BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020537
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 31 DDRGWNVLHFAMVSFSIRQLKRLLNKYPVVRNLIFEKDEKGNTPFHVLAAVCPH------ 84
DD GW+ LH A + +K LL K V + ++ G TP H A+ H
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV----NQNGCTPLHYAASKNRHEIAVML 126
Query: 85 -PGNDGYDIVPWKIAKGYYQAVNKQNISVEHI 115
G D A ++A K N+ + HI
Sbjct: 127 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 158
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 31 DDRGWNVLHFAMVSFSIRQLKRLLNKYPVVRNLIFEKDEKGNTPFHVLAAVCPH------ 84
DD GW+ LH A + +K LL K V + ++ G TP H A+ H
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV----NQNGCTPLHYAASKNRHEIAVML 125
Query: 85 -PGNDGYDIVPWKIAKGYYQAVNKQNISVEHI 115
G D A ++A K N+ + HI
Sbjct: 126 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 157
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 1 MTALHLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVV 60
+T LHLAA G+ I ++ H + + D G+ LH A ++ + ++ LL KY
Sbjct: 48 LTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLL-KYGAD 105
Query: 61 RNLIFEKDEKGNTPFHVLA 79
N D G+TP H+ A
Sbjct: 106 VNAF---DMTGSTPLHLAA 121
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 58 PVVRNLIFEKDEK-GNTPFHVLAAVCPHPG-NDGYDIVPWKIAKGYYQAVNKQNIS 111
PV NL+ EK G T FH + P G NDG+ V WK + Y N QNI+
Sbjct: 85 PVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAV-WKSHQNEYTXENLQNIA 139
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 31 DDRGWNVLHFAMVSFSIRQLKRLLNKYPVVRNLIFEKDEKGNTPFHVLAAVCPH------ 84
DD GW+ LH A + +K LL K V + ++ G TP H A+ H
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEIAVML 125
Query: 85 -PGNDGYDIVPWKIAKGYYQAVNKQNISVEHI 115
G D A ++A K N+ + HI
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 31 DDRGWNVLHFAMVSFSIRQLKRLLNKYPVVRNLIFEKDEKGNTPFHVLAAVCPH------ 84
DD GW+ LH A + +K LL K V + ++ G TP H A+ H
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEIAVML 125
Query: 85 -PGNDGYDIVPWKIAKGYYQAVNKQNISVEHI 115
G D A ++A K N+ + HI
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 1 MTALHLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVV 60
+T LHLAA G+ I ++ H + +D G LH A + + ++ LL K+
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLL-KHGAD 105
Query: 61 RNLIFEKDEKGNTPFHVLAAVCPH 84
N + D G+TP H LAA+ H
Sbjct: 106 VNAV---DTWGDTPLH-LAAIMGH 125
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 1 MTALHLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVV 60
+T LHLAA G+ I ++ H + +D G LH A + + ++ LL K+
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLL-KHGAD 105
Query: 61 RNLIFEKDEKGNTPFHVLAAVCPH 84
N + D G+TP H LAA+ H
Sbjct: 106 VNAV---DTWGDTPLH-LAAIMGH 125
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 2 TALHLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVVR 61
T LHLAA G+ + + +++ + D G LH A + + +K LL V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 62 NLIFEKDEKGNTPFHVLA 79
KD+ G TP H+ A
Sbjct: 63 ----AKDKNGRTPLHLAA 76
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 2 TALHLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVVR 61
T LHLAA G+ + + +++ + D G LH A + + +K LL V
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Query: 62 NLIFEKDEKGNTPFHVLA 79
KD+ G TP H+ A
Sbjct: 96 ----AKDKNGRTPLHLAA 109
>pdb|4ATM|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1 At 1.8 Angstrom Resolution Featuring Increased
Order At The N-Terminus
Length = 243
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 13 SWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVVRNLIFEKDEK-- 70
W R+ + E C+++ W H +V S+ L L ++P ++N I ++ K
Sbjct: 89 DWYGREDVKMVGEKCDVL----WEDFHQKLVDESLLTLDTYLGQFPDIKNRIAKRSRKLV 144
Query: 71 -GNTPFHVLAAVCPHPGND 88
++ H L A+ D
Sbjct: 145 DYDSARHHLEALQSSKRKD 163
>pdb|2OA9|A Chain A, Restriction Endonuclease Mvai In The Absence Of Dna
pdb|2OA9|B Chain B, Restriction Endonuclease Mvai In The Absence Of Dna
pdb|2OAA|A Chain A, Restriction Endonuclease Mvai-Cognate Dna Substrate
Complex
pdb|2OAA|B Chain B, Restriction Endonuclease Mvai-Cognate Dna Substrate
Complex
Length = 249
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 5 HLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYP------ 58
H +GN+ I + D + + +D ++ + + + L L K P
Sbjct: 24 HETKRKGNTGIGKTFEDLLEKEEDNLDAPDFHDIEIKTHETAAKSLLTLFTKSPTNPRGA 83
Query: 59 --VVRNLIFEKDEKGNTPFHVLAAVCPHPGNDGYDI-----VPWKIAKGYYQAVNKQNIS 111
++RN +KDE GN H + ++ Y+ + W+ + +KQ+I
Sbjct: 84 NTMLRNRYGKKDEYGNNILHQTVSGNRKTNSNSYNYDFKIDIDWESQVVRLEVFDKQDIM 143
Query: 112 VEHINRYGFPELEKEIEK 129
+++ + F L+ +++K
Sbjct: 144 IDNSVYWSFDSLQNQLDK 161
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 13 SWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVVRNLIFEKDEK-- 70
W R+ + E C+++ W H +V S+ L L ++P ++N I ++ K
Sbjct: 57 DWYGREDVKMVGEKCDVL----WEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLV 112
Query: 71 -GNTPFHVLAAVCPHPGND 88
++ H L A+ D
Sbjct: 113 DYDSARHHLEALQSSKRKD 131
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 2 TALHLAAGQGNSWIARQIIDHCPECCELVDDRGWNVLHFAMVSFSIRQLKRLLNKYPVVR 61
T LHLAA G+ + + +++ + D G LH A + + +K LL V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 62 NLIFEKDEKGNTPFHVLA 79
KD+ G TP H+ A
Sbjct: 63 ----AKDKNGRTPLHLAA 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,412,552
Number of Sequences: 62578
Number of extensions: 365503
Number of successful extensions: 954
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 22
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)