Query 020541
Match_columns 325
No_of_seqs 108 out of 1123
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.4E-39 3E-44 306.9 24.5 264 38-311 57-329 (467)
2 KOG1303 Amino acid transporter 100.0 2.4E-38 5.2E-43 291.3 18.1 269 37-320 34-309 (437)
3 KOG1304 Amino acid transporter 100.0 4.6E-38 1E-42 285.0 18.9 266 37-323 43-327 (449)
4 PF01490 Aa_trans: Transmembra 100.0 5.1E-38 1.1E-42 293.7 -1.3 268 39-322 1-278 (409)
5 KOG1305 Amino acid transporter 100.0 6.8E-33 1.5E-37 254.0 12.0 273 37-320 2-276 (411)
6 PLN03074 auxin influx permease 100.0 4.3E-31 9.2E-36 248.4 19.3 259 38-321 43-316 (473)
7 COG0814 SdaC Amino acid permea 100.0 2.9E-28 6.3E-33 226.1 22.0 261 37-314 5-269 (415)
8 KOG4303 Vesicular inhibitory a 99.9 2.6E-24 5.7E-29 185.5 8.3 259 38-320 114-382 (524)
9 PRK10483 tryptophan permease; 99.8 1.4E-18 3.1E-23 159.3 22.0 244 37-299 7-252 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.8 2.6E-18 5.6E-23 158.7 22.4 238 40-296 2-241 (394)
11 PRK09664 tryptophan permease T 99.8 4.1E-18 9E-23 156.1 20.8 239 38-295 6-249 (415)
12 TIGR00837 araaP aromatic amino 99.8 3.2E-18 6.9E-23 158.7 17.6 237 47-302 3-241 (381)
13 PRK15132 tyrosine transporter 99.8 2.2E-17 4.8E-22 152.0 20.9 237 42-301 4-243 (403)
14 PRK13629 threonine/serine tran 99.7 1.6E-14 3.5E-19 132.7 21.0 241 47-300 25-280 (443)
15 TIGR00814 stp serine transport 99.7 1.6E-14 3.5E-19 133.3 20.9 238 46-301 8-255 (397)
16 TIGR00912 2A0309 spore germina 99.6 5.8E-14 1.2E-18 129.2 20.2 239 39-301 1-240 (359)
17 PF03845 Spore_permease: Spore 99.5 2.7E-12 5.8E-17 116.2 21.5 236 40-301 1-236 (320)
18 PRK10655 potE putrescine trans 99.5 1.1E-11 2.3E-16 117.2 24.4 242 37-297 4-247 (438)
19 PRK10435 cadB lysine/cadaverin 99.5 1.6E-11 3.4E-16 115.9 23.1 242 37-298 3-246 (435)
20 PRK10249 phenylalanine transpo 99.4 6E-11 1.3E-15 112.6 23.7 242 37-298 19-268 (458)
21 TIGR00905 2A0302 transporter, 99.4 8.7E-11 1.9E-15 112.0 24.7 248 37-298 5-257 (473)
22 PRK11387 S-methylmethionine tr 99.4 1.2E-10 2.6E-15 111.1 25.2 244 37-299 12-266 (471)
23 PRK10644 arginine:agmatin anti 99.4 1.1E-10 2.4E-15 110.4 24.9 243 37-298 6-250 (445)
24 TIGR01773 GABAperm gamma-amino 99.4 8.6E-11 1.9E-15 111.5 24.0 241 37-297 10-259 (452)
25 PRK11049 D-alanine/D-serine/gl 99.4 8.7E-11 1.9E-15 111.9 23.8 239 37-295 18-267 (469)
26 PRK10836 lysine transporter; P 99.4 2E-10 4.3E-15 110.0 26.4 246 37-299 13-265 (489)
27 TIGR00911 2A0308 L-type amino 99.4 8.3E-11 1.8E-15 113.0 23.4 248 37-298 40-294 (501)
28 TIGR03810 arg_ornith_anti argi 99.4 1.5E-10 3.3E-15 110.2 24.3 247 39-299 1-254 (468)
29 TIGR00909 2A0306 amino acid tr 99.4 5.9E-11 1.3E-15 111.8 21.3 248 38-296 2-252 (429)
30 PRK10238 aromatic amino acid t 99.4 1.4E-10 3E-15 110.1 23.1 235 37-292 10-253 (456)
31 PRK15049 L-asparagine permease 99.4 2.5E-10 5.4E-15 109.4 24.3 245 37-299 26-280 (499)
32 TIGR00930 2a30 K-Cl cotranspor 99.4 2.7E-11 5.8E-16 122.9 18.1 244 37-295 74-336 (953)
33 TIGR00913 2A0310 amino acid pe 99.3 3.7E-10 8.1E-15 107.9 23.8 237 38-293 1-251 (478)
34 PRK11021 putative transporter; 99.3 4.2E-10 9.1E-15 105.4 23.5 227 42-294 2-232 (410)
35 TIGR00906 2A0303 cationic amin 99.3 2.2E-10 4.8E-15 111.0 21.8 255 37-297 26-289 (557)
36 PRK10580 proY putative proline 99.3 1E-09 2.2E-14 104.2 25.5 238 37-294 7-254 (457)
37 PRK10746 putative transport pr 99.3 8.7E-10 1.9E-14 104.7 23.8 244 37-298 8-259 (461)
38 KOG1287 Amino acid transporter 99.3 4.6E-11 1E-15 110.4 14.1 244 37-296 10-261 (479)
39 PRK11357 frlA putative fructos 99.2 2.5E-09 5.4E-14 101.3 23.1 240 37-295 6-251 (445)
40 TIGR00908 2A0305 ethanolamine 99.2 3.3E-09 7.1E-14 100.4 21.6 237 37-293 5-245 (442)
41 PF13520 AA_permease_2: Amino 99.2 3.6E-09 7.7E-14 99.6 21.2 238 42-300 2-247 (426)
42 KOG3832 Predicted amino acid t 99.2 5.1E-10 1.1E-14 90.9 13.0 222 42-270 13-303 (319)
43 COG1113 AnsP Gamma-aminobutyra 99.2 9.4E-09 2E-13 93.9 21.8 236 37-291 11-255 (462)
44 PRK10197 gamma-aminobutyrate t 99.1 1.4E-08 3.1E-13 96.1 22.2 226 50-296 3-238 (446)
45 COG0531 PotE Amino acid transp 99.1 4.8E-08 1E-12 92.9 23.1 249 37-300 10-262 (466)
46 COG0833 LysP Amino acid transp 99.0 1.2E-07 2.6E-12 88.6 19.7 240 37-292 42-287 (541)
47 KOG1286 Amino acid transporter 98.9 6.9E-09 1.5E-13 99.3 10.5 251 37-294 28-287 (554)
48 TIGR03428 ureacarb_perm permea 98.9 7.7E-07 1.7E-11 85.1 24.5 259 37-300 11-274 (475)
49 PRK15238 inner membrane transp 98.8 2.5E-06 5.3E-11 82.0 24.6 247 37-295 5-267 (496)
50 PF00324 AA_permease: Amino ac 98.6 4.6E-07 9.9E-12 86.7 11.5 238 50-301 6-262 (478)
51 TIGR00907 2A0304 amino acid pe 98.6 9.3E-06 2E-10 77.8 20.2 253 37-299 10-277 (482)
52 TIGR00910 2A0307_GadC glutamat 98.5 4.3E-05 9.2E-10 73.6 22.1 234 37-292 2-247 (507)
53 PRK11375 allantoin permease; P 98.4 0.00019 4.2E-09 68.6 24.0 261 32-301 19-293 (484)
54 COG3949 Uncharacterized membra 98.4 6E-05 1.3E-09 66.4 18.7 100 44-144 6-108 (349)
55 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.00032 6.9E-09 66.5 24.8 257 37-301 10-273 (442)
56 TIGR03813 put_Glu_GABA_T putat 98.3 0.00026 5.6E-09 67.8 22.2 52 248-299 202-254 (474)
57 PRK12488 acetate permease; Pro 97.8 0.012 2.7E-07 57.3 24.0 147 37-204 65-214 (549)
58 TIGR02119 panF sodium/pantothe 97.8 0.013 2.9E-07 56.0 23.8 149 37-204 38-191 (471)
59 TIGR00813 sss transporter, SSS 97.8 0.01 2.2E-07 55.6 22.7 146 38-203 2-149 (407)
60 PRK09442 panF sodium/panthothe 97.8 0.015 3.2E-07 55.9 23.5 148 37-203 39-191 (483)
61 COG0591 PutP Na+/proline sympo 97.7 0.02 4.4E-07 55.0 24.0 147 37-202 36-187 (493)
62 TIGR00835 agcS amino acid carr 97.7 0.0014 3E-08 61.1 15.2 105 38-143 44-158 (425)
63 PF00474 SSF: Sodium:solute sy 97.6 0.0051 1.1E-07 57.6 17.9 149 38-206 5-156 (406)
64 KOG1289 Amino acid transporter 97.6 0.002 4.3E-08 60.8 14.5 63 238-300 250-313 (550)
65 PRK09395 actP acetate permease 97.6 0.042 9.1E-07 53.7 24.4 146 37-202 67-214 (551)
66 PF02554 CstA: Carbon starvati 97.5 0.014 3E-07 52.8 17.5 107 37-143 48-155 (376)
67 TIGR02711 symport_actP cation/ 97.4 0.065 1.4E-06 52.3 23.1 145 38-203 66-213 (549)
68 PRK11017 codB cytosine permeas 97.4 0.048 1E-06 51.1 21.4 207 68-301 38-245 (404)
69 COG1457 CodB Purine-cytosine p 97.4 0.059 1.3E-06 50.5 20.6 171 105-302 84-258 (442)
70 TIGR02358 thia_cytX probable h 97.4 0.084 1.8E-06 49.1 21.8 208 69-301 26-234 (386)
71 COG1953 FUI1 Cytosine/uracil/t 97.3 0.11 2.4E-06 48.9 22.1 273 37-316 37-323 (497)
72 PF02133 Transp_cyt_pur: Perme 97.3 0.0048 1E-07 58.5 13.6 250 37-297 5-259 (440)
73 TIGR03648 Na_symport_lg probab 97.3 0.11 2.4E-06 50.8 22.9 146 37-202 30-177 (552)
74 TIGR00796 livcs branched-chain 97.2 0.21 4.5E-06 46.2 22.8 74 49-127 3-79 (378)
75 PRK15015 carbon starvation pro 97.1 0.04 8.7E-07 53.4 16.8 107 37-143 79-186 (701)
76 COG1966 CstA Carbon starvation 96.9 0.14 3.1E-06 48.6 18.0 107 37-143 48-155 (575)
77 KOG2083 Na+/K+ symporter [Inor 96.6 0.0044 9.6E-08 58.9 6.3 232 37-292 26-276 (643)
78 KOG1288 Amino acid transporter 96.6 0.0091 2E-07 57.7 8.0 251 37-295 63-350 (945)
79 PRK10484 putative transporter; 96.5 0.9 2E-05 44.1 24.7 157 37-203 36-194 (523)
80 TIGR02121 Na_Pro_sym sodium/pr 96.4 0.97 2.1E-05 43.5 22.7 147 37-203 34-189 (487)
81 PRK15419 proline:sodium sympor 96.3 1.2 2.7E-05 43.0 22.9 147 37-203 38-193 (502)
82 COG0733 Na+-dependent transpor 96.2 0.06 1.3E-06 50.1 10.8 249 37-293 5-268 (439)
83 COG4147 DhlC Predicted symport 95.7 1.9 4E-05 40.7 17.9 220 56-297 59-294 (529)
84 PF01235 Na_Ala_symp: Sodium:a 95.6 1 2.2E-05 42.1 16.2 86 37-123 15-110 (416)
85 TIGR00796 livcs branched-chain 94.7 0.49 1.1E-05 43.8 11.4 79 69-147 221-300 (378)
86 PF05525 Branch_AA_trans: Bran 94.3 0.4 8.7E-06 44.9 10.0 84 65-148 223-307 (427)
87 KOG2466 Uridine permease/thiam 94.3 1.6 3.5E-05 41.1 13.5 267 37-313 52-334 (572)
88 TIGR00906 2A0303 cationic amin 92.7 7.7 0.00017 38.0 16.4 56 102-162 299-354 (557)
89 COG1115 AlsT Na+/alanine sympo 92.5 6.8 0.00015 36.8 14.7 159 37-216 59-229 (452)
90 TIGR00909 2A0306 amino acid tr 91.5 12 0.00026 35.1 17.5 56 102-162 264-319 (429)
91 PF00209 SNF: Sodium:neurotran 90.6 11 0.00025 36.5 15.1 54 242-295 251-305 (523)
92 COG1114 BrnQ Branched-chain am 89.4 8.6 0.00019 35.8 12.1 98 51-148 208-309 (431)
93 KOG3660 Sodium-neurotransmitte 88.4 10 0.00022 37.6 12.7 108 37-144 34-147 (629)
94 PRK15433 branched-chain amino 88.3 6.2 0.00013 37.3 10.7 79 68-146 230-309 (439)
95 PRK00701 manganese transport p 82.0 48 0.001 31.5 19.7 41 100-140 92-132 (439)
96 KOG2082 K+/Cl- cotransporter K 80.7 7.4 0.00016 38.9 7.7 101 42-143 116-220 (1075)
97 KOG1289 Amino acid transporter 80.4 38 0.00083 32.8 12.2 49 100-148 323-371 (550)
98 PF13520 AA_permease_2: Amino 72.6 57 0.0012 30.4 11.4 54 104-162 260-313 (426)
99 KOG1287 Amino acid transporter 72.3 37 0.0008 32.5 9.7 84 104-193 275-359 (479)
100 PRK10644 arginine:agmatin anti 71.3 70 0.0015 30.2 11.7 47 101-147 259-305 (445)
101 PF05525 Branch_AA_trans: Bran 69.9 1E+02 0.0022 29.2 17.6 75 42-120 4-81 (427)
102 TIGR03810 arg_ornith_anti argi 68.2 1.1E+02 0.0024 29.1 13.2 54 104-162 266-319 (468)
103 PRK10435 cadB lysine/cadaverin 67.9 1.1E+02 0.0024 28.8 12.7 58 100-162 254-311 (435)
104 PF01566 Nramp: Natural resist 67.7 1E+02 0.0022 28.3 18.6 44 100-143 40-83 (358)
105 PHA02764 hypothetical protein; 66.4 26 0.00056 31.6 6.9 91 37-130 10-105 (399)
106 TIGR00905 2A0302 transporter, 66.2 1.1E+02 0.0025 29.1 12.1 54 104-162 270-323 (473)
107 COG4145 PanF Na+/panthothenate 65.8 1.1E+02 0.0025 28.3 18.6 106 38-145 38-150 (473)
108 PRK10655 potE putrescine trans 62.7 1.4E+02 0.003 28.1 12.9 56 102-162 258-313 (438)
109 PRK09950 putative transporter; 59.8 1.1E+02 0.0024 29.6 10.5 156 42-208 85-267 (506)
110 PRK03356 L-carnitine/gamma-but 58.2 1.8E+02 0.004 28.2 12.2 103 42-144 87-216 (504)
111 TIGR00930 2a30 K-Cl cotranspor 58.0 2.5E+02 0.0055 29.7 16.9 34 116-149 386-419 (953)
112 PRK11021 putative transporter; 57.8 1.6E+02 0.0034 27.5 11.2 47 102-148 246-292 (410)
113 TIGR00842 bcct choline/carniti 57.1 1.1E+02 0.0024 29.1 10.0 105 40-144 36-166 (453)
114 PRK15433 branched-chain amino 55.7 1.9E+02 0.0041 27.5 18.1 74 42-120 9-85 (439)
115 PHA02680 ORF090 IMV phosphoryl 54.1 62 0.0014 22.9 5.7 56 246-302 17-73 (91)
116 TIGR00907 2A0304 amino acid pe 52.5 2.2E+02 0.0047 27.2 16.4 47 102-148 289-336 (482)
117 TIGR00908 2A0305 ethanolamine 51.3 2.1E+02 0.0046 26.8 14.7 57 101-162 259-317 (442)
118 PRK11387 S-methylmethionine tr 51.2 2.3E+02 0.0049 27.0 12.3 57 101-162 274-330 (471)
119 PF02028 BCCT: BCCT family tra 51.0 2.4E+02 0.0052 27.3 13.1 160 38-208 72-257 (485)
120 PF00324 AA_permease: Amino ac 50.8 12 0.00026 35.8 2.5 47 103-149 275-321 (478)
121 KOG2349 Na+:iodide/myo-inosito 50.8 13 0.00028 36.4 2.7 93 37-130 43-136 (585)
122 COG4709 Predicted membrane pro 48.3 1.6E+02 0.0034 24.4 8.9 59 37-99 72-131 (195)
123 PRK11357 frlA putative fructos 46.1 2.6E+02 0.0056 26.3 11.7 47 102-148 264-312 (445)
124 PF04835 Pox_A9: A9 protein co 44.0 78 0.0017 20.1 4.5 34 269-303 19-52 (54)
125 PF05915 DUF872: Eukaryotic pr 42.9 1.4E+02 0.003 22.5 6.7 66 42-107 40-112 (115)
126 PF02468 PsbN: Photosystem II 42.0 25 0.00054 21.4 2.0 27 276-302 5-31 (43)
127 COG1914 MntH Mn2+ and Fe2+ tra 41.8 3.1E+02 0.0067 25.9 19.3 99 40-143 16-118 (416)
128 TIGR00911 2A0308 L-type amino 41.5 3.3E+02 0.0071 26.2 12.9 42 106-148 308-349 (501)
129 PRK09928 choline transport pro 40.9 2.5E+02 0.0054 28.4 9.8 104 40-143 92-219 (679)
130 PRK13183 psbN photosystem II r 40.8 30 0.00064 21.3 2.2 29 273-301 5-33 (46)
131 KOG2466 Uridine permease/thiam 38.0 93 0.002 29.9 6.0 157 113-292 340-514 (572)
132 CHL00020 psbN photosystem II p 36.4 25 0.00055 21.3 1.4 27 275-301 4-30 (43)
133 KOG3659 Sodium-neurotransmitte 35.4 4.6E+02 0.01 26.1 17.4 76 38-113 79-159 (629)
134 TIGR03750 conj_TIGR03750 conju 35.2 1.9E+02 0.0042 21.7 8.2 67 38-104 15-81 (111)
135 TIGR00910 2A0307_GadC glutamat 34.0 4.4E+02 0.0096 25.5 16.6 34 114-147 280-313 (507)
136 PF03169 OPT: OPT oligopeptide 33.9 2.8E+02 0.0062 27.6 9.3 62 53-115 365-428 (624)
137 PHA03048 IMV membrane protein; 30.5 1.7E+02 0.0037 20.9 4.9 58 246-305 17-74 (93)
138 TIGR03813 put_Glu_GABA_T putat 27.0 5.5E+02 0.012 24.4 16.6 38 109-146 273-310 (474)
139 TIGR01773 GABAperm gamma-amino 26.9 5.4E+02 0.012 24.2 14.9 46 103-148 272-317 (452)
140 TIGR01197 nramp NRAMP (natural 26.7 5.3E+02 0.011 24.1 14.7 31 100-130 62-92 (390)
141 PRK13875 conjugal transfer pro 26.3 5.7E+02 0.012 24.3 9.2 105 172-283 171-282 (440)
142 PRK15238 inner membrane transp 25.9 5.9E+02 0.013 24.4 13.6 31 110-140 310-340 (496)
143 PF05767 Pox_A14: Poxvirus vir 24.7 2.1E+02 0.0046 20.5 4.6 55 246-302 17-72 (92)
144 PRK10238 aromatic amino acid t 24.5 6.1E+02 0.013 24.0 15.2 48 101-148 268-315 (456)
145 TIGR03717 R_switched_YjbE inte 23.7 4.1E+02 0.0088 21.7 8.1 63 38-100 91-155 (176)
146 TIGR00913 2A0310 amino acid pe 23.2 6.5E+02 0.014 23.9 13.1 46 103-148 276-321 (478)
147 KOG2174 Leptin receptor gene-r 21.8 3E+02 0.0064 21.1 5.2 31 43-73 65-95 (131)
148 PF09716 ETRAMP: Malarial earl 21.8 85 0.0018 22.2 2.3 40 261-300 41-80 (84)
149 COG0531 PotE Amino acid transp 21.7 6.6E+02 0.014 23.4 13.1 47 102-148 272-318 (466)
150 PLN00151 potassium transporter 21.7 8E+02 0.017 25.6 9.6 18 244-261 382-399 (852)
151 TIGR02840 spore_YtaF putative 21.6 4.6E+02 0.01 21.9 7.1 30 65-94 150-179 (206)
152 PHA02898 virion envelope prote 21.4 2.8E+02 0.006 19.8 4.6 60 246-307 17-77 (92)
153 PRK10836 lysine transporter; P 21.4 7.2E+02 0.016 23.7 15.9 47 103-149 283-329 (489)
154 PF07857 DUF1632: CEO family ( 21.0 4.3E+02 0.0093 23.1 6.9 21 76-96 223-243 (254)
155 TIGR00267 conserved hypothetic 20.9 1.1E+02 0.0025 24.7 3.2 30 39-68 85-114 (169)
156 COG3476 Tryptophan-rich sensor 20.7 2.5E+02 0.0054 22.6 4.9 14 285-298 55-68 (161)
157 PRK10197 gamma-aminobutyrate t 20.5 7.2E+02 0.016 23.4 13.9 47 103-149 252-298 (446)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.4e-39 Score=306.95 Aligned_cols=264 Identities=26% Similarity=0.404 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHH
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (325)
-.+++..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.++.++.+..+|+|++++++||+++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhH
Q 020541 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS 197 (325)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s 197 (325)
+++++.+++.++|+|++|+++.+|.++++++.... .++.+. ....|. .+.++++++++|++++|+++.++++|
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~-~~~~r~-~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQ-KSGNRL-LTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhh-ccCcEE-eeeehhhhHhhhcccccchHHHHHHH
Confidence 99999999999999999999999999887753211 112111 111232 22334556899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC---CCCCC----CCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541 198 ALSVGLAIVFVVITAGVAIVKTIDGS---ISMPC----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (325)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~ 270 (325)
.++++ ++++..+.++ .+...++. .++.+ ..++........+++.++|+++|||.+|.+++++++||+||+
T Consensus 210 ~i~~~-~i~~~vi~iv--i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t 286 (467)
T PTZ00206 210 TIAVS-FMVYLVIVIV--VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRS 286 (467)
T ss_pred HHHHH-HHHHHHhhhh--hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence 99984 3333333221 11111211 11000 011111122234678899999999999999999999999866
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCC
Q 020541 271 --QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD 311 (325)
Q Consensus 271 --~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~ 311 (325)
|+.+++.+++.+++++|.++|+.||+.||+++++++++|++
T Consensus 287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~ 329 (467)
T PTZ00206 287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYD 329 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCC
Confidence 88899999999999999999999999999999999999995
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=291.26 Aligned_cols=269 Identities=22% Similarity=0.398 Sum_probs=219.9
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS------KSATYSGVVAD 110 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~------~~~~y~~l~~~ 110 (325)
++|+.|++++.++.++.++|.|+|+|||+++++||+.|+++++..++++.||..+|.+|.+.+ ++++|+|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999876 34569999999
Q ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccccc
Q 020541 111 AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRV 190 (325)
Q Consensus 111 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l 190 (325)
+||+++++++.+.+.+.++++++.|++..+|++..+++....+.. ....+.+. ++..++.+|++++|++
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---------~l~~~~f~--iif~~i~~~~s~lp~~ 182 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---------SLDKQYFI--IIFGLIVLPLSQLPNF 182 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------cccceehh--hhHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999888875444321 11123332 3344689999999999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541 191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (325)
Q Consensus 191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~ 270 (325)
..+++.|..+.+++..+..+.++........... .....+...+.. ..++++|+++|+|.+|.++|++|++||+|+
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~-~~~~~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p~ 258 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCA-PSGGYLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSPP 258 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCC-cccCcccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCch
Confidence 9999999999988877766666554333211101 101111111111 117999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCC-CCCCchhhh
Q 020541 271 QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD-GDLGIPYSS 320 (325)
Q Consensus 271 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~-~~~~~~~~~ 320 (325)
+++|++..++.+++++|+.+++.||++|||+++++++.|+. +.......+
T Consensus 259 ~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~an 309 (437)
T KOG1303|consen 259 KFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALAN 309 (437)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHH
Confidence 99999999999999999999999999999999999999995 444444443
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=284.97 Aligned_cols=266 Identities=22% Similarity=0.358 Sum_probs=215.5
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS------KSATYSGVVAD 110 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~------~~~~y~~l~~~ 110 (325)
.++..|..++..|+.|.++|+|+|+||++|+++|++.|.+...+.++++.||.+.+++|.++- ...+|++.++.
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999998742 34567777765
Q ss_pred H----------cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHH
Q 020541 111 A----------FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV 180 (325)
Q Consensus 111 ~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i 180 (325)
+ +||++|++++++++++++|.|++|++++++++.++.+. .. ...++.+.+++ +.++.
T Consensus 123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~----------~~-~~~~s~~~~i~--~~~~~ 189 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE----------HS-PGVLSVRLYIL--IQLPP 189 (449)
T ss_pred HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc----------cC-CCCccHHHHHH--HHHHH
Confidence 5 48999999999999999999999999999999887751 11 11123444433 34557
Q ss_pred hhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchh
Q 020541 181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIH 260 (325)
Q Consensus 181 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~ 260 (325)
++|++++|+++.|..+|.++.++. ++.+++..++..++.. +....|.+ ..+.++...+|+.+|||+++.++.
T Consensus 190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~----~~g~~ii~~y~~~~~~-~~~~~~~~---~~~~~~~lf~GtaifafEGig~VL 261 (449)
T KOG1304|consen 190 LLLLNLIRNLKILSPFSLFANVFI----LVGLAIIMYYLVQDLP-PTSDLPAV---TGWSGLPLFFGTAIFAFEGIGMVL 261 (449)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHH----HHHHHHHHHHHHhccC-Cccccccc---cchhhhHHHHHHHHHHhccceEEE
Confidence 888888988888888888777433 3334444455444422 22223333 335567788999999999999999
Q ss_pred HHHhhcCCCcchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCCCchhhhhcc
Q 020541 261 PIENELKDPTQIK---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLD 323 (325)
Q Consensus 261 ~i~~~m~~p~~~~---~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~l~ 323 (325)
|++++||+|++++ +++..++.+++++|..+|++||++||+++++.|++|+|++..+...+++.
T Consensus 262 PlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ 327 (449)
T KOG1304|consen 262 PLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLL 327 (449)
T ss_pred ehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999977666666553
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5.1e-38 Score=293.71 Aligned_cols=268 Identities=31% Similarity=0.576 Sum_probs=218.3
Q ss_pred CCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHcCh
Q 020541 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SKSATYSGVVADAFGG 114 (325)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~~~~y~~l~~~~~G~ 114 (325)
+|.|.++++++++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++ .+..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999985 4788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
++++++++++.+.++|.+++|+++.+|.+.++++....+ . ...+. .+.++..++++|++++|+++.++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----------~-~~~~~-~~~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----------L-FISRY-VWIIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----------c-ccccc-ccccccccccccccccchhhHHH
Confidence 999999999999999999999999999998887643211 0 11222 22334556899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc--ccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcch
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQI 272 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~~ 272 (325)
+.|.++.++....+.+.+ . ........+++..+. .....++.+++.++++++|||.+|+++|++++|||+|+|+
T Consensus 149 ~~s~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~ 224 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVV-I---YIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF 224 (409)
T ss_pred HHhhhhhhccceeeeeec-c---eeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence 999999854332211111 1 111111111111111 1223456789999999999999999999999999999987
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCC-Cchhhhhc
Q 020541 273 K---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL-GIPYSSLL 322 (325)
Q Consensus 273 ~---~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~-~~~~~~~l 322 (325)
+ ++..+++.+++++|.++|+.||++||+++++|++.|+++++ ...+.+++
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~ 278 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARIL 278 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCccccccccccc
Confidence 7 99999999999999999999999999999999999999886 55555554
No 5
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-33 Score=253.98 Aligned_cols=273 Identities=37% Similarity=0.600 Sum_probs=220.5
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (325)
.+++.|.+.++++++|+++|+|+|++|++|++.|.+.|++++.+++.++.++.+++.++.++.+..+|+++++..+|+.+
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLG 81 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCc
Confidence 46778999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhh
Q 020541 117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYT 196 (325)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~ 196 (325)
+....+.......| +++|++.++|.++..... ...+++.+.+ |+.|.+.+.+....+++|+++.|+++++++.
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~-----~~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t 154 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRS-----LFLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYT 154 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhh-----cccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence 76666666666666 699999999999744332 2223333333 5566665566667799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc--chhH
Q 020541 197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT--QIKS 274 (325)
Q Consensus 197 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~--~~~~ 274 (325)
|.++....+.++.+++ ++........++..+.......+++.+.++|+++|||.||+++.++++||+||+ |+.+
T Consensus 155 S~~s~~~~~~fv~~vv----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~ 230 (411)
T KOG1305|consen 155 SALSLASVVYFVVLVV----YKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence 9999855444433332 232332211122222222223336889999999999999999999999999999 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCCCchhhh
Q 020541 275 IVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSS 320 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~ 320 (325)
+...+...++++|..+|+.||+.||+++.+|++.|++++......+
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~ 276 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRS 276 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhh
Confidence 9999999999999999999999999999999999999877665433
No 6
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=4.3e-31 Score=248.45 Aligned_cols=259 Identities=14% Similarity=0.101 Sum_probs=198.4
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC--C-------CCH
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SK--S-------ATY 104 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~--~-------~~y 104 (325)
+++.+..++.+++++..+|.|+|+||++|+++||+.|++.+++.++++.||.+++.++..+ ++ . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999886543 21 1 257
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 020541 105 SGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL 184 (325)
Q Consensus 105 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl 184 (325)
.|+++..+||+++.+..+...+++++.++.|++..++.+..+.. ..+.|.+.++ ...+..|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~----------------~~~~~~~~~i--~~~v~~~~ 184 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND----------------NLDKRTWTYI--FGACCATT 184 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC----------------CcCCCeEEee--hHHHHHHH
Confidence 89999999999999999999999999999999988876643310 0123332222 22366778
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHh
Q 020541 185 ISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIEN 264 (325)
Q Consensus 185 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~ 264 (325)
+++|++++++++|.+++..++.....++.... .++..+. .+. +...++..++.++++++|+|.+|.++|++++
T Consensus 185 ~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i---~~~~~~~---~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~ 257 (473)
T PLN03074 185 VFIPSFHNYRIWSFLGLLMTTYTAWYMTIAAL---SHGQVEG---VKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMH 257 (473)
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCC---CCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 88999999999999997543332222221111 1121111 111 1123456677888889999999999999999
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hhhhcCCCCCCCchhhhh
Q 020541 265 ELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL--DDVLANFDGDLGIPYSSL 321 (325)
Q Consensus 265 ~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~--~~il~n~~~~~~~~~~~~ 321 (325)
+||||++++++..++....+..|+.+++.||++|||+++ .+.++|+|++....+.++
T Consensus 258 ~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~ 316 (473)
T PLN03074 258 AMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVI 316 (473)
T ss_pred hccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHH
Confidence 999999999999999999999999999999999999875 466888987654444444
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-28 Score=226.13 Aligned_cols=261 Identities=24% Similarity=0.357 Sum_probs=212.3
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA--TYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~--~y~~l~~~~~G~ 114 (325)
.+.+.+..+.++++.++++|+|+|+||++++..|++.+++++++++.++.++.+++.|+..+.+.. ++.+++++.+||
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~ 84 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGK 84 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCc
Confidence 567789999999999999999999999999999999999999999999999999999999998765 999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
++++++++.+.+.+++.+.+|.+..++.+++.+++. ++... ..|.....++. .++.++++.++...++
T Consensus 85 ~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~----------~~~~~-~~r~~~~lif~-~~~~~l~~~~~~~~lk 152 (415)
T COG0814 85 KGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ----------FGLNP-LPRKLGSLIFA-LVLAFLSWLGTLAVLK 152 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh----------cccCC-cchHHHHHHHH-HHHHHHHHhchhHHHH
Confidence 999999999999999999999999999997776531 11110 13444444443 4667799999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-c-h
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q-I 272 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~-~ 272 (325)
..+.+.... +.++++.. .+..-+.+...-...|... ...+..+..++|+++|||.+|+++|+++++||+++ + .
T Consensus 153 ~ts~l~~~~-v~~~~~l~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~ 227 (415)
T COG0814 153 ITSLLVFGK-VIYLVLLV---VYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAV 227 (415)
T ss_pred HHHHHHHHH-HHHHHHHH---HHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHH
Confidence 999988743 33333222 2222221111111111111 24566788999999999999999999999999887 4 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCC
Q 020541 273 KSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~ 314 (325)
+|+...+..+..++|..+++.+|..+|+.+.+++++++++++
T Consensus 228 ~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 228 RKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI 269 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence 999999999999999999999999999999999999997654
No 8
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.90 E-value=2.6e-24 Score=185.53 Aligned_cols=259 Identities=15% Similarity=0.203 Sum_probs=209.0
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCCHHHHHH
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK--------SATYSGVVA 109 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~--------~~~y~~l~~ 109 (325)
..+++-+|+..+..|++=|.=+++||++...+||+ ++..++.++.+++||..+|++|..+.+ +++|..++.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 46889999999999999999999999999999986 899999999999999999999998753 679999999
Q ss_pred HHcCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 020541 110 DAFGG-AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (325)
Q Consensus 110 ~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~ 188 (325)
..++| .|++.+.+.+++.+...|+.|+++.+|.++.-+|..+. .++.+.+ +....++|..++|
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv--------------d~~sWm~--i~~a~LLpc~FLk 256 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV--------------DKASWMM--ITSASLLPCSFLK 256 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCc--------------cccchhh--hhhHHHhhhHHHH
Confidence 98877 45699999999999999999999999999777664221 1233232 2334789999998
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTID-GSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (325)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~ 267 (325)
+++.++.+|++.. +.-+++=+....|++.+ ++..+. .+....+..++..++|+++|+|..|.-+|.+...|+
T Consensus 257 ~Lk~VS~lSf~ct---~sH~viN~i~v~YCLs~~~dW~ws----kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~ 329 (524)
T KOG4303|consen 257 DLKIVSRLSFFCT---ISHLVINLIMVLYCLSFVSDWSWS----KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMK 329 (524)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccce----eEEEEEEcccCceEEEEEEEeeeceeeccccccccC
Confidence 8888777777665 33344444444565443 222221 222233445677889999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCCCchhhh
Q 020541 268 DPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSS 320 (325)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~ 320 (325)
+|+++...+.|+=+...++-..+|..||++|++.+++.|++|+|+.+.-.+.+
T Consensus 330 ~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN 382 (524)
T KOG4303|consen 330 NPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVN 382 (524)
T ss_pred ChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhh
Confidence 99999999999999999999999999999999999999999999866544433
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.83 E-value=1.4e-18 Score=159.32 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=173.3
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~ 115 (325)
++++.+.+.+++.+.++++|+|+|++|.+.++.|+..+++.++++|.+..||+.++.|++.+. +..++.+++++.+||+
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~ 86 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKG 86 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH
Confidence 678889999999999999999999999999999999999999999999999999999998875 5668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
|+.+.++.+.+..++.+.+|..-.|+.+++.+++. ..++ +.+. .......+...++.. -.|..+++.+
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i-~~~~------~~llF~~~~~~iv~~---gt~~vd~~n~ 154 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNV-PARA------AGFGFALLVAFVVWL---STKAVSRMTA 154 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCC-cHHH------HHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 99999999999999999999999999997777531 0011 1110 111111111111111 1233444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhH
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKS 274 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~ 274 (325)
.-..+.+.+. ...+.. .....+.+ .-...+ +..+..+.....++|++++||..|+++|++.+.++ |++|.+|
T Consensus 155 ~l~~~~i~~f---~~~~~~-l~~~i~~~--~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~ 227 (414)
T PRK10483 155 IVLGAKVITF---FLTFGS-LLGHVQPA--TLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK 227 (414)
T ss_pred HHHHHHHHHH---HHHHHH-HHhhcCHH--HHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence 4343332211 111111 11111110 000011 11112234567889999999999999999999988 4669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 275 IVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
++..+..+..++|+..-..+...-+
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~ 252 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIP 252 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997776666544
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.82 E-value=2.6e-18 Score=158.71 Aligned_cols=238 Identities=21% Similarity=0.281 Sum_probs=168.1
Q ss_pred CCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHH
Q 020541 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRA 118 (325)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~ 118 (325)
+.+.+.+++.+.++++|+|+|+||++....|...+.+.+++++.+++++..++.|+..+. +..++.+++++.+||++++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 457899999999999999999999999999999999999999999999999999999877 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHH
Q 020541 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (325)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~ 198 (325)
+..+.+.+..++.+.+|..-.++.+.+.++..... + .+.+. ...++.. ++..+... ..+.+.+...
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~---~~~~~-~~~~f~~-i~~~iv~~-g~~~v~~~n~ 147 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------D---LSPWL-SSLLFTI-IFGGIVYF-GTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------C---CcHHH-HHHHHHH-HHHHHHHh-hHHHHHHHHH
Confidence 99999999999999999999999997776532110 0 11111 1111111 11111111 1123333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHH
Q 020541 199 LSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVR 277 (325)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~~~~ 277 (325)
+-+..-+..+...+...+.+ .+.+ +.........++.....++|+.++||..|+++|++.+.++ |++|.+|++.
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~---~~~~--~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~ 222 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPH---WNPS--NLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAII 222 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhh---cCHH--HhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHH
Confidence 22211111112222111111 1111 1111011123456678899999999999999999999999 6669999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020541 278 TSITLCSTVYITTSFFGLL 296 (325)
Q Consensus 278 ~~~~~~~~~y~~~g~~gy~ 296 (325)
++..+..++|++.-...-.
T Consensus 223 ~Gs~i~lv~yl~w~~~~lg 241 (394)
T PF03222_consen 223 IGSLIPLVMYLLWVFSILG 241 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999987665543
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.81 E-value=4.1e-18 Score=156.10 Aligned_cols=239 Identities=14% Similarity=0.147 Sum_probs=164.6
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhH
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAG 116 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~ 116 (325)
++|.+.+.+++.+.++++|+|+|++|.+.+++|+..+++.+++++.+..||+.++.|++.+. +..++.+++++.+||+|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 34448888999999999999999999999999999999999999999999999999999887 56689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccchhh
Q 020541 117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLR 194 (325)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~--~~~l~~l~ 194 (325)
+.+.++...+..++.+.+|..-.|+.+++.+++.. +. + .+.+ ... +...+++-++.. .|..+++.
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~---~~-----~---i~~~-~~~-llF~~~~~~~v~~gt~~vd~~n 152 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISMNL---GY-----H---ANPR-IVG-ICTAIFVASVLWISSLAASRIT 152 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc---cC-----C---CcHH-HHH-HHHHHHHHHHHHhchhHHHHHH
Confidence 99999999999999999999999999977764210 00 0 0111 111 111112222221 23344444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcch
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQI 272 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~ 272 (325)
+.-......+ ++..+...... .+. +.-...+... ....+..+..++|++++||..|+++|++.+.++ |++|.
T Consensus 153 r~l~~~~ii~---f~~~~~~l~~~-i~~--~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~ 226 (415)
T PRK09664 153 SLFLGLKIIS---FVIVFGSFFFQ-VDY--SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKL 226 (415)
T ss_pred HHHHHHHHHH---HHHHHHHHhhc-ccH--HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHH
Confidence 4333332111 11111111111 110 0001111111 001123467789999999999999999999988 45688
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020541 273 KSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
+|++..+..+..++|+..-....
T Consensus 227 ~kaIl~Gs~IpLviY~~W~~~il 249 (415)
T PRK09664 227 IKSVVFGSLLALVIYLFWLYCTM 249 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999977655443
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.79 E-value=3.2e-18 Score=158.66 Aligned_cols=237 Identities=15% Similarity=0.225 Sum_probs=170.0
Q ss_pred HHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHHHHHHHH
Q 020541 47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRALLQVCIV 125 (325)
Q Consensus 47 ~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (325)
+...+++++|+|+|++|..+.+.|+..+++.+++++.++.++..++.|...+.+ ..++.+++++++||++++++++...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 455789999999999999999999999999999999999999999999988774 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHH
Q 020541 126 VNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI 205 (325)
Q Consensus 126 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 205 (325)
+.++..+.+|.+..++.+...++. +.... . .+.....+ ..+++. ....+..+...+++.+.++..+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~----------~~~~~-~-~~~~~~~~-~~~v~~-~l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGE----------YFGFP-W-SARAIVLI-FTVLFG-SFVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHH----------hcCCC-c-cHHHHHHH-HHHHHH-HHHHhchhHHHHHHHHHHHHHH
Confidence 999999999999999888665542 11111 1 12222222 222222 3334455666666666654333
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHHHHHHHHH
Q 020541 206 VFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVRTSITLCS 284 (325)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~~~~~~~ 284 (325)
..+++.+.....+ .+. .+..|.......+.++..+++...++|..|.+++.+.++++ |++|.+|+..++..+.+
T Consensus 149 ~~l~~~ii~~~~~---~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 149 IAFALVFSGLLPH---VKG--DLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHhh---ccH--HHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 3322222222111 111 11111100012345677889999999988889999999997 55599999999999999
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 020541 285 TVYITTSFFGLLLFGDRT 302 (325)
Q Consensus 285 ~~y~~~g~~gy~~fG~~~ 302 (325)
++|+++........+.+.
T Consensus 224 ~lY~l~~~~~~g~~~~~~ 241 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSE 241 (381)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999988887776443
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.78 E-value=2.2e-17 Score=151.98 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=166.5
Q ss_pred cHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHH
Q 020541 42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALL 120 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~~~ 120 (325)
+...+++.+.++++|+|+|++|.+....|++.+++.+++++.+..|+.+++.|++.+. +..++.+++++.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999987775 457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHH-HhhccccccccchhhhhHHH
Q 020541 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLF-VFLPLISFRRVDSLRYTSAL 199 (325)
Q Consensus 121 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-i~~pl~~~~~l~~l~~~s~~ 199 (325)
.+.+.+..+..+.+|..-.|+.+.+.+++ +.+.+ .+... ...++.++ ..+...-.|...++...-..
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~----------~~~~~-i~~~~-~~l~F~~~~~~iv~~g~~~v~~~n~~L~~ 151 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISD----------WTGIS-MSPTA-GVLLFTLVAGGVVCVGTSSVDLFNRFLFS 151 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHH----------hccCC-CChHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999888666532 21111 01111 11111111 11111122333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHHH
Q 020541 200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVRT 278 (325)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~ 278 (325)
..+++ ++......+.+ .+.+.-...| +. .+ -+..++|++++||..|+++|++.+.++ |++|.+|++..
T Consensus 152 ~~ii~---~~~~~~~l~p~---~~~~~L~~~~-~~--~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~ 220 (403)
T PRK15132 152 AKIIF---LVVMLALMMPH---IHKVNLLTLP-LQ--QG--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII 220 (403)
T ss_pred HHHHH---HHHHHHHHHHh---cCHHHHhcCC-cc--cc--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence 32211 11111111111 1111100001 00 01 267889999999999999999999988 55599999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 020541 279 SITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 279 ~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
+..+..++|+..-..+...-+.+
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~ 243 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDST 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999988888766533
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.66 E-value=1.6e-14 Score=132.75 Aligned_cols=241 Identities=19% Similarity=0.216 Sum_probs=159.5
Q ss_pred HHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHcChhHHHHHHHHH
Q 020541 47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAFGGAGRALLQVCI 124 (325)
Q Consensus 47 ~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~G~~~~~~~~~~~ 124 (325)
...+.++.+|+|+|+||......|.+.+++++++++.+++++++.+.|..... +..++.+++++.+||+++.+.++.+
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999988765 4578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHH
Q 020541 125 VVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLA 204 (325)
Q Consensus 125 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 204 (325)
++..+..+.+|.....+.+.+.+.+. .+.... .|.....++ .+++..+.... -+.+.+++.+-+..-
T Consensus 105 ff~ly~ll~aY~~~itn~l~sfl~~q----------l~~~~~-~r~l~slif-v~~l~~iv~~G-~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 105 FFAICPLLWIYGVTITNTFMTFWENQ----------LGFAPL-NRGFVALFL-LLLMAFVIWFG-KDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------cCcCCc-cHHHHHHHH-HHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 99999999999977777664432211 111001 232222222 22222222222 233333333222111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCC--CccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhh----cC-----C--Ccc
Q 020541 205 IVFVVITAGVAIVKTIDGSISMPCL--LPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE----LK-----D--PTQ 271 (325)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----m~-----~--p~~ 271 (325)
+..++......+.+.........+. .|+.........+..++|+.++||..|+.+|+.... .+ | ++|
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 1111111111111111011111010 011111111134678899999999999999999777 53 3 458
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541 272 IKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (325)
Q Consensus 272 ~~~~~~~~~~~~~~~y~~~g~~gy~~fG~ 300 (325)
.+|++..+..+..++|+..-+.+-..-++
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~ 280 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSP 280 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 88999999999999999999988887763
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.66 E-value=1.6e-14 Score=133.32 Aligned_cols=238 Identities=20% Similarity=0.189 Sum_probs=164.6
Q ss_pred HHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHcChhHHHHHHHH
Q 020541 46 AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAFGGAGRALLQVC 123 (325)
Q Consensus 46 ~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~G~~~~~~~~~~ 123 (325)
=.+.+.++++|+|+|++|....+.||+..++..+++..+.+++.+++.|..... +..++.+++++.+||+++++.++.
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence 467889999999999999998899999999999999999999999999986544 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHH
Q 020541 124 IVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGL 203 (325)
Q Consensus 124 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~ 203 (325)
.+++.+..+.+|....++.+.+.+.+. ...+ -+.+. ...++ +++.+-.......+.+.+++.+.+..
T Consensus 88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~----------~~~~-~p~~~-i~~li-lv~il~~iv~~G~~~i~r~~~il~~~ 154 (397)
T TIGR00814 88 YFFAIYPILLIYSVAITNDSASFLVNQ----------LGTA-PPLRG-LLSLA-LILILVAIMSFGEKLLFKIMGPLVFP 154 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCC-CcHHH-HHHHH-HHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 999999999999988888775444321 1100 01121 11111 11222223334555556665555432
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHH----hhcCC----CcchhHH
Q 020541 204 AIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIE----NELKD----PTQIKSI 275 (325)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~----~~m~~----p~~~~~~ 275 (325)
.+..+.......+. +.+.++-...|... ..+.++..+++..++||.+|+.+|+.. ++.+| ++|.+|+
T Consensus 155 ~ii~l~~l~~~lip---~~~~~~L~~~p~~~--~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~ 229 (397)
T TIGR00814 155 LVLILVLLSLYLIP---HWNGANLTTFPSFN--GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRI 229 (397)
T ss_pred HHHHHHHHHHHHHH---HcCHHHHhcCCccc--chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHH
Confidence 22222222222111 11111111122111 234678899999999999999999997 34442 3488899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 276 VRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 276 ~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
+..+..+..++|+..-+.+....+++
T Consensus 230 i~~~~~i~~~~y~~~~~s~~~~l~~~ 255 (397)
T TIGR00814 230 MKGASLILVATVMFFVFSCVLSLSPA 255 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 99999999999999999999888754
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.62 E-value=5.8e-14 Score=129.18 Aligned_cols=239 Identities=17% Similarity=0.257 Sum_probs=168.8
Q ss_pred CCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 020541 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (325)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (325)
++.|.+|.++.++++++|+|++.+|....+.+-..+++..++.+++......++.+..++.+..+..+..++++||+.++
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 46789999999999999999999998877755557888889999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHH
Q 020541 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (325)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~ 198 (325)
++.+...++............++.+...+ -+ ..+.....+.+++..-....+.++...+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYL--------------LP----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cC----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99999888877776666666666652211 11 1111122222222333334566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhh-hhhhhhhhhhchhHHHhhcCCCcchhHHHH
Q 020541 199 LSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFP-VLVTAYICHHNIHPIENELKDPTQIKSIVR 277 (325)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-i~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 277 (325)
+...+.+...++ ...... ....+..+..|-.+ .++.+...+.- ...++|.+.........+++||+|.+|+..
T Consensus 143 i~~~~~i~~~~~--il~~~~--~~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~ 216 (359)
T TIGR00912 143 ILLIIFLILFIL--VLILLA--PKLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSII 216 (359)
T ss_pred HHHHHHHHHHHH--HHHHHh--cccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHH
Confidence 665433222111 111111 11111222334332 23344444443 778999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 278 TSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 278 ~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
.+..++.++|....+.....+|.+
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHH
Confidence 999999999999999999999854
No 17
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.52 E-value=2.7e-12 Score=116.23 Aligned_cols=236 Identities=13% Similarity=0.167 Sum_probs=177.6
Q ss_pred CCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHH
Q 020541 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL 119 (325)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 119 (325)
|.|..|....+..+++|+|++.+|....+.+- .|++..++.+........+..+..++.+.++..|..++.+|||.+++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 57899999999999999999999988766552 77888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHH
Q 020541 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (325)
Q Consensus 120 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~ 199 (325)
+.+...++.+......+...++.+...+ ....+........+++.-....+.++.+.+.+.+
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~------------------lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYL------------------LPETPIWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999888888888888774321 1112222233333344445567788888886665
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcchhHHHHHH
Q 020541 200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTS 279 (325)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 279 (325)
.....++..+..... . ..+.+..+..|-.+ .++.++..+.....+.|.+......+...+++|+|.+|....+
T Consensus 142 ~~~~~~i~~~~i~~~---~--~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILLL---S--IPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHH---h--cccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 553333322222211 1 12233334445332 4556777777778888988888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 020541 280 ITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 280 ~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
...+.++|...-+.....||.+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999965
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.50 E-value=1.1e-11 Score=117.19 Aligned_cols=242 Identities=14% Similarity=0.106 Sum_probs=150.4
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~ 115 (325)
++|+.+.++.+...+++++|+|++.+|..+.+.|- .+++..++++++.........|...+. +....-..+++.+||+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 57889999999999999999999999988888775 567778888888888888888877654 3334456678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..++..+...+.......++.....+++...++. . .+.....+....++.++-....+..+...+
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------------~-~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------------T-LSPVQICLATIGVLWLCTVANFGGARITGQ 147 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------c-cchHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999887766655555444444555333221 0 000111111111111111112223333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS 274 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~ 274 (325)
+..+.....+..+++.+...... .+.+...+...|. ..+.+.++..++....|+|.|.+......+|+|||+ +.||
T Consensus 148 i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr 224 (438)
T PRK10655 148 ISSVTVWGVIIPVVGLSIIGWFW-FSPSLYVAAWNPH--HLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI 224 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCcccccCCcCcc--CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH
Confidence 33333322222112212111121 1211111111111 112234567778888999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 020541 275 IVRTSITLCSTVYITTSFFGLLL 297 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~~ 297 (325)
++..+..+..++|++........
T Consensus 225 Ai~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 225 AVLGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999887665543
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.47 E-value=1.6e-11 Score=115.90 Aligned_cols=242 Identities=13% Similarity=0.053 Sum_probs=149.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~~ 115 (325)
++|+.+.++.+...+++++|+|++.+|...++.|-. .++..+++++.......+..|...+.+. ...-+.+++ +||+
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 789999999999999999999999999888887753 5667777777777778888888776643 343344566 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..+...+...+..+....++.....+++...++.. ..+ . ....+. +.++.++-+...+..+...+
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----------~~~-~--~~~~~~-~~i~~~~~~ln~~gvk~~~~ 145 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----------NDP-I--PAGIAC-IAIVWVFTFVNMLGGTWVSR 145 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CCh-H--HHHHHH-HHHHHHHHHHHHHhHHHHHH
Confidence 99999887776555445555455555554333211 000 0 011111 11111111122233333444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS 274 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~ 274 (325)
+..+..++.++.++..+...+.. .+.....++..+ ....++.++..++....|+|.|.+.+....+|+|||+ +.||
T Consensus 146 i~~i~~~~~li~~~~~~i~g~~~-~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr 222 (435)
T PRK10435 146 LTTIGLVLVLIPVVGTAIVGWHW-FDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL 222 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH
Confidence 43333322111111111111111 111100011111 1113456788889999999999999999999999997 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 020541 275 IVRTSITLCSTVYITTSFFGLLLF 298 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~~f 298 (325)
++..+..++.++|++..+......
T Consensus 223 Ai~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 223 ATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988765444
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=99.42 E-value=6e-11 Score=112.60 Aligned_cols=242 Identities=12% Similarity=0.054 Sum_probs=151.8
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~ 114 (325)
-+|+.+.++..+..++.++|+|++..| .+.+++|- ..++..++.+++.......+.|...+.+ ..+.-..+++.+|+
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 568899999999999999999999998 66667775 4777888889999999999999887763 44677788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..+++++...+.............+..+...+++ . ....+.+. +++++-....+..+..+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~--~~~~~~~~-~~~l~~~lN~~gv~~~~ 158 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----------------V--PTWIWAAA-FFIIINAVNLVNVRLYG 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----------------C--cHHHHHHH-HHHHHHHHHHhcchhhh
Confidence 99999999888776655555555555555322210 0 01111111 11111112222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCC-C--CC-CCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCC
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSI-S--MP-CLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP 269 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p 269 (325)
++..+....-+..+++.++..+.....+.. + .. +.+++.. ...++.++..++....|+|.|.+.+....+|+|||
T Consensus 159 ~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P 238 (458)
T PRK10249 159 ETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP 238 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH
Confidence 333222211111111111111111111110 0 00 1111000 01345567888999999999999999999999999
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541 270 T-QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (325)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~y~~~g~~gy~~f 298 (325)
+ +.||++..+.....++|+..........
T Consensus 239 ~k~iPrai~~~~~~~~~~y~~~~~~~~~~~ 268 (458)
T PRK10249 239 EKSIPKAVNQVVYRILLFYIGSLVVLLALY 268 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 9 7899999999999999987655544433
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.42 E-value=8.7e-11 Score=112.02 Aligned_cols=248 Identities=10% Similarity=0.067 Sum_probs=153.0
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELG-LIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G-~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~~y~~l~~~~~G 113 (325)
++|+.|.+++++..+++++|+|++.+|....+.| -...++..++.++..........|...+.++ ...-+..++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 4678999999999999999999999997776544 3334566777777777778888888877655 334456799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
|+..++.++...+........+.....+.+...++.. ... .........+.+++++-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-----------~~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-----------GSG--NPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------cCC--CcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999998877666556666655555554443310 000 001111111111111222233344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc--cchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcc
Q 020541 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEI--SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ 271 (325)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~ 271 (325)
.++..+...+.+..+++.+...+.. .+.+....+..+.. .....+..+..++....++|.|.+......+|+||+++
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 4444444322222211211111111 12111000111110 00123456777888899999999999999999999559
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541 272 IKSIVRTSITLCSTVYITTSFFGLLLF 298 (325)
Q Consensus 272 ~~~~~~~~~~~~~~~y~~~g~~gy~~f 298 (325)
.||++..+..++.++|++.........
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999998887655433
No 22
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.42 E-value=1.2e-10 Score=111.06 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=147.4
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~ 114 (325)
-+|+.+.++.....++.++|+|++..| .+.+.+|-...++..++.+++.......+.|...+.+ ...+-..+++.+||
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 578899999999999999999999888 5667778544577788888888888888888877653 34566778899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..+++++...+.....+.......+..+....++ . .......++. +++. +...+..+...
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~----~~~~~~~~~~-~~~~-~in~~gvk~~~ 152 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-------------V----PVWPWCLLFC-ALIF-GLNVVSTRFFA 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------C----cHHHHHHHHH-HHHH-HHHHHhHHHHH
Confidence 99999999888776655544444444333211110 0 0111111111 1111 11222233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCCCCCCcccc--c--hhhhhhhhhhhhhhhhhhhhhhchhHHHhhc
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTID----GSISMPCLLPEIS--K--QASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~--~--~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m 266 (325)
+...+...+-++.++..+...+..... .+........++. . .....++..++....|+|.|.+.+....+|+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 322222111111111111111111110 0000000000111 0 1123456777788899999999999999999
Q ss_pred CCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 267 ~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
|||+ +.||++..+......+|++..+......+
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999 78999999999999999998776554444
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.41 E-value=1.1e-10 Score=110.43 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=145.4
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~~ 115 (325)
++|+.+.++++...++.++|+|++.+|....+.|. ..+...++.++........+.|.....+. ...-.-+++.+||+
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 67899999999999999999999999987777663 34555666666666677777887766533 23334478899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..++.++...+.......+......+++...++. ....+ .. .+....++.++-.......+...+
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~-~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----------LKDPL---VL-TITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCcH---HH-HHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999998877765544444443444444222211 00010 01 111111111111112223333444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS 274 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~ 274 (325)
+..+...+.++.+++.+...+.. .+++...+. ++ ......+..+..++....|+|.|.+......+|+|||+ +.||
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr 226 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFW-FRGETYMAA-WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCchhccCC-cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH
Confidence 43333322222111111111111 121110111 11 11122345666778888999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 020541 275 IVRTSITLCSTVYITTSFFGLLLF 298 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~~f 298 (325)
++..+..+.+++|++..+.....-
T Consensus 227 ai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 227 ATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988755444
No 24
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.41 E-value=8.6e-11 Score=111.46 Aligned_cols=241 Identities=13% Similarity=0.124 Sum_probs=154.5
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (325)
.+|+.+.++..+..+++++|+|++..| .+.+.+|- .+++..++.+++......++.|...+. ...+.-+.+++.+||
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~ 88 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGR 88 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 679999999999999999999999999 77878885 467788888888888899999988765 345677889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..++.++...+.....+.+.....++.+...+++ . .......++ +.+.-.......+...
T Consensus 89 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~-~~~~~~~~~--~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 89 WAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----------------I-PLWLFSLIL--TIVLTLTNLYSVKSYG 149 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------C-cHHHHHHHH--HHHHHHHHHHhcchhh
Confidence 99999999998887777776666666666332211 0 111111111 1111111222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCC---CCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTID--GSISM---PCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 268 (325)
++..+..++.++.+++.++..+..... ...+. .+..+... ...++.++..++....|+|.|.+......+|+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 333322211111111111111111111 11000 01111000 0123456888899999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020541 269 PT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (325)
Q Consensus 269 p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~ 297 (325)
|+ +.||++..+......+|++........
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 98 799999988888899998865544433
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.41 E-value=8.7e-11 Score=111.88 Aligned_cols=239 Identities=11% Similarity=0.089 Sum_probs=145.8
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (325)
-+|+.+.++.....+++++|+|++..| .+.+++|. ..++..++++++.......+.|..... ...++.+.+++.+||
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~ 96 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP 96 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence 678899999999999999999999988 78888887 456677777887777777888876543 334567889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
...+++++...+.......+.....+..+...+++ . .......++ . +.+-+......+...
T Consensus 97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~----------------~-~~~~~~~~~-~-~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD----------------L-SDWVASLAV-V-LLLLSLNLATVKMFG 157 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------C-cHHHHHHHH-H-HHHHHHHHHhHHHHH
Confidence 99999999998876544445555555554222211 0 111111111 1 111111122333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC----CCC---CCCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhc
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDG----SIS---MPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m 266 (325)
++..+...+-+..+++.++..+.....+ +.. ..+.+++... ...+.++..++....|+|.|.+.+....+|+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 3333322221111222121111111110 000 0011110000 1234568889999999999999999999999
Q ss_pred CCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 267 ~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
|||+ +.||++..+.....+.|++......
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999 6899998777777888876666544
No 26
>PRK10836 lysine transporter; Provisional
Probab=99.41 E-value=2e-10 Score=109.99 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=144.9
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~ 114 (325)
.+|+.+.++..+..+++++|+|++..| .+.+++|-...++..++++++....+..+.|...+.+ ....-..+++.+|+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~ 92 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEE 92 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcCh
Confidence 678899999999999999999999999 6777888655688889999999999999999887764 44566677889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGD-VLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
...+++++...+..... .+......+ .+...+ ... .........+.++..+-+.-.|..+..
T Consensus 93 ~~gf~~Gw~~~~~~~~~-~a~~~~a~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~lN~~gv~~~~~~ 155 (489)
T PRK10836 93 GFGFALGWNYWYNWAVT-IAVDLVAAQLVMSWWF--------------PDT--PGWIWSALFLGVIFLLNYISVRGFGEA 155 (489)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcC--------------CCC--chHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 99999988877643332 222222222 221111 100 000011111111112222222323333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCC-CCCc-cccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMP-CLLP-EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (325)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~p-~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~ 270 (325)
.....+..+..++.+++..........++.. ... +..+ .......+..+........|+|.|.+.+....+|+|||+
T Consensus 156 ~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~ 235 (489)
T PRK10836 156 EYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH
Confidence 3222222211111111111111111111110 000 1100 000012334455555666799999999999999999998
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 271 -QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 271 -~~~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
+.||++..++....++|++.........+
T Consensus 236 r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 236 KNIPRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 78999999999999999998776555443
No 27
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.40 E-value=8.3e-11 Score=113.01 Aligned_cols=248 Identities=15% Similarity=0.157 Sum_probs=145.4
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHH-HHHhhChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLI-PGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~-~f~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G 113 (325)
.+|+.+.++.+...++.++|+|++..|. +.+++|-. ..++..++++++......+..|.....+. ...-.-.++.+|
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g 119 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFG 119 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhC
Confidence 5788999999999999999999999994 55666743 22345567777777778888888776543 244445577899
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-cccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 114 GAGRALLQVCIVVN-NLGMLVVYMIIIGDVLS-GAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 114 ~~~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
|+..++..+...+. ..+.+..+....++++. ..+++ + ....+... .+.+. +++++-+......+
T Consensus 120 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----------~-~~~~~~~~--~i~~~-~i~~~~~ln~~Gvk 185 (501)
T TIGR00911 120 PLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----------C-EVPEWAIR--LVAVL-CVLLLTLVNCLSVK 185 (501)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------C-CCchHHHH--HHHHH-HHHHHHHHHHhhhH
Confidence 99988887765442 22333444444454431 11111 0 00001011 11111 11111112223344
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~ 270 (325)
...++..+...+.+..+++.++..++....+.....+....+.. .++..++..++....|+|.|...+....+|+|||+
T Consensus 186 ~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~ 265 (501)
T TIGR00911 186 WATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch
Confidence 44444444433333222222222233222221111000000111 12345677888999999999999999999999998
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541 271 -QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (325)
Q Consensus 271 -~~~~~~~~~~~~~~~~y~~~g~~gy~~f 298 (325)
+.||++..+..++.++|++..+......
T Consensus 266 r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 266 RTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999876654444
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.39 E-value=1.5e-10 Score=110.22 Aligned_cols=247 Identities=11% Similarity=0.086 Sum_probs=151.0
Q ss_pred CCCcHHHHHHHHHHHhHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CHHHHHHHHcChh
Q 020541 39 DGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-A-TYSGVVADAFGGA 115 (325)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~-~y~~l~~~~~G~~ 115 (325)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++.......+..|...+.++ . ..-+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 57899999999999999999999996544 5564444566777788888888888888877654 2 4566689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..++.++...+........+.....+.+...++.. ... ...........++..+-....+..+...+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----------~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF-----------GGG--NNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999887765555556555544443222210 000 01111111111111112222334444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc----cccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcc
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP----EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ 271 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~ 271 (325)
+..+.....+..+++.+...+.. .++....++.++ .......+.++..++....|+|.|.+......+|.|||++
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ 226 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence 44443322222222212111111 111110001010 0111123345667788899999999999999999999889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 272 IKSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 272 ~~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
.+|++..+....+.+|++..+..+...+
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999887765544
No 29
>TIGR00909 2A0306 amino acid transporter.
Probab=99.39 E-value=5.9e-11 Score=111.84 Aligned_cols=248 Identities=12% Similarity=0.093 Sum_probs=158.2
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcChh
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGGA 115 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~~ 115 (325)
+|+.+.++.++..+++++|+|++.+|.... ..|. .+++..++.++.......+..|..++.+. .+.-+..++.+||+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 578899999999999999999999995544 4454 45666777788887888888888876643 34556678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..++.++...+.....+..+....++.+...++.... .. +.+.....+....+.+..+.+++++-+...+..+...+
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGL--DL-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cC-chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9999999998888777888888888877655542100 00 11000000000111111111112222223345555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS 274 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~ 274 (325)
+..+...+.+..+++.+....... + .+ +..|..+ .++.++..++...+++|.+.+......+|+|||+ +.+|
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~-~--~~--~~~~~~~--~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ 230 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHF-A--SN--NYTPFMP--MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK 230 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhC-c--HH--hcCCCCC--CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence 555554333333222222222211 1 11 1111111 2345677888899999999999999999999997 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020541 275 IVRTSITLCSTVYITTSFFGLL 296 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~ 296 (325)
++..+..+..++|++.......
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876654
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.38 E-value=1.4e-10 Score=110.08 Aligned_cols=235 Identities=10% Similarity=0.054 Sum_probs=148.8
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (325)
.+|+.+.++..+..++.++|+|++..| .+.+++|- ..++..++++++.......+.|...+. ...++-..+++.+||
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 689999999999999999999999999 66667775 567778888888888888888887765 344666678889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..++.++...+.......+.....++.++...++ . .+.....+.. .+.-.......+...
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~----~~~~~~~i~~--~~~~~lN~~gv~~~~ 149 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------I----PTWVSAAVFF--VVINAINLTNVKVFG 149 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C----cHHHHHHHHH--HHHHHHHHHhHHHHH
Confidence 99999999999988877777777777766332211 0 0111111111 111111122233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCC-CC---CCCCCc--cccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGS-IS---MPCLLP--EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~p--~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 268 (325)
++..+...+.+..+++.++..+.....+. .+ ..+.++ .+. ...+.++..++....|+|.|.+......+|+||
T Consensus 150 ~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~kn 228 (456)
T PRK10238 150 EMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEADN 228 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 33333222222211111111111111110 00 011111 111 123446667788899999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHH
Q 020541 269 PT-QIKSIVRTSITLCSTVYITTSF 292 (325)
Q Consensus 269 p~-~~~~~~~~~~~~~~~~y~~~g~ 292 (325)
|+ +.||++..+.....+.|+..-.
T Consensus 229 P~r~iPrAi~~~~~~i~~~y~~~~~ 253 (456)
T PRK10238 229 PEQSIPKATNQVIYRILIFYIGSLA 253 (456)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 7899998888888888766543
No 31
>PRK15049 L-asparagine permease; Provisional
Probab=99.37 E-value=2.5e-10 Score=109.37 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=145.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~ 114 (325)
-+|+.+.++..+..++.++|+|++..| .+.+.+|- .+++..++++++.......+.|.....+ ..+.-..+++.+||
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 568899999999999999999999998 57777785 4577788888888888889999877663 45677778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..+++++...+.............+..+. ..+ . +.. ...+...+.. ++++-.......+...
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~-~~~----------~-~~~----~~~~~~~~~~-~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMH-YWG----------A-FGG----VPQWVFALAA-LTIVGTMNMIGVKWFA 167 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc----------c-CCC----CcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999998887654333332323333221 000 0 000 0111111111 1111111222233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-----Ccc-ccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCL-----LPE-ISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~-~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~ 267 (325)
++..+...+-+..++..++..+.....+...+... ..+ ... ...+..++.++...+|+|.|...+....+|+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 33332221111111111111111111111100000 000 000 12334455666778999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 268 ~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
||+ +.||++..++....++|+..........+
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 999 69999999999999999887776555443
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.37 E-value=2.7e-11 Score=122.92 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=156.5
Q ss_pred CCCCCcHHHHHHHH-HHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C-CCCHHHHHHHH
Q 020541 37 GIDGASFSGAVFNL-STTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--K-SATYSGVVADA 111 (325)
Q Consensus 37 ~~~~~s~~~~~~~l-~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~-~~~y~~l~~~~ 111 (325)
+.++.+.+++++.. +..++|+|++.-| +...++|...+++..+++++++..++..+.+...+. + ...| .+.++.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y-~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAY-YLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHH
Confidence 45788999999999 9999999988555 888899988889999999999999999999988862 2 2344 455888
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
+|+.....+++...+.+...+..|.+.+++++..+++..... + ........+ .+.. +.++++..+ .....+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~----~~~~~~~~~-iia~-i~l~ll~~I-n~~Gvk 223 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--I----MVDPINDIR-IYGT-VTVVVLLGI-SFAGME 223 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--c----ccCccccch-HHHH-HHHHHHHHH-HHhhHH
Confidence 999999999999999888889999999999887666421100 0 000000112 1111 111122112 122333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------------CCCCccccchhhhhhhhhhhhhhhhhhhhhhc
Q 020541 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM-------------PCLLPEISKQASFWKLFTTFPVLVTAYICHHN 258 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~ 258 (325)
...++..+.. ++.++.++.+.+..+....... .+..|.+.. ...+++..++++..||.|...
T Consensus 224 ~~ak~q~vl~---vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~--~~~~f~~~~ai~F~A~tGi~a 298 (953)
T TIGR00930 224 WENKAQVLFL---VIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPG--PEGGFFSLFGIFFPSVTGILA 298 (953)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCC--cccHHHHHHHHHHHHHHHHHH
Confidence 3333333332 2111111111111011100000 011111111 111266777888889999999
Q ss_pred hhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541 259 IHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 259 ~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
...+..|+|||+ ..|+++..++.+++++|+++.+...
T Consensus 299 gan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 299 GANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8999999999999999999976433
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.35 E-value=3.7e-10 Score=107.91 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=151.2
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC-CHHHHHHHHcCh
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SA-TYSGVVADAFGG 114 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~-~y~~l~~~~~G~ 114 (325)
+|+.+.++.....++.++|+|++..| .+.+.+|-...++..++.+++.......+.|.....+ .. .|...+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 46789999999999999999999888 7777777544466788888888888888999888775 33 688899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..+++++...+.....+.+.....+..+....++ .....+..... +++-+...+..+...
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~in~~gv~~~~ 141 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK----------------VNPAVWIAIFY---VFIVIINLFGVKGYG 141 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------------CCHHHHHHHHH---HHHHHHHHhcchHHH
Confidence 99999999998887777777776666665322110 00111111111 111111223333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----CC---Cccccch---hhhhhhhhhhhhhhhhhhhhhchhHHHh
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMP----CL---LPEISKQ---ASFWKLFTTFPVLVTAYICHHNIHPIEN 264 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~p~~~~~---~~~~~~~~~~~i~~faf~~~~~~~~i~~ 264 (325)
++..+...+-+..++..++..+.....+..... .. .+.+.+. ..+.++..++....|+|.|.+......+
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 333332211111111111111111111110000 00 0011111 1256778888889999999999999999
Q ss_pred hcCCCc-chhHHHHHHHHHHHHHHHHHHHH
Q 020541 265 ELKDPT-QIKSIVRTSITLCSTVYITTSFF 293 (325)
Q Consensus 265 ~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~ 293 (325)
|+|||+ +.||++..+..+..++|++..+.
T Consensus 222 E~knP~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 222 EAANPRKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 78999999999999999997654
No 34
>PRK11021 putative transporter; Provisional
Probab=99.34 E-value=4.2e-10 Score=105.42 Aligned_cols=227 Identities=19% Similarity=0.187 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHH
Q 020541 42 SFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRAL 119 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~ 119 (325)
+.++++...+++++|+|++.+| .+.+.+|- .+++..++.+++.........|...+.+ ....-...++.+||+..++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 6899999999999999999999 55556664 5677788888888888888888887653 3455567788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHH
Q 020541 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (325)
Q Consensus 120 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~ 199 (325)
.++...+.......+......+.+...++. ..+ ....+.+... .++-+...+..+...++..+
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~-~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGW--------------SSW--QLLLAELLTL-ALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--------------CCc--hHHHHHHHHH-HHHHHHHHhhHHHHHHHHHH
Confidence 998887654333333333344444322211 000 1111111111 11111222333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHH
Q 020541 200 SVGLAIVFVVITAGVAIVKTIDGSISMPC-LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVR 277 (325)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~ 277 (325)
.. ++.+.+ +.. ... .+..+..+ ..++. ...++.++..++....|+|.|.+......+|+|||+ +.||++.
T Consensus 144 ~~---~~~~~i-~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~ 215 (410)
T PRK11021 144 IA---LLIVAL-VVA-IWW--AGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALM 215 (410)
T ss_pred HH---HHHHHH-HHH-HHH--HcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHH
Confidence 22 211111 111 111 11111111 11111 113556788889999999999999999999999998 7999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020541 278 TSITLCSTVYITTSFFG 294 (325)
Q Consensus 278 ~~~~~~~~~y~~~g~~g 294 (325)
.+..++.++|++..+..
T Consensus 216 ~~~~~~~~lYil~~~~~ 232 (410)
T PRK11021 216 IGLLLAGLVYWACTVVV 232 (410)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987653
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.34 E-value=2.2e-10 Score=110.95 Aligned_cols=255 Identities=12% Similarity=0.046 Sum_probs=153.9
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHH-H-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPAT-V-KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~-f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G 113 (325)
-+|+.+.++.+...++.++|+|++.+|-. . ..+|-. .++..++.++.+...+.+..|...+.+.. +.-.-.++.+|
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 57889999999999999999999999943 3 346743 56667788888888888888887765332 22223467799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhh--hcccccch-hHHHHHHHHHHHhhcccccccc
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEW--FGQHWWTT-RFTLLLLTTLFVFLPLISFRRV 190 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~~i~~pl~~~~~l 190 (325)
+...+++++..++.......+.....++++..++..... ...... ........ ......++ ++++-....+..
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~--~~~~~~~~~~~~~l~~~~~~~a~~i--i~l~~~ln~~Gi 180 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIG--QFRRTYFKLNYDGLAEYPDFFAVCL--ILLLAVLLSFGV 180 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccccCCcccccchHHHHHH--HHHHHHHHHhch
Confidence 999999999998877766666555556555444321000 000000 00000001 11111111 112222233455
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541 191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC--LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (325)
Q Consensus 191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 268 (325)
+..+++..+...+.+..+++.++..+......+..... ..+.+. ..++.+++.+.....|+|.|...+....+|+||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn 259 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence 55555555544333332222222222221111110000 000111 123457888889999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020541 269 PT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (325)
Q Consensus 269 p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~ 297 (325)
|+ +.||++..++.+++++|+++.+.-...
T Consensus 260 P~r~iP~aii~sl~i~~vlY~lv~~~l~~~ 289 (557)
T TIGR00906 260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLM 289 (557)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 699999999999999999998765443
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.33 E-value=1e-09 Score=104.23 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=145.7
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~ 114 (325)
.+|+.+.++.++..++.++|+|++.+| .+.+.+|- .+++..++.+++.......+.|...+.+ ..+.-..+++.+||
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~ 85 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP 85 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence 568899999999999999999999999 55666775 4688888888898999999999887664 34555678999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..+++++...+.............+..+...++ ... ......+. +++.-....+..+...
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~--~~l~~~ln~~gv~~~~ 146 (457)
T PRK10580 86 LAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP--------------TVP---HWIWVLSV--VLIICAVNLMSVKVFG 146 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCC---hHHHHHHH--HHHHHHHHHccchhHH
Confidence 9999999988776655444444444544422221 100 11111111 1111112222333333
Q ss_pred hhHHHHHHHHHHHH--HHHHH--HHHHHhccCCCCC--CCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541 195 YTSALSVGLAIVFV--VITAG--VAIVKTIDGSISM--PCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (325)
Q Consensus 195 ~~s~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~--~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~ 267 (325)
++..+...+.+..+ ++.++ +......+...+. .+.+++-.. ..++.++..++....|+|.|.+......+|+|
T Consensus 147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~k 226 (457)
T PRK10580 147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAK 226 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence 33332221111111 11111 1111111110000 011110000 12345677888899999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHHHH
Q 020541 268 DPT-QIKSIVRTSITLCSTVYITTSFFG 294 (325)
Q Consensus 268 ~p~-~~~~~~~~~~~~~~~~y~~~g~~g 294 (325)
||+ +.||++..+.....++|+......
T Consensus 227 nP~k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 227 DPEKSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 589999988888888887775544
No 37
>PRK10746 putative transport protein YifK; Provisional
Probab=99.31 E-value=8.7e-10 Score=104.72 Aligned_cols=244 Identities=13% Similarity=0.096 Sum_probs=151.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (325)
.+|+.+.++..+..+++++|+|++..| .+.+.+|- ..++..++++++.......+.|..... ...++.+.+++.+||
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 578899999999999999999999988 77777886 456777888888888888999987765 345677889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..+++++...+.............+.+++..+++ .........+...+..+-+.-.|....+.
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----------------~~~~~~~~~~~~~~~~lN~~gv~~~~~~e 150 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----------------MAQWIPALIAVALVALANLAAVRLYGEIE 150 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----------------CchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999888876666666666666555322211 00001111111111111111122222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCccc-cchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCC
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISM----PCLLPEI-SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP 269 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~-~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p 269 (325)
.......+..+..++ ++.+.......+...+ .+..++. ....++.++..++....|+|.+.+.+....+|+|||
T Consensus 151 ~~~~~~ki~~i~~~i-i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP 229 (461)
T PRK10746 151 FWFAMIKVTTIIVMI-VIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNP 229 (461)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh
Confidence 221111111111111 1111111111111100 0111100 001245677889999999999999999999999999
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541 270 T-QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (325)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~y~~~g~~gy~~f 298 (325)
+ +.||++..++....++|+..........
T Consensus 230 ~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 230 QVTLRSAVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 8 8899999999999999988655544444
No 38
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.30 E-value=4.6e-11 Score=110.35 Aligned_cols=244 Identities=15% Similarity=0.136 Sum_probs=158.9
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHH-HhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATV-KELG-LIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f-~~~G-~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~ 112 (325)
.+|+.+.+.++..+++.++|+|++..|-.. +++| ...+++..+++++++...+.+-.|..... ...+|..+ .++|
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi-~~af 88 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI-SEAF 88 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-HHHh
Confidence 689999999999999999999999999555 4555 55567778889999999999988877643 33456665 5678
Q ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHhhcc-cccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccccc
Q 020541 113 GGAGRALLQVCIVVNNLGML-VVYMIIIGDV-LSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRV 190 (325)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l 190 (325)
|+...+.....-.+...... ..+.+.++++ +.+.++. +. .+. ..++.... .++.++-+.-.-.+
T Consensus 89 g~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~----------~p~-~~~~lla~--~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 89 GPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CD----------VPR-VASKLLAA--ALLVLLTLINSFSV 154 (479)
T ss_pred ccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CC----------Cch-HHHHHHHH--HHHHHHHHHhhhhh
Confidence 88777777666666655555 7778888887 5544431 11 010 11222211 11122222112223
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCC
Q 020541 191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELKDP 269 (325)
Q Consensus 191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p 269 (325)
+.-.++..+...+-+..+.++++..++....+..++....+ .++ ..+..++..++-...|||.++..+=.+.+|+|||
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 33333333333334444444444555555555444322211 211 1233446677778899999999999999999999
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 020541 270 T-QIKSIVRTSITLCSTVYITTSFFGLL 296 (325)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~y~~~g~~gy~ 296 (325)
+ .+|+++..++.+++++|+++=+..+.
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~ 261 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFT 261 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeE
Confidence 9 88999999999999999998775543
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.25 E-value=2.5e-09 Score=101.30 Aligned_cols=240 Identities=18% Similarity=0.113 Sum_probs=141.3
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHH-HHhhCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPAT-VKELGL-IPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~-f~~~G~-~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~~y~~l~~~~~ 112 (325)
-+|+.+.++.+...++.++|+|++..|.. ....|- ...++..++.+++......+..|.....++ ..| .-.++.+
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y-~y~~~~~ 84 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADY-VYLKNAG 84 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCce-eeHHHhc
Confidence 57889999999999999999999999965 445553 335566777777777788888887765422 123 2346789
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 113 GGAGRALLQVCIVV-NNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 113 G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
||+..++..+.... ........+....++++....+ .... .......+ .++.+-....+..+
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------------~~~~-~~~~~~~~--~~~~~~~ln~~gv~ 147 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------------IDPL-LGKFIAAG--LIIAFMLLHLRSVE 147 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CchH-HHHHHHHH--HHHHHHHHHHhhhh
Confidence 99999888886443 3333344455555555422111 0000 01111111 11111112233334
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-
Q 020541 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~- 270 (325)
...++..+.....+..+++.++..+.....++...+...+ ......+.++..++....|+|.+.+......+|+|||+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 226 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence 3334443333222222222222222211111111111111 01112245677788889999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541 271 QIKSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 271 ~~~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
+.||++..++.+++++|++......
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999999998876543
No 40
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.20 E-value=3.3e-09 Score=100.42 Aligned_cols=237 Identities=13% Similarity=0.047 Sum_probs=146.0
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~ 115 (325)
.+|+.|.++.+...++.++|......+..++++|+..-++..++.++........+.|...+.+ ....-..+++.+||+
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 5788999999999999999844456678888889865556666667777777778888777653 345556779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..++..+...+........+....++++...++.. .......++. .++-+...+..+...+
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-----------------~~~~~~~~~~--~~~~~ln~~g~~~~~~ 145 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-----------------PGWLAALVFY--IVFIGINILGVGEAAK 145 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------chhHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 99999999988877777788888888775443210 0111111111 1111112223333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc--chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~ 272 (325)
+..+...+.++.+++.+... ....+.....+....+.. ....+.+++.++...+++|.+++......+|+|||+ +.
T Consensus 146 i~~~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~i 224 (442)
T TIGR00908 146 LEFVVTAVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDI 224 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 33332211111111111110 000000000000000000 012344677888888999999999999999999998 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 020541 273 KSIVRTSITLCSTVYITTSFF 293 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~ 293 (325)
||++..+..+...+|+.....
T Consensus 225 prai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 225 PRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888876543
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.19 E-value=3.6e-09 Score=99.63 Aligned_cols=238 Identities=16% Similarity=0.149 Sum_probs=151.5
Q ss_pred cHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHH
Q 020541 42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRAL 119 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~~ 119 (325)
|.++.+...++.++|+|++..| .....|.. +++..++.+.+. ........|..++. +....-...++.+||+.+++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 6889999999999999999999 66666654 555555555554 56677777776643 45566677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHH
Q 020541 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (325)
Q Consensus 120 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~ 199 (325)
..+...+........+.....+.+...+.. .+.+ + +.....+.+.. ++..-....+..+..+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~--~~~~~~i~~~~-~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGP---------DLNP-S--PWPQFLIAIIL-ILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---------GGTC-S--HHHHHHHHHHH-HHHHHHHHHTTHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccc---------cccc-c--cchheeeeecc-cccceEeeechhhhhhhhhhh
Confidence 999999998888888888888877444321 1100 0 01111111111 122222233344555555554
Q ss_pred HHHHHH-HHHHHHHHHHHHHhccCCCC-----CCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcchh
Q 020541 200 SVGLAI-VFVVITAGVAIVKTIDGSIS-----MPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIK 273 (325)
Q Consensus 200 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~~~ 273 (325)
...+.+ ..+++.+...++...++..+ .+...|. .+.....++...+|+|.|.+......+|+|| |+.+
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip 220 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIP 220 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc-hhhe
Confidence 443333 22222222233322221111 0111121 2224678889999999999999999999888 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541 274 SIVRTSITLCSTVYITTSFFGLLLFGD 300 (325)
Q Consensus 274 ~~~~~~~~~~~~~y~~~g~~gy~~fG~ 300 (325)
|++.++..++.++|++.........++
T Consensus 221 ~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 221 RAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred eecccchhHHHHHHhhhhheeeecccc
Confidence 999999999999999998887776654
No 42
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.19 E-value=5.1e-10 Score=90.92 Aligned_cols=222 Identities=15% Similarity=0.218 Sum_probs=143.4
Q ss_pred cHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------
Q 020541 42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----------------------- 98 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----------------------- 98 (325)
|-.-....+.|-++|+|.|+||.+|+.+||.+++.++.+.++.+..+....+|+...
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 445567788999999999999999999999999999999999999999888887641
Q ss_pred ----------------------------------cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 020541 99 ----------------------------------SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (325)
Q Consensus 99 ----------------------------------~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 144 (325)
+++.+.++++...|.|.+-.++-++++++++|.+..|...+--+.-
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 1345688999999999999999999999999999999877765554
Q ss_pred cccccCc--cCCCcc-----h----hhhc-ccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHH
Q 020541 145 GAWLNGV--HHSGVT-----E----EWFG-QHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA 212 (325)
Q Consensus 145 ~~~~~~~--~~~~~~-----~----~~~~-~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 212 (325)
++..... ..-|+. + .|-. .......++.+.++.+++.+|+.+. ++++-+++.++.......-....+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchh
Confidence 4322100 000110 0 0111 0001122344556666666677653 555566666655533332222222
Q ss_pred HHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541 213 GVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (325)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~ 270 (325)
...-.+ ...+....+| +...+-++-..++...|+|.+|.+.|.....++.+.
T Consensus 252 ~l~tmq---aeedaa~a~p---~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 252 SLATMQ---AEEDAAAAHP---PARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhh---hcccccccCC---ccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 211111 1111111222 122344555667888999999999999887776554
No 43
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.17 E-value=9.4e-09 Score=93.94 Aligned_cols=236 Identities=15% Similarity=0.167 Sum_probs=157.4
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL-~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (325)
-+|+.+.++--+.-+...||+|.+ .--.+.+.+|-- -++..+++|++...-++.+.|...++ ...++.+.+++.+|+
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~ 89 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGP 89 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcc
Confidence 468889999999999999999965 666888888832 24557888889888899999977765 567999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHH-HHHHHHHhhccccccccchh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL-LLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~~pl~~~~~l~~l 193 (325)
|..++.+....+.-...+.+-+..++.+++ .|+... -++... .....+..+-+...|....+
T Consensus 90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~--------------~WfP~v---P~Wv~al~~~~l~~~~NL~sVk~FGE~ 152 (462)
T COG1113 90 WAGFLTGWTYWFFWVLVGIAELTAIGIYLQ--------------FWFPDV---PQWVFALAAVVLLLAVNLISVKVFGEL 152 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhcCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998884 333211 011111 11111222333445555555
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541 194 RY-TSALSVGLAIVFVVITAGVAIVKTIDGSIS---MPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (325)
Q Consensus 194 ~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 268 (325)
.+ ++.+-+ .+++.+++.-...+...+..+.. -++.+.+-. .++++.+++.++-+.+|||.+.+.+-....|-+|
T Consensus 153 EfWfAlIKV-~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~d 231 (462)
T COG1113 153 EFWFALIKV-AAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKD 231 (462)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Confidence 43 344443 33332222111111111221111 111111000 1246778999999999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHH
Q 020541 269 PT-QIKSIVRTSITLCSTVYITTS 291 (325)
Q Consensus 269 p~-~~~~~~~~~~~~~~~~y~~~g 291 (325)
|+ ..||+.+....=..++|+.-=
T Consensus 232 P~k~ipkAin~V~~RI~iFYvgsl 255 (462)
T COG1113 232 PEKAIPKAINSVIWRILIFYVGSL 255 (462)
T ss_pred hhhHHHHHHhhhhHHHHHHHHHHH
Confidence 99 667887777666666665433
No 44
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.13 E-value=1.4e-08 Score=96.08 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=138.1
Q ss_pred HHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHHHHHHHHHH
Q 020541 50 LSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRALLQVCIVVN 127 (325)
Q Consensus 50 l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~~~ 127 (325)
.+++++|+|++..| .+.+++|. .+++..++.+++......+..|...+.+ ....-..+++.+||+..+++++...+.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 35789999999999 68888886 4788888889999999999999887654 446777889999999999999999887
Q ss_pred HHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHH
Q 020541 128 NLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVF 207 (325)
Q Consensus 128 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 207 (325)
............+..+.. |.+. .....+.+.. ++++-+......+....+..+...+-+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~--------------~~~~----~~~~~~~~~~-l~~~~~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 82 WVLVIPLEANIAAMILHS--------------WVPG----IPIWLFSLVI-TLALTGSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHh--------------cccc----CcHHHHHHHH-HHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 665555444444443311 1110 0111111111 11111111222333333333322211221
Q ss_pred HHHHHHHHHHHhccCCCC--C-C---CCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHH
Q 020541 208 VVITAGVAIVKTIDGSIS--M-P---CLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTS 279 (325)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~--~-~---~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~ 279 (325)
++..+...+.. ..+..+ + . +.++... ....+.++..++....|+|.|.+.+....+|+|||+ +.||++..+
T Consensus 143 li~~ii~~~~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~ 221 (446)
T PRK10197 143 ILAFIFLGAVA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV 221 (446)
T ss_pred HHHHHHHHHHH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHH
Confidence 11111111111 111110 0 0 1111000 013455788999999999999999999999999999 689999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020541 280 ITLCSTVYITTSFFGLL 296 (325)
Q Consensus 280 ~~~~~~~y~~~g~~gy~ 296 (325)
+....++|++..+....
T Consensus 222 ~~~i~i~Yil~~~~~~~ 238 (446)
T PRK10197 222 IWRISIFYLCSIFVVVA 238 (446)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 99999999987766443
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.07 E-value=4.8e-08 Score=92.91 Aligned_cols=249 Identities=15% Similarity=0.128 Sum_probs=156.7
Q ss_pred CCCCCcHHH-HHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~-~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (325)
.+++.+.++ ......+.++|.|++.+|......+ ....+..++.+++.........|...+. +...+-...++.+||
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 88 (466)
T COG0531 10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGP 88 (466)
T ss_pred cCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCc
Confidence 677888888 8899999999999999997777665 2223334555555555567777766644 333566778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+..++..+...+.......+.....++.+...++... .+....+ .... .......++-+.-.+..+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~-~~~~~~~~~~~ln~~G~~~~~ 157 (466)
T COG0531 89 RLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-------LLSIGPL---LIIL-IALALIALLTLLNLRGIKASA 157 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------hhcCCch---HHHH-HHHHHHHHHHHHHHhhHHHHH
Confidence 8889999999999888888888888886655443210 0000000 1111 111111222222233444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~ 272 (325)
+...+...+.++..++............. .. ..+... ....+..+..++....++|.|.+...+..+|+|||+ +.
T Consensus 158 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 158 KINSIITILKIIILLIFIILGLFAFGFSN-GN--LFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc--cCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 44444433333332222222222211111 11 111111 223344688888999999999999999999999997 77
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541 273 KSIVRTSITLCSTVYITTSFFGLLLFGD 300 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~ 300 (325)
||++..+...+.++|++..+......+.
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999999999999988877764
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.95 E-value=1.2e-07 Score=88.64 Aligned_cols=240 Identities=13% Similarity=0.089 Sum_probs=166.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL-~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G~ 114 (325)
-+|+...++..+.-++..||+|++ +.-.++.++|-...++..++.|.+.+..+..+.|.....+.. ++...+.+...+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp 121 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence 458889999999999999999977 777999999998888999999999999999999988877644 499999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
-..+.+++...+.-...+..-+...+..+ ..|.... .+.-.+..+...+++.+-+.-.|......
T Consensus 122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi--------------~yW~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~E 186 (541)
T COG0833 122 AFGFALGWNYWLNWAVTLPLELTAASLVI--------------QYWFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETE 186 (541)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhh--------------hhhcCCC-CChHHHHHHHHHHHHHHHHhcccccceeh
Confidence 99999999999988888888888877766 3443211 11112222222223334445566666554
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCcc-ccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-
Q 020541 195 -YTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLPE-ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (325)
Q Consensus 195 -~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~- 270 (325)
++|.+-++ +++.+++.-++.......... -..+.+.+ -...+.+.++...+-+..|+|.|.+.+--...|-+||+
T Consensus 187 fw~s~iKV~-~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K 265 (541)
T COG0833 187 FWFSSIKVL-TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK 265 (541)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh
Confidence 44555543 333322222222222111100 00111111 01124578888889999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 020541 271 QIKSIVRTSITLCSTVYITTSF 292 (325)
Q Consensus 271 ~~~~~~~~~~~~~~~~y~~~g~ 292 (325)
..||++.-.+.=..++|++.-+
T Consensus 266 ~iPkAik~vfwRIl~FYi~si~ 287 (541)
T COG0833 266 SIPKAIKQVFWRILLFYILSIF 287 (541)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888876544
No 47
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.91 E-value=6.9e-09 Score=99.34 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=169.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchH-HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMAL-PATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~l-P~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~~y~~l~~~~~G 113 (325)
-+|+.+.++..+.-+++++|+|++-. ..+.++.|-..-++..++.+.....+..++.|...+.+. .++...+++..|
T Consensus 28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVG 107 (554)
T ss_pred hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeC
Confidence 57889999999999999999998854 588888887777778888889999999999999888765 467777889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
+...++++.-.++.....+.+-+...+..++.... ....+. ..+..+...+......+++++.+...+-....
T Consensus 108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~-----~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ 180 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGI-----LVDTVNPGGWIPDFLAFILIINLFGVLAYGEV 180 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccc-----cccCCCCCccHHHHHHHHHHHHHHHHhhccce
Confidence 99999999999999998888888888887744320 000000 00000001111122222344444444554555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CC--CCCC--ccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SM--PCLL--PEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (325)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~--p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 268 (325)
++...+..+++.+-+++...+......+.+. ++ .+.+ |.--....+.++...+-+..|+|.|...+-...+|-||
T Consensus 181 ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN 260 (554)
T KOG1286|consen 181 EFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN 260 (554)
T ss_pred eehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 5555544444433333332222222122211 11 0111 10001123778899999999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHHHH
Q 020541 269 PT-QIKSIVRTSITLCSTVYITTSFFG 294 (325)
Q Consensus 269 p~-~~~~~~~~~~~~~~~~y~~~g~~g 294 (325)
|+ ..|++...++...+.+|++..+.-
T Consensus 261 P~k~IP~ai~~s~~ri~~~Yi~~~~~l 287 (554)
T KOG1286|consen 261 PRKAIPKAIKQSLLRILLFYILSSIVL 287 (554)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 98 889999999999999999988754
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.91 E-value=7.7e-07 Score=85.06 Aligned_cols=259 Identities=11% Similarity=-0.030 Sum_probs=142.5
Q ss_pred CCCCCcHHHHHHHHHHHh-HhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTI-VGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~-iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G 113 (325)
-+|+.|.++.+..-++.+ +++|+...+ .+..++|- ..+...++.++........+.|...+.+. ...-.-+++.+|
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g 89 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGG 89 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcC
Confidence 467789999988888875 899999888 66666775 45666777788888888888888777643 344455688899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
|+..++.++...+................+..+.+.... .+..+++..+.. ......+.+.. +++.-+...+..+..
T Consensus 90 ~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~in~~g~k~~ 166 (475)
T TIGR03428 90 EVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI-IGEDPTLTSPSG-AANAVLLGSVL-LVLTTVINCIGVEWM 166 (475)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCccccCCCc-hHHHHHHHHHH-HHHHHHHHHhhhhHH
Confidence 999999998888776544444444333333222110000 000000000000 00111111111 111111222233344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-c
Q 020541 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q 271 (325)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~ 271 (325)
.++..+...+.+..+++.++.......++.. .......... ......+..+.....|+|.|.+....+.+|+|||+ +
T Consensus 167 ~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~ 245 (475)
T TIGR03428 167 SRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGAS-PGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRV 245 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchh
Confidence 4444333322222222222222211111100 0000000000 01123455566667899999999999999999999 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541 272 IKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (325)
Q Consensus 272 ~~~~~~~~~~~~~~~y~~~g~~gy~~fG~ 300 (325)
.||++..+..+..++|.+.-+......++
T Consensus 246 iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 246 APRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 89999999999888777766665554443
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.82 E-value=2.5e-06 Score=82.04 Aligned_cols=247 Identities=11% Similarity=0.130 Sum_probs=129.7
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSRASKS--ATYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~--~~y~~l~~~~~G 113 (325)
.+|+.|.++.+...+++++|.+ .+|.++.+.|.. +++..++.+++. ........|.....+. ..--.-.++++|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 5678999999999999999976 568888888864 444444445443 3456677787766642 455556688899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----hhcccccccccCccCCCcchhhhcccccchh-HHHHHHHHHHHhhcccccc
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMII----IGDVLSGAWLNGVHHSGVTEEWFGQHWWTTR-FTLLLLTTLFVFLPLISFR 188 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~i~~pl~~~~ 188 (325)
|+.+++..+................ ....+ +... ....+.... .+.. ......+..+.++-+...+
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~-~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI---FGKD-----TTQTWHFLG-LNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcc-----hhhhhhhhc-ccchHHHHHHHHHHHHHHHHHHcc
Confidence 9988876655433322211111100 00100 0000 000000000 0111 1111111111122223345
Q ss_pred ccchhhhhHHHHHHHHHHH-HHHHHHHHHHHhccC-CCCCCCCCccc-----cchhhhhhhhhhhhhhhhhhhhhhchhH
Q 020541 189 RVDSLRYTSALSVGLAIVF-VVITAGVAIVKTIDG-SISMPCLLPEI-----SKQASFWKLFTTFPVLVTAYICHHNIHP 261 (325)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~-----~~~~~~~~~~~~~~i~~faf~~~~~~~~ 261 (325)
.++..+++..++..+.+.. +++.+...+.....+ ....+....++ +.+.+..++..++....|+|.|.+....
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555433211111 001111111111111 11111000000 0111123466677778999999999999
Q ss_pred HHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541 262 IENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 262 i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
..+|+|||+ +.||++..+.....++|.+..+...
T Consensus 233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 8999999999999999998755443
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.58 E-value=4.6e-07 Score=86.70 Aligned_cols=238 Identities=14% Similarity=0.170 Sum_probs=144.8
Q ss_pred HHHHhHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHHHHHHHHHH
Q 020541 50 LSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRALLQVCIVVN 127 (325)
Q Consensus 50 l~~~~iG~giL-~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~~~ 127 (325)
-+..++|+|++ ..+.+..++|....++..++.+++...+...+.|..++.+ ..++-..+++.+|+.....+++...+.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~ 85 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS 85 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence 35678999966 5568888888877788889999999999999999887764 346667788999999999999997777
Q ss_pred HHHHHHHHHHHhhcccccc--cccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHH
Q 020541 128 NLGMLVVYMIIIGDVLSGA--WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI 205 (325)
Q Consensus 128 ~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 205 (325)
............+..++.. .++ . + ..|.............+..+.+.-.|...+......... +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~------~-~----~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~---~ 151 (478)
T PF00324_consen 86 YIAAIAAEATAAGSFLQFWGYFPG------L-P----STWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIK---L 151 (478)
T ss_pred HHHHHHhhhhhhhhhhcccccccc------c-c----ccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHh---h
Confidence 7766666666666555322 111 1 0 011000000111111112222222333333322221111 1
Q ss_pred HHHHHHHHHH-HHHhccCCCCCC-------C---CCccc---cchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-
Q 020541 206 VFVVITAGVA-IVKTIDGSISMP-------C---LLPEI---SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (325)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~~-------~---~~p~~---~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~- 270 (325)
+.++..+... +.....+...+. . ..|.- .....+.++..++...+++|.|.+......+|.|||+
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 1111111111 111111111101 0 01100 0112367899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 271 QIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 271 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
+.||+...++....++|++.....-...+.+
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 8899999999999999998888766666644
No 51
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.57 E-value=9.3e-06 Score=77.82 Aligned_cols=253 Identities=8% Similarity=-0.024 Sum_probs=129.9
Q ss_pred CCCCCcHHHHHHHHHHHhHh--hhhch-HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVG--AGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG--~giL~-lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~ 112 (325)
-+|+.+.++.+..-+. .+| .|+.. ++.+..++|-...++..++.+++.......+.|...+.+. .+.-.-+++++
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 4677888888877776 444 56543 4456767776555667888888888888888898776643 34445556666
Q ss_pred C----hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 020541 113 G----GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (325)
Q Consensus 113 G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~ 188 (325)
| +...++++....+.....+.+.....++.+...+... .. . ..+....| ....+. ..++.++-+....
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~---~~~~i~-~~~~~~~~~in~~ 160 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TP-G--REYIPTRW---HIFGIM-IGIHLIHALINSL 160 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-C--CCccccCc---hhhhhH-HHHHHHHHHHHHh
Confidence 5 4556777777766666555555555555443322100 00 0 00111111 111111 1111111111122
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-----CCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHH
Q 020541 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC-----LLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPI 262 (325)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i 262 (325)
..+.+.++..+...+.++.+++.++..... .....+..+ ..++... .+....+..++....|+|.+.+.....
T Consensus 161 g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~ 239 (482)
T TIGR00907 161 PTKWLPRITSSAAYWSLLGFLTICITLLAC-KSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHM 239 (482)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHH
Confidence 223333333332222222222111111111 111111000 0111000 011123455556677999999999999
Q ss_pred HhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 263 ENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 263 ~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
.+|+|||+ +.||++..+..+..+++++..+..+...+
T Consensus 240 a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 240 AEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred HHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 78999999988877665554444444333
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.48 E-value=4.3e-05 Score=73.64 Aligned_cols=234 Identities=13% Similarity=0.094 Sum_probs=117.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH--HHHHHHHHHHHhhc--CCCCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT--ESSIDMIMRFSRAS--KSATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~--~~t~~~l~~~~~~~--~~~~y~~l~~~~~ 112 (325)
+++|.+.++.++..+..++ ++..+| .+++.|+ +.+...+++.+. .-.+.+..|..... +....-.-+++++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~ 76 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTL 76 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhcc
Confidence 4567888888877776665 557888 5677783 444444554444 33566777776542 2334445578999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHH-HHHHHHHhhccccccccc
Q 020541 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL-LLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~~pl~~~~~l~ 191 (325)
|++.+++..+...+................+...+.. +.. .. ...... ..+.++..+-+...+..+
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--------~~~-~~----~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF--------PAL-NE----DPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chh-cc----CcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9998888766666644322222111111111000000 000 00 111111 111111111122233333
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHHHHHHhccCCCCC-C----CCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhh
Q 020541 192 SLRYTSALSVGLAIVF-VVITAGVAIVKTIDGSISM-P----CLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~ 265 (325)
...+++.++.+...+. +++.+.........+.... + ...|++. + .+....+....|+|.|.+......+|
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~---~-~~~~~~~~~~~faf~G~E~~a~~a~E 219 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFS---K-VGTLVVFVAFIGAYMGVEASASHINE 219 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcc---c-ccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 3333333322111111 1111111111112221110 0 1112211 1 12233344458899999999999999
Q ss_pred cCCCc-chhHHHHHHHHHHHHHHHHHHH
Q 020541 266 LKDPT-QIKSIVRTSITLCSTVYITTSF 292 (325)
Q Consensus 266 m~~p~-~~~~~~~~~~~~~~~~y~~~g~ 292 (325)
+|||+ ++||++..++.+..++|.+..+
T Consensus 220 ~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 220 LENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99998 7999999999999999876554
No 53
>PRK11375 allantoin permease; Provisional
Probab=98.40 E-value=0.00019 Score=68.55 Aligned_cols=261 Identities=8% Similarity=-0.014 Sum_probs=125.7
Q ss_pred hhhccCCCCCcHHHHHHHHHHHhHhhhhchHH-HHH-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 020541 32 EAHEAGIDGASFSGAVFNLSTTIVGAGIMALP-ATV-KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVA 109 (325)
Q Consensus 32 ~~~~~~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~ 109 (325)
+.++ ++|+.+.++-+..-....+..+.+.+- ..+ ...++..+++.+++...+...-..+......++ ..++.-+.|
T Consensus 19 pvp~-~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR 96 (484)
T PRK11375 19 PKTQ-SQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILR 96 (484)
T ss_pred cCCc-cccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHH
Confidence 3444 566666666555555444443332111 111 123455555555554444443333333333344 557888999
Q ss_pred HHcChhHHHHHHHHHH-HHHHHHHHHHHHHhhcccccccc----cCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 020541 110 DAFGGAGRALLQVCIV-VNNLGMLVVYMIIIGDVLSGAWL----NGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL 184 (325)
Q Consensus 110 ~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl 184 (325)
..||++|.++..+... +..+|=........++.+..++. ......+-.+ ..+ .+.......++..++..++
T Consensus 97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~-~~g---~~~~~~i~~~i~~~l~~~~ 172 (484)
T PRK11375 97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFT-LLG---LSLPGLITFLIFWLVNVGI 172 (484)
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCC---CcHHHHHHHHHHHHHHHHH
Confidence 9999999888888874 45555445555556665543332 1111000000 011 1122223222222344444
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc--ccchhhhhhhhhhhhhhhhhhh-hhhchhH
Q 020541 185 ISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPE--ISKQASFWKLFTTFPVLVTAYI-CHHNIHP 261 (325)
Q Consensus 185 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~i~~faf~-~~~~~~~ 261 (325)
. ....+.++++..++..+..+.++......+... +..+.....|. .......+.+..++...+-++. ...+.|.
T Consensus 173 ~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D 249 (484)
T PRK11375 173 G-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASD 249 (484)
T ss_pred H-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccc
Confidence 3 345566666666665443333333333333222 11111111111 0011112334444444444444 4458899
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHhcCCC
Q 020541 262 IENELKDPTQIKSIVRTSITLCSTVYITTSFFG----LLLFGDR 301 (325)
Q Consensus 262 i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fG~~ 301 (325)
..+..|++++..+...++..+...+...+|+.. ...||+.
T Consensus 250 ~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~ 293 (484)
T PRK11375 250 FTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGAD 293 (484)
T ss_pred hhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999888666666667766666665445443 4456543
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.39 E-value=6e-05 Score=66.43 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhHhhhhchHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHH
Q 020541 44 SGAVFNLSTTIVGAGIMALP---ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALL 120 (325)
Q Consensus 44 ~~~~~~l~~~~iG~giL~lP---~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 120 (325)
.+-.+..+.+++|+|.=+== .-|..-|+ .|....++++++...++..+.+..++-+..+|.|..++.+||+..++.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHH
Confidence 34556677799999965433 23333454 478888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 020541 121 QVCIVVNNLGMLVVYMIIIGDVLS 144 (325)
Q Consensus 121 ~~~~~~~~~g~~~~y~i~~~~~l~ 144 (325)
|+.+.+++++.+.....-.+..++
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~ 108 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLE 108 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHH
Confidence 999999999998887777776663
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.37 E-value=0.00032 Score=66.49 Aligned_cols=257 Identities=14% Similarity=0.028 Sum_probs=139.9
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (325)
++|+.+.++-+..-....+....+........ .++..+++..++...+...-..+......|+ ..++..+.|..||+
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~-Gl~~~v~sR~~FG~ 88 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY-GLPFPVLSRASFGI 88 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh-CCCcchhhhhhhhh
Confidence 45555777776666666666555555544333 4566666666665555554455555555555 44666788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+|.++..++..+...|=...-....++.+..++....... ...+++ .+.......++...+.+++......+...
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~----~~~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~~~~~ 163 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGY----LHLGNG-MTTLELICFIIFWALVLVFLFFFGYKIRH 163 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc----cccCCc-ccHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999999999988888888888877765553210000 000000 01122222222223444433333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhh-hhhhhchhHHHhhcCCCcchh
Q 020541 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQIK 273 (325)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~fa-f~~~~~~~~i~~~m~~p~~~~ 273 (325)
+....+....... +....+...+. .+..+.....+..........+..++...+-. -..-.+.+...+.+|+|++-.
T Consensus 164 ~~~~~a~~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~ 241 (442)
T TIGR00800 164 LFEWLAVVPPFAA-FGMLIWALSKA-HGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHc-CCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchH
Confidence 3444443221111 11111111111 11111011111111112334455555553322 335568889999999988767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Q 020541 274 SIVRTSITLCSTVYITTSFFGLLL----FGDR 301 (325)
Q Consensus 274 ~~~~~~~~~~~~~y~~~g~~gy~~----fG~~ 301 (325)
+...+++.........+|+.+-.. +|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 242 WGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 778888888888888888888776 7754
No 56
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.28 E-value=0.00026 Score=67.76 Aligned_cols=52 Identities=4% Similarity=0.027 Sum_probs=45.1
Q ss_pred hhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 248 VLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 248 i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
...++|.|.+......+|+|||+ +.||++..+..+..++|++..+.....-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35789999999999999999998 79999999999999999987776555444
No 57
>PRK12488 acetate permease; Provisional
Probab=97.82 E-value=0.012 Score=57.26 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=94.4
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHcC-
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASKSATYSGVVADAFG- 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~y~~l~~~~~G- 113 (325)
-.|+.+++...+.+..+.++++ .+..|-...+.|+.. ....+ ...+.. .....+.+-.++.+..|..|..++-||
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s 142 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQ 142 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCC
Confidence 3678899999999999988886 678996666777542 21111 111111 112345555677788999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
|+.|.+..+..++..+.-....+...+..++.++ +-+ .+ ...++..+++........++..
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------------gi~----~~-~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------------GIS----YL-YAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCC----HH-HHHHHHHHHHHHHHhccchhHH
Confidence 5688888887777776666666666666664332 111 11 1222333456666777788888
Q ss_pred hhhHHHHHHHH
Q 020541 194 RYTSALSVGLA 204 (325)
Q Consensus 194 ~~~s~~~~~~~ 204 (325)
.+...+-.++.
T Consensus 204 ~~td~iQ~~im 214 (549)
T PRK12488 204 TWVQIIKAVLL 214 (549)
T ss_pred HHHHHHHHHHH
Confidence 88888776433
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.80 E-value=0.013 Score=55.96 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=93.3
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHH--HHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIV--LVGWL-TESSIDMIMRFSRASKSATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~--~~~~~-~~~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (325)
-.|+.+.+...+.+..+.+|++ .+..|-...+-|+........ ..+.+ ...-...+.+..++.+..|..|..++.|
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ry 117 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARY 117 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHc
Confidence 3578899999999999999986 668886666667531111100 11111 1111233444557788999999999999
Q ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 113 GGA-GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 113 G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
|++ .+.+..+..++.+++...+.+...+..++.++ +- ......++..+++........++
T Consensus 118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------------gi-----~~~~~iii~~~iv~iYt~~GG~~ 178 (471)
T TIGR02119 118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------------GL-----SYLTALFIFSSSVLIYTTFGGFR 178 (471)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CC-----CHHHHHHHHHHHHHHHHHhhhHH
Confidence 965 46777777777777766666666666553332 11 11122233334566667778888
Q ss_pred hhhhhHHHHHHHH
Q 020541 192 SLRYTSALSVGLA 204 (325)
Q Consensus 192 ~l~~~s~~~~~~~ 204 (325)
...++..+-.++.
T Consensus 179 av~~td~iQ~~v~ 191 (471)
T TIGR02119 179 AVALTDAIQGIVM 191 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776433
No 59
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.80 E-value=0.01 Score=55.58 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=96.7
Q ss_pred CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh-h
Q 020541 38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG-A 115 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~-~ 115 (325)
.|+.+.+...+.+..+.+|++ .+..|-...+.|+. +....+...........+..+..++.+..|..|..++.||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 467788889999988888875 66899666667753 22222222233334455666666777899999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
.+.+..+..++..+......+...+..++.++ +- ......++..++++-......++...+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~--------------gi-----~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELIT--------------GL-----DLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------Cc-----hHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 66776777777777777777777777664332 11 111222333345556677778888888
Q ss_pred hHHHHHHH
Q 020541 196 TSALSVGL 203 (325)
Q Consensus 196 ~s~~~~~~ 203 (325)
...+..++
T Consensus 142 Td~iQ~~i 149 (407)
T TIGR00813 142 TDTIQAVI 149 (407)
T ss_pred HHHHHHHH
Confidence 88877643
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.77 E-value=0.015 Score=55.86 Aligned_cols=148 Identities=16% Similarity=0.053 Sum_probs=89.7
Q ss_pred CCCCCcHHHHHHHHHHHhHhh-hhchHHHHHHhhChHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIM---IVLVGWLTESSIDMIMRFSRASKSATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~-giL~lP~~f~~~G~~~g~i~---l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (325)
-.|+.+.+...+.+..+.+|+ ..+..|-...+.|+...... .....+...+-...+.+..++.+..|..|+.++.|
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ry 118 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARY 118 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHh
Confidence 367778899999998888877 46788855556675321111 11111111122333445567888999999999999
Q ss_pred ChhH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 113 GGAG-RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 113 G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
|++. +.+..+...+..++.....+...+..++.++ +- + . ....++..+++........++
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------------gi---~-~-~~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------------GI---S-Y-ETGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC---C-H-HHHHHHHHHHHHHHHHhccHH
Confidence 9654 5566665666555555666666666663332 11 1 1 122233334556677788888
Q ss_pred hhhhhHHHHHHH
Q 020541 192 SLRYTSALSVGL 203 (325)
Q Consensus 192 ~l~~~s~~~~~~ 203 (325)
...+...+..++
T Consensus 180 av~~TD~iQ~~i 191 (483)
T PRK09442 180 AVVLTDALQGIV 191 (483)
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.75 E-value=0.02 Score=54.97 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=101.8
Q ss_pred CCCCCcHHHHHHHHHHHhHh-hhhchHHHHHHhhChHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVG-AGIMALPATVKELGLIPGLIMIV---LVGWLTESSIDMIMRFSRASKSATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG-~giL~lP~~f~~~G~~~g~i~l~---~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (325)
..|+.+.+-.......+.++ -.++.+|-...+.|+...+.... ...+...+-...+.+..++.+..|..|.-++.|
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF 115 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence 35666777788888888888 67889997777777654444333 334444445566666666668889999999999
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 113 G-GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 113 G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
| |+.|.+..++..+....-+...+...+..++..++ . ......+....++........++
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i------------~~~~~~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------I------------SYVTGILIGALIVALYTFLGGLR 176 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------C------------CHHHHHHHHHHHHHHHHHHcChh
Confidence 9 99999999999999999888888888877633321 0 11111222234556666667777
Q ss_pred hhhhhHHHHHH
Q 020541 192 SLRYTSALSVG 202 (325)
Q Consensus 192 ~l~~~s~~~~~ 202 (325)
+..++..+-..
T Consensus 177 av~~Td~iqg~ 187 (493)
T COG0591 177 AVVWTDFIQGL 187 (493)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 62
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.74 E-value=0.0014 Score=61.12 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=63.9
Q ss_pred CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-----HHH
Q 020541 38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPG----LIMIVLVGWLTESSIDMIMRFSRASKSATY-----SGV 107 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g----~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y-----~~l 107 (325)
+++.|.+|+++....+++|+| ++.+|-+...+| -.+ ++..++.+.....-..+..+..++.+..+| -++
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 345899999999999999998 999999977666 334 333333222222222333333223333336 788
Q ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 108 VADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
-+...|||...++.++.+.+.............+.+
T Consensus 123 ~~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~ 158 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVFLIASFGIGNMVQANAIASAL 158 (425)
T ss_pred HHHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888998888887733332223344444444444
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.64 E-value=0.0051 Score=57.60 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 020541 38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (325)
.|+.+.+...+.+..+.+|++ ++..|-...+.|+.. ....+............+.+-.++.+..|..|.-++.||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCch
Confidence 467788999999999999885 678897777777643 222233333333444556666678899999999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 117 --RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 117 --~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+.+..+..++.........+...+..++.++ + ++.. ...++..++++.......++...
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------------g---i~~~--~~~~i~~~i~~iYt~~GGl~av~ 144 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------------G---IPYN--TAILIVGVIVIIYTFFGGLRAVA 144 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------T-----HH--HHHHHHHHHHHHTTCTT------
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhcc--------------c---hhhh--HHHHHHHHHHHHhhhhhhHhhhh
Confidence 6666565666666666666676676663322 1 1111 12223334555577777888888
Q ss_pred hhHHHHHHHHHH
Q 020541 195 YTSALSVGLAIV 206 (325)
Q Consensus 195 ~~s~~~~~~~~~ 206 (325)
+...+..++.++
T Consensus 145 ~td~iQ~~i~~~ 156 (406)
T PF00474_consen 145 WTDFIQGVIMII 156 (406)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777644333
No 64
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.62 E-value=0.002 Score=60.81 Aligned_cols=63 Identities=11% Similarity=-0.018 Sum_probs=52.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541 238 SFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (325)
Q Consensus 238 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~ 300 (325)
..+.+..++-.....+.|...-.++.+|.+|++ +.||++..+..+.+++=..+-+.-.++-++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456677778888899999999999999999999 889999999888888877777766666665
No 65
>PRK09395 actP acetate permease; Provisional
Probab=97.62 E-value=0.042 Score=53.67 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=89.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-h
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG-G 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G-~ 114 (325)
-.|+.+.+...+.+..+.++++ .+..|-...+.|+..... .+-..+-......++.+-.++.+..|+.|..++-|| |
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~ 145 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQG 145 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCc
Confidence 4677888888899999988875 679996666677643221 111111111122344555567788999999999999 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
+.|.+..+...+..+......+...+..++.++ +- + . ....++..+++........++...
T Consensus 146 ~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------------gi---~-~-~~~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 146 PIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------------GL---N-Y-HVAVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC---C-H-HHHHHHHHHHHHHHHhhcchHHHH
Confidence 578887777666655555555555555553322 11 1 1 122223334556666777788888
Q ss_pred hhHHHHHH
Q 020541 195 YTSALSVG 202 (325)
Q Consensus 195 ~~s~~~~~ 202 (325)
+...+-.+
T Consensus 207 ~TD~iQ~i 214 (551)
T PRK09395 207 WVQIIKAV 214 (551)
T ss_pred HHHHHHHH
Confidence 87777654
No 66
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.50 E-value=0.014 Score=52.84 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR-FSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~y~~l~~~~~G~~ 115 (325)
+.-..+.+..+-|-..++-|+|-..=|..=.+-||.++.+=+++-+++.---.....- ...|++.++.+|++++..||+
T Consensus 48 DYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 48 DYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKR 127 (376)
T ss_pred CCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHH
Confidence 4566788889999999999999999996668899998877666655554444444433 445788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
+++++.++.++.+.....++.....+.+
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888888887766
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.45 E-value=0.065 Score=52.28 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=88.3
Q ss_pred CCCCcHHHHHHHHHHHhHhh-hhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHcC-h
Q 020541 38 IDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASKSATYSGVVADAFG-G 114 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~-giL~lP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~y~~l~~~~~G-~ 114 (325)
.|+.+.+...+.+..+.+++ +.+..|-...+.|+..-+ ..+ ...+.+ ....++.+-.++.+..|..|..++-|| |
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~-~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLI-YSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQR 143 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCc
Confidence 57777888888888887776 578999666667753222 111 111111 223445666677788999999999997 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
..|.+..+..++....-....+...+..++.++ +.+ .+ ...++..+++........++...
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------------gi~----~~-~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------------GLN----YH-VAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CCC----HH-HHHHHHHHHHHHHHHhhhhHHHH
Confidence 567776666666655555555666665553332 111 11 12223334555566777787878
Q ss_pred hhHHHHHHH
Q 020541 195 YTSALSVGL 203 (325)
Q Consensus 195 ~~s~~~~~~ 203 (325)
+...+-.++
T Consensus 205 ~td~iQ~~i 213 (549)
T TIGR02711 205 WVQIIKAVL 213 (549)
T ss_pred HHHHHHHHH
Confidence 877777643
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=97.44 E-value=0.048 Score=51.10 Aligned_cols=207 Identities=12% Similarity=0.131 Sum_probs=104.7
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541 68 ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (325)
Q Consensus 68 ~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 147 (325)
..++..+++.+++...+...-..+......|. ..++.-++|..||++|.++..+...+...|=........+..+++.+
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35566666666655554444444444444444 56788999999999999999888887776655555455554443221
Q ss_pred ccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 020541 148 LNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMP 227 (325)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (325)
+. +... .+.+.. ++..+.... ..+.++++..+...+....++........+ ..+..+..
T Consensus 117 --------------~~---~~~~-~~~i~~-~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~-~~g~~~~~ 175 (404)
T PRK11017 117 --------------GL---DINL-LIVLSG-LLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVND-VGGLDGLK 175 (404)
T ss_pred --------------CC---CHHH-HHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchhhhh
Confidence 10 1111 122222 233333222 233444444444432222222222111111 11101100
Q ss_pred CCCccccchhhhhhhhhhhhhhhhhh-hhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 228 CLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 228 ~~~p~~~~~~~~~~~~~~~~i~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
...|. +...+..++...+-.+ ..-.+.+...+..|+|++.......+..+...+...+|...-...|+.
T Consensus 176 ~~~~~-----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 176 AIVPA-----EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred cCCCC-----CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 11111 1123334444333333 345678899999888776556666777777777777787776777653
No 69
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.059 Score=50.47 Aligned_cols=171 Identities=11% Similarity=0.093 Sum_probs=97.4
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 020541 105 SGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL 184 (325)
Q Consensus 105 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl 184 (325)
-.+.+..||.+|.++..+.+.+.+.|-...-.+..++.... ..+ ++......++..+..+.-+
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------------~~~---~~~~~~ili~g~l~~l~~i 146 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--------------GTG---LPVWAGILIIGVLMTLVTI 146 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc--------------CCC---CcHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999888888885311 001 1111111211111223333
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCccccchhhhhhhhhhhhhhhhhh-hhhhchhHH
Q 020541 185 ISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTID-GSISMPCLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPI 262 (325)
Q Consensus 185 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf-~~~~~~~~i 262 (325)
.-.|.++.+.+.+.....+... ..+ +...+ ....+....+. ..+..++..+++..+-.+ ..-+.....
T Consensus 147 fG~r~l~~l~~~a~~~~~~lf~---~l~----~~~~~~~~~~~~~~~~~---~~~~~~fl~a~slv~g~~~sw~~~~aDy 216 (442)
T COG1457 147 FGYRALHKLERIAVPLLLLLFL---YLL----ALLFRSKGGLDALWVKG---PTSPLSFLSALSLVIGSFASWGPYAADY 216 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHH----HHHHhcccccceeeccC---CCcchhHHHHHHHHHHHHHhhhhhhhhh
Confidence 3455566666655555422221 111 11122 11111111110 122233444444333223 345566788
Q ss_pred HhhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 020541 263 ENELKDPT--QIKSIVRTSITLCSTVYITTSFFGLLLFGDRT 302 (325)
Q Consensus 263 ~~~m~~p~--~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~ 302 (325)
.+.+++|+ |.-.....+......+-.++|.....+=|+..
T Consensus 217 sRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 217 SRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88899888 66677778888888888889998888888765
No 70
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.36 E-value=0.084 Score=49.14 Aligned_cols=208 Identities=14% Similarity=0.081 Sum_probs=114.6
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 69 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
.++..+++..++..++...-.-+......|+ ..++.-+.|..||++|.++..+...+...|=-.......++.+..+++
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~ 104 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG 104 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444443333333333343 557888999999999999999999998888888888888888866553
Q ss_pred cCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 020541 149 NGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC 228 (325)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (325)
.. ++.. ......++..++..+.+. ...+.++++..+..++....++........ +.+.....
T Consensus 105 ~~----------~~~~----~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~ 166 (386)
T TIGR02358 105 RL----------FGEE----SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFS---KADLSELW 166 (386)
T ss_pred Hh----------cCCC----chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhhc
Confidence 21 0100 011111122222333322 244555555555554332222222222211 11111100
Q ss_pred CCccccchhhhhhhhhhhhhhhhh-hhhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 229 LLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 229 ~~p~~~~~~~~~~~~~~~~i~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
..|. ..+ +..++...+-. -......+...+..|+|+|..+...++..+...+..++|.....+.++.
T Consensus 167 ~~~~---~~s---~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 167 NRAG---DMS---FAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred CCCC---Ccc---HHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0111 011 22222221111 1233458899999998888888888899999999999999887777654
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.34 E-value=0.11 Score=48.93 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=129.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (325)
++|+=+.++-+..-.+...-.+.-.+-...-+.| +...++.+++...+....+.+-.+...+ ...+|+.++|.-||-
T Consensus 37 ~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~-~gIpFpv~~RaSFGi 115 (497)
T COG1953 37 EQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSK-YGIPFPVLSRASFGI 115 (497)
T ss_pred ccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccc-cCCCchHHHHHHHhh
Confidence 5566677665555444433333222222222233 4444444444433333322222222222 356899999999998
Q ss_pred hHHH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 115 AGRA---LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 115 ~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
+|.. +....+.+.-+|... -..++.+..++.....+....+........++...... +.+-++-.++..+.++
T Consensus 116 ~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F-~ifW~l~~l~~~~g~~ 191 (497)
T COG1953 116 YGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICF-FIFWVLQLLVLFKGME 191 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHH-HHHHHHHHHHHhcCHH
Confidence 7754 444444444444332 22333332222211111111011000111122222222 2223444456677888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc-c-ccchhhhhhhhhhhhhhhhhhh-hhhchhHHHhhcCC
Q 020541 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP-E-ISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKD 268 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~~~~~~~~~~~~~i~~faf~-~~~~~~~i~~~m~~ 268 (325)
.++++-.++..+..+.++..+.....+ ..+. ......| . .+.....+.+...+...+--|. ..-|.|...+.-|+
T Consensus 192 ~Ir~~~~~a~p~~~~~~~gl~Iw~~~~-a~g~-~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 192 SIRKFETWAGPLVYIAMLGLAIWALVK-AGGS-SILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHh-cCCc-CccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 999988888766655555544443333 2221 1111111 1 1112223333333322222221 56788899999888
Q ss_pred CcchhH----HHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhhhcCCCCCCCc
Q 020541 269 PTQIKS----IVRTSITLCSTVYITTSFFGLLLFGDR--TLDDVLANFDGDLGI 316 (325)
Q Consensus 269 p~~~~~----~~~~~~~~~~~~y~~~g~~gy~~fG~~--~~~~il~n~~~~~~~ 316 (325)
|+.-.+ .+-..+.+..++=...+..++..||+. ...++++++.+....
T Consensus 270 ~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~ 323 (497)
T COG1953 270 QKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYA 323 (497)
T ss_pred hhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHH
Confidence 773322 333333334444455556678899998 567888888865443
No 72
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.34 E-value=0.0048 Score=58.46 Aligned_cols=250 Identities=9% Similarity=0.043 Sum_probs=121.0
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (325)
++|+.+.++.+..-....+....+.+-..... .++..+++.+++..++...-..+......|+ ..+...++|..||+
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~FG~ 83 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASFGY 83 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-T
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhccCc
Confidence 56666777777777777777766666544433 3566666666666665555444544444454 45677888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcch-hhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTE-EWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
+|.++..+...+...|-...-..+.++.+..+++....+....+ ..... ........+...++..+ .....++.+
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~-~~~~g~~~l 159 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGI---ALPLWVCFFIFWLIQTL-FAIYGMKAL 159 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH--------------HHHHHHHHHHHH-HHCTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcc---hhhHHHHHHHHHHHHHH-HHhcCHHHH
Confidence 99999999999888888888888888888766643211000000 00000 01111111111112222 122334444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCccccchhhhhhhhhhhhhhhhhh-hhhhchhHHHhhcCCCcc
Q 020541 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPIENELKDPTQ 271 (325)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~~faf-~~~~~~~~i~~~m~~p~~ 271 (325)
+++..+...+.....+. ..++...+.+. +... .+....... .+..++...+-.+ ..-.+.+...+.+|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~ 233 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIG---MLIWALSKAGGGPLLS-APASPSPSG--SFLAAIALVIGSWISWAPNASDYSRYAKSDTS 233 (440)
T ss_dssp HHHHHCCHHHHHHHHHH---HHHHHHHHCT-HHHCC-S--S----S---HHHHHHHHHCCCHHHHCCCHHHHTTC--HHH
T ss_pred HhHHhhhhHHHHhhhhh---eeEEEeecCCcchhhh-CcccchhHH--HHHHHHHHHHhhhhhhhhccccHHhhCCCCCC
Confidence 44444443222211111 11222222211 1111 010000000 1223333322222 244556789999998887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020541 272 IKSIVRTSITLCSTVYITTSFFGLLL 297 (325)
Q Consensus 272 ~~~~~~~~~~~~~~~y~~~g~~gy~~ 297 (325)
-.+...++..........+++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 234 AWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 77778888877777777777766543
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.30 E-value=0.11 Score=50.80 Aligned_cols=146 Identities=10% Similarity=0.060 Sum_probs=91.8
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (325)
-.|+.+++...+.+..+.++++ .++.|-...+.|+..-...+ -..........++.+-.+|.+..|..|.-++.||++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCCC
Confidence 4688899999999999988774 77899666667753222211 111111223456667778889999999999999865
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 116 -GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 116 -~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
.+.+..+..++....-....+...+..++.++ +. ......++..+++........++...
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------------gi-----~~~~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------------EV-----DFETGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CC-----CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56666666666666555555555565553322 11 11122223334566667777888888
Q ss_pred hhHHHHHH
Q 020541 195 YTSALSVG 202 (325)
Q Consensus 195 ~~s~~~~~ 202 (325)
+...+..+
T Consensus 170 ~TD~iQ~i 177 (552)
T TIGR03648 170 WTQVAQYI 177 (552)
T ss_pred HHHHHHHH
Confidence 88877753
No 74
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.15 E-value=0.21 Score=46.23 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHHhHhhhhchHH-HHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHH
Q 020541 49 NLSTTIVGAGIMALP-ATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIV 125 (325)
Q Consensus 49 ~l~~~~iG~giL~lP-~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (325)
.+..-.+|+|.|-.| +.-+++| |..+.+..++.++..-....+ +..+. ..+|.++.++ +||+...++.+.+.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~-gG~~~~l~~~-~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALV-GGGYDSLSAR-IGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeec-CCCHHHHHHH-hChHHHHHHHHHHH
Confidence 456678999999999 4444566 666666666666654433333 22222 3589888655 56777766666555
Q ss_pred HH
Q 020541 126 VN 127 (325)
Q Consensus 126 ~~ 127 (325)
+.
T Consensus 78 l~ 79 (378)
T TIGR00796 78 LT 79 (378)
T ss_pred HH
Confidence 44
No 75
>PRK15015 carbon starvation protein A; Provisional
Probab=97.10 E-value=0.04 Score=53.43 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=83.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR-FSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~y~~l~~~~~G~~ 115 (325)
+.-..+.+-.+-|=..++-|+|.+.=|..=.+.||.++.+=+++-.++.---.....- ...|++.+|.++++++..||+
T Consensus 79 DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~ 158 (701)
T PRK15015 79 DYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPT 158 (701)
T ss_pred CcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHH
Confidence 3555566778888899999999999997777999999887666655543333333222 344778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
++.++.+..++.+.....++..++.+.+
T Consensus 159 ~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 159 AGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888877777666
No 76
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.87 E-value=0.14 Score=48.63 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=83.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR-FSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~y~~l~~~~~G~~ 115 (325)
+.-..+.+..+-|=..++-|+|.+.=|.-=.|.||.++.+=+++-.++.---...++- ...|++.+|..|++++..|+.
T Consensus 48 DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~ 127 (575)
T COG1966 48 DYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRT 127 (575)
T ss_pred ccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhh
Confidence 4667788889999999999999999998888999998877555544443322333322 334678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
.+.+..+..++........+.....+.+
T Consensus 128 a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 128 AKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887777777777666
No 77
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0044 Score=58.88 Aligned_cols=232 Identities=16% Similarity=0.176 Sum_probs=132.5
Q ss_pred CCCCCcHHHHHHHHHH-HhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHH
Q 020541 37 GIDGASFSGAVFNLST-TIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADA 111 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~-~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~~~y~~l~~~~ 111 (325)
++-+-++++.++.-.- .+.|.= .|=++|...|+|...+++++..+..++..|..=.+....+. +...|.-+ .+.
T Consensus 26 ~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yfli-s~s 104 (643)
T KOG2083|consen 26 GPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLI-SRS 104 (643)
T ss_pred CceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEE-Eec
Confidence 3444466665553222 222221 45788999999999999999888888887766555554443 22234333 455
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
+|+-.+--++++..+.+.-.+..|+.-++|.+.++++.. ..++ ... +..+.+++++-++. -.++
T Consensus 105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~-------s~~~------i~g--i~~vt~~ill~i~~-ag~~ 168 (643)
T KOG2083|consen 105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE-------SKEM------IDG--IGSVTVLILLAINV-AGVE 168 (643)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-------cHHH------hcc--hhHHHHHHHHHhhh-ccch
Confidence 677666677888888888889999999999998877532 0010 011 12222222222222 1223
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh-cc------CCC------CCCCCCccccchhhhhhhhhhhhhhhhhhhhhhc
Q 020541 192 SLRYTSALSVGLAIVFVVITAGVAIVKT-ID------GSI------SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHN 258 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~-~~------~~~------~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~ 258 (325)
+-++..++-. ++ +++.+...+... +. +.. -..+..|++.+. ..++.-++++.-+..|.-.
T Consensus 169 w~~k~q~~ll---~i-l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgila 241 (643)
T KOG2083|consen 169 WEAKLQIVLL---LI-LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILA 241 (643)
T ss_pred hHHHHHHHHH---HH-HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhc
Confidence 3222222221 11 111111111110 10 100 011223333322 2456666777777777777
Q ss_pred hhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHH
Q 020541 259 IHPIENELKDPT-QIKSIVRTSITLCSTVYITTSF 292 (325)
Q Consensus 259 ~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~ 292 (325)
-..+...+++|+ ..|+....+..+.+.+|+.+-.
T Consensus 242 G~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 242 GANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred cccccCCCCCchhhcccchhhhhhhhhhhhhhhhh
Confidence 788899999999 8899999999999999966543
No 78
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0091 Score=57.67 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=125.5
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh--hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG--IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADA 111 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g--iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~~~y~~l~~~~ 111 (325)
++.|.+-+..+|.-+.-.+=+- .|=+++...++|+...+..+++...+...|..-++..+.+. +..-|-.+ .+.
T Consensus 63 ~r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymI-SRs 141 (945)
T KOG1288|consen 63 NRAKLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMI-SRS 141 (945)
T ss_pred CcccccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEE-Ecc
Confidence 3446666666555444333232 33467888889999888888888888887777666555443 22233222 333
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
+|+-.+--++...++.+...|..++.-+.|-+-..+....+-...........|| +.....++. .+++.+|++.. .
T Consensus 142 LGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww--~fly~t~vl-~l~~~vc~lGs-a 217 (945)
T KOG1288|consen 142 LGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWW--RFLYTTLVL-ALCLIVCLLGS-A 217 (945)
T ss_pred cCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcch--hhHHHHHHH-HHHHHHHHhhH-H
Confidence 4443333344444555555666666666665544444322221111122223454 222222111 12333333321 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCCcccc-----------chhh-----------------hh
Q 020541 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMP---CLLPEIS-----------KQAS-----------------FW 240 (325)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~-----------~~~~-----------------~~ 240 (325)
-.++.+.+.+ +.+...+..+.++ .++.+....+ +..|... .+.+ ..
T Consensus 218 lfAkas~i~f-~~is~s~~si~iS--~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~ 294 (945)
T KOG1288|consen 218 LFAKASNILF-VVISVSLFSIPIS--FIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYE 294 (945)
T ss_pred HHHhhhhhhh-hHHHHHHhhhhhe--eEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCce
Confidence 2333333332 1111112221111 1222221111 1111100 0011 12
Q ss_pred hhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541 241 KLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 241 ~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
++-..++++.-+-.|.-.--....|+|+|+ ..|+-..+++..+++.|.++.+..-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhc
Confidence 455566666655555555567788999999 8899999999999999998876543
No 79
>PRK10484 putative transporter; Provisional
Probab=96.50 E-value=0.9 Score=44.12 Aligned_cols=157 Identities=8% Similarity=0.008 Sum_probs=84.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (325)
-.|+.+++-..+.+..+.++++ .+..|-...+.|+....... ............+..-.+|.+..|..|..++.||++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIALIILALIFLPRYLKSGITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCch
Confidence 4688899999999998888775 66899655566754321111 111111122333444445678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMI-IIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
.+.+......+........... ..+..+..++.- ...++-+. ........+...++.........++...
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--------~~~~gi~~-~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--------SELLGISY-GAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------hhhcCCcH-HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 8887776655443332222111 122222111100 00111110 0011111111223456667778888888
Q ss_pred hhHHHHHHH
Q 020541 195 YTSALSVGL 203 (325)
Q Consensus 195 ~~s~~~~~~ 203 (325)
+...+..++
T Consensus 186 ~TD~iQ~vi 194 (523)
T PRK10484 186 VSDTINGIG 194 (523)
T ss_pred HHHHHHHHH
Confidence 888887643
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.42 E-value=0.97 Score=43.49 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=81.0
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCCHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-----ASKSATYSGVVAD 110 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-----~~~~~~y~~l~~~ 110 (325)
-.|+.+++...+.+..+.+++. ++..|-...+.|+...+. .....+........+.+-.+ +++..|..|..++
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 3677889999999988888765 567885555677643222 11111111122223322222 5678899999999
Q ss_pred HcChhH---HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccc
Q 020541 111 AFGGAG---RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF 187 (325)
Q Consensus 111 ~~G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~ 187 (325)
-||++. +.+..+...+....-....+...+..++.++ +.+ .+ ...++..+++......
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------------gi~----~~-~~iii~~~i~~~Yt~~ 173 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------------GLD----YK-TGLLIGALIIVIYTFF 173 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------Ccc----HH-HHHHHHHHHHHHHHHh
Confidence 999643 3344444444333333444444444443222 111 11 2222333456666677
Q ss_pred cccchhhhhHHHHHHH
Q 020541 188 RRVDSLRYTSALSVGL 203 (325)
Q Consensus 188 ~~l~~l~~~s~~~~~~ 203 (325)
..++...+...+-.++
T Consensus 174 GGl~av~~TD~iQ~~i 189 (487)
T TIGR02121 174 GGFLAVSWTDFVQGLL 189 (487)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7888888888777643
No 81
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.25 E-value=1.2 Score=42.97 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDM-----IMRFSRASKSATYSGVVAD 110 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~-----l~~~~~~~~~~~y~~l~~~ 110 (325)
-.|+.+.+...+.+..+.+++. .++.|-...+.|+..-+.. +...+.......+ -....++.+..|..|..++
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 4688899999999999988886 5689966667786432111 1111111111112 1122234577899999999
Q ss_pred HcChh---HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccc
Q 020541 111 AFGGA---GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF 187 (325)
Q Consensus 111 ~~G~~---~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~ 187 (325)
-||++ .+.+..+...+....-+...+...+..++.++ +- + .....++..++++.....
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------gi---~--~~~~iii~~~iv~iYt~~ 177 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------GM---S--YETALWAGAAATILYTFI 177 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC---C--HHHHHHHHHHHHHHHHHh
Confidence 99964 34444454444444444444444455442222 11 1 112233334467777788
Q ss_pred cccchhhhhHHHHHHH
Q 020541 188 RRVDSLRYTSALSVGL 203 (325)
Q Consensus 188 ~~l~~l~~~s~~~~~~ 203 (325)
..++...+...+-.++
T Consensus 178 GGl~aV~~TD~iQ~~i 193 (502)
T PRK15419 178 GGFLAVSWTDTVQASL 193 (502)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888888888888643
No 82
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.19 E-value=0.06 Score=50.06 Aligned_cols=249 Identities=15% Similarity=0.120 Sum_probs=118.2
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCCCHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-----RASKSATYSGVVAD 110 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-----~~~~~~~y~~l~~~ 110 (325)
+++-.|...-+...+++.+|.| +--.||...+-|-. +.+++.++..+..=--.++.|.. +.+...+|+.++.
T Consensus 5 re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~- 82 (439)
T COG0733 5 REQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP- 82 (439)
T ss_pred ccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc-
Confidence 4566688899999999999998 77899887776522 23333333332222233334432 2334445666654
Q ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcc---C-CCcchhhhcccccchhHHHHHHHHHHHhhcccc
Q 020541 111 AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVH---H-SGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS 186 (325)
Q Consensus 111 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~ 186 (325)
+|+ ...++...++..+..+.-|.++.|=.+.-+...... + .+....++...--+..........+.++.-+..
T Consensus 83 --~~~-~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv 159 (439)
T COG0733 83 --KKK-WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV 159 (439)
T ss_pred --Ccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 232 233334434444444444444444333222211000 0 000111221110001111111111112222223
Q ss_pred ccccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCCccccchhhhhhhhhhhhhhhhhhh-hhhchhH
Q 020541 187 FRRVD-SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM---PCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHP 261 (325)
Q Consensus 187 ~~~l~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~i~~faf~-~~~~~~~ 261 (325)
.+.++ .+.+.+-+-..+..+.+ +++.++....+.... --..|+++...+..-+..++|...|+.+ +...+.+
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~---i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mit 236 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLF---IILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMIT 236 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHH---HHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 36666666554332222 333344444332211 1123555544445567788899999987 5566666
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 020541 262 IENELKDPTQIKSIVRTSITLCSTVYITTSFF 293 (325)
Q Consensus 262 i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~ 293 (325)
..+.++|+++..+........-+.+=++.|+.
T Consensus 237 YsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 237 YSSYLSKKSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred HHhhcCcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 67778877788776555555555555554443
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.66 E-value=1.9 Score=40.68 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=117.8
Q ss_pred hhhhchHHHHHHhhChHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHcCh-hHHHHHHHHHHHHHHHHH
Q 020541 56 GAGIMALPATVKELGLIPGLIMIVLVGWLTESS--IDMIMRFSRASKSATYSGVVADAFGG-AGRALLQVCIVVNNLGML 132 (325)
Q Consensus 56 G~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t--~~~l~~~~~~~~~~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~ 132 (325)
-++.|.++-...-.|+- |.+-+ .|...-|. ..++.+-.|+.++.|.+|....-++. +.|.+..+.-++..+.-.
T Consensus 59 aASflGiag~I~~~GYd-G~~Y~--iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Yl 135 (529)
T COG4147 59 AASFLGIAGLIFISGYD-GLIYS--IGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYL 135 (529)
T ss_pred hHhhhchhHhhhhcccc-hHHHH--HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 34566666555455532 22211 12222222 34556677788999999998888875 556666655555555555
Q ss_pred HHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHH
Q 020541 133 VVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA 212 (325)
Q Consensus 133 ~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 212 (325)
++.+.-.+..+..+++ .+. ...+++..+++........++...|...+--++.+...++..
T Consensus 136 iaQmvGaG~li~~l~g--------------v~~-----~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~a 196 (529)
T COG4147 136 IAQMVGAGLLISLLLG--------------VPY-----HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMA 196 (529)
T ss_pred HHHHHhhHHHHHHHhC--------------CCc-----eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666666644332 110 011222333555556667778888887776654444444444
Q ss_pred HHHHHHhccCCCC--------CCCCCcc--ccchhhhhhhhhhhhhhhhhhhhhhchhHHHhh-c--CCCcchhHHHHHH
Q 020541 213 GVAIVKTIDGSIS--------MPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENE-L--KDPTQIKSIVRTS 279 (325)
Q Consensus 213 ~~~~~~~~~~~~~--------~~~~~p~--~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~-m--~~p~~~~~~~~~~ 279 (325)
.....+......+ ++.+.+. .++.....+-...++...--..+...+|++.-. - .+-+..++...|+
T Consensus 197 i~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA 276 (529)
T COG4147 197 IMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWA 276 (529)
T ss_pred HHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHH
Confidence 3334443221110 1110000 011111123334444444444566677766322 2 2333778899999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020541 280 ITLCSTVYITTSFFGLLL 297 (325)
Q Consensus 280 ~~~~~~~y~~~g~~gy~~ 297 (325)
..+...+|+..-+.|+.+
T Consensus 277 ~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 277 TGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998888764
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.56 E-value=1 Score=42.10 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=54.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CC-----CHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK---SA-----TYSGV 107 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~---~~-----~y~~l 107 (325)
++++.|.+|++..-+.+.+|+| +-...-+...+| ..++.=+.+.+++..-+-..-+....+++ .+ .-...
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yy 93 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYY 93 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHH
Confidence 5678999999999999999998 778998987666 23444455556655555444333333321 11 12334
Q ss_pred HHHHcC-hhHHHHHHHH
Q 020541 108 VADAFG-GAGRALLQVC 123 (325)
Q Consensus 108 ~~~~~G-~~~~~~~~~~ 123 (325)
.++.+| ||...++.++
T Consensus 94 i~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 94 IEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHhccchHHHHHHHH
Confidence 455555 4555566555
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.68 E-value=0.49 Score=43.80 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=54.6
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541 69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (325)
Q Consensus 69 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 147 (325)
+|.+.++.+..+..-+.+....-..+..+. ++..-..+++++.+|++|+.+..+.+.+.|+..+++.....+|.++++.
T Consensus 221 ~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~ 300 (378)
T TIGR00796 221 AGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLV 300 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455445554444444444443222221111 2444588999999999999999999999999999999999999885543
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.31 E-value=0.4 Score=44.93 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=57.2
Q ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 65 TVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 65 ~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
...++|.+.+..+.++.+.+.+..+..-.... ..++..=+.+++++.+|+.|..+..+++.+.|+-.+++-....+|++
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445565555555555444443322221111 11233347889999999999999999999999999999999999999
Q ss_pred ccccc
Q 020541 144 SGAWL 148 (325)
Q Consensus 144 ~~~~~ 148 (325)
+++++
T Consensus 303 ~~~~~ 307 (427)
T PF05525_consen 303 SELFP 307 (427)
T ss_pred HHHhc
Confidence 76654
No 87
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.27 E-value=1.6 Score=41.12 Aligned_cols=267 Identities=13% Similarity=0.057 Sum_probs=135.8
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHc
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAF 112 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~ 112 (325)
.+|.=|+++-+..=....++.+.--..-.--+.| |..++++..+.-.++. ..++-..+-. -+-+++-..|.-|
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~---~f~~lns~~G~~yhIsFpv~sR~sF 128 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTA---IFLVLNSRPGSDYHISFPVLSRSSF 128 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHH---HHHHHccCCCcccccceeeeeeeeh
Confidence 5777899998888888888888877776666676 7777776665444422 1111111111 1235555556666
Q ss_pred ChhH---HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 020541 113 GGAG---RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (325)
Q Consensus 113 G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~ 189 (325)
|-++ ..+..+.+...-+|... -+.++.++-+++....+..-.+..++...-++.+++..++.=++-+|..+ ..
T Consensus 129 GiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~-~~ 204 (572)
T KOG2466|consen 129 GIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYW-FP 204 (572)
T ss_pred hhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheee-cc
Confidence 6554 45555555555555443 44555555444422211111233444333344444443333234444433 34
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCCccccchhhhhhhhhhhhhhhhhhh-hhhchhHHHhhc
Q 020541 190 VDSLRYTSALSVGLAIVFVVITAGVAIVKTIDG--SISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENEL 266 (325)
Q Consensus 190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~-~~~~~~~i~~~m 266 (325)
..+++++-.+..+++...+...+... .+-.++ +..+.+.. .....-.|.++.++.-.+-.|. ...|.|...+--
T Consensus 205 p~~ir~lf~~ka~~t~fA~~g~LIw~-l~kAhG~G~l~~~~st--~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAFGFLIWL-LKKAHGLGHLFDSKST--VSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHH-HHhcCCccccccCCCc--ccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 55666666655543333333322222 222233 11111111 1111222333333322222222 566788888888
Q ss_pred CCCcchhH----HHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhhhcCCCCC
Q 020541 267 KDPTQIKS----IVRTSITLCSTVYITTSFFGLLLFGDR--TLDDVLANFDGD 313 (325)
Q Consensus 267 ~~p~~~~~----~~~~~~~~~~~~y~~~g~~gy~~fG~~--~~~~il~n~~~~ 313 (325)
++|.+-.. ++.+.+.+...+=++.+..++..||.+ ..-++++++-.+
T Consensus 282 ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~ 334 (572)
T KOG2466|consen 282 KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDT 334 (572)
T ss_pred CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhcc
Confidence 88863332 344555555556666677889999986 456666666543
No 88
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=92.65 E-value=7.7 Score=38.03 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
..+.+..+...+++++.++.+..+...+++..+.+...+..+...-. +|.++.+++
T Consensus 299 ~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amar-----DGlLP~~fa 354 (557)
T TIGR00906 299 APFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMAR-----DGLLFKWLA 354 (557)
T ss_pred cHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCccHHHh
Confidence 34555555544567788887777777777777777666666654443 355555554
No 89
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=92.53 E-value=6.8 Score=36.76 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=85.3
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCH----HHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK----SATY----SGV 107 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~----~~~y----~~l 107 (325)
++++.|.+|++..-..+.+|+| +-...-+...+| ..++.=+.+.+++..-+...-.-...+++ ...| ..-
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 6788999999999999999999 778888888776 22333345555554444433333333221 1112 122
Q ss_pred HHHHcC-hhHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccc
Q 020541 108 VADAFG-GAGRALLQVCIVVNNL-GMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLI 185 (325)
Q Consensus 108 ~~~~~G-~~~~~~~~~~~~~~~~-g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~ 185 (325)
.++-+| ||...++.+..++.+. .........+.+.++..+ + ..+....+.. .++.-+.
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af--------------~-----~~~~~~gi~l-a~l~~~V 197 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF--------------G-----IPPLVTGIVL-ALLVALV 197 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc--------------C-----CcHHHHHHHH-HHHHHHH
Confidence 334444 5666666644433333 255666666666663222 1 1122222222 2333444
Q ss_pred cccccchhhhhHHHHHH-HHHHHHHHHHHHHH
Q 020541 186 SFRRVDSLRYTSALSVG-LAIVFVVITAGVAI 216 (325)
Q Consensus 186 ~~~~l~~l~~~s~~~~~-~~~~~~~~~~~~~~ 216 (325)
..+.++++..++...+. ++..+++..+++..
T Consensus 198 I~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~ 229 (452)
T COG1115 198 IFGGIKRIAKVSSKVVPFMAILYVLVALVIIV 229 (452)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655443 45555555554443
No 90
>TIGR00909 2A0306 amino acid transporter.
Probab=91.54 E-value=12 Score=35.09 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=44.2
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
....++.++..|+++..++.+...+.++++..+.+...+..+....++ +..+++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d-----g~lP~~~~ 319 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD-----GLLPGSLS 319 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCcHHHH
Confidence 456678888899999999999999999999999988888888666543 44455554
No 91
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=90.63 E-value=11 Score=36.53 Aligned_cols=54 Identities=6% Similarity=-0.113 Sum_probs=33.8
Q ss_pred hhhhhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 020541 242 LFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGL 295 (325)
Q Consensus 242 ~~~~~~i~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy 295 (325)
+..+++...|+.+ +.+.+....+.++++++..|...........+-++.|+..+
T Consensus 251 W~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if 305 (523)
T PF00209_consen 251 WIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIF 305 (523)
T ss_dssp HHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHH
T ss_pred HHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHH
Confidence 4677888888887 45566666666777778887666666666555554444333
No 92
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=89.39 E-value=8.6 Score=35.78 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=64.6
Q ss_pred HHHhHhhhhchHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcChhHHHHHHHHHHH
Q 020541 51 STTIVGAGIMALP---ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRALLQVCIVV 126 (325)
Q Consensus 51 ~~~~iG~giL~lP---~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 126 (325)
+|+.=.-|.-.-. .....+|++.++.+.++...+.+....--.... ...+..=.++..++.||+.|..+...++.+
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~l 287 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFL 287 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 3333334444333 333356777776666666555554410000000 011344578889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q 020541 127 NNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 127 ~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
.|+-.+++-....+|+.++++|
T Consensus 288 ACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 288 ACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999977765
No 93
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=88.37 E-value=10 Score=37.61 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=55.8
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELG----LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADA 111 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G----~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~ 111 (325)
+.+-.+...-.+..++-.+|-| +.=.|+.-.+-| .++=.++++++|.=..+--..+.+...+.+...+..++-..
T Consensus 34 R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif 113 (629)
T KOG3660|consen 34 RGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIF 113 (629)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHh
Confidence 3444588999999999999998 556996666544 23334444444444444444444444444433444343333
Q ss_pred cCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 020541 112 FGG-AGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (325)
Q Consensus 112 ~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 144 (325)
=|= ++..++.+....+......=.+....++.+
T Consensus 114 ~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~ 147 (629)
T KOG3660|consen 114 KGVGWASVVISALLAIYYIVILAWALYYLFSSFT 147 (629)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 232 333444444443333222222333344444
No 94
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.29 E-value=6.2 Score=37.26 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=53.0
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 020541 68 ELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (325)
Q Consensus 68 ~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~ 146 (325)
++|.+.++.+.++.+.+.+....--....+. ++..=.....++.+|++++.+..+.+.+.|+-.+++-....+|.+++.
T Consensus 230 ~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 230 WAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666665555555544443211100000 122235667888999999999999999999999999999999988543
No 95
>PRK00701 manganese transport protein MntH; Reviewed
Probab=81.98 E-value=48 Score=31.51 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020541 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~ 140 (325)
..++..|++++-+||+..++..+...+.+.+....-.+-.+
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a 132 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAA 132 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999998888777766666665555444333
No 96
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=80.65 E-value=7.4 Score=38.93 Aligned_cols=101 Identities=12% Similarity=0.223 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHHhHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHcChhHH
Q 020541 42 SFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADAFGGAGR 117 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~gi-L~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~~~y~~l~~~~~G~~~~ 117 (325)
+......=.+..+.|.-+ +=+-|....+|...+.+++++|++.+..|+.-+...+.+. ...+|--+ .+.+|+-..
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGPEFG 194 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGPEFG 194 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCcccc
Confidence 333334444555666643 3577888899999999999999999998887776666554 34466554 444566555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 118 ALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
-.++++..+..-.+...|+.-.-+.+
T Consensus 195 gAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 195 GAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred ceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 55666665555555555655555543
No 97
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=80.44 E-value=38 Score=32.79 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
......++-....||++..++....++..+..+++-+...+......-.
T Consensus 323 ~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 323 LGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred CCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 3567888889999999998888888888888888777777766654433
No 98
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=72.64 E-value=57 Score=30.44 Aligned_cols=54 Identities=13% Similarity=0.316 Sum_probs=43.9
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
...+.+...|+++.+++.+...+.++++..+.+...+..+....++ +.++++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d-----~~lP~~~~ 313 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD-----GVLPKWFA 313 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TSSSGGGG
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc-----cchhhhhh
Confidence 6678888888999999999999999999999998888888776654 34455554
No 99
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=72.34 E-value=37 Score=32.49 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=47.4
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcc-cccchhHHHHHHHHHHHhh
Q 020541 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQ-HWWTTRFTLLLLTTLFVFL 182 (325)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~i~~ 182 (325)
-.+.+++++|.+. +.+-+...+.++|..-+.+...+-.+....+ .|-+++.+.. +-....+...++...++.+
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar-----eG~LP~~~s~i~~~~~TP~~allf~~~~~i 348 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR-----EGHLPAFFSMISVRRFTPRPALLFSGLLSI 348 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-----ccCccHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 4567888999998 8999999999998777665555554433332 1223333331 1111223334444444555
Q ss_pred ccccccccchh
Q 020541 183 PLISFRRVDSL 193 (325)
Q Consensus 183 pl~~~~~l~~l 193 (325)
.+.+..++..+
T Consensus 349 ~~~~~~d~~~L 359 (479)
T KOG1287|consen 349 VLSLIGDFDQL 359 (479)
T ss_pred HHHHHhhHHHH
Confidence 55555544443
No 100
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=71.27 E-value=70 Score=30.23 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (325)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 147 (325)
...+.++.+..+|+++..++.+...+..+++..++....+..+...-
T Consensus 259 ~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~a 305 (445)
T PRK10644 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_pred CChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999888888888777777666666666554443
No 101
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=69.87 E-value=1e+02 Score=29.19 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHhHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 020541 42 SFSGAVFNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP~~f~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (325)
.....-+.+..-..|+|=|-.|-... ++| |+.+.+..++.++..-.-..+ +..+.+. ++.++++++--+.+..
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi---a~~~~~~-~~~~l~~~v~~~f~~i 79 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI---AVAKSGG-GIEDLASRVGPKFALI 79 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHhhcCC-CHHHHhcccCcHHHHH
Confidence 44556777888899999998886655 455 777777777777653322211 2222323 8989887765444443
Q ss_pred HH
Q 020541 119 LL 120 (325)
Q Consensus 119 ~~ 120 (325)
+.
T Consensus 80 f~ 81 (427)
T PF05525_consen 80 FT 81 (427)
T ss_pred HH
Confidence 33
No 102
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=68.17 E-value=1.1e+02 Score=29.07 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=44.0
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
..+..+..+|+++..++.+...+..+++..++....+..+...-++ |.++.+++
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ard-----g~lP~~f~ 319 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKD-----KLMPKYFG 319 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCccHHHH
Confidence 6778889999999999999999999999999999998888666543 44455554
No 103
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=67.94 E-value=1.1e+02 Score=28.83 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
....+.+..++..|+++..++++...+.++++..+.+...++.....-+ +|.++.+++
T Consensus 254 ~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ar-----dG~lP~~f~ 311 (435)
T PRK10435 254 SGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAAN-----DGNFPKVYG 311 (435)
T ss_pred CCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCccHHHH
Confidence 3456888889999999999999888888888777777777766654433 355556655
No 104
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=67.68 E-value=1e+02 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
..++..|..++-+||+..++..+...+.+.....+-..-.+.-+
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999988888888777776666555544
No 105
>PHA02764 hypothetical protein; Provisional
Probab=66.44 E-value=26 Score=31.59 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCCCCcHHHHHH-HHHHHhHhhhhchHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHH
Q 020541 37 GIDGASFSGAVF-NLSTTIVGAGIMALPATVKEL--GLIPGLIMIVLVGWLTESSIDMIMRFSRASK--SATYSGVVADA 111 (325)
Q Consensus 37 ~~~~~s~~~~~~-~l~~~~iG~giL~lP~~f~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~--~~~y~~l~~~~ 111 (325)
-.|..|.+.+++ ++-+...|.++ +.|+-+... |.- .+...++.++++...+.+..+...+.+ ..+|.- .+++
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY-ISRA 86 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY-IRTA 86 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE-hHHh
Confidence 356778888887 55555555543 545533333 322 334444555555555555555555432 223433 4788
Q ss_pred cChhHHHHHHHHHHHHHHH
Q 020541 112 FGGAGRALLQVCIVVNNLG 130 (325)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g 130 (325)
+||+.+.+.++...+....
T Consensus 87 FGP~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 87 FSSKFYTIFGISLWLTYVL 105 (399)
T ss_pred hCccHHHHHHHHHHHHHHh
Confidence 9999999988877765443
No 106
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=66.20 E-value=1.1e+02 Score=29.11 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=43.1
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
..+++++.+|+++..++.+...+..+++..+++...+..+...-++ |.++.+++
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard-----g~lP~~~~ 323 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD-----GLFPKIFG 323 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CChhHHHH
Confidence 7788899999999999999999999999999988888877666543 44455544
No 107
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=65.82 E-value=1.1e+02 Score=28.30 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=72.0
Q ss_pred CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHH-HHHH----HHHHHHHHhhcCCCCHHHHHHHH
Q 020541 38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWL-TESS----IDMIMRFSRASKSATYSGVVADA 111 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~-~~~t----~~~l~~~~~~~~~~~y~~l~~~~ 111 (325)
.|+.+-+-..+....+-++++ ..+=|-+-.+-|. |++.+..+-+- .+.+ ..-+.+..++++..+..|+-++-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~R 115 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFAR 115 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHH
Confidence 355566666777777777775 4566755556663 33333333332 2222 23334455677888999999888
Q ss_pred c-ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 020541 112 F-GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (325)
Q Consensus 112 ~-G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 145 (325)
+ ++...++..+..++...+...+..+-.+..++.
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~ 150 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLET 150 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5 678889999999999999999988888887743
No 108
>PRK10655 potE putrescine transporter; Provisional
Probab=62.70 E-value=1.4e+02 Score=28.11 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=40.9
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
....+..+..+|+++..++.+...+..+++..++....+..+...-+ ++.++.+++
T Consensus 258 ~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~-----dg~lP~~~~ 313 (438)
T PRK10655 258 APFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSAD-----EGYFPKIFS 313 (438)
T ss_pred chHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchhHHHH
Confidence 45677888899999998888888888888888887777776654443 244455554
No 109
>PRK09950 putative transporter; Provisional
Probab=59.77 E-value=1.1e+02 Score=29.61 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHhHhhhhchH----H-HHHHh--hC--------hHHHHHHHHHHHHHHHHHHHHHH-----H--HHhhc
Q 020541 42 SFSGAVFNLSTTIVGAGIMAL----P-ATVKE--LG--------LIPGLIMIVLVGWLTESSIDMIM-----R--FSRAS 99 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~l----P-~~f~~--~G--------~~~g~i~l~~~~~~~~~t~~~l~-----~--~~~~~ 99 (325)
|.++=+.-+.++-+|+|++.- | +.++. .| .-.+...-.+=+.+..|+.+.+. . ..++.
T Consensus 85 S~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~rk~ 164 (506)
T PRK09950 85 STLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVRKN 164 (506)
T ss_pred cchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445555667788899998743 3 22211 11 11122222222333333333332 2 12344
Q ss_pred CCCCHHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHH
Q 020541 100 KSATYSGVVADAFGG----AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLL 175 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (325)
+..+.++.++-++|+ +.+.++|++.++...+....-+-+....+..-+. ..++.+. +......++
T Consensus 165 ~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~----------~l~Gi~~-~~~~~~~ii 233 (506)
T PRK09950 165 KGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLS----------ALTGLPN-NFTVQAFVI 233 (506)
T ss_pred CCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHcCCCC-chHHHHHHH
Confidence 567899999999985 3468888888888777777666666655543332 2222111 111112222
Q ss_pred HHHHHhhcccccccc-chhhhhHHHHHHHHHHHH
Q 020541 176 TTLFVFLPLISFRRV-DSLRYTSALSVGLAIVFV 208 (325)
Q Consensus 176 ~~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~ 208 (325)
....+++-++....+ +.++++|.+...++..++
T Consensus 234 ~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll 267 (506)
T PRK09950 234 LLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFA 267 (506)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222244444544454 567777777765544443
No 110
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=58.25 E-value=1.8e+02 Score=28.16 Aligned_cols=103 Identities=9% Similarity=0.010 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHhHhhhhchH----H-HHHHh--hC--------hHHHHHHHHHHHHHHHHHHHHHHHHH------hhcC
Q 020541 42 SFSGAVFNLSTTIVGAGIMAL----P-ATVKE--LG--------LIPGLIMIVLVGWLTESSIDMIMRFS------RASK 100 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~l----P-~~f~~--~G--------~~~g~i~l~~~~~~~~~t~~~l~~~~------~~~~ 100 (325)
|.++=+.-+.++-+|+|++.- | +.++. .| .-.+...-.+=+.+..|+.+.+.... ++..
T Consensus 87 s~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~~~ 166 (504)
T PRK03356 87 STASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVRKM 166 (504)
T ss_pred cchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445556677788899998754 3 22211 12 11122222222334444444333222 2333
Q ss_pred C-CCHHHHHHHHcCh-----hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 020541 101 S-ATYSGVVADAFGG-----AGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (325)
Q Consensus 101 ~-~~y~~l~~~~~G~-----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 144 (325)
. .+.++.++-.+|+ +.+.++|++.++...+....-+-+....+.
T Consensus 167 p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~ 216 (504)
T PRK03356 167 DVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVT 216 (504)
T ss_pred CcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3 3789999999984 246888888888777776666655555553
No 111
>TIGR00930 2a30 K-Cl cotransporter.
Probab=58.02 E-value=2.5e+02 Score=29.70 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLN 149 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 149 (325)
+..++.+..++..+++..+.+...+..+..+..+
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArD 419 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKD 419 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888888888888877766553
No 112
>PRK11021 putative transporter; Provisional
Probab=57.78 E-value=1.6e+02 Score=27.48 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=35.0
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
....+..++.+|+++..++.+...+..+++..++....+..+...-+
T Consensus 246 ~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ar 292 (410)
T PRK11021 246 ASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAR 292 (410)
T ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667778889999988888888888888777777666666655544
No 113
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=57.11 E-value=1.1e+02 Score=29.15 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHHHhHhhhhchH----H-HHHHh--hCh----H-----HHHHHHHHHHHHHHHHHHHHHHH------Hh
Q 020541 40 GASFSGAVFNLSTTIVGAGIMAL----P-ATVKE--LGL----I-----PGLIMIVLVGWLTESSIDMIMRF------SR 97 (325)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~giL~l----P-~~f~~--~G~----~-----~g~i~l~~~~~~~~~t~~~l~~~------~~ 97 (325)
+-|.++=+.-+.++-+|+|++.- | +.+++ .|. . .+...-.+=+.+..|+.+.+... .+
T Consensus 36 efS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~r 115 (453)
T TIGR00842 36 EFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVR 115 (453)
T ss_pred CCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhhee
Confidence 33555556677788889988743 3 22211 111 1 12222222233444444443332 23
Q ss_pred hcCCCCHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 020541 98 ASKSATYSGVVADAFGGA----GRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (325)
Q Consensus 98 ~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 144 (325)
+.+..+.++.++-++|++ .+.++|++.++...+....-+-+....+.
T Consensus 116 k~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~ 166 (453)
T TIGR00842 116 KGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQIN 166 (453)
T ss_pred cCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445668889998888853 46788888877777666655555555553
No 114
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=55.67 E-value=1.9e+02 Score=27.51 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHhHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 020541 42 SFSGAVFNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP~~f~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (325)
..+..-+.+..-..|+|=|-.|-... ++| |..+.+..++.++..-.-.. . +..+.+ .++.++++++- |+-..
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgi--i-ava~~~-g~~~~l~~rv~-~~f~~ 83 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV--V-ALAKVG-GGVDSLSTPIG-KVAGV 83 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--H-HHhhcC-CCHHHHhhhcc-hHHHH
Confidence 56778888999999999998886655 456 77777766666654221111 1 112222 48888877765 44333
Q ss_pred HH
Q 020541 119 LL 120 (325)
Q Consensus 119 ~~ 120 (325)
++
T Consensus 84 ~f 85 (439)
T PRK15433 84 LL 85 (439)
T ss_pred HH
Confidence 33
No 115
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=54.12 E-value=62 Score=22.91 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=34.2
Q ss_pred hhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 020541 246 FPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDRT 302 (325)
Q Consensus 246 ~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~ 302 (325)
.|++..+-.|.....+..+.-.+|. +..|++. ...+...+-+++|++.|-.||.-+
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalS-ii~FIlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALS-VTCFIVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhcccC
Confidence 4555555555555567776655666 3334443 444555666778899999998333
No 116
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=52.55 E-value=2.2e+02 Score=27.21 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 102 ATYSGVVADAFGG-AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 102 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
..+.++.+..+|. ++..++.+...+..+++..+++...+..+...-+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 336 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSR 336 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888887 7777788888888888888888777777755544
No 117
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=51.33 E-value=2.1e+02 Score=26.84 Aligned_cols=57 Identities=7% Similarity=0.050 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 101 SATYSGVVADAFGG--AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 101 ~~~y~~l~~~~~G~--~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
.....+..+..+|. +...++.+...+..+++..+.+...+..+...-+ +|.++.+++
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ar-----dg~lP~~~~ 317 (442)
T TIGR00908 259 NNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSR-----AGYLPESLS 317 (442)
T ss_pred cchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHH
Confidence 45777888888874 4445555555555555555555555555544433 244455554
No 118
>PRK11387 S-methylmethionine transporter; Provisional
Probab=51.22 E-value=2.3e+02 Score=27.05 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (325)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (325)
...+.++.++..|+++..++.+...+..+++..+.+...+..+...-++ |.++.+++
T Consensus 274 ~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ard-----g~lP~~f~ 330 (471)
T PRK11387 274 KSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNE-----GTLPACFA 330 (471)
T ss_pred CChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----CCcCHHHH
Confidence 4578888899889999999999999999988888887777766555443 34455554
No 119
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=50.99 E-value=2.4e+02 Score=27.27 Aligned_cols=160 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHH-----HHHHh------hC----hHHHHHHHHHHHHHHHHHHHHHHH------HH
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALP-----ATVKE------LG----LIPGLIMIVLVGWLTESSIDMIMR------FS 96 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP-----~~f~~------~G----~~~g~i~l~~~~~~~~~t~~~l~~------~~ 96 (325)
+.+-|.++=+..+..+.+|+|++.-. +.+.+ .+ ...+.....+=+.+..|+.+.+.. +.
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y 151 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFY 151 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeee
Confidence 44456777778888899999987543 22222 11 111222222222233333332222 12
Q ss_pred hhcCCCCHHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHH
Q 020541 97 RASKSATYSGVVADAFGG----AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTL 172 (325)
Q Consensus 97 ~~~~~~~y~~l~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (325)
++.+..+.++..+-.+|+ +.+.++|++.++...+....-+-+....+..-++ ..++.+. +.....
T Consensus 152 ~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~----------~~~Gi~~-~~~~~~ 220 (485)
T PF02028_consen 152 NKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLS----------SLFGIPN-TFGLQI 220 (485)
T ss_dssp TS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCTSSS-THHHHH
T ss_pred ecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH----------HHcCCCC-chHHHH
Confidence 233444556655665653 4467888888887777766666555555533332 2222110 111112
Q ss_pred HHHHHHHHhhcccccccc-chhhhhHHHHHHHHHHHH
Q 020541 173 LLLTTLFVFLPLISFRRV-DSLRYTSALSVGLAIVFV 208 (325)
Q Consensus 173 ~~i~~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~ 208 (325)
.++....++.-++....+ +.++++|.+...+....+
T Consensus 221 ~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 221 IIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222222233334444444 347777777765444443
No 120
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=50.80 E-value=12 Score=35.80 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=39.8
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 020541 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLN 149 (325)
Q Consensus 103 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 149 (325)
.+.+..+...+++...++++..+...+++..+.+...+..+..+-.+
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 57778888888999999999999999999999988888888666543
No 121
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=50.80 E-value=13 Score=36.38 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=54.0
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (325)
-.|+.-++...+.++.+.+|++ ++.+|-...+-|.-.....+.....+- ...++.+-...+.+..+-.|-.++.||+.
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~-~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~~ 121 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVL-LLGWIFIPVFYRLGVTTMYEYLEKRFGGR 121 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHH-hhheEEEEEEEecCeeehhHHHHHHhccc
Confidence 3567788888899999999886 779997777777443222111111100 00000111111335556666678888888
Q ss_pred HHHHHHHHHHHHHHH
Q 020541 116 GRALLQVCIVVNNLG 130 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g 130 (325)
.+....+..+++.+-
T Consensus 122 ~r~l~~l~f~l~~~~ 136 (585)
T KOG2349|consen 122 VRYLATLSFILMIFL 136 (585)
T ss_pred chhhHHHHHHHHHHh
Confidence 777776666665553
No 122
>COG4709 Predicted membrane protein [Function unknown]
Probab=48.32 E-value=1.6e+02 Score=24.39 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE-LGLIPGLIMIVLVGWLTESSIDMIMRFSRAS 99 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~ 99 (325)
++..-+..+++.++. |.|++..|...-- .|.+..++.+++.+.....+...+.-..-..
T Consensus 72 ~~~~~n~~~aii~~~----~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~agil~ 131 (195)
T COG4709 72 KPTQKNVRRAIIALI----GLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILG 131 (195)
T ss_pred cCcccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666554 5666666655432 2444444445555555555555555444433
No 123
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=46.14 E-value=2.6e+02 Score=26.31 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=31.4
Q ss_pred CCHHHHHHHH--cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 102 ATYSGVVADA--FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 102 ~~y~~l~~~~--~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
....+..+.. +|+++..++.+...+..+++..++....+..+...-+
T Consensus 264 ~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ar 312 (445)
T PRK11357 264 TPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAK 312 (445)
T ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 3466776664 7888777777777777777777776666655554443
No 124
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=44.00 E-value=78 Score=20.14 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=23.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 020541 269 PTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL 303 (325)
Q Consensus 269 p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~ 303 (325)
|+.+. -+.+-.+++.++|+++|+.-+..+.+...
T Consensus 19 ~NsF~-fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 19 PNSFW-FVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 44443 44455678899999999988776655443
No 125
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=42.86 E-value=1.4e+02 Score=22.52 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhHhhhhchHHHHHHhh---ChHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCCCHHHH
Q 020541 42 SFSGAVFNLSTTIVGAGIMALPATVKEL---GLIPGLIMIVLVGWLTE----SSIDMIMRFSRASKSATYSGV 107 (325)
Q Consensus 42 s~~~~~~~l~~~~iG~giL~lP~~f~~~---G~~~g~i~l~~~~~~~~----~t~~~l~~~~~~~~~~~y~~l 107 (325)
.+...+..+.-..+|+..+.+....... |-..-...+++.|+++. |-..++..+.+..+..+|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 3555555555566677766666443322 21222333444455543 445566666666677777765
No 126
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=42.02 E-value=25 Score=21.37 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 020541 276 VRTSITLCSTVYITTSFFGLLLFGDRT 302 (325)
Q Consensus 276 ~~~~~~~~~~~y~~~g~~gy~~fG~~~ 302 (325)
...+..+..++..+.|...|.+||...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 345555666666666777788888543
No 127
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=41.84 E-value=3.1e+02 Score=25.93 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHhHhhhhchHHHHH-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHHHcChh
Q 020541 40 GASFSGAVFNLSTTIVGAGIMALPATV-KELGLIPGLIMIVLVGWLTESSIDMIMRFSRA---SKSATYSGVVADAFGGA 115 (325)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~giL~lP~~f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~~y~~l~~~~~G~~ 115 (325)
........+....+-+|.|-.+--... ++-||-..+++++ ..+..+ .+-+...| -..++..|.+++.++|+
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill--s~l~~~---~~Q~~~arLgivTG~~laq~ir~~y~~~ 90 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL--SNLMAY---ILQELSARLGIVTGKGLAEAIRERYLPG 90 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 345555556666666666655544222 2345443333222 222222 22222222 14678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
..++.-+...+....+.++-.+-.+--+
T Consensus 91 ~~~~~~~~~~i~~~at~iae~~G~aial 118 (416)
T COG1914 91 LGILLWILAEIAGIATDIAEVAGIAIAL 118 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888887777666555
No 128
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=41.50 E-value=3.3e+02 Score=26.16 Aligned_cols=42 Identities=5% Similarity=-0.066 Sum_probs=30.2
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 106 GVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
+..+..+| ++..++.+...+..+++..+.+...+..+....+
T Consensus 308 ~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ar 349 (501)
T TIGR00911 308 DFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGR 349 (501)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677 6667777888888888888888777777765544
No 129
>PRK09928 choline transport protein BetT; Provisional
Probab=40.93 E-value=2.5e+02 Score=28.38 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHHhHhhhhchH----H-HHHHh--hC---h----HHHHHHHHHHHHHHHHHHHHHHHHH------hhc
Q 020541 40 GASFSGAVFNLSTTIVGAGIMAL----P-ATVKE--LG---L----IPGLIMIVLVGWLTESSIDMIMRFS------RAS 99 (325)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~giL~l----P-~~f~~--~G---~----~~g~i~l~~~~~~~~~t~~~l~~~~------~~~ 99 (325)
.-|.++=+.-+.++-+|.|++.- | +.+.. .| - -.+...-.+=+.+..|+.+.++... ++.
T Consensus 92 efS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~ 171 (679)
T PRK09928 92 EFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYN 171 (679)
T ss_pred CCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 33555556777889999998743 3 22211 12 1 1223333333444455544444332 233
Q ss_pred CCCCHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 100 KSATYSGVVADAFGGA----GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
...+.++.++-++|++ .+.++|++.++...+....-+-+....+
T Consensus 172 ~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi 219 (679)
T PRK09928 172 LPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQL 219 (679)
T ss_pred CCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888753 4567777777766666655555544444
No 130
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=40.76 E-value=30 Score=21.30 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 273 KSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
..+..++..+..++.-+.|..-|-+||..
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34555666666666666666667788865
No 131
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=38.03 E-value=93 Score=29.87 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541 113 GGAGRALLQVCIVVNNLGMLVVYM-IIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (325)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~-i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~ 191 (325)
+|.|.+++.+...+.+++..++-- +..+.-+.. +++.+..- ....+++.++ .+.+.|--++++=+
T Consensus 340 ~RAgvFfi~~~f~laql~~NISan~vaagnDl~~----------L~PkyinI---rRG~~~~a~i-a~a~~PWnll~SSs 405 (572)
T KOG2466|consen 340 ARAGVFFIGFGFALAQLGTNISANSVAAGNDLSA----------LLPKYINI---RRGALICAII-AWAICPWNLLSSSS 405 (572)
T ss_pred cchhhhHHHHHHHHHHHhcchhccccccchhhHh----------hCcceEEe---cccHHHHHHH-HHHhCchHHhcccc
Confidence 457888888888888887666442 222333322 22333321 1223444444 45788876665544
Q ss_pred h-hhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCC---CCcccc----chhhhhhhhhhhhhhhhhhhhhhchhHH
Q 020541 192 S-LRYTSALSVGLAIVFVVITAGVAIVKTID-GSISMPC---LLPEIS----KQASFWKLFTTFPVLVTAYICHHNIHPI 262 (325)
Q Consensus 192 ~-l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~p~~~----~~~~~~~~~~~~~i~~faf~~~~~~~~i 262 (325)
+ +..++.++++++.+ ..+.++-|...+ +...-.+ ..|.-. ...++. .++++-.+..+++|.+
T Consensus 406 ~F~t~LssysvfLspi---agViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~NwR------A~vA~vcG~~P~lpG~ 476 (572)
T KOG2466|consen 406 KFLTALSSYSVFLSPI---AGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINWR------AFVAYVCGMAPNLPGF 476 (572)
T ss_pred HHHHHHHHHHHHHhhc---cceEeehhheeecceeeeeeeeecCCCceeeeecCccHH------HHHHHHhccccCCcch
Confidence 3 45556666544432 233333444442 2211111 101110 111222 3446777788999998
Q ss_pred HhhcCCCcchh--------HHHHHHHHHHHHHHHHHHH
Q 020541 263 ENELKDPTQIK--------SIVRTSITLCSTVYITTSF 292 (325)
Q Consensus 263 ~~~m~~p~~~~--------~~~~~~~~~~~~~y~~~g~ 292 (325)
..+..+..+.+ .....++.++++.|..+..
T Consensus 477 a~~V~~~~~v~~G~~~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 477 AGSVGADIKVPDGAVKLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred hhhcCcccccccceEEEEechHHHHHHHHHHHHHHHHh
Confidence 88876433332 3677888888888877654
No 132
>CHL00020 psbN photosystem II protein N
Probab=36.42 E-value=25 Score=21.28 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 275 IVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 275 ~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
+..++..+..++.-+.|..-|-+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 344555555555566666667778865
No 133
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=35.35 E-value=4.6e+02 Score=26.05 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=49.8
Q ss_pred CCCCcHHHHHHHHHHHhHhhh-hchHHHHH-HhhCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541 38 IDGASFSGAVFNLSTTIVGAG-IMALPATV-KELGL---IPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAF 112 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f-~~~G~---~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (325)
+.-.+..+.....+...++.| +=-.||-- +.+|+ ++=.+++++.|.=..|-=..+.+.+++....-.+.+|-..-
T Consensus 79 ~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~ 158 (629)
T KOG3659|consen 79 PTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALK 158 (629)
T ss_pred CcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhc
Confidence 334577888888888888888 44778544 44553 45566777777766666666677666665555666665554
Q ss_pred C
Q 020541 113 G 113 (325)
Q Consensus 113 G 113 (325)
|
T Consensus 159 G 159 (629)
T KOG3659|consen 159 G 159 (629)
T ss_pred C
Confidence 4
No 134
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.20 E-value=1.9e+02 Score=21.66 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATY 104 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y 104 (325)
.++.|.-.......-+....-++++|.+....+|......+++..++.....--.++-.++.+-++|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 4566666555555545544457788877766678877776666666655554444444444444443
No 135
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=33.98 E-value=4.4e+02 Score=25.46 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 147 (325)
++...++.+...+..++...+.+...+..+....
T Consensus 280 ~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~a 313 (507)
T TIGR00910 280 EWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAA 313 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666666555555554443
No 136
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=33.91 E-value=2.8e+02 Score=27.62 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=38.7
Q ss_pred HhHhhhhchHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541 53 TIVGAGIMALPATV--KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 53 ~~iG~giL~lP~~f--~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (325)
.....++..+...+ .+..++..++.+++..+++....++..+... ++...+..+.+.+.|-.
T Consensus 365 ~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~~~~~~~sqli~g~~ 428 (624)
T PF03169_consen 365 VSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPVSGLNILSQLIFGLL 428 (624)
T ss_pred HHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-CcchhhhHHHHHHHHHH
Confidence 34445667777777 4566666666677766676666666666555 44555666666666543
No 137
>PHA03048 IMV membrane protein; Provisional
Probab=30.52 E-value=1.7e+02 Score=20.86 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=35.6
Q ss_pred hhhhhhhhhhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Q 020541 246 FPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDD 305 (325)
Q Consensus 246 ~~i~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~ 305 (325)
.|++..+-.|.....+..+. +++.+..|++.. ..+...+-+++|++-|-.||....++
T Consensus 17 ~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsi-i~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 17 GGIILLAASCIFAFVDFSKN-KATVTVWRALSG-IAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 45555555555555676666 433344454443 44455566788999999999665543
No 138
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=27.01 E-value=5.5e+02 Score=24.38 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=21.7
Q ss_pred HHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 020541 109 ADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (325)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~ 146 (325)
+...+++...+..+...+..++...+++...+..+...
T Consensus 273 ~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ 310 (474)
T TIGR03813 273 HWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAV 310 (474)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334566666666666666666666655555544433
No 139
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=26.94 E-value=5.4e+02 Score=24.22 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=36.0
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 103 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
.+.+..++..+++++.++.+...+..+++..+.+...+..+....+
T Consensus 272 p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ar 317 (452)
T TIGR01773 272 SYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAE 317 (452)
T ss_pred cHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777788999999888888888888888777777765554
No 140
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=26.75 E-value=5.3e+02 Score=24.08 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 020541 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLG 130 (325)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g 130 (325)
..++..|++++-++|+.++..-+...+...+
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~ 92 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIA 92 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 4678999999999988776555444444433
No 141
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=26.34 E-value=5.7e+02 Score=24.29 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhccccccccchh--hhhHH-HHHHHHHHHHHHHHHHHHHHhccCCCCC-CCCCccccchhhhhhhhhhhh
Q 020541 172 LLLLTTLFVFLPLISFRRVDSL--RYTSA-LSVGLAIVFVVITAGVAIVKTIDGSISM-PCLLPEISKQASFWKLFTTFP 247 (325)
Q Consensus 172 ~~~i~~~~i~~pl~~~~~l~~l--~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~ 247 (325)
.+....-++++|+...++-+.+ +++.. ++.-+-++.+.+++. +...++.+-... ....| ++.+.+..+-
T Consensus 171 yl~tlAG~iLLpFGg~~wTsf~Aek~lg~Vis~GiKLmVLalIVG-IG~tlf~~~~~~~~~~~p------tl~e~~~i~l 243 (440)
T PRK13875 171 KLTTLAGFVLIPFALFGKTAFLAERVLGNVVSSGIKVLVLAVIVG-IGSTLFSQFTAGFGGAEP------TIDDAMAIVL 243 (440)
T ss_pred HHHHhhHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhccCCCC------CHHHHHHHHH
Confidence 3444555688998877666554 44443 232222222222222 222222221110 01112 2233333333
Q ss_pred hhhhhhhhhhchhHHHhhcC--CCc-chhHHHHHHHHHH
Q 020541 248 VLVTAYICHHNIHPIENELK--DPT-QIKSIVRTSITLC 283 (325)
Q Consensus 248 i~~faf~~~~~~~~i~~~m~--~p~-~~~~~~~~~~~~~ 283 (325)
..+.-+.....+|++.+.+- .|+ --..+...+....
T Consensus 244 aal~ll~L~~~~P~iAsGLVsG~PqLgaGaa~gt~~~~~ 282 (440)
T PRK13875 244 AALSLLGLGIFGPGIANGLVSGAPQLGAGAAVGTGLAAG 282 (440)
T ss_pred HHHHHHHHHHhCcHHHHHhhcCCCccchHHHHHHHHHHH
Confidence 33333445566899988876 444 2233444443333
No 142
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=25.92 E-value=5.9e+02 Score=24.38 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=18.1
Q ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020541 110 DAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140 (325)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~ 140 (325)
..+|.+...++++......+++........+
T Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (496)
T PRK15238 310 LTLGVWFARITGLSMFLAYTGAFFTLSYSPL 340 (496)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445666666677777666666655543333
No 143
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=24.75 E-value=2.1e+02 Score=20.48 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=34.2
Q ss_pred hhhhhhhhhhhhchhHHHhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 020541 246 FPVLVTAYICHHNIHPIENELKDPTQ-IKSIVRTSITLCSTVYITTSFFGLLLFGDRT 302 (325)
Q Consensus 246 ~~i~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~ 302 (325)
.|++..+..|.....+..+.=+ |.. ..|++. ...+...+-+++|.+-|-.||...
T Consensus 17 ~GiiLL~~aCIfAfidfsK~~~-~~~~~wRalS-ii~FI~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 17 GGIILLIAACIFAFIDFSKNTK-PTDYTWRALS-IICFILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHhhhhccCCC-CchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4666666666666666666533 443 344433 344555566788888899998765
No 144
>PRK10238 aromatic amino acid transporter; Provisional
Probab=24.53 E-value=6.1e+02 Score=24.01 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
...+.++.+...+++...++++..+...+++..+.+...+..+...-+
T Consensus 268 ~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ar 315 (456)
T PRK10238 268 TSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQ 315 (456)
T ss_pred CCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777778888888888888888888887777777755544
No 145
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=23.69 E-value=4.1e+02 Score=21.68 Aligned_cols=63 Identities=8% Similarity=-0.050 Sum_probs=40.2
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKEL--GLIPGLIMIVLVGWLTESSIDMIMRFSRASK 100 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~ 100 (325)
.++.+.++++..+.-+-+=-++=+.|.++... .+..=+..+++.-.+..++...+.+..++++
T Consensus 91 ~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p 155 (176)
T TIGR03717 91 KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRFP 155 (176)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888877777666655555666555432 3444445555555677777888888877774
No 146
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=23.16 E-value=6.5e+02 Score=23.86 Aligned_cols=46 Identities=7% Similarity=-0.045 Sum_probs=33.9
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 103 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
.+....+...++++..++.+..++..+++..+++...+..+...-+
T Consensus 276 p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ar 321 (478)
T TIGR00913 276 PFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAH 321 (478)
T ss_pred cHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444445555578888999999999999988888877777765544
No 147
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=21.84 E-value=3e+02 Score=21.13 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHhhhhchHHHHHHhhChHH
Q 020541 43 FSGAVFNLSTTIVGAGIMALPATVKELGLIP 73 (325)
Q Consensus 43 ~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~ 73 (325)
-++-......+.+=.|-+++|..++++|.+.
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~ 95 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIG 95 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhh
Confidence 3334444444555578899999999998654
No 148
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=21.84 E-value=85 Score=22.17 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=25.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541 261 PIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (325)
Q Consensus 261 ~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~ 300 (325)
.+-++++++.+-++.+.++.+.+++.-++.+..||..|-.
T Consensus 41 ~~d~~i~kK~k~kK~iiiS~i~s~lalli~~~~G~g~y~~ 80 (84)
T PF09716_consen 41 KIDDKIEKKKKNKKKIIISTIASGLALLIATALGYGYYKK 80 (84)
T ss_pred hhhHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566555556666666666666667788888887743
No 149
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=21.71 E-value=6.6e+02 Score=23.40 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
..+.+......|+++..++.+...+.++++..++....+..+...-+
T Consensus 272 ~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ar 318 (466)
T COG0531 272 APLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMAR 318 (466)
T ss_pred ccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888889999999999999999999999998888887766655
No 150
>PLN00151 potassium transporter; Provisional
Probab=21.70 E-value=8e+02 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=12.3
Q ss_pred hhhhhhhhhhhhhhchhH
Q 020541 244 TTFPVLVTAYICHHNIHP 261 (325)
Q Consensus 244 ~~~~i~~faf~~~~~~~~ 261 (325)
..+|-.+.+|.||.....
T Consensus 382 ~V~P~LlL~Y~GQaA~L~ 399 (852)
T PLN00151 382 LVLPCLLLAYMGQAAYLM 399 (852)
T ss_pred hHHHHHHHHHcchHHHHh
Confidence 346777778888776654
No 151
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=21.62 E-value=4.6e+02 Score=21.92 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=13.9
Q ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 020541 65 TVKELGLIPGLIMIVLVGWLTESSIDMIMR 94 (325)
Q Consensus 65 ~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~ 94 (325)
.+.........+...++..+..+....+.+
T Consensus 150 ~~~g~~~~~~~~~igivs~i~~~~G~~lG~ 179 (206)
T TIGR02840 150 SLLGLNPLATSILVAVMSFIFVSLGLFLGK 179 (206)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555555555543
No 152
>PHA02898 virion envelope protein; Provisional
Probab=21.38 E-value=2.8e+02 Score=19.78 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=35.6
Q ss_pred hhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhh
Q 020541 246 FPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL 307 (325)
Q Consensus 246 ~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il 307 (325)
.|++..+-.|.....+..+.=+ |. +..|++.. ..+...+-+++|++-|-.||....++..
T Consensus 17 ~GIiLL~~ACIfAfidfSK~~~-~~~~~wRalSi-i~FIlgivl~lG~~ifs~y~r~C~~~~~ 77 (92)
T PHA02898 17 FGIILLIVACICAYIELSKSEK-PADSALRSISI-ISFILAIILILGIIFFKGYNMFCGGNTT 77 (92)
T ss_pred HHHHHHHHHHHHheehhhcCCC-cchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 4555555555555566666533 53 44444443 4445556678899999999876655443
No 153
>PRK10836 lysine transporter; Provisional
Probab=21.36 E-value=7.2e+02 Score=23.73 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=34.4
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 020541 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLN 149 (325)
Q Consensus 103 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 149 (325)
.+....+...++++..++.+..++..+++..+.+...+..+...-++
T Consensus 283 p~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ard 329 (489)
T PRK10836 283 PFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACD 329 (489)
T ss_pred cHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45556566556677888888888888888888888888777665543
No 154
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.04 E-value=4.3e+02 Score=23.06 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020541 76 IMIVLVGWLTESSIDMIMRFS 96 (325)
Q Consensus 76 i~l~~~~~~~~~t~~~l~~~~ 96 (325)
+.-..+|++..-|...++.|.
T Consensus 223 vFs~f~GIfltSt~~F~~Y~~ 243 (254)
T PF07857_consen 223 VFSHFSGIFLTSTVYFVIYCI 243 (254)
T ss_pred eHHHHhhHHHHHHHHHHHHHH
Confidence 334444555555555555444
No 155
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=20.95 E-value=1.1e+02 Score=24.68 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHhHhhhhchHHHHHHh
Q 020541 39 DGASFSGAVFNLSTTIVGAGIMALPATVKE 68 (325)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~~ 68 (325)
+..-+..+..+-+...+|.-+--+|+.+..
T Consensus 85 ~~~p~~aAl~sgls~~~g~liPllp~~~~~ 114 (169)
T TIGR00267 85 RRRVYMSGFIDGFSTFMGSFVPVLPFLVFD 114 (169)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444566677788888888877788887633
No 156
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=20.68 E-value=2.5e+02 Score=22.63 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhc
Q 020541 285 TVYITTSFFGLLLF 298 (325)
Q Consensus 285 ~~y~~~g~~gy~~f 298 (325)
++|.++|+.+|+.+
T Consensus 55 vLy~l~~iSa~lvW 68 (161)
T COG3476 55 VLYALIGISAYLVW 68 (161)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555555
No 157
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=20.53 E-value=7.2e+02 Score=23.40 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=38.2
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 020541 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLN 149 (325)
Q Consensus 103 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 149 (325)
.+....+...++++..++++...+..+++.-+++...+..+...-++
T Consensus 252 ~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ard 298 (446)
T PRK10197 252 SYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRR 298 (446)
T ss_pred cHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677778888999999999988999999988888888877666543
Done!