Query 020540
Match_columns 325
No_of_seqs 155 out of 1661
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 04:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k8rb_ d.15.1.5 (B:) Protein 26.1 8.7 0.00063 25.8 0.6 34 7-40 59-92 (95)
2 d2o6ia1 a.211.1.1 (A:1-453) Hy 13.8 29 0.0021 30.1 1.4 16 92-107 104-119 (453)
3 d2heka1 a.211.1.1 (A:1-369) Hy 13.8 33 0.0024 28.2 1.7 17 92-108 78-94 (369)
4 d2htja1 a.4.5.73 (A:1-73) P fi 9.7 33 0.0024 21.0 0.2 18 1-18 38-55 (73)
5 d1h8ba_ a.39.1.7 (A:) alpha-Ac 9.2 56 0.0041 20.5 1.2 19 25-43 18-36 (73)
6 d1wf9a1 d.15.1.1 (A:8-101) NPL 7.4 31 0.0022 22.9 -0.7 31 17-47 7-37 (94)
7 d1twfl_ g.41.9.2 (L:) RBP12 su 7.2 77 0.0056 17.9 1.1 14 97-110 24-37 (46)
8 d1kqfb2 f.23.22.1 (B:246-290) 5.7 90 0.0066 17.5 0.8 13 10-22 33-45 (45)
9 d1kcfa1 a.140.2.1 (A:3-38) Mit 5.4 2E+02 0.014 14.4 2.0 29 95-123 6-34 (36)
10 d1my6a1 a.2.11.1 (A:1-88) Fe s 5.2 1.1E+02 0.0077 19.6 1.1 18 122-139 16-33 (88)
No 1
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=26.13 E-value=8.7 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=20.3
Q ss_pred cccccCCCcccccCCCCCCCCCCCCCHHHHHHhc
Q 020540 7 LKNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAI 40 (325)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (325)
++.--+|+|.||.++.+.+.+++..+.+|++++-
T Consensus 59 vtIC~~~~R~ER~RLIL~~k~~~~P~~~el~rs~ 92 (95)
T d1k8rb_ 59 KQICFNSSSPERDRLIIVPKEKPCPSFEDLRRSW 92 (95)
T ss_dssp -----------CCCEEEEESSSCCCCHHHHHHTT
T ss_pred HHHHhCCCccccCceEEEeCCCCCCCHHHHHHhh
Confidence 3455689999999999999988877899998764
No 2
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]}
Probab=13.82 E-value=29 Score=30.10 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=12.4
Q ss_pred HHHhhhhcccCccccC
Q 020540 92 AIFVLGHDCGHGSFSE 107 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~~ 107 (325)
.+..+.||.||++++-
T Consensus 104 ~~AaLlHDiGHgPfSH 119 (453)
T d2o6ia1 104 LCAALLHDVGHGPYSH 119 (453)
T ss_dssp HHHHHHTTTTCCTTHH
T ss_pred HHHHHHhccCcccccc
Confidence 3446799999999863
No 3
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]}
Probab=13.76 E-value=33 Score=28.23 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=13.3
Q ss_pred HHHhhhhcccCccccCC
Q 020540 92 AIFVLGHDCGHGSFSES 108 (325)
Q Consensus 92 ~l~~l~Hd~~H~~~~~~ 108 (325)
.+..+.||.||++++-.
T Consensus 78 ~~A~LlHDiGh~PFsH~ 94 (369)
T d2heka1 78 KLAGLLHDLGHPPFSHT 94 (369)
T ss_dssp HHHHHTTTTTCCSSSSC
T ss_pred HHHHHHhhcccchhhhh
Confidence 44568999999999754
No 4
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=9.67 E-value=33 Score=20.99 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=13.2
Q ss_pred CccccccccccCCCcccc
Q 020540 1 MEKERKLKNEVNANGVVE 18 (325)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (325)
+||||+.|-||--.+.++
T Consensus 38 Lekegki~RsPlRrGa~T 55 (73)
T d2htja1 38 LEKAGMVQRSPLRRGMAT 55 (73)
T ss_dssp HHHHTSEEEECCSSSSSC
T ss_pred HHHhcCcccChhhhhhHH
Confidence 378899888887666543
No 5
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=56 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.0
Q ss_pred CCCCCCCCHHHHHHhcCcC
Q 020540 25 PAAPPPFKIGEIRAAIPKH 43 (325)
Q Consensus 25 ~~~~~~~~~~~~~~~~p~~ 43 (325)
-.+||+++-.+|++.++++
T Consensus 18 A~~KpyVT~~dL~~~L~pe 36 (73)
T d1h8ba_ 18 ASDKPYILAEELRRELPPD 36 (73)
T ss_dssp TTSCSSBCHHHHHHHSCHH
T ss_pred hCCCCeeCHHHHHhhcCHH
Confidence 3568888989999988764
No 6
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.38 E-value=31 Score=22.86 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=19.5
Q ss_pred cccCCCCCCCCCCCCCHHHHHHhcCcCcccc
Q 020540 17 VEKGDSFDPAAPPPFKIGEIRAAIPKHCWVK 47 (325)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~f~~ 47 (325)
+|++.+++..+.+..++.+++..+.+.+-.|
T Consensus 7 srdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VP 37 (94)
T d1wf9a1 7 SRDGLERVSVDGPHITVSQLKTLIQDQLQIP 37 (94)
T ss_dssp CSSCEEEEEECCTTSBHHHHHHHHHHHSCCC
T ss_pred ecCCceEEEecCCCCcHHHHHHHHHHHhCCC
Confidence 4566666666655667777777776554433
No 7
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.18 E-value=77 Score=17.85 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.4
Q ss_pred hhcccCccccCCCc
Q 020540 97 GHDCGHGSFSESPL 110 (325)
Q Consensus 97 ~Hd~~H~~~~~~~~ 110 (325)
-.||||..++|.|.
T Consensus 24 CreCG~RIlYK~RT 37 (46)
T d1twfl_ 24 CKDCGHRILLKART 37 (46)
T ss_dssp CSSSCCCCCBCCCC
T ss_pred eccCCcEEEEeecc
Confidence 57899999998764
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.67 E-value=90 Score=17.45 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=9.0
Q ss_pred ccCCCcccccCCC
Q 020540 10 EVNANGVVEKGDS 22 (325)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (325)
.+-||+|++++.+
T Consensus 33 ~vGPn~v~ee~ee 45 (45)
T d1kqfb2 33 GIGPNKEVDDDEE 45 (45)
T ss_dssp HHCCBCSCSSTTC
T ss_pred eeCCCccccccCC
Confidence 3568888887753
No 9
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.44 E-value=2e+02 Score=14.39 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred hhhhcccCccccCCCchhHHHHHHHHhcc
Q 020540 95 VLGHDCGHGSFSESPLLNSFVGHILHSSI 123 (325)
Q Consensus 95 ~l~Hd~~H~~~~~~~~~N~~~g~l~~~~~ 123 (325)
.++|-|-=.-++++.+-++++-.+...|+
T Consensus 6 flqhickltglsrsgrkdellrrivdspi 34 (36)
T d1kcfa1 6 FLQHICKLTGLSRSGRKDELLRRIVDSPI 34 (36)
T ss_dssp HHHHHHHHTTCCCCSCTTHHHHHHHHCCC
T ss_pred HHHHHHHhhcccccccHHHHHHHHhcCCC
Confidence 56777777778888888888888877653
No 10
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.23 E-value=1.1e+02 Score=19.62 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=14.0
Q ss_pred cccCChhhHhHhhhhhcc
Q 020540 122 SILVPYNGWRISHRTHHQ 139 (325)
Q Consensus 122 ~~~~~~~~wr~~H~~HH~ 139 (325)
|.+++-+..+..|.+||+
T Consensus 16 P~~Is~~tm~~Hh~kHH~ 33 (88)
T d1my6a1 16 PYGMSAKTLEFHYGKHHK 33 (88)
T ss_dssp GGTCCHHHHHHHHHTHHH
T ss_pred ccccCHHHHHHHHHHHHH
Confidence 335677888899999887
Done!