Query 020540
Match_columns 325
No_of_seqs 155 out of 1661
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8r_B Protein kinase BYR2; si 18.2 40 0.0014 24.0 1.0 41 7-47 59-99 (110)
2 3cqb_A Probable protease HTPX 9.6 55 0.0019 23.6 -0.4 13 92-104 83-95 (107)
3 2q14_A Phosphohydrolase; BT420 6.9 1.6E+02 0.0054 27.0 1.4 16 92-107 90-105 (410)
4 3b4r_A Putative zinc metallopr 6.7 2.6E+02 0.0089 23.0 2.5 13 94-106 50-62 (224)
5 3ixz_B Potassium-transporting 6.6 4.8E+02 0.016 22.5 4.3 9 215-223 42-50 (290)
6 3irh_A HD domain protein; phos 6.3 1.8E+02 0.0061 27.3 1.4 15 92-106 128-142 (480)
7 3sgr_A Tandem repeat of amyloi 6.3 80 0.0027 15.9 -0.6 8 2-9 11-18 (25)
8 3bg2_A DGTP triphosphohydrolas 5.7 2E+02 0.007 26.6 1.4 17 92-108 110-126 (444)
9 3u1n_A SAM domain and HD domai 5.6 2.3E+02 0.0079 26.8 1.7 15 92-106 102-116 (528)
10 3fyb_A Protein of unknown func 5.4 2.4E+02 0.0081 20.2 1.3 14 122-135 71-84 (104)
No 1
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=18.19 E-value=40 Score=23.97 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=23.4
Q ss_pred cccccCCCcccccCCCCCCCCCCCCCHHHHHHhcCcCcccc
Q 020540 7 LKNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVK 47 (325)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~f~~ 47 (325)
.+.+-++++-+|+++-..+.++|-.+++|+|++..-+.-++
T Consensus 59 ~~icr~~srPEReRLIl~~K~~p~psfEdlrrSweIe~aQ~ 99 (110)
T 1k8r_B 59 KQICFNSSSPERDRLIIVPKEKPCPSFEDLRRSWEIELAQP 99 (110)
T ss_dssp -----------CCCEEEEESSSCCCCHHHHHHTTCCC----
T ss_pred HHHHhCCCCcchheeEEecCCCCCCCHHHHHHHHHHHhhCc
Confidence 45677889999999999999999779999999887665554
No 2
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=9.58 E-value=55 Score=23.60 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=9.9
Q ss_pred HHHhhhhcccCcc
Q 020540 92 AIFVLGHDCGHGS 104 (325)
Q Consensus 92 ~l~~l~Hd~~H~~ 104 (325)
-.++++||.+|..
T Consensus 83 l~aVlaHElgH~~ 95 (107)
T 3cqb_A 83 AEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3348899999965
No 3
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=6.93 E-value=1.6e+02 Score=26.98 Aligned_cols=16 Identities=50% Similarity=0.796 Sum_probs=12.3
Q ss_pred HHHhhhhcccCccccC
Q 020540 92 AIFVLGHDCGHGSFSE 107 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~~ 107 (325)
.+..+.||.||+.++.
T Consensus 90 ~~AaLlHDiGh~PfsH 105 (410)
T 2q14_A 90 QAAILLHDIGHGPFSH 105 (410)
T ss_dssp HHHHHHTTTTCCTTHH
T ss_pred HHHHHHhccCCCcccc
Confidence 4556799999988753
No 4
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=6.69 E-value=2.6e+02 Score=23.01 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=9.9
Q ss_pred HhhhhcccCcccc
Q 020540 94 FVLGHDCGHGSFS 106 (325)
Q Consensus 94 ~~l~Hd~~H~~~~ 106 (325)
..+.||.+|.-..
T Consensus 50 ~v~~HElgH~~~A 62 (224)
T 3b4r_A 50 SVVLHELGHSYVA 62 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3678999997653
No 5
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=6.61 E-value=4.8e+02 Score=22.49 Aligned_cols=9 Identities=0% Similarity=0.198 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 020540 215 ACWTFMFGL 223 (325)
Q Consensus 215 ~~~~~~~~~ 223 (325)
+++++||++
T Consensus 42 lFYliFY~~ 50 (290)
T 3ixz_B 42 LYYVAFYVV 50 (290)
T ss_pred HHHHHHHHH
Confidence 344444433
No 6
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=6.31 E-value=1.8e+02 Score=27.27 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=11.8
Q ss_pred HHHhhhhcccCcccc
Q 020540 92 AIFVLGHDCGHGSFS 106 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~ 106 (325)
.+..+.||.||+.++
T Consensus 128 ~~AaLlHDIGH~PFs 142 (480)
T 3irh_A 128 LCAALLHDVGHGPYS 142 (480)
T ss_dssp HHHHHHTTTTCCTTH
T ss_pred HHHHHHhccCCCCcc
Confidence 445789999999864
No 7
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=6.25 E-value=80 Score=15.88 Aligned_cols=8 Identities=50% Similarity=0.347 Sum_probs=5.1
Q ss_pred cccccccc
Q 020540 2 EKERKLKN 9 (325)
Q Consensus 2 ~~~~~~~~ 9 (325)
|-|||+|+
T Consensus 11 evggklkv 18 (25)
T 3sgr_A 11 EVGGKLKV 18 (26)
T ss_dssp EETTEEEE
T ss_pred eeCcEEEE
Confidence 55677665
No 8
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=5.68 E-value=2e+02 Score=26.57 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=13.3
Q ss_pred HHHhhhhcccCccccCC
Q 020540 92 AIFVLGHDCGHGSFSES 108 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~~~ 108 (325)
.+..++||.||+.|+-.
T Consensus 110 ~~a~L~HDiGH~PFgH~ 126 (444)
T 3bg2_A 110 AAAALAHDIGNPPFGHS 126 (444)
T ss_dssp HHHHHHTTTTCCTTHHH
T ss_pred HHHHHhcccCCCCcccc
Confidence 44578999999998644
No 9
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=5.56 E-value=2.3e+02 Score=26.85 Aligned_cols=15 Identities=60% Similarity=0.849 Sum_probs=12.0
Q ss_pred HHHhhhhcccCcccc
Q 020540 92 AIFVLGHDCGHGSFS 106 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~ 106 (325)
.+..+.||.||+.++
T Consensus 102 ~~AaLlHDiGH~PFs 116 (528)
T 3u1n_A 102 QIAGLCHDLGHGPFS 116 (528)
T ss_dssp HHHHHHTTTTCBTTB
T ss_pred HHHHHHhccCCCCcc
Confidence 344789999999975
No 10
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=5.41 E-value=2.4e+02 Score=20.20 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=11.6
Q ss_pred cccCChhhHhHhhh
Q 020540 122 SILVPYNGWRISHR 135 (325)
Q Consensus 122 ~~~~~~~~wr~~H~ 135 (325)
.-|+||.-|+..|-
T Consensus 71 vYGMpy~eWKa~~Q 84 (104)
T 3fyb_A 71 VYGMPFAEWKTLYQ 84 (104)
T ss_dssp HHSSCHHHHHHHHC
T ss_pred HhCCCHHHHHHHHC
Confidence 34899999999875
Done!