Query 020541
Match_columns 325
No_of_seqs 108 out of 1123
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 2E-13 7E-18 127.6 25.0 244 37-301 6-253 (445)
2 3gia_A Uncharacterized protein 99.4 2.3E-11 8E-16 113.6 24.1 241 37-299 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.2 4.2E-09 1.4E-13 100.0 21.9 245 37-301 9-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.3 5.7E-05 1.9E-09 71.3 20.6 110 37-147 23-133 (501)
5 3dh4_A Sodium/glucose cotransp 97.5 0.02 6.7E-07 54.3 22.1 149 37-205 18-168 (530)
6 2xq2_A Sodium/glucose cotransp 96.9 0.14 4.9E-06 49.1 21.2 147 38-204 48-196 (593)
7 2a65_A Leutaa, Na(+):neurotran 95.7 0.69 2.4E-05 43.4 17.6 260 37-299 5-307 (519)
8 3l1l_A Arginine/agmatine antip 79.1 20 0.00069 32.2 11.7 48 101-148 259-306 (445)
9 4djk_A Probable glutamate/gamm 65.6 81 0.0028 28.7 13.1 35 114-148 287-321 (511)
10 4ain_A Glycine betaine transpo 48.1 96 0.0033 29.0 9.4 105 38-143 93-221 (539)
11 2wsw_A BCCT family betaine/car 46.0 1.2E+02 0.0043 28.0 9.8 22 41-62 91-112 (509)
12 3gia_A Uncharacterized protein 44.1 1.7E+02 0.0058 25.9 15.5 47 102-148 258-304 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.61 E-value=2e-13 Score=127.60 Aligned_cols=244 Identities=13% Similarity=0.090 Sum_probs=164.5
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G~~ 115 (325)
++|+.+.++.++..+++++|+|++.+|....+.|. .+++..++.++..........|...+.+.. +.-+..++.+||+
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 84 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF 84 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence 67899999999999999999999999988888886 478888888999999999999988887544 6778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
..++.++...+........+....++.+...++. . ...+ ....+.+. +++++-....+..+...+
T Consensus 85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~---~~~~~~~~-~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------L-KDPW---VLTITCVV-VLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------G-GSHH---HHHHHHHH-HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------c-cccH---HHHHHHHH-HHHHHHHHHHhchHHHHH
Confidence 9999999999988877888888888877544321 0 0000 11111111 111222222334444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc--chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (325)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~ 272 (325)
+..+...+.+..+++. .+......+. ....+.+. ...++.++..++...+|+|.+........+|+|||+ +.
T Consensus 150 ~~~~~~~~~i~~~~~~---~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i 224 (445)
T 3l1l_A 150 VQAVATVLALIPIVGI---AVFGWFWFRG--ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV 224 (445)
T ss_dssp HHHHHHHHHHHHHHHH---HHTTSTTCCC--CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhCh--hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc
Confidence 4443332222222211 1111111111 11111111 112356788889999999999999999999999997 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 273 KSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
+|++..+.....++|++..+......+.+
T Consensus 225 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 225 PIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999888777643
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.45 E-value=2.3e-11 Score=113.58 Aligned_cols=241 Identities=11% Similarity=0.109 Sum_probs=158.1
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcCh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGG 114 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~ 114 (325)
++|+.+.++.++..+++++|+|++..| .+...+|. .+++..++.+++.......+.|...+.+. ...-+..++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 678999999999999999999999888 55566676 67888888899999999999999888755 4577888999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 115 AG-RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 115 ~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
+. ...+.+...+........+....++.+...++.. ...+ ... .+. ..+++++-....+..+..
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~--~~~-~~~-~~~~~~~~~in~~g~~~~ 147 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP-----------INTF--NIA-ITE-IGIVAFFTALNFFGSKAV 147 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------CCHH--HHH-HHH-HHHHHHHHHHHHHTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CchH--HHH-HHH-HHHHHHHHHHHHHhHHHH
Confidence 62 2334566666666666777777777775444210 0000 011 111 111122222223344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (325)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~ 272 (325)
.++..+...+.+..+++.++..+... +. .+..|... ..++.+++.++....++|.+.+.+....+|+|||+ +.
T Consensus 148 ~~~~~~~~~~~i~~~~~~ii~~~~~~-~~----~~~~~~~~-~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~i 221 (444)
T 3gia_A 148 GRAEFFIVLVKLLILGLFIFAGLITI-HP----SYVIPDLA-PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNV 221 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-CG----GGTSCCCS-HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-Ch----hhcCCCCC-CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccch
Confidence 44444443222222222222222221 11 11222111 13456788888999999999999999999999998 58
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541 273 KSIVRTSITLCSTVYITTSFFGLLLFG 299 (325)
Q Consensus 273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG 299 (325)
||++..+....+++|++..+......+
T Consensus 222 p~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 222 PRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999887776654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.16 E-value=4.2e-09 Score=100.02 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=140.7
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHh--hcCCCCHHHHHHHHcC
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSR--ASKSATYSGVVADAFG 113 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~--~~~~~~y~~l~~~~~G 113 (325)
.+|+.+.++.+...++.++| +..+|. ....|.. +++..++.+++. ......+.|... ..+....-..+++.+|
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~g 84 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLG 84 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHHC
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhcC
Confidence 67899999999999999986 667775 4566643 333333333333 236777788777 6555567778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l 193 (325)
|+.+++..+...+.......++....++.+...+.. +......| ... .+.+.. ++++-+...+..+..
T Consensus 85 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~~~~~--~~~-~~~~~~-~~~~~~in~~g~~~~ 152 (511)
T 4djk_A 85 PRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW--------PALNEDPI--TKT-IAALII-LWALALTQFGGTKYT 152 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC--------GGGTSCSS--HHH-HHHHHH-HHHHHHHHHTCSSSH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cccccCcH--HHH-HHHHHH-HHHHHHHHHhChHHH
Confidence 999999999888887776666666666655333200 11111111 111 111111 111112222333444
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHhccCCC-----CCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541 194 RYTSALSVGLAIV-FVVITAGVAIVKTIDGSI-----SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (325)
Q Consensus 194 ~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~ 267 (325)
.++..+...+.++ .+++.+...+.....+.. +.....|+.. ..+...++...+++|.|........+|+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 153 ARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFS----KVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp HHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTT----STTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcc----cchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 4444333211111 112222222222222211 1111122211 12334567778999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (325)
Q Consensus 268 ~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~ 301 (325)
||+ +.||++..++.+.+++|++..+......+++
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 998 7899999999999999999999887777653
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.34 E-value=5.7e-05 Score=71.34 Aligned_cols=110 Identities=6% Similarity=-0.092 Sum_probs=82.3
Q ss_pred CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE-LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (325)
++|+.+.++-+..-.+..++.+.+.+...+.. .++..+++.+++..++......+......+.+. ++..+.+..||++
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl-~~~v~~R~~FG~~ 101 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI-NFTVAARMPFGIR 101 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC-CHHHHTTTTSCTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC-ChhhhhHhhcchh
Confidence 45667888888888888777777766644443 346777777777666666666666666666644 4999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (325)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 147 (325)
|.++..+...+.++|-........++.+..++
T Consensus 102 Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~ 133 (501)
T 2jln_A 102 GSLIPITLKALLSLFWFGFQTWLGALALDEIT 133 (501)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888775443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.53 E-value=0.02 Score=54.33 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=83.9
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (325)
-.|+.+.+...+.+..+.+++. ++.+|-...+.|+........ .++........+....++.+..|..|..++.||++
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~ 96 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKK 96 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcH
Confidence 4688899999999999998885 679996666777542211111 11111122333445556778999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541 116 GRALLQVCIVVN-NLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (325)
Q Consensus 116 ~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~ 194 (325)
.+.+..+...+. .+..+.+.+...+..++.++ +- ......++..+++........++...
T Consensus 97 ~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi-----~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 97 LKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GI-----PLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TC-----CHHHHHHHHHHHHHHTTC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC-----CHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 988877665432 22222222222333332221 11 11122333344556677778888888
Q ss_pred hhHHHHHHHHH
Q 020541 195 YTSALSVGLAI 205 (325)
Q Consensus 195 ~~s~~~~~~~~ 205 (325)
+...+-.++.+
T Consensus 158 ~TD~iQ~~im~ 168 (530)
T 3dh4_A 158 WTDVIQVFFLV 168 (530)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887765433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.92 E-value=0.14 Score=49.08 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=79.0
Q ss_pred CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 020541 38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (325)
.|+.+.+.....+..+.+++. ++.+|-.-.+.|+........ .++........+..-.++.+..|..|..++.|||+.
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~ 126 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKL 126 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCch
Confidence 477789999999988888775 669996666677532211111 111111122334455567789999999999999998
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541 117 RALLQVCIVV-NNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (325)
Q Consensus 117 ~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~ 195 (325)
+.+..++..+ +.+......+...+..++.++ +.+ .....++..+++........++...+
T Consensus 127 ~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------------Gi~-----~~~~i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 127 KTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIP-----LMYSILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------------CCC-----HHHHHHHHHHHHHHHHHTTC---CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------Ccc-----HHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 8777665443 222222222333344442222 111 11222233335555666677777777
Q ss_pred hHHHHHHHH
Q 020541 196 TSALSVGLA 204 (325)
Q Consensus 196 ~s~~~~~~~ 204 (325)
...+..++.
T Consensus 188 TD~iQ~iim 196 (593)
T 2xq2_A 188 TDVIQVFFL 196 (593)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.70 E-value=0.69 Score=43.41 Aligned_cols=260 Identities=15% Similarity=0.126 Sum_probs=116.6
Q ss_pred CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 020541 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELG----LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADA 111 (325)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G----~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~ 111 (325)
+++=.|..+-++..+++.+|.| +-=.||...+-| .++=++.++++|+=..+.=..+.+...+..+.+-.+.-+++
T Consensus 5 R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l 84 (519)
T 2a65_A 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL 84 (519)
T ss_dssp CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHh
Confidence 3455588899999999999999 889998877765 33333444444443333333344433323333433343444
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccccc-CccCCCcch------hhhc----cc-----ccch
Q 020541 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS-------GAWLN-GVHHSGVTE------EWFG----QH-----WWTT 168 (325)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~-------~~~~~-~~~~~~~~~------~~~~----~~-----~~~~ 168 (325)
..++....++...++..+....-|.++.+-.+. .-++. -..+..-.. ++++ .+ ...-
T Consensus 85 ~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~ 164 (519)
T 2a65_A 85 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKP 164 (519)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCC
T ss_pred cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCc
Confidence 333222334444444444333334333333221 11110 000000000 1211 00 0000
Q ss_pred h-HHHHHHHHHHHhhcccccccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC----C-CC--CCCCccccchhhh
Q 020541 169 R-FTLLLLTTLFVFLPLISFRRV-DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGS----I-SM--PCLLPEISKQASF 239 (325)
Q Consensus 169 ~-~~~~~i~~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~--~~~~p~~~~~~~~ 239 (325)
+ ........+.++.-++..|.+ +...+.+.+...+..+.+++ +.++...-++ . +. --..|+++...+.
T Consensus 165 ~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vllii---L~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~ 241 (519)
T 2a65_A 165 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVF---LVIRVFLLETPNGTAADGLNFLWTPDFEKLKDP 241 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHH---HHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCH
Confidence 1 111111222234445566666 45666666655332222222 2222222111 0 00 0012333322222
Q ss_pred hhhhhhhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHH-----HHHHHHHhcC
Q 020541 240 WKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYIT-----TSFFGLLLFG 299 (325)
Q Consensus 240 ~~~~~~~~i~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~-----~g~~gy~~fG 299 (325)
.-+..+.+.+.|+++ +...+....+.++++++..|........-+.+-++ ++..||.++|
T Consensus 242 ~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g 307 (519)
T 2a65_A 242 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFG 307 (519)
T ss_dssp HHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345778888899988 45555566666776667777555555554444333 3334555444
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=79.13 E-value=20 Score=32.20 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
.....++.+..+|+++..++.+...+..+++..++....+..+....+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999998888888877765544
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=65.61 E-value=81 Score=28.74 Aligned_cols=35 Identities=3% Similarity=-0.029 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
++...++.+...+..+++..+++...+..+....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 321 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQ 321 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56677888888888887777776666666654443
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=48.07 E-value=96 Score=28.98 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHHhHhhhhch----HH-HHHHh--hC-----hHHHHHHHHHHHHHHHHHHHHHHHHHh------hc
Q 020541 38 IDGASFSGAVFNLSTTIVGAGIMA----LP-ATVKE--LG-----LIPGLIMIVLVGWLTESSIDMIMRFSR------AS 99 (325)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~giL~----lP-~~f~~--~G-----~~~g~i~l~~~~~~~~~t~~~l~~~~~------~~ 99 (325)
+.+-|.++=+.-+.++-+|.|++. =| +.+.. .| .-.+...-++=+.+..|+.+.++.... +.
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~ 172 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVG 172 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTC
T ss_pred CCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCC
Confidence 444567777788889999999883 23 22221 11 222333333334455555555544332 22
Q ss_pred CCCC-----HHHHHHH-HcChhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541 100 KSAT-----YSGVVAD-AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (325)
Q Consensus 100 ~~~~-----y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 143 (325)
...+ |+-++++ +.|+. +.++|++-++...+....-+-+...++
T Consensus 173 ~pl~iss~l~PllG~r~~~G~~-G~~IDilav~atv~GvatSLGlg~~Qi 221 (539)
T 4ain_A 173 RKQLLSSAFVPLIGEKGAEGWL-GKLIDILAIIATVFGTACSLGLGALQI 221 (539)
T ss_dssp CCSCTTGGGHHHHHHHHTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHhHhhcCCCccCCcc-hhhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2233 4444444 44544 457777777666555555554444444
No 11
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=46.02 E-value=1.2e+02 Score=28.02 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHHHhHhhhhchH
Q 020541 41 ASFSGAVFNLSTTIVGAGIMAL 62 (325)
Q Consensus 41 ~s~~~~~~~l~~~~iG~giL~l 62 (325)
-|.++=+.-+.++-+|.|++.-
T Consensus 91 fs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 91 FSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp SCHHHHHHHHHHHTCCHHHHHH
T ss_pred CccchHHHHHHHHhhhhHHhhh
Confidence 4666677788889999998764
No 12
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=44.05 E-value=1.7e+02 Score=25.88 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=36.1
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (325)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 148 (325)
....++.+..+|+++..++.+...+..+++..+.+...+..+..+.+
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999998888888888777666666554443
Done!