Query 020539
Match_columns 325
No_of_seqs 125 out of 142
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 34.3 6.8 0.0005 32.7 1.5 102 74-201 72-186 (226)
2 d1uaza_ f.13.1.1 (A:) Archaerh 25.2 19 0.0014 30.3 2.9 101 74-200 88-197 (236)
3 d1yu8x1 a.14.1.1 (X:42-76) Vil 24.9 9.5 0.00069 23.9 0.6 16 261-276 11-26 (35)
4 d1unda_ a.14.1.1 (A:) Advillin 21.6 11 0.0008 23.8 0.4 15 261-275 12-26 (36)
5 d1e12a_ f.13.1.1 (A:) Halorhod 20.4 9 0.00065 32.5 -0.3 100 74-201 85-194 (239)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 17.2 30 0.0022 28.9 2.4 101 74-200 78-187 (227)
7 d1v54l_ f.23.6.1 (L:) Mitochon 10.7 1.1E+02 0.0081 19.9 3.2 32 203-238 7-38 (46)
8 d1yu5x1 a.14.1.1 (X:10-76) Vil 9.4 40 0.0029 23.7 0.6 16 261-276 43-58 (67)
9 d1qzpa_ a.14.1.1 (A:) Dematin 9.0 39 0.0028 23.8 0.4 15 261-275 44-58 (68)
10 d1ujsa_ a.14.1.1 (A:) Actin-bi 7.1 58 0.0042 24.0 0.6 18 261-278 58-75 (88)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=34.25 E-value=6.8 Score=32.69 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=61.9
Q ss_pred hccccccCccchhhHHHHHH-----------H-HHHHHHhhhhcc-cCCCCCCchhhhhhhhhhhhhhHHhhhhhhhhhc
Q 020539 74 RQSYWAYSRPIIVLDVLWNL-----------V-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRR 140 (325)
Q Consensus 74 r~s~wayS~pwi~lelvwnl-----------a-qIvaaivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rYr~r 140 (325)
|--||.-+-|.+.+++.+.+ . .++++++++..- -.|--..+-.- .+.|+++|++.+.++|.-|..-
T Consensus 72 RYiDW~lTtPlll~~l~l~~~~~~~~~~~~~~~li~~~~~Mi~~G~~g~~~~~~~~~-~~~f~~~~~~f~~i~y~l~~~~ 150 (226)
T d1xioa_ 72 RYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVR-YLWYICGVCAFLIILWGIWNPL 150 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHH-HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999987653 2 233444443332 23311112123 3478999999888887655432
Q ss_pred ccCCCccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeeec
Q 020539 141 RRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (325)
Q Consensus 141 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~~ 201 (325)
.+.... ......+-+...-.++.++|.+=+..|.+.
T Consensus 151 ~~~~~~-------------------------~~~~~~~~~~~l~~~~~v~W~~YPi~~~l~ 186 (226)
T d1xioa_ 151 RAKTRT-------------------------QSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (226)
T ss_dssp HHHHTT-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcc-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211100 013344455555667788999999999983
No 2
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=25.15 E-value=19 Score=30.28 Aligned_cols=101 Identities=16% Similarity=0.318 Sum_probs=63.7
Q ss_pred hccccccCccchhhHHHHH-------HH-HHHHHHhhhhcc-cCCCCCCchhhhhhhhhhhhhhHHhhhhhhhhhcccCC
Q 020539 74 RQSYWAYSRPIIVLDVLWN-------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (325)
Q Consensus 74 r~s~wayS~pwi~lelvwn-------la-qIvaaivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rYr~rn~~~ 144 (325)
|--||.=.-|.+.+|+... +. .++++++++..- -.|--..|..-| +.|+++|++.+.++|.-+..-.+..
T Consensus 88 RYiDW~lTtPLll~~l~ll~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~~-~~~~~~~~~~~~i~y~l~~~~~~~~ 166 (236)
T d1uaza_ 88 RYADWLFTTPLLLLDLALLAKVDRVSIGTLVGVDALMIVTGLVGALSHTPLARY-TWWLFSTICMIVVLYFLATSLRAAA 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHH-HHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999987643 22 233444444332 244333444333 5799999999998887665433211
Q ss_pred CccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeee
Q 020539 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (325)
Q Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~ 200 (325)
++ ....+.+-++..--++.++|.+=...|++
T Consensus 167 ~~-------------------------~~~~~~~~~~~l~~~~~v~W~iYPi~~~l 197 (236)
T d1uaza_ 167 KE-------------------------RGPEVASTFNTLTALVLVLWTAYPILWII 197 (236)
T ss_dssp TS-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 11334455666677788899999999988
No 3
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.92 E-value=9.5 Score=23.94 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.0
Q ss_pred CCCHHHhhcCCCccee
Q 020539 261 GATEEEIDRLPKFKFS 276 (325)
Q Consensus 261 GAS~e~I~~LP~yKFk 276 (325)
|-|.++..+||+||=.
T Consensus 11 gmsr~eF~~LP~WKq~ 26 (35)
T d1yu8x1 11 GMTRSAFANLPLWKQQ 26 (35)
T ss_dssp SSCHHHHHTSCHHHHH
T ss_pred CCCHHHHHHCcHhHHH
Confidence 7899999999999843
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.63 E-value=11 Score=23.77 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.5
Q ss_pred CCCHHHhhcCCCcce
Q 020539 261 GATEEEIDRLPKFKF 275 (325)
Q Consensus 261 GAS~e~I~~LP~yKF 275 (325)
|-|.++.++||+||=
T Consensus 12 gmsr~eF~~LP~WKq 26 (36)
T d1unda_ 12 GITRGQFAALPGWKQ 26 (36)
T ss_dssp SSCHHHHHHSCHHHH
T ss_pred CcCHHHHHHCcHHHH
Confidence 789999999999984
No 5
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=20.35 E-value=9 Score=32.45 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=61.5
Q ss_pred hccccccCccchhhHHHHH-------H-HHHHHHHhhhhcc-cCC-CCCCchhhhhhhhhhhhhhHHhhhhhhhhhcccC
Q 020539 74 RQSYWAYSRPIIVLDVLWN-------L-VFVIVAFAVLGVS-INE-KPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143 (325)
Q Consensus 74 r~s~wayS~pwi~lelvwn-------l-aqIvaaivVL~lS-k~E-~P~~PLr~WIvGYa~gCv~~l~lv~~rYr~rn~~ 143 (325)
|-.||.-+-|.+.+|+.+. + ..++++.+++..- -.| .+.....-| +.|+++|++.+.++|.-+......
T Consensus 85 RYiDW~lTtPLll~~l~l~~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~~w-~~~~i~~~~~~~i~y~l~~~~~~~ 163 (239)
T d1e12a_ 85 RYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRW-AFYAISCAFFVVVLSALVTDWAAS 163 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHH-HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHccCchhHHH-HHHHHHHHHHHHHHHHHhccchhh
Confidence 8889999999999998753 2 3344444444433 244 222222234 678999999999998877653321
Q ss_pred CCccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeeec
Q 020539 144 EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (325)
Q Consensus 144 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~~ 201 (325)
.++ + ..... ++..--++.++|.+=...|++.
T Consensus 164 ~~~------------------~------~~~~~---~~~l~~~~~v~W~iYPi~~~l~ 194 (239)
T d1e12a_ 164 ASS------------------A------GTAEI---FDTLRVLTVVLWLGYPIVWAVG 194 (239)
T ss_dssp HHH------------------H------TCHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhh------------------H------HHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 100 0 01222 3344455778899988899883
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=17.19 E-value=30 Score=28.85 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=62.2
Q ss_pred hccccccCccchhhHHHHHH-------HHHHHHHhhhhcc--cCCCCCCchhhhhhhhhhhhhhHHhhhhhhhhhcccCC
Q 020539 74 RQSYWAYSRPIIVLDVLWNL-------VFVIVAFAVLGVS--INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (325)
Q Consensus 74 r~s~wayS~pwi~lelvwnl-------aqIvaaivVL~lS--k~E~P~~PLr~WIvGYa~gCv~~l~lv~~rYr~rn~~~ 144 (325)
|-.||.=.-|.+.+|+.... ..++++-++..++ -.|--..+-.-| ++|+++|++.+.++|.-|..-....
T Consensus 78 RYiDWllTtPLll~~l~li~~~~~~~~~~li~a~~~Mi~~G~~g~~~~~~~~k~-~~~~is~~~f~~i~~~l~~~~~~~a 156 (227)
T d1m0ka_ 78 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFFGFTSKA 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999976532 2333333333322 123111111234 5799999999999888776532211
Q ss_pred CccccCCCCCCCCCCCCCcccccccCCcchHHHHHhHHHHHHHHHHHhhhheeeee
Q 020539 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (325)
Q Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~k~le~~lt~Ff~VWfVVGf~WV~ 200 (325)
. +....+.+.++..-.++.++|.+=...|.+
T Consensus 157 ~-------------------------~~~~~~~~~~~~l~~~~~v~W~iYPI~~~l 187 (227)
T d1m0ka_ 157 E-------------------------SMRPEVASTFKVLRNVTVVLWSAYPVVWLI 187 (227)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------------------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 011345566666777788999999999988
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.68 E-value=1.1e+02 Score=19.93 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=20.1
Q ss_pred CCcccCCCCchhhhhHHHhhhchhhhhhhHHhhHhh
Q 020539 203 GETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238 (325)
Q Consensus 203 g~ss~~dAP~LYwLCivFLAF~~~fvvicyalpcli 238 (325)
|..+.-.--+-|.|...|-+|= ..+.+.||+|
T Consensus 7 G~NLPFsv~Nk~rLla~m~~~f----Gsgfa~PF~i 38 (46)
T d1v54l_ 7 GKNIPFSVENKWRLLAMMTLFF----GSGFAAPFFI 38 (46)
T ss_dssp TTSSSSCCSSHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHH----hccccchHHH
Confidence 4555556667788876664433 3477777765
No 8
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.39 E-value=40 Score=23.68 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.2
Q ss_pred CCCHHHhhcCCCccee
Q 020539 261 GATEEEIDRLPKFKFS 276 (325)
Q Consensus 261 GAS~e~I~~LP~yKFk 276 (325)
|-|.++..+||+||=.
T Consensus 43 gms~~eF~~LP~WKq~ 58 (67)
T d1yu5x1 43 GMTRSAFANLPLWKQQ 58 (67)
T ss_dssp SSCHHHHHTSCHHHHH
T ss_pred CcCHHHHHHCcHHHHH
Confidence 7889999999998743
No 9
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=39 Score=23.82 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.4
Q ss_pred CCCHHHhhcCCCcce
Q 020539 261 GATEEEIDRLPKFKF 275 (325)
Q Consensus 261 GAS~e~I~~LP~yKF 275 (325)
|-|.++.++||+||=
T Consensus 44 gms~~eF~~Lp~WKq 58 (68)
T d1qzpa_ 44 AMSPEEFGKLALWKR 58 (68)
T ss_dssp SSCHHHHHHSCHHHH
T ss_pred CcCHHHHHHCcHHHH
Confidence 788888888888874
No 10
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.08 E-value=58 Score=24.01 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=14.8
Q ss_pred CCCHHHhhcCCCcceeec
Q 020539 261 GATEEEIDRLPKFKFSRI 278 (325)
Q Consensus 261 GAS~e~I~~LP~yKFk~~ 278 (325)
|-|.++..+||+||=...
T Consensus 58 gMsr~eF~~LP~WKq~~l 75 (88)
T d1ujsa_ 58 GMTISEFDRLALWKRNEL 75 (88)
T ss_dssp SSCHHHHTTSCHHHHHHH
T ss_pred CcCHHHHHHCcHHHHHHH
Confidence 789999999999985543
Done!