Query 020542
Match_columns 325
No_of_seqs 125 out of 146
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 04:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020542.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020542hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 77.1 1.2 8.4E-05 37.6 4.6 139 182-323 105-251 (328)
2 d1qg8a_ c.68.1.1 (A:) Spore co 56.8 40 0.0029 26.2 10.3 30 183-212 87-116 (255)
3 d2bo4a1 c.68.1.18 (A:2-382) Ma 39.7 6.1 0.00044 36.1 2.3 182 110-312 1-205 (381)
4 d1omza_ c.68.1.15 (A:) Alpha-1 32.8 6.9 0.0005 29.1 1.2 38 182-219 79-116 (265)
5 d1xdpa4 d.136.1.4 (A:502-688) 21.4 24 0.0018 29.3 2.7 37 266-302 120-159 (187)
6 d2o8ra4 d.136.1.4 (A:506-691) 18.7 19 0.0014 30.0 1.4 37 266-303 119-159 (186)
7 d1s4na_ c.68.1.16 (A:) Glycoli 18.7 21 0.0015 32.2 1.7 39 178-220 131-176 (339)
8 d2qeda1 d.157.1.2 (A:1-251) Gl 16.3 40 0.0029 28.0 3.0 39 179-218 7-48 (251)
9 d1vl2a1 c.26.2.1 (A:2-169) Arg 15.4 31 0.0023 24.3 1.8 35 108-146 2-36 (168)
10 d1vyua1 b.34.2.1 (A:39-174) SH 15.3 27 0.002 27.2 1.5 40 135-175 23-70 (136)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.14 E-value=1.2 Score=37.62 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=71.6
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHhhCCccccCccCCCCCc-cc----cceeeeecCccccee--eeeccCCCCC
Q 020542 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSE-VH----HPITARRRNSKAHRR--MYKYKGSGRC 254 (325)
Q Consensus 182 va~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQPALd~~~s~-~~----h~iT~R~~~~~vHr~--~~~~~~~~~C 254 (325)
.+.-|||++.|+|..++.--++++++.+++..-.+..|.++.-.+. .. ...+.-.-...++.+ ..........
T Consensus 105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (328)
T d1xhba2 105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRR 184 (328)
T ss_dssp HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHT
T ss_pred hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCccccccccccccccccccchhhhhcc
Confidence 4678999999999999999999999999888877777664321000 00 000000000001100 0000000001
Q ss_pred CCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceeh-hhhhhhhhhccCCCCCeEEEeeeeEEec
Q 020542 255 DDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLGYCAQVIFYKPITSISHSLCCIN 323 (325)
Q Consensus 255 ~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWG-LD~~~~~c~q~~~~~kiGVVDa~~V~H~ 323 (325)
....+.|..+.++..-+=.++|++|.-+ ..+ +.....|| =|.-+..-+.. .+.+|..+-...|.|.
T Consensus 185 ~~~~~~~~~~~~~~g~~~~irr~~f~~v-Ggf-De~~~~~g~ED~Dl~~R~~~-~G~~i~~~p~~~v~H~ 251 (328)
T d1xhba2 185 KGDRTLPVRTPTMAGGLFSIDRDYFQEI-GTY-DAGMDIWGGENLEISFRIWQ-CGGTLEIVTCSHVGHV 251 (328)
T ss_dssp TTCTTSCEECSBCCSSSEEEEHHHHHHT-TSC-CTTSCTTCCCCSHHHHHHHH-TTCEEEEEEEEEEEEE
T ss_pred ccccccccccceecceeeeeeHHHHHHh-CCC-CCCCcCcCchHHHHHHHHHH-hCCeEEEeCCeEEEEe
Confidence 1111222222233332335799999986 455 33344554 34444422221 2468999988888884
No 2
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=56.82 E-value=40 Score=26.19 Aligned_cols=30 Identities=17% Similarity=0.007 Sum_probs=21.7
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHhh
Q 020542 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE 212 (325)
Q Consensus 183 a~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~ 212 (325)
+..|||+++|+|-..+.--+++.++.++++
T Consensus 87 a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~ 116 (255)
T d1qg8a_ 87 AEGEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred cccccccccccccccccchHHHHHHHHHhC
Confidence 579999999988666554466666666554
No 3
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=39.74 E-value=6.1 Score=36.12 Aligned_cols=182 Identities=14% Similarity=0.060 Sum_probs=95.1
Q ss_pred cEEEEEeccccccchhHHh---hcCCCCCcEEEEEEecCccCcccccccc------CceeEEEeeccc--------c---
Q 020542 110 NLLAIAAGIKQKKIVDQIV---RKFPSKDFVVMLFHYDGVVDEWKDLVWA------DRAIHVSAANQT--------K--- 169 (325)
Q Consensus 110 ~Lla~~VG~kqk~~Vd~~v---~kf~~~nF~vmLfhYDg~vd~w~d~ews------~~aiHv~a~kqt--------K--- 169 (325)
+||.+|+=+.+...+-..+ .+. ...+.+++-=|+..|.|...+-. ...+++.+..+- |
T Consensus 1 slVVIP~~NEe~~il~~~v~~~a~~--P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g 78 (381)
T d2bo4a1 1 SLVVFPFKHEHPEVLLHNVRVAAAH--PRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDG 78 (381)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHS--TTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHH
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhC--CCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHH
Confidence 3777887776554444443 333 46788888766676666543211 011222222111 1
Q ss_pred eeeeccccCcchhccccEEEEeccccc-CCCCChHHHHHHHHhhCCccccCccCCC--CCccccceeeeecCcccceeee
Q 020542 170 WWFAKRFLHPDIVAEYNYIFLWDEDIG-VENFNPRRYLSIVKDEGLEISQPALDPV--KSEVHHPITARRRNSKAHRRMY 246 (325)
Q Consensus 170 WwfakrfLhPdiva~YdYIFlwDeDL~-vd~f~~~ry~~Ivr~~gLeISQPALd~~--~s~~~h~iT~R~~~~~vHr~~~ 246 (325)
-+.|-+ .-=-.+..|+|.+.|-|+. .+.-.+.+++..++ +|-++.-|..... .|-+++.+. ++-. +..+
T Consensus 79 ~~~A~~--~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~-~g~d~V~g~y~R~~~~grvt~~l~--~pll---~~l~ 150 (381)
T d2bo4a1 79 MNTALR--YFLEETQWERIHFYDADITSFGPDWITKAEEAAD-FGYGLVRHYFPRASTDAMITWMIT--RTGF---ALLW 150 (381)
T ss_dssp HHHHHH--HHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH-TTCSEEEEECCCCTTSCHHHHHTH--HHHH---HHHC
T ss_pred HHHHHH--HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHh-hhcCeEEEeeccccCCCceehHhh--HHHH---HHHh
Confidence 010100 0001368999999999995 46666889998875 6788877744332 233433211 1100 0111
Q ss_pred eccCCCCCCCCCCCCCccceEeeeeccccHHHHHHHhhhhcCCCcceehhhhhhhhhhccCCCCCe
Q 020542 247 KYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQVIFYKPI 312 (325)
Q Consensus 247 ~~~~~~~C~~~~~~ppctgfVEiMAPVFSr~Awrcvw~miQNDLvhGWGLD~~~~~c~q~~~~~ki 312 (325)
+..|...-.. |-+||. .|+|++.+++...-.=+.-.|||+|..+..-+.. ..-+|
T Consensus 151 ----~~~~~~~i~d-Pl~G~~-----a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~-~G~rI 205 (381)
T d2bo4a1 151 ----PHTELSWIEQ-PLGGEL-----LMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQ-QGVSI 205 (381)
T ss_dssp ----TTSSGGGCSC-TTCCCE-----EEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHH-TTCCE
T ss_pred ----hhhccccccc-CCcccc-----eeeHHHHHHhhhhccccccCCcccchHHHHHHHH-cCCeE
Confidence 0111111112 223454 7999999987643210112699999999887753 34444
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.83 E-value=6.9 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.041 Sum_probs=28.4
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHhhCCccccC
Q 020542 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 219 (325)
Q Consensus 182 va~YdYIFlwDeDL~vd~f~~~ry~~Ivr~~gLeISQP 219 (325)
.+.-|||++.|+|.-++.-.+++.++.+.++.-.+.+.
T Consensus 79 ~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 116 (265)
T d1omza_ 79 EVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGF 116 (265)
T ss_dssp TCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEES
T ss_pred hCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceec
Confidence 35789999999998887777777777777665544433
No 5
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=21.42 E-value=24 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=27.0
Q ss_pred eEeeeeccccHHHHHHHhhhh---cCCCcceehhhhhhhh
Q 020542 266 WVEMMAPVFSRAAWRCAWYMI---QNDLIHAWGLDIQLGY 302 (325)
Q Consensus 266 fVEiMAPVFSr~Awrcvw~mi---QNDLvhGWGLD~~~~~ 302 (325)
=||+|+||...+.=+-+...+ =+|++.+|=||-.-.|
T Consensus 120 RVEv~~PI~d~~~k~~i~~il~~~L~Dn~ka~~L~~dG~y 159 (187)
T d1xdpa4 120 RIEVATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSN 159 (187)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHTCCSSEEECCTTCCC
T ss_pred hhheeeEeCCHHHHHHHHHHHHHHhhhhHHHheeCCCCCE
Confidence 499999999987755444333 3899999999865443
No 6
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=18.66 E-value=19 Score=29.96 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=27.5
Q ss_pred eEeeeeccccHHHHHHHh----hhhcCCCcceehhhhhhhhh
Q 020542 266 WVEMMAPVFSRAAWRCAW----YMIQNDLIHAWGLDIQLGYC 303 (325)
Q Consensus 266 fVEiMAPVFSr~Awrcvw----~miQNDLvhGWGLD~~~~~c 303 (325)
=||+++||...+-=+-+. .++ +|++.+|=||-.-.|.
T Consensus 119 RVEv~~PI~d~~~k~~l~~iL~~~l-~Dn~kaw~L~~dG~y~ 159 (186)
T d2o8ra4 119 RIETACPVLDPTLRREIIDILEIQL-RDNIKACRIDSSLNNI 159 (186)
T ss_dssp SBCEEEECCSHHHHHHHHHHHHHHH-HCCSSCEEECTTCCEE
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHHc-cccHhhEEECCCCCEe
Confidence 399999999987644333 344 8999999998766554
No 7
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.65 E-value=21 Score=32.23 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=27.1
Q ss_pred CcchhccccEEEEecccccCC---CCChHHHHHHHHhh----CCccccCc
Q 020542 178 HPDIVAEYNYIFLWDEDIGVE---NFNPRRYLSIVKDE----GLEISQPA 220 (325)
Q Consensus 178 hPdiva~YdYIFlwDeDL~vd---~f~~~ry~~Ivr~~----gLeISQPA 220 (325)
|| ++++|||+|=.|+|+.+. ++|+-+ .|++. |.-|+..-
T Consensus 131 ~p-~L~~YdYywRvdpD~~f~cdI~yD~F~---~M~~n~k~YGf~~~~~e 176 (339)
T d1s4na_ 131 HE-LLEEYDWYWRVEPDIKLYCDINYDVFK---WMQENEKVYGFTVSIHE 176 (339)
T ss_dssp SG-GGTTCSEEEECCTTCEECSCCCSCHHH---HHHHTTCCEEESCEEEC
T ss_pred ch-hhhccceEEEeCCCcEEecCCCCCHHH---HHhhcCCeEEEEEeecc
Confidence 66 789999999999999875 355544 45544 44455543
No 8
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Probab=16.26 E-value=40 Score=27.96 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=29.2
Q ss_pred cchhccccEEEEeccc---ccCCCCChHHHHHHHHhhCCcccc
Q 020542 179 PDIVAEYNYIFLWDED---IGVENFNPRRYLSIVKDEGLEISQ 218 (325)
Q Consensus 179 Pdiva~YdYIFlwDeD---L~vd~f~~~ry~~Ivr~~gLeISQ 218 (325)
|-+-+.|-|++ .||. +.||..+++++++.++++|+.+..
T Consensus 7 p~~~DNy~YLi-~~~~~~avvIDPg~~~~il~~i~~~~~~l~~ 48 (251)
T d2qeda1 7 PAFQDNYIWVL-TNDEGRCVIVDPGEAAPVLKAIAEHKWMPEA 48 (251)
T ss_dssp EETTTEEEEEE-ECTTSEEEEECCSCHHHHHHHHHHHTCEEEE
T ss_pred eeecCeEEEEE-EeCCCeEEEEcCCccHHHHHHHHHcCCceeE
Confidence 33445666654 5554 678999999999999999998854
No 9
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=15.37 E-value=31 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCcEEEEEeccccccchhHHhhcCCCCCcEEEEEEecCc
Q 020542 108 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV 146 (325)
Q Consensus 108 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~ 146 (325)
.|.+||++-|..+.....-+ ++ .+|+|..+|.|..
T Consensus 2 ~KIvvalSGGvDS~vl~~lL-~~---~~~~v~a~~~~~~ 36 (168)
T d1vl2a1 2 EKVVLAYSGGLDTSVILKWL-CE---KGFDVIAYVANVG 36 (168)
T ss_dssp CEEEEECCSSHHHHHHHHHH-HH---TTCEEEEEEEESS
T ss_pred CEEEEEeccHHHHHHHHHHH-HH---cCCeEEEEEcccC
Confidence 57899999999887665544 33 3688988887654
No 10
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.32 E-value=27 Score=27.20 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=28.4
Q ss_pred CcEE-EEEEecCccCccc-------cccccCceeEEEeecccceeeecc
Q 020542 135 DFVV-MLFHYDGVVDEWK-------DLVWADRAIHVSAANQTKWWFAKR 175 (325)
Q Consensus 135 nF~v-mLfhYDg~vd~w~-------d~ews~~aiHv~a~kqtKWwfakr 175 (325)
-|-| .||.|||..|+-- -|.= ...|||.-....-||.++.
T Consensus 23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~-gdil~v~~~~d~~WW~~r~ 70 (136)
T d1vyua1 23 AFAVRTNVSYCGVLDEECPVQGSGVNFEA-KDFLHIKEKYSNDWWIGRL 70 (136)
T ss_dssp CEEEEESSCEEGGGCTTCSSTTCBCEECT-TCEEEEEEECSSSEEEEEE
T ss_pred eEEEEEeeccCCCCCCCCcccCcccCCCC-CCEEEEEeccCCCcEEEEe
Confidence 4544 7899999988641 1443 3479998777778999974
Done!