Query 020535
Match_columns 325
No_of_seqs 211 out of 1636
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix5_A Acyl-coenzyme A oxidase 100.0 2.1E-57 7.3E-62 436.3 29.5 319 1-325 1-323 (436)
2 3sf6_A Glutaryl-COA dehydrogen 100.0 4E-54 1.4E-58 410.0 26.2 277 41-325 16-297 (403)
3 2d29_A Acyl-COA dehydrogenase; 100.0 7.2E-54 2.5E-58 406.1 27.9 271 50-325 2-284 (387)
4 3ii9_A Glutaryl-COA dehydrogen 100.0 1.8E-54 6.1E-59 411.5 22.1 275 46-325 10-290 (396)
5 3swo_A Glutaryl-COA dehydrogen 100.0 7.4E-54 2.5E-58 407.6 25.5 273 45-325 16-292 (399)
6 3p4t_A Putative acyl-COA dehyd 100.0 1.1E-53 3.9E-58 406.8 26.4 276 45-325 16-299 (403)
7 2eba_A Putative glutaryl-COA d 100.0 1.8E-53 6.3E-58 403.1 27.2 273 47-325 3-280 (385)
8 1ukw_A Acyl-COA dehydrogenase; 100.0 2.7E-53 9.2E-58 401.1 27.3 269 51-325 1-277 (379)
9 3nf4_A Acyl-COA dehydrogenase; 100.0 6.4E-53 2.2E-57 399.6 28.6 268 52-325 13-286 (387)
10 1buc_A Butyryl-COA dehydrogena 100.0 3.1E-53 1.1E-57 401.2 26.1 270 51-325 1-282 (383)
11 2vig_A Short-chain specific ac 100.0 4E-53 1.4E-57 401.6 26.6 269 52-325 3-279 (391)
12 3pfd_A Acyl-COA dehydrogenase; 100.0 1.9E-53 6.6E-58 404.0 24.4 269 51-325 15-291 (393)
13 2jif_A Short/branched chain sp 100.0 5.5E-53 1.9E-57 402.2 27.2 268 52-325 26-301 (404)
14 3r7k_A Probable acyl COA dehyd 100.0 3.6E-53 1.2E-57 403.4 24.9 271 50-325 24-302 (403)
15 2dvl_A Acyl-COA dehydrogenase; 100.0 6.1E-53 2.1E-57 397.8 26.1 264 55-325 3-271 (372)
16 1egd_A Medium chain acyl-COA d 100.0 6.4E-53 2.2E-57 400.8 25.2 270 50-325 11-291 (396)
17 2pg0_A Acyl-COA dehydrogenase; 100.0 2.1E-52 7.2E-57 395.8 27.5 266 53-325 8-284 (385)
18 1rx0_A Acyl-COA dehydrogenase 100.0 2.7E-52 9.3E-57 396.1 28.2 268 52-325 16-290 (393)
19 1ivh_A Isovaleryl-COA dehydrog 100.0 1.5E-52 5E-57 398.1 24.7 267 54-325 12-290 (394)
20 2z1q_A Acyl-COA dehydrogenase; 100.0 3.4E-52 1.1E-56 412.9 26.4 282 16-325 10-299 (577)
21 1siq_A GCD, glutaryl-COA dehyd 100.0 5.9E-52 2E-56 393.6 25.4 272 47-325 6-283 (392)
22 3mpi_A Glutaryl-COA dehydrogen 100.0 8.7E-52 3E-56 393.0 22.8 268 51-325 1-281 (397)
23 4hr3_A Putative acyl-COA dehyd 100.0 1.2E-51 4E-56 394.4 23.6 270 51-325 5-307 (415)
24 2uxw_A VERY-long-chain specifi 100.0 1.9E-51 6.5E-56 408.8 24.6 284 16-325 26-328 (607)
25 1r2j_A Protein FKBI; polyketid 100.0 1.9E-51 6.4E-56 386.8 22.6 254 64-325 2-261 (366)
26 3owa_A Acyl-COA dehydrogenase; 100.0 3E-51 1E-55 406.4 23.5 264 55-325 33-304 (597)
27 3mkh_A Nitroalkane oxidase; ox 100.0 2.9E-49 1E-53 380.3 20.9 269 50-325 2-310 (438)
28 2c12_A Nitroalkane oxidase; ox 100.0 1.9E-48 6.4E-53 374.8 24.2 269 51-325 2-313 (439)
29 2wbi_A Acyl-COA dehydrogenase 100.0 2.2E-48 7.4E-53 373.2 19.8 268 50-325 18-315 (428)
30 3mxl_A Nitrososynthase; flavin 100.0 1.5E-44 5.1E-49 342.9 19.4 259 51-325 5-279 (395)
31 3m9v_A FAD-dependent oxidoredu 100.0 1E-43 3.5E-48 341.7 22.4 254 51-315 16-285 (439)
32 2or0_A Hydroxylase; APC7385, r 100.0 2.6E-44 8.9E-49 343.4 16.0 251 53-325 16-291 (414)
33 2rfq_A 3-HSA hydroxylase, oxyg 100.0 1.1E-42 3.8E-47 330.0 18.9 243 61-325 11-276 (394)
34 2jbr_A P-hydroxyphenylacetate 100.0 2E-42 6.8E-47 331.2 18.6 243 61-325 39-304 (422)
35 1w07_A Acyl-COA oxidase; oxido 100.0 1.2E-38 4.1E-43 319.8 17.3 254 57-325 29-327 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 1.8E-36 6.2E-41 297.1 17.1 221 88-325 88-334 (541)
37 2ddh_A Acyl-COA oxidase; beta 100.0 2.2E-34 7.4E-39 288.7 19.6 251 56-325 26-324 (661)
38 1u8v_A Gamma-aminobutyrate met 99.9 3.4E-26 1.1E-30 221.8 16.6 144 145-289 118-294 (490)
39 2yyk_A 4-hydroxyphenylacetate- 99.9 4.6E-26 1.6E-30 220.4 15.4 156 152-314 122-309 (481)
40 3hwc_A Chlorophenol-4-monooxyg 99.9 5.3E-23 1.8E-27 199.4 12.8 136 150-287 127-288 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.7 3.8E-16 1.3E-20 151.5 13.1 155 154-313 134-313 (517)
No 1
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=2.1e-57 Score=436.30 Aligned_cols=319 Identities=72% Similarity=1.148 Sum_probs=283.5
Q ss_pred CcccCCCCCchhhhhhhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHH
Q 020535 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAE 80 (325)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~ 80 (325)
|.+.++..++....+..+.+++.++.+....++..+|++.+|+...|+++|++.+++|++++++.+++|+++++.|...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~ 80 (436)
T 2ix5_A 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTE 80 (436)
T ss_dssp ----------------CCSSSSSCCCCHHHHCCSSCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcchhhhhhhccccccchhhcCCChhhhhhhccccCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHH
Confidence 45556666666666777888888988888777777788889988889999988899999999999999999999998888
Q ss_pred HHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhh
Q 020535 81 YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY 159 (325)
Q Consensus 81 ~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~ 159 (325)
.++.+.+|.++|++|++.||+++ +| +|||.|++..+.+.++|+++++++++++++.+|..++...|..+|+++||++|
T Consensus 81 ~~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~ 159 (436)
T 2ix5_A 81 YWEKAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKY 159 (436)
T ss_dssp HHHHTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHH
Confidence 78888999999999999999999 88 99999999999999999999999998876767766677788999999999999
Q ss_pred chhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCe
Q 020535 160 LPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGL 239 (325)
Q Consensus 160 l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv 239 (325)
+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|++++++++++|+||++.|||
T Consensus 160 l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv 239 (436)
T 2ix5_A 160 LPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGL 239 (436)
T ss_dssp HHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTE
T ss_pred HHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999755679999999999999
Q ss_pred EEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc
Q 020535 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS 316 (325)
Q Consensus 240 ~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~ 316 (325)
++.+.|+++|+++++++++.|+||+||.++++|..+++......++..|+ ++.++| +++++++. ++|+++|+
T Consensus 240 ~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~ 314 (436)
T 2ix5_A 240 KATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIG-----ISMGIYDMCHRYLKERK 314 (436)
T ss_dssp EEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCE
T ss_pred EeeccccccCCCcCCceeEEeccEEECHHHcCCccccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCe
Confidence 99999999999999999999999999999999987889999999999998 888899 99999999 99999999
Q ss_pred cCCCCCCCC
Q 020535 317 GWLAPLQII 325 (325)
Q Consensus 317 ~fG~pl~~~ 325 (325)
|||+||+++
T Consensus 315 qfG~pi~~~ 323 (436)
T 2ix5_A 315 QFGAPLAAF 323 (436)
T ss_dssp ETTEEGGGS
T ss_pred eCCcchhhc
Confidence 999999874
No 2
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=4e-54 Score=409.98 Aligned_cols=277 Identities=34% Similarity=0.601 Sum_probs=261.3
Q ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCccHHHH
Q 020535 41 FPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGA 118 (325)
Q Consensus 41 ~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~ 118 (325)
+....+|+..|++.++++++++++.+++|+++++.|.+.+.++.+.+| .++|++|++.||+++ + ++|||.|++..+.
T Consensus 16 ~~~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~ 94 (403)
T 3sf6_A 16 QRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAY 94 (403)
T ss_dssp -CCCHHHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHH
T ss_pred hcCCCcchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHH
Confidence 344556888899999999999999999999999999999999999999 999999999999999 9 9999999999999
Q ss_pred HHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEE
Q 020535 119 AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 198 (325)
Q Consensus 119 ~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~ 198 (325)
+.++|++++.++++++++.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+
T Consensus 95 ~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~ 174 (403)
T 3sf6_A 95 GLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWI 174 (403)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEE
T ss_pred HHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEE
Confidence 99999999999998887777766677889999999999999999999999999999999999999999999999999999
Q ss_pred EEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChH
Q 020535 199 LEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278 (325)
Q Consensus 199 lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~ 278 (325)
|||+|.||||+..||+++|+|++++ ++++|+||++.|||++.+.|+++|+|+++++++.|+||+||.+++||...|+.
T Consensus 175 lnG~K~~is~a~~Ad~~~v~ar~~~--g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~ 252 (403)
T 3sf6_A 175 LTGTKMWITNGSVADVAVVWARTDE--GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLG 252 (403)
T ss_dssp EEEEEEEEETGGGCSEEEEEEEETT--EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTH
T ss_pred EEEEEEeecCCcccCEEEEEEEeCC--ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChhHH
Confidence 9999999999999999999999873 69999999999999999999999999999999999999999999999877999
Q ss_pred HHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 279 DTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 279 ~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.....++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 253 ~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~pi~~~ 297 (403)
T 3sf6_A 253 APLRCLNEARFGIVFGALG-----AARDCLETALAYACSREQFDRPIGGF 297 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCcchhh
Confidence 99999999998 888889 99999999 99999999999999874
No 3
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=7.2e-54 Score=406.10 Aligned_cols=271 Identities=32% Similarity=0.478 Sum_probs=253.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (325)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~ 128 (325)
.|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.
T Consensus 2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 81 (387)
T 2d29_A 2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY 81 (387)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 466778999999999999999999999998888899999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccC
Q 020535 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (325)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~ 208 (325)
++++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 161 (387)
T 2d29_A 82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ 161 (387)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence 99988766676546677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC-------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH
Q 020535 209 STFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (325)
Q Consensus 209 ~~~Ad~~~v~a~~~~~-------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~ 280 (325)
+..||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+...
T Consensus 162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 241 (387)
T 2d29_A 162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241 (387)
T ss_dssp TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence 9999999999998632 26999999999999999999999999999999999999999999999975 488888
Q ss_pred HhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 281 SKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 281 ~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
...++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 242 ~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 284 (387)
T 2d29_A 242 LRVLDGGRIGIAAMAVG-----LGQAALDYALAYAKGREAFGRPIAEF 284 (387)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCcchHhh
Confidence 899999998 888889 99999999 99999999999999874
No 4
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=1.8e-54 Score=411.48 Aligned_cols=275 Identities=32% Similarity=0.567 Sum_probs=252.6
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHH
Q 020535 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAE 124 (325)
Q Consensus 46 ~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~ 124 (325)
.|++.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+
T Consensus 10 ~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee 89 (396)
T 3ii9_A 10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE 89 (396)
T ss_dssp TSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 4667888889999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEee
Q 020535 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (325)
Q Consensus 125 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~ 204 (325)
+++.++++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 169 (396)
T 3ii9_A 90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 169 (396)
T ss_dssp HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence 99999998877777766666778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHh
Q 020535 205 WIGNSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282 (325)
Q Consensus 205 ~it~~~~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~ 282 (325)
|+||+..||+++|++++++ ..++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++...|+.....
T Consensus 170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~~ 249 (396)
T 3ii9_A 170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 249 (396)
T ss_dssp EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHH
T ss_pred eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHHH
Confidence 9999999999999999852 23589999999999999999999999999999999999999999999988779999999
Q ss_pred hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 250 ~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 290 (396)
T 3ii9_A 250 CLNSARYGIAWGALG-----AAESCWHIARQYVLDRKQFGRPLAAN 290 (396)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCeeCCCchhhh
Confidence 9999998 788889 99999999 99999999999999874
No 5
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.4e-54 Score=407.60 Aligned_cols=273 Identities=30% Similarity=0.572 Sum_probs=259.0
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (325)
Q Consensus 45 ~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e 123 (325)
..|+++|++.++++++++++.+++|+.+++.|.+.+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+.+.++|
T Consensus 16 ~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~e 94 (399)
T 3swo_A 16 PLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACM 94 (399)
T ss_dssp HHHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999 9 999999999999999999
Q ss_pred HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEe
Q 020535 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK 203 (325)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K 203 (325)
++++.++++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|
T Consensus 95 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K 174 (399)
T 3swo_A 95 ELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTK 174 (399)
T ss_dssp HHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEE
T ss_pred HHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEE
Confidence 99999999887777776677788999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhh
Q 020535 204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283 (325)
Q Consensus 204 ~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~ 283 (325)
.|+||+..||+++|+|+++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.+.|+......
T Consensus 175 ~~vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~ 252 (399)
T 3swo_A 175 MWITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSC 252 (399)
T ss_dssp EEEETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHH
T ss_pred EeECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHH
Confidence 9999999999999999986 46999999999999999999999999999999999999999999999986799999999
Q ss_pred chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 253 l~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fG~~i~~~ 292 (399)
T 3swo_A 253 LNEARFGIVFGALG-----AARDSLETTIAYTQSREVFDKPLSNY 292 (399)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCeeCCcchhhC
Confidence 999998 888899 99999999 99999999999999874
No 6
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=1.1e-53 Score=406.85 Aligned_cols=276 Identities=22% Similarity=0.284 Sum_probs=253.8
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (325)
Q Consensus 45 ~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e 123 (325)
.++.-.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|
T Consensus 16 ~~~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~e 95 (403)
T 3p4t_A 16 TQGPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICE 95 (403)
T ss_dssp -------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHH
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence 34455677889999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHccCCcc-hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeE
Q 020535 124 EIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 202 (325)
Q Consensus 124 ~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~ 202 (325)
++++.++++ ++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+
T Consensus 96 el~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~ 175 (403)
T 3p4t_A 96 EMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGA 175 (403)
T ss_dssp HHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEE
T ss_pred HHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEE
Confidence 999999998 6666666656677899999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHH
Q 020535 203 KRWIGNSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQD 279 (325)
Q Consensus 203 K~~it~~~~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~ 279 (325)
|.||||+..||+++|++++++ .+++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+..
T Consensus 176 K~~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~ 255 (403)
T 3p4t_A 176 KTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQ 255 (403)
T ss_dssp EEEEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred EEEecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHH
Confidence 999999999999999999864 357999999999999999999999999999999999999999999999975 48999
Q ss_pred HHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 280 TSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 280 ~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
....++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 256 ~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~pi~~~ 299 (403)
T 3p4t_A 256 IAAAFVAERVGLATQAYA-----GAQRCLDLTVEWCRNRDTFGRPLISR 299 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCccccc
Confidence 9999999998 888899 99999999 99999999999999874
No 7
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-53 Score=403.08 Aligned_cols=273 Identities=33% Similarity=0.605 Sum_probs=251.3
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 020535 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (325)
Q Consensus 47 d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~l 125 (325)
|.+.|++.++++++++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 82 (385)
T 2eba_A 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYEL 82 (385)
T ss_dssp CTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHH
Confidence 445567778999999999999999999999988888889999999999999999999 9999999999999999999999
Q ss_pred HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCC-CCCceEEEEeCCEEEEEeEee
Q 020535 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQKR 204 (325)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~-~~~~~~a~~~~~g~~lnG~K~ 204 (325)
++.++++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+ ..++|+|++++|||+|||+|.
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~ 162 (385)
T 2eba_A 83 ERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM 162 (385)
T ss_dssp HHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEE
T ss_pred HHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeee
Confidence 9999998877777766666788899999999999999999999999999999999999 999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhhc
Q 020535 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVS 284 (325)
Q Consensus 205 ~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l 284 (325)
|+||+..||+++|++++++. .+++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++..++|++.....+
T Consensus 163 ~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l 241 (385)
T 2eba_A 163 WITNGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL 241 (385)
T ss_dssp EEETTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred ccCCCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHH
Confidence 99999999999999998632 38999999999999999999999999999999999999999999995456899888899
Q ss_pred hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 242 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 280 (385)
T 2eba_A 242 TQARFGIAWGAMG-----ALEAVYEEAVAFAKSRSTFGEPLAKK 280 (385)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBSSSSBGGGS
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCeeCCeeHHhC
Confidence 99998 888899 99999999 99999999999999864
No 8
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.7e-53 Score=401.14 Aligned_cols=269 Identities=28% Similarity=0.438 Sum_probs=251.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~ 129 (325)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 44568999999999999999999999988888889999999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (325)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~ 209 (325)
+++++.+..| .++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus 81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 159 (379)
T 1ukw_A 81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159 (379)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence 9988766666 366778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE 285 (325)
Q Consensus 210 ~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~ 285 (325)
..||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~ 239 (379)
T 1ukw_A 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239 (379)
T ss_dssp TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence 999999999998632 47899999999999999999999999999999999999999999999875 48888889999
Q ss_pred hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 240 ~~r~~~aa~~~G-----~a~~al~~~~~ya~~R~~fg~~i~~~ 277 (379)
T 1ukw_A 240 KTRIPVAAGSVG-----VARRALDEARKYAKEREAFGEPIANF 277 (379)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBSSSSBGGGS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcchhhh
Confidence 9998 888899 99999999 99999999999999874
No 9
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=6.4e-53 Score=399.60 Aligned_cols=268 Identities=26% Similarity=0.380 Sum_probs=246.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
++.++++++++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++ +|++|||.|++..+.+.++|++++.++
T Consensus 13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~ 92 (387)
T 3nf4_A 13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA 92 (387)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 4458999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++.+..|. ++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||+.
T Consensus 93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 171 (387)
T 3nf4_A 93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171 (387)
T ss_dssp HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence 9988777765 566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeC-CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhh
Q 020535 211 FADVLVIFARNT-TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEE 288 (325)
Q Consensus 211 ~Ad~~~v~a~~~-~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r 288 (325)
.||+++|+++++ +.+++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+......++..|
T Consensus 172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 251 (387)
T 3nf4_A 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR 251 (387)
T ss_dssp TCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH
T ss_pred ccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 999999999986 3467999999999999999999999999999999999999999999999975 48999999999999
Q ss_pred H--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 289 T--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 289 ~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 252 ~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~ 286 (387)
T 3nf4_A 252 LGIAAVATG-----LAQAALDEAVAYANERTAFGRKIIDH 286 (387)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHC------CTTTC
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCCchhhh
Confidence 8 888899 99999999 99999999999999875
No 10
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.1e-53 Score=401.23 Aligned_cols=270 Identities=29% Similarity=0.402 Sum_probs=252.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCC---ccHHHHHHHHHHHH
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG---HSVTGAAIAIAEIA 126 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g---~s~~~~~~v~e~la 126 (325)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| +++.+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~ 80 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999999998889999999999999999999999 999999999 99999999999999
Q ss_pred ccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeec
Q 020535 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW 205 (325)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~ 205 (325)
+.++++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~ 160 (383)
T 1buc_A 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (383)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence 9999988777777556678899999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535 206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (325)
Q Consensus 206 it~~~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~ 281 (325)
|||+..||+++|+|++++ +.++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+....
T Consensus 161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 240 (383)
T 1buc_A 161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM 240 (383)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence 999999999999999863 246999999999999999999999999999999999999999999999974 4888888
Q ss_pred hhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 282 KVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 282 ~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 241 ~~l~~~r~~~aa~~~G-----~a~~al~~~~~ya~~R~~fG~~i~~~ 282 (383)
T 1buc_A 241 MTLDGGRIGVAAQALG-----IAEAALADAVEYSKQRVQFGKPLCKF 282 (383)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcchhhh
Confidence 89999998 888889 99999999 99999999999999874
No 11
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=4e-53 Score=401.58 Aligned_cols=269 Identities=30% Similarity=0.435 Sum_probs=249.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++
T Consensus 3 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~ 82 (391)
T 2vig_A 3 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCA 82 (391)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhcc
Confidence 3458999999999999999999999998888999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 162 (391)
T 2vig_A 83 STGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAW 162 (391)
T ss_dssp HHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCCC
Confidence 88877777654567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchh
Q 020535 211 FADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEG 286 (325)
Q Consensus 211 ~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~ 286 (325)
.||+++|+|++++ +.++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++.
T Consensus 163 ~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~ 242 (391)
T 2vig_A 163 EASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDM 242 (391)
T ss_dssp TCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHH
T ss_pred cCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHHH
Confidence 9999999999863 236999999999999999999999999999999999999999999999975 488888889999
Q ss_pred hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
.|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 243 ~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 279 (391)
T 2vig_A 243 GRIGIASQALG-----IAQTALDCAVNYAENRMAFGAPLTKL 279 (391)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCcchhh
Confidence 998 888889 99999999 99999999999999874
No 12
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.9e-53 Score=403.98 Aligned_cols=269 Identities=29% Similarity=0.401 Sum_probs=246.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~ 129 (325)
|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus 15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 3pfd_A 15 ELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVD 94 (393)
T ss_dssp -------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence 55668999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (325)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~ 209 (325)
+++++++..|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||+
T Consensus 95 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 173 (393)
T 3pfd_A 95 CSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNG 173 (393)
T ss_dssp HHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCC
Confidence 99887665553 55567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE 285 (325)
Q Consensus 210 ~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~ 285 (325)
..||+++|+++++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++
T Consensus 174 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~ 253 (393)
T 3pfd_A 174 GKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLD 253 (393)
T ss_dssp TTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred cccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHH
Confidence 999999999998642 57999999999999999999999999999999999999999999999985 48999999999
Q ss_pred hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 254 ~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~ 291 (393)
T 3pfd_A 254 HTRPTIGAQAVG-----IAQGALDAAIAYTKERKQFGRPVSDN 291 (393)
T ss_dssp TTHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCcchhhh
Confidence 9998 888899 99999999 99999999999999874
No 13
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=5.5e-53 Score=402.17 Aligned_cols=268 Identities=28% Similarity=0.419 Sum_probs=249.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
++.+++|++++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++
T Consensus 26 ~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~ 105 (404)
T 2jif_A 26 LQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDA 105 (404)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCc
Confidence 3447899999999999999999999988888889999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++.+.+|..++..+|..+|+++||++|||++.+|+ ++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~ 184 (404)
T 2jif_A 106 SVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAE 184 (404)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCc
Confidence 9888777776666778899999999999999999986 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchh
Q 020535 211 FADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEG 286 (325)
Q Consensus 211 ~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~ 286 (325)
.||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|++.....++.
T Consensus 185 ~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~ 264 (404)
T 2jif_A 185 HAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNE 264 (404)
T ss_dssp TCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred ccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHHH
Confidence 99999999998532 46899999999999999999999999999999999999999999999875 488888899999
Q ss_pred hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 265 ~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~ 301 (404)
T 2jif_A 265 GRIGIAAQMLG-----LAQGCFDYTIPYIKERIQFGKRLFDF 301 (404)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHhCcccCCccccc
Confidence 998 888889 99999999 99999999999999874
No 14
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=3.6e-53 Score=403.37 Aligned_cols=271 Identities=21% Similarity=0.298 Sum_probs=252.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (325)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~ 128 (325)
.++..++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.
T Consensus 24 ~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 103 (403)
T 3r7k_A 24 APEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA 103 (403)
T ss_dssp -CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 345558999999999999999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred -CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeeccc
Q 020535 129 -DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (325)
Q Consensus 129 -~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it 207 (325)
++++++.+.++..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs 183 (403)
T 3r7k_A 104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT 183 (403)
T ss_dssp TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence 8877666654555677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535 208 NSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS 284 (325)
Q Consensus 208 ~~~~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l 284 (325)
|+..||+++|++++++ .+++++|+||+++|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......+
T Consensus 184 ~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l 263 (403)
T 3r7k_A 184 SGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263 (403)
T ss_dssp TTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTH
T ss_pred CCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHH
Confidence 9999999999999864 347999999999999999999999999999999999999999999999975 5899999999
Q ss_pred hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 264 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 302 (403)
T 3r7k_A 264 QAERLGIAVQAYA-----TAGRALDLAKSWARERETFGRPLTGR 302 (403)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCccCCCchhhc
Confidence 99998 888899 99999999 99999999999999874
No 15
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=6.1e-53 Score=397.77 Aligned_cols=264 Identities=31% Similarity=0.475 Sum_probs=249.0
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~ 133 (325)
+++|++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+++++
T Consensus 3 ~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~ 82 (372)
T 2dvl_A 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVA 82 (372)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHHH
Confidence 6899999999999999999999888888889999999999999999999 999999999999999999999999999988
Q ss_pred hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (325)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad 213 (325)
+.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..||
T Consensus 83 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad 162 (372)
T 2dvl_A 83 VIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAH 162 (372)
T ss_dssp HHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcCC
Confidence 77777754667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--H
Q 020535 214 VLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--V 290 (325)
Q Consensus 214 ~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--a 290 (325)
+++|++++++ ++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+......++..|+ +
T Consensus 163 ~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a 240 (372)
T 2dvl_A 163 LYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVA 240 (372)
T ss_dssp EEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999874 7999999999999999999999999999999999999999999999874 488888889999998 8
Q ss_pred HhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 291 WSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 291 a~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+.++| +++++++. ++|+++|+|||+||+++
T Consensus 241 a~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 271 (372)
T 2dvl_A 241 AQAVG-----IARGAFEIAKAYAEEREQFGKKLKEH 271 (372)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHH-----HHHHHHHHHHHHHhhCcccCCchhhh
Confidence 88889 99999999 99999999999999874
No 16
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=6.4e-53 Score=400.78 Aligned_cols=270 Identities=26% Similarity=0.401 Sum_probs=251.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (325)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~ 128 (325)
.|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.
T Consensus 11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 90 (396)
T 1egd_A 11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG 90 (396)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 466678999999999999999999999988888899999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccC
Q 020535 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (325)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~ 208 (325)
++++++.+ .|..++..+|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus 91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 169 (396)
T 1egd_A 91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN 169 (396)
T ss_dssp CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence 99988766 66656666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535 209 STFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (325)
Q Consensus 209 ~~~Ad~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~ 281 (325)
+..||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+....
T Consensus 170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~ 249 (396)
T 1egd_A 170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM 249 (396)
T ss_dssp TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence 9999999999998642 46899999999999999999999999999999999999999999999875 4888888
Q ss_pred hhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 282 KVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 282 ~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
..++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 250 ~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~ 291 (396)
T 1egd_A 250 GAFDKERPVVAAGAVG-----LAQRALDEATKYALERKTFGKLLVEH 291 (396)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCcchhhh
Confidence 99999998 888889 99999999 99999999999999874
No 17
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.1e-52 Score=395.80 Aligned_cols=266 Identities=24% Similarity=0.339 Sum_probs=247.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC-C
Q 020535 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD-A 130 (325)
Q Consensus 53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~-~ 130 (325)
+.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+ +
T Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~ 87 (385)
T 2pg0_A 8 RYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSS 87 (385)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCc
Confidence 458899999999999999999999988888999999999999999999999 99999999999999999999999999 7
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++.+ |..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus 88 ~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 165 (385)
T 2pg0_A 88 LVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGI 165 (385)
T ss_dssp GHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred hHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCc
Confidence 877544 554567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535 211 FADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS 284 (325)
Q Consensus 211 ~Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l 284 (325)
.||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......+
T Consensus 166 ~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l 245 (385)
T 2pg0_A 166 HADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKL 245 (385)
T ss_dssp TCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHHHHH
T ss_pred ccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHHHHH
Confidence 99999999998633 26899999999999999999999999999999999999999999999974 5888888899
Q ss_pred hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 246 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 284 (385)
T 2pg0_A 246 QQERLVVAIAAQT-----AAEVMFSLTKQYVKQRTAFGKRVSEF 284 (385)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCCccchh
Confidence 99998 888889 99999999 99999999999999874
No 18
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.7e-52 Score=396.08 Aligned_cols=268 Identities=26% Similarity=0.378 Sum_probs=249.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.++
T Consensus 16 ~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~ 95 (393)
T 1rx0_A 16 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCT 95 (393)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 3458999999999999999999999988888889999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++++..|. ++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+.
T Consensus 96 ~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~ 174 (393)
T 1rx0_A 96 STTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG 174 (393)
T ss_dssp HHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred chhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCc
Confidence 8887776664 566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhh
Q 020535 211 FADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGE 287 (325)
Q Consensus 211 ~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~ 287 (325)
.||+++|++++++ +.++++|+||++.|||++.+.++++|+++++++++.|+||+||.+++||.. .|+......++..
T Consensus 175 ~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~ 254 (393)
T 1rx0_A 175 ESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGG 254 (393)
T ss_dssp TCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHH
T ss_pred cCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHHH
Confidence 9999999999854 246999999999999999999999999999999999999999999999874 4888888889989
Q ss_pred hH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 288 ET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 288 r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 255 r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~ 290 (393)
T 1rx0_A 255 RINIASCSLG-----AAHASVILTRDHLNVRKQFGEPLASN 290 (393)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGC
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCchhhh
Confidence 98 888899 99999999 99999999999999874
No 19
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.5e-52 Score=398.07 Aligned_cols=267 Identities=25% Similarity=0.364 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCh--hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (325)
Q Consensus 54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~ 130 (325)
.++++++++++.+++|+++++.|.+.+.++.+.+|. ++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++
T Consensus 12 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~ 91 (394)
T 1ivh_A 12 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASG 91 (394)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhch
Confidence 478999999999999999999998888889999999 99999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (325)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~ 210 (325)
++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~ 171 (394)
T 1ivh_A 92 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP 171 (394)
T ss_dssp HHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGG
T ss_pred hHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCC
Confidence 98887777765667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535 211 FADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS 284 (325)
Q Consensus 211 ~Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l 284 (325)
.||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......+
T Consensus 172 ~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l 251 (394)
T 1ivh_A 172 DADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGL 251 (394)
T ss_dssp GCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHH
T ss_pred cCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHHH
Confidence 99999999998643 36899999999999999999999999999999999999999999999974 4888888999
Q ss_pred hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 252 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~ 290 (394)
T 1ivh_A 252 DLERLVLAGGPLG-----LMQAVLDHTIPYLHVREAFGQKIGHF 290 (394)
T ss_dssp HHHHHHHTHHHHH-----HHHHHHHHHHHHHTTCEETTEEGGGS
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcchhcc
Confidence 99998 888889 99999999 99999999999999874
No 20
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-52 Score=412.86 Aligned_cols=282 Identities=25% Similarity=0.383 Sum_probs=253.8
Q ss_pred hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh-CCCChhHHHH
Q 020535 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK-AEFPFHVIPK 94 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~-~~~p~~~~~~ 94 (325)
++++|+|+ .++.++++| + +++|++++++.+++|+++++.|...+.+.. ..+|+++|++
T Consensus 10 ~~~~f~~~-~~~~~~~~~-------------~-------~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~ 68 (577)
T 2z1q_A 10 KGGGWLLE-VPERVYTPE-------------D-------FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRK 68 (577)
T ss_dssp STTGGGTS-CCSCCCCGG-------------G-------CCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccCccccC-CHHHcCCCC-------------C-------CCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHH
Confidence 47899998 666554311 1 578999999999999999888885444322 3789999999
Q ss_pred HHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEE
Q 020535 95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173 (325)
Q Consensus 95 l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a 173 (325)
|++.||+++ +|++|||.|++..+.+.++|++ +.++++++.+..|..++..+|..+|+++||++|||++++|++++|++
T Consensus 69 l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~a 147 (577)
T 2z1q_A 69 AGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYC 147 (577)
T ss_dssp HHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEE
T ss_pred HHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence 999999999 9999999999999999999999 77888888777776666668899999999999999999999999999
Q ss_pred ecCCCCCCCCCCCceEEEEe--CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCcc
Q 020535 174 LTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLR 251 (325)
Q Consensus 174 ~tEp~~Gsd~~~~~~~a~~~--~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~ 251 (325)
+|||++|||+..++|+|+++ +++|+|||+|.||||++.||+++|+|++++ +++++|+||++.|||++.+.|+++|++
T Consensus 148 lTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~~ 226 (577)
T 2z1q_A 148 LTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGIK 226 (577)
T ss_dssp CCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSCT
T ss_pred ecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCCC
Confidence 99999999999999999995 457999999999999999999999999974 679999999999999999999999999
Q ss_pred ccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 252 IVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 252 ~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+++++++.|+||+||.+++||.. .|++.....++.+|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 227 ~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~~~aa~~~G-----~a~~al~~a~~ya~~R~qfg~pi~~~ 299 (577)
T 2z1q_A 227 ASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVG-----GAKRALELSAQYATQRVQFGRPIGRF 299 (577)
T ss_dssp TSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBCSSSBGGGS
T ss_pred CCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCchhhh
Confidence 99999999999999999999974 599999999999998 888889 99999999 99999999999999874
No 21
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=5.9e-52 Score=393.62 Aligned_cols=272 Identities=33% Similarity=0.555 Sum_probs=252.2
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 020535 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (325)
Q Consensus 47 d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~l 125 (325)
|.+.|++.+++|++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++ + ++|||.|+++.+.+.++|++
T Consensus 6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel 84 (392)
T 1siq_A 6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLAREL 84 (392)
T ss_dssp STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHH
Confidence 445577779999999999999999999999888888889999999999999999999 9 99999999999999999999
Q ss_pred HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEEeEe
Q 020535 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQK 203 (325)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~lnG~K 203 (325)
++.++++++.+.++..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K 164 (392)
T 1siq_A 85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK 164 (392)
T ss_dssp HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred HHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEE
Confidence 99999887666566555567788999999999999999999999999999999999999999999999 9999999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhh
Q 020535 204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283 (325)
Q Consensus 204 ~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~ 283 (325)
.||||+..||+++|++++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++..+|+......
T Consensus 165 ~~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~ 243 (392)
T 1siq_A 165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC 243 (392)
T ss_dssp EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHH
T ss_pred EeecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHH
Confidence 99999999999999999864 35899999999999999999999999999999999999999999999887788888888
Q ss_pred chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 244 l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~ 283 (392)
T 1siq_A 244 LNNARYGIAWGVLG-----ASEFCLHTARQYALDRMQFGVPLARN 283 (392)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCeeCCcchhhh
Confidence 999997 778889 99999999 99999999999999864
No 22
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=8.7e-52 Score=393.04 Aligned_cols=268 Identities=27% Similarity=0.436 Sum_probs=250.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCc--cHHHHHHHHHHHH
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGH--SVTGAAIAIAEIA 126 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~--s~~~~~~v~e~la 126 (325)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+| .++|++|++.||+++ +|++|||.|+ +..+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999 999999999999999 9999999999 9999999999999
Q ss_pred ccCCcchhHHHHhhhHHHH-HHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeec
Q 020535 127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (325)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~ 205 (325)
+.++++++.+.+|. ++.. +|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 159 (397)
T 3mpi_A 81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159 (397)
T ss_dssp HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence 99999988777764 4445 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCC---CCCeEEEEE-eCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH
Q 020535 206 IGNSTFADVLVIFARNTT---TNQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (325)
Q Consensus 206 it~~~~Ad~~~v~a~~~~---~~~~~~~lv-~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~ 280 (325)
+||+..||+++|+|++++ ..++++|+| |++.|||++ +.|+++|+++++++++.|+||+||.++++|.. .|+...
T Consensus 160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~ 238 (397)
T 3mpi_A 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238 (397)
T ss_dssp EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence 999999999999999864 246999999 999999999 89999999999999999999999999999985 488889
Q ss_pred HhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 281 SKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 281 ~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
...++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 239 ~~~~~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~i~~~ 281 (397)
T 3mpi_A 239 FGSLNHTRLSAAAGGVG-----LAQACLDAAIKYCNERRQFGKPIGDF 281 (397)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCchhhh
Confidence 999999998 778889 99999999 99999999999999874
No 23
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.2e-51 Score=394.35 Aligned_cols=270 Identities=19% Similarity=0.209 Sum_probs=241.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC------------------CCChhHHHHHHhCcccCC-cccCCCCC
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGG-TIKGYGCP 111 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~------------------~~p~~~~~~l~~~Gl~~~-~p~~~GG~ 111 (325)
|++.++++++++++.+++|+++++.|...+.++.. .+|+++|++|++.||+++ +|++|||.
T Consensus 5 M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG~ 84 (415)
T 4hr3_A 5 MDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELGG 84 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCCC
Confidence 66779999999999999999999988887766543 267899999999999999 99999999
Q ss_pred CccHHHHHHHHHHHHccCCcchhHHH-HhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCC-CCCCCCCCceE
Q 020535 112 GHSVTGAAIAIAEIARVDASCSTFIL-VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTT 189 (325)
Q Consensus 112 g~s~~~~~~v~e~la~~~~s~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~~~ 189 (325)
|+++.+.+.++|++++.+.+...+.. .+...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+..++|+
T Consensus 85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~ 164 (415)
T 4hr3_A 85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT 164 (415)
T ss_dssp CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence 99999999999999998754433221 22223346889999999999999999999999999999999 99999999999
Q ss_pred EEEeCCEEEEEeEeecccCCCC--CCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccc--eeeEEEe
Q 020535 190 ATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ--NGDILLK 261 (325)
Q Consensus 190 a~~~~~g~~lnG~K~~it~~~~--Ad~~~v~a~~~~~----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~--~~~v~f~ 261 (325)
|++++|||+|||+|.||||+.. ||+++|+|+++++ +++++|+||++.|||++.+.|+++|+++++ ++++.|+
T Consensus 165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fd 244 (415)
T 4hr3_A 165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD 244 (415)
T ss_dssp EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEE
T ss_pred EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEc
Confidence 9999999999999999999966 9999999998642 579999999999999999999999999987 9999999
Q ss_pred eeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 262 KVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 262 ~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
||+||.+++||.. .|+......++..|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 245 dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~ 307 (415)
T 4hr3_A 245 NVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIG-----LAEVALEHACRRGLDRTAFGKPLVNL 307 (415)
T ss_dssp EEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred cEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCCcHHHh
Confidence 9999999999985 589999999999998 888899 99999999 99999999999999874
No 24
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=1.9e-51 Score=408.84 Aligned_cols=284 Identities=23% Similarity=0.315 Sum_probs=255.0
Q ss_pred hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHH----HHHHHHHHHHHhhccccHHHHHHhCCCChhH
Q 020535 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ----AVRMKVRECMEKEIAPIMAEYWEKAEFPFHV 91 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~----~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~ 91 (325)
++++|.|+|.++.++++|. . ++++++ ++++.+++|+++.+.|. +.|+...+|.++
T Consensus 26 ~~~lf~g~~~~~~~~~~p~--~-----------------l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~~~ 84 (607)
T 2uxw_A 26 AVGMFKGQLTTDQVFPYPS--V-----------------LNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEETT 84 (607)
T ss_dssp HHHHTTTCCCCTTTSSCCC--C-----------------CCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCHHH
T ss_pred HHHhcCCCCCHHHhCCCCC--C-----------------CCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCHHH
Confidence 5788999999888876442 1 455554 48899999999887653 356778999999
Q ss_pred HHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCcee
Q 020535 92 IPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170 (325)
Q Consensus 92 ~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~ 170 (325)
|++|++.||+++ +|++|||.|++..+.+.++|++++.++++++++..|..++..+|..+|+++||++|+|++++|++++
T Consensus 85 ~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~ 164 (607)
T 2uxw_A 85 WQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVA 164 (607)
T ss_dssp HHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCE
T ss_pred HHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEE
Confidence 999999999999 9999999999999999999999999999888777776565678899999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCceEEEEeC--CEEEEEeEeecccCCCCCCEEEEEEEeCC--------CCCeEEEEEeCCCCCeE
Q 020535 171 CWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNSTFADVLVIFARNTT--------TNQINGYLVKKDAPGLT 240 (325)
Q Consensus 171 ~~a~tEp~~Gsd~~~~~~~a~~~~--~g~~lnG~K~~it~~~~Ad~~~v~a~~~~--------~~~~~~~lv~~~~~Gv~ 240 (325)
|+++|||++|||+..++|+|++++ ++|+|||+|.||||++.||+++|+|++++ .+++++|+||++.|||+
T Consensus 165 ~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~ 244 (607)
T 2uxw_A 165 AFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT 244 (607)
T ss_dssp EEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEE
T ss_pred EEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeE
Confidence 999999999999999999999974 37999999999999999999999999842 24689999999999999
Q ss_pred EeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc
Q 020535 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS 316 (325)
Q Consensus 241 ~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~ 316 (325)
+.+.|+++|+++++++++.|+||+||.+++||.. .|++.+...++.+|+ ++.++| +++++++. ++|+++|+
T Consensus 245 v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G-----~a~~al~~a~~ya~~R~ 319 (607)
T 2uxw_A 245 HGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAG-----TMRGIIAKAVDHATNRT 319 (607)
T ss_dssp ECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCE
T ss_pred EecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999975 489999999999998 788889 99999999 99999999
Q ss_pred cCCCCCCCC
Q 020535 317 GWLAPLQII 325 (325)
Q Consensus 317 ~fG~pl~~~ 325 (325)
|||+||+++
T Consensus 320 qfG~pi~~~ 328 (607)
T 2uxw_A 320 QFGEKIHNF 328 (607)
T ss_dssp ETTEEGGGS
T ss_pred ccCCchhhc
Confidence 999999874
No 25
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.9e-51 Score=386.81 Aligned_cols=254 Identities=20% Similarity=0.266 Sum_probs=235.3
Q ss_pred HHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhH
Q 020535 64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 142 (325)
Q Consensus 64 ~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~ 142 (325)
+.+++|+++++.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++++++.+.+|..+
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 4568899999999988888999999999999999999999 999999999999999999999999999988777776545
Q ss_pred HHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 020535 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (325)
Q Consensus 143 ~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~ 222 (325)
+...|. +|+++||++|+|++++|+ +.|+++|||++|||+..+.|+|++++|||+|||+|.||||+..||+++|+++++
T Consensus 82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~ 159 (366)
T 1r2j_A 82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE 159 (366)
T ss_dssp HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence 667788 999999999999999999 999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH-HhhchhhhH--HHhhcccCc
Q 020535 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT-SKVSEGEET--VWSTISSFS 298 (325)
Q Consensus 223 ~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~-~~~l~~~r~--aa~~~G~~~ 298 (325)
+ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+... ...++..|+ ++.++|
T Consensus 160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G--- 235 (366)
T 1r2j_A 160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVG--- 235 (366)
T ss_dssp S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHH---
T ss_pred C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHH---
Confidence 4 37899999999999999999999999999999999999999999999874 488877 788888998 888899
Q ss_pred HHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 299 DQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 299 ~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+++++++. ++|+++|+|||+||+++
T Consensus 236 --~a~~al~~a~~ya~~R~~fg~~i~~~ 261 (366)
T 1r2j_A 236 --ILRACRTAAVAHARTREQFGRPLGDH 261 (366)
T ss_dssp --HHHHHHHHHHHHHTTCEETTEEGGGS
T ss_pred --HHHHHHHHHHHHHhcCccCCCchhhh
Confidence 99999999 99999999999999874
No 26
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=3e-51 Score=406.44 Aligned_cols=264 Identities=26% Similarity=0.444 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhC-CCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 020535 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (325)
Q Consensus 55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~-~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~ 132 (325)
++++++++++.+++|+++++.|...+.++.. .+|.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.+ +.
T Consensus 33 lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~-~~ 111 (597)
T 3owa_A 33 FSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GF 111 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGT-HH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccc-hH
Confidence 7899999999999999999999888877665 688999999999999999 99999999999999999999999986 44
Q ss_pred hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCC--EEEEEeEeecccCCC
Q 020535 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILEGQKRWIGNST 210 (325)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~--g~~lnG~K~~it~~~ 210 (325)
+..+..|..++..+|..+|+++||++|||++++|++++|+++|||++|||+..++|+|+++++ +|+|||+|.||||+.
T Consensus 112 ~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~ 191 (597)
T 3owa_A 112 AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSA 191 (597)
T ss_dssp HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCc
Confidence 444556655666678899999999999999999999999999999999999999999999644 599999999999999
Q ss_pred CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH
Q 020535 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET 289 (325)
Q Consensus 211 ~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~ 289 (325)
.||+++|+|++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++.+|+
T Consensus 192 ~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R~ 270 (597)
T 3owa_A 192 FADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRY 270 (597)
T ss_dssp TCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHhHHH
Confidence 9999999999864 47999999999999999999999999999999999999999999999975 589999999999998
Q ss_pred --HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 290 --VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 290 --aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
++.++| +++++++. ++|+++|+|||+||+++
T Consensus 271 ~~aa~~lG-----~a~~al~~a~~ya~~R~qfG~pi~~~ 304 (597)
T 3owa_A 271 KLGVGTVG-----SAKRAVEISAQYANQRQQFKQPIARF 304 (597)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcccccc
Confidence 888899 99999999 99999999999999875
No 27
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=2.9e-49 Score=380.25 Aligned_cols=269 Identities=19% Similarity=0.258 Sum_probs=241.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHH----hC-CCC--hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHH
Q 020535 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIA 121 (325)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~----~~-~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v 121 (325)
.|++.+++|++++++.+++|+++++.|...++++ .. .+| +++|++|++.||+++ +|++|||.|+++.+.+.+
T Consensus 2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 4677799999999999999999999988776643 22 455 899999999999999 999999999999999999
Q ss_pred HHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcC--CceeEEEecCCCCCC-----CCCCCceEEEEeC
Q 020535 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKVE 194 (325)
Q Consensus 122 ~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g--~~~~~~a~tEp~~Gs-----d~~~~~~~a~~~~ 194 (325)
+|++++.++++++.+..+ .++...+..+|+++ |++|||++++| +.++|+++|||++|| |+..++|+|++++
T Consensus 82 ~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g 159 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG 159 (438)
T ss_dssp HHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred HHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence 999999999888765444 35556778899999 99999999997 589999999999998 6899999999999
Q ss_pred CEEEEEeEeecccCCC-----CCCEEEEEEEeCC---------CCCeEEEEEeCCC-----CC-eEEeccCCccCccccc
Q 020535 195 GGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYLVKKDA-----PG-LTVTKIENKIGLRIVQ 254 (325)
Q Consensus 195 ~g~~lnG~K~~it~~~-----~Ad~~~v~a~~~~---------~~~~~~~lv~~~~-----~G-v~~~~~~~~~G~~~~~ 254 (325)
|||+|||+|.||||+. .||+++|+|+++. .+++++|+||++. || |++.+.|+++|+++++
T Consensus 160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~ 239 (438)
T 3mkh_A 160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS 239 (438)
T ss_dssp TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence 9999999999999997 7999999999842 1469999999875 88 9999999999999999
Q ss_pred eeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCC-CCCCCC
Q 020535 255 NGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWL-APLQII 325 (325)
Q Consensus 255 ~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG-~pl~~~ 325 (325)
++++.|+||+||.+++||.. .|+..+...++.+|+ ++.++| +++++++. ++|+++|+||| +||+++
T Consensus 240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG-----~a~~al~~a~~ya~~R~~~g~~pi~~~ 310 (438)
T 3mkh_A 240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVG-----LMRAAFDAALKFAKEDNRGGAVPLLER 310 (438)
T ss_dssp CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCTTCSSCGGGS
T ss_pred ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcEeCCCeecccc
Confidence 99999999999999999975 489999999999998 888899 99999999 99999999999 999874
No 28
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=1.9e-48 Score=374.80 Aligned_cols=269 Identities=19% Similarity=0.222 Sum_probs=241.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----CCCC--hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~----~~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e 123 (325)
|++.++++++++++.+++|+++++.|...+.++. +.+| .++|++|++.||+++ +|++|||.|++..+.+.++|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 4556899999999999999999999987766542 3455 899999999999999 99999999999999999999
Q ss_pred HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhh--cCCceeEEEecCCCCCC-----CCCCCceEEEEeCCE
Q 020535 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG 196 (325)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~--~g~~~~~~a~tEp~~Gs-----d~~~~~~~a~~~~~g 196 (325)
++++.++++++.+..|. ++..+|..+|+++||++|+|+++ +|+.++|+++|||++|| |+..++|+|++++||
T Consensus 82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g 160 (439)
T 2c12_A 82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160 (439)
T ss_dssp HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence 99999999987766663 55667889999999999999999 69999999999999998 588899999999999
Q ss_pred EEEEeEeecccCCC-----CCCEEEEEEEe-C----CC-------CCeEEEEEeCCCC------CeEEeccCCccCcccc
Q 020535 197 WILEGQKRWIGNST-----FADVLVIFARN-T----TT-------NQINGYLVKKDAP------GLTVTKIENKIGLRIV 253 (325)
Q Consensus 197 ~~lnG~K~~it~~~-----~Ad~~~v~a~~-~----~~-------~~~~~~lv~~~~~------Gv~~~~~~~~~G~~~~ 253 (325)
|+|||+|.||||+. .||+++|+|++ + ++ .++++|+||++.| |+++.+.|+++|++++
T Consensus 161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~ 240 (439)
T 2c12_A 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT 240 (439)
T ss_dssp EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence 99999999999997 89999999998 5 21 3689999999988 8889999999999999
Q ss_pred ceeeEEEeeeeeCCCCCcCCCC-ChH-HHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhh-cccCCCCCCCC
Q 020535 254 QNGDILLKKVFVPDEDRLPGVN-SFQ-DTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSH-DSGWLAPLQII 325 (325)
Q Consensus 254 ~~~~v~f~~v~Vp~~~~lg~~~-g~~-~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~-R~~fG~pl~~~ 325 (325)
+++++.|+||+||.+++||..+ |+. .....++..|+ ++.++| +++++++. ++|+++ |++||+||+++
T Consensus 241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~rr~~~G~~i~~~ 313 (439)
T 2c12_A 241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIG-----TARAAFEEALVFAKSDTRGGSKHIIEH 313 (439)
T ss_dssp CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCTTSSSCGGGS
T ss_pred CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhceeeCCeehhcc
Confidence 9999999999999999998754 788 88888999998 888889 99999999 999996 88999999864
No 29
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-48 Score=373.17 Aligned_cols=268 Identities=20% Similarity=0.239 Sum_probs=230.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHH---HHHHh-----CC-----CChhHHHHHHhCcccCC-cccCCCCCCccH
Q 020535 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGG-TIKGYGCPGHSV 115 (325)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~---~~d~~-----~~-----~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~ 115 (325)
.|++.++++++++++.+++|+++++.|... +.++. .. +|.++|++|++.||+++ +|+ |.|++.
T Consensus 18 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~ 94 (428)
T 2wbi_A 18 GQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGLSH 94 (428)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCCCH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCCCH
Confidence 366678999999999999999999887665 44432 23 35789999999999999 898 789999
Q ss_pred HHHHHHHHHHHccCCcc-hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCC-CCCCCCCCceEEEEe
Q 020535 116 TGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKV 193 (325)
Q Consensus 116 ~~~~~v~e~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~~~a~~~ 193 (325)
.+.+.++|++++.+.+. ++....+..++...|..+|+++||++|+|++++|+.++|+++|||+ +|||+..+.|+|+++
T Consensus 95 ~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~ 174 (428)
T 2wbi_A 95 VDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRD 174 (428)
T ss_dssp HHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEE
T ss_pred HHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEe
Confidence 99999999999987532 2211222224566888999999999999999999999999999999 999999999999999
Q ss_pred CCEEEEEeEeecccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccc---eeeEEEeee
Q 020535 194 EGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ---NGDILLKKV 263 (325)
Q Consensus 194 ~~g~~lnG~K~~it~~~~--Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~---~~~v~f~~v 263 (325)
+|||+|||+|.||||+.. ||+++|+|+++++ +++++|+||++.|||++.+.|+++|+++++ ++++.|+||
T Consensus 175 ~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv 254 (428)
T 2wbi_A 175 EDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQV 254 (428)
T ss_dssp TTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEE
T ss_pred CCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCce
Confidence 999999999999999987 9999999998643 368999999999999999999999999984 999999999
Q ss_pred eeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 264 FVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 264 ~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+||.+++||.. .|+......++.+|+ ++.++| +++++++. ++|+++|+|||+||+++
T Consensus 255 ~VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~ 315 (428)
T 2wbi_A 255 RVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVG-----LAERALQIMCERATQRIAFKKKLYAH 315 (428)
T ss_dssp EEEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred EECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCChhhh
Confidence 99999999974 588888888999998 888889 99999999 99999999999999864
No 30
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=1.5e-44 Score=342.85 Aligned_cols=259 Identities=19% Similarity=0.217 Sum_probs=223.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHcc
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV 128 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~s~~~~~~v~e~la~~ 128 (325)
++..++++++++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+.+.++|++++.
T Consensus 5 ~~~~lt~e~~~~~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~ 83 (395)
T 3mxl_A 5 LRAPLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83 (395)
T ss_dssp SSSCCSHHHHHHHHHHTTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHHHH-HHhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence 556689999999999999997 4889999999999999999999999999999 999999999 9999999999999999
Q ss_pred CCcchhHHHHhhhHHHHHH--HhcCCHHHH---HhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEe
Q 020535 129 DASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK 203 (325)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K 203 (325)
++++++.+.+|...+..++ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..+++ .++|||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K 158 (395)
T 3mxl_A 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGRK 158 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeEE
Confidence 9998887777654444433 367999999 9999999999999999999998753 22222 268889999999
Q ss_pred ecccCCCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcC--C-CCCh
Q 020535 204 RWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNSF 277 (325)
Q Consensus 204 ~~it~~~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg--~-~~g~ 277 (325)
.||||+..||+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++| . +.++
T Consensus 159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~ 238 (395)
T 3mxl_A 159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARR 238 (395)
T ss_dssp EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCC
T ss_pred EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccH
Confidence 999999999999999998642 358999999999999999999999999999999999999999999998 3 3466
Q ss_pred HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535 278 QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 278 ~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
......+...|+ ++.++| +++++++. ++|++ |+||+++
T Consensus 239 ~~~~~~~~~~r~~~aa~~~G-----~a~~al~~a~~~a~-----~r~i~~~ 279 (395)
T 3mxl_A 239 DAVLAGQTVSSITMLGIYAG-----IAQAARDIAVGFCA-----GRGGEPR 279 (395)
T ss_dssp TTHHHHHHHHHGGGHHHHHH-----HHHHHHHHHHHHHH-----TTCSCCC
T ss_pred HHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHc-----CCCCCCC
Confidence 555544555776 788888 99999999 99998 4566653
No 31
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=1e-43 Score=341.73 Aligned_cols=254 Identities=19% Similarity=0.248 Sum_probs=219.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHcc
Q 020535 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV 128 (325)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~s~~~~~~v~e~la~~ 128 (325)
|++.++++++++++.+++|+. .+.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|++++.
T Consensus 16 m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~ 94 (439)
T 3m9v_A 16 LYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARA 94 (439)
T ss_dssp TSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhh
Confidence 677799999999999999997 5888888899999999999999999999999 999999999 8999999999999999
Q ss_pred CCcchhHHHHhhhHHHHH--HHhcCCHHH---HHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEe
Q 020535 129 DASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK 203 (325)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K 203 (325)
+.++++.+.+|......+ +..+|+++| |++||+++++|+.++|+++|||++ |...+.++ ++|||+|||+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t~---~~~g~vlnG~K 169 (439)
T 3m9v_A 95 DASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRPD---GAGGWLLSGRK 169 (439)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEEC---SSSCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceeec---cCCEEEEEeEE
Confidence 999887766665443333 456799999 999999999999999999999985 43333333 68889999999
Q ss_pred ecccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcC--C-CCCh
Q 020535 204 RWIGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNSF 277 (325)
Q Consensus 204 ~~it~~~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg--~-~~g~ 277 (325)
.||||+..||+++|++++++ ..++++|+||+++|||++.+.|+++|++++++++|.|+||+||.+++|| . +.++
T Consensus 170 ~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g~ 249 (439)
T 3m9v_A 170 TLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARN 249 (439)
T ss_dssp EEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CCC
T ss_pred EeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCchH
Confidence 99999999999999999864 2468999999999999999999999999999999999999999999998 3 2355
Q ss_pred HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhc
Q 020535 278 QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHD 315 (325)
Q Consensus 278 ~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R 315 (325)
......+...|+ ++.++| +++++++. ++|++.|
T Consensus 250 ~~~~~~~~~~r~~~aa~~~G-----~a~~al~~a~~~a~~r 285 (439)
T 3m9v_A 250 DAVLAGQTVSSVSVLGVYVG-----VAQAAYDTAVAALERR 285 (439)
T ss_dssp GGGHHHHHHHHGGGHHHHHH-----HHHHHHHHHHHHHHTC
T ss_pred HHHhhchHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCC
Confidence 444433445676 788888 99999999 9999944
No 32
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=2.6e-44 Score=343.40 Aligned_cols=251 Identities=14% Similarity=0.060 Sum_probs=219.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (325)
Q Consensus 53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s 131 (325)
+.++++++++++.+++|+++ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+++
T Consensus 16 ~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~ 94 (414)
T 2or0_A 16 NLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGA 94 (414)
T ss_dssp -------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhChH
Confidence 44788999999999999986 888888888899999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCC
Q 020535 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF 211 (325)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~ 211 (325)
+++.+..+. ++..+|..+|+++||++|+| +|+.+.|+++| | .|+|++++|||+|||+|.||||+..
T Consensus 95 ~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~ 160 (414)
T 2or0_A 95 SGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGTDH 160 (414)
T ss_dssp HHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTGGG
T ss_pred HHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCCch
Confidence 887666664 56778889999999999999 79999999988 4 5899999999999999999999999
Q ss_pred CCEEEEEEEeCC---CC---CeEEEEEeCCCCCeEEe-ccCCccCccccceeeEEEeeeeeCCCCCcCCC----------
Q 020535 212 ADVLVIFARNTT---TN---QINGYLVKKDAPGLTVT-KIENKIGLRIVQNGDILLKKVFVPDEDRLPGV---------- 274 (325)
Q Consensus 212 Ad~~~v~a~~~~---~~---~~~~~lv~~~~~Gv~~~-~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~---------- 274 (325)
||+++|+++++. .. ++++|+||++ ||++. +.|+++|+++++++++.|+||+||.+++|+..
T Consensus 161 Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~g~ 238 (414)
T 2or0_A 161 CQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKE 238 (414)
T ss_dssp CSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHHHH
T ss_pred hhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCCCcc
Confidence 999999999852 22 7899999997 89999 99999999999999999999999999999751
Q ss_pred ---CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccC-CCCCCCC
Q 020535 275 ---NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGW-LAPLQII 325 (325)
Q Consensus 275 ---~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~f-G~pl~~~ 325 (325)
.|+......++..|+ ++.++| +++++++. ++|+++|+|| |+||+++
T Consensus 239 ~~~~g~~~~~~~~~~~r~~~aa~~lG-----~a~~al~~a~~ya~~R~~f~G~~i~~~ 291 (414)
T 2or0_A 239 AGRPEPLFNMPYSCMFPLGITAAVIG-----ITEGALACHIAVQKDRVAITGQKIKED 291 (414)
T ss_dssp HTCSCSGGGSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCBCTTSCBGGGC
T ss_pred ccCCCccccccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCccccC
Confidence 234455556777887 888889 99999999 9999999999 9999874
No 33
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=1.1e-42 Score=329.98 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHh
Q 020535 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 139 (325)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~ 139 (325)
++++.+++|+++ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++++++.+..|
T Consensus 11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 89 (394)
T 2rfq_A 11 EVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII 89 (394)
T ss_dssp HHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 688999999974 888888888899999999999999999999 999999999999999999999999999988766665
Q ss_pred hhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEE
Q 020535 140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (325)
Q Consensus 140 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a 219 (325)
. ++..+|..+|+++||++|+| +|+.+.|+++| | .|+|++++|||+|||+|.||||+..||+++|++
T Consensus 90 ~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 155 (394)
T 2rfq_A 90 G-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG 155 (394)
T ss_dssp H-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred H-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEee
Confidence 3 56678889999999999999 79989999987 4 589999999999999999999999999999999
Q ss_pred EeCCCC---CeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC--------C-----CChHHHHhh
Q 020535 220 RNTTTN---QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG--------V-----NSFQDTSKV 283 (325)
Q Consensus 220 ~~~~~~---~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~--------~-----~g~~~~~~~ 283 (325)
++++++ ++++|+||++ ||++.+.|+++|+++++++++.|+||+||.+++|+. . .++......
T Consensus 156 ~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~ 233 (394)
T 2rfq_A 156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPW 233 (394)
T ss_dssp EEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSCH
T ss_pred eecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccccH
Confidence 983222 6899999997 899999999999999999999999999999999974 1 234455556
Q ss_pred chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc---cCCCCCCCC
Q 020535 284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS---GWLAPLQII 325 (325)
Q Consensus 284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~---~fG~pl~~~ 325 (325)
++..|+ ++.++| +++++++. ++|+++|+ |||+||+++
T Consensus 234 ~~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~~~~fG~~i~~~ 276 (394)
T 2rfq_A 234 GTIHPTTISAPIVG-----MAYGAYDAHVEHQGKRVRAAFAGEKAKDD 276 (394)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSCTTCGGGSC
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCCcCCCCCcccccC
Confidence 677887 888889 99999999 99999999 999999875
No 34
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=2e-42 Score=331.18 Aligned_cols=243 Identities=15% Similarity=0.097 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHh
Q 020535 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 139 (325)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~ 139 (325)
++++.+++|+. .+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.++++++.+..+
T Consensus 39 ~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 117 (422)
T 2jbr_A 39 SMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL 117 (422)
T ss_dssp CHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 58889999987 5888888888899999999999999999999 999999999999999999999999999988766555
Q ss_pred hhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEE
Q 020535 140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (325)
Q Consensus 140 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a 219 (325)
.++..+|..+|+++||++|+|. |+.+.|+++| | .|+|++++|||+|||+|.||||+..||+++|++
T Consensus 118 -~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 183 (422)
T 2jbr_A 118 -CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGF 183 (422)
T ss_dssp -HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred -HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEEE
Confidence 3566788899999999999996 8989999987 4 579999999999999999999999999999999
Q ss_pred EeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC---------CCC-----hHHHHh
Q 020535 220 RNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---------VNS-----FQDTSK 282 (325)
Q Consensus 220 ~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~---------~~g-----~~~~~~ 282 (325)
++++ +.++++|+||++ ||++.+.|+++|+++++++++.|+||+||.+++||. +.| +.....
T Consensus 184 ~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~~ 261 (422)
T 2jbr_A 184 NRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTP 261 (422)
T ss_dssp EEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSSC
T ss_pred EecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccccc
Confidence 9853 236899999997 899999999999999999999999999999999975 224 555566
Q ss_pred hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc--cCCCCCCCC
Q 020535 283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS--GWLAPLQII 325 (325)
Q Consensus 283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~--~fG~pl~~~ 325 (325)
.++..|+ ++.++| +++++++. ++|+++|+ |||+||+++
T Consensus 262 ~~~~~r~~~aa~~lG-----~a~~al~~a~~ya~~R~~~~fG~~i~~~ 304 (422)
T 2jbr_A 262 YRPYFASGFSAVSLG-----IAERMIEAFKEKQRNRVRAYTGANVGLA 304 (422)
T ss_dssp HHHHHTTHHHHHHHH-----HHHHHHHHHHHHHTTCBCTTTCCBCTTC
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCCccccC
Confidence 6777887 888889 99999999 99999998 999999875
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=1.2e-38 Score=319.77 Aligned_cols=254 Identities=20% Similarity=0.210 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHH-HhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhH
Q 020535 57 SEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTF 135 (325)
Q Consensus 57 ~~~~~l~~~~~~f~~~~~~~~~~~~d-~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~ 135 (325)
+|++++++.+++|+++.-... +.. ....+|++.|+.|++.|++..+|++|| .+..+...+.++++ .+++
T Consensus 29 ~e~~~lr~~vr~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G---~~~~~~~~v~e~~~---~~~~-- 98 (659)
T 1w07_A 29 RHAFEVSDRIARLVASDPVFE--KSNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHFID---QPAY-- 98 (659)
T ss_dssp HHHHHHHHHHHHHHHTCGGGC--CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHC---CCCH--
T ss_pred hHHHHHHHHHHHHHhcCcccc--cCCccCCChHHHHHHHHHHHHHHHHhHHHhC---CCchHHHHHHHHhc---cchh--
Confidence 789999999999998763221 111 123567899999999888877888887 35567666666653 3444
Q ss_pred HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccC
Q 020535 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN 208 (325)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~ 208 (325)
+.+|..++...|..+|+++||++|||++++|+.++|+|+|||++|||+..++|+|+++ +|||+|| |+|.||+|
T Consensus 99 ~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~ 178 (659)
T 1w07_A 99 VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGG 178 (659)
T ss_dssp HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTT
T ss_pred hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecC
Confidence 4566556677888999999999999999999999999999999999999999999999 6889999 99999999
Q ss_pred -CCCCCEEEEEEEeCCC---CCeEEEEEeC-C------CCCeEEeccCCccC---ccccceeeEEEeeeeeCCCCCcCC-
Q 020535 209 -STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG- 273 (325)
Q Consensus 209 -~~~Ad~~~v~a~~~~~---~~~~~~lv~~-~------~~Gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~lg~- 273 (325)
+..||+++|+||++.+ .|+++|+||. + .|||++.+.|+++| +++++++.+.|+||+||.+++||.
T Consensus 179 ~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~~ 258 (659)
T 1w07_A 179 LGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRL 258 (659)
T ss_dssp TTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCSS
T ss_pred CCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhcCCc
Confidence 8999999999998532 3689999994 5 69999999999999 999999999999999999999985
Q ss_pred ------CCCh------HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC-------CCCCC
Q 020535 274 ------VNSF------QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA-------PLQII 325 (325)
Q Consensus 274 ------~~g~------~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~-------pl~~~ 325 (325)
+.++ ......+..+|+ ++.++| +++++++. ++|+++|+|||+ ||+++
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G-----~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~ 327 (659)
T 1w07_A 259 SKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASN-----ALSRAVCIATRYSAVRRQFGAHNGGIETQVIDY 327 (659)
T ss_dssp EEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBCSCC---CCCCBGGGS
T ss_pred CccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCcccCCCCCCcccchhcc
Confidence 2233 345677788888 788889 99999999 999999999998 77763
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.8e-36 Score=297.10 Aligned_cols=221 Identities=15% Similarity=0.095 Sum_probs=189.4
Q ss_pred ChhHHHHHHhCcccCC-c--ccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhh
Q 020535 88 PFHVIPKLGALRVAGG-T--IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164 (325)
Q Consensus 88 p~~~~~~l~~~Gl~~~-~--p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~ 164 (325)
..++++.+.+.||+++ . |++|||.+....... .++..+....+...++. .+...|..+| ++||++|+|+++
T Consensus 88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~----~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~ 161 (541)
T 3djl_A 88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAARFM----LHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL 161 (541)
T ss_dssp HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHH----HHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHH----HHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence 3678999999999999 8 699996444433332 23333333333333443 3456788889 999999999999
Q ss_pred cCCc-------------eeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEE
Q 020535 165 QLNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230 (325)
Q Consensus 165 ~g~~-------------~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~ 230 (325)
+|+. +.|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..||+++|+||++ +++++|
T Consensus 162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~f 238 (541)
T 3djl_A 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCF 238 (541)
T ss_dssp CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEE
T ss_pred CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEE
Confidence 9998 7899999999999999999999999 78899999999999 89999999999996 589999
Q ss_pred EEeCCCC-----CeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHH
Q 020535 231 LVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPA 302 (325)
Q Consensus 231 lv~~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a 302 (325)
+||++.| ||++.+.|+++|+++++++++.|+||+ +++||.. .|+..+...++..|+ ++.++| ++
T Consensus 239 lVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G-----~a 310 (541)
T 3djl_A 239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHA-----MM 310 (541)
T ss_dssp EEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHH-----HH
T ss_pred EEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 9999988 999999999999999999999999996 7899875 489999999999998 778888 99
Q ss_pred HHHHHH-hhhhhhcccCCCCCCCC
Q 020535 303 ETCSDA-GKYSSHDSGWLAPLQII 325 (325)
Q Consensus 303 ~~al~~-~~ya~~R~~fG~pl~~~ 325 (325)
+++++. ++|+++|++||+||+++
T Consensus 311 ~~al~~a~~ya~~R~~fG~~i~~~ 334 (541)
T 3djl_A 311 RRAFSLAIYHAHQRHVFGNPLIQQ 334 (541)
T ss_dssp HHHHHHHHHHHHHCEETTEEGGGS
T ss_pred HHHHHHHHHHHhhCccCCCchhhC
Confidence 999999 99999999999999864
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=2.2e-34 Score=288.67 Aligned_cols=251 Identities=17% Similarity=0.217 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCh-h-------HHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHc
Q 020535 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-H-------VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR 127 (325)
Q Consensus 56 ~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~-~-------~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~ 127 (325)
+++..++++++++|+.+. |..... ....+.. + ..+.|.+. .++|||.+ .... .+.+++..
T Consensus 26 ~~~~~~~r~~~~~~l~~~--p~~~~~-~~~~~~~~e~~~~~~~~~~~l~~~------~~~~~~~~--~~~~-~~~~~~~~ 93 (661)
T 2ddh_A 26 SPENTRRRREIENLILND--PDFQHE-DYNFLTRSQRYEVAVKKSATMVKK------MREYGISD--PEEI-MWFKNSVH 93 (661)
T ss_dssp SHHHHHHHHHHHHHHHTC--GGGCCS-CGGGSCHHHHHHHHHHHHHHHHHH------HHHTTCCC--HHHH-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcC--cccccC-CcCCCCHHHHHHHHHHHHHHHHHH------HHHcCCCC--chHH-HHHHHHhc
Confidence 366778889999988764 321100 0001111 1 11222222 26677765 2333 33667765
Q ss_pred cCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----
Q 020535 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE----- 200 (325)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln----- 200 (325)
.+.+.. +.+|..++...|..+|+++|+++|||++++|+.++|+|+|||++|||+..++|+|+++ +|||+||
T Consensus 94 ~~~~~~--~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~ 171 (661)
T 2ddh_A 94 RGHPEP--LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVT 171 (661)
T ss_dssp TTCCCT--THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSST
T ss_pred cchhhH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCC
Confidence 443333 4466556778899999999999999999999999999999999999999999999999 7889999
Q ss_pred eEeecccC-CCCCCEEEEEEEeCC---CCCeEEEEEe-CC------CCCeEEeccCCccCccccceeeEEEeeeeeCCCC
Q 020535 201 GQKRWIGN-STFADVLVIFARNTT---TNQINGYLVK-KD------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269 (325)
Q Consensus 201 G~K~~it~-~~~Ad~~~v~a~~~~---~~~~~~~lv~-~~------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~ 269 (325)
|+|.||+| +..||+++|+|+++. +.|+++|+|| ++ .|||++.+.|+++|+++++++.+.|+||+||.++
T Consensus 172 G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~ 251 (661)
T 2ddh_A 172 SIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPREN 251 (661)
T ss_dssp TSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGG
T ss_pred eEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHH
Confidence 99999999 789999999999852 2378999999 44 7999999999999999999999999999999999
Q ss_pred CcCCC-----CC-------hHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC-------CCCCC
Q 020535 270 RLPGV-----NS-------FQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA-------PLQII 325 (325)
Q Consensus 270 ~lg~~-----~g-------~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~-------pl~~~ 325 (325)
+||.. +| +......+..+|+ ++.++| +++++++. ++|+++|+|||+ ||+++
T Consensus 252 lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G-----~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 324 (661)
T 2ddh_A 252 MLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQ-----SLSKACTIAIRYSAVRRQSEIKQSEPEPQILDF 324 (661)
T ss_dssp BCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGS
T ss_pred hcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCCCCCcccccccc
Confidence 99872 34 5677778888998 788889 99999999 999999999998 77653
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=99.94 E-value=3.4e-26 Score=221.78 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=119.8
Q ss_pred HHHHhcCC--HHHHHhhchhhhcCCceeEEEecCCCCC--------CCC-CCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535 145 LTIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (325)
Q Consensus 145 ~~l~~~g~--~~q~~~~l~~l~~g~~~~~~a~tEp~~G--------sd~-~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad 213 (325)
.++..+|+ ++||++|||++++|+++.|+|+|||.+| ||+ ..++ ++++++|||+|||+|.|+||++.||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 35568999 9999999999999999999999999874 775 3444 8899999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeEEEEEeCCCCCeEEe---ccCCc----------cCc-cc-cceeeEEEeeeeeCCCCCc--C
Q 020535 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVT---KIENK----------IGL-RI-VQNGDILLKKVFVPDEDRL--P 272 (325)
Q Consensus 214 ~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~---~~~~~----------~G~-~~-~~~~~v~f~~v~Vp~~~~l--g 272 (325)
+++|+++++. .+++++|+||+++|||++. +.+++ +|+ |. .++++|.|+||+||.+++| |
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 9999999741 2358999999999999994 44544 666 63 5778899999999999998 4
Q ss_pred CC-CChHHHHhhchhhhH
Q 020535 273 GV-NSFQDTSKVSEGEET 289 (325)
Q Consensus 273 ~~-~g~~~~~~~l~~~r~ 289 (325)
.. .++......+.+.|+
T Consensus 277 ~~~~g~~~~~~~~~~~r~ 294 (490)
T 1u8v_A 277 EYDFAGMMVERFAGYHRQ 294 (490)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 43 366666677777776
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=99.93 E-value=4.6e-26 Score=220.44 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=127.0
Q ss_pred CHHHHHhhchhhhcCCceeEEEecCCCCC--------CCCCCCceEEE-EeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 020535 152 SEEQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (325)
Q Consensus 152 ~~~q~~~~l~~l~~g~~~~~~a~tEp~~G--------sd~~~~~~~a~-~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~ 222 (325)
.++||++|||++++|+++.|+|+|||++| ||+. +.++++ +++|||+|||+|.|||| +.||+++|+++++
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~ 199 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL 199 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence 47999999999999999999999999976 6775 667765 68999999999999999 9999999999985
Q ss_pred C----CCCeEEEEEeCCCCCeEEe--ccCCc--------cCccc-cceeeEEEeeeeeCCCCCc--CCCC-ChHHH--Hh
Q 020535 223 T----TNQINGYLVKKDAPGLTVT--KIENK--------IGLRI-VQNGDILLKKVFVPDEDRL--PGVN-SFQDT--SK 282 (325)
Q Consensus 223 ~----~~~~~~~lv~~~~~Gv~~~--~~~~~--------~G~~~-~~~~~v~f~~v~Vp~~~~l--g~~~-g~~~~--~~ 282 (325)
. .+++++|+||+++|||++. +.+.. +|.+. .++++|.||||+||.+++| |..+ ++... ..
T Consensus 200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~ 279 (481)
T 2yyk_A 200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG 279 (481)
T ss_dssp CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence 2 2358999999999999994 33332 56664 6788999999999999998 4432 34433 56
Q ss_pred hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhh
Q 020535 283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSH 314 (325)
Q Consensus 283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~ 314 (325)
.++..|+ ++..+| .++.++.. ..++..
T Consensus 280 ~l~~~r~~~~~~~~g-----~a~~~lg~a~~~~~~ 309 (481)
T 2yyk_A 280 ALNHMAHQVVALKTA-----KTEAFLGVAALMAEG 309 (481)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 7788888 667778 88888888 777653
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.89 E-value=5.3e-23 Score=199.36 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=108.8
Q ss_pred cCC--HHHHHhhchhhhcCCceeEEEecCCCC--------CCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEE
Q 020535 150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (325)
Q Consensus 150 ~g~--~~q~~~~l~~l~~g~~~~~~a~tEp~~--------Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a 219 (325)
+|+ .+|+++|||.+++|+++.|+|+|||.+ |||+ .++++ .+++|||+|||+|.||||+..||+++|++
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a 204 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC 204 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence 554 578999999999999999999999986 5788 55443 45688999999999999999999999999
Q ss_pred Ee-CCC--CCeEEEEEeCCCCCeEEeccCCccCc-----cc-----cceeeEEEeeeeeCCCCCc--CCCC-ChHHHHhh
Q 020535 220 RN-TTT--NQINGYLVKKDAPGLTVTKIENKIGL-----RI-----VQNGDILLKKVFVPDEDRL--PGVN-SFQDTSKV 283 (325)
Q Consensus 220 ~~-~~~--~~~~~~lv~~~~~Gv~~~~~~~~~G~-----~~-----~~~~~v~f~~v~Vp~~~~l--g~~~-g~~~~~~~ 283 (325)
++ ++. .++++|+||+++|||++...+..+|. +. ..++.|.|+||+||.+++| |..+ |+..+...
T Consensus 205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~ 284 (515)
T 3hwc_A 205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI 284 (515)
T ss_dssp CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence 98 321 23899999999999999877766662 22 2378999999999999999 6543 66665444
Q ss_pred chhh
Q 020535 284 SEGE 287 (325)
Q Consensus 284 l~~~ 287 (325)
+...
T Consensus 285 ~~~~ 288 (515)
T 3hwc_A 285 FDWV 288 (515)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.66 E-value=3.8e-16 Score=151.51 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=113.0
Q ss_pred HHHHhhchhhhcCCceeEEEecCCCCC-----CCCCCCce-EEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCC---C
Q 020535 154 EQKQKYLPSLAQLNTIACWALTEPAYG-----SDASALNT-TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---T 224 (325)
Q Consensus 154 ~q~~~~l~~l~~g~~~~~~a~tEp~~G-----sd~~~~~~-~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~---~ 224 (325)
+...+|+..+.++++..+.++|+|... +....+.. ..+++++||+|||.|.|+||++.||+++|+++++. .
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 456789999999999999999999631 11111222 34567899999999999999999999999998853 2
Q ss_pred CCeEEEEEeCCCCCeEEeccCCccCc---------ccc-ceeeEEEeeeeeCCCCCc--CCCC-ChHHHHhhchhhhH--
Q 020535 225 NQINGYLVKKDAPGLTVTKIENKIGL---------RIV-QNGDILLKKVFVPDEDRL--PGVN-SFQDTSKVSEGEET-- 289 (325)
Q Consensus 225 ~~~~~~lv~~~~~Gv~~~~~~~~~G~---------~~~-~~~~v~f~~v~Vp~~~~l--g~~~-g~~~~~~~l~~~r~-- 289 (325)
+++++|+||.++|||++.......+. ++. ..+.+.||||+||.++++ |..+ +.......++..|.
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~ 293 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA 293 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence 45789999999999998544443333 222 247799999999999987 5544 55666677777776
Q ss_pred HHhhcccCcHHHHHHHHHH-hhhhh
Q 020535 290 VWSTISSFSDQPAETCSDA-GKYSS 313 (325)
Q Consensus 290 aa~~~G~~~~~~a~~al~~-~~ya~ 313 (325)
++..++ .++.++.. ..+++
T Consensus 294 ~~~~~~-----~~~~~~g~a~~~ae 313 (517)
T 4g5e_A 294 LIRQSV-----RAELMAGLAILITE 313 (517)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHH
Confidence 445555 66666666 66654
Done!