BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020543
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
Length = 300
Score = 287 bits (734), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 158/298 (53%), Positives = 201/298 (67%), Gaps = 9/298 (3%)
Query: 31 SKSWNWQGEEFCLQKGSNF-DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATH 89
S SWNWQ + + Q S+F D+ EV LN+ED SYM DDE TPVK+C +L Y T
Sbjct: 9 SSSWNWQVDNYNHQPQSHFSDVPDCTMTEVTLNQEDHSYMFDDENTPVKACSELGYHVT- 67
Query: 90 SGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPG 149
+ ++ + H ET S KRRRMLQF+ Q ++SL E SA KS+ R+D+ +E+LP
Sbjct: 68 TEDTNRKMEVHSETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPE 126
Query: 150 VSQWTTGLS-GLSASNCDGLDSF-EGWIAECLNDPEMTFTPDDMNFSEASDIQIDISEFC 207
SQ G S SAS+ +GLD + E W A+CLND E PDD+NF + D+Q+DISE+
Sbjct: 127 GSQLIEGFSEDASASSFEGLDLYAEEWYADCLNDAETPMLPDDLNFG-SPDVQVDISEYL 185
Query: 208 NSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDV 267
N P T VQ+ VTR+ NV+FKGRKS R +KL SS+ YPFAFIKPCG+HG +
Sbjct: 186 NVP---PETETREVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGM 242
Query: 268 TLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 325
TL DINQ+I +P +K K +I++P+ TSAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 243 TLKDINQKIRNPPAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300
>sp|O34454|YKAA_BACSU UPF0111 protein YkaA OS=Bacillus subtilis (strain 168) GN=ykaA PE=3
SV=1
Length = 205
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 128 EMPSAFQKSNERED------SVEEVLPGVSQWTTGLSGLSASNCD-GLDSFEGWIAECLN 180
E+ AF ERED S+++VL G+ ++ + S ++ D +D F G+I EC
Sbjct: 62 ELNKAFITPIEREDILQLTNSLDDVLDGIEHFSAMMEIFSITSSDEHIDKFSGYIRECA- 120
Query: 181 DPEMTFTPDDMNFSEASDIQ---IDISEFCNSTNSL 213
E+ T + + + DIQ I I E+ +S ++L
Sbjct: 121 -KEILITIELLAENRLKDIQPHAIKIKEYEHSCDNL 155
>sp|B8I0Q8|HEM3_CLOCE Porphobilinogen deaminase OS=Clostridium cellulolyticum (strain
ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=hemC PE=3
SV=1
Length = 293
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 139 REDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMN 192
R SV+E+LP SQ + G + N D L F + C++ E TF +MN
Sbjct: 180 RYFSVDEILPAASQGIIAVQGRAGENFDFLKLFHSEESLCISQAERTFV-REMN 232
>sp|P0C063|GRSB_ANEMI Gramicidin S synthase 2 OS=Aneurinibacillus migulanus GN=grsB PE=3
SV=2
Length = 4451
Score = 33.5 bits (75), Expect = 2.3, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 28 PGDSKSWNWQ--GEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAY 85
P D S+ Q G L + + +F+ VIL+E+ L PV GDLAY
Sbjct: 1591 PADRISYMIQDCGVRIMLTQQHLLSLVHDEFDCVILDEDSLYKGDSSNLAPVNQAGDLAY 1650
Query: 86 QATHSGKMSKDPK----EHRETYSQAKRRRMLQ 114
SG K PK EHR K +Q
Sbjct: 1651 IMYTSGSTGK-PKGVMVEHRNVIRLVKNTNYVQ 1682
>sp|P0C064|GRSB_BREBE Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2
Length = 4450
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 28 PGDSKSWNWQ--GEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAY 85
P D S+ Q G L + + +F+ VIL+E+ L PV GDLAY
Sbjct: 1591 PADRISYMIQDCGVRIMLTQQHLLSLVHDEFDCVILDEDSLYKGDSSNLAPVNQAGDLAY 1650
Query: 86 QATHSGKMSKDPK----EHRETYSQAKRRRMLQ 114
SG K PK EHR K +Q
Sbjct: 1651 IMYTSGSTGK-PKGVMVEHRNVIRLVKNTNYVQ 1682
>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1
Length = 1140
Score = 32.0 bits (71), Expect = 6.3, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 63 EEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDS 122
E L+ + + TT + L Q S K D + RE + RR ++
Sbjct: 775 ETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMAREN 834
Query: 123 SLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFE 172
E+ +A Q+ E + V + + VS+W + ++ N D LD F+
Sbjct: 835 QEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQ 884
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,440,186
Number of Sequences: 539616
Number of extensions: 5403865
Number of successful extensions: 9066
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9058
Number of HSP's gapped (non-prelim): 11
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)