Query 020539
Match_columns 325
No_of_seqs 125 out of 142
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 80.8 0.64 2.2E-05 35.5 1.7 21 259-279 14-34 (91)
2 1x4j_A Ring finger protein 38; 72.4 0.73 2.5E-05 33.5 -0.1 18 262-279 1-18 (75)
3 4gc0_A D-xylose-proton symport 21.2 65 0.0022 29.4 3.5 15 256-270 463-477 (491)
4 2ks1_B Epidermal growth factor 20.8 80 0.0028 21.9 3.0 33 109-144 6-41 (44)
5 1wy3_A Villin; structural prot 19.6 28 0.00094 23.2 0.4 15 261-275 11-25 (35)
6 1und_A Advillin, P92; actin bi 17.8 32 0.0011 23.1 0.4 15 261-275 13-27 (37)
7 1xio_A Anabaena sensory rhodop 14.4 63 0.0022 29.6 1.6 105 71-201 69-186 (261)
8 1m0k_A BR, bacteriorhodopsin; 13.7 1E+02 0.0036 28.1 2.9 102 74-201 95-205 (262)
9 2l6x_A GPR, green-light absorb 13.5 1.1E+02 0.0036 27.7 2.8 103 72-201 75-190 (243)
10 2l2t_A Receptor tyrosine-prote 13.1 1.3E+02 0.0046 20.9 2.6 32 110-144 6-40 (44)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=80.80 E-value=0.64 Score=35.47 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.4
Q ss_pred cCCCCHHHhhcCCCcceeecC
Q 020539 259 REGATEEEIDRLPKFKFSRID 279 (325)
Q Consensus 259 ~eGAS~e~I~~LP~yKFk~~~ 279 (325)
..|+|++.|++||.++++...
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~ 34 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDH 34 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTC
T ss_pred CCCCCHHHHHhCCCeeecccc
Confidence 689999999999999987543
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.37 E-value=0.73 Score=33.51 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=14.9
Q ss_pred CCHHHhhcCCCcceeecC
Q 020539 262 ATEEEIDRLPKFKFSRID 279 (325)
Q Consensus 262 AS~e~I~~LP~yKFk~~~ 279 (325)
+|.+.|++||+|+|+..+
T Consensus 1 gs~~~i~~lp~~~~~~~~ 18 (75)
T 1x4j_A 1 GSSGSSGQLPSYRFNPNN 18 (75)
T ss_dssp CCCCCCSSCCCEEBCSSS
T ss_pred CcHhhHhhCCcEEecCcc
Confidence 467889999999998654
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=21.16 E-value=65 Score=29.39 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.8
Q ss_pred hhccCCCCHHHhhcC
Q 020539 256 LTEREGATEEEIDRL 270 (325)
Q Consensus 256 ~~d~eGAS~e~I~~L 270 (325)
+-+++|-|-|||++|
T Consensus 463 ~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 463 VPETKGKTLEELEAL 477 (491)
T ss_dssp CCCCTTCCHHHHGGG
T ss_pred ecCCCCCCHHHHHHH
Confidence 446799999999987
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.77 E-value=80 Score=21.90 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCCCCchhhhhhhhhhhhh---hHHhhhhhhhhhcccCC
Q 020539 109 EKPEVPLRLRIVGYALQCL---FHVFCVSLEFKRRRRGE 144 (325)
Q Consensus 109 E~P~~PLr~WIvGYa~gCv---~~l~lv~~rYr~rn~~~ 144 (325)
|.+++|. |++-.+|-+ +.+.+++|.|++|++.+
T Consensus 6 ~~s~~~~---IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 6 NGPKIPS---IATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp CCSCSSS---STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCcce---EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3455555 455555533 34555667777766543
No 5
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=19.63 E-value=28 Score=23.21 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.4
Q ss_pred CCCHHHhhcCCCcce
Q 020539 261 GATEEEIDRLPKFKF 275 (325)
Q Consensus 261 GAS~e~I~~LP~yKF 275 (325)
|-|.++.++||.||=
T Consensus 11 gmsr~eF~~LP~WKq 25 (35)
T 1wy3_A 11 GMTRSAFANLPLWLQ 25 (35)
T ss_dssp SSCHHHHHHSCHHHH
T ss_pred CCCHHHHHHCcHHHH
Confidence 789999999999983
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=17.78 E-value=32 Score=23.12 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.4
Q ss_pred CCCHHHhhcCCCcce
Q 020539 261 GATEEEIDRLPKFKF 275 (325)
Q Consensus 261 GAS~e~I~~LP~yKF 275 (325)
|-|.++.++||.||=
T Consensus 13 gmsr~eF~~LP~WKq 27 (37)
T 1und_A 13 GITRGQFAALPGWKQ 27 (37)
T ss_dssp SSCHHHHHHSCHHHH
T ss_pred CcCHHHHHHChHHHH
Confidence 789999999999983
No 7
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=14.37 E-value=63 Score=29.62 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=61.9
Q ss_pred hhhhccccccCccchhhHHHHH-----------HHH-HHHHHhhhhcc-cCCCCCCchhhhhhhhhhhhhhHHhhhhhhh
Q 020539 71 LEERQSYWAYSRPIIVLDVLWN-----------LVF-VIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEF 137 (325)
Q Consensus 71 leer~s~wayS~pwi~lelvwn-----------laq-IvaaivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rY 137 (325)
.--|--||.-.-|.+++|+... +.. |++++++++.- -.|--.....-| .+|+++|++.+.++|.-+
T Consensus 69 ~~~RYiDWllTvPLllvel~Li~l~~ag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~~~l~Ily~l~ 147 (261)
T 1xio_A 69 HYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRY-LWYICGVCAFLIILWGIW 147 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998755 333 44444444431 122211111233 468999999999998666
Q ss_pred hhcccCCCccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeeec
Q 020539 138 KRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (325)
Q Consensus 138 r~rn~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~~ 201 (325)
..-.+..+ +....+.+.++..--++.+.|.+--..|...
T Consensus 148 ~~~~~~a~-------------------------~~~~~v~~~f~~l~~~v~v~W~iYPI~w~l~ 186 (261)
T 1xio_A 148 NPLRAKTR-------------------------TQSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (261)
T ss_dssp THHHHHHT-------------------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 53211100 0012334445555566788888877778874
No 8
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=13.73 E-value=1e+02 Score=28.12 Aligned_cols=102 Identities=16% Similarity=0.284 Sum_probs=59.1
Q ss_pred hccccccCccchhhHHHHH-------HH-HHHHHHhhhhcc-cCCCCCCchhhhhhhhhhhhhhHHhhhhhhhhhcccCC
Q 020539 74 RQSYWAYSRPIIVLDVLWN-------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (325)
Q Consensus 74 r~s~wayS~pwi~lelvwn-------la-qIvaaivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rYr~rn~~~ 144 (325)
|--||--.-|.+++|+... +. .|++++++++.- -.|--.....-| .+|+++|++.+.++|.-+..-.+..
T Consensus 95 RYidWllTvPLllve~~Llag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~a~l~Ily~l~~~~~~~a 173 (262)
T 1m0k_A 95 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFFGFTSKA 173 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668989999999998642 22 344444444431 122110112344 5789999999999986665321110
Q ss_pred CccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeeec
Q 020539 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (325)
Q Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~~ 201 (325)
. +....+-+.++..--++.+.|.+--..|...
T Consensus 174 -----~--------------------~~~~~v~~~f~~l~~~v~v~W~iYPi~w~l~ 205 (262)
T 1m0k_A 174 -----E--------------------SMRPEVASTFKVLRNVTVVLWSAYPVVWLIG 205 (262)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----H--------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0112344455555566788888877778874
No 9
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=13.51 E-value=1.1e+02 Score=27.67 Aligned_cols=103 Identities=13% Similarity=0.255 Sum_probs=61.0
Q ss_pred hhhccccccCccchhhHHHHH-----------HH-HHHHHHhhhhcc-cCCCCCCchhhhhhhhhhhhhhHHhhhhhhhh
Q 020539 72 EERQSYWAYSRPIIVLDVLWN-----------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFK 138 (325)
Q Consensus 72 eer~s~wayS~pwi~lelvwn-----------la-qIvaaivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rYr 138 (325)
.-|--||.-.-|++++|+... +. .|++++++++.- -.|--..+ .| .+|+++|++-+-++|.-+.
T Consensus 75 ~~RYidWllTvPLllvel~Li~~~~g~~~~~~~~~li~as~vMiv~G~~g~~~~~~--kw-~~f~is~~~~l~Ily~l~~ 151 (243)
T 2l6x_A 75 VFRYIDWLLTVPLLICEFYLILAAATNVAGSLFKKLLVGSLVMLVFGYMGEAGIMA--AW-PAFIIGCLAWVYMIYELWA 151 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCTHHHHHHHHHHHHHHHHHHHHHHCSSC--TT-THHHHHHHHHHHHHHHHTT
T ss_pred eeehhcHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHhccc--HH-HHHHHHHHHHHHHHHHHHH
Confidence 349999999999999997754 22 355555555431 11110011 33 5689999999999886555
Q ss_pred hcccCCCccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeeec
Q 020539 139 RRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (325)
Q Consensus 139 ~rn~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~~ 201 (325)
--.+... + +....+.+-++..--++.++|.+--..|...
T Consensus 152 ~~~~~~a----~--------------------~~~~~v~~~f~~l~~~~~v~W~iYPi~w~l~ 190 (243)
T 2l6x_A 152 GEGKSAC----N--------------------TASPAVQSAYNTMMYIIIFGWAIYPVGYFTG 190 (243)
T ss_dssp CSTTTSS----S--------------------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHH----h--------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2101100 0 0112334445555566788888877788884
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.06 E-value=1.3e+02 Score=20.86 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=18.1
Q ss_pred CCCCchhhhhhhhhhhhh---hHHhhhhhhhhhcccCC
Q 020539 110 KPEVPLRLRIVGYALQCL---FHVFCVSLEFKRRRRGE 144 (325)
Q Consensus 110 ~P~~PLr~WIvGYa~gCv---~~l~lv~~rYr~rn~~~ 144 (325)
.|+.|. |++-.+|-+ +.+.+++|-|++|++.+
T Consensus 6 ~s~~~a---IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 6 HARTPL---IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SCSSHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCcce---EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 355555 556666533 34555666777666543
Done!