BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020535
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/283 (79%), Positives = 249/283 (87%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/283 (79%), Positives = 249/283 (87%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 132/234 (56%), Gaps = 3/234 (1%)
Query: 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIP-KLGALRVAGG 103
A D + +L++EE+ +R VR +++ I P +A ++E E P + +LG L + G
Sbjct: 20 ADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGM 79
Query: 104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
+KGYGC G S +A E+ D+ + + V SLAM I GS+EQK ++LP +
Sbjct: 80 HLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDM 139
Query: 164 AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
A + I C+ LTEP +GSD + + T AT+ WIL G K WI N + ADV V++AR T
Sbjct: 140 ASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWAR--T 197
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
I G++V D PG T I++K+ LR +++L V +PD RLPG S
Sbjct: 198 DEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSL 251
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
D+Y +DLLT EE+ V+ R +EKE P + ++WE+ FP H+IP+ L G T+
Sbjct: 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62
Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
YG G S + E+ RVD+ +F+ V SSL M I GSEEQK+++LP LA+
Sbjct: 63 PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTT 224
+ C+ LTEP GSD T + EG W+L G K WI N A + VI+A++
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKD-EG 181
Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
++ G+LV D PG +++ K+ LR +++L++V VP+ RLP
Sbjct: 182 GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLP 229
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Query: 37 PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
P+ K + + D LL +E+ + VR+ ++ + P + ++E A P + + G
Sbjct: 8 PSKKSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFG 67
Query: 97 ALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
L V G ++GYGC G + +A E+ D+ +F+ V SL+M +I GSEEQK
Sbjct: 68 NLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQK 127
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
++LP LA + I C+ LTEP +GS+ + + T A + WIL G K WI N ADV
Sbjct: 128 NEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVAT 187
Query: 217 IFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
++A+ T + I G+LV D PG T +I K+ LR +++L V +P +LP
Sbjct: 188 VWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLP 241
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
++ LT++E +R R ++ + P + F +I ++G L V G TIKGYGC
Sbjct: 12 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G S + E+ RVD+ + + V SSL M I GSEEQ+QKYLP LA+ +
Sbjct: 72 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
C+ LTEP GSD S++ T A + L G K WI NS AD+ V++AR I
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
G+L++K GL+ +I+ K LR G I++ V VP+E+ LPG +S
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
++ LT++E +R R ++ + P + F +I ++G L V G TIKGYGC
Sbjct: 12 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G S + E+ RVD+ + + V SSL M I GSEEQ+QKYLP LA+ +
Sbjct: 72 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
C+ LTEP GSD S++ T A + L G K WI NS AD+ V++AR I
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
G+L++K GL+ +I+ K LR G I++ V VP+E+ LPG +S
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
++ LT++E +R R ++ + P + F +I ++G L V G TIKGYGC
Sbjct: 10 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 69
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G S + E+ RVD+ + + V SSL M I GSEEQ+QKYLP LA+ +
Sbjct: 70 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
C+ LTEP GSD S++ T A + L G K WI NS AD+ V++AR I
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
G+L++K GL+ +I+ K LR G I++ V VP+E+ LPG +S
Sbjct: 189 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 3/235 (1%)
Query: 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI- 105
D D L +E+ VR + ++AP + E + + ++G + + G TI
Sbjct: 14 DPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 73
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
+ YG PG + E+ RVD+ + + V SSL M+ I GS+ QK+KYLP LA
Sbjct: 74 EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 133
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTT 223
I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS ADV V++A+
Sbjct: 134 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDG 193
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
++I G++++K GL+ I K+GLR G+I+L + FVP+E+ LP V +
Sbjct: 194 RDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 248
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 3/235 (1%)
Query: 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI- 105
D D L +E+ VR + ++AP + E + + ++G + + G TI
Sbjct: 11 DPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 70
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
+ YG PG + E+ RVD+ + + V SSL M+ I GS+ QK+KYLP LA
Sbjct: 71 EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 130
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTT 223
I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS ADV V++A+
Sbjct: 131 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDG 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
++I G++++K GL+ I K+GLR G+I+L + FVP+E+ LP V +
Sbjct: 191 RDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 245
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 3/235 (1%)
Query: 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI- 105
D D L +E+ VR + ++AP + E + + ++G + + G TI
Sbjct: 10 DPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 69
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
+ YG PG + E+ RVD+ + + V SSL M+ I GS+ QK+KYLP LA
Sbjct: 70 EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 129
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTT 223
I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS ADV V++A+
Sbjct: 130 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDG 189
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
++I G++++K GL+ I K+GLR G+I+L + FVP+E+ LP V +
Sbjct: 190 RDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 244
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 120/239 (50%), Gaps = 9/239 (3%)
Query: 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
+EE+ V RE ++ E+AP AE FP+ ++ KL V G + + YG G S
Sbjct: 9 AEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68
Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
A + IA D + + + H+SLA I L GSE QK+ +LP LA + W LT
Sbjct: 69 RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT 128
Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR-------NTTTNQIN 228
EP GSDA+AL T A KVEGGW L G K++I + A V V+ AR I+
Sbjct: 129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGIS 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEG 286
+ + GL V + E K+GL ++L+ +FVP+E L F D +V +G
Sbjct: 189 AFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDG 247
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 6/226 (2%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
L Q +R R+ EKE+ PI A+ ++ FP + K+G L + + + G
Sbjct: 10 LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 69
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
+IA+ EI+R AS + V++SL + I GS +QKQ+++ + I C+A
Sbjct: 70 DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 129
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
L+EP GSDA A +TTA + W+L G K WI NS A V+FA R+ I+ +
Sbjct: 130 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAF 189
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGV 274
LV PGLT+ K E+K+G+R +++ + +P E+ L PG+
Sbjct: 190 LVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGM 235
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 3/218 (1%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
LT E++ V VR + + P+ EY KAE+P+ + L L + G T + +G G
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL 62
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
A+A+ E+A D S + + V S L + GSE QK++YL LA+ I +
Sbjct: 63 DSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFC 122
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233
LTEP GSDA +L A +V+GG++L G K WI ++ A + V+ AR T I+ +LV+
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLVE 180
Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
K PGL+ + E K+GL ++ L++VFVP+E+ L
Sbjct: 181 KGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
L E A+R +R EKEIAP AE EKA FP + L + + + + YG G
Sbjct: 19 LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGA 78
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
I I E+ARVD S S V+ L + + L GSEE K++ LP++A +A +A
Sbjct: 79 DSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYA 137
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWI---GNSTFADVLVIFARNTTTNQINGY 230
L+E GSDA+++ T A WIL G K WI G ST+ V+ + + N I+ +
Sbjct: 138 LSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAF 197
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
+V KD G TV E K+G++ ++ + +P DR+ G
Sbjct: 198 MVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG-DRIIG 239
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 6/227 (2%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
L Q + R+ EKE+ PI A+ ++ FP + K+G L + + + G G
Sbjct: 6 LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
AIA+ EI+R AS + V++SL + I GS+EQKQ ++ + I C+A
Sbjct: 66 DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
L+EP GSDA A +TTA W+L G K WI N+ A V+FA R I+ +
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVN 275
LV PGLT+ K E+K+G+R +++ + +P + L PG+
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG 232
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGGTI-KGYGCP 111
+SE + + + + E+ P + EY E+ EF ++ + G L + G + + YG
Sbjct: 33 FSSEHKXIAKTTEDFIVNEVLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
G +A+ + +R T H + L I L G+EEQK+KYLP LA +A
Sbjct: 92 GLDKVSSALIAEKFSRAGGFAITH-GAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 172 WALTEPAYGSDASALNTTAT-KVEG-GWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
+ALTEP GSDA TTA EG ++L G+K+WI NS FADV +++A+ +
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK-IDGEHFSA 209
Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
++V+KD G++ + E K G++ ++L+ VP E+ L
Sbjct: 210 FIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLL 251
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 5/221 (2%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGH 113
T EE ++ V++ +++IAP+++ E ++ VI L + G + YG G
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
S + I E+A+VDAS + F + ++L I G+EEQK YLP L + +
Sbjct: 89 SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT---NQINGY 230
L+E GSD+ AL T A K ++L G K WI ++ A + ++ A T I +
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSF 207
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
LV +D PGL + K ENK+GLR + + V VP+ + L
Sbjct: 208 LVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANIL 248
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 5/225 (2%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
D LT E++ ++ R ++ I P+ EY EK E P+ VI KL + + I + YG
Sbjct: 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G + I E+A T I + S L + + L G+EEQK+++L L + +
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
A +AL+EP GSDA+AL T A + ++L G K WI N A+ +V+FA + G
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKG 179
Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
+V++ PG KI K+G R +++ + V VP E+RL
Sbjct: 180 VVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 37 PASKFPPCASDYYQFDDLLTSEEQAVRMKV-RECMEKEIAPIMAEYWEKAEFPFHVIPKL 95
P S P A D LL S+E A +++ RE +K + PI+ + + +P V +L
Sbjct: 2 PGSMIHPMA-----VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQL 56
Query: 96 GALRVAGGTI-----KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
GA G + + +G G + EIA AS + + VHS L+ + +
Sbjct: 57 GA----AGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVF 111
Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
G+EEQK+++LP + I ++L+EP GSDA+AL AT +GG+++ G K WI +
Sbjct: 112 GTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171
Query: 211 FADVLVIFARNTTTNQ-INGYLVKKDAPGLTVTKIENKIGLRIV 253
AD +FAR ++ ++ +LV D PGL+ K E K+GL V
Sbjct: 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAV 215
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
H+S+ L + G+EEQK+KYLP LA IA + LTEP GSDA A T AT E G
Sbjct: 113 HTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKH 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNG 256
+IL G K+WI N+ FA + +FA+ +LV++D PGL+ E K+G++
Sbjct: 173 YILNGVKQWISNAGFAHLFTVFAK-VDGEHFTAFLVERDTPGLSFGPEEKKMGIKASSTR 231
Query: 257 DILLKKVFVPDEDRL 271
++L+ V VP E+ L
Sbjct: 232 QVILEDVKVPVENVL 246
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 8/220 (3%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTIK-GYGCP 111
L+ E++ +R + + +++ +AP E EF +LG L V G T YG
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
G + + EI+R + HS+L + + G+E QK+KYLP L I
Sbjct: 73 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 172 WALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT-----TTNQ 226
A++EP GSD ++ A K +IL G K WI N ADVL+++A+ +
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
I ++V+K PG + +K +K+G+R +++ + +P
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIP 232
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 11/229 (4%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH-VIPKLGALRVAGGTI-KGYGCPG 112
L+ E Q ++ +VR + K+I P ++ + FP+ + +G L G I + YG G
Sbjct: 5 LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
A I EIAR ++ + + TI GSE K+KY+P L+ +
Sbjct: 65 MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQI 227
+ +TEP GSD A+++TA W+L G K WI N+ ADVL+ +A + + +
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGL 184
Query: 228 NGYLVK-KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PG 273
+ ++++ ++ PG+ + +E K+G G++ L V VP E+ L PG
Sbjct: 185 SAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPG 232
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 18/250 (7%)
Query: 31 AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
A PQ P S F F+ LT +++ + R+ +EI P+ AEY E+P
Sbjct: 2 AVPQCEPGSGF--------SFE--LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP 51
Query: 91 VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
++ + L + I + +G G + + + E+A T I ++ L + + +
Sbjct: 52 LLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLII 110
Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
G+ +Q++KYL + + + + +TEP GSD + + T A K +I+ GQK WI N
Sbjct: 111 GGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170
Query: 210 TFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKV 263
A+ + AR+ + G++V+ D PG+ + + E +G R I+ + V
Sbjct: 171 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDV 230
Query: 264 FVPDEDRLPG 273
VP E+ L G
Sbjct: 231 RVPKENVLTG 240
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 4/203 (1%)
Query: 72 KEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHSVTGAAIAIAEIARVDA 130
+E+AP MAE+ +K FP V+ K L G I+ G G S ++ +A
Sbjct: 36 REMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCT 95
Query: 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 190
S + +I +H+ A + + G+EEQ+ K+ P L + A + LTEP GSDA++L T+A
Sbjct: 96 STTAYISIHNMCAWMIDSF-GNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSA 154
Query: 191 TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN--QINGYLVKKDAPGLTVTKIENKI 248
K +IL G K +I + +D+ V+ R I+ +V+K PGL+ K E K+
Sbjct: 155 KKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKV 214
Query: 249 GLRIVQNGDILLKKVFVPDEDRL 271
G ++ + VP +R+
Sbjct: 215 GWNSQPTRAVIFEDCAVPVANRI 237
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F T +++ + R+ +EI P+ AEY + E+P +I + L + I + G
Sbjct: 37 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 96
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G A + E+A T I +SL + I + G+++QK+KYL + + +
Sbjct: 97 GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 155
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 156 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 215
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
G++V+ D PG+ + + E +G R I+ + V VP E+ L G
Sbjct: 216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 265
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F T +++ + R+ +EI P+ AEY + E+P +I + L + I + G
Sbjct: 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G A + E+A T I +SL + I + G+++QK+KYL + + +
Sbjct: 72 GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
G++V+ D PG+ + + E +G R I+ + V VP E+ L G
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 240
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F T +++ + R+ +EI P+ AEY + E+P +I + L + I + G
Sbjct: 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G A + E+A T I +SL + I + G+++QK+KYL + + +
Sbjct: 72 GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
G++V+ D PG+ + + E +G R I+ + V VP E+ L G
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 240
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
H S+ I L G++ QK+KYLP LA T+A + LTEP+ GSDA+++ T+A G
Sbjct: 133 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 192
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
+ L G K WI N AD+ +FA+ T+ +I ++V++ G+T E K+
Sbjct: 193 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 252
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
G++ ++ V VP E+ L V S
Sbjct: 253 GIKASNTAEVFFDGVRVPSENVLGEVGS 280
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
H S+ I L G++ QK+KYLP LA T+A + LTEP+ GSDA+++ T+A G
Sbjct: 113 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
+ L G K WI N AD+ +FA+ T+ +I ++V++ G+T E K+
Sbjct: 173 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 232
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
G++ ++ V VP E+ L V S
Sbjct: 233 GIKASNTAEVFFDGVRVPSENVLGEVGS 260
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 8/230 (3%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F LT +++ + R+ +EI P+ AEY E+P ++ + L + I + +G
Sbjct: 2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G + + + E+A T I ++ L + + + G+ +Q++KYL + + +
Sbjct: 62 GLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLM 120
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 180
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
+ G++V+ D PG+ + + E +G R I+ + V VP E+ L G
Sbjct: 181 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 8/225 (3%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
LT +Q + EK++AP + E K + +I +L +L + G + G G
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G V +A+ E+A+ DA + + SL I G+E QK+K+L L + +
Sbjct: 65 DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFA---RNTTTNQ 226
+ LTEP G+DAS T ATK + G + L G K +I N AD+ ++FA ++ +
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
I ++++ PG T K E+K+G+ Q +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 21/225 (9%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP--- 111
L E R R+ +EKE P ++ ++ P K+G G+ CP
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGE--------NGFLCPWVD 61
Query: 112 ----GHSVTGA-AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
G + A ++ I E S I +H+ + IA G+EEQKQK+LP
Sbjct: 62 EKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTG 121
Query: 167 NTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
I A+TEP GSD + ++TTA K +I+ GQK +I N AD++V+ + +
Sbjct: 122 ELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAK 181
Query: 227 -----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
I+ +V++D PG T + K+GL ++ + VP
Sbjct: 182 PPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVP 226
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
Query: 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP---- 111
T E +A+ R +E+EIAP +AE+ E P + L A V + G G P
Sbjct: 30 TPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAAEVG---LLGIGFPEEVG 84
Query: 112 ---GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL-PSLAQLN 167
G+++ A + A +A ++ L +A+ IA GS+ ++Y+ P+LA
Sbjct: 85 GSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAG-K 143
Query: 168 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTN 225
I +TEP GSD + L T A + +++ G K +I + AD + R
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYG 203
Query: 226 QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
++ ++ K++PG V++ +K+G R ++ V VP ++ + NS
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENS 254
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 12/219 (5%)
Query: 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
T+E +A+R VR E+E+ P A WE+A E P + K L + G
Sbjct: 27 TAEREALRKTVRAFAEREVLP-HAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL-----CGSEEQKQKYLPSLAQLNTI 169
+ I E S V++SL IA+ G + Y+ + I
Sbjct: 86 DGADPVVICEEMHYAGSPGG---VYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKI 142
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTNQI 227
A+TEP GSD L T A +++ G K +I + AD +V AR +
Sbjct: 143 GALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGV 202
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
+ +V K PG VT+ +K+G R ++ V VP
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVP 241
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 126 ARVDASCSTF--ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
A V + CS+ ++ +A T+ G Q+ +L L +A +E GSD
Sbjct: 62 AHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFSERQAGSDL 120
Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 243
SA+ T +++G K W + +AD LV+F + +V D PG+ V +
Sbjct: 121 SAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV-VVVPADTPGVRVER 179
Query: 244 IENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
+ G R + D+ L +V VP L G
Sbjct: 180 VPKPSGCRAAGHADLHLDQVRVPAGAVLAG 209
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
F +H + + I G+++Q++K+LP ++ I C+A TE +GS+ L TTAT
Sbjct: 117 FTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDP 176
Query: 192 ----KVEGGWILEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------- 233
V L K W G ST A V++AR T + +NG++V+
Sbjct: 177 QTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGKDYGVNGFIVQLRSLEDH 233
Query: 234 KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
K PG+TV I K G + NG + V +P + L V+ K
Sbjct: 234 KPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGK 285
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGWILEGQ 202
M + L GSEEQK+++L L Q N +C+ +TEP SDA+ + + + E +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 203 KRW---IGNSTFADVLVIFARNTTTN-----QINGYLVKKDAPGLTVTK 243
K W GN + ++ R T+ Q + LV + PG+ + +
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIR 231
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
++ +H + + I G+EEQ++K+L ++ I C+A TE +GS+ L TTAT
Sbjct: 98 YVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDP 157
Query: 192 KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVKKDA---- 236
K + I K W G ST A V++AR T + I+G++V+ +
Sbjct: 158 KTDEFVIHTPTQTASKWWPGGLGKVSTHA---VVYARLITNGKDYGIHGFIVQLRSLEDH 214
Query: 237 ---PGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
P +TV I K+G + NG ++ V +P + L
Sbjct: 215 SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
YG G A + EIA D S H + A + I L GS+EQ++ +AQ N
Sbjct: 86 YGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPM-IELIGSQEQEEHLYTQIAQNN 144
Query: 168 TIACWALTEPAYGSDASALN--TTATKVE-GGWILEGQKRWIGNSTFADVLVIFARNTTT 224
W + +++ L+ +AT E GG++L G K + + +D+L +F
Sbjct: 145 ----WWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDD 200
Query: 225 NQINGYLVKKDAP----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
+ G ++ P G+T IG+R +G V V ++ L N+F
Sbjct: 201 SPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAF 257
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGG-WILEGQKRWIGN 208
GS+EQK+ +L L + + + + +TEP SDA+ + TA VEG ++ G+K W
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAV-VEGDEVVINGRKWWSTG 183
Query: 209 STFADVLVIFARNTTTNQINGY------LVKKDAPGLTVTKIENKIGL 250
D VI T + Y LV D PG+TV ++ +G
Sbjct: 184 VGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGF 231
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN---QINGYLVKKDAPGLT 240
+A+ T GGW+L G+K + + VI AR T+ ++ +V +D PG T
Sbjct: 150 TAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFT 209
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVP 266
V + +G+R DI+ +P
Sbjct: 210 VLDNWDGLGMRASGTVDIVFDDCPIP 235
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL--AQL 166
G S+ +I + E+ V+ + S I V ++L + + LC S ++K+L +
Sbjct: 67 GGTXESLVHESIILEELFAVEPATSITI-VATALGLXPVILCDSPSLQEKFLKPFISGEG 125
Query: 167 NTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 126 EPLASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 24/195 (12%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTIKG 107
D L++ ++ R + P Y + + F A V+ G +KG
Sbjct: 3 IDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKG 62
Query: 108 YGCPGHSVTG-----AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS 162
P H TG +AI + E V+ S + I + L + I L + + P
Sbjct: 63 QISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPINLAAGPQHAEFLAPF 121
Query: 163 LA-QLNTIACWALTEPAYGSDASALNT------TATKVEGG-WILEGQKRWIGNST---- 210
L+ + + +A +EP G A+AL T ++EG W++ G+K W N
Sbjct: 122 LSGEGSPLASLVFSEP--GGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDF 179
Query: 211 -FADVLVIFARNTTT 224
D+ + R+ TT
Sbjct: 180 KGCDLACVVCRDATT 194
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 18/152 (11%)
Query: 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK----- 192
+H + + T+ + EQ++++ L +A TE +G+ L TTAT
Sbjct: 102 LHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQ 161
Query: 193 --VEGGWILEGQKRWIG----NSTFADVLVIFARNTTTNQINGYLV-------KKDAPGL 239
+ + K W G S A VL ++ ++V K PG+
Sbjct: 162 EFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGI 221
Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
TV I K G + NG + + +P E+ L
Sbjct: 222 TVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTA-TKVEGGWILEGQKRWIGNSTFADVL 215
++ L ++A+ C AL DA + T + GGW+L G+K + + A
Sbjct: 117 ERLLRAMAEGEAAVCGAL------KDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHF 170
Query: 216 VIFARNTTTNQ---INGYLVKKDAPGLTVTKIENKIGLR 251
+ A+ + + +V +DAPGLTV + +G+R
Sbjct: 171 FVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMR 209
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYG 109
S QA M V + K++AP+M WE+ P VI +GA +GG Y
Sbjct: 71 SPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVI-SMGACASSGGMFNNYA 122
>pdb|1VMI|A Chain A, Crystal Structure Of Putative Phosphate Acetyltransferase
(Np_416953.1) From Escherichia Coli K12 At 2.32 A
Resolution
Length = 355
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 82 WEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVT-GAAIA-IAEIARVDA-SCSTFILV 138
E + + +LG R G I+G P H ++ G ++ I E+A V A T +
Sbjct: 282 LEAGNIGYKIAQRLGGYRAVGPLIQGLAAPXHDLSRGCSVQEIIELALVAAVPRQTEVNR 341
Query: 139 HSSLAMLTIALCG 151
SSL L LCG
Sbjct: 342 ESSLQTLVEGLCG 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,673,795
Number of Sequences: 62578
Number of extensions: 379344
Number of successful extensions: 893
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 56
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)