Query 020534
Match_columns 325
No_of_seqs 13 out of 15
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 04:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 94.3 0.021 7.2E-07 59.7 3.3 79 7-88 866-944 (1184)
2 1i84_S Smooth muscle myosin he 90.3 0.38 1.3E-05 50.4 6.4 19 70-88 912-930 (1184)
3 3qh9_A Liprin-beta-2; coiled-c 86.6 1.5 5.1E-05 34.8 6.0 51 264-314 19-75 (81)
4 1c1g_A Tropomyosin; contractIl 85.8 11 0.00039 29.6 26.8 19 6-24 14-32 (284)
5 2ocy_A RAB guanine nucleotide 85.1 18 0.00061 31.2 13.9 129 10-163 18-147 (154)
6 3na7_A HP0958; flagellar bioge 78.7 33 0.0011 29.9 16.9 59 105-163 13-71 (256)
7 2efr_A General control protein 77.8 32 0.0011 29.4 15.9 97 62-169 26-122 (155)
8 3iv1_A Tumor susceptibility ge 77.1 4.4 0.00015 31.7 5.4 55 93-161 22-76 (78)
9 2dfs_A Myosin-5A; myosin-V, in 73.4 76 0.0026 33.7 15.2 46 231-283 997-1042(1080)
10 1x8y_A Lamin A/C; structural p 70.9 18 0.00061 27.7 7.4 60 95-157 2-61 (86)
11 3oja_B Anopheles plasmodium-re 70.3 23 0.00077 33.1 9.4 34 129-162 549-582 (597)
12 3i00_A HIP-I, huntingtin-inter 69.2 6.4 0.00022 32.4 4.9 60 86-145 30-89 (120)
13 2e7s_A RAB guanine nucleotide 67.8 11 0.00038 32.0 6.1 57 104-160 75-132 (135)
14 2dfs_A Myosin-5A; myosin-V, in 66.5 34 0.0012 36.3 10.8 40 122-164 1003-1042(1080)
15 1gk4_A Vimentin; intermediate 64.6 31 0.0011 26.0 7.6 59 96-157 1-59 (84)
16 3ghg_A Fibrinogen alpha chain; 64.2 13 0.00045 37.8 6.8 71 230-309 69-140 (562)
17 1c1g_A Tropomyosin; contractIl 63.1 53 0.0018 25.7 27.8 28 7-34 8-35 (284)
18 3tnu_B Keratin, type II cytosk 62.0 56 0.0019 26.1 9.0 59 96-157 50-108 (129)
19 3m0d_C TNF receptor-associated 58.3 51 0.0017 24.0 7.8 54 105-158 8-61 (65)
20 3tnu_A Keratin, type I cytoske 57.6 64 0.0022 25.8 8.7 59 96-157 52-110 (131)
21 3na7_A HP0958; flagellar bioge 55.5 1E+02 0.0036 26.7 14.7 105 38-142 34-143 (256)
22 3brv_B NF-kappa-B essential mo 55.0 11 0.00038 29.2 3.6 44 141-184 4-47 (70)
23 3oja_B Anopheles plasmodium-re 52.4 1.5E+02 0.0051 27.6 11.5 29 136-164 528-556 (597)
24 2b9c_A Striated-muscle alpha t 51.6 75 0.0026 26.6 8.4 70 105-174 54-123 (147)
25 3hnw_A Uncharacterized protein 47.5 85 0.0029 25.9 8.1 51 113-163 71-121 (138)
26 2l2l_A Transcriptional repress 46.1 18 0.00063 25.8 3.3 18 242-259 4-21 (43)
27 3tnu_B Keratin, type II cytosk 45.7 64 0.0022 25.7 6.9 90 38-137 17-106 (129)
28 3tnu_A Keratin, type I cytoske 42.8 60 0.002 26.0 6.3 90 38-137 19-108 (131)
29 1ez3_A Syntaxin-1A; three heli 41.9 1.1E+02 0.0038 23.2 7.7 61 97-157 13-80 (127)
30 3lay_A Zinc resistance-associa 41.4 84 0.0029 27.0 7.3 18 264-281 113-130 (175)
31 3bas_A Myosin heavy chain, str 39.2 1.3E+02 0.0043 23.0 8.3 56 108-163 26-81 (89)
32 3s9g_A Protein hexim1; cyclin 38.8 1.6E+02 0.0054 24.3 8.1 50 232-311 25-76 (104)
33 2q6q_A Spindle POLE BODY compo 38.6 1.1E+02 0.0039 23.8 6.9 56 134-200 6-61 (74)
34 3hnw_A Uncharacterized protein 37.5 1.5E+02 0.005 24.5 8.0 50 230-283 73-122 (138)
35 3u59_A Tropomyosin beta chain; 36.4 1.4E+02 0.0049 22.9 10.5 53 230-287 7-59 (101)
36 3cve_A Homer protein homolog 1 36.2 1.4E+02 0.0047 22.9 7.0 45 120-164 10-54 (72)
37 3i00_A HIP-I, huntingtin-inter 34.9 84 0.0029 25.7 6.1 46 237-282 38-86 (120)
38 3cvf_A Homer-3, homer protein 34.3 1.6E+02 0.0055 22.8 7.4 57 120-176 16-72 (79)
39 3qne_A Seryl-tRNA synthetase, 34.0 1E+02 0.0034 30.4 7.5 22 261-282 68-89 (485)
40 1deq_A Fibrinogen (alpha chain 33.4 2.9E+02 0.01 27.0 10.4 21 268-294 145-165 (390)
41 3a7p_A Autophagy protein 16; c 30.7 2.3E+02 0.0079 24.5 8.3 63 97-163 69-135 (152)
42 2jee_A YIIU; FTSZ, septum, coi 30.4 1.3E+02 0.0045 23.5 6.2 34 131-164 6-39 (81)
43 4afl_A P29ING4, inhibitor of g 28.9 1.9E+02 0.0065 21.9 8.5 86 36-137 11-96 (104)
44 3mq9_A Bone marrow stromal ant 27.9 3.5E+02 0.012 24.6 11.5 68 38-121 375-442 (471)
45 2eqb_B RAB guanine nucleotide 27.1 2.5E+02 0.0084 22.6 10.6 31 38-68 7-37 (97)
46 3u1c_A Tropomyosin alpha-1 cha 26.1 2.3E+02 0.0078 22.0 8.7 55 230-289 7-61 (101)
47 3vkg_A Dynein heavy chain, cyt 24.8 9.1E+02 0.031 29.3 14.2 79 101-179 2012-2090(3245)
48 1h3l_A RNA polymerase sigma fa 24.7 30 0.001 24.0 1.5 15 260-274 33-47 (87)
49 1wlq_A Geminin; coiled-coil; 2 24.5 93 0.0032 24.7 4.4 37 120-163 34-70 (83)
50 1jcd_A Major outer membrane li 20.4 2.2E+02 0.0075 20.5 5.3 37 232-268 4-43 (52)
51 3trt_A Vimentin; cytoskeleton, 20.0 2.5E+02 0.0085 20.1 8.1 52 228-282 5-67 (77)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.34 E-value=0.021 Score=59.75 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=30.1
Q ss_pred hhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhh
Q 020534 7 IDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEES 86 (325)
Q Consensus 7 IDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEs 86 (325)
++-++..+..-...+..+.+.+..|+-++. .+...+...+.++.....+.-.+..+....+.++....-.++.+++.
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~---~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~ 942 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKN---LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433222 22223333333333333333333444444444444444444444443
Q ss_pred hh
Q 020534 87 IS 88 (325)
Q Consensus 87 is 88 (325)
+.
T Consensus 943 l~ 944 (1184)
T 1i84_S 943 SQ 944 (1184)
T ss_dssp --
T ss_pred HH
Confidence 33
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.31 E-value=0.38 Score=50.41 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=7.7
Q ss_pred HHHhhhhhhhHHHHHhhhh
Q 020534 70 EERLRNSALHIKKLEESIS 88 (325)
Q Consensus 70 E~eLq~sal~IeKLEEsis 88 (325)
+.++......+.+|++.+.
T Consensus 912 e~~l~~l~~~~~~Le~~l~ 930 (1184)
T 1i84_S 912 EEMRVRLAAKKQELEEILH 930 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444433
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.62 E-value=1.5 Score=34.80 Aligned_cols=51 Identities=31% Similarity=0.372 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHhhh----HHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhcc
Q 020534 264 EEAEDLAQEMAELRYQMTSL----LEEECKRRAC-IEQASLQRIA-ELETQIEKGQN 314 (325)
Q Consensus 264 EEAEDLtQEMAELRYQmTgl----LEEEcKRRaC-IEQASlQrIa-ELEAQi~ke~~ 314 (325)
-+||||.|||.+|||.+|.| +--|-|-+|- -|-|+||+.- .=+|-|++-|.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46889999999999999987 3335666666 6788888743 33555554443
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=85.76 E-value=11 Score=29.58 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=7.2
Q ss_pred hhhhhHHHhhhhhhhhhhh
Q 020534 6 EIDYLQDQLNARNEEVYSL 24 (325)
Q Consensus 6 EIDYLqDQLn~Rn~Evn~l 24 (325)
+||-+.+++.--..++..+
T Consensus 14 ~~~~~~~~~~~l~~~l~~l 32 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAA 32 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333333
No 5
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.06 E-value=18 Score=31.17 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=75.7
Q ss_pred hHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhc
Q 020534 10 LQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISS 89 (325)
Q Consensus 10 LqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS 89 (325)
|-|.|..-..+....+.-|+.||. +.++...+..++.--+.++--|+.+|..-...-..+--...+++
T Consensus 18 LeD~L~~~R~el~~~~~ri~~lE~-------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie----- 85 (154)
T 2ocy_A 18 LEEQLNKSLKTIASQKAAIENYNQ-------LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN----- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH-------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 566666666666666666666553 33333333333333333333344444322211111112222222
Q ss_pred cccccccchhhhhhhHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020534 90 SALESQCEIESLKIDMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 90 ~tLeSQcEIESmKLD~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
-++-.|=.+||+ |.+.--..-.+.+....-...|+.++.++...++.+..+...|+.-+-.
T Consensus 86 -------------~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 86 -------------KEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678885 6666656666677777788889999999999999999999999876544
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.72 E-value=33 Score=29.93 Aligned_cols=59 Identities=8% Similarity=0.038 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020534 105 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 105 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
+-.+...+..-....++-..+-+.+..-+..++.++..++.-++.++.+.+.+...+..
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333334444444445555555555555555555555555444443
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.83 E-value=32 Score=29.39 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=68.4
Q ss_pred HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 020534 62 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQ 141 (325)
Q Consensus 62 L~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q 141 (325)
+=.+|++.|..+..+-..|..||+.+-.++ .+| -.||-+--.|-.--+.--..-..+...+++.+..-.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~-------~nl----KsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT-------NNL----KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhh----ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998877666 233 346655554443333333333445556666667777
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhccchhH
Q 020534 142 DSQEIIECLDKENKELKEKLDSYETNGR 169 (325)
Q Consensus 142 ~Aq~~i~~L~kenkeL~ekl~~se~n~r 169 (325)
.|...+.-|++.+..|.+.|.....+.+
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999988644443
No 8
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=77.14 E-value=4.4 Score=31.71 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=46.5
Q ss_pred ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 020534 93 ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKL 161 (325)
Q Consensus 93 eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl 161 (325)
-+||||+|++ +.+++--.-+.+++.+|..++-.-.+.+++|+.|...+++|..-+
T Consensus 22 q~qaEl~sLr--------------rT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 22 RAQAELNALK--------------RTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHH--------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888875 566666777889999999999999999999999999999987544
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.41 E-value=76 Score=33.71 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 020534 231 KEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL 283 (325)
Q Consensus 231 ~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTgl 283 (325)
++.+.+..+.....+.-..+++++|. +....|..|-+.||-|+..+
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~-------~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETE-------QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555554 34445666666666666554
No 10
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=70.94 E-value=18 Score=27.65 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=36.8
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020534 95 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 95 QcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
+|||+++|--..+||.++-|+..-. ..+-..+...|..++.+++.++.-+.+...+..+|
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp ----------CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998887633 33455677778888888888887777766666655
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.26 E-value=23 Score=33.06 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 020534 129 MNSLIKELEVRTQDSQEIIECLDKENKELKEKLD 162 (325)
Q Consensus 129 m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~ 162 (325)
|+..+++-+.++.+.+.-...+..+.++|.+++.
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333333444444444433
No 12
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.24 E-value=6.4 Score=32.38 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=47.2
Q ss_pred hhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 020534 86 SISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQE 145 (325)
Q Consensus 86 sisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~ 145 (325)
-+.++..++|+.|..|+==+..||.-|-..++--+.+..++..+..-+..++.+.+++..
T Consensus 30 ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~ 89 (120)
T 3i00_A 30 QLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEK 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344778899999999999999999999999988888899999888877777555554433
No 13
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.76 E-value=11 Score=31.97 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred hHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHh
Q 020534 104 DMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEK 160 (325)
Q Consensus 104 D~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ek 160 (325)
.+-.|=.+||+ |.+.--..-.+.+....-...|+-++.++..+|+.+..+..+|+--
T Consensus 75 ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 75 EVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678995 6666666666777788888899999999999999999998888753
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.48 E-value=34 Score=36.34 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020534 122 NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 122 t~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
...++..+..-+..++..+ ++.+..|+++|..|+..++.-
T Consensus 1003 ~~ke~~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1003 TQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555333 377788888888887776664
No 15
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=64.64 E-value=31 Score=26.03 Aligned_cols=59 Identities=25% Similarity=0.299 Sum_probs=43.6
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020534 96 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 96 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
|||+|+|---.+||.++-|+..-... +-..+...|..++.+++.++.-+.+...+..+|
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998889999999888765433 335567777788888888877777666665555
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.22 E-value=13 Score=37.81 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=46.8
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020534 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMA-ELRYQMTSLLEEECKRRACIEQASLQRIAELETQ 308 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMA-ELRYQmTglLEEEcKRRaCIEQASlQrIaELEAQ 308 (325)
||..++++++-...-+.+++++++.||..--.++ +-+.-..|++ +||+++.-| +++. ..|. ++|+-|++.
T Consensus 69 LKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyL-KekV-----dnQl--snIrvLQsn 139 (562)
T 3ghg_A 69 LKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVL-KRKV-----IEKV--QHIQLLQKN 139 (562)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHH-HHHH-----HHHH--HHHHHHHHH
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHH-HHHH-----HHHH--HHHHHHHHH
Confidence 3445555554445556778999999986555555 6677888888 999998754 3333 3444 666666655
Q ss_pred H
Q 020534 309 I 309 (325)
Q Consensus 309 i 309 (325)
|
T Consensus 140 L 140 (562)
T 3ghg_A 140 V 140 (562)
T ss_dssp H
T ss_pred H
Confidence 5
No 17
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=63.06 E-value=53 Score=25.73 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=13.4
Q ss_pred hhhhHHHhhhhhhhhhhhhhhhhhhhhh
Q 020534 7 IDYLQDQLNARNEEVYSLSEHVHSLELK 34 (325)
Q Consensus 7 IDYLqDQLn~Rn~Evn~l~EHih~LElK 34 (325)
|.+|.+.+..-...+..+...+..++-+
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~ 35 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAEDR 35 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444444444433
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.97 E-value=56 Score=26.07 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=44.2
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020534 96 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 96 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
+||+|++---.+||.++-|+..-... +-..+...|..++.+++.+..-+.+...+..+|
T Consensus 50 ~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 50 AEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67888888888999999888765443 334567778888888888888777766666655
No 19
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=58.32 E-value=51 Score=24.00 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHH
Q 020534 105 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELK 158 (325)
Q Consensus 105 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ 158 (325)
++.||+.+++..++-..-..+-++....+..+.-|....+++|+.|+-....+.
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456788888777766643335556666666666777777888887776555443
No 20
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.63 E-value=64 Score=25.83 Aligned_cols=59 Identities=22% Similarity=0.153 Sum_probs=42.7
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020534 96 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 96 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
+||+|++---..||.++-|+..-... +-..+...|..++.+++.++.-+.+...+..+|
T Consensus 52 ~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 52 IELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788887778899888888764433 334566777888888888887777766666655
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.47 E-value=1e+02 Score=26.74 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhcccc-----ccccchhhhhhhHHHHHHHH
Q 020534 38 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSAL-----ESQCEIESLKIDMIALEQTC 112 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tL-----eSQcEIESmKLD~~aLEQ~l 112 (325)
..+++.++..++..+-.-..+---+=.++...+.++....-.|++.+....+++- .-+=||++++..+..||-.+
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444445556667777788888888888888877762 12357888888888888888
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhHh
Q 020534 113 VEAKKVHKENVQEKARMNSLIKELEVRTQD 142 (325)
Q Consensus 113 fdA~k~q~et~~ek~~m~~~i~Elq~q~q~ 142 (325)
.+++.--++.-..-+.....+.+++..+..
T Consensus 114 le~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 114 ENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765555544444444444444444433
No 22
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=55.02 E-value=11 Score=29.22 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhh
Q 020534 141 QDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDR 184 (325)
Q Consensus 141 q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ed~ 184 (325)
|.+.+++..|-.+|.+||+-+.-+|..-|.=+.....|.++.-+
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQke 47 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQRE 47 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67888899999999999999999998888888888888876543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.43 E-value=1.5e+02 Score=27.58 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=12.7
Q ss_pred HHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020534 136 LEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 136 lq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
++-+.++=++..+.+++++.+++.++...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 33333333344444445555555444443
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=51.64 E-value=75 Score=26.58 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHH
Q 020534 105 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQK 174 (325)
Q Consensus 105 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~ 174 (325)
|..||..|=+|+.+-+++-.--+-..+-+.-++..+..|.+-.+..+..+++|.+-|..-..|.+.+-.+
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4578999999999999998888888899999999999999999999999999999999887777765433
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.53 E-value=85 Score=25.93 Aligned_cols=51 Identities=25% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020534 113 VEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 113 fdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
|.++.-.+.-.++...+..-+..|.-.+-.++.-++.+.+++.+|++++..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444445555555555555555555555555444
No 26
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=46.09 E-value=18 Score=25.78 Aligned_cols=18 Identities=61% Similarity=0.717 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 020534 242 CEYELLVKQLKEELRAEK 259 (325)
Q Consensus 242 ~eyE~LvkQLKeELreEK 259 (325)
.+-+-+|++|++|||-|-
T Consensus 4 ~ere~~i~~LreeLR~EE 21 (43)
T 2l2l_A 4 EERERMIKQLKEELRLEE 21 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999999764
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.74 E-value=64 Score=25.73 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 020534 38 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 117 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 117 (325)
++.+...|+.-.+.|..++++--=+=.-+++.+.+|+.--.....||.+|..+--....++..+.--+..||..|-.+
T Consensus 17 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~-- 94 (129)
T 3tnu_B 17 YEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA-- 94 (129)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 344556666666667666666444444556677777766667777887777655555556666666666677666544
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 020534 118 VHKENVQEKARMNSLIKELE 137 (325)
Q Consensus 118 ~q~et~~ek~~m~~~i~Elq 137 (325)
++.|...+.||+
T Consensus 95 --------r~e~~~ql~EYq 106 (129)
T 3tnu_B 95 --------KQDMARLLREYQ 106 (129)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHH
Confidence 456666667765
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.76 E-value=60 Score=26.02 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 020534 38 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 117 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 117 (325)
++.+...|+.-.+.|..++++--=+=.-+++.+.+++.---....||.+|..+--....++..+.--+..||..|-.+
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~-- 96 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL-- 96 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445566666667777777766554555566777777766666777887777665555566666666677777766544
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 020534 118 VHKENVQEKARMNSLIKELE 137 (325)
Q Consensus 118 ~q~et~~ek~~m~~~i~Elq 137 (325)
++.|...+.||+
T Consensus 97 --------r~em~~ql~EYq 108 (131)
T 3tnu_A 97 --------RCEMEQQNQEYK 108 (131)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHH
Confidence 345666666665
No 29
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=41.89 E-value=1.1e+02 Score=23.16 Aligned_cols=61 Identities=10% Similarity=0.259 Sum_probs=42.8
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhHH-------HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020534 97 EIESLKIDMIALEQTCVEAKKVHKENVQ-------EKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 97 EIESmKLD~~aLEQ~lfdA~k~q~et~~-------ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
+|+.++-+|..|.+.+-.-++.+...+. -+.+|+.++.+........+.-|+.|+..|..+
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 80 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777766666666655442 456778888887777777777777777777664
No 30
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.36 E-value=84 Score=27.03 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 020534 264 EEAEDLAQEMAELRYQMT 281 (325)
Q Consensus 264 EEAEDLtQEMAELRYQmT 281 (325)
..+..|++||++||-++.
T Consensus 113 akI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777776654
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.24 E-value=1.3e+02 Score=22.96 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020534 108 LEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 108 LEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
|.-.+-...+.-.+--..+..+..-...|+.|+.+|++....|.+...+|..++.-
T Consensus 26 lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 26 MKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444555556666899999999998888888877654
No 32
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.78 E-value=1.6e+02 Score=24.32 Aligned_cols=50 Identities=34% Similarity=0.463 Sum_probs=29.4
Q ss_pred HHHHhHHHH--HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020534 232 EKIKGMSLQ--ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQI 309 (325)
Q Consensus 232 ~kme~Ms~q--i~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASlQrIaELEAQi 309 (325)
+.+.+|||| |++|=.|-+.+ +.+..|..-||.+ ...+-.||.+|++.|
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~---------------s~le~e~~rlr~~---------------~~~~~~~v~eLe~ev 74 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSL---------------SRMEDENNRLRLE---------------SKRLDARVRELELEL 74 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---------------hccchhhHHHHHHHH
Confidence 678899998 56665544332 2233344444443 233457888888877
Q ss_pred Hh
Q 020534 310 EK 311 (325)
Q Consensus 310 ~k 311 (325)
.+
T Consensus 75 er 76 (104)
T 3s9g_A 75 DR 76 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 33
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=38.61 E-value=1.1e+02 Score=23.81 Aligned_cols=56 Identities=32% Similarity=0.474 Sum_probs=41.9
Q ss_pred HHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhcc
Q 020534 134 KELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNF 200 (325)
Q Consensus 134 ~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~ 200 (325)
+||..++..-|+-|+-|+.=.-.||.||..+ -++--+.++.+ .+.|.+++.++++.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKY----telnKKLe~~~-------~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKY----VDITKKLEDQN-------LNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHhhhhhHHHHhhc
Confidence 6888999999999999999999999998775 34444444444 66677777777763
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.47 E-value=1.5e+02 Score=24.49 Aligned_cols=50 Identities=30% Similarity=0.357 Sum_probs=31.3
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 020534 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL 283 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTgl 283 (325)
++...+.+..++.+++.=+.-||.+|- .++...+.+.+|..+|+-.+..+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~----~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELI----AAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665 45566677777777777766543
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=36.45 E-value=1.4e+02 Score=22.86 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.5
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHH
Q 020534 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEE 287 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEE 287 (325)
+|.||..|-.....+.+-+.++...++.. ...++.+-+|++.|..+|.+ ||.+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~----e~~~~~~E~ei~sL~kKiq~-lE~e 59 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQA----EDRCKQLEEEQQGLQKKLKG-TEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHH-HHHH
Confidence 47888888888888888888877766653 45567788899999999864 4444
No 36
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.16 E-value=1.4e+02 Score=22.92 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020534 120 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 120 ~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
+++-..|..|.+-|..++.++.+++.-=..+..+.+.+.+-|++-
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345567889999999999999999999999999999999999883
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.92 E-value=84 Score=25.71 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=37.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHhh
Q 020534 237 MSLQICEYELLVKQLKEELRAE---KFKAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 237 Ms~qi~eyE~LvkQLKeELreE---KlKAKEEAEDLtQEMAELRYQmTg 282 (325)
-.+-|.+|+.-|.+|.-||-+. |-+|..|.++|-.|++.||-+.+.
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~ 86 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRED 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456778888888888888764 678999999999999999887763
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=34.34 E-value=1.6e+02 Score=22.81 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhH
Q 020534 120 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIE 176 (325)
Q Consensus 120 ~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~ 176 (325)
+++-..|..|.+-|..++.++.+++.-=..+..|.+.+.+.|++.=....+|+|.+.
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999999984333334455443
No 39
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.03 E-value=1e+02 Score=30.37 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhh
Q 020534 261 KAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 261 KAKEEAEDLtQEMAELRYQmTg 282 (325)
|++++|+.|-.||++|+-++..
T Consensus 68 ~~~~~~~~l~~~~~~l~~~i~~ 89 (485)
T 3qne_A 68 KAKEDAKDLIAEKEKLSNEKKE 89 (485)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHH
Confidence 5678899999999999866654
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.37 E-value=2.9e+02 Score=27.03 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 020534 268 DLAQEMAELRYQMTSLLEEECKRRACI 294 (325)
Q Consensus 268 DLtQEMAELRYQmTglLEEEcKRRaCI 294 (325)
|+.-+|..|=-.| +++||+|-
T Consensus 145 ~q~~kiqRLE~~I------d~c~~~C~ 165 (390)
T 1deq_A 145 DQLVDMKRLEVDI------DIKIRSCK 165 (390)
T ss_pred HHHHHHHHHHHHH------HHHhcccc
Confidence 3344444444444 78888884
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.69 E-value=2.3e+02 Score=24.46 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=44.3
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH----HHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020534 97 EIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLI----KELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 97 EIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i----~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
.|.+++-..+.|++.+-+= ++.+.+|++....+ .-++.++--++.-...|.+||++|=+++-.
T Consensus 69 ~I~~L~~El~~l~~ki~dL----eeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRL----KEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888877653 34555666544443 457777788888888899999888665543
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.37 E-value=1.3e+02 Score=23.51 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020534 131 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
.++..|+-.+|.|=.+|.-|..++.+|+++-.+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999987663
No 43
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=28.90 E-value=1.9e+02 Score=21.92 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=51.3
Q ss_pred ccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHH
Q 020534 36 VDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEA 115 (325)
Q Consensus 36 ~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA 115 (325)
...++||.++.+.-.+++.-|..+.-++.+++.. +.|.=....|++-+. . .+ -+..+...+-.|
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~----------~~~~~~~~~~~~~~~-r-~~----~l~~I~~~~~~~ 74 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKL----------ATEYMSSARSLSSEE-K-LA----LLKQIQEAYGKC 74 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHTCCSCCCHHH-H-HH----HHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHCCCCChhh-h-HH----HHHHHHHHHHHH
Confidence 3567899999999999999998888888887653 222211122222111 0 01 124556666667
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 020534 116 KKVHKENVQEKARMNSLIKELE 137 (325)
Q Consensus 116 ~k~q~et~~ek~~m~~~i~Elq 137 (325)
+.+++|-++--.+|-.+|.-+-
T Consensus 75 ~~l~dEKv~lA~~~~dlvdkhi 96 (104)
T 4afl_A 75 KEFGDDKVQLAMQTYEMVDKHI 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666555555554443
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.88 E-value=3.5e+02 Score=24.60 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 020534 38 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 117 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 117 (325)
+.++.++++.+-++.+... +|.=.-++|+.+=.++|+...++++=- + +-.+-+++|- .-.|+++
T Consensus 375 l~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~-~~~~~~~ 438 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQA---------A-----TANHTVMALM-ASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-----HHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHh---------h-----hcchhHHHHH-HHHHHHH
Confidence 3445555555555544333 566666677888888888888887754 1 2245567774 4457777
Q ss_pred hhhh
Q 020534 118 VHKE 121 (325)
Q Consensus 118 ~q~e 121 (325)
-|++
T Consensus 439 ~~~~ 442 (471)
T 3mq9_A 439 AQGQ 442 (471)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 45
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.14 E-value=2.5e+02 Score=22.65 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhh
Q 020534 38 MEILQDKVGQLEEELRRSDSECLLLMEELQS 68 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~ 68 (325)
.+++.+++.+|..++..-+.++--|.++|..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666666666655555556665543
No 46
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.15 E-value=2.3e+02 Score=21.95 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=40.6
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 020534 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECK 289 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcK 289 (325)
+|.||..|-.....+.+-+.++...++. +...++.+-+|++.|...|.+ ||.+.-
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~----~e~~~~~~E~Ei~sL~kk~~~-lE~eld 61 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKA----AEERSKQLEDDIVQLEKQLRV-TEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHH-HHHHHH
Confidence 4678888888888888877777766654 345567788899999988886 466544
No 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.83 E-value=9.1e+02 Score=29.28 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHH
Q 020534 101 LKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 179 (325)
Q Consensus 101 mKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~l 179 (325)
.+-.+..+|..+-.|+.--.+.-+.-+.++..|..|+.+...|..-.+.|+.+......|+..+++=+.-+...-..|-
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 3445556666666666655555555556666666666666666666666666666666666666544444444444454
No 48
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=24.75 E-value=30 Score=23.98 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHHH
Q 020534 260 FKAKEEAEDLAQEMA 274 (325)
Q Consensus 260 lKAKEEAEDLtQEMA 274 (325)
+.-.++|||++||.-
T Consensus 33 ~~~~~~aeD~vQe~f 47 (87)
T 1h3l_A 33 TRNPADAEDLVQETY 47 (87)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHH
Confidence 346789999999964
No 49
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.53 E-value=93 Score=24.66 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020534 120 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 120 ~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
.++++||.++-..|..++ +-|..|..+|++|++.-..
T Consensus 34 ~eaL~EN~~Lh~~ie~~~-------eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKD-------SEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 456788888877776664 3477888888888876544
No 50
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.42 E-value=2.2e+02 Score=20.51 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=27.3
Q ss_pred HHHHhHHHHHhhHHHHHHHHHH---HHHHHhhhhhhHHHH
Q 020534 232 EKIKGMSLQICEYELLVKQLKE---ELRAEKFKAKEEAED 268 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQLKe---ELreEKlKAKEEAED 268 (325)
.+|..++.++...-.=|.||+. -||-+--.||+||..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888887 455555578888764
No 51
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.04 E-value=2.5e+02 Score=20.13 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred CchHHHHHhHHHHHhhHHHHHHHHHHHH-----------HHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020534 228 ANLKEKIKGMSLQICEYELLVKQLKEEL-----------RAEKFKAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 228 ~~l~~kme~Ms~qi~eyE~LvkQLKeEL-----------reEKlKAKEEAEDLtQEMAELRYQmTg 282 (325)
++|-..|.+|- .+||.++.+-+.|+ ...--+--++....-.|+.|||.++.+
T Consensus 5 ~DL~~il~eiR---aQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~ 67 (77)
T 3trt_A 5 PDCTAAMRDVR---QQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQS 67 (77)
T ss_dssp CCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555553 35666666655554 333333334444445677777777654
Done!