Consensus 90 ~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~--~~v~v~~~~~~g~----~~ 160 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDA--DGVTLALGTPQGA----RT 160 (398)
T ss_pred CCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecC--CeEEEEECCCCcc----eE
Confidence 010 01111111111 01125678899999999888875 458999999987654 6688877654332 57
Q ss_pred EEEeCeEEEcccC
Q 020533 135 YYSGRFLVVASGE 147 (325)
Q Consensus 135 ~~~ad~vIiAtG~ 147 (325)
+++|+||.|+|.
T Consensus 161 -i~a~lvIgADG~ 172 (398)
T PRK06996 161 -LRARIAVQAEGG 172 (398)
T ss_pred -EeeeEEEECCCC
Confidence 899999999995
No 143
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.07 E-value=2.4e-10 Score=93.60 Aligned_cols=135 Identities=17% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-ccCC-CCCCceEeecCCCcc----CCCCCCCCCCCCCCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (325)
.+||+||||||+||++|+.|++.|++|++||++..+|| .|.. ..++.+..+.+...+ ..+..++.+. -...+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g-~~v~d~ 95 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG-YYVADS 95 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE-EEES-H
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe-EEEEcH
Confidence 57999999999999999999999999999999988875 7865 356666666543321 1111111111 112466
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc-------EEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM-------WNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
.++...|...+-+.|... +-.+.|+.+-..++ ++ |+.....+.+- .+.. ++++.||-|||+-
T Consensus 96 ~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHv--DPl~-i~ak~ViDaTGHd 164 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHV--DPLT-IRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T---B-EE-EEESEEEE---SS
T ss_pred HHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCC--Ccce-EEEeEEEeCCCCc
Confidence 778888887777777543 66677887755442 22 21111111111 2367 9999999999963
No 144
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.07 E-value=1.6e-09 Score=100.16 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=79.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCC-----C------CccCC--------CCCC----------ce
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYD----------RL 54 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~-----G------g~w~~--------~~y~----------~~ 54 (325)
.+||+||||||+|+++|..|+++ |++|+|+|+.... + +.+.. ..++ .+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 9999999995211 1 01100 0011 11
Q ss_pred EeecCCCcc--CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533 55 RLHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (325)
Q Consensus 55 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (325)
......... .+......... .....+.++.+.|.+.+... ++ .++++++|+++..++ +.|.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 110000000 00000000000 01234566777777766553 43 458899999987654 6688877653
Q ss_pred eeEEEEEeCeEEEcccCCCC
Q 020533 131 EIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 131 ~~~~~~~ad~vIiAtG~~~~ 150 (325)
.. +.+|.||.|+|.++.
T Consensus 154 --~~-~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 154 --ET-LTGRLLVAADGSHSA 170 (395)
T ss_pred --CE-EEeCEEEEecCCChh
Confidence 46 899999999997653
No 145
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.07 E-value=2.1e-09 Score=99.19 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=79.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC------C--CccCC--------C----------CCCceEeecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A--SIWKK--------Y----------SYDRLRLHLAK 60 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~------G--g~w~~--------~----------~y~~~~~~~~~ 60 (325)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. + ..+.. . .+..+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999998741 1 11110 0 01111111111
Q ss_pred CccCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEEEEe
Q 020533 61 QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSG 138 (325)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~a 138 (325)
....++.......... ...+..+...|.+.+...+.. ++++++++.+...+ .....|++. ++ +..+ +++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~-i~a 152 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLA-GDRPYVTFERDG-----ERHR-LDC 152 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecC-CCccEEEEEECC-----eEEE-EEe
Confidence 1111111000000000 123456666677767666654 48888877765422 234556664 33 2247 899
Q ss_pred CeEEEcccCCCCC
Q 020533 139 RFLVVASGETTNP 151 (325)
Q Consensus 139 d~vIiAtG~~~~p 151 (325)
|.||.|.|.+|.-
T Consensus 153 dlvIGADG~~S~V 165 (390)
T TIGR02360 153 DFIAGCDGFHGVS 165 (390)
T ss_pred CEEEECCCCchhh
Confidence 9999999987743
No 146
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.07 E-value=2.1e-09 Score=99.78 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CC--CC---------------------CccCCC------CCCceEe
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL 56 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~--~G---------------------g~w~~~------~y~~~~~ 56 (325)
.+||+||||||+|+++|..|++.|++|+|+|+. +. ++ |.|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999986 21 11 112110 0111111
Q ss_pred ecCCCc--cCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeE
Q 020533 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE 133 (325)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (325)
...... ..+....... .+.....+..+.+.|.+.+.... ...++++++|++++.++ +.+.|++.++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~-~v~v~~~~~v~~i~~~~--~~~~v~~~~g-------~ 153 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQD-NVTLLMPARCQSIAVGE--SEAWLTLDNG-------Q 153 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCC-CeEEEcCCeeEEEEeeC--CeEEEEECCC-------C
Confidence 111100 0011000000 00111335567777777666542 13458999999998765 5577777653 5
Q ss_pred EEEEeCeEEEcccCCCC
Q 020533 134 EYYSGRFLVVASGETTN 150 (325)
Q Consensus 134 ~~~~ad~vIiAtG~~~~ 150 (325)
+ +.+|.||.|+|.+|.
T Consensus 154 ~-~~a~lvIgADG~~S~ 169 (405)
T PRK08850 154 A-LTAKLVVGADGANSW 169 (405)
T ss_pred E-EEeCEEEEeCCCCCh
Confidence 6 899999999997664
No 147
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.06 E-value=2e-10 Score=78.03 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=44.0
Q ss_pred EECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCc
Q 020533 12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQF 62 (325)
Q Consensus 12 IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~ 62 (325)
|||||++||++|..|++.|++|+|+|+++.+||.+....+++..++.....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~ 51 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHY 51 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-S
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEE
Confidence 899999999999999999999999999999999998877777777665443
No 148
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.06 E-value=3.3e-09 Score=97.72 Aligned_cols=133 Identities=11% Similarity=0.141 Sum_probs=79.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--C--CCc--------cCC--------CCCCce-----------Ee
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC--Y--ASI--------WKK--------YSYDRL-----------RL 56 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~--~--Gg~--------w~~--------~~y~~~-----------~~ 56 (325)
+||+||||||+|+++|..|++.|++|+|||+.+. . .|. +.. ..++.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998751 1 110 100 011111 10
Q ss_pred e-cCCCccCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533 57 H-LAKQFCQLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (325)
Q Consensus 57 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (325)
. .......+........ ......+..+...|.+.+...+ ...++++++|++++.++ +.++|+++++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~-~i~i~~~~~v~~~~~~~--~~~~v~~~~g-------~~ 153 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYP-NLTLMCPEKLADLEFSA--EGNRVTLESG-------AE 153 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCC-CeEEECCCceeEEEEcC--CeEEEEECCC-------CE
Confidence 0 0000000110000000 0111234456666666555543 24458999999998765 5577887654 56
Q ss_pred EEEeCeEEEcccCCCCC
Q 020533 135 YYSGRFLVVASGETTNP 151 (325)
Q Consensus 135 ~~~ad~vIiAtG~~~~p 151 (325)
+++|.||.|+|.+|.-
T Consensus 154 -~~~~lvIgADG~~S~v 169 (384)
T PRK08849 154 -IEAKWVIGADGANSQV 169 (384)
T ss_pred -EEeeEEEEecCCCchh
Confidence 8999999999987653
No 149
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.06 E-value=2.8e-09 Score=98.75 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=83.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---C----------------ccCC---CCCC--ceEeecCCCc-
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S----------------IWKK---YSYD--RLRLHLAKQF- 62 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G---g----------------~w~~---~~y~--~~~~~~~~~~- 62 (325)
.+|+|||||++||++|..|++.|++|+|+|+.+.+. . .|.. ..+. .+........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 579999999999999999999999999999987532 1 1100 0000 0111000000
Q ss_pred --cCCCCCCCCC--CCCC--CCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 63 --CQLPHLPFPS--SYPM--FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 63 --~~~~~~~~~~--~~~~--~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.......... .... ...+.++.+.|.+.+.+. ++ .++++++|++++.++ +.+++++.+..++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~- 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTG--NSITATIIRTNSV----ET- 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence 0000000000 0011 246788888888877654 43 459999999997654 5677777544332 56
Q ss_pred EEeCeEEEcccCCCCC
Q 020533 136 YSGRFLVVASGETTNP 151 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~p 151 (325)
+.+|.||.|.|.+|.-
T Consensus 154 ~~adlvIgADG~~S~v 169 (400)
T PRK06475 154 VSAAYLIACDGVWSML 169 (400)
T ss_pred EecCEEEECCCccHhH
Confidence 8999999999988743
No 150
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.06 E-value=2.9e-09 Score=99.11 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=79.3
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCc------cCC--------CCCC--------------ceEeec-
Q 020533 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYD--------------RLRLHL- 58 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~------w~~--------~~y~--------------~~~~~~- 58 (325)
+|+|||||++||++|..|+++| ++|+||||.+.++.. +.. ...+ ......
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998865421 110 0000 000000
Q ss_pred CCCccCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533 59 AKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (325)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (325)
......+.......... ....+.++.+.|.+.+.. ..++++++|++++.++ +.|+|++.++ .+ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~ 147 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-YR 147 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-EE
Confidence 00000000000000111 124567777777665532 2358999999998754 5688888764 46 88
Q ss_pred eCeEEEcccCCCC
Q 020533 138 GRFLVVASGETTN 150 (325)
Q Consensus 138 ad~vIiAtG~~~~ 150 (325)
+|.||.|+|.+|.
T Consensus 148 ad~vVgADG~~S~ 160 (414)
T TIGR03219 148 CDLLIGADGIKSA 160 (414)
T ss_pred eeEEEECCCccHH
Confidence 9999999998764
No 151
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.05 E-value=1.4e-09 Score=100.78 Aligned_cols=168 Identities=23% Similarity=0.270 Sum_probs=102.8
Q ss_pred EEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCC-CCCHHHHHHH
Q 020533 10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH 86 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y 86 (325)
++|||+|++|+.+|..|.+. +.+++++.+...... ..+ +.+..... .....++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY-------YRC--------------PLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC-------CCC--------------ccchHHhcccCCHHHhccc
Confidence 58999999999999998885 457888877764321 000 00000000 0011111111
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~ 166 (325)
.. .....++.. +.+++|.+++... -.|.+.++ + +.+|++++||| ..|..++ + .+
T Consensus 60 ~~-~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g--------~-~~yd~LvlatG--a~~~~~~--~--~~---- 113 (415)
T COG0446 60 PR-FNRATGIDV--RTGTEVTSIDPEN----KVVLLDDG--------E-IEYDYLVLATG--ARPRPPP--I--SD---- 113 (415)
T ss_pred ch-hHHhhCCEE--eeCCEEEEecCCC----CEEEECCC--------c-ccccEEEEcCC--CcccCCC--c--cc----
Confidence 11 113445444 8888999887654 34555553 4 78999999999 5666554 1 11
Q ss_pred CCCccEEecCCCCCCCCC-----CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533 167 TGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (325)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~-----~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~ 227 (325)
.........+.+...+ ..++++|||+|..|+++|..+.+.|.+|+++.+.+ .++++..
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~ 176 (415)
T COG0446 114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLL 176 (415)
T ss_pred --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhh
Confidence 1112222222211111 14899999999999999999999999999999999 5666544
No 152
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.04 E-value=8.4e-10 Score=100.16 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
....++.+++.+.+++.|... +.+++|++++.++ +.|+ |.+.+ .. +.+|.||+|+|.++.
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGHH
T ss_pred ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccce
Confidence 356889999999999998555 9999999999876 7787 88776 56 899999999997653
No 153
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.02 E-value=1e-08 Score=96.22 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=84.3
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccC--------CCC-------CC-c-------------eEee-
Q 020533 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWK--------KYS-------YD-R-------------LRLH- 57 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~--------~~~-------y~-~-------------~~~~- 57 (325)
||+|||+|.+|+++|..++++| .+|+|+||.+..||.-. ... .+ . ...+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999987765321 110 00 0 0000
Q ss_pred --------cCC---Ccc--CCCC----------CCCCCC-C--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEE
Q 020533 58 --------LAK---QFC--QLPH----------LPFPSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111 (325)
Q Consensus 58 --------~~~---~~~--~~~~----------~~~~~~-~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~ 111 (325)
... .++ .+.. ...+.. . .......++.+.|.+.+++.++.. +++++|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeEE
Confidence 000 000 0000 000000 0 011345678889999999988654 99999999988
Q ss_pred cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+++...+.|...+..+ +... +.++.||+|+|.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g---~~~~-~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGK---GIYI-KAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCC---eEEE-EecceEEEecCCCCC
Confidence 6533334455543221 2245 789999999997765
No 154
>PRK05868 hypothetical protein; Validated
Probab=99.00 E-value=9.9e-09 Score=94.12 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=78.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC--c-c--CCC-------------------CCCceEeecCCC--
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--I-W--KKY-------------------SYDRLRLHLAKQ-- 61 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg--~-w--~~~-------------------~y~~~~~~~~~~-- 61 (325)
.||+|||||++|+++|..|++.|++|+|+|+.+.... . . ..+ .+.......+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4899999999999999999999999999999875431 0 0 000 111111111110
Q ss_pred ccCCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533 62 FCQLPH-LPFPSSY--PM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (325)
Q Consensus 62 ~~~~~~-~~~~~~~--~~-~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (325)
...... .+..... +. ...+.++.+.+.+.+ ..+ ..++++++|++++.++ +..+|++.++ .+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~--v~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPS--VEYLFDDSISTLQDDG--DSVRVTFERA-------AA-RE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCC--cEEEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence 000000 0000000 00 112455555544322 223 4469999999997653 5677777664 46 78
Q ss_pred eCeEEEcccCCCCCC
Q 020533 138 GRFLVVASGETTNPF 152 (325)
Q Consensus 138 ad~vIiAtG~~~~p~ 152 (325)
+|.||.|.|.+|.-+
T Consensus 149 adlvIgADG~~S~vR 163 (372)
T PRK05868 149 FDLVIGADGLHSNVR 163 (372)
T ss_pred eCEEEECCCCCchHH
Confidence 999999999877543
No 155
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=1.7e-08 Score=96.22 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
....+...+...+.+.|... +.+++|+++..++ +.|.|++.+.. + +..+ ++++.||+|+|.++.
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~-g--~~~~-i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 153 DDARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD-G--ETRT-VRARALVNAAGPWVT 216 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC-C--CEEE-EEecEEEECCCccHH
Confidence 34555566667778888654 8889999998764 56888877654 2 3367 899999999998753
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.97 E-value=1e-08 Score=72.24 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=64.8
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHHH
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD 88 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~ 88 (325)
+|+|||||+.|+.+|..|.+.|.+|+++++++.+.. .-.+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 589999999999999999999999999999986431 11246788888
Q ss_pred HHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee
Q 020533 89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124 (325)
Q Consensus 89 ~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~ 124 (325)
+..++.++.. ++++.+.+++.+++ + ++|++++
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~~-~-~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDGD-G-VEVTLED 79 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEETT-S-EEEEEET
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeCC-E-EEEEEec
Confidence 8888888655 99999999998762 3 6677765
No 157
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.96 E-value=1.7e-08 Score=96.21 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
...+...+...+.+.|... +.+++|+++..++ +.|.|++.+..++ +..+ +.++.||+|+|.++
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~~g--~~~~-i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEI--LTRTRVVSARREN--GLWHVTLEDTATG--KRYT-VRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEE--EcCcEEEEEEEeC--CEEEEEEEEcCCC--CEEE-EEcCEEEECCCccH
Confidence 3445455566677788654 8889999997754 5688887763322 2257 89999999999875
No 158
>PLN02661 Putative thiazole synthesis
Probab=98.96 E-value=4.4e-09 Score=93.61 Aligned_cols=138 Identities=18% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCC-ccCCCCC-CceEeecCC-CccCCCCCCCC--CCCCCCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYSY-DRLRLHLAK-QFCQLPHLPFP--SSYPMFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg-~w~~~~y-~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~ 80 (325)
.+||+|||||++|+++|+.|++. |++|+|+|++..+|| .|....+ ....+..+. .+..--..++. +.+......
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 57999999999999999999986 899999999988765 6654321 111111100 00000011111 111111133
Q ss_pred HHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCc------EEEEEeecCCCC-ceeEEEEEeCeEEEcccCC
Q 020533 81 AQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNM------WNVKASNLLSPG-REIEEYYSGRFLVVASGET 148 (325)
Q Consensus 81 ~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~------~~v~~~~~~~~~-~~~~~~~~ad~vIiAtG~~ 148 (325)
.++...|.+.+.+ .++ .++.++.+.++..++ +.. |.....+..++. .+... +.++.||+|||+.
T Consensus 172 ~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh~ 243 (357)
T PLN02661 172 ALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCCC
Confidence 4555555554443 454 448888888887654 222 322222221100 02246 8999999999954
No 159
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.96 E-value=3.5e-10 Score=105.49 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=35.4
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCC---CceEee----------cCCCccCCCCCCCCC--C
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY---DRLRLH----------LAKQFCQLPHLPFPS--S 73 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y---~~~~~~----------~~~~~~~~~~~~~~~--~ 73 (325)
||+|||||++|++||..+++.|.+|+|+|+.+.+||......- ...... ....+......+.+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999997654321 111100 000000000000000 0
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 74 ~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
+ ........+...+.+.+.+.++.. ++++.|.++..++ ..-+.|++.+..+. .+ +.|+.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g~----~~-i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSGR----KE-IRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-cccccccccccccc----cc-cccccccccccc
Confidence 0 123445566677788887788776 9999999998864 33455666543321 67 999999999994
No 160
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.95 E-value=3.7e-08 Score=93.89 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 367999999999999999999999999999999988776
No 161
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.95 E-value=9.5e-09 Score=93.97 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=78.4
Q ss_pred eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC--ccCCCCCCc-----------eEeecCCCccCCCCCC--CC
Q 020533 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDR-----------LRLHLAKQFCQLPHLP--FP 71 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg--~w~~~~y~~-----------~~~~~~~~~~~~~~~~--~~ 71 (325)
||+|||||++|+++|..|.+. |++|+++|+.+..+| +|.....+- +...-+.....++... +.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999988776 443211100 0000000000011000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 72 ~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
.. .....+.++.+++.+.+. .. ++++++|.+++. +. |++.++ .+ +.++.||.|.|..+.+
T Consensus 81 ~~-Y~~I~r~~f~~~l~~~l~---~~--i~~~~~V~~v~~----~~--v~l~dg-------~~-~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TA-YRSMTSTRFHEGLLQAFP---EG--VILGRKAVGLDA----DG--VDLAPG-------TR-INARSVIDCRGFKPSA 140 (370)
T ss_pred CC-ceEEEHHHHHHHHHHhhc---cc--EEecCEEEEEeC----CE--EEECCC-------CE-EEeeEEEECCCCCCCc
Confidence 00 123456777787765443 22 578889998832 23 444433 57 8999999999965432
Q ss_pred CCCCCCCcccc
Q 020533 152 FTPDIRGLCSF 162 (325)
Q Consensus 152 ~~p~~~g~~~~ 162 (325)
. ...|...|
T Consensus 141 ~--~~~~~Q~f 149 (370)
T TIGR01789 141 H--LKGGFQVF 149 (370)
T ss_pred c--ccceeeEE
Confidence 2 22466666
No 162
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.94 E-value=1e-08 Score=94.14 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
.....+...+.+.+.+.+... +++++|+++..++ +.|.|.+.+ .. +.+|.||+|+|.++....+
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAEL--LFNEPVTAIEADG--DGVTVTTAD--------GT-YEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEeeC--CeEEEEeCC--------CE-EEeeEEEEecCcchhhhcc
Confidence 344566666666677777554 8899999998754 567777654 35 8899999999987554433
No 163
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.94 E-value=1e-08 Score=94.31 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
....+.+.+.+.++..+... +.+++|.+++.++ +.|.|.+.+ .+ +.+|.||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcchH
Confidence 45677778888888887654 8899999998754 567776543 35 889999999997643
No 164
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.94 E-value=1e-08 Score=94.74 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
....+.+.|.+.+++.|... +++++|.+++..+ +.|.|.+.+ .+ +.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence 45677778888888888654 8999999988754 557776643 36 89999999999765
No 165
>PLN02985 squalene monooxygenase
Probab=98.91 E-value=4e-08 Score=93.57 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=77.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----C---------------ccCC------CCCCceEeecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK 60 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G----g---------------~w~~------~~y~~~~~~~~~ 60 (325)
..+||+|||||++|+++|..|++.|++|+|+||.+... | .|.. ....++......
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 45799999999999999999999999999999975211 1 1110 001111111111
Q ss_pred Cc--cCCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533 61 QF--CQLPHLP--FPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (325)
Q Consensus 61 ~~--~~~~~~~--~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (325)
.. ..++... .+... .....+.++.+.|.+.+...+ ...+.. .+++++..++ .....|++...++ +..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~-~V~i~~-gtvv~li~~~-~~v~gV~~~~~dG---~~~~- 194 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLP-NVRLEE-GTVKSLIEEK-GVIKGVTYKNSAG---EETT- 194 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCC-CeEEEe-eeEEEEEEcC-CEEEEEEEEcCCC---CEEE-
Confidence 10 1111100 00000 013456788888988887653 122344 4566665443 1112344433222 2256
Q ss_pred EEeCeEEEcccCCCC
Q 020533 136 YSGRFLVVASGETTN 150 (325)
Q Consensus 136 ~~ad~vIiAtG~~~~ 150 (325)
+.+|.||.|+|.+|.
T Consensus 195 ~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 ALAPLTVVCDGCYSN 209 (514)
T ss_pred EECCEEEECCCCchH
Confidence 789999999998774
No 166
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.90 E-value=2.5e-08 Score=95.02 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCCCCCceE-------eecC---------CCccCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR-------LHLA---------KQFCQLPHL 68 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~~y~~~~-------~~~~---------~~~~~~~~~ 68 (325)
.++||+|||||++|++||..+++.|.+|+++|++. .+|+.-......+.. ++.. ....++...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999983 555421100000000 0000 000001000
Q ss_pred CC---CCC--CCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533 69 PF---PSS--YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (325)
Q Consensus 69 ~~---~~~--~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (325)
.. |.- ......+..+...+.+.++.. ++. .+.++|.++..++ .....|.+.++ .. +.|+.||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI 150 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV 150 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence 00 000 011234556677777777765 443 4677788876653 22233555443 57 8999999
Q ss_pred EcccCCC
Q 020533 143 VASGETT 149 (325)
Q Consensus 143 iAtG~~~ 149 (325)
+|||.+.
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999654
No 167
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=1.8e-08 Score=87.28 Aligned_cols=145 Identities=20% Similarity=0.335 Sum_probs=97.2
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--C---------------------------ccCCCC-
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S---------------------------IWKKYS- 50 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--g---------------------------~w~~~~- 50 (325)
|.++....+++|||||.-|+++|++|+++|.++.++|+.+-+- | .|+...
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 4556667899999999999999999999999999999876221 1 122110
Q ss_pred CCceEe-------e--------------------------cCCCc-cCCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 020533 51 YDRLRL-------H--------------------------LAKQF-CQLP-HLPFPSSYP-------MFVSRAQFIEHLD 88 (325)
Q Consensus 51 y~~~~~-------~--------------------------~~~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~yl~ 88 (325)
..+..+ . .+... -.|| ..++++++. .+....+-...++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 000000 0 00000 0244 455666554 3456678888899
Q ss_pred HHHHHcCCCceeeeCeEEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCC
Q 020533 89 HYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (325)
Q Consensus 89 ~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~ 155 (325)
..+.+.|... +.+.+|..+...+. .....|.+.++ .. +.++.+|+++|.|....+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcCc
Confidence 9999999766 99999999886543 23455666554 46 99999999999886666663
No 168
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.89 E-value=3.1e-08 Score=97.57 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
.....+.+.+.+.++. ++. ++++++|++++..+ +.|.|.+.++ .. +.++.||+|+|.++..
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLT--IHFGHEVARLERED--DGWQLDFAGG-------TL-ASAPVVVLANGHDAAR 465 (662)
T ss_pred eCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC--CEEEEEECCC-------cE-EECCEEEECCCCCccc
Confidence 3445666777777766 654 48899999998764 6788776543 45 6899999999987643
No 169
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.89 E-value=2.5e-08 Score=95.84 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=33.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
..+||+|||||+.|+++|+.|+++|++|+|+|+++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3589999999999999999999999999999997643
No 170
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.88 E-value=2.4e-08 Score=94.24 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHH----cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 79 SRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~----~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
....+...+.+.+++ .|....++++++|++++..+ ++.|.|++.+ .+ +.||+||+|+|.++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence 445677777777777 66445569999999998763 3568887764 46 899999999998763
No 171
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.87 E-value=2.9e-08 Score=92.55 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=79.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-----------C----C-C--------------------
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-----------S----Y-D-------------------- 52 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-----------~----y-~-------------------- 52 (325)
||+|||+|.+||+||..++++|.+|+|+||.+..||.-... . . +
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 79999999999999999999999999999999877632210 0 0 0
Q ss_pred -------------------ceEeec-CCC---ccCCCCCCCC----CCC-----CCCCCHHHHHHHHHHHHHHcCCCcee
Q 020533 53 -------------------RLRLHL-AKQ---FCQLPHLPFP----SSY-----PMFVSRAQFIEHLDHYVSHFNIGPSI 100 (325)
Q Consensus 53 -------------------~~~~~~-~~~---~~~~~~~~~~----~~~-----~~~~~~~~~~~yl~~~a~~~~l~~~i 100 (325)
++.... ... ...+...... ... ........+.+.+.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence 000000 000 0000000000 000 1122567888999999999984 45
Q ss_pred eeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 101 RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 101 ~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+++++++++..++ ...--|...+...+ +... +.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence 9999999998864 22233445532222 4467 899999999997664
No 172
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.87 E-value=5.5e-08 Score=91.57 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G 43 (325)
...+||+|||||++|+++|..|++. +.+|+|+||.+.+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 3457999999999999999999998 89999999954444
No 173
>PRK07121 hypothetical protein; Validated
Probab=98.87 E-value=9.4e-08 Score=90.98 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=35.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
.+||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999987766
No 174
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.87 E-value=1.3e-07 Score=89.44 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=80.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--CCCccCCCCCCceEeecC------------CC----------
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASIWKKYSYDRLRLHLA------------KQ---------- 61 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~--~Gg~w~~~~y~~~~~~~~------------~~---------- 61 (325)
..+||+|||+|++|+++|..+++.|.+|+|+||.+. .||.-.... ++..... ..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTR--NLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCC--ceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 457999999999999999999999999999999874 455211100 0000000 00
Q ss_pred ---------------------cc--CCCCCCCCC------CCCC--CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEE
Q 020533 62 ---------------------FC--QLPHLPFPS------SYPM--FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (325)
Q Consensus 62 ---------------------~~--~~~~~~~~~------~~~~--~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~ 110 (325)
+. .+....... .... ......+...|.+.+++.++.. +++++|+++.
T Consensus 81 ~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~ 158 (466)
T PRK08274 81 GRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALE 158 (466)
T ss_pred CCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEE
Confidence 00 000000000 0000 0113567778888888888654 9999999998
Q ss_pred EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.++ ...+.|......+ +... +.++.||+|||.+.
T Consensus 159 ~~~-g~v~gv~~~~~~g---~~~~-i~a~~VIlAtGg~~ 192 (466)
T PRK08274 159 LDD-GRFVGARAGSAAG---GAER-IRAKAVVLAAGGFE 192 (466)
T ss_pred ecC-CeEEEEEEEccCC---ceEE-EECCEEEECCCCCC
Confidence 753 2223344432211 2256 89999999999754
No 175
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.86 E-value=8.7e-08 Score=89.11 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
...+...+.+.+.+.|... +++++|++++.++ +.|.+.+.+.... +..+ +++|+||+|+|.++.
T Consensus 196 ~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~--~~~~-i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAEH--PSRT-LEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCCC--ccce-EecCEEEECCCcChH
Confidence 3456666777788888654 8899999998754 5677766543210 0146 899999999998753
No 176
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.84 E-value=4.2e-08 Score=94.94 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--CC-CccCC------C-------------------CC-CceEe
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YA-SIWKK------Y-------------------SY-DRLRL 56 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~--~G-g~w~~------~-------------------~y-~~~~~ 56 (325)
.+.+|+|||||++||++|..|++.|++|+||||.+. .+ |.+.. + .+ ...+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 457999999999999999999999999999999752 11 11110 0 00 00000
Q ss_pred ----ec-CC-CccCCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC
Q 020533 57 ----HL-AK-QFCQLPHLPFPS--SYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL 126 (325)
Q Consensus 57 ----~~-~~-~~~~~~~~~~~~--~~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~ 126 (325)
+. .. ....+....... ..+ ....+.++.+.|.+. .+. ..++++++|++++.++ +.++|++.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~-~~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGE-DVIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCC-CEEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 00 00 001111111000 011 124677777777443 332 2357889999998754 6677777664
Q ss_pred CCCceeEEEEEeCeEEEcccCCCC
Q 020533 127 SPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 127 ~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
.+ +.+|.||.|.|.+|.
T Consensus 233 ------~t-i~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 ------QR-YEGDLLVGADGIWSK 249 (668)
T ss_pred ------CE-EEcCEEEECCCCCcH
Confidence 46 889999999998773
No 177
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.83 E-value=3.2e-08 Score=88.00 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=88.5
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCCccCCC----------CCCc-----------
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY----------SYDR----------- 53 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~------g~~v~v~e~~~~~Gg~w~~~----------~y~~----------- 53 (325)
|......+||+||||||+||++|.+|.+. .++|+|+|+...+||.--.. ..+.
T Consensus 70 ~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 70 MERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred chhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 34445678999999999999999999764 46899999999999832221 0111
Q ss_pred -----eEeecCCCccCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC-
Q 020533 54 -----LRLHLAKQFCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL- 126 (325)
Q Consensus 54 -----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~- 126 (325)
+.+-+.+.-...+.. |+...-....+-.++..||-+.|+.+|+++ .-+..+..+-++++....-|.+.+..
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeeccccc
Confidence 111111111111111 111122223567899999999999999876 65655666666654444444443321
Q ss_pred ---CCCc----eeEEEEEeCeEEEcccCC
Q 020533 127 ---SPGR----EIEEYYSGRFLVVASGET 148 (325)
Q Consensus 127 ---~~~~----~~~~~~~ad~vIiAtG~~ 148 (325)
+..+ .-.+ ++++.-|.|-|.+
T Consensus 228 ~k~G~pKd~FerGme-~hak~TifAEGc~ 255 (621)
T KOG2415|consen 228 SKDGAPKDTFERGME-FHAKVTIFAEGCH 255 (621)
T ss_pred cCCCCccccccccce-ecceeEEEecccc
Confidence 0000 1146 8899999999964
No 178
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=92.13 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
...++...+...+.+.|... +++++|+.++...+ +.+.+.+.+++ .+ ++|++||.|.|.++.
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~------~~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 151 DPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE------ET-LEAKFVINAAGLYAD 212 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc------EE-EEeeEEEECCchhHH
Confidence 34566666777777777655 99999999998762 34555555542 55 899999999997653
No 179
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.81 E-value=1.2e-07 Score=88.61 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=87.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------CC-----------------------Cce
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------SY-----------------------DRL 54 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------~y-----------------------~~~ 54 (325)
..+||+|||||+.|+.+|+.++.+|++|+++|+++-..|+-... +| |.+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 67899999999999999999999999999999999766643321 00 000
Q ss_pred EeecCCCccCCCCCC--CCCC---------------------------------CC---------------CCCCHHHHH
Q 020533 55 RLHLAKQFCQLPHLP--FPSS---------------------------------YP---------------MFVSRAQFI 84 (325)
Q Consensus 55 ~~~~~~~~~~~~~~~--~~~~---------------------------------~~---------------~~~~~~~~~ 84 (325)
.-..+ .-++.++ .+.+ .| .......+.
T Consensus 91 v~p~~---~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv 167 (532)
T COG0578 91 VEPLP---FLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLV 167 (532)
T ss_pred cccCc---CeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHH
Confidence 00000 0000000 0000 00 011223444
Q ss_pred HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.-...-|.+.|-.. ...++|+++.++. +.|-|+.++..++ +..+ ++++.||.|||.|.
T Consensus 168 ~~~a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~tg--~~~~-ira~~VVNAaGpW~ 225 (532)
T COG0578 168 AANARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRETG--ETYE-IRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCCC--cEEE-EEcCEEEECCCccH
Confidence 44455566777655 7888999999876 4899999987766 5578 99999999999764
No 180
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.80 E-value=2.9e-07 Score=87.01 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------R--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999999875320 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++.++ +.+.+++...+++ .+ +.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGGQ----GE-VEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEEeEC--CCcCCC
Confidence 788888878655 9999999997653 4455655432221 57 89999999999 556554
No 181
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.80 E-value=8.2e-08 Score=89.21 Aligned_cols=35 Identities=40% Similarity=0.552 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~ 40 (325)
..+||+|||||+.|+++|++|++. |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 468999999999999999999995 85 899999976
No 182
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=2.3e-07 Score=87.85 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=75.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.. . ...++.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-------------------------------T--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999875310 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++..+.++...+...++ +..+ +.+|.||+|+| ..|+.+
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence 777788888655 9999999997521122222223332 2257 89999999999 556544
No 183
>PRK08275 putative oxidoreductase; Provisional
Probab=98.79 E-value=2.3e-07 Score=89.49 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC-CCccCCC--CCCc-eE--eecCCCc----------
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQF---------- 62 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~-Gg~w~~~--~y~~-~~--~~~~~~~---------- 62 (325)
|......+||+|||+|.+|++||..+++. |.+|+|+||.+.. +|.+... .... +. .+.+..+
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence 44444568999999999999999999987 6899999998753 2221100 0000 00 0000000
Q ss_pred -----------------------cCCCCCCCCCC---------CC----CCCCHHHHHHHHHHHHHHcCCCceeeeCeEE
Q 020533 63 -----------------------CQLPHLPFPSS---------YP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSV 106 (325)
Q Consensus 63 -----------------------~~~~~~~~~~~---------~~----~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V 106 (325)
+..++...... .. .......+.+.|.+.+++.++.. .+++.+
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v 160 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA 160 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence 00000000000 00 01245678888888888877554 999999
Q ss_pred EEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 107 ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 107 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+++..+++....-+...+...+ +... +.++.||+|||.++.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 161 TRLLTDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR 201 (554)
T ss_pred EEEEEcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence 9997652222222333222121 2356 899999999997653
No 184
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.79 E-value=8.1e-08 Score=90.74 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
....+...+.+.+.+.|.. ++++++|++++.++ ++.|.+++.+..++ +..+ +.+++||+|+|.++.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcchH
Confidence 4466777777777777754 49999999998753 35688876543222 1246 899999999998763
No 185
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.79 E-value=4.4e-08 Score=92.42 Aligned_cols=60 Identities=7% Similarity=0.040 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~ 152 (325)
....+...|.+.+++.|... +.++.|++++.. +.|.|++.+ .+ +.+|.||+|+|.++...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~~---~~~~v~t~~--------g~-v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEEG---QPAVVRTPD--------GQ-VTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEeeC---CceEEEeCC--------cE-EECCEEEEccccccccc
Confidence 44566677777788888654 899999998742 457776654 35 89999999999876543
No 186
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.78 E-value=1.2e-07 Score=90.37 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=78.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc--cCCC----CCCceE--eecCC---------CccCCCCC--
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKKY----SYDRLR--LHLAK---------QFCQLPHL-- 68 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~--w~~~----~y~~~~--~~~~~---------~~~~~~~~-- 68 (325)
+||+|||||++|+.+|..+++.|.+|+++|++...+|. ++.. .+..+. ++... ...++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 68999999999999999999999999999987533221 1100 000000 00000 00001110
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533 69 ---PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS 145 (325)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAt 145 (325)
+..........+..+..++.+.+++.+... .+..+|+.+..+++.....|.+.++ .. +.|+.||+||
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILAT 150 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIITT 150 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEcc
Confidence 100001123466777888888888874222 4566777776543234455666553 46 8999999999
Q ss_pred cCCC
Q 020533 146 GETT 149 (325)
Q Consensus 146 G~~~ 149 (325)
|.+.
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9763
No 187
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.78 E-value=1.5e-07 Score=86.55 Aligned_cols=98 Identities=11% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .. ...++.++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~-~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SL-MPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hh-CCHHHHHH
Confidence 46899999999999999999999999999999875320 00 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
+.+.+++.++.. ++++++.+++.++ +.+.+.+.++ .+ +.+|.||+|+|..
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G~~ 238 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcCCC
Confidence 777888888654 8899999987654 5677776553 57 8999999999943
No 188
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=1.2e-07 Score=91.28 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC-CCCccCC--CCCCce--------------------Eee
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK--YSYDRL--------------------RLH 57 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~-~Gg~w~~--~~y~~~--------------------~~~ 57 (325)
|......+||+|||+|.+||+||..+ +.|.+|+|+||.+. .||.-.. ..+... ..+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d 79 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND 79 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 55555678999999999999999999 89999999999864 4442111 000000 000
Q ss_pred ----------cC---CCccCCCCCCCC-----------CCCCCC--------CCHHHHHHHHHHHHHHcCCCceeeeCeE
Q 020533 58 ----------LA---KQFCQLPHLPFP-----------SSYPMF--------VSRAQFIEHLDHYVSHFNIGPSIRYQRS 105 (325)
Q Consensus 58 ----------~~---~~~~~~~~~~~~-----------~~~~~~--------~~~~~~~~yl~~~a~~~~l~~~i~~~~~ 105 (325)
.+ ..+..+ ..++. .....+ .+..++...|.+.+++.++. +++++.
T Consensus 80 ~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~ 156 (543)
T PRK06263 80 PKLVEILVKEAPKRLKDLEKF-GALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVM 156 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeE
Confidence 00 000000 00010 000001 13567888888888777654 499999
Q ss_pred EEEEEEcCCCC-cEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 106 VESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 106 V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
++++..++ .+ ..-+...+...+ +... +.++.||+|||.+..
T Consensus 157 v~~Li~~~-~~~v~Gv~~~~~~~g--~~~~-i~AkaVIlATGG~~~ 198 (543)
T PRK06263 157 AIKLIVDE-NREVIGAIFLDLRNG--EIFP-IYAKATILATGGAGQ 198 (543)
T ss_pred eeeeEEeC-CcEEEEEEEEECCCC--cEEE-EEcCcEEECCCCCCC
Confidence 99987654 23 223333331111 2356 899999999997653
No 189
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.77 E-value=2.8e-07 Score=87.12 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|++|+.+|..|.+.|.+|+++|+.+.+.. . ...++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-------------------------------G--EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-------------------------------C--CCHHHHHH
Confidence 36899999999999999999999999999999875320 0 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+.+++.++.. +++++|.+++.++ +.+.+...++ +..+ +.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGG-----ETET-LTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCC-----cEEE-EEeCEEEEecC--CcccCC
Confidence 778888888554 9999999997654 4555555432 1146 89999999999 555544
No 190
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=2.6e-07 Score=89.58 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=34.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 457999999999999999999999999999999764433
No 191
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.77 E-value=6.8e-08 Score=88.39 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=31.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999763
No 192
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.77 E-value=1e-07 Score=92.91 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=35.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||||+.|.++|+.|+++|++|+|+|+++..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999874434
No 193
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=3.2e-07 Score=88.93 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=37.8
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
|+-....+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 45445568999999999999999999999999999999865543
No 194
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.74 E-value=6.9e-08 Score=87.80 Aligned_cols=64 Identities=20% Similarity=0.403 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 82 QFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 82 ~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
.+.+-+.+++.+. +. .++++++|+++++.. ++.|.|++.+..++ +..+ +.+++|+++.|..+.+
T Consensus 182 ~LTr~l~~~l~~~~~~--~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGF--ELHLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCc--EEEecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHhHH
Confidence 4444444455544 54 459999999999875 67799999876554 3477 9999999999976643
No 195
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=3.6e-07 Score=88.76 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
..+||+|||+|.+||+||..+++.|.+|+|+||....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 45899999999999999999999999999999986443
No 196
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.73 E-value=8.3e-08 Score=86.84 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=72.4
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEE-ecCCCCCCccCCCCCCceEee-----------cCCCc--------cC----
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLH-----------LAKQF--------CQ---- 64 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~-e~~~~~Gg~w~~~~y~~~~~~-----------~~~~~--------~~---- 64 (325)
||+|||||.||+.||..+++.|.+|+++ .+.+.+|..-- .+++.-. ....+ .+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~C---npsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSC---NPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS---SSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccc---hhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 7999999999999999999999999999 45555543211 1111100 00000 00
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533 65 -LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (325)
Q Consensus 65 -~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi 143 (325)
.+.-|-.........+..+.+++++.++...-.. .++.+|+++..+. ...+-|.+.++ .. +.+|.||+
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vVl 146 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVVL 146 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEEE
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEEE
Confidence 0000000001123577889999999988854222 4578899998764 33455666554 67 99999999
Q ss_pred cccC
Q 020533 144 ASGE 147 (325)
Q Consensus 144 AtG~ 147 (325)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9995
No 197
>PRK12839 hypothetical protein; Provisional
Probab=98.73 E-value=6.6e-07 Score=86.40 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=39.5
Q ss_pred CC-CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 1 MK-EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 1 M~-~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
|+ +++..+||+|||+|.+|+++|..+.+.|.+|+|+|+...+||.
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 44 3445789999999999999999999999999999999888774
No 198
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.72 E-value=4.9e-07 Score=88.03 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999876554
No 199
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.72 E-value=2.6e-07 Score=85.95 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=82.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
+.+++|||||+.|+..|..+++.|.+|+|+|+.+++- | ...+++.++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------p--------~~D~ei~~~ 219 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------P--------GEDPEISKE 219 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------C--------cCCHHHHHH
Confidence 5689999999999999999999999999999999742 0 123488899
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~ 156 (325)
+.+..++.++. ++.++++..++..+ +...++++++.. .. +.+|.|++|+| ..|+...+
T Consensus 220 ~~~~l~~~gv~--i~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 220 LTKQLEKGGVK--ILLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHhCCeE--EEccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCCC
Confidence 99988886644 49999999998765 336677766532 36 88999999999 66776543
No 200
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.72 E-value=5.2e-07 Score=87.77 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY 42 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~ 42 (325)
..+||+|||+|.+||+||..+++. |.+|+|+||.+..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 357999999999999999999998 9999999998743
No 201
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.72 E-value=4.4e-07 Score=88.50 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 357999999999999999999999999999999875554
No 202
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=5.8e-07 Score=84.96 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=78.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-------------------------------G--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999875320 0 11366777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+.+++.++.. +++++|.+++.++ +.+.+.+.++. +..+ +.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence 888888888554 9999999998654 45666655431 2256 89999999999 555543
No 203
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.71 E-value=5.6e-08 Score=86.40 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC--------CccCCCCCCceEeecCCCccCCCCC--------
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA--------SIWKKYSYDRLRLHLAKQFCQLPHL-------- 68 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G--------g~w~~~~y~~~~~~~~~~~~~~~~~-------- 68 (325)
+...+|||+|.+..+++...... +.++.++...+.+- ..|.+..-... ..+.|..+
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~------k~lrfkqwsGkeRsif 251 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSA------KKLRFKQWSGKERSIF 251 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChh------hheeecccCCccceeE
Confidence 45689999999988887776654 56788886655422 13332111000 00000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
-.|+ ..|.+.+++-. +..-|+.. ..+.+|+.++..+ -.|+++++ .+ +.+|.++||||
T Consensus 252 fepd--~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d----~~V~LnDG-------~~-I~YdkcLIATG-- 308 (659)
T KOG1346|consen 252 FEPD--GFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED----KKVILNDG-------TT-IGYDKCLIATG-- 308 (659)
T ss_pred ecCC--cceeChhHCcc-----cccCceEE--EeccceEEeeccc----CeEEecCC-------cE-eehhheeeecC--
Confidence 0011 13445544433 23335443 6777888886544 35777776 67 99999999999
Q ss_pred CCCCCCC-CCCc-cccccCCCCCccEEecC-CCCCC-CCC-CCCeEEEECcCCCHHHHHHHHhhc----cCeEEEEEe
Q 020533 149 TNPFTPD-IRGL-CSFCSSATGTGEVIHST-QYKNG-KPY-GGKNVLVVGSGNSGMEIALDLANH----AAKTSLVVR 217 (325)
Q Consensus 149 ~~p~~p~-~~g~-~~~~~~~~~~g~~~~~~-~~~~~-~~~-~~~~v~VvG~G~s~~e~a~~l~~~----~~~v~~~~r 217 (325)
..|...+ +... ++. ..+-.++|.. +++.. ... .-++|.|||+|..|-|+|..|.+. |.+|+.+..
T Consensus 309 ~~Pk~l~~~~~A~~ev----k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~ 382 (659)
T KOG1346|consen 309 VRPKKLQVFEEASEEV----KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFE 382 (659)
T ss_pred cCcccchhhhhcCHHh----hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeec
Confidence 5565432 2111 011 0011222221 11110 001 136899999999999999999875 445654443
No 204
>PRK07208 hypothetical protein; Provisional
Probab=98.71 E-value=4.4e-08 Score=93.01 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=44.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeec
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL 58 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~ 58 (325)
..+||+|||||++||++|..|.++|++|+|+|+++++||.+....+.+..++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~ 55 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDI 55 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEcc
Confidence 34689999999999999999999999999999999999987765555444433
No 205
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=7.1e-07 Score=84.22 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-------------------------------~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-------------------------------G--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-------------------------------c--ccHHHHHH
Confidence 35899999999999999999999999999999875320 0 12357777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++.++ ..+.+.. ++ +..+ +.+|.||+|+| ..|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g-----~~~~-i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG-----SIQE-VNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC-----ceEE-EEeCEEEEecC--CccCCC
Confidence 888888888655 9999999987543 3333332 11 1257 89999999999 556554
No 206
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.70 E-value=2.4e-07 Score=89.00 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=82.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc--------cCCCCC-C-------ce------Eee------
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--------WKKYSY-D-------RL------RLH------ 57 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~--------w~~~~y-~-------~~------~~~------ 57 (325)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|. +..... + .+ .++
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3589999999999999999999999999999998866541 111000 0 00 000
Q ss_pred ----cC-------CCccCCCCC-------------CCCCCC--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEE
Q 020533 58 ----LA-------KQFCQLPHL-------------PFPSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111 (325)
Q Consensus 58 ----~~-------~~~~~~~~~-------------~~~~~~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~ 111 (325)
.+ ..-..|... ..+... ..-.....+.+.|.+.+++.++. +++++.|+++..
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~ 172 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEE
Confidence 00 000001100 000000 00124567888898888888854 599999999976
Q ss_pred cCCCCcEEEEEeec---CCCCceeEEEEEeCeEEEcccCCCC
Q 020533 112 DEATNMWNVKASNL---LSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 112 ~~~~~~~~v~~~~~---~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+++....-+...+. ..+ .... +.++.||+|||.++.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence 54222223333311 111 1246 899999999998664
No 207
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.69 E-value=2e-07 Score=88.31 Aligned_cols=65 Identities=14% Similarity=0.308 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
..+.+.|.+.+++.+ ...++++++|++++..+ ++.|.+++.+..++ +..+ +.+++||+|+|.++.
T Consensus 183 ~~l~~aL~~~a~~~G-gv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G--~~~~-i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQG-NFELQLGHEVRDIKRND-DGSWTVTVKDLKTG--EKRT-VRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCC-CeEEEeCCEEEEEEECC-CCCEEEEEEEcCCC--ceEE-EEcCEEEECCCcchH
Confidence 356666667777665 12459999999998754 34598877642222 1146 899999999998763
No 208
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=6.3e-07 Score=86.92 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
+.||+|||+|.+||+||..+++.|.+|+|+||.+..||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 46999999999999999999999999999999876543
No 209
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=6.2e-07 Score=87.66 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
.+||+|||+|.+||+||..+++.|.+|+|+|+...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999876543
No 210
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.68 E-value=2.5e-08 Score=94.51 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=45.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA 59 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~ 59 (325)
.+||+|||||++||++|..|+++|++|+|+||++.+||..+...+.+.+.+..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G 55 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTG 55 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccC
Confidence 47999999999999999999999999999999999999766655555554443
No 211
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=1.5e-06 Score=82.24 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK 47 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~ 47 (325)
.+.+++|||||++||++|..|.+. |.+|+|+|+++.+||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 357899999999999999999996 679999999999999543
No 212
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=3e-08 Score=93.34 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=37.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
.+++|+|||||+|||+||++|.+.|++|+|+|.++++||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457999999999999999999999999999999999998
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=7.7e-08 Score=67.74 Aligned_cols=38 Identities=34% Similarity=0.501 Sum_probs=33.5
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE 226 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~ 226 (325)
+++|||+|.+|+|+|..|++.+.+||++.|++ +++|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGF 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhc
Confidence 68999999999999999999999999999999 343433
No 214
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.65 E-value=2.9e-07 Score=86.02 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+||+||..+. .|.+|+|+||.+..||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 3579999999999999999984 7999999999887665
No 215
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.65 E-value=4.3e-07 Score=85.23 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=75.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+++.++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-------------------------------R--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-------------------------------C--CCHHHHHH
Confidence 45899999999999999999999999999999875320 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+.+++.++.. +++++|++++.++ +...+... + .+ +.+|.||+|+| ..|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~~-g-------~~-i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVTE-D-------ET-YRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEEC-C-------eE-EEcCEEEEeeC--CCCCcc
Confidence 778888888654 8999999997643 34444322 1 56 89999999999 556543
No 216
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.65 E-value=6.6e-07 Score=85.04 Aligned_cols=134 Identities=17% Similarity=0.139 Sum_probs=79.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc--CCCCCCce--------------------Eee-------
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW--KKYSYDRL--------------------RLH------- 57 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w--~~~~y~~~--------------------~~~------- 57 (325)
.+||+|||+|.+||+||..+++.|. |+|+||.+..+|.- ....+... .++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4699999999999999999999997 99999997655421 11000000 000
Q ss_pred ---cC-------CCccCCCCCC-----C---C-CCC-C----CCCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEc
Q 020533 58 ---LA-------KQFCQLPHLP-----F---P-SSY-P----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYD 112 (325)
Q Consensus 58 ---~~-------~~~~~~~~~~-----~---~-~~~-~----~~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~ 112 (325)
.+ ..-..|.... . . ... + ...+...+.+.|.+.+++ .++. +++++.++++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence 00 0000010000 0 0 000 0 012456788888888876 4654 5999999998764
Q ss_pred CCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 113 EATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 113 ~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+ +... +...+.. .... +.++.||+|||.++.
T Consensus 159 ~--g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T--GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK 190 (488)
T ss_pred C--CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence 3 3332 4444421 2256 899999999998764
No 217
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=8.7e-07 Score=85.59 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC--CCCC-----------Cc--------e-----Eee---
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK--KYSY-----------DR--------L-----RLH--- 57 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~--~~~y-----------~~--------~-----~~~--- 57 (325)
.+||+|||+|.+||+||..+++.|.+|+|+||.+..+|... ...+ +. + ..+
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 57999999999999999999999999999999875444211 0000 00 0 000
Q ss_pred -------cC---CCc--cCCCCCCCCCC-----------CC-----CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEE
Q 020533 58 -------LA---KQF--CQLPHLPFPSS-----------YP-----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESA 109 (325)
Q Consensus 58 -------~~---~~~--~~~~~~~~~~~-----------~~-----~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i 109 (325)
.+ ..+ +..++...++. .+ .-.....+...|.+.+...++. +++++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence 00 000 00000000000 00 0113556777777777766654 5999999999
Q ss_pred EEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 110 SYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 110 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
..++ +.. -|...+..++ +... +.++.||+|||.++
T Consensus 163 i~~~--g~v~Gv~~~~~~~g--~~~~-i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDN--KKVVGIVAMQMKTL--TPFF-FKTKAVVLATGGMG 198 (566)
T ss_pred EEEC--CEEEEEEEEECCCC--eEEE-EEeCeEEECCCccc
Confidence 7653 433 2444443222 3356 89999999999765
No 218
>PRK06370 mercuric reductase; Validated
Probab=98.63 E-value=7e-07 Score=84.39 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... ...++.++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~---------------------------------~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR---------------------------------EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc---------------------------------cCHHHHHH
Confidence 468999999999999999999999999999998754200 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+.+++.++.. +++++|.+++.++ +...+.+...+++ .+ +.+|.||+|+| ..|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGGA----PE-ITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEECcC--CCcCCC
Confidence 888888888654 9999999997654 3445554432211 57 89999999999 556543
No 219
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.63 E-value=4.1e-07 Score=85.91 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.6
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
+||+|||||.+||++|..+++.|.+|+|+||.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999998643
No 220
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.63 E-value=1.9e-06 Score=81.69 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=77.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------------------A--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999875320 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +.+++|.+++.++ +...+...++++ +... +.+|.|++|+| ..|+.+
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~-i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDADG---EAQT-LEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCCC---ceeE-EEcCEEEEccC--CccCCC
Confidence 777777777554 9999999997654 345555544322 2256 89999999999 566654
No 221
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.63 E-value=6.2e-07 Score=86.91 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|++|+++|..++++|.+|+|+||.+..||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 468999999999999999999999999999999987776
No 222
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.62 E-value=3.5e-07 Score=84.70 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.+. ...+++.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999998764211 012356678
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
+.+.+++.++.. +++++|++++. + +.+.+.+.++ .+ +.+|.||+|+|.
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G~ 239 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCCC
Confidence 888888888654 99999998865 2 3455665543 56 899999999994
No 223
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.62 E-value=4.1e-07 Score=84.75 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=31.3
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
||+|||||+.|+++|.+|++.|.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999753
No 224
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.62 E-value=4.5e-07 Score=82.47 Aligned_cols=134 Identities=17% Similarity=0.300 Sum_probs=95.1
Q ss_pred CeEEEECCChHHHHHHHHHHhc-------------CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~-------------g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
.+|+|+|||+.|..+|..|.+. .++|+++|+.+.+- +
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p-------- 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------P-------- 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------c--------
Confidence 4799999999999999998753 13899999998753 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 75 ~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
...+++.+|.++..++.|+.. +.++.|++++.+. |++.+++ .+ +.++.+|.|+|....|..-
T Consensus 206 ---~~~~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 206 ---MFPPKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK 267 (405)
T ss_pred ---CCCHHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence 112477889999999999776 9999999998765 6666642 36 8999999999976666555
Q ss_pred CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCC
Q 020533 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNS 197 (325)
Q Consensus 155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s 197 (325)
.+-|++.- ..|+++......-. ...+|-++|....
T Consensus 268 ~l~~~e~d-----r~Grl~V~~~L~~~---~~~~IFa~GD~A~ 302 (405)
T COG1252 268 DLSGLETD-----RRGRLVVNPTLQVP---GHPDIFAAGDCAA 302 (405)
T ss_pred hcChhhhc-----cCCCEEeCCCcccC---CCCCeEEEecccc
Confidence 54234421 04666655444321 1245888876543
No 225
>PLN02815 L-aspartate oxidase
Probab=98.61 E-value=8.7e-07 Score=85.71 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
.+||+|||+|.+||+||..+++.| +|+|+||.+..||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 579999999999999999999999 9999999886665
No 226
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.61 E-value=2.7e-07 Score=85.04 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
.++||+|||||++|+++|+.|++.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 45799999999999999999999999999999887543
No 227
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=1.6e-06 Score=82.06 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.. . ...++.++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------------------------------N--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999998875320 0 01356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++.++ +...+.+...++ +..+ +.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~-i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDG---KAQE-LEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCC---CeEE-EEeCEEEECcC--cccCCC
Confidence 888888888655 9999999997643 445555542111 2257 89999999999 555543
No 228
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.60 E-value=1.3e-06 Score=84.53 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=33.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
||+|||+|.+|++||..+++.|.+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999875543
No 229
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.59 E-value=7.5e-07 Score=84.18 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=77.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------cCCHHHHHH
Confidence 46899999999999999999999999999999875420 012356777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.+++.++.. +++++|++++.++ +.+.+++.++ .+ +.+|.|++|+| ..|+.
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 274 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNT 274 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCccc
Confidence 888888877554 8999999997654 4566665432 46 89999999999 45554
No 230
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=79.50 Aligned_cols=155 Identities=18% Similarity=0.329 Sum_probs=91.4
Q ss_pred eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
+.+|||||++|.++|.+|+.. ..++.++-.++.+-.+ ..-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHH
Confidence 368999999999999999986 4478888766532111 011233444
Q ss_pred HHHHHHHcCCCce------eeeCeEEEEE-EEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc
Q 020533 87 LDHYVSHFNIGPS------IRYQRSVESA-SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL 159 (325)
Q Consensus 87 l~~~a~~~~l~~~------i~~~~~V~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~ 159 (325)
++. |++... -.|.+-+.++ .++. ..-.++++++ .. +.|++|++|+| ..|.+- ..|.
T Consensus 49 lek----fdv~eq~~~elg~~f~~~~~~v~~~~s--~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq-~E~~ 111 (334)
T KOG2755|consen 49 LEK----FDVKEQNCHELGPDFRRFLNDVVTWDS--SEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQ-VEGI 111 (334)
T ss_pred HHh----cCccccchhhhcccHHHHHHhhhhhcc--ccceEEecCC-------ce-eeEEEEEEecC--CCccee-ecCC
Confidence 433 222110 0111111111 1222 2234666665 56 88999999999 566432 2222
Q ss_pred cccccCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 160 CSFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
...++-..+..+. ...+.|+|+|+|.|-+++|.+.++... +|+|....+ |+..
T Consensus 112 ---------n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~Isa 169 (334)
T KOG2755|consen 112 ---------NPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISA 169 (334)
T ss_pred ---------CceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhh
Confidence 2234443333332 223579999999999999999888644 788888877 4443
No 231
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.59 E-value=1.7e-06 Score=83.75 Aligned_cols=39 Identities=21% Similarity=0.507 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
.++||+|||+|.+||++|..+++.|.+|+|+||.+..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 368999999999999999999999999999999987776
No 232
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1.4e-06 Score=85.17 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=34.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
.+||+|||+|.+||+||..+++.|.+|+|+||.+..+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5799999999999999999999999999999987554
No 233
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.58 E-value=2.9e-06 Score=82.29 Aligned_cols=41 Identities=17% Similarity=0.529 Sum_probs=37.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
...+||+|||+|++|+++|..+.++|.+|+|+|+++..||.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 34689999999999999999999999999999999877763
No 234
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=1.5e-06 Score=82.11 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=76.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. . ...++.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------------------~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------------------G--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------------------C--CCHHHHHH
Confidence 46899999999999999999999999999999875320 0 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++.. +++++|.+++.++ +.+.+.+....++ +... +.+|.|++|+| ..|+.
T Consensus 221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Ccccc
Confidence 777888888655 9999999997643 3455555421111 1257 89999999999 45554
No 235
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.57 E-value=3.1e-06 Score=80.97 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=37.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
|.+-...+||+|||+| +|+++|..+++.|.+|+|+||.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5555557899999999 999999999999999999999886554
No 236
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=9.8e-07 Score=83.11 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=77.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------------G--FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998875310 0 11356777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+.+++.++.. +++++|.+++.++ ++.+.+.+.++ .+ +.+|.||+|+| ..|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence 888888888654 9999999998653 23356665543 56 89999999999 555544
No 237
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.56 E-value=1.7e-06 Score=83.21 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
+...+||+|||+|.+||++|..+++. .+|+|+||....||
T Consensus 5 ~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 5 PEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 34568999999999999999999886 89999999886665
No 238
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.56 E-value=8.7e-08 Score=89.89 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
..+.++.++|.+.|.+.|+.. +.+ +|+.+..+++..-..|+++++ .+ +.+|++|-|+|..
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~--~~g-~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~~ 210 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEV--IEG-TVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGRR 210 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EET--EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGGG
T ss_pred EeHHHHHHHHHHHHhcCCCEE--EeC-EEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCcc
Confidence 478999999999999999764 444 688888776222234555553 67 9999999999953
No 239
>PTZ00367 squalene epoxidase; Provisional
Probab=98.56 E-value=8.8e-07 Score=85.08 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35799999999999999999999999999999975
No 240
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=8.9e-07 Score=85.77 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg 44 (325)
.+||+|||+|.+||+||..+++.| .+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 469999999999999999999874 79999999875453
No 241
>PRK07233 hypothetical protein; Provisional
Probab=98.55 E-value=2.4e-07 Score=86.73 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=38.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~ 49 (325)
+|+|||||++||++|+.|.+.|++|+|+|+++++||.+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~ 41 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASF 41 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeee
Confidence 58999999999999999999999999999999999976543
No 242
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=2.6e-06 Score=82.66 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+||+||..+++. .+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 357999999999999999999976 89999999865443
No 243
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.55 E-value=4e-06 Score=80.84 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=36.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w 46 (325)
..+||+|||+| +|+++|..+++.|.+|+|+||.+.+||+.
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 46899999999 89999999999999999999998888843
No 244
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=4.5e-06 Score=80.56 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=39.3
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
|......+||+|||+|++|+++|..++++|.+|+|+||.+.+||
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 45555678999999999999999999999999999999987765
No 245
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.54 E-value=2.4e-06 Score=88.92 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
..+||+|||+|.+|++||..+++.|.+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 3589999999999999999999999999999999888774
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.53 E-value=2.9e-07 Score=91.91 Aligned_cols=113 Identities=13% Similarity=0.324 Sum_probs=72.0
Q ss_pred eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC---C-Cc-cCCCC---------------------CCceEeecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-SI-WKKYS---------------------YDRLRLHLAK 60 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~---G-g~-w~~~~---------------------y~~~~~~~~~ 60 (325)
+|+||||||+||++|..|++. |++|+|+|+++.. | |. ...+. +....+....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 8999999998853 2 11 00110 0011100000
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCe
Q 020533 61 QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF 140 (325)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~ 140 (325)
.. . ......+ .-..+.++.+.|.+.+.+.++. ++++++|++++. .. ..+|.
T Consensus 82 ~~--~--~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~---------------------~~-~~~D~ 132 (765)
T PRK08255 82 RR--I--RSGGHGF-AGIGRKRLLNILQARCEELGVK--LVFETEVPDDQA---------------------LA-ADADL 132 (765)
T ss_pred EE--E--EECCeeE-ecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhh---------------------hh-cCCCE
Confidence 00 0 0000001 1257899999999999998854 489988765421 22 46899
Q ss_pred EEEcccCCCC
Q 020533 141 LVVASGETTN 150 (325)
Q Consensus 141 vIiAtG~~~~ 150 (325)
||.|+|.+|.
T Consensus 133 VVgADG~~S~ 142 (765)
T PRK08255 133 VIASDGLNSR 142 (765)
T ss_pred EEEcCCCCHH
Confidence 9999997764
No 247
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.53 E-value=2.5e-06 Score=75.39 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=112.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
+.+++|||||..||.++.--.+.|-+|+++|-.+.+|+... .++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHHH
Confidence 46899999999999999999999999999999998875421 277888
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC----CCcc-c
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI----RGLC-S 161 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~----~g~~-~ 161 (325)
++....+.++.. .++++|.+++.+. ++...+++++..++ +..+ ++||.+++|+| .+|..-.+ -|++ .
T Consensus 258 ~qr~L~kQgikF--~l~tkv~~a~~~~-dg~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GLgle~iGi~~D 329 (506)
T KOG1335|consen 258 FQRVLQKQGIKF--KLGTKVTSATRNG-DGPVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGLGLEKIGIELD 329 (506)
T ss_pred HHHHHHhcCcee--EeccEEEEeeccC-CCceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCCChhhcccccc
Confidence 888888888776 9999999999886 34778888877665 4477 99999999999 56654432 1211 2
Q ss_pred cccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhcc
Q 020533 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209 (325)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~ 209 (325)
+ .++++...++.. +--++-.||.-.-|--+|....+.|
T Consensus 330 ~------r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 330 K------RGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred c------ccceeccccccc----cCCceEEecccCCcchhhhhhhhhc
Confidence 3 555555443332 1236788888777776666665555
No 248
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.52 E-value=1.5e-06 Score=84.13 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=34.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg 44 (325)
..+||+|||+|.+||+||..+++. |.+|+|+||....+|
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 357999999999999999999987 479999999876554
No 249
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.52 E-value=3.9e-06 Score=79.32 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHH
Confidence 46899999999999999999999999999999875421 012356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++. +. +++++++.+++.++. ....++..++ +..+ +.+|.|++|+| ..|+..
T Consensus 216 ~~~~l~~~-I~--i~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~-i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 216 AQKILSKE-FK--IKLGAKVTSVEKSGD-EKVEELEKGG-----KTET-IEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHhhc-cE--EEcCCEEEEEEEcCC-ceEEEEEcCC-----ceEE-EEeCEEEEccC--CccCCC
Confidence 77777665 54 489999999976532 2333332222 1257 89999999999 566654
No 250
>PRK07846 mycothione reductase; Reviewed
Probab=98.51 E-value=3.4e-06 Score=79.41 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-------------------------------H--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999999875310 0 11245555
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..+ .+ .++++++++.+++.++ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 213 l~~l~~-~~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELAS-KR--WDVRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHHh-cC--eEEEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCcc
Confidence 555443 34 4558999999997653 3455555432 56 89999999999 555544
No 251
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.51 E-value=1.5e-06 Score=81.66 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------------------G--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------------------c--cCHHHHHH
Confidence 45899999999999999999999999999998875310 0 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.+++.++.. +++++|.+++..+ +...+++.++ .+ +.+|.||+|+| ..|+.
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence 778888888654 9999999997643 3455665432 56 89999999999 45554
No 252
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.51 E-value=4.2e-06 Score=81.00 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg 44 (325)
.+||+|||+|.+||+||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 579999999886655
No 253
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=3.1e-06 Score=82.08 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=34.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g---~~v~v~e~~~~~Gg 44 (325)
.+||+|||+|.+||+||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 579999999999999999999998 89999999886554
No 254
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=4.6e-07 Score=78.28 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=60.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCC--ceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
+|++|||||++|+.+|..|+++|.+|.|+||++++||.+....-+ ++.++. +..+ -.+.+...+.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk-----------YGpH-IFHT~~~~Vwd 69 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK-----------YGPH-IFHTDNKRVWD 69 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee-----------ccCc-eeecCchHHHH
Confidence 699999999999999999999999999999999999976544221 222211 1100 12345678999
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEE
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESA 109 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i 109 (325)
|+.++.+-. .+.++|..+
T Consensus 70 yv~~F~e~~------~Y~hrVla~ 87 (374)
T COG0562 70 YVNQFTEFN------PYQHRVLAL 87 (374)
T ss_pred HHhhhhhhh------hhccceeEE
Confidence 999988754 455666444
No 255
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.49 E-value=3.9e-06 Score=81.60 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=30.8
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
|+|||+|.+||+||..+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998844
No 256
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.49 E-value=1.2e-06 Score=84.25 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=34.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
+..+||+|||+|.+|++||..+. .|.+|+|+||.+..||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 34689999999999999999996 4999999999886665
No 257
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.49 E-value=4e-07 Score=86.05 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=41.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccCCCCCCceEe
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRL 56 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~~~~y~~~~~ 56 (325)
++||+|||||++||++|+.|.++ |++|+|+|+++++||..+.....+..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~ 55 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLI 55 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEE
Confidence 36899999999999999999998 999999999999999655433334333
No 258
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.48 E-value=1.3e-06 Score=78.28 Aligned_cols=36 Identities=39% Similarity=0.511 Sum_probs=32.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
.+|+|||||++||++|..|.++|++++|+|++..+-
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 579999999999999999999999999999876543
No 259
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.48 E-value=1.8e-07 Score=88.10 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=36.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKK 48 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~ 48 (325)
++|+|||||++||+||+.|.+.| ++|+|+|+++++||..+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 37999999999999999999987 899999999999985443
No 260
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.48 E-value=2e-06 Score=82.17 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
.+||+|||+|.+||+||..+++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 5799999999999999999976 899999999886555
No 261
>PLN02676 polyamine oxidase
Probab=98.48 E-value=2.7e-07 Score=87.44 Aligned_cols=50 Identities=32% Similarity=0.454 Sum_probs=43.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceE
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLR 55 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~ 55 (325)
..+||+|||||++||++|+.|.++|. +|+|+|+++++||.+....+++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~ 75 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVS 75 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeE
Confidence 46799999999999999999999998 699999999999987766555443
No 262
>PLN02507 glutathione reductase
Probab=98.47 E-value=2.4e-06 Score=81.35 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+-. . ...++.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-------------------------------G--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-------------------------------c--cCHHHHHH
Confidence 35899999999999999999999999999998874210 0 12367777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++.++ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence 888888888654 9999999997643 4455554432 56 89999999999 455543
No 263
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.47 E-value=1.8e-06 Score=81.17 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... . ..+++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------~--~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------S--FDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------h--cCHHHHHH
Confidence 468999999999999999999999999999987743100 0 12467888
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
+.+.+++.++.. +++++|.+++.+ .+.+.+...+ .+ +.+|.||+|+|.
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~--~~~~~v~~~~--------~~-i~~d~vi~a~G~ 244 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGE--DKVEGVVTDK--------GE-YEADVVIVATGV 244 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecC--CcEEEEEeCC--------CE-EEcCEEEECcCC
Confidence 888888888654 899999998643 2333444332 46 899999999994
No 264
>PLN02576 protoporphyrinogen oxidase
Probab=98.46 E-value=3.2e-07 Score=87.50 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCCccC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWK 47 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg~w~ 47 (325)
..+||+|||||++||++|+.|.+. |++|+|+|+++++||...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 457999999999999999999999 999999999999998543
No 265
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=3.5e-06 Score=79.79 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=75.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. . ...++.++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-------------------------------~--~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-------------------------------A--ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999886420 0 11356666
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++. + .++++++|.+++..+ +...+++.+..+ +..+ +.+|.||+|+| ..|+..
T Consensus 221 ~~~~l~~~-v--~i~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-F--NIMLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-e--EEEcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence 66666554 3 458999999987654 445565544322 1257 89999999999 556543
No 266
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.46 E-value=3e-06 Score=79.69 Aligned_cols=103 Identities=15% Similarity=0.036 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.+.. . -.+++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------S--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999999876420 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +.+++|++++.+. .+...+++.++ + .. +.+|.|++|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG-----K-SI-DDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC-----c-EE-EEcCEEEEeeC--CCcCcc
Confidence 777777778655 9999999997643 23345555432 1 46 89999999999 555543
No 267
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.46 E-value=2.5e-06 Score=80.66 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|..|+.+|..|++.|.+|+++++.+.+.. . ...++.++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHH
Confidence 35899999999999999999999999999998875421 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +.++++.+++.++ +.+.+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence 888888888655 8999999997654 4455665442 56 89999999999 555543
No 268
>PRK14727 putative mercuric reductase; Provisional
Probab=98.45 E-value=3.6e-06 Score=79.87 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++...+. ...+++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHH
Confidence 3689999999999999999999999999998753110 012356778
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.+++.++.. +++++|.+++.++ +.+.+...+ .+ +.+|.||+|+| ..|+.
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G--~~pn~ 285 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTG--RHANT 285 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccC--CCCCc
Confidence 888888888655 8899999997654 455555432 45 78999999999 44543
No 269
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.45 E-value=3.2e-07 Score=84.65 Aligned_cols=78 Identities=14% Similarity=0.356 Sum_probs=55.6
Q ss_pred eEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
+|+|||||++||++|++|.+++ .+++|||+.+++||.-+.-...+..++.... .|... .+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~--------------~f~~~---~~~ 64 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPH--------------HFLAR---KEE 64 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechh--------------heecc---hHH
Confidence 6999999999999999999999 8999999999999986655444444433211 22222 145
Q ss_pred HHHHHHHcCCCceeeeC
Q 020533 87 LDHYVSHFNIGPSIRYQ 103 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~ 103 (325)
..+.+.+.|+...+..+
T Consensus 65 ~l~li~eLGled~l~~~ 81 (444)
T COG1232 65 ILDLIKELGLEDKLLWN 81 (444)
T ss_pred HHHHHHHhCcHHhhccC
Confidence 55666777877644433
No 270
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.45 E-value=3.3e-07 Score=87.29 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=37.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
.||+|||||++||++|..|+++|++|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 5899999999999999999999999999999999998443
No 271
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.44 E-value=3.2e-06 Score=79.39 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-------------------------------RE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-------------------------------Cc--CHHHHHH
Confidence 35899999999999999999999999999999875320 00 1356777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.+++.++.. +++++|.+++.++ +.+.+...+ .+ +.+|.|++|+| ..|+.
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence 888888888665 8999999997653 445554332 35 78999999999 45554
No 272
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.44 E-value=8.1e-06 Score=78.78 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=36.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
.++||+|||+|.+|+++|..+++.|.+|+|+|+.+..||+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3689999999999999999999999999999999877764
No 273
>PLN02268 probable polyamine oxidase
Probab=98.44 E-value=2.6e-07 Score=86.65 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=36.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
.+|+|||||+|||+||+.|.+.|++|+|+|+++++||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 3799999999999999999999999999999999999543
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=98.43 E-value=9.8e-06 Score=76.73 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. ...+++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------------------QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------------------CCCHHHHHH
Confidence 3689999999999999999999999999998643110 012356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++.. ++++++.+++.++ +.+.+.+.+ .+ +.+|.||+|+| ..|+.
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~ 275 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNT 275 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCc
Confidence 788888888655 8999999987653 444444322 46 89999999999 45554
No 275
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.43 E-value=5.7e-07 Score=85.01 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=36.9
Q ss_pred CeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCCccCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY 49 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~------g~~v~v~e~~~~~Gg~w~~~ 49 (325)
++|+|||||++||++|+.|.+. |.+|+|+|+++++||..+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~ 49 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV 49 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence 4799999999999999999986 37999999999999965543
No 276
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=1e-05 Score=78.56 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=37.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w 46 (325)
++||+|||+|.+|+++|..++++|.+|+|+|+.+.+||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999998888754
No 277
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.42 E-value=8.1e-06 Score=80.12 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
.+||+|||+|.+||+||..+++.|.+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 5799999999999999999999999999999877543
No 278
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.40 E-value=4e-06 Score=78.44 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=73.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+.. +. ...++.++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHH
Confidence 36899999999999999999999999999998875310 00 11356778
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.+++.++.. +++++|.+++.++ .. +...++ .+ +.+|.||+|+| ..|+.
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~---~~-v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE---RV-KVFTSG-------GV-YQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC---CE-EEEcCC-------CE-EEeCEEEECCC--ccCCH
Confidence 888888888665 8999999987542 22 344332 56 89999999999 44543
No 279
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.39 E-value=2.5e-06 Score=79.99 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+... ..+++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------cCHHHHHH
Confidence 358999999999999999999999999999998754210 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++.. +++++|.+++. . .+++.++ .. +.+|.|++|+| ..|+.
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g-------~~-~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG-------KV-EHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence 788888888654 89999998852 1 3555443 46 88999999999 45543
No 280
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.39 E-value=5.9e-06 Score=76.58 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=76.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 87 (325)
.+++|||+|+.|+.+|..|++.|++|+++|+.+.+++.-. . +++.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~------------------------------~--~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL------------------------------D--PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh------------------------------h--HHHHHHH
Confidence 6899999999999999999999999999999998764310 0 4778889
Q ss_pred HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
.+..+.+++.. ++++++.+++......... +..... .. +.+|.+++++|.
T Consensus 185 ~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g~ 235 (415)
T COG0446 185 AELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPGE 235 (415)
T ss_pred HHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeecc
Confidence 99999998554 8999999998764211111 233332 56 899999999994
No 281
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.39 E-value=4.1e-06 Score=78.86 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------H--LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999999875320 0 11245555
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..+ .+ ..++++++|.+++.++ +...+++.++ .+ +.+|.|++|+| ..|+.
T Consensus 216 l~~~~~-~g--I~i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~ 267 (452)
T TIGR03452 216 FTEIAK-KK--WDIRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNG 267 (452)
T ss_pred HHHHHh-cC--CEEEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCC
Confidence 655443 35 4458999999997654 4455655432 46 89999999999 55554
No 282
>PRK13748 putative mercuric reductase; Provisional
Probab=98.38 E-value=4.9e-06 Score=80.64 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=74.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF--------------------------------R--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc--------------------------------c--cCHHHHHH
Confidence 4689999999999999999999999999999753210 0 12356778
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++.++ +.+.+...+ .+ +.+|.|++|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence 888888888665 8999999987653 445554432 35 89999999999 556543
No 283
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.38 E-value=4.4e-07 Score=82.39 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=37.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKK 48 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~ 48 (325)
...+|||||||.|||+||.+|.+.|+ +++|+|..+++||.-+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 34689999999999999999998876 89999999999995554
No 284
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.38 E-value=4.2e-07 Score=86.81 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=35.6
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999999544
No 285
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.36 E-value=9e-06 Score=77.15 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=74.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 87 (325)
.+++|||+|+.|+.+|..|++.|.+|+++++. .+. +. ...++.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------~~--~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------------------RG--FDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------------------cc--cCHHHHHHH
Confidence 57999999999999999999999999999874 211 00 123677788
Q ss_pred HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
.+..++.++.. ++++.+.+++..+ +...++..++... .+ +.+|.|++|+| ..|+.
T Consensus 227 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~~----~~-i~~D~vl~a~G--~~pn~ 281 (484)
T TIGR01438 227 GEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTNG----IE-EEYDTVLLAIG--RDACT 281 (484)
T ss_pred HHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCcc----eE-EEeCEEEEEec--CCcCC
Confidence 88888888655 8999888887653 3444555443211 47 89999999999 45554
No 286
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.36 E-value=5.6e-07 Score=85.73 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=37.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~ 48 (325)
+||+|||||++||++|..|+++|++|+|+||++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999985444
No 287
>PLN02568 polyamine oxidase
Probab=98.35 E-value=6.5e-07 Score=85.62 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-----CCeEEEecCCCCCCccCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWKK 48 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g-----~~v~v~e~~~~~Gg~w~~ 48 (325)
.+||+|||||++||++|+.|.+.| ++|+|+|+++++||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 468999999999999999999887 899999999999997654
No 288
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.34 E-value=1.2e-06 Score=79.70 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=37.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
..+++|||||++||.||..|++.|+++.++|+++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 357999999999999999999999999999999999986
No 289
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.34 E-value=4.8e-06 Score=83.72 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+-. ..-..+..+.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~--------------------------------~~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA--------------------------------EQLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh--------------------------------hhcCHHHHHH
Confidence 35799999999999999999999999999998875310 0012356678
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++.. ++++.+.++..+.......+.+.++ .+ +.+|.||+|+| ..|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccCc
Confidence 888888888665 9999999987543223344555543 56 89999999999 44543
No 290
>PTZ00058 glutathione reductase; Provisional
Probab=98.33 E-value=7.8e-06 Score=78.56 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=76.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-------------------------------~--~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-------------------------------K--FDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-------------------------------c--CCHHHHHH
Confidence 46899999999999999999999999999999875320 0 11356677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+..++.++.. +++++|.+++.++ .+...+...++ + .+ +.+|.|++|+| ..|+..
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~-~~~v~v~~~~~--~----~~-i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVK-EKNLTIYLSDG--R----KY-EHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecC-CCcEEEEECCC--C----EE-EECCEEEECcC--CCCCcc
Confidence 777788888655 9999999997643 22344443321 1 57 89999999999 455543
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=1.5e-06 Score=80.27 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC----------CCCCCccCCCCC---C---ce-EeecCCCccCCCC--
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE----------NCYASIWKKYSY---D---RL-RLHLAKQFCQLPH-- 67 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~----------~~~Gg~w~~~~y---~---~~-~~~~~~~~~~~~~-- 67 (325)
.+||+|||||.+|+.||...++.|.++.++--+ +.+||.-..... + ++ .........+|..
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 489999999999999999999999999888654 344443221100 0 00 0000111111111
Q ss_pred ---CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533 68 ---LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (325)
Q Consensus 68 ---~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA 144 (325)
-|--...+.-.....+.+++++..+...--. .+...|.++..++....+-|.+..+ .. +.|+.||++
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~--l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~aVVlT 153 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH--LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKAVVLT 153 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce--ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCEEEEe
Confidence 1111111222344455566666666543222 5666777776654222456666665 67 999999999
Q ss_pred ccCC
Q 020533 145 SGET 148 (325)
Q Consensus 145 tG~~ 148 (325)
||.+
T Consensus 154 TGTF 157 (621)
T COG0445 154 TGTF 157 (621)
T ss_pred eccc
Confidence 9965
No 292
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.33 E-value=7.9e-06 Score=77.46 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=74.4
Q ss_pred CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
..+++|||+|+.|+.+|..+.. .|.+|+|+|+.+.+.. . ..+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------------------------------~--~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------------------------------G--FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------------------------------c--cCHHH
Confidence 4689999999999999976654 4899999999886420 0 11367
Q ss_pred HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
.+.+.+..++.++.. ++++++.+++.++ ++...+.+.++ .+ +.+|.|++|+| ..|+.
T Consensus 234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG-------KT-LDVDVVMMAIG--RVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCc
Confidence 788888888888654 9999999997653 23344555432 46 89999999999 55554
No 293
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.33 E-value=5.1e-06 Score=71.94 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=82.4
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--CCCce--------Ee-ecCCCc---------------
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYDRL--------RL-HLAKQF--------------- 62 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~y~~~--------~~-~~~~~~--------------- 62 (325)
.|+|||+|.+||+++..+...|-.|+++|++..+||.--.. ...+. .+ +.|..+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 59999999999999999999988899999999999843210 00000 00 000000
Q ss_pred ---------------------------cCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHH----cCCCceeeeCeEEEE
Q 020533 63 ---------------------------CQLPHLPFP---SSYPMFVSRAQFIEHLDHYVSH----FNIGPSIRYQRSVES 108 (325)
Q Consensus 63 ---------------------------~~~~~~~~~---~~~~~~~~~~~~~~yl~~~a~~----~~l~~~i~~~~~V~~ 108 (325)
..+..+..| ......|+.-++...|....++ ..-...|..+++|+.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 000001111 1112344555666655544443 332345689999999
Q ss_pred EEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533 109 ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (325)
Q Consensus 109 i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~ 150 (325)
+.++. ..-.-|++.+..+ +... +.++.||+|||.++.
T Consensus 171 il~n~-gkVsgVeymd~sg---ek~~-~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNN-GKVSGVEYMDASG---EKSK-IIGDAVVLATGGFGY 207 (477)
T ss_pred eecCC-CeEEEEEEEcCCC---Cccc-eecCceEEecCCcCc
Confidence 98543 3445566665443 3356 789999999998764
No 294
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.32 E-value=9.6e-07 Score=80.40 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=37.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~ 48 (325)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 68999999999999999999999999999999999995443
No 295
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.31 E-value=2.5e-05 Score=76.34 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. ....++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~---------------------------------~~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP---------------------------------LLDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc---------------------------------cCCHHHHHH
Confidence 35899999999999999999999999999999886421 012356667
Q ss_pred HHHHH-HHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC---C-----ceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP---G-----REIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 87 l~~~a-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~---~-----~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
+.+.. ++.++. ++.++.|.+++..+......+...+..++ + .+..+ +.+|.|++|+| ..|+..
T Consensus 359 l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 359 FERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTN 430 (659)
T ss_pred HHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCc
Confidence 76654 456654 49999999997654222244443321100 0 01137 89999999999 556543
No 296
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.30 E-value=2.1e-05 Score=76.32 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHH----hcCCCeEEEecCCC
Q 020533 9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC 41 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~----~~g~~v~v~e~~~~ 41 (325)
||+|||+|.+||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 297
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.29 E-value=2.2e-05 Score=79.99 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+||+|||+|.+||++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999874
No 298
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.28 E-value=1.3e-05 Score=76.34 Aligned_cols=99 Identities=17% Similarity=0.027 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 87 (325)
.+++|||+|+.|+.+|..|++.|.+|+++++...+. . ...++.+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~--~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G--FDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c--CCHHHHHHH
Confidence 589999999999999999999999999998642110 0 112566778
Q ss_pred HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
.+..++.++.. +.++.+.+++..+ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 229 ~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 229 VEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence 88888888654 8999888887643 3345555433 46 78999999999 555543
No 299
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.3e-06 Score=80.66 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=38.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC---ccCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---IWKK 48 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg---~w~~ 48 (325)
++|+|+|||.+||++|+.|+++|++|+|+|+++.+|| .|+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 4799999999999999999999999999999999998 5654
No 300
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.28 E-value=2.6e-06 Score=78.45 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G 43 (325)
.+|+|||||++|+.+|..|++.|++|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999877643
No 301
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.28 E-value=1.2e-05 Score=77.02 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=36.2
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
+..++||+|||+|.+||.||..+++.|.+|+|+||....+|
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 34578999999999999999999999999999999875443
No 302
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.27 E-value=1.2e-06 Score=79.54 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=40.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
|..+....||+|||||.+||++|..|.+.|++|+|+|.++++||
T Consensus 1 ~~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 1 MTLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 44456678999999999999999999999999999999999887
No 303
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.27 E-value=1.7e-05 Score=74.27 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
...+.+.|.+.+++.++.. +++++|+++..+++.+ +.+-....... .. +.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g-~v~gv~~~~~~----~~-i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDG-AHDGPLTTVGT----HR-ITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCC-eEEEEEEcCCc----EE-EEcCEEEEcCCCcc
Confidence 4567888888899888655 9999999997653123 33322211111 56 89999999999654
No 304
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.26 E-value=6.7e-06 Score=82.46 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=74.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+-.. .-..+..+.
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~--------------------------------~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK--------------------------------QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh--------------------------------hcCHHHHHH
Confidence 358999999999999999999999999999987753100 011245667
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++.. ++++.++++..+. ....|++.++ .+ +.+|.||+|+| ..|+.
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence 777788888665 9999888886432 3344565553 56 89999999999 44543
No 305
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.25 E-value=1.2e-05 Score=76.87 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
..+||+|||+|.+||+||..++ +.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999996 569999999885
No 306
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.22 E-value=1.5e-05 Score=70.72 Aligned_cols=161 Identities=20% Similarity=0.190 Sum_probs=86.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-----------CCCCccCCC------CC--------CceEeecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----------CYASIWKKY------SY--------DRLRLHLAK 60 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-----------~~Gg~w~~~------~y--------~~~~~~~~~ 60 (325)
...||+|||||.+|.+.|..|++.|.+|.|+||.- .+||...-. +. .+..+.-..
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g 123 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG 123 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCC
Confidence 35799999999999999999999999999999863 334321100 00 011111010
Q ss_pred --CccCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533 61 --QFCQLPHLPFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (325)
Q Consensus 61 --~~~~~~~~~~~~~~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (325)
....++..+++.+.. .| ....+.+.|++.+....-.. ..+.+|.++-.++ .--.-|++++..++ ..+ .
T Consensus 124 k~v~~pyP~~~f~~d~~GrsF-hnGRFvq~lR~ka~slpNV~--~eeGtV~sLlee~-gvvkGV~yk~k~ge---e~~-~ 195 (509)
T KOG1298|consen 124 KEVDLPYPLKNFPSDPSGRSF-HNGRFVQRLRKKAASLPNVR--LEEGTVKSLLEEE-GVVKGVTYKNKEGE---EVE-A 195 (509)
T ss_pred ceeeccCCCcCCCCCccccee-eccHHHHHHHHHHhcCCCeE--EeeeeHHHHHhcc-CeEEeEEEecCCCc---eEE-E
Confidence 111222222222211 22 23456666777666542111 3444566654433 11123555554442 266 7
Q ss_pred EeCeEEEcccCCCCCCC----CCCC-CccccccCCCCCccEEecCCCCC
Q 020533 137 SGRFLVVASGETTNPFT----PDIR-GLCSFCSSATGTGEVIHSTQYKN 180 (325)
Q Consensus 137 ~ad~vIiAtG~~~~p~~----p~~~-g~~~~~~~~~~~g~~~~~~~~~~ 180 (325)
.|-.-|+|.|.+|+-+. |.++ =...| -|-++..++...
T Consensus 196 ~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~f------VG~vl~N~~l~~ 238 (509)
T KOG1298|consen 196 FAPLTVVCDGCFSNLRRSLCDPKVEEVPSYF------VGLVLKNCRLPA 238 (509)
T ss_pred ecceEEEecchhHHHHHHhcCCcccccchhe------eeeeecCCCCCC
Confidence 88999999998874221 1233 12345 566666555543
No 307
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.22 E-value=2.8e-05 Score=72.62 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred CeEEEECCChHHHHHHHHHHh--------------cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~--------------~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
.+|+|||+|+.|+.+|..|.. .+.+|+++++.+.+..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~----------------------------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG----------------------------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence 389999999999999999875 3688999998875320
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 74 ~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
. -.+++.+++.+..++.++.. +++++|.+++.+ .|.++++ .+ +.+|.+|+|+|..
T Consensus 225 --~--~~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~------~v~~~~g-------~~-i~~d~vi~~~G~~ 279 (424)
T PTZ00318 225 --S--FDQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK------EVVLKDG-------EV-IPTGLVVWSTGVG 279 (424)
T ss_pred --c--CCHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC------EEEECCC-------CE-EEccEEEEccCCC
Confidence 0 11356778888888888665 889999988632 2555543 56 8999999999953
No 308
>PRK10262 thioredoxin reductase; Provisional
Probab=98.18 E-value=2.8e-05 Score=69.88 Aligned_cols=105 Identities=23% Similarity=0.294 Sum_probs=72.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4689999999999999999999999999999886421 01134455
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++. +.+++.+++++.++ .+.-.|++.+...++ +..+ +.+|.||+|+| ..|+.
T Consensus 191 ~~~~l~~~gV~--i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 191 LMDKVENGNII--LHTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNT 250 (321)
T ss_pred HHhhccCCCeE--EEeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccCh
Confidence 56666666654 48899999987542 122235554432110 2257 89999999999 45543
No 309
>PLN02546 glutathione reductase
Probab=98.18 E-value=2.5e-05 Score=75.17 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=73.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... ...++.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~---------------------------------~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG---------------------------------FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc---------------------------------cCHHHHHH
Confidence 468999999999999999999999999999988753210 12366677
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+..++.++.. +.++++.+++..+ ++...+...++ .. ..+|.|++|+| ..|+.
T Consensus 299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt 352 (558)
T PLN02546 299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNT 352 (558)
T ss_pred HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCC
Confidence 888888888655 8999999987543 23334433221 33 45899999999 45554
No 310
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.17 E-value=2.2e-06 Score=79.91 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=40.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~ 48 (325)
+.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 4589999999999999999999999999999999999998774
No 311
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.16 E-value=2.4e-06 Score=80.52 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=35.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
+|+|||||++||++|..|.++|++|+|+|+++.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999999984
No 312
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.14 E-value=3.9e-05 Score=65.60 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=34.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcC------CCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g------~~v~v~e~~~~~Gg 44 (325)
..++|+|+|||+.|.++|+.|.+++ ..++|||+..-.||
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 4578999999999999999999987 68999999876554
No 313
>PLN02529 lysine-specific histone demethylase 1
Probab=98.13 E-value=3.6e-06 Score=82.71 Aligned_cols=42 Identities=36% Similarity=0.328 Sum_probs=38.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
..++|+|||||++||++|..|.+.|++|+|+|+++++||..+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 457999999999999999999999999999999998888543
No 314
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.10 E-value=5.7e-05 Score=66.87 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+. .. ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~----~~ 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AE----KI 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cC----HH
Confidence 4689999999999999999999999999999875320 00 12
Q ss_pred HHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 87 l~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
+.+.+++. ++. +++++++.+++.++ ....+++.+...+ +..+ +.+|.+|+|+|.
T Consensus 182 ~~~~l~~~~gv~--~~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~ 236 (300)
T TIGR01292 182 LLDRLRKNPNIE--FLWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIGH 236 (300)
T ss_pred HHHHHHhCCCeE--EEeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeCC
Confidence 33334444 654 48899999987543 2223444432211 2267 899999999993
No 315
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.10 E-value=4.8e-05 Score=72.91 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=68.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|+.|+.+|..|+..+.+|+++++.+.+. . ...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHH
Confidence 4689999999999999999999999999999776421 0 122
Q ss_pred HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.+++ .++. +++++.+.++..++ .....|++.+..++ +... +.+|.|++|+| ..|+.
T Consensus 393 l~~~l~~~~gV~--i~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~ 452 (515)
T TIGR03140 393 LQDKLKSLPNVD--ILTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNT 452 (515)
T ss_pred HHHHHhcCCCCE--EEECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCc
Confidence 3344443 4644 49999998886542 12223665543222 2257 89999999999 55554
No 316
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.05 E-value=4.6e-06 Score=72.95 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
|..+....+|+|||+|++||+||..|.++ .+|++||.+.++||.-+
T Consensus 2 ~~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 2 MNQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 44455667999999999999999999875 69999999999998544
No 317
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.01 E-value=4.1e-05 Score=69.18 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=66.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCce--EeecCCCccCCCCCCCCCC--------
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFPSS-------- 73 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~--~~~~~~~~~~~~~~~~~~~-------- 73 (325)
..++|+|||||.++..++..|.+.+. +|+++-|+..+--. .+... .+-.|...-.|. ..|+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~--~l~~~~R~~~l~~ 262 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFY--SLPDEERRELLRE 262 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHH--TS-HHHHHHHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhh--cCCHHHHHHHHHH
Confidence 45789999999999999999999875 78899887642100 00000 000000000000 00000
Q ss_pred CC--CC--CCHHHH---HH--HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533 74 YP--MF--VSRAQF---IE--HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (325)
Q Consensus 74 ~~--~~--~~~~~~---~~--yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA 144 (325)
.. .+ .+.+-+ .+ |-+.+..+- ..+++.+++|++++..+ ++.|.+++++...+ +..+ +.+|.||+|
T Consensus 263 ~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~--~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilA 336 (341)
T PF13434_consen 263 QRHTNYGGIDPDLLEAIYDRLYEQRVSGRG--RLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILA 336 (341)
T ss_dssp TGGGTSSEB-HHHHHHHHHHHHHHHHHT-----SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE-
T ss_pred hHhhcCCCCCHHHHHHHHHHHHHHHhcCCC--CeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEc
Confidence 00 00 111111 11 112222222 35568899999999886 45899999986654 4477 899999999
Q ss_pred ccC
Q 020533 145 SGE 147 (325)
Q Consensus 145 tG~ 147 (325)
||.
T Consensus 337 TGy 339 (341)
T PF13434_consen 337 TGY 339 (341)
T ss_dssp --E
T ss_pred CCc
Confidence 994
No 318
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.01 E-value=1.5e-05 Score=73.15 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987654
No 319
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.01 E-value=6.5e-05 Score=65.73 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=36.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCC---------CCCCccCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN---------CYASIWKK 48 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~---------~~Gg~w~~ 48 (325)
..+||+|||+|-+|.+.|..|.++ |++|+|+|+++ .+||++..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 367999999999999999999764 79999999987 56776654
No 320
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.00 E-value=7.2e-06 Score=77.63 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=34.7
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
+|+|||||++||++|..|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999999998
No 321
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.00 E-value=1e-05 Score=80.00 Aligned_cols=42 Identities=31% Similarity=0.339 Sum_probs=38.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
...+|+|||||++||++|+.|.+.|++|+|+|+++++||...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 357899999999999999999999999999999999998543
No 322
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.96 E-value=9e-05 Score=71.07 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
..+|+|||+|.+|+.+|..|+..+.+|+++++.+.+. . ..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHH
Confidence 4689999999999999999999999999999876421 0 023
Q ss_pred HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.... .++ .+++++.+.++..++ +.. .+++.+..++ +..+ +.+|.|++|+| ..|+.
T Consensus 392 l~~~l~~~~gI--~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 392 LQDKLRSLPNV--TIITNAQTTEVTGDG--DKVTGLTYKDRTTG--EEHH-LELEGVFVQIG--LVPNT 451 (517)
T ss_pred HHHHHhcCCCc--EEEECcEEEEEEcCC--CcEEEEEEEECCCC--cEEE-EEcCEEEEeEC--CccCc
Confidence 3333333 354 459999999987542 322 3555543322 3357 89999999999 44543
No 323
>PLN02487 zeta-carotene desaturase
Probab=97.95 E-value=1.1e-05 Score=77.52 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w 46 (325)
+++|+|||||++||++|..|.+.|++|+|+|+++.+||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 3599999999999999999999999999999999998844
No 324
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.91 E-value=1.4e-05 Score=71.75 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=36.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCe--EEEecCCCCCCccCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPY--VILERENCYASIWKK 48 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v--~v~e~~~~~Gg~w~~ 48 (325)
...+|+|+|||++||++|++|++++.++ ++||+.+++||-.+.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 3579999999999999999999997754 669999999995443
No 325
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.90 E-value=0.00023 Score=65.13 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=64.7
Q ss_pred CCeEEEECCChHHHHHHHHHHh----cC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~----~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
..+|+|||+|++|+.+|..|.+ .| .+|+++ ..+.+. + ...
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------~--~~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------P--GFP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc-------------------------------c--cCC
Confidence 3589999999999999999975 34 478888 332211 0 011
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
.++.+.+.+.+++.++.. +.++++.+++. + .+.+.++ .+ +.+|.||+|+|..
T Consensus 191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~----~--~v~~~~g-------~~-i~~D~vi~a~G~~ 242 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPD----G--ALILADG-------RT-LPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHHCCCEE--EeCCeeEEEcC----C--eEEeCCC-------CE-EecCEEEEccCCC
Confidence 246677788888888665 89999988742 2 3555443 56 8999999999943
No 326
>PLN02612 phytoene desaturase
Probab=97.89 E-value=1.7e-05 Score=76.72 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg 44 (325)
.+.+|+|||||++||++|..|.+.|++++|+|+++.+||
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 357899999999999999999999999999999998888
No 327
>PLN03000 amine oxidase
Probab=97.89 E-value=2e-05 Score=78.23 Aligned_cols=44 Identities=30% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~ 49 (325)
...+|+|||||++||.+|..|.+.|++|+|+|+++++||.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 35799999999999999999999999999999999999966543
No 328
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.88 E-value=1.8e-05 Score=76.36 Aligned_cols=40 Identities=35% Similarity=0.482 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--CCCCc
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI 45 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--~~Gg~ 45 (325)
..+||+|||+|.+||+||..+++.|.+|+|+||.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 35899999999999999999999999999999998 66663
No 329
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.87 E-value=1.8e-05 Score=75.43 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=38.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~ 47 (325)
+||+|||+||+|+.+|+.|++.|++|++||+....|+.|-
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6899999999999999999999999999999999998884
No 330
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.86 E-value=0.00018 Score=66.27 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
||+|||+|.+||++|..|.+. ++|+|+-|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999998 999999998744
No 331
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.82 E-value=0.00016 Score=66.10 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=81.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
...|+++|+|..|+.+|..|...+.+|+++++.+.. ++. .-.+++.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------------------------~~~-----lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------------------------LPR-----LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------hhh-----hhhHHHHHH
Confidence 457999999999999999999999999999998742 010 123467777
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~ 157 (325)
..++.++.++.. +.++.+.+++-++....-.|.+.++ .+ +.+|.||+++| ..|+.+.+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence 888888888655 9999999988776433344555554 67 99999999999 667766554
No 332
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00011 Score=67.16 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~ 39 (325)
...+||+|||||.+|..+|...++.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 34689999999999999999999999998888653
No 333
>PLN02976 amine oxidase
Probab=97.79 E-value=3.1e-05 Score=79.84 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=39.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~ 49 (325)
.++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999977653
No 334
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.78 E-value=0.00019 Score=65.30 Aligned_cols=58 Identities=19% Similarity=0.413 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.++.+-+.++.+..|... +|+++|..++..+ .....|.+.++ .+ +.+|+||+|.|+.+
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g-------~~-i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG-------EE-IEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC-------cE-EecCEEEEccCcch
Confidence 567777888899998665 9999999998865 22344555554 67 99999999999754
No 335
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.76 E-value=0.0014 Score=61.74 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999875
No 336
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.74 E-value=0.00029 Score=61.20 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=34.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G 43 (325)
..+|++|||||+.|++.|+.|.-+ +.+|.|+|+...++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 468999999999999999999887 88999999987554
No 337
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.73 E-value=0.00065 Score=61.90 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~ 40 (325)
..+|+|||+|..|+.+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35899999999999999999999997 99998765
No 338
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.70 E-value=3.6e-05 Score=68.24 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~ 41 (325)
||++|||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999975
No 339
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.70 E-value=5e-05 Score=70.22 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=36.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w 46 (325)
..+||+|||||..|-.+|....-+|+++.++|+++...|+-
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 35899999999999999999999999999999999666643
No 340
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00014 Score=68.88 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.....-+.+.|...|...|..+ ..++.|+++.... ++.|.|++..+ . +.+.++|.|+|.|.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~G--------~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPHG--------S-IETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccCc--------c-eecceEEechhHHH
Confidence 3455677788888899999665 9999999996643 46677887764 4 88999999999764
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.70 E-value=0.00013 Score=69.28 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|.+|+++|..|.++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999775
No 342
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.67 E-value=0.0017 Score=60.35 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK 47 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~ 47 (325)
.++.=|||+|+++|++|..|.+. |-+|.|+|+.+..||...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 35788999999999999999986 459999999998888554
No 343
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.65 E-value=0.00024 Score=61.78 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCCC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC 41 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~~ 41 (325)
+.+++|+|||||.+|+.+|..+.++ +- +|.|+|..+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3568999999999999999999875 44 8999998763
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=97.60 E-value=0.0028 Score=59.93 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998765
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.58 E-value=0.00079 Score=65.17 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998864
No 346
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.50 E-value=0.0065 Score=57.56 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~ 41 (325)
.++++|||+|..|+.+|..+.+.|. +|+|+++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4689999999999999999999996 7999998763
No 347
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.46 E-value=0.0052 Score=61.78 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~ 40 (325)
..+|+|||+|..|+-+|..+.+.|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99998875
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.45 E-value=0.0022 Score=60.64 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..+|+|||+|..|+-+|..|.+.|. +|+++++.+... ++ ....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~--------------------------~~-------~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE--------------------------MP-------ASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc--------------------------CC-------CCHH---
Confidence 4689999999999999999999998 899998865310 00 0011
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeec--------------CCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL--------------LSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
..+.+++.|+.. ++++.+.++..++ .+.-.|++... ..+ +..+ +.+|.||+|+| ..|
T Consensus 317 -~~~~~~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g--~~~~-i~~D~vi~a~G--~~p 387 (457)
T PRK11749 317 -EVEHAKEEGVEF--EWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEG--SEFT-LPADLVIKAIG--QTP 387 (457)
T ss_pred -HHHHHHHCCCEE--EecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCC--ceEE-EECCEEEECcc--CCC
Confidence 233455667654 8888888886543 11111332210 011 2257 89999999999 455
Q ss_pred C
Q 020533 152 F 152 (325)
Q Consensus 152 ~ 152 (325)
+
T Consensus 388 ~ 388 (457)
T PRK11749 388 N 388 (457)
T ss_pred C
Confidence 4
No 349
>PRK02106 choline dehydrogenase; Validated
Probab=97.43 E-value=0.00017 Score=69.87 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~ 40 (325)
..+|++|||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 35899999999999999999999 799999999985
No 350
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.43 E-value=0.00019 Score=66.59 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
++||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4799999999999999999999999999999874
No 351
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.41 E-value=0.0093 Score=59.00 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~ 41 (325)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 3589999999999999999999997 6999887753
No 352
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.39 E-value=0.00035 Score=63.06 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=69.5
Q ss_pred CeEEEECCChHHHHHHHHHHhc--------------CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~--------------g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
-.++||||||.|...|..|+.. .++|+++|..+.+-..
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m---------------------------- 270 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM---------------------------- 270 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH----------------------------
Confidence 3689999999999999999752 3589999998853100
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 74 ~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
-...+.+|.++...+.++.. ..++.|..+.... ++.+..++ +..+ +.+-.+|.|||...+|..
T Consensus 271 -----Fdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~------I~~~~~~g---~~~~-iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 271 -----FDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT------IHAKTKDG---EIEE-IPYGLLVWATGNGPRPVI 333 (491)
T ss_pred -----HHHHHHHHHHHHhhhcccee--ecccEEEeecCcE------EEEEcCCC---ceee-ecceEEEecCCCCCchhh
Confidence 11245556655555556554 8888888875432 44443322 3367 899999999997666654
Q ss_pred C
Q 020533 154 P 154 (325)
Q Consensus 154 p 154 (325)
-
T Consensus 334 k 334 (491)
T KOG2495|consen 334 K 334 (491)
T ss_pred h
Confidence 4
No 353
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0002 Score=62.53 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
..|-|||||.+|-.+|++++++|++|.++|-++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 35999999999999999999999999999987643
No 354
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.32 E-value=0.0047 Score=55.76 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE 39 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~ 39 (325)
+.+||+|+||||.|+++|..|... ..++.++|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 479999999999999999999864 4589999987
No 355
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00033 Score=61.16 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
++||+|||+|.+||+|+.+|.++|.+++|+-+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 5899999999999999999999999999998754
No 356
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.27 E-value=0.00074 Score=60.76 Aligned_cols=134 Identities=14% Similarity=0.184 Sum_probs=76.2
Q ss_pred CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH-----------HHHHHHHhhCC---HHHHHHHHHHHHH
Q 020533 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----------YLGVVLFKYVP---FGWVDTLMVMLSR 252 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~-----------~~~~~~~~~~p---~~~~~~~~~~~~~ 252 (325)
..|+|||+|++|+=+|..+++.|.+|.++.+.+. +--+... +....+....| ......+-+.-.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 4799999999999999999999999999998762 2211110 11223333444 2222212111111
Q ss_pred HHhcCccccCCC--CCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecCc---eEEeeecceecCCC
Q 020533 253 LVYGDLSKYGIP--KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQT---RTELLLKTWLGTDT 323 (325)
Q Consensus 253 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~~---~v~~~dg~~~~~d~ 323 (325)
.+..=.+++|+. .-..|.+++..... .+ +=+-++..+++.+|+++.. |..+..++ .+...+|..+.+|.
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA-~~-Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKA-SP-IVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccch-HH-HHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 111001233332 12333433221111 12 2244677789999999998 88888873 56778887777764
No 357
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.26 E-value=0.00025 Score=64.43 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=37.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~ 45 (325)
..+|++|||+|..||++|..|++.|.+|+++|++...||.
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGA 52 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcc
Confidence 4689999999999999999999999999999999777773
No 358
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.22 E-value=0.017 Score=57.14 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~ 40 (325)
..+|+|||+|..|+.+|..|.+.|. +|+++.+.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999987 599998775
No 359
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0004 Score=66.82 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=35.6
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
|.....++|++|||+|.+|..+|..|++.|.+|+|+|+..
T Consensus 1 ~~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 1 MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3445567999999999999999999998899999999884
No 360
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.20 E-value=0.003 Score=65.29 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=65.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..+|+|||+|+.|+.+|..|.+.|. .++|+|..+.+. .
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~-----------------------------------------~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS-----------------------------------------P 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh-----------------------------------------H
Confidence 4689999999999999999999996 578998765321 1
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
.+.+.+++.++.. +.++.+..+.-++ ..-.|++....+ +..+ +.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCchh
Confidence 2334456667554 8899888886432 222344442111 1267 89999999999 45543
No 361
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.19 E-value=0.00059 Score=59.78 Aligned_cols=39 Identities=36% Similarity=0.477 Sum_probs=34.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--CCCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS 44 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--~~Gg 44 (325)
..+||+|||||.+||.+|..|+..|.+|+|+|++. .+||
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 35799999999999999999999999999999764 5666
No 362
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.17 E-value=0.0053 Score=58.23 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=62.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
..+|+|||+|..|+-+|..+.+.|. +|++++..+.....+ +. ...++.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~----~~~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NK----NNPWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cc----ccCCcccch-----H
Confidence 4689999999999999999999886 688776554322100 00 000011111 1
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEee-----c----CCCCceeEEEEEeCeEEEcccC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASN-----L----LSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~-----~----~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
...+.+.+.|+.. ++++.++++..++ +..+ |++.. + ..+ +..+ +.+|.||+|+|.
T Consensus 334 ~~~~~~~~~GV~i--~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g--~~~~-i~~D~VI~A~G~ 398 (471)
T PRK12810 334 LEVSNAHEEGVER--EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEG--SEFV-LPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHHcCCeE--EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCC--ceEE-EECCEEEECcCc
Confidence 1233455567555 8888888885322 3322 33221 1 011 2367 999999999993
No 363
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.12 E-value=0.028 Score=53.54 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~ 41 (325)
.++|+|||+|..|+-+|..+.+.|. +|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4689999999999999988888875 7999988764
No 364
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.07 E-value=0.00015 Score=59.34 Aligned_cols=43 Identities=26% Similarity=0.473 Sum_probs=36.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC-CccCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY 49 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G-g~w~~~ 49 (325)
..||+|||||.+||++|+...++ ..+|.|+|.+-.+| |.|...
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG 121 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG 121 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence 36999999999999999999866 56999999987765 588754
No 365
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.06 E-value=0.00077 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+||+|||+|++|+++|..|.+.|.+++|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 366
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.95 E-value=0.052 Score=53.61 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~ 41 (325)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4689999999999999999999985 7999987753
No 367
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.94 E-value=0.00077 Score=64.95 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~ 40 (325)
|++|||+|.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999975
No 368
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.90 E-value=0.011 Score=60.63 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998764
No 369
>PLN02785 Protein HOTHEAD
Probab=96.78 E-value=0.0018 Score=62.84 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..||++|||+|.+|+.+|.+|.+ +.+|+|+|+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 36999999999999999999999 68999999986
No 370
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.76 E-value=0.0032 Score=59.37 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.++|+|||+|.+|+-+|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4689999999999999999999999999998865
No 371
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.67 E-value=0.031 Score=50.68 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=36.3
Q ss_pred CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
..+++-+++|.+++...+ +.+.+.+.....+ +..+ +..|.||+|||..
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeEEEEecccc
Confidence 345677889999987753 5588888776554 4577 8999999999964
No 372
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.66 E-value=0.0061 Score=55.12 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc----CCCe-EEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v-~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
.+..|-|||.|+-|-.+|+.|.++ |.+| .+|+..-..+- .-.
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k---------------------------------iLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK---------------------------------ILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh---------------------------------hhH
Confidence 346799999999999999999874 4554 56654432210 011
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~ 153 (325)
+.+.++-...+++-|+.+ +-|..|.++.... ....+++.++ .+ +..|.||+|+| -.|+.
T Consensus 393 eyls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEec--CCCch
Confidence 123333344456667665 8999999988765 5566777765 67 88999999999 55654
No 373
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.64 E-value=0.042 Score=56.21 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhc-C-CCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~-g-~~v~v~e~~~ 40 (325)
..+|+|||||..|+-+|..+.+. | .+|+++.+++
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 46899999999999999998887 5 3899998875
No 374
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.61 E-value=0.0025 Score=59.21 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=34.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~ 48 (325)
+..+||+|+|.|..-..+|..|++.|.+|.-+|+++.-||.|..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 35699999999999999999999999999999999999998875
No 375
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.60 E-value=0.12 Score=53.61 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~ 40 (325)
...+|+|||+|..|+-+|..+.+.|.+ |+++.++.
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 357899999999999999999999985 77776653
No 376
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.037 Score=49.16 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
.++|+|||+|-+++-.|..|.+.+.+|+++=|++.+- .. +.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence 3589999999999999999999999999998887531 11 23
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
+.+.+.+.. ...+.+++.+.++.-++ .-.|..++..+ +... +.+|.++++.|.
T Consensus 184 ~~~~l~~~~-~i~~~~~~~i~ei~G~~---v~~v~l~~~~~---~~~~-~~~~gvf~~iG~ 236 (305)
T COG0492 184 LVERLKKNV-KIEVLTNTVVKEILGDD---VEGVVLKNVKG---EEKE-LPVDGVFIAIGH 236 (305)
T ss_pred HHHHHHhcC-CeEEEeCCceeEEecCc---cceEEEEecCC---ceEE-EEeceEEEecCC
Confidence 333344331 34458999998886543 22355555321 3367 899999999994
No 377
>PRK13984 putative oxidoreductase; Provisional
Probab=96.39 E-value=0.1 Score=51.25 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=25.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC------CeEEEe
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE 37 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~------~v~v~e 37 (325)
..+|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999988753 566653
No 378
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.31 E-value=0.0068 Score=54.18 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=34.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
|..+..-.+|+|||+|..|...|..++..|++|+++|+.+.
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44443346799999999999999999999999999998863
No 379
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.29 E-value=0.038 Score=51.48 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=65.7
Q ss_pred EEECCChHHHHHH-HHHH----hcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 11 ~IIGaG~~Gl~~a-~~L~----~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6788888898887 4443 359999999877631 12236778
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~ 149 (325)
.+.+.+++.+.. ++.+++|.+++.++ +...+..... + +... +.+|.||+|+|.+.
T Consensus 264 aL~~~l~~~Gv~--I~~g~~V~~v~~~~--~~V~~v~~~~-g---~~~~-i~AD~VVLAtGrf~ 318 (422)
T PRK05329 264 ALRRAFERLGGR--IMPGDEVLGAEFEG--GRVTAVWTRN-H---GDIP-LRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHhCCCE--EEeCCEEEEEEEeC--CEEEEEEeeC-C---ceEE-EECCEEEEeCCCcc
Confidence 888888887855 49999999998764 3333322221 1 2257 89999999999653
No 380
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.28 E-value=0.0036 Score=58.02 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCC--ceEeecC
Q 020533 17 TSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLA 59 (325)
Q Consensus 17 ~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~--~~~~~~~ 59 (325)
+|||+||..|+++|++|+|||+++++||.......+ +...+..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G 45 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELG 45 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCC
Confidence 589999999999999999999999999965554444 5555544
No 381
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.26 E-value=0.0049 Score=50.38 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
+|+|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999863
No 382
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.26 E-value=0.0053 Score=49.00 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+|+|||||..|.++|..|+++|.+|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998875
No 383
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.018 Score=50.75 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=73.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 87 (325)
-+-+|||||..+|.+|-.|.-.|+++++.=|+--+-|- ..++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGF----------------------------------Dqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGF----------------------------------DQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccc----------------------------------cHHHHHHH
Confidence 46799999999999999999999999998777432110 13678888
Q ss_pred HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (325)
Q Consensus 88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~ 148 (325)
....+..|+.. ...+..+.++..+ .+...|...+..++ +..+ -.+|.|++|.|.-
T Consensus 245 ~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 245 AEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNTG--EEGE-EEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHHhCCce--eecccceeeeecc-CCcEEEEeeccccc--cccc-chhhhhhhhhccc
Confidence 88889999764 4444566666654 46677777665543 2234 5789999999943
No 384
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.20 E-value=0.11 Score=53.33 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=30.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~ 40 (325)
..+|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 56899999999999999998886 76 799998875
No 385
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.17 E-value=0.17 Score=49.32 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~ 40 (325)
..+|+|||+|..|+-++..+.+.+ .+++|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999888888 5788888775
No 386
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0086 Score=50.82 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
++++|||+|..|...|..|.+.|.+|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 3799999999999999999999999999999874
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.05 E-value=0.0055 Score=45.12 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
++++++|+|||+|..|..-+..|.+.|++|+++.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4678999999999999999999999999999988874
No 388
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.00 E-value=0.024 Score=54.48 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+.++|+|||+|.||.-.|..|++...+|.+.-|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 45799999999999999999999988998887764
No 389
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.97 E-value=0.0089 Score=57.14 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCC
Q 020533 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY 42 (325)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~ 42 (325)
...||.+|||||-+|..+|.+|++. ..+|.++|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3579999999999999999999997 6799999997754
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.95 E-value=0.0082 Score=49.29 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
++|+|||.|..||.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3799999999999999999999999999998874
No 391
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.94 E-value=0.041 Score=50.29 Aligned_cols=60 Identities=7% Similarity=-0.006 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
...++.+.|...+++.++.. +++++|.+++ + +.|.+.+.... .. ++||.||+|||..+.|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i~--~--~~~~v~~~~~~------~~-~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGWQ--G--GTLRFETPDGQ------ST-IEADAVVLALGGASWS 143 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEEe--C--CcEEEEECCCc------eE-EecCEEEEcCCCcccc
Confidence 67899999999999988665 9999999982 2 35888775321 46 8999999999975544
No 392
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.0086 Score=53.99 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=44.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCC
Q 020533 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD 52 (325)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~ 52 (325)
.+..+||+|||.|..--..|..+++.|.+|.=+|+++..||.|....++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 3567999999999999999999999999999999999999999987665
No 393
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.012 Score=51.93 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||+|..|...|..|+..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999999874
No 394
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.77 E-value=0.036 Score=49.18 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=72.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
.+++++|+|||..++..|--++..|-++.+|=|.+.+- -.| .+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------R~F--------------D~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------RGF--------------DEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------cch--------------hHHHHH
Confidence 35789999999999999999999999999988776421 001 124566
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p 154 (325)
.+.+..+.-+++. +-++.++.+.... ++...+....+ .. ..+|.|+.|+| ..|+..
T Consensus 235 ~v~~~~~~~ginv--h~~s~~~~v~K~~-~g~~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk 290 (478)
T KOG0405|consen 235 LVTEHLEGRGINV--HKNSSVTKVIKTD-DGLELVITSHG-------TI-EDVDTLLWAIG--RKPNTK 290 (478)
T ss_pred HHHHHhhhcceee--cccccceeeeecC-CCceEEEEecc-------cc-ccccEEEEEec--CCCCcc
Confidence 6666677777655 8888888887664 34444544443 22 45899999999 555543
No 395
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.76 E-value=0.011 Score=55.81 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.3
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
+|+|||+|++|+++|+.|.++|++|+++|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987643
No 396
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.74 E-value=0.024 Score=52.15 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=30.2
Q ss_pred eEEEECcCCCHHHHHHHH--hhccCeEEEEEecCCe
Q 020533 188 NVLVVGSGNSGMEIALDL--ANHAAKTSLVVRSPVH 221 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l--~~~~~~v~~~~r~~~~ 221 (325)
.|+|||+|.+|.-+|..| +..+.+|.++.+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 489999999999999999 7778899999988744
No 397
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.74 E-value=0.011 Score=39.84 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=27.0
Q ss_pred EECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 191 VVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 191 VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
|||+|.+|+-+|..|++.+.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999987
No 398
>PLN02463 lycopene beta cyclase
Probab=95.65 E-value=0.014 Score=54.81 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=32.9
Q ss_pred CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p 224 (325)
-+|+|||+|.+|.-+|..|++.|.+|.++.+++....|
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p 66 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP 66 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc
Confidence 47999999999999999999999999999998743333
No 399
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.60 E-value=0.016 Score=51.81 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 3799999999999999999999999999999863
No 400
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.05 Score=55.28 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=35.2
Q ss_pred CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
....|++|+|||+|.+|.-+|..|.+.|..|++..|+.
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 44568999999999999999999999999999999997
No 401
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.50 E-value=0.029 Score=54.55 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=65.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 86 (325)
+..-+|||+|.-||.+|..|...|.++++++-.+.+- .. +... .-.+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------------------er--QLD~---~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------------------ER--QLDR---TAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------------------HH--hhhh---HHHHH
Confidence 3457999999999999999999999999997665310 00 0001 12245
Q ss_pred HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (325)
Q Consensus 87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~ 147 (325)
|+...++.|+.. +++.....+.... ..-.+.+.++ .. +.||.||+|+|.
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG-------~~-i~ad~VV~a~GI 241 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG-------TE-IPADLVVMAVGI 241 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC-------Cc-ccceeEEEeccc
Confidence 666677788766 5565555554321 2234666665 55 899999999994
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.43 E-value=0.029 Score=46.88 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||||.+|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999998764
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.42 E-value=0.018 Score=42.36 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+.++|+|||+|..|..-+..|.+.|.+++|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35789999999999999999999999999998883
No 404
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.41 E-value=0.026 Score=52.22 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=32.8
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
.++++|||+|.+|++.|.+|+..|-+|+++.+.|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5789999999999999999999999999999998
No 405
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.40 E-value=0.021 Score=50.40 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||+|..|..+|..|++.|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 3699999999999999999999999999998863
No 406
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.38 E-value=0.016 Score=53.57 Aligned_cols=35 Identities=37% Similarity=0.486 Sum_probs=32.3
Q ss_pred CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~ 221 (325)
++|+|||+|..|+++|..|++.|.+|+++.+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999988743
No 407
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.025 Score=53.99 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
|..+..-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44444446799999999999999999999999999998874
No 408
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.30 E-value=0.044 Score=42.48 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~ 40 (325)
...+++|||+|-+|-.++..|...|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457899999999999999999999996 99998875
No 409
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.26 E-value=0.032 Score=45.06 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999865
No 410
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.20 E-value=0.032 Score=43.98 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=29.3
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
|+|+|+|..|...|..|.+.|.+|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998875
No 411
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.026 Score=49.94 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+|+|||+|..|..+|..|++.|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999875
No 412
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.027 Score=49.69 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999876
No 413
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.18 E-value=0.019 Score=53.32 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=31.3
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
+|+|||+|.+|+++|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999998874
No 414
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.14 E-value=0.039 Score=43.99 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~ 39 (325)
...+|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3578999999999999999999999999999543
No 415
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.12 E-value=0.026 Score=47.11 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=33.5
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
++.+++|+|||+|.+|..-+..|.+.|++|+++....
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4678999999999999999999999999999987664
No 416
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.035 Score=52.33 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.++|+|+|+|..|+++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999875
No 417
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.09 E-value=0.028 Score=49.70 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998863
No 418
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.07 E-value=0.037 Score=52.10 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.5
Q ss_pred CCCeEEEECcCCCHHHHHHHHh-hccCeEEEEEecCC
Q 020533 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSPV 220 (325)
Q Consensus 185 ~~~~v~VvG~G~s~~e~a~~l~-~~~~~v~~~~r~~~ 220 (325)
.+++|+|||+|.+|+.+|..++ +.|.+|+++.|.|.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5789999999999999999765 56889999999873
No 419
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.05 E-value=0.027 Score=44.86 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEE
Q 020533 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216 (325)
Q Consensus 182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~ 216 (325)
.++.+++|+|||+|..|...+..|.+.|.+|+++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45679999999999999999999999999999884
No 420
>PRK04148 hypothetical protein; Provisional
Probab=95.04 E-value=0.025 Score=43.46 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=51.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCC------CCCCH
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYP------MFVSR 80 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 80 (325)
..++++||.| .|...|..|.+.|++|+.+|.++..=.....+.-+....+.- .|....+. ..-+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf--------~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLF--------NPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCC--------CCCHHHHhcCCEEEEeCCC
Confidence 3679999999 999999999999999999998874110000000011111110 01111111 22356
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 020533 81 AQFIEHLDHYVSHFNIGP 98 (325)
Q Consensus 81 ~~~~~yl~~~a~~~~l~~ 98 (325)
.|+..++.+.+++.+...
T Consensus 88 ~el~~~~~~la~~~~~~~ 105 (134)
T PRK04148 88 RDLQPFILELAKKINVPL 105 (134)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 789999999999987653
No 421
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.98 E-value=0.026 Score=53.51 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCCeEEEECcCCCHHHHHHHHhh--ccCeEEEEEecCC
Q 020533 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSPV 220 (325)
Q Consensus 185 ~~~~v~VvG~G~s~~e~a~~l~~--~~~~v~~~~r~~~ 220 (325)
.+++|+|||+|.+|+.+|..|++ .|.+|+++.|.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 46899999999999999999986 6889999999873
No 422
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.96 E-value=0.047 Score=48.85 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|..|...|..|++.|.+|+++.|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3589999999999999999999999999999865
No 423
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.034 Score=46.22 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=34.1
Q ss_pred CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
.++....|+|||+|+||.-+|..|++.|.+|.++.|+-
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 44556789999999999999999999999999999974
No 424
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.84 E-value=0.052 Score=45.24 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~ 39 (325)
..++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3568999999999999999999999999999764
No 425
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.81 E-value=0.073 Score=49.00 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p 151 (325)
.....+...+.+.+.+ |.. ++++++|.+++.++ +.|.|++.++ .. +++|.||+|+|.++..
T Consensus 132 idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAGQ 192 (381)
T ss_pred cChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCccccc
Confidence 3556677777777776 744 48999999998754 5688877654 45 8999999999987644
No 426
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.80 E-value=0.034 Score=46.37 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.7
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~ 218 (325)
++.+++|+|||+|..|...+..|.+.|.+|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 467899999999999999999999999999999764
No 427
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.79 E-value=0.05 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~ 40 (325)
+.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999999 799999765
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.75 E-value=0.039 Score=49.94 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=30.6
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+|.|||.|..||..|..|++.|++|+++|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 69999999999999999999999999999876
No 429
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.75 E-value=0.045 Score=50.18 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999875
No 430
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.72 E-value=0.042 Score=51.22 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 431
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.4 Score=42.84 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=65.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (325)
+.+||+|||+|-+|+.+|..|+--=-.|+++|=.+.+ +-.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL---------------------------------------kAD~ 393 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL---------------------------------------KADA 393 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh---------------------------------------hhHH
Confidence 3579999999999999999998766689999865532 1224
Q ss_pred HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (325)
Q Consensus 86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g 158 (325)
.|++.+.... +..|..|..-+.+.-+. +.---+.+.+..++ +... +.-+-|++-.| -.|+..-+.|
T Consensus 394 VLq~kl~sl~-Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sg--e~~~-l~LeGvFVqIG--L~PNT~WLkg 459 (520)
T COG3634 394 VLQDKLRSLP-NVTIITNAQTTEVKGDG-DKVTGLEYRDRVSG--EEHH-LELEGVFVQIG--LLPNTEWLKG 459 (520)
T ss_pred HHHHHHhcCC-CcEEEecceeeEEecCC-ceecceEEEeccCC--ceeE-EEeeeeEEEEe--cccChhHhhc
Confidence 4555555443 23446665555554332 12222455554443 3355 66778888888 3454433433
No 432
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.68 E-value=0.045 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999998763
No 433
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.66 E-value=0.051 Score=43.60 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+|.+||.|..|..+|.+|.++|+++.++|+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999886
No 434
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.66 E-value=0.05 Score=48.22 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||+|..|...|..|+..|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 435
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.59 E-value=0.057 Score=48.13 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
++|+|||+|..|...|..|.+.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 579999999999999999999999999999964
No 436
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.57 E-value=0.052 Score=48.18 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+|+|||+|..|...|..|.+.|.+|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999854
No 437
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=94.49 E-value=0.056 Score=49.60 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=29.4
Q ss_pred eEEEECcCCCHHHHHHHHhhc--cCeEEEEEecC
Q 020533 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP 219 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~--~~~v~~~~r~~ 219 (325)
.|+|||+|.+|..+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 489999999999999999987 88999999987
No 438
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.46 E-value=0.056 Score=41.91 Aligned_cols=37 Identities=41% Similarity=0.629 Sum_probs=33.6
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCe-EEEEEecC
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~ 219 (325)
.+.+++++|+|+|-+|--++..|...|.+ ++++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 56789999999999999999999999865 99999985
No 439
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.44 E-value=0.18 Score=45.24 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (325)
Q Consensus 77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~ 152 (325)
+.....+...+.+.+.+.|... ..+++|++++.++ +.| .|.+.+ .+ +.||.||+|+|.++...
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEI--IEHTEVQHIEIRG--EKVTAIVTPS--------GD-VQADQVVLAAGAWAGEL 196 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEE--EccceEEEEEeeC--CEEEEEEcCC--------CE-EECCEEEEcCChhhhhc
Confidence 4456788888888888888654 8999999998754 444 344433 36 89999999999876543
No 440
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.44 E-value=0.062 Score=51.09 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
...+|+|||+|+.|+.++..+...|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999876
No 441
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.43 E-value=0.072 Score=47.57 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+.+|.|||+|..|.++|..|.+.|++|++++|+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999875
No 442
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.42 E-value=0.07 Score=48.08 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|..|...|..|.+.|++|++++|+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999965
No 443
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.35 E-value=0.07 Score=47.66 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999875
No 444
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.062 Score=50.98 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.++|+|+|.|-+|.++|+.|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 5689999999999999999999999999999654
No 445
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.24 E-value=0.064 Score=40.10 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 10 VIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
|+|+|.|..|..++..|.+.+.+++++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998879999999873
No 446
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.22 E-value=0.074 Score=49.20 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
..+|+|+|+|+.|+.+|..++..|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 56899999999999999999999999999998763
No 447
>PRK07236 hypothetical protein; Provisional
Probab=94.21 E-value=0.054 Score=49.95 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
..+|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 47899999999999999999999999999999873
No 448
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.21 E-value=0.072 Score=47.35 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEec
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILER 38 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~ 38 (325)
+|+|||+|..|...|..|.+.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 449
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.20 E-value=0.047 Score=49.19 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=29.3
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
+|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999873
No 450
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.19 E-value=0.062 Score=46.67 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=26.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-------CCeEEEecC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILERE 39 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g-------~~v~v~e~~ 39 (325)
..+|+|||+|..||+.|..+.+.. .+|++++-.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 358999999999999999888843 478888643
No 451
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.12 E-value=0.054 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=30.9
Q ss_pred CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
++|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999875
No 452
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.07 E-value=0.061 Score=54.66 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
...+|+|+|||+|.+|+.+|..|+..|.+||++.+.+
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 3468999999999999999999999999999999864
No 453
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.05 E-value=0.065 Score=49.93 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998764
No 454
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.01 E-value=0.088 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERE 39 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~ 39 (325)
..+|+|||+|-.|..+|..|++.|+ +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999999 69999987
No 455
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.00 E-value=0.12 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..++|+|+|.|-.|..+|+.|.+.|.+|+++|++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35689999999999999999999999999988764
No 456
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.98 E-value=0.085 Score=47.75 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+|+|||+|..|...|..|.+.|++|++++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 469999999999999999999999999999864
No 457
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.85 E-value=0.08 Score=50.40 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
..+.++|+|||+|.+|+-+|..|.+.|-+|++++-++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 3345789999999999999999999999999987653
No 458
>PRK06847 hypothetical protein; Provisional
Probab=93.84 E-value=0.07 Score=48.86 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=32.4
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.++|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999999873
No 459
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.82 E-value=0.074 Score=41.24 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 10 VIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
++|+|+|+.+.+++..+...|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998864
No 460
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.81 E-value=0.11 Score=46.28 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~ 40 (325)
.+|+|||+|..|..+|..|+..|. +|+++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999877 899999855
No 461
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.79 E-value=0.078 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998864
No 462
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.78 E-value=0.099 Score=46.65 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSI--PYVILERENC 41 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~ 41 (325)
+|+|||+|..|.++|..|+..|. +++++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999998763
No 463
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=93.73 E-value=0.065 Score=44.19 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=29.6
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
+|+|||+|.+|+.+|..|+..+.+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999997766
No 464
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.70 E-value=0.12 Score=43.86 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCC---eEEEecCC
Q 020533 6 AGVEVIMVGAGTSGLATAACLSLQSIP---YVILEREN 40 (325)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~---v~v~e~~~ 40 (325)
...+|+|+|||-+|..+|..|.+.|.+ +.++||+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 346899999999999999999999985 99999985
No 465
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.69 E-value=0.1 Score=46.20 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|||+|..|..++..|...|.+|+++++++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999999999999999999999999999885
No 466
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.69 E-value=0.13 Score=40.10 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=29.6
Q ss_pred eEEEECC-ChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533 9 EVIMVGA-GTSGLATAACLSLQSI--PYVILEREN 40 (325)
Q Consensus 9 ~v~IIGa-G~~Gl~~a~~L~~~g~--~v~v~e~~~ 40 (325)
+|+|||+ |..|.++|..|...++ +++++|.++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 7999999 9999999999999876 799999986
No 467
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.68 E-value=0.13 Score=41.38 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHhcCCCeEEEecC
Q 020533 6 AGVEVIMVGAGT-SGLATAACLSLQSIPYVILERE 39 (325)
Q Consensus 6 ~~~~v~IIGaG~-~Gl~~a~~L~~~g~~v~v~e~~ 39 (325)
..++|+|||+|- +|..+|..|.++|.+++++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457999999996 6999999999999999999865
No 468
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.68 E-value=0.093 Score=47.08 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
.+|+|||+|..|..+|..|.+.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 369999999999999999999999999999875
No 469
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.66 E-value=0.092 Score=48.95 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~ 42 (325)
.++|+|+|-|-+|+++|+.|.+.|.+|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 678999999999999999999999999999976643
No 470
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.59 E-value=0.14 Score=45.76 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~ 41 (325)
..+|+|||+|..|-++|..|...++ +++++|.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 4699999999999999999999988 7999998653
No 471
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.56 E-value=0.11 Score=46.76 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+|+|||+|..|.+.|..|.+.|.+|++++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999864
No 472
>PRK05868 hypothetical protein; Validated
Probab=93.52 E-value=0.075 Score=48.79 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=31.8
Q ss_pred CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999874
No 473
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=93.51 E-value=0.1 Score=45.90 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=30.6
Q ss_pred CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.+.+|||+|.+|.=+|..++++|.+|-++.|+++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 3689999999999999999999999999998863
No 474
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.50 E-value=0.09 Score=48.57 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=32.6
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
..+|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999999973
No 475
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.49 E-value=0.11 Score=49.50 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~ 41 (325)
.+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3799999999999999999999999999998753
No 476
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.42 E-value=0.18 Score=47.62 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
.-+|+|||+|.+|.-+|..|++.|.+|.++.|++.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 45899999999999999999999999999999864
No 477
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.11 Score=49.59 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|+|.|.+|++++..|...|.+|++.|.++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999653
No 478
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.38 E-value=0.086 Score=49.54 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=29.5
Q ss_pred CeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecC
Q 020533 187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP 219 (325)
Q Consensus 187 ~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~ 219 (325)
++|+|||+|.+|+-+|..|++.| .+|++++.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 57999999999999999999987 6899998754
No 479
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.34 E-value=0.15 Score=41.11 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCCCCCeEEEECcCCC-HHHHHHHHhhccCeEEEEEecC
Q 020533 182 KPYGGKNVLVVGSGNS-GMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 182 ~~~~~~~v~VvG~G~s-~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
..+.+++++|||+|.+ |.-+|..|.+.|.+|+++.|+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 4578999999999985 8889999999998999999874
No 480
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.34 E-value=0.079 Score=49.21 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=38.8
Q ss_pred ccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhc-c-CeEEEEEecC
Q 020533 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP 219 (325)
Q Consensus 170 g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~-~-~~v~~~~r~~ 219 (325)
+....+..|+.....+..+|+|||+|.+|+-+|..|++. | .+|+++.|+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 14 GHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 334445556665555667899999999999999999985 8 4899998863
No 481
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.28 E-value=0.087 Score=47.47 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=29.7
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~ 218 (325)
+|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999987
No 482
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=93.28 E-value=0.09 Score=46.10 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.4
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
+|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999986
No 483
>PRK06753 hypothetical protein; Provisional
Probab=93.23 E-value=0.092 Score=48.07 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=31.3
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~ 220 (325)
+|+|||+|.+|.-+|..|++.|.+|++++|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999984
No 484
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=93.22 E-value=0.078 Score=44.20 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=28.6
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
...|+|||+|.+|.-+|..|++.|.+|.++.|+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999999999999999999999999975
No 485
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.22 E-value=0.13 Score=46.93 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (325)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~ 40 (325)
.+|+|||||-.|..+|..|++.+ .+|+|.||+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 57999999999999999999998 8999999984
No 486
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.22 E-value=0.09 Score=49.22 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC----Ceeec
Q 020533 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP----VHVLS 224 (325)
Q Consensus 186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~----~~~~p 224 (325)
.++|+|||+|.+|.-.|..|.+.|.+++++.|++ .|..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 5799999999999999999999999999999985 46665
No 487
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.19 E-value=0.08 Score=48.50 Aligned_cols=29 Identities=45% Similarity=0.655 Sum_probs=25.4
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEE
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVV 216 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~ 216 (325)
+|+|||+|.+|+|.|..+++.|.+|.++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 58999999999999999999999999984
No 488
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.17 E-value=0.37 Score=44.68 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCC-CCCC
Q 020533 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGET-TNPF 152 (325)
Q Consensus 78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~-~~p~ 152 (325)
.+...+.+.|.+.+++.|... ..+++|.+++.++ +.++ |.+.++. ..+ +++|.+|+|+|.| +...
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~i--l~g~~V~~i~~~~--~~v~~V~t~~g~-----~~~-l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVM--LPGDRVLRAEFEG--NRVTRIHTRNHR-----DIP-LRADHFVLASGSFFSNGL 326 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEE--EECcEEEEEEeeC--CeEEEEEecCCc-----cce-EECCEEEEccCCCcCHHH
Confidence 456788888888899888654 7888999988765 4444 3333321 147 8999999999987 5543
No 489
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.12 E-value=0.11 Score=45.64 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
+|.|||.|..|.+.|..|.+.|++|.++|+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999875
No 490
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.12 Score=49.23 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
+.+++|+|||+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457899999999999999999999999999988664
No 491
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.07 E-value=0.13 Score=48.62 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3589999999999999999999999999999765
No 492
>PRK07233 hypothetical protein; Provisional
Probab=93.07 E-value=0.094 Score=48.95 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=29.8
Q ss_pred eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 58999999999999999999999999998875
No 493
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.06 E-value=0.17 Score=42.21 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~ 40 (325)
..+|+|||+|-.|..+|..|.+.|+ +++++|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 5689999999999999999999998 899999864
No 494
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.06 E-value=0.16 Score=39.70 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533 9 EVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (325)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~ 40 (325)
+|+|||+|-.|..+|..|.+.|+ +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999775
No 495
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.19 Score=45.06 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~ 48 (325)
.+||+|.|.|..-...+..|+..|.+|..||+++.-|++...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~as 47 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSAS 47 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccc
Confidence 699999999999999999999999999999999998876443
No 496
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.03 E-value=0.12 Score=43.52 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (325)
Q Consensus 183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~ 219 (325)
..++++|+|||||..|..=+..|.+.|++||++...-
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4568899999999999999999999999999887653
No 497
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.00 E-value=0.14 Score=45.59 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN 40 (325)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~ 40 (325)
|+.+. ..+|+|||+|..|.+.|..|.+.|. +|.++++++
T Consensus 1 ~~~~~-~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 1 MSAPL-FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCccC-CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 55554 3579999999999999999999985 789999875
No 498
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.99 E-value=0.17 Score=44.02 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~ 40 (325)
..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4689999999999999999999996 899999765
No 499
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.99 E-value=0.15 Score=44.97 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~ 40 (325)
..+++|||+|..|..+|..|...|.+|++++|+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
No 500
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.99 E-value=0.21 Score=44.84 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (325)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~ 41 (325)
..+|+|||||..|..+|..|+..|+ +++++|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 8999998874
Done!