Query 020540
Match_columns 325
No_of_seqs 155 out of 1661
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:12:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02498 omega-3 fatty acid de 100.0 1.5E-65 3.1E-70 477.2 27.9 303 22-325 93-395 (450)
2 PLN02505 omega-6 fatty acid de 100.0 2.3E-60 5E-65 440.3 29.5 321 1-325 1-338 (381)
3 PLN02598 omega-6 fatty acid de 100.0 7.8E-54 1.7E-58 401.5 26.2 286 29-325 76-364 (421)
4 cd03507 Delta12-FADS-like The 100.0 1.4E-40 3.1E-45 290.3 18.3 220 47-316 1-222 (222)
5 cd03511 Rhizopine-oxygenase-li 100.0 4.1E-39 8.9E-44 292.5 23.1 259 43-325 8-271 (285)
6 COG3239 DesA Fatty acid desatu 100.0 4.2E-39 9.1E-44 297.4 19.0 272 30-325 15-294 (343)
7 PLN03198 delta6-acyl-lipid des 100.0 8.8E-38 1.9E-42 301.5 19.3 281 32-325 188-486 (526)
8 PLN03199 delta6-acyl-lipid des 100.0 3.3E-36 7.2E-41 290.1 21.8 289 32-325 113-442 (485)
9 cd03506 Delta6-FADS-like The D 100.0 1.3E-36 2.8E-41 262.9 12.0 192 82-325 3-197 (204)
10 cd03514 CrtR_beta-carotene-hyd 100.0 5.1E-35 1.1E-39 252.5 17.0 180 75-325 20-200 (207)
11 cd03508 Delta4-sphingolipid-FA 100.0 1.1E-33 2.5E-38 254.5 19.5 244 43-324 10-255 (289)
12 PLN02579 sphingolipid delta-4 100.0 1.9E-33 4.2E-38 256.0 20.0 268 11-323 4-282 (323)
13 cd03510 Rhizobitoxine-FADS-lik 100.0 4E-34 8.7E-39 240.4 13.9 169 60-323 2-175 (175)
14 cd03509 DesA_FADS-like Fatty a 100.0 5.6E-32 1.2E-36 244.1 20.6 219 82-325 30-255 (288)
15 cd03513 CrtW_beta-carotene-ket 100.0 8.8E-31 1.9E-35 227.1 19.1 187 80-319 33-224 (225)
16 PF00487 FA_desaturase: Fatty 100.0 1.2E-31 2.6E-36 237.8 13.1 238 76-325 3-244 (257)
17 KOG2987 Fatty acid desaturase 100.0 9.5E-29 2.1E-33 209.3 12.7 269 13-324 2-281 (324)
18 KOG4232 Delta 6-fatty acid des 100.0 6.5E-29 1.4E-33 225.8 11.4 276 32-325 100-391 (430)
19 cd03512 Alkane-hydroxylase Alk 99.9 3.3E-20 7.1E-25 169.6 17.9 216 75-321 68-285 (314)
20 cd01060 Membrane-FADS-like The 99.8 1.6E-18 3.5E-23 137.3 8.6 59 92-150 14-72 (122)
21 PF11960 DUF3474: Domain of un 98.9 1.9E-09 4.2E-14 83.8 4.7 54 14-67 82-135 (136)
22 COG1398 OLE1 Fatty-acid desatu 98.8 1.9E-07 4E-12 81.5 13.4 52 97-149 66-118 (289)
23 PLN02220 delta-9 acyl-lipid de 98.6 2.4E-06 5.2E-11 77.4 17.3 52 97-149 76-128 (299)
24 KOG1600 Fatty acid desaturase 97.8 0.00051 1.1E-08 61.6 12.2 49 100-149 91-139 (321)
25 cd03505 Delta9-FADS-like The D 97.7 0.00055 1.2E-08 57.4 11.4 48 101-149 28-75 (178)
26 PF08557 Lipid_DES: Sphingolip 94.9 0.012 2.6E-07 36.0 1.0 35 16-50 1-38 (39)
27 PF13829 DUF4191: Domain of un 69.1 19 0.00041 31.4 6.6 63 32-96 9-71 (224)
28 PLN02601 beta-carotene hydroxy 60.5 39 0.00085 30.2 6.9 82 43-139 176-259 (303)
29 COG1398 OLE1 Fatty-acid desatu 43.3 22 0.00048 31.9 2.7 43 95-144 207-249 (289)
30 cd03513 CrtW_beta-carotene-ket 42.3 2.3E+02 0.0051 24.7 9.9 11 133-143 206-216 (225)
31 cd03509 DesA_FADS-like Fatty a 34.4 3.2E+02 0.0069 24.8 9.0 14 131-144 229-242 (288)
32 TIGR03093 SASP_sspL small, aci 33.9 17 0.00037 21.6 0.4 16 5-20 2-17 (36)
33 PRK07424 bifunctional sterol d 33.8 2.4E+02 0.0053 27.0 8.5 24 131-159 37-60 (406)
34 PF06799 DUF1230: Protein of u 33.2 2.5E+02 0.0054 22.7 7.0 18 24-41 3-21 (144)
35 TIGR02230 ATPase_gene1 F0F1-AT 30.2 1.9E+02 0.0041 21.8 5.6 8 47-54 36-43 (100)
36 PLN03199 delta6-acyl-lipid des 26.7 1.2E+02 0.0026 29.8 5.2 13 300-312 215-227 (485)
37 KOG4232 Delta 6-fatty acid des 25.6 1.5E+02 0.0033 28.4 5.3 12 300-311 197-208 (430)
38 PLN02434 fatty acid hydroxylas 25.4 1.7E+02 0.0036 25.9 5.3 12 129-140 196-207 (237)
39 PF07095 IgaA: Intracellular g 25.0 1.6E+02 0.0035 30.0 5.6 36 28-63 180-217 (705)
40 PF11947 DUF3464: Protein of u 24.5 1.2E+02 0.0025 24.9 3.9 11 37-47 50-60 (153)
41 PF00487 FA_desaturase: Fatty 24.3 1.8E+02 0.004 24.5 5.5 12 132-143 219-230 (257)
42 PLN03198 delta6-acyl-lipid des 23.0 1.3E+02 0.0028 29.9 4.7 14 300-313 290-303 (526)
43 PF04298 Zn_peptidase_2: Putat 21.6 28 0.00061 30.3 -0.2 21 84-104 81-101 (222)
44 PLN02505 omega-6 fatty acid de 21.6 2.4E+02 0.0051 26.9 5.9 36 85-120 261-296 (381)
No 1
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=1.5e-65 Score=477.16 Aligned_cols=303 Identities=77% Similarity=1.424 Sum_probs=279.5
Q ss_pred CCCCCCCCCCCHHHHHHhcCcCccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 020540 22 SFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCG 101 (325)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~ 101 (325)
++++.++|+++++|+|+++|++||++|++|++.+++.|+++++++++++.+.++|++|+++++++|+++.++++++|||+
T Consensus 93 ~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~wpl~w~~~G~~~~gL~vl~HDcg 172 (450)
T PLN02498 93 EFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVVWPLYWFAQGTMFWALFVLGHDCG 172 (450)
T ss_pred ccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47888899999999999999999999999999999999999988877776777888999999999999999999999999
Q ss_pred CccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhhchhhhHHHH
Q 020540 102 HGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPA 181 (325)
Q Consensus 102 H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~p~ 181 (325)
|+++++++++|+++|.+++.++++|+..||.+|+.||++||+.++||++.|.++++|+.++...++++...++.++++|+
T Consensus 173 Hgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y~~l~~~~~~~~~~~~~~~~g~p~ 252 (450)
T PLN02498 173 HGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKSLDKVTRTLRFTLPFPMLAYPF 252 (450)
T ss_pred ccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776677776655566788999
Q ss_pred HHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhHhHHHHHHHHHHhhhhccCC
Q 020540 182 YLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHG 261 (325)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~~~~H~~ 261 (325)
|++.+..++.+++|+|.+++|.++++.+++.+.++++++.++++.+....|++.++.+|++|+++.++|+.++++++|++
T Consensus 253 YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv~~~WL~~iTyLhHt~ 332 (450)
T PLN02498 253 YLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHG 332 (450)
T ss_pred HHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 99988888888999999999999999999888888877777777777778999999999999999999999999999997
Q ss_pred CCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccCcchhhhcCCCCCcccHHHHHHHhcC
Q 020540 262 DDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
. |+++|+++++||++++++++|+||+++|++++++||++|+.||+||+||+|||+||++++|+
T Consensus 333 ~-~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I~tHV~HHlf~~IPhYhl~eAt~aiK~ 395 (450)
T PLN02498 333 H-EDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKP 395 (450)
T ss_pred C-CCCCCCCCCCCcchhhccceeecCcccchhhhhcCcccchhhhccCCCCCcCHHHHHHHHHH
Confidence 5 57899999999999999999999999999999999999999999999999999999999984
No 2
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=2.3e-60 Score=440.27 Aligned_cols=321 Identities=39% Similarity=0.730 Sum_probs=272.2
Q ss_pred CccccccccccCCCcccccCCCCCCCCCCCCCHHHHHHhcCcCccccCcchhHHHHHHHHHHHHHHHHHHH-hh---h--
Q 020540 1 MEKERKLKNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAAT-HF---N-- 74 (325)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-- 74 (325)
|.++|||.|-.+.++-|....+.++.++|+++++|+|+++|++||++|++|++.+++.|+++++++++++. +. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~ 80 (381)
T PLN02505 1 MGAGGRMSVPTSSKKGSASAVKRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGP 80 (381)
T ss_pred CCCCCcCCCCccccCccccccccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 77899999966666666666688888899999999999999999999999999999999999988776554 22 2
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcC
Q 020540 75 -TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPM 153 (325)
Q Consensus 75 -~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~ 153 (325)
.+++++++++++|+++.++++++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||++||+.++|+++.|.
T Consensus 81 ~~~~l~~~~~~~~G~~~~~l~vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~ 160 (381)
T PLN02505 81 LSYVAWPLYWAAQGCVLTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPK 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCc
Confidence 2445677789999999999999999999999999999999999999899999999999999999999999999998887
Q ss_pred cHHHhhhc-----CccchhHHhhhchhhhHHHHHHHhhCCCC----CCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 020540 154 PEKIYSKL-----DSSTRILRFSLPLPMLAYPAYLWYRSPGK----DGSHFNPYSSLFSPGERKAVVISTACWTFMFGLL 224 (325)
Q Consensus 154 ~~~~~~~~-----~~~~~~lr~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (325)
++++++.. .+..++.+. .....+|+|+|++.+..++ ..++|+|.++++.++++.++..+.++++++.+++
T Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~-~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l 239 (381)
T PLN02505 161 KKSALPWYSKYLNNPPGRLLHI-VVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGL 239 (381)
T ss_pred CHHHHhHHHHHhcChHHHHHHH-HHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76554321 111122211 1234567888887555442 3578999888899999999988888887777766
Q ss_pred HHHHHHhchhHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccC-cch
Q 020540 225 VYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIG-THV 303 (325)
Q Consensus 225 ~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~n-yH~ 303 (325)
+.+....|++.++.+|++|+++++.|+.+++++||+ +|++|+++++||++.+++++|+|++++|++++++||+ +|+
T Consensus 240 ~~~~~~~G~~~~l~~y~vP~lv~~~wlv~itylqHt---~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv 316 (381)
T PLN02505 240 YRLAAAKGLAWVLCVYGVPLLIVNAFLVLITYLQHT---HPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHV 316 (381)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccc
Confidence 666666799899999999999999999999999999 4689999999999999999999999999999999997 999
Q ss_pred hhhcCCCCCcccHHHHHHHhcC
Q 020540 304 IHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 304 eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
.||++|+||+||||||++.+|+
T Consensus 317 ~HHl~srIP~Y~l~eA~~aik~ 338 (381)
T PLN02505 317 AHHLFSTMPHYHAMEATKAIKP 338 (381)
T ss_pred hhhccCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999985
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=7.8e-54 Score=401.49 Aligned_cols=286 Identities=29% Similarity=0.544 Sum_probs=235.4
Q ss_pred CCCCHHHHHHhcCcCccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCC
Q 020540 29 PPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSES 108 (325)
Q Consensus 29 ~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~ 108 (325)
++++++|+++++|++||++|++|++.+++.++++++++++++ ...+|+.++++++++|+.+.++++++|||+|++++++
T Consensus 76 ~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~~-~~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~~~ 154 (421)
T PLN02598 76 DNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAAI-AVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFSKN 154 (421)
T ss_pred CCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 467999999999999999999999999999998875554433 3345777888889999999999999999999999999
Q ss_pred CchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhhchhhhHHHHHHHhhCC
Q 020540 109 PLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSP 188 (325)
Q Consensus 109 ~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~p~~~~~~~~ 188 (325)
+++|+++|.+++.++++|+..||..|+.||++||+.++|||+.+.++++|+..+.+.+++. ...+| |+|++.+..
T Consensus 155 ~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l~----~~~~G-P~yl~~~~~ 229 (421)
T PLN02598 155 QLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAMM----RAGMG-PLWWWASIG 229 (421)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHhhcCHHHHHHH----HHhHh-HHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999987654444321 12234 766654321
Q ss_pred CCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHHHhchhHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCC
Q 020540 189 GKDGSHFNPYSSLFSPGERKAVVISTACWTFMFG-LLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKL 267 (325)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~ 267 (325)
.....+|++. .++++++.++.++.++..++++ +++.+....|.+.++.+|++|+++.+.|++++++++|.. |++
T Consensus 230 ~~~~~hf~~~--~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~it~lhHt~---p~i 304 (421)
T PLN02598 230 HWLFWHFDLN--KFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHTA---PHI 304 (421)
T ss_pred cceeeccCcc--cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCC
Confidence 1123456543 3677788888777776654432 233344457888889999999999999999999999994 589
Q ss_pred CCccCCCcccccccee-eeeCCcc-hhhhHhcccCcchhhhcCCCCCcccHHHHHHHhcC
Q 020540 268 PWYRGKEWNYLRGGLT-TVDRDYG-IFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 268 p~~~~~~~~~~~~~~~-t~~~~~~-~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
|+++++||++.+++++ |++++++ |+++|++|+|||++||+||+||+||||++++.+|+
T Consensus 305 p~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~ 364 (421)
T PLN02598 305 PFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQE 364 (421)
T ss_pred CccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHH
Confidence 9988889999999886 8888875 77999999999999999999999999999999985
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=1.4e-40 Score=290.31 Aligned_cols=220 Identities=49% Similarity=0.960 Sum_probs=172.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCC
Q 020540 47 KNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVP 126 (325)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~ 126 (325)
++.++++.+++.|+++++++++++....+|++++++++++|+.+.++++++|||+|+++++++++|+++|.+++.+++.|
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p 80 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCC
Confidence 35678899999999998887766544567777888889999999999999999999999999999999999999999999
Q ss_pred hhhHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcch
Q 020540 127 YNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGE 206 (325)
Q Consensus 127 ~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (325)
+..||..|+.||+++|+.++|+|..|.++.++....... ++. .
T Consensus 81 ~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~~~~~~~---~y~-----------~----------------------- 123 (222)
T cd03507 81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRL---PYR-----------L----------------------- 123 (222)
T ss_pred hHHHHHHHHHHHhccCCCCCCCcccCcCHHHhhcccccc---hHH-----------H-----------------------
Confidence 999999999999999999999999887766554321110 000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCccccccce-eee
Q 020540 207 RKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGL-TTV 285 (325)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~~~~~~-~t~ 285 (325)
.++. +.+......++.+ .+ .+.+|++|+++.+.+++++++++|.. |++|+++++||++.+.|+ +|+
T Consensus 124 ~~~~----~~~~~~g~~~~~~---~~---~~~~~~ip~l~~~~~l~~~t~l~H~~---~~~~~~~~~~w~~~~~q~~~t~ 190 (222)
T cd03507 124 YRNP----FLMLSLGWPYYLL---LN---VLLYYLIPYLVVNAWLVLITYLQHTF---PDIPWYRADEWNFAQAGLLGTV 190 (222)
T ss_pred HHHH----HHHHHHHHHHHHH---HH---HHHHHHhHHHHHHHHHHeeeEecCCC---CCCCCcCccccchhhhcceeee
Confidence 0000 0000000000111 11 67789999999999999999999995 578888888999866665 577
Q ss_pred eCCc-chhhhHhcccCcchhhhcCCCCCcccH
Q 020540 286 DRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHL 316 (325)
Q Consensus 286 ~~~~-~~l~~l~~n~nyH~eHHlfP~iP~~~L 316 (325)
|+++ +|++++++|+|||+|||+||+||+|||
T Consensus 191 ~~~~~~~~~~l~~~i~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 191 DRDYGGWLNWLTHIIGTHVAHHLFPRIPHYNL 222 (222)
T ss_pred eccccHHHHHHhcCCCcccchhcCCCCCcCcC
Confidence 7776 478999999999999999999999986
No 5
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=4.1e-39 Score=292.46 Aligned_cols=259 Identities=19% Similarity=0.230 Sum_probs=177.7
Q ss_pred CccccCcchhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHh
Q 020540 43 HCWVKNPWRSLSYVLRDLLVVLALLAAAT-HFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHS 121 (325)
Q Consensus 43 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~ 121 (325)
++.++|+++++..++.++++++++.+++. ..++|. .+++.+++|..+.+++.++|||+|+++++++++|+++|.+++.
T Consensus 8 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~ 86 (285)
T cd03511 8 QLMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWW-ALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGL 86 (285)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHH
Confidence 36678999999999998888876655443 334443 4444578899999999999999999999999999999999999
Q ss_pred cccCChhhHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhhch-hhhH-HHHHH--HhhCCCCCCCccCC
Q 020540 122 SILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPL-PMLA-YPAYL--WYRSPGKDGSHFNP 197 (325)
Q Consensus 122 ~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~~~-~~~~-~p~~~--~~~~~~~~~~~~~~ 197 (325)
+++.|+..||..|+.||+++|++++|||.....+. .+.+++...... .+.. .+... .....+..
T Consensus 87 ~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~------~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~------ 154 (285)
T cd03511 87 MILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPP------TLREYLLALSGLPYWWGKLRTVFRHAFGAVSEA------ 154 (285)
T ss_pred HhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCch------HHHHHHHHHhChHHHHHHHHHHHHHHhcccccc------
Confidence 99999999999999999999999999997532111 111222111000 0000 11000 00111100
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCccc
Q 020540 198 YSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNY 277 (325)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~ 277 (325)
......+++++++..+...++++++++++++...|.+..+++|++|++++..++.+++++||.+++ ++ ++ +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~~~~~eH~~~~-~~-----~~--~- 225 (285)
T cd03511 155 EKPFIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRLFLLAEHGGCP-ED-----AN--D- 225 (285)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-cc-----cc--h-
Confidence 011122344555555555555555555555566687778889999999988888888899999752 11 11 1
Q ss_pred cccceeeeeCCcchhhhHhcccCcchhhhcCCCCCcccHHHHHHHhcC
Q 020540 278 LRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 278 ~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
.+++ +|+..+ +|.+++++|+|||+|||++|+||+|||||+++.+|+
T Consensus 226 ~~~t-rs~~~~-~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~ 271 (285)
T cd03511 226 LRNT-RTTLTN-PPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKD 271 (285)
T ss_pred hhhh-hhhhhh-HHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHH
Confidence 1222 232222 577999999999999999999999999999999984
No 6
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=4.2e-39 Score=297.41 Aligned_cols=272 Identities=26% Similarity=0.463 Sum_probs=179.7
Q ss_pred CCCHHHHHHhcCcCccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCC
Q 020540 30 PFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESP 109 (325)
Q Consensus 30 ~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~ 109 (325)
..+++.+++.+|+++++++..+....++....++++......++++|+.+++++++.|+.+.++++++|||+||+++|++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r 94 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNR 94 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Confidence 45688999999999888887777666665555555544444455568888888889999899999999999999999999
Q ss_pred chhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhh---chhhhHH-HHHHHh
Q 020540 110 LLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSL---PLPMLAY-PAYLWY 185 (325)
Q Consensus 110 ~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~---~~~~~~~-p~~~~~ 185 (325)
|+||++|.+++.+.+.|+..||..|++||++||+.|+|||.....+..- ....++++. ....++. +...+
T Consensus 95 ~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~~~~~~-----~~~~l~~~~i~~~~~~~~~~~~~~~- 168 (343)
T COG3239 95 WINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPETYVSYPEQL-----RRGPLRFQLIRLPWLAFGFGPRWAL- 168 (343)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHHHHhCchhh-----hhhhHHHHHHHHHHHHHhhhhhhhh-
Confidence 9999999999999889999999999999999999888866421111100 011111110 1111111 11110
Q ss_pred hCCCCCCCccCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHhchhHhHHHH-hHhHHHHHHHHHHhhhhccCCCC
Q 020540 186 RSPGKDGSHFNPYSSLFSPGERKAVVISTAC-WTFMFGLLVYLSFVFGPITMFKLY-GVPYLIFVMWLDFVTYLHHHGDD 263 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~~~l~~~-~lP~~~~~~~l~~~~~~~H~~~~ 263 (325)
.++......+.+.++......... .+++. +........+| ++|+++.+.+...+.+++|.-
T Consensus 169 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~l~~~~~~~p~l~~~~~~~~~~~~~h~~-- 231 (343)
T COG3239 169 -------LHFELLEKLFKRSGKAPKAAALATLLAAIG--------LAALLALAFFWGLIPLLLVGLWLVLVLFVHHTF-- 231 (343)
T ss_pred -------hhhhhhhhccCCcccchHHHHHHHHHHHHH--------HHHHHHHHHHHhHhHHHHHHHHHHHHHHhhccc--
Confidence 011111111111112222111111 11111 01112223344 688999999999999999984
Q ss_pred CCCCCCccCCCcccccccee-eeeCCc-chhhhHhcccCcchhhhcCCCCCcccHHHHHHHhcC
Q 020540 264 EHKLPWYRGKEWNYLRGGLT-TVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 264 ~~~~p~~~~~~~~~~~~~~~-t~~~~~-~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
+.+++....+|++...+.+ |++++. ++++++++|+|||+|||+||+||+||||++++.+|+
T Consensus 232 -~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~ 294 (343)
T COG3239 232 -DLLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKE 294 (343)
T ss_pred -ccccccccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHH
Confidence 2566655566655555553 334444 477999999999999999999999999999999985
No 7
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=8.8e-38 Score=301.46 Aligned_cols=281 Identities=17% Similarity=0.216 Sum_probs=182.0
Q ss_pred CHHHHHHhcC-cCccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCc
Q 020540 32 KIGEIRAAIP-KHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPL 110 (325)
Q Consensus 32 ~~~~~~~~~p-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~ 110 (325)
.++++++.+. +++|++++.+....++..++++++++++.+...+++..+++++++|+.+.++++++|||+|++++++++
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s~~~~~~ 267 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQVFETRW 267 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcH
Confidence 4779999874 579999998887777766666655554443333333345566788999999999999999999999999
Q ss_pred hhHHHHHHHHh-cccCChhhHhHhhhhhccCCCCCC-----CCCCcCcCcHHHhh-----hc--CccchhHHhhhchhhh
Q 020540 111 LNSFVGHILHS-SILVPYNGWRISHRTHHQNHGNVE-----HDESWVPMPEKIYS-----KL--DSSTRILRFSLPLPML 177 (325)
Q Consensus 111 ~N~~~g~l~~~-~~~~~~~~wr~~H~~HH~~~n~~~-----~Dpd~~~~~~~~~~-----~~--~~~~~~lr~~~~~~~~ 177 (325)
+|+++|.+++. +.|.|+.+||..|+.||.+||..+ .|||+...+...+. .. ..+.++.+++. .+
T Consensus 268 ~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~~~~~~~~yQh---~~ 344 (526)
T PLN03198 268 LNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENKTFLRILQYQH---LF 344 (526)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhhhHHHHHhhhh---HH
Confidence 99999999764 589999999999999999999887 79998654311111 00 01112223332 22
Q ss_pred HHHHHHHhhCCCCCCCccCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHH-HHHhchhHhHHHHhHhHHHHHHHHHHhh
Q 020540 178 AYPAYLWYRSPGKDGSHFNPYSSLFSPG-ERKAVVISTACWTFMFGLLVYL-SFVFGPITMFKLYGVPYLIFVMWLDFVT 255 (325)
Q Consensus 178 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~~~l~~~~lP~~~~~~~l~~~~ 255 (325)
.+|++.+.+.... +........++ ...+.....+..++.+++.+.+ +...+.+..++++++..++.+.++..++
T Consensus 345 f~~ll~l~~~~~~----~~s~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~~g~~l~~vF 420 (526)
T PLN03198 345 FMALLFFARGSWL----FWSWRYTSTAKLAPADRLLEKGTILFHYFWFIGTACYLLPGWKPLVWMAVTELMCGMLLGFVF 420 (526)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 2232211111000 00000000010 0111122222222333222222 2334555556677778888999999999
Q ss_pred hhccCCCCCCCCCCccCCCcccccccee-eeeCCc-chhhhHhcccCcchhhhcCCCCCcccHHHHHHHhcC
Q 020540 256 YLHHHGDDEHKLPWYRGKEWNYLRGGLT-TVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 256 ~~~H~~~~~~~~p~~~~~~~~~~~~~~~-t~~~~~-~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
+++|..+ +++. .++ ++.+.|+. |.|... .|++||+||+|||+||||||+||++|||++++++|+
T Consensus 421 ~lnH~~~---~v~~-~~~--dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~i~piVk~ 486 (526)
T PLN03198 421 VLSHNGM---EVYN-KSK--EFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNKIAPQVEA 486 (526)
T ss_pred hccccCC---CCCC-CCc--CHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHHHhHHHHH
Confidence 9999975 2332 222 56677764 445443 577999999999999999999999999999999985
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=290.05 Aligned_cols=289 Identities=16% Similarity=0.118 Sum_probs=183.7
Q ss_pred CHHHHHHhcC-cCccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCc
Q 020540 32 KIGEIRAAIP-KHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPL 110 (325)
Q Consensus 32 ~~~~~~~~~p-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~ 110 (325)
.++++++++. +++|++++......++..+++++++++++++.++++..+++++++|+.+.++++++||++|++++++++
T Consensus 113 ~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l~HDa~H~~~~~~~~ 192 (485)
T PLN03199 113 GYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRK 192 (485)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCch
Confidence 4779999996 479999988776666666666655555544455555566777899999999999999999999999999
Q ss_pred hhHHHHHHHH-hcccCChhhHhHhhhhhccCCCC-------CCCCCCcCcCc-----HH---Hhhhc---CccchhHHhh
Q 020540 111 LNSFVGHILH-SSILVPYNGWRISHRTHHQNHGN-------VEHDESWVPMP-----EK---IYSKL---DSSTRILRFS 171 (325)
Q Consensus 111 ~N~~~g~l~~-~~~~~~~~~wr~~H~~HH~~~n~-------~~~Dpd~~~~~-----~~---~~~~~---~~~~~~lr~~ 171 (325)
+|+++|.+++ .+.|.|..+|+..|+.||.+||. .+.|||+...+ +. .++.. .....+.++.
T Consensus 193 ~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (485)
T PLN03199 193 HGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKDSGFVKFA 272 (485)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccccchhhHH
Confidence 9999998876 45899999999999999999997 36899985221 11 11110 0111111111
Q ss_pred h-chhhhHHHHHHHhhC----------CCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-H--hchhHhH
Q 020540 172 L-PLPMLAYPAYLWYRS----------PGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSF-V--FGPITMF 237 (325)
Q Consensus 172 ~-~~~~~~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~g~~~~l 237 (325)
. .|.++.+|++.+.+. ..+.......... ..++.........++.++.+++.+.+.. . .+++..+
T Consensus 273 ~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~~~~~~l 351 (485)
T PLN03199 273 IKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALE-LEAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFAYSA 351 (485)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 1 122223333221110 0000000000000 1112222222333333333333332221 1 3344556
Q ss_pred HHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCcccccccee-eeeCCc------chhhhHhcccCcchhhhcCCC
Q 020540 238 KLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLT-TVDRDY------GIFNNIHHDIGTHVIHHLFPQ 310 (325)
Q Consensus 238 ~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~-t~~~~~------~~l~~l~~n~nyH~eHHlfP~ 310 (325)
.++++..++.+.++..++.++|.++ +++- +++..++.+.|+. |.|... .|++||+||+|||+||||||+
T Consensus 352 ~~~~~~~~~~g~~l~~~f~l~H~~~---~~~~-~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGLN~QIEHHLFP~ 427 (485)
T PLN03199 352 FYFFTATASCGFFLAIVFGLGHNGM---ATYD-ADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFPM 427 (485)
T ss_pred HHHHHHHHHHhhHheEEEecCCccc---cccC-CCCCccHHHHHHHhccCccCCCCCcchHHHHHhccchhhhhhhcCCC
Confidence 6778888888999999999999975 2221 2222255666764 555532 388999999999999999999
Q ss_pred CCcccHHHHHHHhcC
Q 020540 311 IPHYHLVEAVRSRSH 325 (325)
Q Consensus 311 iP~~~Lp~~~~~lk~ 325 (325)
||++|||++.+++||
T Consensus 428 mp~~~y~~i~piVk~ 442 (485)
T PLN03199 428 LPRHNIAKCHALVES 442 (485)
T ss_pred CchhhHHhhhHHHHH
Confidence 999999999999985
No 9
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=1.3e-36 Score=262.91 Aligned_cols=192 Identities=21% Similarity=0.251 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhc
Q 020540 82 YWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKL 161 (325)
Q Consensus 82 ~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~ 161 (325)
+++++|+.+.++++++|||+|+++++++++|+++|.+++.++|.|+.+||..|+.||++||+.++|||+.+.+...+...
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~ 82 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARSEP 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEeccc
Confidence 45678888889999999999999999999999999999999999999999999999999999999999864321111000
Q ss_pred CccchhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHh
Q 020540 162 DSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYG 241 (325)
Q Consensus 162 ~~~~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~ 241 (325)
.. . .++..++..... . .++..++.+. +.+|+
T Consensus 83 -----~~---------------~-----------------~~~~~~~~~~~q---~-~~~~~~~~~~--------~~~~~ 113 (204)
T cd03506 83 -----AF---------------G-----------------KDQKKRFLHRYQ---H-FYFFPLLALL--------LLAFL 113 (204)
T ss_pred -----cc---------------c-----------------cchHHHHHHHHH---H-HHHHHHHHHH--------HHHHH
Confidence 00 0 000001110000 0 0000000110 66789
Q ss_pred HhHHHHHHHHHHhhhhccCCCCCCCCCCc-cCCCcccccccee-eeeCCc-chhhhHhcccCcchhhhcCCCCCcccHHH
Q 020540 242 VPYLIFVMWLDFVTYLHHHGDDEHKLPWY-RGKEWNYLRGGLT-TVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVE 318 (325)
Q Consensus 242 lP~~~~~~~l~~~~~~~H~~~~~~~~p~~-~~~~~~~~~~~~~-t~~~~~-~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~ 318 (325)
+|.++.+.+++.+++++|... +++++ +++++++.+.|++ |+|... +|++|+++|+|||+|||+||+||+++||+
T Consensus 114 ~~~~~~~~~l~~~~~~~H~~~---~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~ 190 (204)
T cd03506 114 VVQLAGGLWLAVVFQLNHFGM---PVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPK 190 (204)
T ss_pred HHHHHHhhhhheEeecccccc---cccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHHH
Confidence 999999999999999999975 45543 4456788777774 556544 58899999999999999999999999999
Q ss_pred HHHHhcC
Q 020540 319 AVRSRSH 325 (325)
Q Consensus 319 ~~~~lk~ 325 (325)
+++++|+
T Consensus 191 ~~~~v~~ 197 (204)
T cd03506 191 VAPLVRE 197 (204)
T ss_pred HHHHHHH
Confidence 9999985
No 10
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=5.1e-35 Score=252.52 Aligned_cols=180 Identities=23% Similarity=0.365 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcCc
Q 020540 75 TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMP 154 (325)
Q Consensus 75 ~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~ 154 (325)
.|+..+++.++.|+.+.++++++|||+|++++++|++|+++|.+++.+.+.|+..||..|+.||+++|+.++|||..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~--- 96 (207)
T cd03514 20 SYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF--- 96 (207)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH---
Confidence 45555566677888889999999999999999999999999999998999999999999999999999988999963
Q ss_pred HHHhhhcCccchhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 020540 155 EKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPI 234 (325)
Q Consensus 155 ~~~~~~~~~~~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 234 (325)
+... .. .+ ..+++ ++.......+.+
T Consensus 97 ------------~~~~------------~~-----------------------~~-----~~~~~---~~~~~~~~~~~~ 121 (207)
T cd03514 97 ------------LLEW------------LV-----------------------AR-----SLFIT---LLVIAILFGFLW 121 (207)
T ss_pred ------------HHHH------------HH-----------------------HH-----HHHHH---HHHHHHHHHHHH
Confidence 0000 00 00 01100 111111223445
Q ss_pred HhHHHHhHhHHHHHHHHHH-hhhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccCcchhhhcCCCCCc
Q 020540 235 TMFKLYGVPYLIFVMWLDF-VTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPH 313 (325)
Q Consensus 235 ~~l~~~~lP~~~~~~~l~~-~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~ 313 (325)
..+++|++|.++.+.++++ .++.+|.+. + ++++|+..+ + ...++++++++|+|||.|||+||+||+
T Consensus 122 ~~~l~~~iP~l~~~~~l~~~~~~~~H~~~-~------~~~~~~~~~----~--~~~~l~~~l~~~~nyH~~HHL~P~IP~ 188 (207)
T cd03514 122 ELLNLWFLPALIVGTYLALFFDWLPHHPF-E------ETQRWDNSR----V--YPSKLLNPLIMGQNYHLVHHLWPSIPW 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeCccCC-C------Cccchhhhh----c--ccchhHheeecCCchhHHHhCCCCCch
Confidence 6788999999999999997 468899854 1 122333211 1 111466999999999999999999999
Q ss_pred ccHHHHHHHhcC
Q 020540 314 YHLVEAVRSRSH 325 (325)
Q Consensus 314 ~~Lp~~~~~lk~ 325 (325)
|||||+++++|+
T Consensus 189 y~Lp~a~~~~~~ 200 (207)
T cd03514 189 YRYPEAYYANKP 200 (207)
T ss_pred hhhHHHHHHhHH
Confidence 999999999874
No 11
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=1.1e-33 Score=254.50 Aligned_cols=244 Identities=20% Similarity=0.219 Sum_probs=147.4
Q ss_pred CccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHh
Q 020540 43 HCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFW-PLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHS 121 (325)
Q Consensus 43 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~ 121 (325)
++|++|+...+..++.+++.++++.++ ...+|+.. ++++++.|+.+.+++.++|||+|++++|++++|+++|.+++.
T Consensus 10 ~L~~~~~~~~~~~~~~v~~~~~~~~~l--~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~~~ 87 (289)
T cd03508 10 KLFGPDPLTKWVVLGVVLLQIITAYLL--RDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFANL 87 (289)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHHHH
Confidence 688899988877777666666554332 23355444 445566777778999999999999999999999999999999
Q ss_pred cccCChh-hHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCC
Q 020540 122 SILVPYN-GWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSS 200 (325)
Q Consensus 122 ~~~~~~~-~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (325)
++|.|+. .||..|+.||+++|+.+.|||+.+..+..+.+.. ..+. .....++++...|.... +
T Consensus 88 ~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~~~l~~~~-~g~~------~~~~~~~~~~~~rp~~~---~------ 151 (289)
T cd03508 88 PIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFEGKLFSTV-LGKA------IWVTLQPFFYALRPLFV---R------ 151 (289)
T ss_pred HhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHHHHHHhCc-hHHH------HHHHHHHHHHHhccccc---C------
Confidence 9999998 6999999999999998899998753222111110 0000 00011233322221110 0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCcccccc
Q 020540 201 LFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRG 280 (325)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~~~~ 280 (325)
.++..+. .+.+.+..+++.+ +++...|++.++ |+++.++.+..+ | |.++....|+|+....
T Consensus 152 -~~~~~~~-~~~n~~~~~~~~~---~l~~~~G~~~~l--yll~~~~~~~~~-------~-----p~~g~~i~Eh~~~~~~ 212 (289)
T cd03508 152 -PKPPTRL-EVINIVVQITFDY---LIYYFFGWKSLA--YLLLGSFLGGGL-------H-----PLAGHFISEHYVFTGK 212 (289)
T ss_pred -CCcchhH-HHHHHHHHHHHHH---HHHHHhCcHHHH--HHHHHHHHHHhh-------c-----cccccccccccccccc
Confidence 0111122 2233333233322 233456765433 454554443321 0 0111112222322211
Q ss_pred ceeeeeCCcchhhhHhcccCcchhhhcCCCCCcccHHHHHHHhc
Q 020540 281 GLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRS 324 (325)
Q Consensus 281 ~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk 324 (325)
...|.+. ++++|++++|+|||.|||++|+||+|+||++++..+
T Consensus 213 ~~~t~S~-y~~~~~~~~n~~yH~~HH~~p~iP~~~Lp~~~~~~~ 255 (289)
T cd03508 213 GQETYSY-YGPLNLLTFNVGYHNEHHDFPYIPGTRLPKLRKIAP 255 (289)
T ss_pred CcCCccc-hHHHHHHhhccChHHHhcCCCCCCcccHHHHHHHCH
Confidence 1112211 378999999999999999999999999999999865
No 12
>PLN02579 sphingolipid delta-4 desaturase
Probab=100.00 E-value=1.9e-33 Score=256.00 Aligned_cols=268 Identities=20% Similarity=0.199 Sum_probs=161.8
Q ss_pred cCCCcccccCCCCCCCCCCCC-CHHHHHHhcCc--CccccCcchhHHHHHHHHHHHHHHHHHHH--hhhhHHHHHH-HHH
Q 020540 11 VNANGVVEKGDSFDPAAPPPF-KIGEIRAAIPK--HCWVKNPWRSLSYVLRDLLVVLALLAAAT--HFNTWFFWPL-YWV 84 (325)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~l-~~v 84 (325)
+..+.++++|+.|...|++.- +++++.++.|+ +++.+|+.-.+..++...+.+ ++++ ...+|+..++ +++
T Consensus 4 ~~~~~~~~~~f~w~~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v~~~~----~~~~l~~~~~w~~~l~~a~~ 79 (323)
T PLN02579 4 EEEEGVMATDFFWSYTDEPHASRRREILSKYPQIKELFGPDPWAFPKIAAVVLLQL----CTATLLHDAGWPKILLVAYF 79 (323)
T ss_pred hhcccCCccceeECCchhhHHHHHHHHHHhchHhhcccCCCchHHHHHHHHHHHHH----HHHHHHccCCHHHHHHHHHH
Confidence 334567889999999999965 45577688885 577777664433322222222 2222 2346765555 456
Q ss_pred HHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCChh-hHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCc
Q 020540 85 AQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYN-GWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDS 163 (325)
Q Consensus 85 l~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~-~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~ 163 (325)
+.|+..+++++++|||+|+++|+++++|+++|.++++++|.|+. +||..|+.||+++|+.+.|||+.+..+ ++-.
T Consensus 80 ~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~~E--~~l~-- 155 (323)
T PLN02579 80 FGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQGE--ARLV-- 155 (323)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCchhh--HHHH--
Confidence 67777788899999999999999999999999999989999998 799999999999999889999754322 2110
Q ss_pred cchhHHhhhchhh-hHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhH
Q 020540 164 STRILRFSLPLPM-LAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGV 242 (325)
Q Consensus 164 ~~~~lr~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~l 242 (325)
+..+. .+.+ +..+++...| +.. .. ..+..++.+ ++.++.+++ .++++...|+..++ +.++
T Consensus 156 -~~~~~---~~~~~~~~~~f~~~r-p~~----~~-----~~~~~~~~~-in~~~~~~~---~~~l~~~~G~~~ll-yl~~ 216 (323)
T PLN02579 156 -RNTLS---KIVWVFLQLFFYALR-PLF----VN-----PKPPGLWEF-INLLTQIAF---DAALVYFAGWKSLA-YLIL 216 (323)
T ss_pred -HHHHH---HHHHHHHHHHHHHhh-HHh----hc-----cCCchHHHH-HHHHHHHHH---HHHHHHHHCHHHHH-HHHH
Confidence 11111 0111 1223332222 110 00 011222222 333332222 22344455765543 2233
Q ss_pred hHHHHHHHHHH---hhhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccCcchhhhcCCCCCcccHHHH
Q 020540 243 PYLIFVMWLDF---VTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEA 319 (325)
Q Consensus 243 P~~~~~~~l~~---~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~ 319 (325)
|.++ +..+.- ....||... .+.+. |.+. ++++||+++|+|||.|||+||+||+|+||++
T Consensus 217 ~~~~-~~~lhp~~g~~~~ehy~~---------------~~~~e-tysy-yg~ln~l~~NigYH~eHH~fP~IP~~~Lp~l 278 (323)
T PLN02579 217 STFL-GGGLHPMAGHFISEHYVF---------------NPGQE-TYSY-YGPLNLLTWNVGYHNEHHDFPRIPGSKLHKV 278 (323)
T ss_pred HHHH-hcccccccceeeccceec---------------cCCCC-ceee-hhHHHHHhhcccccHhhcCCCCCchhhHHHH
Confidence 3322 211111 112345432 11111 2212 3889999999999999999999999999999
Q ss_pred HHHh
Q 020540 320 VRSR 323 (325)
Q Consensus 320 ~~~l 323 (325)
++..
T Consensus 279 ~~~~ 282 (323)
T PLN02579 279 KEIA 282 (323)
T ss_pred HHhC
Confidence 9864
No 13
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=100.00 E-value=4e-34 Score=240.42 Aligned_cols=169 Identities=30% Similarity=0.439 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHH-HhcccCChhhHhHhhhhhc
Q 020540 60 LLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHIL-HSSILVPYNGWRISHRTHH 138 (325)
Q Consensus 60 ~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~-~~~~~~~~~~wr~~H~~HH 138 (325)
+++|+++++++...++|++++++++++|.++.++++++|||+|++++|++++|+++|.++ +.+++.|+..||..|+.||
T Consensus 2 w~~i~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH 81 (175)
T cd03510 2 WLVIAAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHH 81 (175)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHh
Confidence 556666666666778888888888999999999999999999999999999999999865 5789999999999999999
Q ss_pred cCCCCCCCCCCcCcCcHHHhhhcCccchhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHH
Q 020540 139 QNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWT 218 (325)
Q Consensus 139 ~~~n~~~~Dpd~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (325)
+++|+ ++|||..
T Consensus 82 ~~~~~-~~Dpd~~------------------------------------------------------------------- 93 (175)
T cd03510 82 RHLGT-EDDPDLA------------------------------------------------------------------- 93 (175)
T ss_pred CccCC-CCCCcHH-------------------------------------------------------------------
Confidence 99996 8999841
Q ss_pred HHHHHHHHHHHHhchhHhHHHHhHhHHHHHHHHHHh-hhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhh-hHh
Q 020540 219 FMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFV-TYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFN-NIH 296 (325)
Q Consensus 219 ~~~~~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~-~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~-~l~ 296 (325)
.++++|++|.++.+..+..+ ...||.+.++ +.+ . + .+. .+|+. .+|++ +|.
T Consensus 94 ----------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~-~~~---~---~-~~~-tr~~~--~~~~~r~l~ 146 (175)
T cd03510 94 ----------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPA-DED---P---D-ARN-TRTTF--GGWIERLLF 146 (175)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCc---c---h-hhc-Ccccc--ccHHHHHHH
Confidence 23556788888887766654 5789997621 110 0 0 111 22332 25554 665
Q ss_pred --cccCcchhhhcCCCCCcccHHHHHHHh
Q 020540 297 --HDIGTHVIHHLFPQIPHYHLVEAVRSR 323 (325)
Q Consensus 297 --~n~nyH~eHHlfP~iP~~~Lp~~~~~l 323 (325)
.|+|||.|||++|+||+|||||+|+.+
T Consensus 147 ~p~~~~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 147 APHNINYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred cccCCcHHHHHhCCcCCchhhHHHHHHhC
Confidence 599999999999999999999999875
No 14
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=100.00 E-value=5.6e-32 Score=244.07 Aligned_cols=219 Identities=21% Similarity=0.262 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCC--CCCCCCCcCcCcHHHhh
Q 020540 82 YWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHG--NVEHDESWVPMPEKIYS 159 (325)
Q Consensus 82 ~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n--~~~~Dpd~~~~~~~~~~ 159 (325)
+.+++|......++++|||+|++++|++++|+++|.++ ..++.|+..||.+|+.||++|| +.++|||....++.+++
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~ 108 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWA 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHHh
Confidence 44556666666789999999999999999999999885 3456899999999999999999 44589999877888888
Q ss_pred hcCccchhHH-h-hhchhhhH-HHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHH-HHHHHHHHHhchhH
Q 020540 160 KLDSSTRILR-F-SLPLPMLA-YPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMF-GLLVYLSFVFGPIT 235 (325)
Q Consensus 160 ~~~~~~~~lr-~-~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~ 235 (325)
+.+.+++.+. . ......+. .|.+.+.... +. +. ..+.++++..+... +..++.. +.+..+....|+ .
T Consensus 109 ~~~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~-~~-----~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~ 179 (288)
T cd03509 109 RLPRWQRALLRANNTLLGRLILGPPLGLIAFA-RD-----EF-RALRAGDRAALRAW-LLHAALLAPLLAWLQLSAGI-P 179 (288)
T ss_pred hCcHHHHHHHHHhhcchhHHhhhhHHHHHHHH-HH-----HH-HHhccccHHHHHHH-HHHHHHHHHHHHHHHHHhhH-H
Confidence 7766555432 1 22222111 1221111000 00 00 11122232222111 1111111 111112212222 2
Q ss_pred hHHHHhHhHHHHHHHHH-HhhhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccCcchhhhcCCCCCcc
Q 020540 236 MFKLYGVPYLIFVMWLD-FVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHY 314 (325)
Q Consensus 236 ~l~~~~lP~~~~~~~l~-~~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~~ 314 (325)
.++|++|....+..+. ..++.||.+. + .+ ... ..+++.+ ++++++++|+|||.|||++|+||+|
T Consensus 180 -~~~~~l~~~~la~~~~~~~~~~Eh~~~--~-~~---------~~r-s~~~~~~-~~~~~l~~ninyH~~HH~~P~vP~y 244 (288)
T cd03509 180 -WWAYLLAVYYPALSLAKIRTFLEHRAH--E-RP---------RGR-TVINEAG-GPLRLLFLNNNLHVVHHDLPTLPWY 244 (288)
T ss_pred -HHHHHHHHHHHHHHHHhhchHhhccCC--C-Cc---------cCC-ceeeeCc-HHHHHHHhcCCchHhhcCCCCCCcc
Confidence 3334455555554444 4568888853 1 11 011 1122332 4679999999999999999999999
Q ss_pred cHHHHHHHhcC
Q 020540 315 HLVEAVRSRSH 325 (325)
Q Consensus 315 ~Lp~~~~~lk~ 325 (325)
+|||+++++|+
T Consensus 245 ~Lp~~h~~~~~ 255 (288)
T cd03509 245 DLPRLYRARRD 255 (288)
T ss_pred cHHHHHHHhHH
Confidence 99999999874
No 15
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.97 E-value=8.8e-31 Score=227.14 Aligned_cols=187 Identities=19% Similarity=0.272 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCcccc-CCCchhHHHHHHHH-hcccCChhhHhHhhhhhccCCCCCCCCCCcCcCcHHH
Q 020540 80 PLYWVAQGTMFWAIFVLGHDCGHGSFS-ESPLLNSFVGHILH-SSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKI 157 (325)
Q Consensus 80 ~l~~vl~g~~~~~l~~l~Hd~~H~~~~-~~~~~N~~~g~l~~-~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~ 157 (325)
++++++.|+.+.++++++|||+|++++ +++++|+++|.+++ ++.+.|+..||..|..||+++|+. +|||+.+.++.
T Consensus 33 ~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~~~- 110 (225)
T cd03513 33 AAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGNPS- 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCCCC-
Confidence 345567888889999999999999999 79999999999985 568999999999999999999976 99998754321
Q ss_pred hhhcCccchhHH-hhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHh
Q 020540 158 YSKLDSSTRILR-FSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITM 236 (325)
Q Consensus 158 ~~~~~~~~~~lr-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 236 (325)
+.++ |. .++ +..+ ...+. +...+.+..+ ......+....
T Consensus 111 --------~~~~wy~---------~f~--~~y~----------------~~~ql----i~l~ivw~~~-l~~~~~~~~~~ 150 (225)
T cd03513 111 --------GFLPWYL---------HFM--SNYF----------------GWRQL----AILAAVWLLL-LGLGSAPLANL 150 (225)
T ss_pred --------ChHHHHH---------HHH--HhHh----------------HHHHH----HHHHHHHHHH-HHHHcccHHHH
Confidence 1111 10 000 0000 01121 1111111111 11111245568
Q ss_pred HHHHhHhHHHHHHHHHHh-hhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhH-hcccCcchhhhcCCCCCcc
Q 020540 237 FKLYGVPYLIFVMWLDFV-TYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNI-HHDIGTHVIHHLFPQIPHY 314 (325)
Q Consensus 237 l~~~~lP~~~~~~~l~~~-~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l-~~n~nyH~eHHlfP~iP~~ 314 (325)
+.+|++|.++++++++++ +++.|... +.|..+. + +.+|++. .+|++++ |.++|||.|||+||+||||
T Consensus 151 ~~~~~~P~l~~~~~l~~f~T~lpH~~~---~~~~~~~------~-~a~~~~~-~~~~~~l~c~~fgyH~eHH~fP~~Pw~ 219 (225)
T cd03513 151 LLFWALPLILSSLQLFYFGTWLPHRPG---RGGFADR------H-RARSSRL-SPVLSFLTCYHFGYHHEHHLSPSTPWW 219 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCCc------c-cceecCc-cHHHHHHHHHhcCcchhhccCCCCCcc
Confidence 899999999999999988 79999743 3343211 1 1123322 2688986 5889999999999999999
Q ss_pred cHHHH
Q 020540 315 HLVEA 319 (325)
Q Consensus 315 ~Lp~~ 319 (325)
|||++
T Consensus 220 ~Lp~~ 224 (225)
T cd03513 220 RLPEL 224 (225)
T ss_pred cCccc
Confidence 99987
No 16
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=1.2e-31 Score=237.82 Aligned_cols=238 Identities=27% Similarity=0.417 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCcCcCcH
Q 020540 76 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPE 155 (325)
Q Consensus 76 w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~~ 155 (325)
|+..++++++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||+++|+.++|||......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 44455666788888899999999999999999999999999999999999999999999999999999888999864311
Q ss_pred HHhhhcCccchhHHhhhchh--hhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhch
Q 020540 156 KIYSKLDSSTRILRFSLPLP--MLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGP 233 (325)
Q Consensus 156 ~~~~~~~~~~~~lr~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 233 (325)
..++.........+...... .+....+...... . ..........+...... ...++.+..+.+.+...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (257)
T PF00487_consen 83 PPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFR--K-----RRMRRRRKRPRRYLILA-ALLLALLLALLAALFFFSP 154 (257)
T ss_pred hhhhhhhhhhhhhhccccccccccccchhhhhhcc--c-----cccccccccchhHHHHH-HHhhhhhhhhhhhhccccc
Confidence 11111100000001000000 0000000000000 0 00000000000111112 2222222222222333445
Q ss_pred hHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCcccccccee-eeeCC-cchhhhHhcccCcchhhhcCCCC
Q 020540 234 ITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLT-TVDRD-YGIFNNIHHDIGTHVIHHLFPQI 311 (325)
Q Consensus 234 ~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~-t~~~~-~~~l~~l~~n~nyH~eHHlfP~i 311 (325)
...++++++|.++...++..+++++|.+.+ + .+ .++..+....++. +.+.. ..+++++++|+|||+|||+||+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~v 230 (257)
T PF00487_consen 155 WWALLLFLLPFLIGSFFLAFVTYLEHYGLD-P-DD--NEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPGV 230 (257)
T ss_pred ccchhHHHHHHhHHHHHHHHhhHHhhhccc-c-cc--cccccceecccccccccccCchhhhccccCCCChHHhCCCCCc
Confidence 567888899999999999998999999752 1 11 1112223333332 22222 25789999999999999999999
Q ss_pred CcccHHHHHHHhcC
Q 020540 312 PHYHLVEAVRSRSH 325 (325)
Q Consensus 312 P~~~Lp~~~~~lk~ 325 (325)
|+++|||+++.+|+
T Consensus 231 p~~~l~~~~~~~~~ 244 (257)
T PF00487_consen 231 PWYNLPEAHPILKE 244 (257)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999985
No 17
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.96 E-value=9.5e-29 Score=209.29 Aligned_cols=269 Identities=20% Similarity=0.206 Sum_probs=168.4
Q ss_pred CCcccccCCCCCCCCCCCC-CHHHHHHhcCc--CccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHH
Q 020540 13 ANGVVEKGDSFDPAAPPPF-KIGEIRAAIPK--HCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPL--YWVAQG 87 (325)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l--~~vl~g 87 (325)
.|+++|+|++|+..|+|+. |++|+.++.|+ .+|+++|+..+.-++..++-+.+++.+ .-..|. |++ +-++-|
T Consensus 2 g~~~sr~dF~W~yTeePHasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~~ll--~dl~W~-~il~~AYf~gg 78 (324)
T KOG2987|consen 2 GQSVSRTDFEWVYTEEPHASRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAAYLL--RDLDWK-WILFIAYFFGG 78 (324)
T ss_pred CCCccccceeEEecCCcchhHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHHHHH--hcccHH-HHHHHHHHhhh
Confidence 4789999999999999999 57799999995 799999988776665555555444322 223453 333 224566
Q ss_pred HHHHHHHhhhhcccCccccCC--CchhHHHHHHHHhcccCChh-hHhHhhhhhccCCCCCCCCCCcCcCcHHHhhhcCcc
Q 020540 88 TMFWAIFVLGHDCGHGSFSES--PLLNSFVGHILHSSILVPYN-GWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSS 164 (325)
Q Consensus 88 ~~~~~l~~l~Hd~~H~~~~~~--~~~N~~~g~l~~~~~~~~~~-~wr~~H~~HH~~~n~~~~Dpd~~~~~~~~~~~~~~~ 164 (325)
++.+.+..-.||.+|+..|++ +..|+++|.++.+|+|.|++ +.|..|..||++.+..+.|.|..+..+...-. ...
T Consensus 79 ~iNhsl~LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea~~f~-t~~ 157 (324)
T KOG2987|consen 79 FINHSLTLAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEAWLFD-TAF 157 (324)
T ss_pred hhchhHHHHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhheehhh-hhh
Confidence 667889999999999999988 78999999999999999997 89999999999999888999986544332211 112
Q ss_pred chhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhHhH
Q 020540 165 TRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 244 (325)
Q Consensus 165 ~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~lP~ 244 (325)
.+++. ...| |++.-.|-.. ..| ++-.+.++ ++.+..+.+-. .++..+|+.. +.+.+...
T Consensus 158 ~K~iw-~~lQ-----pfFY~fRPl~-----i~p-----kp~t~me~-iN~iiQ~~fd~---li~~f~G~ks-l~Yll~~s 216 (324)
T KOG2987|consen 158 GKLIW-VTLQ-----PFFYAFRPLF-----IYP-----KPPTDMEF-INTIIQLSFDL---LIVYFFGWKS-LAYLLASS 216 (324)
T ss_pred HHHHH-HHHH-----HHHHhhhhhe-----ecC-----CCchHHHH-HHHHHHHHHHH---HHHHHHhHHH-HHHHHHHH
Confidence 22221 1111 2221111100 000 11123333 23333332221 2333456543 22222222
Q ss_pred HHHHHHHHH---hhhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccCcchhhhcCCCCCcccHHHHHH
Q 020540 245 LIFVMWLDF---VTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVR 321 (325)
Q Consensus 245 ~~~~~~l~~---~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~ 321 (325)
++++ -+-- -+..||+.. .+++- |.+. ||.+|+++.|.+||+|||-||.||..+||++.+
T Consensus 217 ~lg~-gLHP~aGHFisEHY~f---------------~k~~E-TySY-YGplN~~tfNvGYH~EHHDFP~Ipg~~Lp~Vr~ 278 (324)
T KOG2987|consen 217 FLGM-GLHPIAGHFISEHYMF---------------KKGQE-TYSY-YGPLNLLTFNVGYHVEHHDFPYIPGSRLPKVRE 278 (324)
T ss_pred HHcC-CCCcccchhhHhhhhh---------------cCCcc-ceee-ecceeeEEEecccccccccCCCCCccccHHHHH
Confidence 2211 1100 122344422 22222 3322 488999999999999999999999999999988
Q ss_pred Hhc
Q 020540 322 SRS 324 (325)
Q Consensus 322 ~lk 324 (325)
+-.
T Consensus 279 iAp 281 (324)
T KOG2987|consen 279 IAP 281 (324)
T ss_pred hhH
Confidence 644
No 18
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-29 Score=225.80 Aligned_cols=276 Identities=15% Similarity=0.129 Sum_probs=154.4
Q ss_pred CHHHHHHhcCc-CccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCccccCCCc
Q 020540 32 KIGEIRAAIPK-HCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPL 110 (325)
Q Consensus 32 ~~~~~~~~~p~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l~Hd~~H~~~~~~~~ 110 (325)
+.+++|+++++ +++..++...+...+.+++..++.+.+. +...+++++++|..+++.++++||.||.+.+|+++
T Consensus 100 ~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i-----~~~~l~~a~Ll~~a~~Qs~~l~Hd~gH~~i~~~~~ 174 (430)
T KOG4232|consen 100 SFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLI-----YLLSLISAVLLGLAWAQSGWLQHDYGHLSIFKNSK 174 (430)
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 47788888876 6777776665554444444433322222 11256677899999999999999999999999999
Q ss_pred hhHHHHHHHHh-cccCChhhHhHhhhhhccCCCCCCCCCCcCcCc---HHHhhh--cCccch-hH--Hhhhc-hhhhHHH
Q 020540 111 LNSFVGHILHS-SILVPYNGWRISHRTHHQNHGNVEHDESWVPMP---EKIYSK--LDSSTR-IL--RFSLP-LPMLAYP 180 (325)
Q Consensus 111 ~N~~~g~l~~~-~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~~~~~---~~~~~~--~~~~~~-~l--r~~~~-~~~~~~p 180 (325)
+|+++..+.+. +.|.|-.+|+..|+.||.++|..++|||+...+ ....+. .++.++ .. ..+.. +...+.|
T Consensus 175 wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh~yf~~~~~p 254 (430)
T KOG4232|consen 175 WNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQHLYFFLIGPP 254 (430)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccceEEEEeccch
Confidence 99999998876 589999999999999999999999999975322 111110 011111 10 11110 0001111
Q ss_pred HHHH--hhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHhHhHHHHHHHHHHhh-hh
Q 020540 181 AYLW--YRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVT-YL 257 (325)
Q Consensus 181 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~l~~~~lP~~~~~~~l~~~~-~~ 257 (325)
.+.. .+........ +. ....+..+.......++.....+..+.++. .+..|.+- +..+.+...++ ..
T Consensus 255 ~l~~~~~~~~~~~~~~-~~--~~w~Dl~~~~~~~~~~~i~~~~~~~~~~~~------~L~~w~~r-~~~~~~s~~v~l~~ 324 (430)
T KOG4232|consen 255 FLRLMWFQQSIIFVQT-NL--LLWYDLYWPDRFYLRAFIYLHWGWGLLLLS------CLPNWPIR-FLFSSWSFWVTLTM 324 (430)
T ss_pred HHHHHHHHHHHHHHHh-HH--HHHHHhhhhhhHHHhhHHHhcchhhhHHHH------hccCchHH-HHHHHHHHHHHHhh
Confidence 1110 0000000000 00 000000010000011111111111111100 01112211 22334444444 77
Q ss_pred ccCCCCCCCCCCccCCCccccccce-eeeeCCc-chhhhHhcccCcchhhhcCCCCCcccHHHHHHHhcC
Q 020540 258 HHHGDDEHKLPWYRGKEWNYLRGGL-TTVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVEAVRSRSH 325 (325)
Q Consensus 258 ~H~~~~~~~~p~~~~~~~~~~~~~~-~t~~~~~-~~l~~l~~n~nyH~eHHlfP~iP~~~Lp~~~~~lk~ 325 (325)
+|+.. ++..+.+..-||...|+ +|+|+.. .|.+||.+++|+|+||||||+||++||+++.+.+||
T Consensus 325 nH~~~---~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL~~v~P~Vke 391 (430)
T KOG4232|consen 325 NHIDP---EIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNLNKVAPLVKE 391 (430)
T ss_pred hccch---hhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccchHHHHHHHHH
Confidence 88853 44432221134444454 3666655 588999999999999999999999999999999985
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.85 E-value=3.3e-20 Score=169.64 Aligned_cols=216 Identities=19% Similarity=0.173 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhh-hhccCCCCCCCCCCcCc
Q 020540 75 TWFFWPLYWVAQGTMFWAIF-VLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHR-THHQNHGNVEHDESWVP 152 (325)
Q Consensus 75 ~w~~~~l~~vl~g~~~~~l~-~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~-~HH~~~n~~~~Dpd~~~ 152 (325)
+|+..+.+.+.+|+...+++ ..+||++| |++++|+++|.++..+. ++..|+..|+ .||++++ +++|||...
T Consensus 68 ~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~-tp~DP~tar 140 (314)
T cd03512 68 SALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVA-TPEDPATAR 140 (314)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCC-CCCCccccc
Confidence 45555555566777665453 77888888 67999999999987655 4455899998 5999999 579999754
Q ss_pred CcHHHhhhcCccchhHHhhhchhhhHHHHHHHhhCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020540 153 MPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFG 232 (325)
Q Consensus 153 ~~~~~~~~~~~~~~~lr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 232 (325)
..+..|+-. .|.......-++-... .+.. +.+. +. ..-+.+++... +.+++++++++..+
T Consensus 141 ~ge~~y~f~------~r~~~g~~~~aw~~e~-~rl~-~~g~---~~-----~~~~n~~l~~~----~~~~a~~~~~~~~~ 200 (314)
T cd03512 141 RGESFYRFL------PRALVGSFRSAWKLEK-KRLR-RKGR---SP-----WSPRNEVLRYL----ALAVALLALAAALG 200 (314)
T ss_pred cCccHHHHH------HHHHHHHHHHHHHHHH-HHHH-hcCC---CC-----CccchHHHHHH----HHHHHHHHHHHHHH
Confidence 333333211 1110000000010000 0100 0000 00 00112222222 22333344444455
Q ss_pred hhHhHHHHhHhHHHHHHHHHHhhhhccCCCCCCCCCCccCCCccccccceeeeeCCcchhhhHhcccCcchhhhcCCCCC
Q 020540 233 PITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIP 312 (325)
Q Consensus 233 ~~~~l~~~~lP~~~~~~~l~~~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~l~~l~~n~nyH~eHHlfP~iP 312 (325)
.+..+.++++|.+++...+..++++||+|+.....+ ++ .++..+.+ -|.|.+....|++..|+++|.+||.+|++|
T Consensus 201 g~~~l~~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~--~g-r~e~~~~~-hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~ 276 (314)
T cd03512 201 GLAGLLFLLIQAFYAKSLLELVNYIEHYGLLRKKLA--NG-RYEPVGPR-HSWNSNHIVSNLLLFNLQRHSDHHAHPTRP 276 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC--CC-ccccCCCc-cCcCcCcHHHHHHHHhcchhhhhccCCCCc
Confidence 566778889999988888889999999997311111 11 11111111 123333246689999999999999999999
Q ss_pred cccHHHHHH
Q 020540 313 HYHLVEAVR 321 (325)
Q Consensus 313 ~~~Lp~~~~ 321 (325)
++.|+...+
T Consensus 277 y~~L~~~~~ 285 (314)
T cd03512 277 YQALRPFPE 285 (314)
T ss_pred hhhccCCcc
Confidence 999987654
No 20
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.76 E-value=1.6e-18 Score=137.30 Aligned_cols=59 Identities=36% Similarity=0.553 Sum_probs=55.6
Q ss_pred HHHhhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCCc
Q 020540 92 AIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESW 150 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd~ 150 (325)
++..++|||+|+++++++++|++++.+++.+.+.|+..|+..|+.||+++++.++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 77799999999999999999999999999999999999999999999999987789974
No 21
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=98.89 E-value=1.9e-09 Score=83.83 Aligned_cols=54 Identities=57% Similarity=1.160 Sum_probs=48.8
Q ss_pred CcccccCCCCCCCCCCCCCHHHHHHhcCcCccccCcchhHHHHHHHHHHHHHHH
Q 020540 14 NGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALL 67 (325)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~ 67 (325)
+..+.++.+||+.++||++++|+|+++|++||++|++|++.|+++|+++++++.
T Consensus 82 ~~~~~~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 82 SNKEEEEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred ccccccccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 445566788999999999999999999999999999999999999999987653
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.77 E-value=1.9e-07 Score=81.47 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=41.2
Q ss_pred hhcc-cCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCC
Q 020540 97 GHDC-GHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (325)
Q Consensus 97 ~Hd~-~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd 149 (325)
-|-| +|+++.-.+++..++.....+-...|.-.|-..|.+||+++ +++.||-
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~t-DTd~DPh 118 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKT-DTDQDPH 118 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhccc-CCCCCCC
Confidence 5654 68888888888887766655557788889999999999999 4788883
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.64 E-value=2.4e-06 Score=77.36 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=38.1
Q ss_pred hhc-ccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCC
Q 020540 97 GHD-CGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (325)
Q Consensus 97 ~Hd-~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd 149 (325)
.|= .+|+++-.++++..++..+.+.....+.-.|-..|..||+++. +++||=
T Consensus 76 yHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sD-t~~DPH 128 (299)
T PLN02220 76 YHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTD-SDRDPH 128 (299)
T ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCcc
Confidence 443 4788887777777766555544455667799999999999987 567873
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.76 E-value=0.00051 Score=61.60 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=36.9
Q ss_pred ccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCC
Q 020540 100 CGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (325)
Q Consensus 100 ~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd 149 (325)
-+|.++.-++++.-++........-.+.-.|-..|..||++|. +++||-
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~td-TD~DPh 139 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTD-TDADPH 139 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhccccc-cCCCCC
Confidence 5788888778887777666554443444488999999999998 688984
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.73 E-value=0.00055 Score=57.39 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=38.7
Q ss_pred cCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCCCCCCC
Q 020540 101 GHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (325)
Q Consensus 101 ~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~~~Dpd 149 (325)
+|+++..++.+..++..+..+....|...|...|..||+++. +++||-
T Consensus 28 aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sD-t~~DPh 75 (178)
T cd03505 28 AHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSD-TDGDPH 75 (178)
T ss_pred hhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccC-CCCCCC
Confidence 688888888888877766655566788899999999999987 567873
No 26
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=94.90 E-value=0.012 Score=35.95 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=29.9
Q ss_pred ccccCCCCCCCCCCCC-CHHHHHHhcCc--CccccCcc
Q 020540 16 VVEKGDSFDPAAPPPF-KIGEIRAAIPK--HCWVKNPW 50 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~--~~f~~~~~ 50 (325)
|+++|+.|+..++|+. +++++.++.|+ .++.+++.
T Consensus 1 v~~~DF~W~~~~ePH~~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 1 VSRNDFEWVYTDEPHASRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred CCccccEEeCCCCccHHHHHHHHHhChHHHHHhCCCCC
Confidence 6899999999999987 57799999995 68888764
No 27
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=69.08 E-value=19 Score=31.36 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=35.1
Q ss_pred CHHHHHHhcCcCccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 020540 32 KIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVL 96 (325)
Q Consensus 32 ~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~~l 96 (325)
+++++.+...- .-+.|++-.++.++..++.+++...+.+.+++|+.+++..++.|+.. ++.++
T Consensus 9 ~~~Qi~q~y~~-trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~-am~vl 71 (224)
T PF13829_consen 9 RRKQIWQAYKM-TRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLA-AMIVL 71 (224)
T ss_pred HHHHHHHHHHH-HHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH-HHHHH
Confidence 46677766631 12346666665555555555555555555667777766666666543 44433
No 28
>PLN02601 beta-carotene hydroxylase
Probab=60.52 E-value=39 Score=30.22 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=40.2
Q ss_pred CccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhcc-cCccccCCCchhHHHHHHHH
Q 020540 43 HCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIF-VLGHDC-GHGSFSESPLLNSFVGHILH 120 (325)
Q Consensus 43 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~vl~g~~~~~l~-~l~Hd~-~H~~~~~~~~~N~~~g~l~~ 120 (325)
+-|+.|+...+......++++ +.......++.+.+.++-+|+...|+. .+.||. .|..+-..+..|. +++
T Consensus 176 g~FE~NDlFaVifAvpAIaL~----~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~--~Y~-- 247 (303)
T PLN02601 176 GAFELNDVFAIVNAVPAIGLL----YYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANV--PYL-- 247 (303)
T ss_pred CCcccccchhhhhHHHHHHHH----HHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCC--HHH--
Confidence 457788777655443333222 111221122112223344566555554 889995 5665532222222 111
Q ss_pred hcccCChhhHhHhhhhhcc
Q 020540 121 SSILVPYNGWRISHRTHHQ 139 (325)
Q Consensus 121 ~~~~~~~~~wr~~H~~HH~ 139 (325)
..-+.-|..||+
T Consensus 248 -------rrl~~AHklHHa 259 (303)
T PLN02601 248 -------RKVAAAHQLHHT 259 (303)
T ss_pred -------HHHHHHHHhhcc
Confidence 233578999998
No 29
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=43.30 E-value=22 Score=31.86 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=24.7
Q ss_pred hhhhcccCccccCCCchhHHHHHHHHhcccCChhhHhHhhhhhccCCCCC
Q 020540 95 VLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNV 144 (325)
Q Consensus 95 ~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~wr~~H~~HH~~~n~~ 144 (325)
+++|-.|=.++..+....+.. ..++++ +. .-.||.||.++|+.
T Consensus 207 sl~H~~Gyr~fd~~d~arN~w--w~al~t---~G--EgwHNnHHafp~~a 249 (289)
T COG1398 207 SLGHYIGYRPFDCRDTARNCW--WVALVT---FG--EGWHNNHHAFPNSA 249 (289)
T ss_pred hhhhhhcccccCCCCCcccee--EEEEee---cc--cccccccccCcchh
Confidence 667877777776554322211 112221 11 34699999999953
No 30
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=42.31 E-value=2.3e+02 Score=24.67 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=9.5
Q ss_pred hhhhhccCCCC
Q 020540 133 SHRTHHQNHGN 143 (325)
Q Consensus 133 ~H~~HH~~~n~ 143 (325)
.|+.||.++..
T Consensus 206 yH~eHH~fP~~ 216 (225)
T cd03513 206 YHHEHHLSPST 216 (225)
T ss_pred cchhhccCCCC
Confidence 69999999875
No 31
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=34.40 E-value=3.2e+02 Score=24.77 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=10.7
Q ss_pred hHhhhhhccCCCCC
Q 020540 131 RISHRTHHQNHGNV 144 (325)
Q Consensus 131 r~~H~~HH~~~n~~ 144 (325)
...|..||.++..+
T Consensus 229 inyH~~HH~~P~vP 242 (288)
T cd03509 229 NNLHVVHHDLPTLP 242 (288)
T ss_pred CCchHhhcCCCCCC
Confidence 35699999988753
No 32
>TIGR03093 SASP_sspL small, acid-soluble spore protein L. subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspL.
Probab=33.95 E-value=17 Score=21.59 Aligned_cols=16 Identities=31% Similarity=0.435 Sum_probs=13.1
Q ss_pred cccccccCCCcccccC
Q 020540 5 RKLKNEVNANGVVEKG 20 (325)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (325)
|+..++||||+-.++.
T Consensus 2 G~~~~gVnPQG~~~d~ 17 (36)
T TIGR03093 2 GRLTGGVNPQGDSEDN 17 (36)
T ss_pred CccCCCcCCCcccccc
Confidence 6788999999988663
No 33
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=33.81 E-value=2.4e+02 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=15.4
Q ss_pred hHhhhhhccCCCCCCCCCCcCcCcHHHhh
Q 020540 131 RISHRTHHQNHGNVEHDESWVPMPEKIYS 159 (325)
Q Consensus 131 r~~H~~HH~~~n~~~~Dpd~~~~~~~~~~ 159 (325)
...|+.||++-+ +|..+.+++.|+
T Consensus 37 ~~~h~~hh~~~~-----~~~~~~~~~~~~ 60 (406)
T PRK07424 37 YRLHNWHHRVFR-----PDLSVVSEEIYR 60 (406)
T ss_pred HHHHHhHHhhcC-----CcCCcccHHHHh
Confidence 457999999854 555544555554
No 34
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=33.17 E-value=2.5e+02 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=13.9
Q ss_pred CCCCCCCC-CHHHHHHhcC
Q 020540 24 DPAAPPPF-KIGEIRAAIP 41 (325)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~p 41 (325)
+|.|+.|+ ++.+++++..
T Consensus 3 VP~eQqP~nEy~~L~~S~~ 21 (144)
T PF06799_consen 3 VPPEQQPLNEYQELKESWF 21 (144)
T ss_pred cCccccCHHHHHHHhhCcC
Confidence 57788888 6888887765
No 35
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.16 E-value=1.9e+02 Score=21.83 Aligned_cols=8 Identities=25% Similarity=0.850 Sum_probs=3.7
Q ss_pred cCcchhHH
Q 020540 47 KNPWRSLS 54 (325)
Q Consensus 47 ~~~~~~~~ 54 (325)
++.++.+.
T Consensus 36 ~~~~~~l~ 43 (100)
T TIGR02230 36 RSIWEGLG 43 (100)
T ss_pred CcHHHHHH
Confidence 34455443
No 36
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=26.65 E-value=1.2e+02 Score=29.79 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=10.9
Q ss_pred CcchhhhcCCCCC
Q 020540 300 GTHVIHHLFPQIP 312 (325)
Q Consensus 300 nyH~eHHlfP~iP 312 (325)
+.|..||.+|++.
T Consensus 215 ~~Hn~HH~~tN~~ 227 (485)
T PLN03199 215 NKHNGHHAVPNLH 227 (485)
T ss_pred HHHhhhhcCcCcC
Confidence 5788999999973
No 37
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=25.64 E-value=1.5e+02 Score=28.42 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=10.5
Q ss_pred CcchhhhcCCCC
Q 020540 300 GTHVIHHLFPQI 311 (325)
Q Consensus 300 nyH~eHHlfP~i 311 (325)
.-|.+||..|.+
T Consensus 197 ~~H~~HHa~pN~ 208 (430)
T KOG4232|consen 197 SHHNQHHAAPNS 208 (430)
T ss_pred HHHhhhhccCcc
Confidence 589999999986
No 38
>PLN02434 fatty acid hydroxylase
Probab=25.43 E-value=1.7e+02 Score=25.88 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=8.9
Q ss_pred hHhHhhhhhccC
Q 020540 129 GWRISHRTHHQN 140 (325)
Q Consensus 129 ~wr~~H~~HH~~ 140 (325)
.-|..|..||-.
T Consensus 196 ~lkr~H~~HHfk 207 (237)
T PLN02434 196 NLKKYHLNHHFR 207 (237)
T ss_pred HHHHHHHHHcCC
Confidence 447789999964
No 39
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=24.99 E-value=1.6e+02 Score=30.01 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHhcCcC--ccccCcchhHHHHHHHHHHH
Q 020540 28 PPPFKIGEIRAAIPKH--CWVKNPWRSLSYVLRDLLVV 63 (325)
Q Consensus 28 ~~~~~~~~~~~~~p~~--~f~~~~~~~~~~~~~~~~~~ 63 (325)
.+..++..+|++-+++ +-+++..+....++..+++.
T Consensus 180 ~e~veLl~iRkET~EE~aL~r~~G~~ea~~i~~afll~ 217 (705)
T PF07095_consen 180 SEQVELLNIRKETPEEHALHRSSGLREAFLICLAFLLL 217 (705)
T ss_pred CceeeeeeecccCHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 3345677888888875 45666666554444444443
No 40
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=24.49 E-value=1.2e+02 Score=24.85 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=5.6
Q ss_pred HHhcCcCcccc
Q 020540 37 RAAIPKHCWVK 47 (325)
Q Consensus 37 ~~~~p~~~f~~ 47 (325)
...||+...++
T Consensus 50 ~~~IP~~Vs~R 60 (153)
T PF11947_consen 50 DSAIPEVVSNR 60 (153)
T ss_pred ccccCHHHHHH
Confidence 34556655443
No 41
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=24.33 E-value=1.8e+02 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=9.4
Q ss_pred HhhhhhccCCCC
Q 020540 132 ISHRTHHQNHGN 143 (325)
Q Consensus 132 ~~H~~HH~~~n~ 143 (325)
..|+.||.++..
T Consensus 219 ~~H~~HHl~P~v 230 (257)
T PF00487_consen 219 NYHIEHHLFPGV 230 (257)
T ss_pred CChHHhCCCCCc
Confidence 369999988763
No 42
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=22.97 E-value=1.3e+02 Score=29.93 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=11.3
Q ss_pred CcchhhhcCCCCCc
Q 020540 300 GTHVIHHLFPQIPH 313 (325)
Q Consensus 300 nyH~eHHlfP~iP~ 313 (325)
+-|..||.+|++.-
T Consensus 290 ~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 290 EKHNLHHAAPNECD 303 (526)
T ss_pred HHHHHhccCCCCCC
Confidence 56889999998764
No 43
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=21.61 E-value=28 Score=30.26 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhcccCcc
Q 020540 84 VAQGTMFWAIFVLGHDCGHGS 104 (325)
Q Consensus 84 vl~g~~~~~l~~l~Hd~~H~~ 104 (325)
+..|....++++-+|||||--
T Consensus 81 vy~~~SiaAvaVAAHEvGHAi 101 (222)
T PF04298_consen 81 VYNGRSIAAVAVAAHEVGHAI 101 (222)
T ss_pred cCCCCCHHHHHHHHHHHhHHH
Confidence 345666677778899999953
No 44
>PLN02505 omega-6 fatty acid desaturase
Probab=21.61 E-value=2.4e+02 Score=26.87 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhcccCccccCCCchhHHHHHHHH
Q 020540 85 AQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILH 120 (325)
Q Consensus 85 l~g~~~~~l~~l~Hd~~H~~~~~~~~~N~~~g~l~~ 120 (325)
+.+..+..+..++|..-.-...+...||-.-|.+.+
T Consensus 261 v~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 261 IVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 334444555688998888888888888888877754
Done!