BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020536
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
D Y+VLGV+++A+ ADIK+AY+ LAR++HPD +KD A + F I AYE+LSNE R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 130 YD 131
YD
Sbjct: 78 YD 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
D+Y +LGV + L IK AYR LARKYHPDVSK++ A FK + A+EVL +E R +
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 130 YDRALKFRTDSDRSRR 145
YD+ + R D R+
Sbjct: 89 YDQLWQHRNDPGFGRQ 104
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAVEVFKTIRCAYEVLSNEVTRI 128
D+Y++LGV ++A+ +IK+AY LA+KYHPD +KD +A E F + AYEVLS+EV R
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 129 KYD 131
+YD
Sbjct: 68 QYD 70
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
D+Y++LGV++ A+ D+K+AYR LA K+HPD + A E FK I AY VLSN R +
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 130 YDR 132
YD+
Sbjct: 68 YDQ 70
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 64.3 bits (155), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
D+Y ++GV + L IK AYR LARKYHPDVSK+ A FK + A+EVLS+E R +
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 130 YDRALKFR 137
YD+ + R
Sbjct: 66 YDQMWQHR 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 66 NGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR--AVEVFKTIRCAYEVLSN 123
+G ++Y+VLGV SA+ DIK+AYR LA ++HPD + D++ A + FK + AYEVLS+
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 124 EVTRIKYDRA 133
R YDRA
Sbjct: 66 SKKRSLYDRA 75
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
D+Y+ LG+A+ A+ +IKRAYR A +YHPD +K+ A E FK I AY+VLS+ R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 130 YDR 132
+DR
Sbjct: 64 FDR 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEV-FKTIRCAYEVLSNEVTRI 128
D+Y++LGV+++A +I++AY+ LA KYHPD ++ + E FK I+ AYEVL++ R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 129 KYDR 132
YD+
Sbjct: 64 AYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEV-FKTIRCAYEVLSNEVTRI 128
D+Y++LGV+++A +I++AY+ LA KYHPD ++ + E FK I+ AYEVL++ R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 129 KYDR 132
YD+
Sbjct: 64 AYDQ 67
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTR 127
E +Y VLGV +AT ++K+AYR LA KYHPD K+ E FK I AYEVLS+ R
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKR 62
Query: 128 IKYDRA 133
YD+
Sbjct: 63 ELYDKG 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEV-FKTIRCAYEVLSNEVTRI 128
D+Y++LGV+++A +I++AY+ LA KYHPD ++ + E FK I+ AYEVL++ R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 129 KYDR 132
YD+
Sbjct: 64 AYDQ 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 72 YKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAVEVFKTIRCAYEVLSNEVTRIKY 130
Y VLG+ ++AT DIK++YR LA KYHPD + D+ A + FK I A+ +L++ R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 131 DR 132
D+
Sbjct: 80 DK 81
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTR 127
E +Y VLGV A+ ++K+AYR +A K+HPD K+ E FK I AYEVLS+E R
Sbjct: 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKR 64
Query: 128 IKYDRA 133
YD+
Sbjct: 65 QIYDQG 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 71 HYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKY 130
+Y +LGV +SA+ IK+A+ LA KYHPD +K A F+ I AYE LS+ R +Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 131 D 131
D
Sbjct: 69 D 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 71 HYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR--AVEVFKTIRCAYEVLSNEVTRI 128
+Y++L V +SA+ DIK+AYR A ++HPD + D++ A + FK + AYEVLS++ R
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 129 KYDR 132
YDR
Sbjct: 64 IYDR 67
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 66 NGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR--AVEVFKTIRCAYEVLSN 123
+G D+Y+VL V + A+ IK+AYR LA K+HPD + +++ A FK + AYEVLS+
Sbjct: 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
Query: 124 EVTRIKYDR 132
R YDR
Sbjct: 66 AKKRDIYDR 74
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 72 YKVLGVAQSATLADIKRAYRLLARKYHPD-VSKDSRAVEVFKTIRCAYEVLSNEVTRIKY 130
Y +LGV +AT A IK AY YHPD S + A E F I AY VL + R KY
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 131 DRAL 134
DR L
Sbjct: 80 DRGL 83
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 65 INGEPDH--YKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAVEVFKTIRCAYEVL 121
I G D Y +LGV+++A+ +I++A++ LA K HPD + ++ A F I AYEVL
Sbjct: 15 IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74
Query: 122 SNEVTRIKYDR 132
+E R KYD+
Sbjct: 75 KDEDLRKKYDK 85
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 72 YKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAVEVFKTIRCAYEVLSNEVTRIKY 130
Y +LGV+++A+ +I++A++ LA K HPD + ++ A F I AYEVL +E R KY
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 131 DR 132
D+
Sbjct: 65 DK 66
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDV-SKDSRAVEVFKTIRCAYEVLSNEVTRI 128
D+Y +LG + +++ I +++ A + HPD ++ +AVE F+ ++ A E+L+NE +R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 129 KYD 131
+YD
Sbjct: 81 RYD 83
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTR 127
E Y +LGV+ SA ++K+ YR A KYHPD K + E FK I A+E+L++ R
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 128 IKYDR 132
YD+
Sbjct: 65 EIYDQ 69
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPD-VSKD------SRAVEVFKTIRCAYEVLS 122
D Y +LG SA ++D+K+ Y+ L YHPD S D V+ F I A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 123 NEVTRIKYD 131
NE T+ +YD
Sbjct: 71 NEETKREYD 79
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD----SRAVEVFKTIRCAYEVLSNEV 125
D+YK+LGV ++A +I +AYR LA ++HPD ++ +A + F I A EVLS+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 126 TRIKYD 131
R K+D
Sbjct: 443 MRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD----SRAVEVFKTIRCAYEVLSNEV 125
D+YK+LGV ++A +I +AYR LA ++HPD ++ +A + F I A EVLS+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 126 TRIKYD 131
R K+D
Sbjct: 443 XRKKFD 448
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 70 DHYKVLGVAQSATLADIKRAYRLLARKYHPD-VSKDSRA------VEVFKTIRCAYEVLS 122
D Y +LG SA ++D+K+ Y+ L YHPD S D A ++ F I A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 123 NEVTRIKYD 131
NE T+ KYD
Sbjct: 77 NEETKKKYD 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 86 IKRAYRLLARKYHPDVSKDSR----AVEVFKTIRCAYEVLSNEVTRIKYDRAL 134
+ +AYR LARK+HPD K+ A E F+ I AYE L ++ + YD L
Sbjct: 33 LAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 65 INGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVL 121
I D + +LGV A+ ++ +AYR LA HPD + + FK + A L
Sbjct: 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 86 IKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR 145
+++ YR L ++HPD+++ + E T+ AY L + + R +Y L D + +
Sbjct: 27 LRKEYRQLQAQHHPDMAQ--QGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQT 84
Query: 146 GNRRYSSE 153
N +S+
Sbjct: 85 SNEVTTSD 92
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 86 IKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR 145
+++ YR L ++HPD+++ + E T+ AY L + + R +Y L D + +
Sbjct: 35 LRKEYRQLQAQHHPDMAQ--QGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQT 92
Query: 146 GNRRYSSE 153
N +S+
Sbjct: 93 SNEVTTSD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,027,054
Number of Sequences: 62578
Number of extensions: 280117
Number of successful extensions: 676
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 30
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)