Query 020539
Match_columns 325
No_of_seqs 125 out of 142
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03602 streptolysinS bacter 59.8 3.3 7.2E-05 31.2 0.3 10 316-325 26-35 (56)
2 PF06814 Lung_7-TM_R: Lung sev 44.9 1.3E+02 0.0029 28.6 8.6 120 83-225 46-166 (295)
3 KOG4628 Predicted E3 ubiquitin 39.6 38 0.00083 34.3 4.1 41 241-281 184-226 (348)
4 PF01456 Mucin: Mucin-like gly 38.6 13 0.00028 31.6 0.6 11 236-247 9-19 (143)
5 PF04505 Dispanin: Interferon- 37.7 20 0.00043 28.7 1.5 17 240-256 25-42 (82)
6 PF02326 YMF19: Plant ATP synt 29.4 28 0.0006 28.3 1.1 33 211-257 10-42 (86)
7 COG3671 Predicted membrane pro 27.7 1.1E+02 0.0023 27.0 4.4 45 214-258 70-114 (125)
8 PF02656 DUF202: Domain of unk 25.3 99 0.0021 23.3 3.4 45 92-136 17-64 (73)
9 PF03839 Sec62: Translocation 24.7 2.2E+02 0.0047 27.2 6.3 17 184-200 161-180 (224)
10 KOG1341 Na+/K+ transporter [In 21.5 92 0.002 34.4 3.4 29 173-201 456-488 (854)
11 PF11712 Vma12: Endoplasmic re 21.5 1.4E+02 0.0031 25.7 4.1 26 173-198 79-104 (142)
12 KOG2927 Membrane component of 20.9 2.5E+02 0.0054 28.9 6.1 16 185-200 241-259 (372)
13 PF12751 Vac7: Vacuolar segreg 20.5 1.3E+02 0.0029 31.0 4.2 34 75-108 296-329 (387)
No 1
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=59.80 E-value=3.3 Score=31.17 Aligned_cols=10 Identities=40% Similarity=1.238 Sum_probs=5.9
Q ss_pred ceeeeecccC
Q 020539 316 SLSLCCVLCF 325 (325)
Q Consensus 316 CCi~~~~~~~ 325 (325)
||.|||+-||
T Consensus 26 cccccc~cc~ 35 (56)
T TIGR03602 26 CCCCCCCCCF 35 (56)
T ss_pred eEEEeccEEE
Confidence 6666665554
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=44.94 E-value=1.3e+02 Score=28.57 Aligned_cols=120 Identities=11% Similarity=0.114 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcc-cCCCCCCchhhhhhhhhhhhhhHHhhhhhhhhhcccCCCccccCCCCCCCCCCCC
Q 020539 83 PIIVLDVLWNLVFVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161 (325)
Q Consensus 83 pwi~lelvwnlaqIvaaivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rYr~rn~~~~~~~~~~~~~~~~~s~~ 161 (325)
|-..+-.+..++..+.++.-+... ++-+.-.|+.-||.+..+-..+.+.+.+..|...|.......
T Consensus 46 pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~------------- 112 (295)
T PF06814_consen 46 PLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINKTGTPSE------------- 112 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc-------------
Confidence 445566777777777777766666 455667899999999999888999998888888776431100
Q ss_pred CcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeeecCCCcccCCCCchhhhhHHHhhhch
Q 020539 162 GDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDV 225 (325)
Q Consensus 162 ~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~~gg~ss~~dAP~LYwLCivFLAF~~ 225 (325)
....-..+...+|.++ ++++=.++|--|-+. ...+.+.--+.-.+-+.+..++.
T Consensus 113 -------~~~~~~~i~~~~k~~~--~~~llllis~Gygiv-kp~L~~~~~~v~~l~i~~~v~~~ 166 (295)
T PF06814_consen 113 -------GWMIFAYIFSALKRTL--SFFLLLLISLGYGIV-KPSLGRREKKVLMLVILYFVFSN 166 (295)
T ss_pred -------hHHHHHHHHHHHHHHH--HHHHHHHHhcchhee-ccccCcceeehhHHHHHHHHHHH
Confidence 0012356666666444 444446777778662 34443333334444444444443
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.60 E-value=38 Score=34.27 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHhhhh--ccCCCCHHHhhcCCCcceeecCCc
Q 020539 241 AVCCCLPCILGILYALT--EREGATEEEIDRLPKFKFSRIDGL 281 (325)
Q Consensus 241 alCCCLPCIIaiLya~~--d~eGAS~e~I~~LP~yKFk~~~~~ 281 (325)
+.|+...-+....++.. +.+...++.+.+||.++|+..++.
T Consensus 184 ~~~f~i~~~~~~~~~r~~~~~~r~~k~~l~~~p~~~f~~~~~~ 226 (348)
T KOG4628|consen 184 VTCFFIYRIRRLIRARNRLRRNRLIKRLLKKLPVRTFTKGDDE 226 (348)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhCCcEEecccccc
Confidence 45566665666565554 467999999999999999976544
No 4
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=38.62 E-value=13 Score=31.56 Aligned_cols=11 Identities=55% Similarity=1.606 Sum_probs=8.7
Q ss_pred Hhhhhhhhhhhh
Q 020539 236 CLIGIAVCCCLP 247 (325)
Q Consensus 236 cli~ialCCCLP 247 (325)
-|+.+||||| |
T Consensus 9 alLvlaLcCC-p 19 (143)
T PF01456_consen 9 ALLVLALCCC-P 19 (143)
T ss_pred HHHHHHHHcC-c
Confidence 3777889999 5
No 5
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=37.69 E-value=20 Score=28.66 Aligned_cols=17 Identities=41% Similarity=1.163 Sum_probs=11.0
Q ss_pred hhhhhhhhH-HHHHHhhh
Q 020539 240 IAVCCCLPC-ILGILYAL 256 (325)
Q Consensus 240 ialCCCLPC-IIaiLya~ 256 (325)
..+|||+|+ |+++.|+.
T Consensus 25 s~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 25 STLCCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHHHHhhHHHHHheech
Confidence 345899995 45555664
No 6
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=29.40 E-value=28 Score=28.28 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=23.0
Q ss_pred CchhhhhHHHhhhchhhhhhhHHhhHhhhhhhhhhhhHHHHHHhhhh
Q 020539 211 PQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALT 257 (325)
Q Consensus 211 P~LYwLCivFLAF~~~fvvicyalpcli~ialCCCLPCIIaiLya~~ 257 (325)
+|.+|+|+.|++|=.+ + +-..||-|..+|-.+.
T Consensus 10 sQ~fW~~i~f~~~y~~---~-----------~~~~lP~i~~~lk~R~ 42 (86)
T PF02326_consen 10 SQYFWLLIFFFFFYIF---L-----------VNFILPKISRILKLRS 42 (86)
T ss_pred HHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHH
Confidence 5789999998765442 1 1366898888886554
No 7
>COG3671 Predicted membrane protein [Function unknown]
Probab=27.70 E-value=1.1e+02 Score=27.05 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=29.6
Q ss_pred hhhhHHHhhhchhhhhhhHHhhHhhhhhhhhhhhHHHHHHhhhhc
Q 020539 214 YWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTE 258 (325)
Q Consensus 214 YwLCivFLAF~~~fvvicyalpcli~ialCCCLPCIIaiLya~~d 258 (325)
||+|+.+--.+.++..+..++..+....+=..+=+++.+.|-..+
T Consensus 70 Fw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g 114 (125)
T COG3671 70 FWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEG 114 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455555544455554555566666677777888888888887765
No 8
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=25.27 E-value=99 Score=23.33 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhcccCCCCCC---chhhhhhhhhhhhhhHHhhhhhh
Q 020539 92 NLVFVIVAFAVLGVSINEKPEV---PLRLRIVGYALQCLFHVFCVSLE 136 (325)
Q Consensus 92 nlaqIvaaivVL~lSk~E~P~~---PLr~WIvGYa~gCv~~l~lv~~r 136 (325)
.++.++++++++-.....++.. .--..++|+.+-.+..+.+++..
T Consensus 17 ~l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (73)
T PF02656_consen 17 ALALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYGI 64 (73)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776544321 33466888888887777776643
No 9
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=24.74 E-value=2.2e+02 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.747 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhh---eeeee
Q 020539 184 NTFLSFLWWIVG---FYWIT 200 (325)
Q Consensus 184 lt~Ff~VWfVVG---f~WV~ 200 (325)
+-+|.++|++.| =.|+|
T Consensus 161 lilf~i~w~~~~g~~~fWlf 180 (224)
T PF03839_consen 161 LILFLITWFFTGGKHGFWLF 180 (224)
T ss_pred HHHHHHHHHHhcCCCCEEeC
Confidence 456899999983 37999
No 10
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=21.48 E-value=92 Score=34.43 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=24.3
Q ss_pred chHHHHHhHHHHHHHHHHHhhhhee----eeec
Q 020539 173 DSSVAKNLESANTFLSFLWWIVGFY----WITA 201 (325)
Q Consensus 173 ~~~l~k~le~~lt~Ff~VWfVVGf~----WV~~ 201 (325)
.++-.|.+-+++..++.+|=++||| |+..
T Consensus 456 EyRAlk~Lcsil~vY~l~~nIvafV~llv~i~t 488 (854)
T KOG1341|consen 456 EYRALKCLCSILVVYFLGWNIVAFVTLLVFIYT 488 (854)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677888999999999999999987 6653
No 11
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.47 E-value=1.4e+02 Score=25.72 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=20.8
Q ss_pred chHHHHHhHHHHHHHHHHHhhhheee
Q 020539 173 DSSVAKNLESANTFLSFLWWIVGFYW 198 (325)
Q Consensus 173 ~~~l~k~le~~lt~Ff~VWfVVGf~W 198 (325)
.+.+++-+=++..+|+++||..+-.|
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888899999999997776555
No 12
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.89 E-value=2.5e+02 Score=28.93 Aligned_cols=16 Identities=19% Similarity=0.833 Sum_probs=12.2
Q ss_pred HHHHHHHhhhh---eeeee
Q 020539 185 TFLSFLWWIVG---FYWIT 200 (325)
Q Consensus 185 t~Ff~VWfVVG---f~WV~ 200 (325)
-+|..+|.+.| =+|+|
T Consensus 241 ILF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 241 ILFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHHhCCCCceEec
Confidence 35777888887 56988
No 13
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=20.48 E-value=1.3e+02 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=20.7
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhhcccC
Q 020539 75 QSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSIN 108 (325)
Q Consensus 75 ~s~wayS~pwi~lelvwnlaqIvaaivVL~lSk~ 108 (325)
.+-|.-.+.+++|-|++.|+--.+..+||+.+|.
T Consensus 296 r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 296 RSWFSRFASCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 4566666677777776655544455566666553
Done!