Query 020535
Match_columns 325
No_of_seqs 211 out of 1636
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 2.9E-59 6.2E-64 413.5 15.9 266 54-325 36-309 (398)
2 KOG0138 Glutaryl-CoA dehydroge 100.0 5.6E-58 1.2E-62 398.4 20.4 304 16-324 16-324 (432)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 5.9E-58 1.3E-62 399.3 15.2 266 55-325 41-318 (421)
4 KOG0140 Medium-chain acyl-CoA 100.0 4.2E-57 9E-62 393.8 17.6 267 52-324 25-302 (408)
5 PLN02526 acyl-coenzyme A oxida 100.0 6.5E-53 1.4E-57 403.7 30.2 292 28-325 2-297 (412)
6 PRK09463 fadE acyl-CoA dehydro 100.0 3.1E-52 6.6E-57 418.0 27.5 282 15-325 57-369 (777)
7 cd01151 GCD Glutaryl-CoA dehyd 100.0 4E-51 8.6E-56 388.5 29.5 270 51-325 9-281 (386)
8 PRK13026 acyl-CoA dehydrogenas 100.0 2.1E-51 4.4E-56 410.7 28.2 285 15-325 56-368 (774)
9 TIGR03203 pimD_small pimeloyl- 100.0 8.3E-49 1.8E-53 371.3 26.5 262 54-325 3-275 (378)
10 PRK03354 crotonobetainyl-CoA d 100.0 1.3E-48 2.8E-53 370.6 27.7 267 51-325 1-276 (380)
11 cd01156 IVD Isovaleryl-CoA deh 100.0 1.2E-48 2.6E-53 370.3 27.3 266 55-325 2-275 (376)
12 PRK12341 putative acyl-CoA deh 100.0 1.6E-48 3.4E-53 370.1 27.8 266 51-325 1-277 (381)
13 PLN02519 isovaleryl-CoA dehydr 100.0 1.8E-48 4E-53 372.2 28.0 267 53-324 24-300 (404)
14 cd01162 IBD Isobutyryl-CoA deh 100.0 2.1E-48 4.6E-53 368.5 27.1 265 55-325 1-272 (375)
15 cd01157 MCAD Medium chain acyl 100.0 1.9E-48 4.1E-53 369.2 26.5 265 55-325 1-276 (378)
16 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.5E-48 5.5E-53 367.6 26.9 264 55-325 1-273 (372)
17 cd01161 VLCAD Very long chain 100.0 2.3E-48 5E-53 372.2 26.8 286 17-325 4-303 (409)
18 cd01160 LCAD Long chain acyl-C 100.0 3.4E-48 7.4E-53 366.6 26.6 262 58-325 2-272 (372)
19 PTZ00461 isovaleryl-CoA dehydr 100.0 3.8E-48 8.3E-53 370.7 27.1 265 54-325 36-306 (410)
20 TIGR03204 pimC_large pimeloyl- 100.0 4.4E-46 9.6E-51 354.7 27.8 264 53-325 2-277 (395)
21 cd01158 SCAD_SBCAD Short chain 100.0 4.6E-46 1E-50 352.1 25.8 263 58-325 2-272 (373)
22 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.6E-45 5.6E-50 349.5 25.4 262 59-325 3-291 (394)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 3.7E-44 8E-49 341.5 25.0 266 55-325 5-287 (393)
24 cd01153 ACAD_fadE5 Putative ac 100.0 1.5E-43 3.2E-48 338.7 26.6 252 63-324 2-283 (407)
25 KOG0137 Very-long-chain acyl-C 100.0 7.5E-45 1.6E-49 341.0 16.8 270 49-325 70-357 (634)
26 PLN02636 acyl-coenzyme A oxida 100.0 8.6E-43 1.9E-47 348.9 25.6 272 43-325 49-375 (686)
27 PLN02876 acyl-CoA dehydrogenas 100.0 2.1E-42 4.6E-47 355.9 26.7 268 53-325 400-715 (822)
28 cd01152 ACAD_fadE6_17_26 Putat 100.0 3.2E-42 7E-47 326.8 21.8 257 58-325 2-271 (380)
29 PTZ00456 acyl-CoA dehydrogenas 100.0 1.8E-41 3.8E-46 336.5 25.9 253 57-318 58-346 (622)
30 cd01163 DszC Dibenzothiophene 100.0 2.5E-41 5.4E-46 320.4 24.4 245 66-321 3-253 (377)
31 PLN02312 acyl-CoA oxidase 100.0 2E-39 4.3E-44 324.1 23.5 231 82-320 101-369 (680)
32 cd01154 AidB Proteins involved 100.0 2.1E-38 4.6E-43 303.8 23.1 246 66-325 37-309 (418)
33 PTZ00457 acyl-CoA dehydrogenas 100.0 1.5E-36 3.3E-41 293.6 24.8 239 16-314 19-274 (520)
34 cd01159 NcnH Naphthocyclinone 100.0 6.4E-36 1.4E-40 282.7 18.2 232 73-325 9-260 (370)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.2E-34 2.6E-39 269.2 23.6 220 58-325 2-229 (327)
36 PRK11561 isovaleryl CoA dehydr 100.0 4.2E-34 9.1E-39 278.4 21.9 220 90-325 90-334 (538)
37 KOG1469 Predicted acyl-CoA deh 100.0 8.2E-35 1.8E-39 250.3 13.3 224 95-324 36-278 (392)
38 cd01150 AXO Peroxisomal acyl-C 100.0 4.7E-34 1E-38 284.3 18.9 203 114-321 80-320 (610)
39 PTZ00460 acyl-CoA dehydrogenas 100.0 9E-33 1.9E-37 275.2 17.6 185 136-325 95-318 (646)
40 PLN02443 acyl-coenzyme A oxida 100.0 7.9E-31 1.7E-35 261.7 17.8 182 137-323 100-318 (664)
41 KOG0135 Pristanoyl-CoA/acyl-Co 99.9 1.9E-23 4.2E-28 195.5 13.1 223 90-321 81-342 (661)
42 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 2.7E-20 5.9E-25 146.1 8.7 112 56-167 1-113 (113)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.7 5.1E-16 1.1E-20 150.3 15.9 168 148-325 119-320 (477)
44 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 2.9E-16 6.2E-21 105.6 6.5 52 171-222 1-52 (52)
45 KOG0136 Acyl-CoA oxidase [Lipi 99.6 9E-15 1.9E-19 140.5 11.0 180 136-320 111-323 (670)
46 PF11794 HpaB_N: 4-hydroxyphen 98.5 7.7E-07 1.7E-11 79.5 9.9 118 154-271 123-263 (264)
47 COG2368 Aromatic ring hydroxyl 98.2 5.8E-06 1.3E-10 78.4 9.0 123 150-272 125-276 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 98.2 4.5E-05 9.8E-10 74.5 14.6 119 154-272 136-280 (519)
49 PF00441 Acyl-CoA_dh_1: Acyl-C 93.1 0.068 1.5E-06 43.1 2.5 47 275-325 2-50 (150)
50 PF14749 Acyl-CoA_ox_N: Acyl-c 88.0 0.48 1E-05 37.4 2.9 32 137-168 93-124 (125)
51 PF02084 Bindin: Bindin; Inte 34.7 1.1E+02 0.0023 26.8 5.4 64 84-166 98-163 (238)
52 PF13051 DUF3912: Protein of u 34.3 57 0.0012 21.8 3.0 36 197-232 2-37 (68)
53 cd08816 CARD_RIG-I_1 Caspase a 26.1 1.8E+02 0.004 21.3 4.7 39 57-95 2-40 (89)
54 PF01726 LexA_DNA_bind: LexA D 22.6 2.6E+02 0.0057 19.1 5.1 50 54-103 3-58 (65)
55 PF12584 TRAPPC10: Trafficking 21.6 2.2E+02 0.0048 22.9 5.1 44 192-245 66-114 (147)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-59 Score=413.52 Aligned_cols=266 Identities=32% Similarity=0.476 Sum_probs=255.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 020535 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (325)
Q Consensus 54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~ 132 (325)
.+++.++.+++.+++|+.+.+.|.+.+.|++..+|..+++.+.++|++++ +|++|||.|.+..+++.++|||++.|+++
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 37899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCC
Q 020535 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212 (325)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~A 212 (325)
++++.+|+.+...+|..||+++||++|+|.+ .|+.+++||++||++|||+..+.|+|++++|.|+|||+|.||||+..|
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A 194 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA 194 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence 9999999999999999999999999888875 578899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhh
Q 020535 213 DVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEE 288 (325)
Q Consensus 213 d~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r 288 (325)
++++|++.++. .+++++|+||+++||+++...++++|+|++.++.++|+||+||++++||+. .|+++.+..||.+|
T Consensus 195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR 274 (398)
T KOG0139|consen 195 DWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR 274 (398)
T ss_pred ceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccc
Confidence 99999999864 468999999999999999999999999999999999999999999999995 49999999999999
Q ss_pred H--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 289 T--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 289 ~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+ +++.+| .+|.|+|. +.|+++|.|||++|.+|
T Consensus 275 Igi~Aqmlg-----laQ~c~d~tI~Y~q~R~~FGk~l~d~ 309 (398)
T KOG0139|consen 275 IGIGAQMLG-----LAQGCFDETIPYAQERLQFGKRLLDF 309 (398)
T ss_pred eeehhhhhh-----hhHhHHHhhhHHHHHHHHhcchhhhH
Confidence 9 999999 99999999 99999999999999875
No 2
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-58 Score=398.38 Aligned_cols=304 Identities=37% Similarity=0.557 Sum_probs=292.7
Q ss_pred hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHH
Q 020535 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l 95 (325)
.+..++..++....-.++.+.|.+.+|+..+|++++++.|++|++++++.+|++|++++.|...++.+...||.++..++
T Consensus 16 ~rs~~s~l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem 95 (432)
T KOG0138|consen 16 LRSWVSSLAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM 95 (432)
T ss_pred eeehhhcCchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence 35667788888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEec
Q 020535 96 GALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175 (325)
Q Consensus 96 ~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~t 175 (325)
..+|+++...+.||..|.|...+..+.+|+.|.|.+....+.+|+++++.+|..||+++||++|||.+++|++++||++|
T Consensus 96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT 175 (432)
T KOG0138|consen 96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT 175 (432)
T ss_pred hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence 99999999779999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEeCCE--EEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCcccc
Q 020535 176 EPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIV 253 (325)
Q Consensus 176 Ep~~Gsd~~~~~~~a~~~~~g--~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~ 253 (325)
||++|||+..+.|+|++++.+ |.|||+|.||+|+++||+++|+||...++.+.-|+|+++.+|++...+..++++|++
T Consensus 176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas 255 (432)
T KOG0138|consen 176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRAS 255 (432)
T ss_pred CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeec
Confidence 999999999999999999998 999999999999999999999999987788999999999999999999999999999
Q ss_pred ceeeEEEeeeeeCCCCCcCCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535 254 QNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI 324 (325)
Q Consensus 254 ~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~ 324 (325)
.++.|-++||+||++++|...+++.-...+++..|. ++..+| +++.+++. .+|..+|+|||+||+.
T Consensus 256 ~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lG-----ase~c~~~arqY~ldRkQFG~PLAa 324 (432)
T KOG0138|consen 256 ATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALG-----ASEFCLHTARQYTLDRKQFGRPLAA 324 (432)
T ss_pred ccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhch-----hHHHHHHHHHHHHHHHHHhCCchhH
Confidence 999999999999999999998899889999999999 999999 99999999 9999999999999974
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-58 Score=399.35 Aligned_cols=266 Identities=27% Similarity=0.405 Sum_probs=256.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCC--ChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~--p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s 131 (325)
+++|++.|++.+++|+++++.|.+.++|+.+.| -+++|+++.+.|++++ .|++|||.|.+.+..+.++||++|++..
T Consensus 41 ~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~ 120 (421)
T KOG0141|consen 41 LSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGG 120 (421)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999999999999 5789999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCC
Q 020535 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF 211 (325)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~ 211 (325)
+++.++.|+.+++..|.+.|+++|+++|||++.+|+-++++|+|||++|||+..+.++|++++++|+|||.|.||||++.
T Consensus 121 v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~ 200 (421)
T KOG0141|consen 121 VALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPD 200 (421)
T ss_pred cccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCC-----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhch
Q 020535 212 ADVLVIFARNTT-----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSE 285 (325)
Q Consensus 212 Ad~~~v~a~~~~-----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~ 285 (325)
||.++|.|+|+. ..||++|||+++.||++..+..+++|||+..++++.|+|++||+++++|.++ |+-+++.-++
T Consensus 201 advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd 280 (421)
T KOG0141|consen 201 ADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLD 280 (421)
T ss_pred CcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCC
Confidence 999999999963 3589999999999999999999999999999999999999999999999865 9999999999
Q ss_pred hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..|+ ++..+| ++++++|. ..|+++|++||++|+.|
T Consensus 281 ~ERLvla~gplg-----lmqa~~d~~~~Y~~qR~afgk~ig~f 318 (421)
T KOG0141|consen 281 LERLVLAAGPLG-----LMQAALDETFPYAHQRKAFGKKIGHF 318 (421)
T ss_pred hhHhhhccCchH-----HHHHHHHHhhhHHHHHHHhCCchhHH
Confidence 9999 888899 99999999 99999999999999875
No 4
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-57 Score=393.78 Aligned_cols=267 Identities=29% Similarity=0.437 Sum_probs=257.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
++.|++++.++++.+++|..+++.|.+.++|+.++||.+++++..++|+... +|+.|||+|++.++.+.+.|+|+..|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 4669999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++...+..|+ +++++|..+|+++||++||++++...++++.|+|||++|||+..+.|+|++.+|.|+|||.|.||||+.
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9999888876 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhh
Q 020535 211 FADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKV 283 (325)
Q Consensus 211 ~Ad~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~ 283 (325)
.|+|++|+||++++ ++++.|+|+.++||++..+.+.+||.|..++..|+|+||+||.+++||.++ ||++.+..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 99999999999653 469999999999999999999999999999999999999999999999865 99999999
Q ss_pred chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535 284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI 324 (325)
Q Consensus 284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~ 324 (325)
|+.+|. ++.++| ++++++++ .+|+.+|++||+||++
T Consensus 264 fd~tRp~vAa~alG-----~A~r~ld~a~ky~~eRK~FG~~iA~ 302 (408)
T KOG0140|consen 264 FDKTRPNVAAGALG-----LAQRCLDEATKYALERKAFGTPIAN 302 (408)
T ss_pred ccCCCCchhhhhhH-----HHHHHHHHHHHHHHHHHHhCcChhh
Confidence 999999 999999 99999999 9999999999999986
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=6.5e-53 Score=403.73 Aligned_cols=292 Identities=77% Similarity=1.212 Sum_probs=271.8
Q ss_pred ccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-ccc
Q 020535 28 ISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIK 106 (325)
Q Consensus 28 ~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~ 106 (325)
.+..||+.+|.++||++-++++.|+..++++++++++.+++|+.+++.|...+.++...+|.++|++|.+.||+++ + +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~ 80 (412)
T PLN02526 2 VSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-K 80 (412)
T ss_pred cccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-c
Confidence 4667899999999999989999999889999999999999999999999887777778899999999999999999 7 9
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCC
Q 020535 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186 (325)
Q Consensus 107 ~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~ 186 (325)
+|||.|+++.+.+.++|++++.|++++.++.+|..+++..|..+|+++||++|++++++|+.++++++|||+.|||+..+
T Consensus 81 ~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~ 160 (412)
T PLN02526 81 GYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSL 160 (412)
T ss_pred ccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhC
Confidence 99999999999999999999999988766667766666789999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeC
Q 020535 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266 (325)
Q Consensus 187 ~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp 266 (325)
.|++++++|||+|||+|.||+|+..||+++|.+++++++++++|+||++.|||++.+.|+++|+|++++++++|+||+||
T Consensus 161 ~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp 240 (412)
T PLN02526 161 NTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP 240 (412)
T ss_pred eeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEEC
Confidence 99999999999999999999999999999999998755678999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 267 DEDRLPGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 267 ~~~~lg~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++++|+..+++......++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 241 ~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~i~~~ 297 (412)
T PLN02526 241 DEDRLPGVNSFQDTNKVLAVSRVMVAWQPIG-----ISMGVYDMCHRYLKERKQFGAPLAAF 297 (412)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCCchhhh
Confidence 99999876688888888889988 888888 99999999 99999999999999864
No 6
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-52 Score=418.04 Aligned_cols=282 Identities=24% Similarity=0.298 Sum_probs=249.9
Q ss_pred hhhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHH---hCCCChh
Q 020535 15 NARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMK-VRECMEKEIAPIMAEYWE---KAEFPFH 90 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~-~~~f~~~~~~~~~~~~d~---~~~~p~~ 90 (325)
=++++|+|+|+|++++++|+++ +++|++++++. +++|+.. ..++++ .+.+|++
T Consensus 57 ~~~~lF~G~~~~~~l~~~p~~~------------------Ls~ee~~~~d~~v~~l~~~-----~~~~~~~~~~~~~P~e 113 (777)
T PRK09463 57 WEGELFSGKPDWKKLLNYPKPT------------------LTAEEQAFLDGPVEELCRM-----VNDWQITHELADLPPE 113 (777)
T ss_pred hhhhhcCCCCChHHhcCCCCCC------------------CCHHHHHHHHHHHHHHHHH-----HHHHHHhccccCCCHH
Confidence 3789999999999999877754 67999999986 7777653 233333 4689999
Q ss_pred HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHH-HHHHhcCCHHHHHhhchhhhcCCc
Q 020535 91 VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNT 168 (325)
Q Consensus 91 ~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~-~~l~~~g~~~q~~~~l~~l~~g~~ 168 (325)
+|++|++.||+++ +|++|||.|++..+.+.++|++++.+.+++..+.+|++++. .+|..+|+++||++|||++++|+.
T Consensus 114 ~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~ 193 (777)
T PRK09463 114 VWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEE 193 (777)
T ss_pred HHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCc
Confidence 9999999999999 99999999999999999999999999888776777777764 578999999999999999999999
Q ss_pred eeEEEecCCCCCCCCCCCceEE-----EEeCC---EEEEEeEeecccCCCCCCEEEEEEEe-CC--------CCCeEEEE
Q 020535 169 IACWALTEPAYGSDASALNTTA-----TKVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYL 231 (325)
Q Consensus 169 ~~~~a~tEp~~Gsd~~~~~~~a-----~~~~~---g~~lnG~K~~it~~~~Ad~~~v~a~~-~~--------~~~~~~~l 231 (325)
++|+|+|||++|||+..+.|++ +++++ ||+|||+|.||||++.||+++|++++ ++ +.++++||
T Consensus 194 i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fL 273 (777)
T PRK09463 194 IPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCAL 273 (777)
T ss_pred eeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEE
Confidence 9999999999999999888654 44566 69999999999999999999999986 21 34799999
Q ss_pred EeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----CCChHHHHhhchhhh-H--HHhhcccCcHHHHHH
Q 020535 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVSEGEE-T--VWSTISSFSDQPAET 304 (325)
Q Consensus 232 v~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----~~g~~~~~~~l~~~r-~--aa~~~G~~~~~~a~~ 304 (325)
||++.|||++.+.++++|++ ..++++.|+||+||.+++||. +.|+++++..++.+| + ++.++| ++++
T Consensus 274 Vp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG-----~ar~ 347 (777)
T PRK09463 274 IPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTG-----GAKL 347 (777)
T ss_pred EECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 99999999999999999998 579999999999999999986 459999999999999 6 888889 9999
Q ss_pred HHHH-hhhhhhcccCCCCCCCC
Q 020535 305 CSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 305 al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+++. ++|+++|+|||+||+++
T Consensus 348 al~~Av~YA~~R~QFG~pIg~f 369 (777)
T PRK09463 348 AALATGAYARIRRQFKLPIGKF 369 (777)
T ss_pred HHHHHHHHHHHHHHcCCChhhc
Confidence 9999 99999999999999875
No 7
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=4e-51 Score=388.54 Aligned_cols=270 Identities=41% Similarity=0.703 Sum_probs=252.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|.+.||++++|++|||.|+++.+...++|+|++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 88 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS 88 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence 55668999999999999999999999988888888899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++.+.+|..++...|..+|+++|+++|++++++|+.++|+++|||++|||+..+.|+|+++++||+|||+|.||||+.
T Consensus 89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~ 168 (386)
T cd01151 89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP 168 (386)
T ss_pred hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence 98777667665666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhhchhhhH-
Q 020535 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEET- 289 (325)
Q Consensus 211 ~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l~~~r~- 289 (325)
.||+++|++|+++++++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++...|+......++..|+
T Consensus 169 ~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~~ 248 (386)
T cd01151 169 IADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARYG 248 (386)
T ss_pred cCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHHH
Confidence 9999999999876667899999999999999999999999999999999999999999999887788888888999997
Q ss_pred -HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 290 -VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 290 -aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++.++| +++++++. ++|+++|+|||+||+++
T Consensus 249 ~aa~~lG-----~a~~al~~a~~~a~~R~~~g~~i~~~ 281 (386)
T cd01151 249 IAWGALG-----AAEDCYHTARQYVLDRKQFGRPLAAF 281 (386)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhCeecCCchhhh
Confidence 788888 99999999 99999999999999863
No 8
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-51 Score=410.74 Aligned_cols=285 Identities=24% Similarity=0.295 Sum_probs=247.1
Q ss_pred hhhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCChhHHH
Q 020535 15 NARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIP 93 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~-~~~~f~~~~~~~~~~~~d~~~~~p~~~~~ 93 (325)
=++++|+|+|+|+.++++|+++ +++|++++.+ .++++++ .+.. ....++.+.+|+++|+
T Consensus 56 ~~~~lf~G~~~~~~l~~~p~~~------------------l~~eeq~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~evw~ 115 (774)
T PRK13026 56 WEGELFSGKPDWQKLHSYPKPT------------------LTAEEQAFIDNEVETLLT-MLDD-WDIVQNRKDLPPEVWD 115 (774)
T ss_pred hhhhhcCCCCChhhcCCCCccc------------------cCHHHHHHHHHHHHHHHh-hhhh-hhhhhhhcCCCHHHHH
Confidence 4788999999999999777653 6677777776 4677655 2222 2223567899999999
Q ss_pred HHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHH-HHHHHhcCCHHHHHhhchhhhcCCceeE
Q 020535 94 KLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIAC 171 (325)
Q Consensus 94 ~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~g~~~~~ 171 (325)
+|++.||+++ +|++|||.|++..+.+.++|++++.+.+.+..+.+|++++ ..+|..+|+++||++|||++++|+.++|
T Consensus 116 ~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~a 195 (774)
T PRK13026 116 YLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPC 195 (774)
T ss_pred HHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEE
Confidence 9999999999 9999999999999999999999998888777666777666 4588999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCceEEE-----EeCC---EEEEEeEeecccCCCCCCEEEEEEEe-CC--------CCCeEEEEEeC
Q 020535 172 WALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYLVKK 234 (325)
Q Consensus 172 ~a~tEp~~Gsd~~~~~~~a~-----~~~~---g~~lnG~K~~it~~~~Ad~~~v~a~~-~~--------~~~~~~~lv~~ 234 (325)
+|+|||++|||+.+++|+++ ++++ ||+|||+|.||||++.||+++|++++ ++ +.++++|+||+
T Consensus 196 fAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~ 275 (774)
T PRK13026 196 FALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPT 275 (774)
T ss_pred EEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEEC
Confidence 99999999999999986654 4666 69999999999999999999888764 21 24799999999
Q ss_pred CCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----CCChHHHHhhchhhh-H--HHhhcccCcHHHHHHHHH
Q 020535 235 DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVSEGEE-T--VWSTISSFSDQPAETCSD 307 (325)
Q Consensus 235 ~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----~~g~~~~~~~l~~~r-~--aa~~~G~~~~~~a~~al~ 307 (325)
+.|||++.+.++++|++. .++++.|+||+||.+++||+ +.||++++..++.+| + ++.++| +++.+++
T Consensus 276 d~pGV~ig~~~~~lG~~~-~~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G-----~A~~al~ 349 (774)
T PRK13026 276 DHPGVEIGRRHNPLGMAF-MNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTA-----SGHMATR 349 (774)
T ss_pred CCCCeEeeccccccccCc-ccceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 999999999999999986 46899999999999999996 348999999999999 5 788888 9999999
Q ss_pred H-hhhhhhcccCCCCCCCC
Q 020535 308 A-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 308 ~-~~ya~~R~~fG~pl~~~ 325 (325)
. ++|+++|+|||+||+++
T Consensus 350 ~Av~YA~~R~QFG~pIg~f 368 (774)
T PRK13026 350 TTGAYAYVRRQFGMPIGQF 368 (774)
T ss_pred HHHHHHHHHHhcCCCcccc
Confidence 9 99999999999999975
No 9
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=8.3e-49 Score=371.26 Aligned_cols=262 Identities=19% Similarity=0.230 Sum_probs=234.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 54 LLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~--~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
.++++++++++.+++|+++++.+...+ .++.+.||.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.+.
T Consensus 3 ~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~ 82 (378)
T TIGR03203 3 DLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALV 82 (378)
T ss_pred CCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCccc
Confidence 478999999999999999988876543 35667899999999999999999 999999999999999999999999876
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
+.+. + .+..++..++..+|+++||++|||++++|+.++++++|||++|||+..+.|++++++|+|+|||+|.||||+.
T Consensus 83 ~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~ 160 (378)
T TIGR03203 83 LEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160 (378)
T ss_pred chHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCc
Confidence 5432 2 2222445678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535 211 FADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE 285 (325)
Q Consensus 211 ~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~ 285 (325)
.||+++|++++++ ++++++|+||++.|||++.+.+.++|+ .++++.|+||+||.++++|.. +|++.+...++
T Consensus 161 ~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~ 237 (378)
T TIGR03203 161 TADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVD 237 (378)
T ss_pred cCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHH
Confidence 9999999999852 357999999999999999887777776 568999999999999999875 58999999999
Q ss_pred hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..|+ ++.++| +++++++. ++|+++|+|||+||++|
T Consensus 238 ~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~qFG~pi~~~ 275 (378)
T TIGR03203 238 DARAALCAEAVG-----LMDESLKTTVEYIKTRKQFGVPIGSF 275 (378)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHhcCeecCccchhh
Confidence 9998 888899 99999999 99999999999999875
No 10
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-48 Score=370.60 Aligned_cols=267 Identities=22% Similarity=0.281 Sum_probs=239.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~-~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~ 128 (325)
|++.++++++++++.+++|+++++ .+...+.++.+.||.++|++|++.||+++ +|++|||.|+++.+.+.+++++++.
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 345589999999999999999875 56667778888999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccC
Q 020535 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (325)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~ 208 (325)
|+++++.+.++. +...+..+|+++||++|||++++|+.+.|+++|||..|||...+.|+++++++||+|||+|.||||
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 998775544432 345778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS 284 (325)
Q Consensus 209 ~~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l 284 (325)
+..||+++|+++++.+ .++++|+||++.+||++. .|+++|+|+++++++.|+||+||.++++|.+ +|+......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999997422 357889999999999986 5899999999999999999999999999875 4787777778
Q ss_pred hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+..|+ ++.++| +++++++. ++|+++|++||+||+++
T Consensus 238 ~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~ 276 (380)
T PRK03354 238 DHERFLVALTNYG-----TAMCAFEDAARYANQRVQFGEAIGRF 276 (380)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhccCccHHHh
Confidence 88887 778888 99999999 99999999999998763
No 11
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.2e-48 Score=370.30 Aligned_cols=266 Identities=29% Similarity=0.433 Sum_probs=247.0
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~ 133 (325)
++++++.+++.+++|+++++.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++++|++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 4688999999999999999999988888888899999999999999999 999999999999999999999999999998
Q ss_pred hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (325)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad 213 (325)
+.+..|..++...|..+|+++|+++|++++++|++++++++|||.+|||+..+.++|+++++||+|||+|.|+||+..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 76666765556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH
Q 020535 214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET 289 (325)
Q Consensus 214 ~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~ 289 (325)
+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||+++++|.. .|+..+...++..|+
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999997632 46899999999999999999999999999999999999999999999874 488888888999988
Q ss_pred --HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 290 --VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 290 --aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++.++| +++++++. ++|+++|++||+||+++
T Consensus 242 ~~aa~~lG-----~a~~al~~~~~~~~~R~~~g~~i~~~ 275 (376)
T cd01156 242 VLAGGPIG-----IMQAALDVAIPYAHQRKQFGQPIGEF 275 (376)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHhHhcCcchHHh
Confidence 888888 99999999 99999999999999763
No 12
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-48 Score=370.14 Aligned_cols=266 Identities=21% Similarity=0.284 Sum_probs=239.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~-~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~ 128 (325)
|++.++++++.+++.+++|+.+.+. +.+.++|+.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 3456889999999999999999886 4667778888999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhh-hcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeeccc
Q 020535 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (325)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l-~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it 207 (325)
|.+. +.+ ++.++...+..+|+++||++|++++ .+|+.++++++|||+.|||+..+.++|+++++||+|||+|.|||
T Consensus 81 ~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred ChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 9873 322 3334556678899999999999998 59998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHh
Q 020535 208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSK 282 (325)
Q Consensus 208 ~~~~Ad~~~v~a~~~~~----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~ 282 (325)
|+..||+++|+++++++ .++++|+||++.|||++. .|+++|+++++++.++|+||+||.+++||..+ |+.....
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999998532 368999999999999995 58999999999999999999999999999754 8888778
Q ss_pred hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.++..|+ ++.++| +++++++. ++|+++|++||+||+++
T Consensus 237 ~~~~~r~~~aa~~lG-----~a~~al~~~~~~~~~R~~~g~~i~~~ 277 (381)
T PRK12341 237 NFEMERLINAARSLG-----FAECAFEDAARYANQRIQFGKPIGHN 277 (381)
T ss_pred HHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhCCCccHHHh
Confidence 8888888 888899 99999999 99999999999998763
No 13
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.8e-48 Score=372.23 Aligned_cols=267 Identities=25% Similarity=0.422 Sum_probs=247.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChh--HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (325)
Q Consensus 53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~--~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~ 129 (325)
+.+++++.++++.+++|+++++.|.+.+.|+.+.+|.+ +|++|++.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~ 103 (404)
T PLN02519 24 LLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRAS 103 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhc
Confidence 34789999999999999999999999888888888876 6999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (325)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~ 209 (325)
.++++.+.+|...+...|..+|+++||++|+|.+.+|+.++|+++|||.+|||...+.|++++++|||+|||+|.|+||+
T Consensus 104 ~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a 183 (404)
T PLN02519 104 GSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNG 183 (404)
T ss_pred ccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCC
Confidence 99988777776655668889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535 210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE 285 (325)
Q Consensus 210 ~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~ 285 (325)
..||+++|.+++++ +.++++|+||++.|||++.+.|+++|+++++++++.|+||+||+++++|.. .|+......++
T Consensus 184 ~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~ 263 (404)
T PLN02519 184 PVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLD 263 (404)
T ss_pred CcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHH
Confidence 99999999999753 246899999999999999999999999999999999999999999999874 48887888888
Q ss_pred hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535 286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI 324 (325)
Q Consensus 286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~ 324 (325)
..|+ ++.++| +++++++. ++|+++|.+||+||++
T Consensus 264 ~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~~g~pl~~ 300 (404)
T PLN02519 264 LERLVLAAGPLG-----LMQACLDVVLPYVRQREQFGRPIGE 300 (404)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHhceeCCccHHH
Confidence 8887 778888 99999999 9999999999999875
No 14
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.1e-48 Score=368.50 Aligned_cols=265 Identities=28% Similarity=0.449 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~ 133 (325)
++++++++++.+++|+++++.|.+.++|..+.+|.++|+.|++.||+++ +|++|||.|.+..+.+.+++++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 4688999999999999999999988888889999999999999999999 999999999999999999999999999988
Q ss_pred hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (325)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad 213 (325)
+++.+|. ++...+..+|+++|+++|+|++.+|+.++++++|||.+|||...+.++++++++||+|||+|.||||+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7776665 455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH-
Q 020535 214 VLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET- 289 (325)
Q Consensus 214 ~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~- 289 (325)
+++|++++++ ..++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|++.....++..|+
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 239 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN 239 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 9999999753 246889999999999999999999999999999999999999999999875 488888888888888
Q ss_pred -HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 290 -VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 290 -aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++.++| +++++++. ++|+++|+|||+||+++
T Consensus 240 ~aa~~lG-----~a~~al~~~~~~a~~R~~fg~~l~~~ 272 (375)
T cd01162 240 IASCSLG-----AAQAALDLARAYLEERKQFGKPLADF 272 (375)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhhhccCccHHhh
Confidence 888889 99999999 99999999999999864
No 15
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.9e-48 Score=369.19 Aligned_cols=265 Identities=25% Similarity=0.402 Sum_probs=242.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~ 133 (325)
++++++++++.+++|+++++.|.+.++|+.+.+|.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 4678999999999999999999998888888999999999999999999 999999999999999999999999998876
Q ss_pred hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (325)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad 213 (325)
+.+..+ .++...+..+|+++||++||+.+.+|+.++++++|||..|||...+.|++++++|||+|||+|.|+||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 554443 3445566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchh
Q 020535 214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEG 286 (325)
Q Consensus 214 ~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~ 286 (325)
+++|+++++++ .++++|+||+++|||++.+.|+++|+++++++++.|+||+||.+++++.. .|+..+...++.
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999997532 35889999999999999999999999999999999999999999999875 488888888888
Q ss_pred hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 240 ~r~~~aa~~lG-----~a~~~l~~~~~~~~~R~~fg~~i~~~ 276 (378)
T cd01157 240 TRPPVAAGAVG-----LAQRALDEATKYALERKTFGKLIAEH 276 (378)
T ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHhccccCccHHHh
Confidence 887 888888 99999999 99999999999999764
No 16
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.5e-48 Score=367.60 Aligned_cols=264 Identities=26% Similarity=0.320 Sum_probs=241.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~ 133 (325)
++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.+++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 4678899999999999999999998888888999999999999999999 999999999999999999999999999988
Q ss_pred hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (325)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad 213 (325)
++...+ .+++..+..+|+++|+++||+++++|+.++++++|||..|||+.++.++|++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654333 3455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhh
Q 020535 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEE 288 (325)
Q Consensus 214 ~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r 288 (325)
+++|++++++ ..++++|+||++.|||++. .|+++|+++++++++.|+||+||.+++++.. .|+......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 9999999852 2368899999999999975 6899999999999999999999999999875 48888888899999
Q ss_pred H--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 289 T--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 289 ~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 239 ~~~a~~~~G-----~a~~al~~a~~~~~~R~~fg~~i~~~ 273 (372)
T TIGR03207 239 ALIGLQVLA-----VARAALDETWRYVAERQAFGKPLSAF 273 (372)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHhccccCCchhhh
Confidence 8 778888 99999999 99999999999999764
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=2.3e-48 Score=372.17 Aligned_cols=286 Identities=25% Similarity=0.366 Sum_probs=252.2
Q ss_pred hhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHH
Q 020535 17 RSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96 (325)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~ 96 (325)
++.|+|....+..+.||. |++ ..++++++++++.+++|+++++.|. ++++.+.+|.++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~ 66 (409)
T cd01161 4 LNMFLGDIVTKQVFPYPS-------------VLT--EEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLK 66 (409)
T ss_pred hHhhcCCcchhhcCCCcc-------------ccC--ccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHH
Confidence 456777777666664442 333 3478999999999999999999886 34567789999999999
Q ss_pred hCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEec
Q 020535 97 ALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175 (325)
Q Consensus 97 ~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~t 175 (325)
+.||+++ +|++|||.|++..+++.++|++++ |+++++.+.+|..++...+..+|+++|+++|++++++|+.++|+++|
T Consensus 67 ~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~t 145 (409)
T cd01161 67 ELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALT 145 (409)
T ss_pred hCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEec
Confidence 9999999 999999999999999999999999 98888777677655555678899999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEe--CCEEEEEeEeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeEEeccCC
Q 020535 176 EPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIEN 246 (325)
Q Consensus 176 Ep~~Gsd~~~~~~~a~~~--~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~-------~~~~~~~lv~~~~~Gv~~~~~~~ 246 (325)
||++|||...+.++|+++ ++||+|||+|.||||+..||+++|.++++. ++++++|+||++.|||++.+.|+
T Consensus 146 Ep~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~ 225 (409)
T cd01161 146 EPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEK 225 (409)
T ss_pred CCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCccc
Confidence 999999999999999985 457999999999999999999999999751 14688999999999999999999
Q ss_pred ccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCC
Q 020535 247 KIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPL 322 (325)
Q Consensus 247 ~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl 322 (325)
++|+++++++++.|+||+||.+++||.. .|+......++..|+ ++.++| +++++++. ++|+++|++||+||
T Consensus 226 ~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~l 300 (409)
T cd01161 226 KMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIG-----TMKRCIEKAVDYANNRKQFGKKI 300 (409)
T ss_pred ccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHhceeCCccH
Confidence 9999999999999999999999999875 478888889999998 778888 99999999 99999999999998
Q ss_pred CCC
Q 020535 323 QII 325 (325)
Q Consensus 323 ~~~ 325 (325)
+++
T Consensus 301 ~~~ 303 (409)
T cd01161 301 HEF 303 (409)
T ss_pred HHh
Confidence 763
No 18
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=3.4e-48 Score=366.63 Aligned_cols=262 Identities=28% Similarity=0.402 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 020535 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (325)
Q Consensus 58 ~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~ 136 (325)
+++++++.+++|+.+++.|.+.++|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+.+ ++.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~ 80 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL 80 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence 5778999999999999999988888888999999999999999999 9999999999999999999999996554 5556
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEE
Q 020535 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (325)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~ 216 (325)
.+|..++..++..+|+++|+++|+|++.+|+.++|+++|||.+|||+..+.|+++++++||+|||+|.||||+..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 66655566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhchhhhH--
Q 020535 217 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEGEET-- 289 (325)
Q Consensus 217 v~a~~~~~----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~~~r~-- 289 (325)
|.++++++ +++++|+||++.||+++.+.|+++|++++++++++|+||+||.+++||..+ |+......++..|+
T Consensus 161 v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~ 240 (372)
T cd01160 161 VVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLI 240 (372)
T ss_pred EEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99998532 468999999999999999999999999999999999999999999999854 88888888888887
Q ss_pred HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 290 VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 290 aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++.++| +++++++. ++|+++|+|||+||+++
T Consensus 241 aa~~lG-----~a~~al~~a~~~a~~R~~~g~~i~~~ 272 (372)
T cd01160 241 AAGALA-----AAEFMLEETRNYVKQRKAFGKTLAQL 272 (372)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHhhhccCccHHhh
Confidence 788889 99999999 99999999999998763
No 19
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-48 Score=370.74 Aligned_cols=265 Identities=25% Similarity=0.351 Sum_probs=244.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 020535 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (325)
Q Consensus 54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~ 132 (325)
.++++++++++.+++|+.+++.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++|++++.++++
T Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~ 115 (410)
T PTZ00461 36 NPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGF 115 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchH
Confidence 58899999999999999999999998888888999999999999999999 99999999999999999999999999887
Q ss_pred hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCC-EEEEEeEeecccCCCC
Q 020535 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNSTF 211 (325)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~-g~~lnG~K~~it~~~~ 211 (325)
++.+..|..+....+..+|+++||++|+|++++|+.++|+++|||.+|||+..+.|+++++++ ||+|||+|.||||+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~ 195 (410)
T PTZ00461 116 CLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTV 195 (410)
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCcc
Confidence 765556654555677889999999999999999999999999999999999999999999865 6999999999999999
Q ss_pred CCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH-
Q 020535 212 ADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET- 289 (325)
Q Consensus 212 Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~- 289 (325)
||+++|.+++++ ++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+ .|+......++..|+
T Consensus 196 Ad~~lv~a~~~~--~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~ 273 (410)
T PTZ00461 196 ADVFLIYAKVDG--KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVT 273 (410)
T ss_pred CCEEEEEEEeCC--ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHH
Confidence 999999999753 5899999999999999999999999999999999999999999999975 488888888888888
Q ss_pred -HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 290 -VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 290 -aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++.++| +++++++. ++|+++|+|||+||+++
T Consensus 274 ~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 306 (410)
T PTZ00461 274 LAAMAVG-----IAERSVELMTSYASERKAFGKPISNF 306 (410)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhCeecCcCHHhh
Confidence 888889 99999999 99999999999999864
No 20
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.4e-46 Score=354.69 Aligned_cols=264 Identities=23% Similarity=0.265 Sum_probs=231.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCh----hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHH
Q 020535 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA 126 (325)
Q Consensus 53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d-~~~~~p~----~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la 126 (325)
+.++++++++++.+++|+.+++.|...+.+ +...+|. ++|++|.+.||+++ +|++|||.|+++.+.+.++|+++
T Consensus 2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999988765532 3334664 89999999999999 99999999999999999999999
Q ss_pred ccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecc
Q 020535 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (325)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~i 206 (325)
+.+.+.++...++ ++...|..+|+++||++|||++++|+.+.++++|||++|||+..+.|+++++++||+|||+|.||
T Consensus 82 ~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~v 159 (395)
T TIGR03204 82 SAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWT 159 (395)
T ss_pred hcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEee
Confidence 9998877543322 33457888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535 207 GNSTFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (325)
Q Consensus 207 t~~~~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~ 281 (325)
+|+..||+++|.+++++ +.++++|+||++.|||++.+.....| +.+++++.|+||+||.+++||.. .|+....
T Consensus 160 t~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~ 237 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAK 237 (395)
T ss_pred cCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999999753 24689999999999999987666654 66899999999999999999874 5899999
Q ss_pred hhchhhhHHHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 282 KVSEGEETVWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 282 ~~l~~~r~aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..++..|+...++| +++++++. ++|+++|+|||+||+++
T Consensus 238 ~~l~~~r~g~aa~g-----~a~~~l~~a~~ya~~R~~fg~~i~~~ 277 (395)
T TIGR03204 238 FLLGNERTGIARVG-----VSKERIRRIKDLAAKVESGGKPVIED 277 (395)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcCCccccC
Confidence 99999998333378 99999999 99999999999999875
No 21
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=4.6e-46 Score=352.10 Aligned_cols=263 Identities=38% Similarity=0.568 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 020535 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (325)
Q Consensus 58 ~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~ 136 (325)
+++++++.+++|+.+++.+.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|.++.+.+.+++++++.|+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 5788999999999999999888888888899999999999999999 999999999999999999999999999999887
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEE
Q 020535 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (325)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~ 216 (325)
.+|..++..++..+|+++|+++|++++.+|+.++++++|||.+|||+..+.++++++++||+|||+|.|+||+..||+++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 77775666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhchhhhH--H
Q 020535 217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEGEET--V 290 (325)
Q Consensus 217 v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~~~r~--a 290 (325)
|.++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++..+ |+......++..|+ +
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~ 241 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIA 241 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99997532 458899999999999999999999999999999999999999999998754 88888888888888 8
Q ss_pred HhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 291 WSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 291 a~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+.++| +++++++. ++|+++|++||+||+++
T Consensus 242 a~~lG-----~a~~~l~~~~~~~~~R~~~g~~~~~~ 272 (373)
T cd01158 242 AQALG-----IAQAALDAAVDYAKERKQFGKPIADF 272 (373)
T ss_pred HHHHH-----HHHHHHHHHHHHHHhCcccCCcHHHh
Confidence 88889 99999999 99999999999998753
No 22
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.6e-45 Score=349.54 Aligned_cols=262 Identities=21% Similarity=0.231 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHhC-------CCC----hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHH
Q 020535 59 EQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP----FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA 126 (325)
Q Consensus 59 ~~~l~~~~~~f~~~~~~~~~~~~d~~~-------~~p----~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la 126 (325)
.+++++.+++|+++++.|...++++.. .+| +++|+.+++.||+++ +|++|||.|+++.+.+.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 568999999999999999887776431 134 588999999999999 99999999999999999999999
Q ss_pred ccCCc-chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCC-CCCCCCCCceEEEEeCCEEEEEeEee
Q 020535 127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (325)
Q Consensus 127 ~~~~s-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~~~a~~~~~g~~lnG~K~ 204 (325)
+.+.. .++....+...+..+|..+|+++|+++|+|++++|+.++++++|||+ .|||...+.|+++++++||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 98633 22212222222345788999999999999999999999999999997 58999999999999999999999999
Q ss_pred cccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccc--cceeeEEEeeeeeCCCCCcCCC-
Q 020535 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV- 274 (325)
Q Consensus 205 ~it~~~~--Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~--~~~~~v~f~~v~Vp~~~~lg~~- 274 (325)
|+||+.. +|+++|+++++++ .++++|+||++.||+++.+.|+++|+++ ++++++.|+||+||++++|+..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999954 7899999997532 4689999999999999999999999997 5788999999999999999875
Q ss_pred CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 275 NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 275 ~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.|++.+...++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 243 ~g~~~~~~~~~~~r~~~~a~~lG-----~a~~al~~~~~~~~~R~~fg~~i~~~ 291 (394)
T cd01155 243 RGFEIAQGRLGPGRIHHCMRLIG-----AAERALELMCQRAVSREAFGKKLAQH 291 (394)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCCcHhhh
Confidence 488888899999998 788888 99999999 99999999999999864
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=3.7e-44 Score=341.51 Aligned_cols=266 Identities=33% Similarity=0.482 Sum_probs=237.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~---~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
+++++.++++.+++|+.+.+.|...+.++ ...+|.++++++++.|++++ +|++|||.|.+..+...+.+++++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~ 84 (393)
T COG1960 5 LSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADA 84 (393)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCc
Confidence 45788899999999999999988888775 68899999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhH---HHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCc-eEEEEeCCEEEEEeEeecc
Q 020535 131 SCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRWI 206 (325)
Q Consensus 131 s~~~~~~~~~~~---~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~-~~a~~~~~g~~lnG~K~~i 206 (325)
+.+.....+... ....+..+|+++|+++|+|++++|+.+.|+++|||.+|||+..+. |++++.+++|+|||+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~i 164 (393)
T COG1960 85 GGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWI 164 (393)
T ss_pred chhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEE
Confidence 876654443322 123667899999999999999999999999999999999999988 6676766669999999999
Q ss_pred cCCCCCCEEEEEEEeCCC----CCeEEEEEeCC-CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH
Q 020535 207 GNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (325)
Q Consensus 207 t~~~~Ad~~~v~a~~~~~----~~~~~~lv~~~-~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~ 280 (325)
||++.||+++|+++++++ +++++|+||++ .||+++.+.+++.|+++++++++.|+||+||.+++||+. .|+..+
T Consensus 165 s~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~ 244 (393)
T COG1960 165 SNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIA 244 (393)
T ss_pred cCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHH
Confidence 999999999999999653 57999999999 599999999865599999999999999999999999964 599999
Q ss_pred HhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 281 SKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 281 ~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
...++.+|+ ++.++| +++++++. ++|+++|++||+||+++
T Consensus 245 ~~~l~~~r~~~aa~~~G-----~a~~al~~~~~ya~~R~~fg~~i~~~ 287 (393)
T COG1960 245 METLNVERLGIAAQALG-----IAEAALEEAVAYARERKQFGRPIADF 287 (393)
T ss_pred HHhhchHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHhcCCchhhc
Confidence 999999999 788889 99999999 99999999999998864
No 24
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.5e-43 Score=338.71 Aligned_cols=252 Identities=23% Similarity=0.249 Sum_probs=225.3
Q ss_pred HHHHHHHHHhhccccHHHHHHhCC--------CC---hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 63 ~~~~~~f~~~~~~~~~~~~d~~~~--------~p---~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
++.+++|+.+++.|.+.++|+... || .++|++|++.||+++ +|++|||.|.++.++..++|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 567899999999999888877654 88 678999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~ 209 (325)
++++.+.+|. +...+..+|+++||++|++++++|+.++|+++|||++|||+..+.|+++++ +|||+|||+|.|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 8877655543 345678889999999999999999999999999999999999999999998 5679999999999999
Q ss_pred CCC----CEEEEEEEeCC----CCCeEEEEEeCCC-----CCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-C
Q 020535 210 TFA----DVLVIFARNTT----TNQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N 275 (325)
Q Consensus 210 ~~A----d~~~v~a~~~~----~~~~~~~lv~~~~-----~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~ 275 (325)
..| ++++|++++++ .+++++|+||++. |||++.+.|+++|+++++++++.|+||+|| +||.+ .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 57889998753 2368999999987 899999999999999999999999999999 77764 4
Q ss_pred ChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535 276 SFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI 324 (325)
Q Consensus 276 g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~ 324 (325)
|+......++..|+ ++.++| +++++++. ++|+++|++||+||++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~i~~ 283 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTG-----LAEAAYLNALAYAKERKQGGDLIKA 283 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeecCCcCcc
Confidence 88888899999998 788888 99999999 9999999999999543
No 25
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.5e-45 Score=341.02 Aligned_cols=270 Identities=25% Similarity=0.374 Sum_probs=242.0
Q ss_pred ccCCCCCCHHHHHHHH----HHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535 49 YQFDDLLTSEEQAVRM----KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (325)
Q Consensus 49 ~~~~~~l~~~~~~l~~----~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e 123 (325)
+.+.+.+++|+.++.+ ..++|+.+... ....|+....|.+.++.|+++|+|++ +|++|||.|+...+++++.|
T Consensus 70 ~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d--~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e 147 (634)
T KOG0137|consen 70 FPYPEVITSEQKELLEQFVLPLERFFEEVND--SKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFE 147 (634)
T ss_pred cCCcccCcHHHHHHHHhhhhhHHHhhhccch--hhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhh
Confidence 3333345666665553 45555554432 23346777899999999999999999 99999999999999999999
Q ss_pred HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE--EEEEe
Q 020535 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEG 201 (325)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g--~~lnG 201 (325)
.++.+|.++.+.+..|.+++.-.|..+|+++||++|||+|++|+.+++||+|||..|||.+...|+|+..+|| |+|||
T Consensus 148 ~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG 227 (634)
T KOG0137|consen 148 IVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNG 227 (634)
T ss_pred ccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcC
Confidence 9999999999888888888888999999999999999999999999999999999999999999999998766 99999
Q ss_pred EeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535 202 QKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274 (325)
Q Consensus 202 ~K~~it~~~~Ad~~~v~a~~~~-------~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~ 274 (325)
.|.||+|+..||+++|+|+++- .+++++|||+++..|++-.+.+.++|.+++.++++.|+++.||.+++||.+
T Consensus 228 ~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~ 307 (634)
T KOG0137|consen 228 SKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKP 307 (634)
T ss_pred eeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCC
Confidence 9999999999999999999851 246999999999999999999999999999999999999999999999986
Q ss_pred -CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 275 -NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 275 -~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.|++++++.++.+|+ ++..+| .+++++++ .+|+..|+|||++|.++
T Consensus 308 G~G~kva~nilnsgR~~~aaa~~G-----~mkr~I~~~~d~~~~rtQ~g~~L~~~ 357 (634)
T KOG0137|consen 308 GDGFKVAMNILNSGRFGMAAALLG-----LMKRIIEEAADYATNRTQFGKKLHDF 357 (634)
T ss_pred CcchHHHHHHHccCCcchhHHHHH-----HHHHHHHHHHHHhhcceecCcchhhh
Confidence 499999999999999 888888 99999999 99999999999999875
No 26
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=8.6e-43 Score=348.90 Aligned_cols=272 Identities=19% Similarity=0.289 Sum_probs=239.6
Q ss_pred CCCCCcccCCCCCCHHHHHHHHHHHHHHHhh--c-cccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCccHHH
Q 020535 43 PCASDYYQFDDLLTSEEQAVRMKVRECMEKE--I-APIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTG 117 (325)
Q Consensus 43 ~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~--~-~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~ 117 (325)
.++.|...|...++++++++++.+++|+.+. + .|....+++.+.++ .++++.+++.|++++ +|++ +..+
T Consensus 49 ~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~ 122 (686)
T PLN02636 49 KLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAK 122 (686)
T ss_pred cCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHH
Confidence 3444544566667888889999999999877 3 56666677777888 889999999999999 7865 6788
Q ss_pred HHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CC
Q 020535 118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EG 195 (325)
Q Consensus 118 ~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~ 195 (325)
+..+.|++++.+.+++..+.+|..+....|..+|+++||++|||++.+|+.++|+|+|||++|||+..++|+|+++ +|
T Consensus 123 ~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~d 202 (686)
T PLN02636 123 YFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTD 202 (686)
T ss_pred HHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCC
Confidence 8999999999998887767788777778899999999999999999999999999999999999999999999998 67
Q ss_pred EEEEE-----eEeecccCCCC-CCEEEEEEEeC---------CCCCeEEEEEeCC-------CCCeEEeccCCccCcccc
Q 020535 196 GWILE-----GQKRWIGNSTF-ADVLVIFARNT---------TTNQINGYLVKKD-------APGLTVTKIENKIGLRIV 253 (325)
Q Consensus 196 g~~ln-----G~K~~it~~~~-Ad~~~v~a~~~---------~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G~~~~ 253 (325)
+|+|| |+|+||+|+.. ||+++|+||+. .+.|+++||||.+ .|||++.+...++|+++.
T Consensus 203 efVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~ 282 (686)
T PLN02636 203 EFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGV 282 (686)
T ss_pred eEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCC
Confidence 89999 99999999976 99999999985 1357999999987 599999999999999999
Q ss_pred ceeeEEEeeeeeCCCCCcCC-----------------CCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhh
Q 020535 254 QNGDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSS 313 (325)
Q Consensus 254 ~~~~v~f~~v~Vp~~~~lg~-----------------~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~ 313 (325)
+++.+.|+||+||.+++|+. +.|+..+...+..+|+ ++.++| ++++|++. ++|++
T Consensus 283 dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g-----~a~~Al~iAvrYa~ 357 (686)
T PLN02636 283 DNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVG-----VLKASNTIAIRYSL 357 (686)
T ss_pred cceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 99999999999999999952 2378899999999999 888889 99999999 99999
Q ss_pred hcccCCCC------CCCC
Q 020535 314 HDSGWLAP------LQII 325 (325)
Q Consensus 314 ~R~~fG~p------l~~~ 325 (325)
+|+|||+| |+++
T Consensus 358 ~R~qFg~p~~~e~~I~d~ 375 (686)
T PLN02636 358 LRQQFGPPKQPEISILDY 375 (686)
T ss_pred cCEeCCCCCCCCCccccc
Confidence 99999999 7764
No 27
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=2.1e-42 Score=355.91 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=232.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-hhHHHHHH-hCcccCC-cccC---------------
Q 020535 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGG-TIKG--------------- 107 (325)
Q Consensus 53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~-------~~p-~~~~~~l~-~~Gl~~~-~p~~--------------- 107 (325)
+.++++++++++++++|+++++.|...++++.. .+| .+.|+++. ++||+++ +|++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 447899999999999999999998876665432 377 68888875 9999999 9985
Q ss_pred ---------CCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCC
Q 020535 108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (325)
Q Consensus 108 ---------~GG~g~s~~~~~~v~e~la~~~~s~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp 177 (325)
|||.|++..+.+.++|++++.+.+...+ ...+...++.+|..+|+++||++||+++++|+.++|+|+|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986543221 112222334578899999999999999999999999999999
Q ss_pred C-CCCCCCCCceEEEEeCCEEEEEeEeecccCC--CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCc
Q 020535 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGL 250 (325)
Q Consensus 178 ~-~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~--~~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~ 250 (325)
+ +|||+.++.|+|+++++||+|||+|.||||+ +.||+++|++++++ ++++++|+||.+.|||++.+.|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999999 57999999999753 246899999999999999999999999
Q ss_pred ccc--ceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535 251 RIV--QNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI 324 (325)
Q Consensus 251 ~~~--~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~ 324 (325)
+++ +++++.|+||+||.++++|.. .|+..+...++.+|+ |+.++| ++++|++. ++|+++|+|||+||++
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG-----~a~~ale~a~~ya~~R~~fg~~i~~ 714 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIG-----AAERGMQLMVQRALSRKAFGKLIAQ 714 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcCCchhh
Confidence 974 588999999999999999764 488888999999998 888889 99999999 9999999999999987
Q ss_pred C
Q 020535 325 I 325 (325)
Q Consensus 325 ~ 325 (325)
+
T Consensus 715 ~ 715 (822)
T PLN02876 715 H 715 (822)
T ss_pred C
Confidence 4
No 28
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.2e-42 Score=326.78 Aligned_cols=257 Identities=28% Similarity=0.316 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHHhhccccHHHH-----HHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535 58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (325)
Q Consensus 58 ~~~~l~~~~~~f~~~~~~~~~~~~-----d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s 131 (325)
+++++++.+++|+++++.|...+. ++.+.+|.++++.|++.||+++ +|++|||.|.+..+.+.++|++++.+.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~ 81 (380)
T cd01152 2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP 81 (380)
T ss_pred cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence 567899999999999999876543 3446789999999999999999 9999999999999999999999999998
Q ss_pred chhH-HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 132 CSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 132 ~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
+++. +.++ .+...|..+|+++|+++||+++.+|+.+.++++|||.+|||+..+.++++++++||+|||+|.|||++.
T Consensus 82 ~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~ 159 (380)
T cd01152 82 VPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH 159 (380)
T ss_pred cccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence 8864 3322 344578889999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535 211 FADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE 285 (325)
Q Consensus 211 ~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~ 285 (325)
.||+++|++++++ +.++++|+||++.||+++.+.|+++| ++.++++.|+||+||.+++||.. .|+..+...++
T Consensus 160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~ 237 (380)
T cd01152 160 YADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLN 237 (380)
T ss_pred ccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHH
Confidence 9999999999753 23689999999999999999998887 45789999999999999999875 48888888888
Q ss_pred hhhHHHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 286 GEETVWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 286 ~~r~aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..|++ ..| ++.++++. ++|+++|.+||+||+++
T Consensus 238 ~~r~~--~~~-----~~~~~~~~a~~~a~~r~~~g~~l~~~ 271 (380)
T cd01152 238 FERVS--IGG-----SAATFFELLLARLLLLTRDGRPLIDD 271 (380)
T ss_pred hcccc--cch-----hhhHHHHHHHHHHHHHHhcCCCcccC
Confidence 88862 225 66777788 99999999999999874
No 29
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-41 Score=336.48 Aligned_cols=253 Identities=18% Similarity=0.208 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (325)
Q Consensus 57 ~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~---------p---~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e 123 (325)
+.-..+++.+++|+++++.|...+.|+++.+ | .++|+++.+.||+++ +|++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 4457899999999999999998888876533 5 589999999999999 99999999999875555556
Q ss_pred HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE-EEEEeE
Q 020535 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQ 202 (325)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g-~~lnG~ 202 (325)
++++.+.+++++...+ ..++.+|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 5677777765443332 23456889999999999999999999999999999999999999999999999885 999999
Q ss_pred eecccCCCCC----CEEEEEEEeCC----CCCeEEEEEeCCC----------CCeEEeccCCccCccccceeeEEEeeee
Q 020535 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF 264 (325)
Q Consensus 203 K~~it~~~~A----d~~~v~a~~~~----~~~~~~~lv~~~~----------~Gv~~~~~~~~~G~~~~~~~~v~f~~v~ 264 (325)
|.|||++..+ ++++|+||+++ .+++++|+||++. +||++.+.++++|+++++++++.|+|+
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~- 295 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS- 295 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh-
Confidence 9999999863 57899999853 3679999999864 478888889999999999999999994
Q ss_pred eCCCCCcCCCC-ChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccC
Q 020535 265 VPDEDRLPGVN-SFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGW 318 (325)
Q Consensus 265 Vp~~~~lg~~~-g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~f 318 (325)
.+++||.++ |++.+...++..|+ ++.++| +++++++. ++|+++|+||
T Consensus 296 --~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG-----~a~~Al~~Al~YAk~R~Qf 346 (622)
T PTZ00456 296 --VGYLIGEPNAGMKQMFTFMNTARVGTALEGVC-----HAELAFQNALRYARERRSM 346 (622)
T ss_pred --hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcccC
Confidence 689999854 99999999999999 888888 99999999 9999999996
No 30
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.5e-41 Score=320.40 Aligned_cols=245 Identities=20% Similarity=0.257 Sum_probs=213.0
Q ss_pred HHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHH
Q 020535 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (325)
Q Consensus 66 ~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~ 144 (325)
++++. +.+.+.+.++|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++.+.+|.. +.
T Consensus 3 ~~~~~-~~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~ 80 (377)
T cd01163 3 ARPLA-ARIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FV 80 (377)
T ss_pred HHHHH-HHHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HH
Confidence 34433 34777888889999999999999999999999 99999999999999999999999999999887767653 34
Q ss_pred HHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCC
Q 020535 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224 (325)
Q Consensus 145 ~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~ 224 (325)
.++..+|+++||++|++++.+|+.++ .++|||++|+ +..+.++++++++||+|||+|.||||+..||+++|.+++++
T Consensus 81 ~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~- 157 (377)
T cd01163 81 EALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE- 157 (377)
T ss_pred HHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence 68888999999999999999999665 5999999876 66777888888899999999999999999999999999764
Q ss_pred CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhchhhhH--HHhhcccCcHHH
Q 020535 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEGEET--VWSTISSFSDQP 301 (325)
Q Consensus 225 ~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~~~r~--aa~~~G~~~~~~ 301 (325)
+++++|+||++.|||++.+.|+++|++++++++++|+||+||.++++|..+ ++. ....+...|+ ++.++| +
T Consensus 158 ~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG-----~ 231 (377)
T cd01163 158 GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAG-----I 231 (377)
T ss_pred CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHH-----H
Confidence 467899999999999999999999999999999999999999999998754 443 2233445566 778888 9
Q ss_pred HHHHHHH-hhhhhhcc-cCCCC
Q 020535 302 AETCSDA-GKYSSHDS-GWLAP 321 (325)
Q Consensus 302 a~~al~~-~~ya~~R~-~fG~p 321 (325)
++++++. ++|+++|+ +||++
T Consensus 232 a~~al~~~~~~~~~R~~~~g~~ 253 (377)
T cd01163 232 ARAALDDAVAYVRSRTRPWIHS 253 (377)
T ss_pred HHHHHHHHHHHHHhcCCCCCcC
Confidence 9999999 99999995 88874
No 31
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=2e-39 Score=324.09 Aligned_cols=231 Identities=21% Similarity=0.294 Sum_probs=206.5
Q ss_pred HHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhc
Q 020535 82 WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 160 (325)
Q Consensus 82 d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l 160 (325)
++...++.+.++++.+.|+.++ +|++ |.+ +....+.++|++++.+.+++..+.+|..+....|..+|+++||++||
T Consensus 101 ~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L 177 (680)
T PLN02312 101 EQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWL 177 (680)
T ss_pred HHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHH
Confidence 4556778899999999999999 8874 223 57778899999999988877667788777778899999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEE-----eEeecccCC-CCCCEEEEEEEeCC---CCCeEE
Q 020535 161 PSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKRWIGNS-TFADVLVIFARNTT---TNQING 229 (325)
Q Consensus 161 ~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~--~g~~ln-----G~K~~it~~-~~Ad~~~v~a~~~~---~~~~~~ 229 (325)
|++.+|+.++|+|+|||++|||+..+.|+|++++ ++|+|| |+|+||+|+ ..|++++|+||+.. +.|+++
T Consensus 178 ~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~ 257 (680)
T PLN02312 178 KDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHA 257 (680)
T ss_pred HHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEE
Confidence 9999999999999999999999999999999984 679999 799999998 78999999999852 357999
Q ss_pred EEEe-C--C---CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC-----------------CCChHHHHhhchh
Q 020535 230 YLVK-K--D---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVSEG 286 (325)
Q Consensus 230 ~lv~-~--~---~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~-----------------~~g~~~~~~~l~~ 286 (325)
|+|| + + .|||++.+...++|+++.+++.+.|+||+||.+++||+ ..|+..++..+..
T Consensus 258 FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~ 337 (680)
T PLN02312 258 FIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTS 337 (680)
T ss_pred EEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHH
Confidence 9998 2 3 79999999999999999999999999999999999984 3478888899999
Q ss_pred hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC
Q 020535 287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA 320 (325)
Q Consensus 287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~ 320 (325)
+|+ ++.++| ++++|++. ++|+++|+|||+
T Consensus 338 ~R~~iaa~a~g-----~a~~Al~iAvrYa~~R~QFg~ 369 (680)
T PLN02312 338 GRVTIAVSAIY-----SSKVGLAIAIRYSLSRRAFSV 369 (680)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHhCeecCC
Confidence 999 888889 99999999 999999999996
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.1e-38 Score=303.84 Aligned_cols=246 Identities=18% Similarity=0.193 Sum_probs=207.3
Q ss_pred HHHHHHhhccccHHHHHHhCC------CC---hhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 020535 66 VRECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (325)
Q Consensus 66 ~~~f~~~~~~~~~~~~d~~~~------~p---~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~ 136 (325)
..++++.+ .|...++|+.+. +| .++++++.+.||++++|+++|+.| ......+.+.++..+...++.+
T Consensus 37 ~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~ 113 (418)
T cd01154 37 LARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINIEDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPL 113 (418)
T ss_pred HHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccCCchhhCCCc--HHHHHHHHHHHHhcchhccCcH
Confidence 34445555 788888887776 67 788999999999998556666544 2333445677777666555544
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhchhhhcCC----ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCC
Q 020535 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTF 211 (325)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~----~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~ 211 (325)
.++. .++.+|..+|+++|+ +|||++++|+ +++|+++|||++|||+..+.|+|+++ +|+|+|||+|+|+|++ .
T Consensus 114 ~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~ 190 (418)
T cd01154 114 TMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-L 190 (418)
T ss_pred HHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-c
Confidence 4554 466789999988865 6999999997 89999999999999999999999999 8899999999999999 9
Q ss_pred CCEEEEEEEeCC----CCCeEEEEEeCCCC-----CeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535 212 ADVLVIFARNTT----TNQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (325)
Q Consensus 212 Ad~~~v~a~~~~----~~~~~~~lv~~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~ 281 (325)
||+++|+||+++ ++++++|+||++.| ||++.+.|+++|++++++++|.|+||. +++||.. .|++.+.
T Consensus 191 Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~ 267 (418)
T cd01154 191 ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYIL 267 (418)
T ss_pred cCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHH
Confidence 999999999863 35799999999875 999999999999999999999999983 7899875 5999999
Q ss_pred hhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 282 KVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 282 ~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..++..|+ ++.++| +++++++. ++|+++|++||+||+++
T Consensus 268 ~~l~~~R~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~l~~~ 309 (418)
T cd01154 268 EMLNISRLDNAVAALG-----IMRRALSEAYHYARHRRAFGKPLIDH 309 (418)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCcCCCCchhhh
Confidence 99999999 777888 99999999 99999999999998763
No 33
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-36 Score=293.63 Aligned_cols=239 Identities=22% Similarity=0.278 Sum_probs=199.3
Q ss_pred hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHH
Q 020535 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l 95 (325)
.+++|.|+...+++++||.. + +++|+++..+ .|++.. .+.+
T Consensus 19 ~~~lF~g~~~~~~~~pyP~~-~-----------------~~~~~~~~~~---~~~~~~------------------~~~~ 59 (520)
T PTZ00457 19 AAGLFNFKIVPEEMFPYPCR-K-----------------LDGDEAENLQ---SLLEQI------------------RSND 59 (520)
T ss_pred HHHhhCcccchhhcCCCCCC-C-----------------CCHHHHHHHH---HHHHHH------------------Hhch
Confidence 67899999999999976621 1 2344443322 222211 0047
Q ss_pred HhC-cccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEE
Q 020535 96 GAL-RVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173 (325)
Q Consensus 96 ~~~-Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a 173 (325)
+++ ||+++ +|++|||.|++..+++.++|++++.+.+.+..+..|..++..+|..+|+++||++|||++++|+.++++|
T Consensus 60 ~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~A 139 (520)
T PTZ00457 60 KILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWA 139 (520)
T ss_pred HhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEE
Confidence 799 99999 9999999999999999999999998877665454566566678888999999999999999999999999
Q ss_pred ecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCC----------CCCeEEEEEeCCCCCeEEe
Q 020535 174 LTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAPGLTVT 242 (325)
Q Consensus 174 ~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~----------~~~~~~~lv~~~~~Gv~~~ 242 (325)
++| ++|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .+++++|+||++.|||++.
T Consensus 140 ltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~ 217 (520)
T PTZ00457 140 TEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVN 217 (520)
T ss_pred eCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEe
Confidence 988 8999999999999986 4579999999965 8999999999999742 1368999999999999986
Q ss_pred ccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhh
Q 020535 243 KIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSH 314 (325)
Q Consensus 243 ~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~ 314 (325)
. +++.|+|| |.+++||.. +|++.+...++.+|+ ++.++| +++++++. ++|++.
T Consensus 218 ~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vG-----ia~~ale~av~ya~~ 274 (520)
T PTZ00457 218 G------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLG-----IMKRVVQELRGSNAE 274 (520)
T ss_pred c------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 3 58999997 999999975 699999999999999 888999 99999999 999874
No 34
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=6.4e-36 Score=282.72 Aligned_cols=232 Identities=16% Similarity=0.143 Sum_probs=192.2
Q ss_pred hccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcC
Q 020535 73 EIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG 151 (325)
Q Consensus 73 ~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g 151 (325)
.+.+.+.+.|+.+.||.++|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++++..++ .....+..++
T Consensus 9 ~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~ 87 (370)
T cd01159 9 LIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFP 87 (370)
T ss_pred HHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCC
Confidence 4777888899999999999999999999999 9999999999999999999999999999887654443 3456777889
Q ss_pred CHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCC---CCCeE
Q 020535 152 SEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQIN 228 (325)
Q Consensus 152 ~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~---~~~~~ 228 (325)
+++|++.|++.. .+ ..+ | ...+.++|++++|||+|||+|.|||++..||+++|.+++++ ..+++
T Consensus 88 ~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~ 154 (370)
T cd01159 88 PEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPR 154 (370)
T ss_pred HHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcce
Confidence 999999887742 11 111 1 12456799999999999999999999999999999999753 34689
Q ss_pred EEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-------ChH---HHHhhchhhhH--HHhhccc
Q 020535 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-------SFQ---DTSKVSEGEET--VWSTISS 296 (325)
Q Consensus 229 ~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-------g~~---~~~~~l~~~r~--aa~~~G~ 296 (325)
+|+||++ ||++.+.|+.+|+++++++++.|+||+||++++|+..+ +.. .........|+ ++.++|
T Consensus 155 ~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG- 231 (370)
T cd01159 155 AFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLG- 231 (370)
T ss_pred EEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHH-
Confidence 9999987 99999999999999999999999999999999997532 211 12223345555 778888
Q ss_pred CcHHHHHHHHHH-hhhhhhcccC---CCCCCCC
Q 020535 297 FSDQPAETCSDA-GKYSSHDSGW---LAPLQII 325 (325)
Q Consensus 297 ~~~~~a~~al~~-~~ya~~R~~f---G~pl~~~ 325 (325)
+++++++. ++|+++|.+| |+||+++
T Consensus 232 ----~a~~~l~~~~~~~~~R~~~~~~g~~i~~~ 260 (370)
T cd01159 232 ----AAEGALAEFLELAGKRVRQYGAAVKMAEA 260 (370)
T ss_pred ----HHHHHHHHHHHHhccCcccCCCccccccC
Confidence 99999999 9999999998 7788764
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.2e-34 Score=269.17 Aligned_cols=220 Identities=32% Similarity=0.479 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHH
Q 020535 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (325)
Q Consensus 58 ~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~ 137 (325)
+++++++.+++|+.+++.+...+.++ ++...|+.+++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence 56789999999999999988886555 444556667777776
Q ss_pred HhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEE
Q 020535 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (325)
Q Consensus 138 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v 217 (325)
+++.+|..+|+++|+++|++.+.+|+.++++++|||.+|||...+.++++++++||+|||+|.|+|++..||+++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 3345778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--H
Q 020535 218 FARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--V 290 (325)
Q Consensus 218 ~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--a 290 (325)
++++++ ++++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||.+++++.. .++......+...|+ +
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a 198 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 999853 246889999999999999999999999999999999999999999999875 477777888888887 8
Q ss_pred HhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 291 WSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 291 a~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+.++| +++++++. ++|+++|++||+||+++
T Consensus 199 a~~~G-----~a~~al~~~~~~~~~r~~~g~~~~~~ 229 (327)
T cd00567 199 AVALG-----AARAALDEAVEYAKQRKQFGKPLAEF 229 (327)
T ss_pred HHHHH-----HHHHHHHHHHHHHHhccccCCccccc
Confidence 88888 99999999 99999999999999864
No 36
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-34 Score=278.37 Aligned_cols=220 Identities=16% Similarity=0.148 Sum_probs=179.9
Q ss_pred hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH-HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCC
Q 020535 90 HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (325)
Q Consensus 90 ~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~l-a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~ 167 (325)
++++.+.+.|+.++ .++++| .+.. .. ..+.+.+ +....... +.+..+.++..+..+|+++|+++|+|++++|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~~~-~~-~~~~~~l~~~~~~g~~--cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~ 164 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SGAF-VA-RAARFMLHAQVEAGTL--CPITMTFAATPLLLQMLPAPFQDWLTPLLSDR 164 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-chHH-HH-HHHHHHHHhhhhHHhh--chHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 56667778999988 666665 2221 12 2222333 33332222 22322345567777899999999999999997
Q ss_pred -------------ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEe
Q 020535 168 -------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233 (325)
Q Consensus 168 -------------~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~ 233 (325)
+++++++|||++|||+..+.|+|+++ +|+|+|||+|+||| ++.||+++|+||++ +++++|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp 241 (538)
T PRK11561 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVP 241 (538)
T ss_pred cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEE
Confidence 45699999999999999999999995 56799999999999 68899999999986 589999999
Q ss_pred CCCC-----CeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHH
Q 020535 234 KDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETC 305 (325)
Q Consensus 234 ~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~a 305 (325)
++.| ||++.+.++++|+|++++++|.|+|| .+++||+. .|++.+...++.+|+ ++.++| +++++
T Consensus 242 ~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G-----~a~~A 313 (538)
T PRK11561 242 RFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHG-----LMRRA 313 (538)
T ss_pred CCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 9988 79999999999999999999999999 37899985 499999999999999 777888 99999
Q ss_pred HHH-hhhhhhcccCCCCCCCC
Q 020535 306 SDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 306 l~~-~~ya~~R~~fG~pl~~~ 325 (325)
++. ++|+++|++||+||+++
T Consensus 314 l~~A~~yA~~R~~FG~~L~~~ 334 (538)
T PRK11561 314 FSVAIYHAHQRQVFGKPLIEQ 334 (538)
T ss_pred HHHHHHHHHhCccCCCccccC
Confidence 999 99999999999999874
No 37
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=8.2e-35 Score=250.33 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=196.3
Q ss_pred HHhCcccCC-cc---cCCCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCce
Q 020535 95 LGALRVAGG-TI---KGYGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (325)
Q Consensus 95 l~~~Gl~~~-~p---~~~GG~g~s~~~~~~v~e~la~~~~s~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~ 169 (325)
.+.+|++.+ +| ..| |.|++..+++.+.|.+++.-.+.-.+ ...+....+..|.+||+++||.+||-+|++|+..
T Consensus 36 aK~eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ir 114 (392)
T KOG1469|consen 36 AKVEGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIR 114 (392)
T ss_pred HHhcchHHhhhHHHHHhh-ccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCce
Confidence 345899999 77 455 57999999999999999976553332 2344445678999999999999999999999999
Q ss_pred eEEEecCCCC-CCCCCCCceEEEEeCCEEEEEeEeecccCCC--CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEE
Q 020535 170 ACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYLVKKDAPGLTV 241 (325)
Q Consensus 170 ~~~a~tEp~~-Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~--~Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~ 241 (325)
.|||+|||+. .||+.++++..+++++-|+|||+|+|+||+. .|.+.+++.+++.+ .+.++.|||.++|||.+
T Consensus 115 ScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvki 194 (392)
T KOG1469|consen 115 SCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKI 194 (392)
T ss_pred eeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeE
Confidence 9999999995 9999999999999999999999999999985 47788899998643 56899999999999999
Q ss_pred eccCCccCcccc--ceeeEEEeeeeeCCCCCc-CCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhc
Q 020535 242 TKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHD 315 (325)
Q Consensus 242 ~~~~~~~G~~~~--~~~~v~f~~v~Vp~~~~l-g~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R 315 (325)
.++...+|.... +..+++|+||+||..+++ |++.||.+.+-.+.-+|+ |+-.+| .++++++. .+.+.+|
T Consensus 195 iRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG-----~aERal~lm~~R~~sR 269 (392)
T KOG1469|consen 195 IRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIG-----LAERALQLMKERALSR 269 (392)
T ss_pred eeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhh-----HHHHHHHHHHHHHHHH
Confidence 999999998655 467899999999999986 556799999999999999 999999 99999999 9999999
Q ss_pred ccCCCCCCC
Q 020535 316 SGWLAPLQI 324 (325)
Q Consensus 316 ~~fG~pl~~ 324 (325)
..|||+|..
T Consensus 270 iaFgk~l~q 278 (392)
T KOG1469|consen 270 IAFGKKLVQ 278 (392)
T ss_pred HHhcchhhh
Confidence 999999864
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=4.7e-34 Score=284.27 Aligned_cols=203 Identities=24% Similarity=0.337 Sum_probs=182.9
Q ss_pred cHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe
Q 020535 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (325)
Q Consensus 114 s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~ 193 (325)
++.+...+.|++++.+.+++..+.+|..+....|..+|+++|+++|+|.+.+|+.++|+|+|||++|||+..++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 46677888999999998876656677767777899999999999999999999999999999999999999999999999
Q ss_pred C--CEEEEE-----eEeecccCCC-CCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccCccccce
Q 020535 194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 255 (325)
Q Consensus 194 ~--~g~~ln-----G~K~~it~~~-~Ad~~~v~a~~~---~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G~~~~~~ 255 (325)
+ ++|+|| |+|+||+|+. .|++++|+||+. ++.|+++|+||.+ .|||++.+.+.++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999985 499999999973 2357999999963 39999999999999999999
Q ss_pred eeEEEeeeeeCCCCCcCC----------------C-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhc
Q 020535 256 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHD 315 (325)
Q Consensus 256 ~~v~f~~v~Vp~~~~lg~----------------~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R 315 (325)
+.+.|+||+||.+++|++ + .|+..+...+..+|+ ++.++| ++++|++. ++|+++|
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g-----~~~~al~iAi~Ya~~R 314 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAM-----SLKKAATIAIRYSAVR 314 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHee
Confidence 999999999999999985 2 367788889999998 888888 99999999 9999999
Q ss_pred ccCCCC
Q 020535 316 SGWLAP 321 (325)
Q Consensus 316 ~~fG~p 321 (325)
+|||+|
T Consensus 315 ~qfg~~ 320 (610)
T cd01150 315 RQFGPK 320 (610)
T ss_pred eecCCC
Confidence 999999
No 39
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=9e-33 Score=275.18 Aligned_cols=185 Identities=20% Similarity=0.296 Sum_probs=163.4
Q ss_pred HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccC
Q 020535 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN 208 (325)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~ 208 (325)
+.+|..+....|..+|+++|+++|||++.+|+.++|+|+|||++|||+..++|+|+++ +++|+|| |+|+||+|
T Consensus 95 ~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~ 174 (646)
T PTZ00460 95 STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGE 174 (646)
T ss_pred EEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCC
Confidence 3456555566788899999999999999999999999999999999999999999996 5679998 99999998
Q ss_pred -CCCCCEEEEEEEeCC---CCCeEEEEEeC-------CCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----
Q 020535 209 -STFADVLVIFARNTT---TNQINGYLVKK-------DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---- 273 (325)
Q Consensus 209 -~~~Ad~~~v~a~~~~---~~~~~~~lv~~-------~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~---- 273 (325)
+..||+++|+||+.. +.|+++|+||. ..|||++.+...++|+++.+++.+.|+||+||.+++||.
T Consensus 175 ~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v 254 (646)
T PTZ00460 175 LGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKV 254 (646)
T ss_pred CCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCccccc
Confidence 688999999999842 35799999993 249999999999999999999999999999999999985
Q ss_pred --CC-----C-hHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC------CCCCC
Q 020535 274 --VN-----S-FQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA------PLQII 325 (325)
Q Consensus 274 --~~-----g-~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~------pl~~~ 325 (325)
++ | ++.....+..+|+ ++.++| ++++|++. ++|+++|+|||+ ||+++
T Consensus 255 ~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g-----~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~y 318 (646)
T PTZ00460 255 SEDGQVERQGNPKVSYASMMYMRNLIIDQYPR-----FAAQALTVAIRYSIYRQQFTNDNKQENSVLEY 318 (646)
T ss_pred CCCCccccCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccccCCCCCCCCCcHhhh
Confidence 11 3 6777888888998 777888 99999999 999999999998 88764
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=99.97 E-value=7.9e-31 Score=261.72 Aligned_cols=182 Identities=25% Similarity=0.343 Sum_probs=158.2
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccCC
Q 020535 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS 209 (325)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~~ 209 (325)
.+|..+....|..+|+++|+++|||++.+|+.++|+|+|||++|||+..+.|+|+++ +++|+|| |+|+||+|+
T Consensus 100 ~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~ 179 (664)
T PLN02443 100 DLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL 179 (664)
T ss_pred eehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCC
Confidence 355555566788899999999999999999999999999999999999999999998 5779998 999999997
Q ss_pred -CCCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccC---ccccceeeEEEeeeeeCCCCCcCCC-
Q 020535 210 -TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGV- 274 (325)
Q Consensus 210 -~~Ad~~~v~a~~~---~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~lg~~- 274 (325)
..|++++|+||+. .+.|+++|+||.+ .|||++.+...++| +++.+++.+.|+||+||.+++|++.
T Consensus 180 ~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~ 259 (664)
T PLN02443 180 GKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLS 259 (664)
T ss_pred cccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCccc
Confidence 6899999999974 2357999999975 79999999999999 5568899999999999999999752
Q ss_pred ----CCh--------HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCC
Q 020535 275 ----NSF--------QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQ 323 (325)
Q Consensus 275 ----~g~--------~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~ 323 (325)
+|. +.....+..+|+ ++.++| ++++|++. ++|+++|+|||+|++
T Consensus 260 ~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g-----~~~~Al~iAvrYa~~R~QFg~~~~ 318 (664)
T PLN02443 260 KVTREGKYVQSDVPRQLVYGTMVYVRQTIVADAST-----ALSRAVCIATRYSAVRRQFGSQDG 318 (664)
T ss_pred ccCCCCceecccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccEeCCCCCC
Confidence 221 234456777887 777788 99999999 999999999999987
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.9e-23 Score=195.54 Aligned_cols=223 Identities=22% Similarity=0.315 Sum_probs=186.9
Q ss_pred hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCc
Q 020535 90 HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168 (325)
Q Consensus 90 ~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~ 168 (325)
.-|..|.+.|.+.. .-+. + --...-...++|.++..|.|++.-+.+|..+....+..+|++..++ |+...-+-+.
T Consensus 81 ~r~~~l~~~gv~~~~~~~~-~--~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev 156 (661)
T KOG0135|consen 81 KRIKRLVELGVFKFWLVED-G--PEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV 156 (661)
T ss_pred HHHHHHHHhccCcceeecC-c--hHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence 45666676777665 2121 0 0134467788999999999999989999888888999999999998 9999999999
Q ss_pred eeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccCCC-CCCEEEEEEEe---CCCCCeEEEEEeCC--
Q 020535 169 IACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNST-FADVLVIFARN---TTTNQINGYLVKKD-- 235 (325)
Q Consensus 169 ~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~~~-~Ad~~~v~a~~---~~~~~~~~~lv~~~-- 235 (325)
++|||+||.++||+...++|+|+.+ .+.|+|| -.|.||.|++ .|++.+|+++. +.+.|+..|+|+..
T Consensus 157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp 236 (661)
T KOG0135|consen 157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP 236 (661)
T ss_pred eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence 9999999999999999999999998 5569999 6799999975 58899999987 33568999999954
Q ss_pred -----CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC-----CCC------------hHHHHhhchhhhH--HH
Q 020535 236 -----APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----VNS------------FQDTSKVSEGEET--VW 291 (325)
Q Consensus 236 -----~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~-----~~g------------~~~~~~~l~~~r~--aa 291 (325)
.|||+|.+.-.+.|+.|..++-+.|+||+||.+++|.+ ++| +-.....|..+|+ +.
T Consensus 237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~ 316 (661)
T KOG0135|consen 237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIAS 316 (661)
T ss_pred cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHH
Confidence 47999999999999999999999999999999999954 122 3445667778898 77
Q ss_pred hhcccCcHHHHHHHHHH-hhhhhhcccCCCC
Q 020535 292 STISSFSDQPAETCSDA-GKYSSHDSGWLAP 321 (325)
Q Consensus 292 ~~~G~~~~~~a~~al~~-~~ya~~R~~fG~p 321 (325)
.++| .++-++.+ ++|...|+|||.+
T Consensus 317 ~ai~-----~lkla~tIAIRYS~sRRQFGP~ 342 (661)
T KOG0135|consen 317 SAIG-----ALKLALTIAIRYSLSRRQFGPT 342 (661)
T ss_pred HHHH-----HHHHHHHHhhhhHHhHhhhCCC
Confidence 7888 99999999 9999999999965
No 42
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.82 E-value=2.7e-20 Score=146.13 Aligned_cols=112 Identities=45% Similarity=0.525 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchh
Q 020535 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST 134 (325)
Q Consensus 56 ~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~ 134 (325)
|++++++++.+++|+++++.|...++|+++.+|+++|+++++.||+++ +|++|||.|++..+.+.+++++++.+.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 578999999999999999999999998888999999999999999999 9999999999999999999999999999888
Q ss_pred HHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCC
Q 020535 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (325)
Q Consensus 135 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~ 167 (325)
.+.+|+.+++.+|..+|+++||++|||++++|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888887777789999999999999999999986
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.69 E-value=5.1e-16 Score=150.29 Aligned_cols=168 Identities=19% Similarity=0.197 Sum_probs=130.4
Q ss_pred HhcCCH--HHHHhhchhhhcCCceeEEEecCCCC-CC-------CCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEE
Q 020535 148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS-------DASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (325)
Q Consensus 148 ~~~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~-Gs-------d~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v 217 (325)
..++++ +-..+|+..+.+.++..+-+++.|.. =| |+.-.--..+++++||+|||.|.|+|++ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444443 34568899999999999999998863 11 2221112345678899999999999996 9999999
Q ss_pred EEEeCCC----CC--eEEEEEeCCCCCeEEeccCCccCcccc-----------ceeeEEEeeeeeCCCCC--cCCC----
Q 020535 218 FARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV---- 274 (325)
Q Consensus 218 ~a~~~~~----~~--~~~~lv~~~~~Gv~~~~~~~~~G~~~~-----------~~~~v~f~~v~Vp~~~~--lg~~---- 274 (325)
+++++.. ++ .+.|+||.++||+++.....++|.++. ..+.|.||||+||.+++ +|..
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~ 277 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN 277 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence 9987431 23 789999999999999999999998876 67999999999999999 7764
Q ss_pred CChHHHHhhchhhhHHHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 275 NSFQDTSKVSEGEETVWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 275 ~g~~~~~~~l~~~r~aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.++...... ...+++++| .+..+++. +.|+++ .+||.++.++
T Consensus 278 ~~f~~~~~~---~~~~~~~~g-----~~~~~ld~~~g~a~~-~a~~~gi~~~ 320 (477)
T TIGR02309 278 NAYAATGAV---NHMAHQVVA-----LKIAKTEAFLGVAAL-MAEGIGADGF 320 (477)
T ss_pred HHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHH-HHHhhCcccc
Confidence 244333221 111788889 99999999 999999 9999998764
No 44
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.65 E-value=2.9e-16 Score=105.57 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.4
Q ss_pred EEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 020535 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (325)
Q Consensus 171 ~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~ 222 (325)
|+|+|||++|+|+..++|+|+++++||+|||+|.||+|++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999974
No 45
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.58 E-value=9e-15 Score=140.54 Aligned_cols=180 Identities=22% Similarity=0.272 Sum_probs=141.0
Q ss_pred HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE--EEEE-----eEeecccC
Q 020535 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILE-----GQKRWIGN 208 (325)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g--~~ln-----G~K~~it~ 208 (325)
+..|..+-...|..-|++||.++|+++-.+.++++|+|.||.++|+++..+.|+|+.+... |+|| ..|+|..+
T Consensus 111 l~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGg 190 (670)
T KOG0136|consen 111 LALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGG 190 (670)
T ss_pred hhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCc
Confidence 4466666667888899999999999999999999999999999999999999999998765 9988 89999976
Q ss_pred C-CCCCEEEEEEEe---CCCCCeEEEEEeCC-------CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----
Q 020535 209 S-TFADVLVIFARN---TTTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---- 273 (325)
Q Consensus 209 ~-~~Ad~~~v~a~~---~~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~---- 273 (325)
. ..|++.+|.|+. +..-|+..|+||.. .|||+++++-.+||..+..++-+.|+||+||.+++|-+
T Consensus 191 LG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV 270 (670)
T KOG0136|consen 191 LGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKV 270 (670)
T ss_pred cccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhhee
Confidence 4 568899999997 33457899999954 47999999999999999999999999999999999954
Q ss_pred -CCChHHH--Hhhc-----hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC
Q 020535 274 -VNSFQDT--SKVS-----EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA 320 (325)
Q Consensus 274 -~~g~~~~--~~~l-----~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~ 320 (325)
++|-.+. ...+ -..|. ..-..- +...|.-+ ++|+..|+|+.-
T Consensus 271 ~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~-----~La~A~tIAtRYSaVRRQ~~i 323 (670)
T KOG0136|consen 271 EPDGTYVKPPHPKLGYGTMVYVRSLMVMDQAR-----FLAKAATIATRYSAVRRQSEI 323 (670)
T ss_pred cCCCccccCCccccceeeeEEEeehhHHHHHH-----HHHHHHHHHHHHHHHhhccCC
Confidence 2231110 0111 11221 111222 33455667 999999999864
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.50 E-value=7.7e-07 Score=79.50 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=76.6
Q ss_pred HHHHhhchhhhcCCceeEEEecCCCC--CCCC----CCCceE-EEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC---C
Q 020535 154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNT---T 223 (325)
Q Consensus 154 ~q~~~~l~~l~~g~~~~~~a~tEp~~--Gsd~----~~~~~~-a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~---~ 223 (325)
+-..+|...+.+.++..+-+++.|.. +..+ ..+-.+ .+++++|.+|+|.|...|+++.+|.++|+-... +
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 34457888899999999999999873 2222 113333 345789999999999999999999999885432 1
Q ss_pred -CCCeEEEEEeCCCCCeEEeccCCccCccc------------cceeeEEEeeeeeCCCCCc
Q 020535 224 -TNQINGYLVKKDAPGLTVTKIENKIGLRI------------VQNGDILLKKVFVPDEDRL 271 (325)
Q Consensus 224 -~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~------------~~~~~v~f~~v~Vp~~~~l 271 (325)
.+-...|.||.++||+++.........+. -.-+-+.||||+||.++++
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 23356899999999999886544333321 1235789999999998764
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=5.8e-06 Score=78.44 Aligned_cols=123 Identities=18% Similarity=0.281 Sum_probs=86.1
Q ss_pred cCCH--HHHHhhchhhhcCCceeEEEecCCCCC-CC-C---C--CCceE-EEEeCCEEEEEeEeecccCCCCCCEEEEE-
Q 020535 150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAYG-SD-A---S--ALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIF- 218 (325)
Q Consensus 150 ~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~G-sd-~---~--~~~~~-a~~~~~g~~lnG~K~~it~~~~Ad~~~v~- 218 (325)
+|++ +-..+|+..+.+.++..+-|+|.|-.- |- + . .+-.+ .+.+++|.++.|.|..+|+++.+|.++|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 4444 445689999999999999999988631 11 1 1 12222 34578999999999999999999988888
Q ss_pred EEe--CC-CCCeEEEEEeCCCCCeEEeccC---CccCccccce------------eeEEEeeeeeCCCCCcC
Q 020535 219 ARN--TT-TNQINGYLVKKDAPGLTVTKIE---NKIGLRIVQN------------GDILLKKVFVPDEDRLP 272 (325)
Q Consensus 219 a~~--~~-~~~~~~~lv~~~~~Gv~~~~~~---~~~G~~~~~~------------~~v~f~~v~Vp~~~~lg 272 (325)
.+. .+ .+-...|.+|.++|||.+.-.. ..-|+.+.+. +-+.||||+||.++++-
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~ 276 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI 276 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee
Confidence 433 22 2335689999999998877443 2222111222 33899999999999984
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.18 E-value=4.5e-05 Score=74.49 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=84.4
Q ss_pred HHHHhhchhhhcCCceeEEEecCCCCC-C-CC---CCCc-eEEEEeCCEEEEEeEeecccCCCCCCEEEE-EEEe---CC
Q 020535 154 EQKQKYLPSLAQLNTIACWALTEPAYG-S-DA---SALN-TTATKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT 223 (325)
Q Consensus 154 ~q~~~~l~~l~~g~~~~~~a~tEp~~G-s-d~---~~~~-~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v-~a~~---~~ 223 (325)
+-..+|+..+.+.++..+-+++.|..- | .+ ..+- -..+++++|.+|+|.|...|+++.+|.++| ..+. ++
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 445688999999999999999988631 1 11 1122 234567889999999999999999998888 4443 12
Q ss_pred CCC-eEEEEEeCCCCCeEEeccCCcc----Cc----------c-ccceeeEEEeeeeeCCCCCcC
Q 020535 224 TNQ-INGYLVKKDAPGLTVTKIENKI----GL----------R-IVQNGDILLKKVFVPDEDRLP 272 (325)
Q Consensus 224 ~~~-~~~~lv~~~~~Gv~~~~~~~~~----G~----------~-~~~~~~v~f~~v~Vp~~~~lg 272 (325)
++. -..|.||.++|||++....... +. | .-.-+-+.||||+||.|+++-
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~ 280 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI 280 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee
Confidence 333 4579999999999988543211 00 0 112356889999999999983
No 49
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=93.12 E-value=0.068 Score=43.14 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=34.3
Q ss_pred CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHHhhhhhhcccCCCCCCCC
Q 020535 275 NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDAGKYSSHDSGWLAPLQII 325 (325)
Q Consensus 275 ~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~~~ya~~R~~fG~pl~~~ 325 (325)
+||+++.+.++.+|+ ++.++|. +....-...+|+++|++||+|+.+.
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~----~~~~l~~a~~~~~~r~~~g~~l~~~ 50 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGI----ARRALDEAIEYARRRRQFGKPLAEH 50 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTEETTEEGGGS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccccCcccch
Confidence 589999999999999 7778890 0000000099999999999998763
No 50
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=87.97 E-value=0.48 Score=37.44 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.1
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCc
Q 020535 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168 (325)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~ 168 (325)
.+|.++-...|...||+||+++|+|+..+.+.
T Consensus 93 ~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 93 GLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 36776777899999999999999999887764
No 51
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=34.65 E-value=1.1e+02 Score=26.84 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=46.1
Q ss_pred hCCCChhHHHHHHh-CcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhch
Q 020535 84 KAEFPFHVIPKLGA-LRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161 (325)
Q Consensus 84 ~~~~p~~~~~~l~~-~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~ 161 (325)
...+..++++++|. +|.+++ +|-..- +++++-.+++.|= .| +-+|+..|.++.|+++|.
T Consensus 98 etTISAKvm~~ikavLgaTKiDLPVDIN----DPYDlGLLLRhLR-----------HH----SNLLAnIgdP~VreqVLs 158 (238)
T PF02084_consen 98 ETTISAKVMEDIKAVLGATKIDLPVDIN----DPYDLGLLLRHLR-----------HH----SNLLANIGDPEVREQVLS 158 (238)
T ss_pred CccccHHHHHHHHHHhcccccccccccC----ChhhHHHHHHHHH-----------HH----HHHHhhcCCHHHHHHHHH
Confidence 45567788888876 788899 886543 4677766666531 22 357889999999999998
Q ss_pred hhhcC
Q 020535 162 SLAQL 166 (325)
Q Consensus 162 ~l~~g 166 (325)
.+..-
T Consensus 159 AMqEe 163 (238)
T PF02084_consen 159 AMQEE 163 (238)
T ss_pred HHhhh
Confidence 76654
No 52
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=34.26 E-value=57 Score=21.82 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=24.8
Q ss_pred EEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEE
Q 020535 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232 (325)
Q Consensus 197 ~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv 232 (325)
|-+.|+|.||-.++.-+-+-+.-+.+...+..+++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 457899999999999887776655443333444444
No 53
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=26.10 E-value=1.8e+02 Score=21.29 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHH
Q 020535 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (325)
Q Consensus 57 ~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l 95 (325)
+++++.+.+.++++.+.+.|...-..-..-|+.+.++.+
T Consensus 2 ~~~k~nL~af~~yi~ktl~P~yIl~~m~~~~~~e~v~~I 40 (89)
T cd08816 2 AAEKRNLQRFRDYIKKILRPSYILGFMTTWLEDEEVERI 40 (89)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCHHHHHHH
Confidence 567788888888888888887766555666666666554
No 54
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=22.61 E-value=2.6e+02 Score=19.13 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccccHHHHHHhCCCC-----hhHHHHHHhCcccCC
Q 020535 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAGG 103 (325)
Q Consensus 54 ~l~~~~~~l~~~~~~f~~~~-~~~~~~~~d~~~~~p-----~~~~~~l~~~Gl~~~ 103 (325)
.||+.|+.+++-+++|..++ ..|...++-+.-.+. ...++.|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 37899999999999988764 456667765543332 346677778887654
No 55
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=21.57 E-value=2.2e+02 Score=22.90 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=25.4
Q ss_pred EeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCC-----CCCeEEeccC
Q 020535 192 KVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD-----APGLTVTKIE 245 (325)
Q Consensus 192 ~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~-----~~Gv~~~~~~ 245 (325)
.+.+.|.|+|+|+..--. ..+....+.+.|+|.. -|.|++....
T Consensus 66 a~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 66 ADSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred cCCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 456669999998753211 1111123566677754 4677777665
Done!