BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020539
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 281 bits (718), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 162/321 (50%), Positives = 217/321 (67%), Gaps = 24/321 (7%)
Query: 6 PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
P T + S P H R+ LR AAR LR A RR+M REPS+ VRE
Sbjct: 40 PPTVTRTISVDEESNPIHRSARRQGLRE--------AARFLRHAGSRRMM-REPSMLVRE 90
Query: 66 TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
TAAEQLEERQS WAYS+P++ LD+LWNL FV + AVL +S +EKP +PLR+ +VGY +Q
Sbjct: 91 TAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQ 150
Query: 126 CLFHVFCVSLEFKRRRRG----EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLE 181
C H+ CV +E++RRRR +G G + S S E+R GE S+ AK+LE
Sbjct: 151 CWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDR--GET-SNPAKHLE 207
Query: 182 SANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIA 241
SANT SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC+IG+A
Sbjct: 208 SANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLA 267
Query: 242 VCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDT 301
VCCCLPCI+ ILYA+ ++EGA++ +ID++PKF+F++ +EK++G+ + GIM EC T
Sbjct: 268 VCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTECGT 323
Query: 302 DMPMEHVISEDDAVSLSLCCV 322
D P+E +S +DA CC+
Sbjct: 324 DSPIERSLSPEDAE----CCI 340
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 257 bits (656), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 153/316 (48%), Positives = 204/316 (64%), Gaps = 29/316 (9%)
Query: 28 RRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVL 87
RR +RR LR AAR L RAS R+M REPS+ VRE AAEQLEERQS WAYS+P++VL
Sbjct: 48 RRSVRRQG--LR-EAARFLSRASSGRVM-REPSMLVREAAAEQLEERQSDWAYSKPVVVL 103
Query: 88 DVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVV 147
D++WNL FV VA A+L +S E P +PLR+ ++GYALQC+ H+ CV +E++RR R
Sbjct: 104 DIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNR 163
Query: 148 --------------------FGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFL 187
+ GS + D SSVAK+LESANT
Sbjct: 164 TTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223
Query: 188 SFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLP 247
SF+WWI+GFYW++A G+ L SP++YWL + FL FDV FV+ CV +AC+IGIAVCCCLP
Sbjct: 224 SFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLP 283
Query: 248 CILGILYALTEREGATEEEIDRLPKFKFSRI-DGLEKVNGEIQEPFGGIMIECDTDMPME 306
CI+ +LYA+ ++EGA++E+I++L KFKF ++ D + N E Q GIM EC TD P+E
Sbjct: 284 CIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIE 343
Query: 307 HVISEDDAVSLSLCCV 322
H + ++DA CC+
Sbjct: 344 HTLLQEDAE----CCI 355
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 253 bits (647), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 155/301 (51%), Positives = 208/301 (69%), Gaps = 25/301 (8%)
Query: 42 AARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFA 101
AARLLR AS R+M+REPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA A
Sbjct: 32 AARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATA 91
Query: 102 VLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161
VL +S +E P +PLR+ I+GY LQC+ H+ CV +E++RR S SSS++ +
Sbjct: 92 VLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSS 151
Query: 162 G-DEEE----------------RFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
DEEE + EN+S AK+LESANT +SF+WW++GFYW+++ G+
Sbjct: 152 SMDEEEGLGLSRNSDERYLELGQLENENNS-FAKHLESANTMISFIWWVIGFYWVSSGGQ 210
Query: 205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATE 264
L SPQLYWLC+ FL FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+EGA++
Sbjct: 211 ELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASK 270
Query: 265 EEIDRLPKFKFSRI-DGLEKVNGEIQEP--FGGIMIECDTDMPMEHVISEDDAVSLSLCC 321
E+ID+L KFKF ++ D ++ E Q GG+M EC TD P+EH + +DA CC
Sbjct: 271 EDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE----CC 326
Query: 322 V 322
+
Sbjct: 327 I 327
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 141/243 (58%), Gaps = 4/243 (1%)
Query: 41 AAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAF 100
A A LL R +G R PS+ VRETAA LEER+ W YS+P++ D+LWN V+ +
Sbjct: 38 ALAVLLGRITGHR----APSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASA 93
Query: 101 AVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTV 160
+L ++ E+P P+R+ I Y LQCLFHV V E+ RR +S
Sbjct: 94 VMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIE 153
Query: 161 TGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTF 220
E++ S K ES NT +SF+WWI+GFYW+ G+ L+ +P LYWL V F
Sbjct: 154 YDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIF 213
Query: 221 LAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDG 280
LA DV F + CV +ACL+GIA+CCCLPCI+ +LYA+ EG +E E+ LP +KF
Sbjct: 214 LAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHS 273
Query: 281 LEK 283
EK
Sbjct: 274 NEK 276
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 219 TFLAFDVVFVMICVGVACLIGIAVCCCLPCIL----------GILYALTEREGATEEEID 268
T L+ D + ++ + + +G+ V CCL CI +L++ R G +E I+
Sbjct: 44 TNLSADSIIAIVVLAIFISLGM-VSCCLHCIFYREEIGAAGQDVLHSRARR-GLEKEVIE 101
Query: 269 RLPKFKFSRIDGLEKVNGEIQ 289
P F +S + GL+ G ++
Sbjct: 102 SFPTFLYSEVKGLKIGKGGVE 122
>sp|Q32NM7|ILDR1_XENLA Immunoglobulin-like domain-containing receptor 1 OS=Xenopus laevis
GN=ildr1 PE=2 SV=1
Length = 545
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 190 LWWIVGFYWITASGETLISCSPQ-------LYWLCVTFLAFDVVFVMICVGV 234
+WW G Y+ + + S P L+WL V F+ +F+ + +G+
Sbjct: 133 MWWDHGVYFCSVEAQGDTSGDPDKEVKLVVLHWLTVLFIILGALFLFLLIGI 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,183,480
Number of Sequences: 539616
Number of extensions: 5146402
Number of successful extensions: 16564
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 16552
Number of HSP's gapped (non-prelim): 13
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)