BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020545
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 134/325 (41%), Gaps = 47/325 (14%)
Query: 28 ELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET---- 83
E G + D+ Q + + LR+GD+ +P G + W YNNG +V V + +T
Sbjct: 111 EQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHA 170
Query: 84 --------SRAYVPG----------EFSYFLLTGAQG---ILGGFSSEFTGRAYNMNENE 122
+R Y+ G +FS G + I GF + ++ ++E
Sbjct: 171 NQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEI 230
Query: 123 AKILA----------KSQTGVLIIK----------LGQDESEKIP--LPHQHGNANLMVN 160
A+ L + Q G+ +IK G S +P + +A L VN
Sbjct: 231 AQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARLAVN 290
Query: 161 NFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYV 220
AD +AG +T+ N P L + LS L NAM++P Y ++ + Y
Sbjct: 291 VDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYC 350
Query: 221 VKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGK 280
V+G G+ QIV + V D E+ GQL+VVP+ F + A +G E S TS
Sbjct: 351 VRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQS 410
Query: 281 LGGKQSVMNGFSASVVQLALNVNEE 305
L G+ S + VV ++ E
Sbjct: 411 LAGRTSAIRSLPIDVVSNIYQISRE 435
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 144/362 (39%), Gaps = 80/362 (22%)
Query: 42 HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG 90
+ + + R+GD+I VP G A W YNN + VV V + +T+ R Y+ G
Sbjct: 108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAG 167
Query: 91 --EFSYFLLTGAQG-------------------ILGGFSSEFTGRAYNMNENEAKILAKS 129
E + QG IL GF+ EF A+++++ AK L
Sbjct: 168 NQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGE 227
Query: 130 ------------QTGVLIIK------------------------LGQDESEKIPLPHQHG 153
+ G+ +IK G+D+ + P Q
Sbjct: 228 NEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSK 287
Query: 154 NAN-----------LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
+ L N D +AG VT+ T +FP L + LS L
Sbjct: 288 SRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRK 347
Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
NAM P Y ++ + Y + G Q+V N + V D E++ G++L+VP+ FVVA +
Sbjct: 348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQS 407
Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
+ E S T+ P +G L G S++N V+Q N+ + + K N + L+P
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLVP 466
Query: 323 PK 324
P+
Sbjct: 467 PQ 468
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 144/362 (39%), Gaps = 80/362 (22%)
Query: 42 HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG 90
+ + + R+GD+I VP G A W YNN + VV V + +T+ R Y+ G
Sbjct: 108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAG 167
Query: 91 --EFSYFLLTGAQG-------------------ILGGFSSEFTGRAYNMNENEAKILAKS 129
E + QG IL GF+ EF A+++++ AK L
Sbjct: 168 NQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGE 227
Query: 130 ------------QTGVLIIK------------------------LGQDESEKIPLPHQHG 153
+ G+ +IK G+D+ + P Q
Sbjct: 228 NEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSK 287
Query: 154 NAN-----------LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
+ L N D +AG VT+ T +FP L + LS L
Sbjct: 288 SRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRK 347
Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
NAM P Y ++ + Y + G Q+V N + V D E++ G++L+VP+ FVVA +
Sbjct: 348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQS 407
Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
+ E S T+ P +G L G S++N V+Q N+ + + K N + L+P
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLVP 466
Query: 323 PK 324
P+
Sbjct: 467 PQ 468
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 144/362 (39%), Gaps = 80/362 (22%)
Query: 42 HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG 90
+ + + R+GD+I VP G A W YNN + VV V + +T+ R Y+ G
Sbjct: 108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAG 167
Query: 91 --EFSYFLLTGAQG-------------------ILGGFSSEFTGRAYNMNENEAKILAKS 129
E + QG IL GF+ EF A+++++ AK L
Sbjct: 168 NQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGE 227
Query: 130 ------------QTGVLIIK------------------------LGQDESEKIPLPHQHG 153
+ G+ +IK G+D+ + P Q
Sbjct: 228 NEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSK 287
Query: 154 NAN-----------LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
+ L N D +AG VT+ T +FP L + LS L
Sbjct: 288 SRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRK 347
Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
NAM P Y ++ + Y + G Q+V N + V D E++ G++L+VP+ FVVA +
Sbjct: 348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQS 407
Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
+ E S T+ P +G L G S++N V+Q N+ + + K N + L+P
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLVP 466
Query: 323 PK 324
P+
Sbjct: 467 PQ 468
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 49/331 (14%)
Query: 43 SQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG- 90
Q + + R+GD++ VP G + W YN G SD+V++ +T + Y+ G
Sbjct: 123 DQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGR 182
Query: 91 ---------EFSYFLLTGAQG-----ILGGFSSEFTGRAYNMN----------ENEAKIL 126
E+ G+ G I GF+ EF A+ ++ ++E +
Sbjct: 183 PEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRI 242
Query: 127 AKSQTGVLIIKLGQDESEK-----IPLPHQHGNA--------NLMVNNFANFPADFCVKK 173
+ ++ +DE E+ I + N L N + AD +
Sbjct: 243 VQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPR 302
Query: 174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN 233
G +++ P L QV LS L +NAM++P YT +S V Y +G+ + Q+V
Sbjct: 303 GGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNF 362
Query: 234 AKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSA 293
+ V D EV GQ+L++P+ FVV A G E + T+ L G+ S M
Sbjct: 363 GQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPL 422
Query: 294 SVVQLALNVNEEFLKFFKENVATSEILIPPK 324
V+ ++ E + K +L P +
Sbjct: 423 GVLSNMYRISREEAQRLKYGQQEMRVLSPGR 453
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 45 EEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE--TSRAYVPGEFSYFLLTG--- 99
+ V +R GD I G A W+YN+G+ +VIV V + + + + F L G
Sbjct: 143 HQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNP 202
Query: 100 -------------AQGILGGFSSEFTGRAYNMNENEAKILAKSQ--TGVLIIKLGQDESE 144
+ IL GF+ E +A+ ++ A+ L Q G +I G
Sbjct: 203 QGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVI 262
Query: 145 KIPLPHQHGNANL-----------MVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVG 192
+ PL Q + +N + AD + G +++ + P L +
Sbjct: 263 RPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLR 322
Query: 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252
LS + NAM+ P + A++ V YV G Q+V N V D +V GQLL +P+
Sbjct: 323 LSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQ 382
Query: 253 CFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKE 312
F V A E T+ + L G+ SV+ G V+ ++ E + K
Sbjct: 383 GFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKF 442
Query: 313 NV 314
N
Sbjct: 443 NT 444
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%)
Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
AD +AG +++ N P L + LS N + SP + ++ V YV++G+ +
Sbjct: 368 ADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNAR 427
Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
Q+V N +LD EV+ GQL +VP+ V AG +G E F+ T + L G+ S
Sbjct: 428 VQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTS 487
Query: 287 VMNGFSASVVQLALNVNEEFLKFFKEN 313
+ V+ A ++ E + K N
Sbjct: 488 FLRALPDEVLANAYQISREQARQLKYN 514
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 51 LRKGDVIPVPLGSASWWYNNGSSDVVIV 78
+R+GDV+ +P G A W YN+G ++V V
Sbjct: 176 IREGDVVAIPAGVAYWSYNDGDQELVAV 203
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
ADF KAG +++ P L Q GLS + L N + SP + ++ V YV +G G+
Sbjct: 341 ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGR 400
Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIE 266
++V V D E+ GQLLVVP+ FVVA G +G+E
Sbjct: 401 VRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLE 440
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 35/122 (28%)
Query: 40 QKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS--RAYVPGEFSYFLL 97
Q + + +GDV+ +P G W YN G VV + + +TS + F L
Sbjct: 106 QLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYL 165
Query: 98 TG---------------------------------AQGILGGFSSEFTGRAYNMNENEAK 124
G +L GFS F +++N NE+ A+
Sbjct: 166 AGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAE 225
Query: 125 IL 126
L
Sbjct: 226 KL 227
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
ADF KAG +++ P L Q GLS + L N + SP + ++ V YV +G G+
Sbjct: 340 ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGR 399
Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIE 266
++V V D E+ GQLLVVP+ FVVA G +G+E
Sbjct: 400 VRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLE 439
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 35/122 (28%)
Query: 40 QKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS--RAYVPGEFSYFLL 97
Q + + +GDV+ +P G W YN G VV + + +TS + F L
Sbjct: 105 QLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYL 164
Query: 98 TG---------------------------------AQGILGGFSSEFTGRAYNMNENEAK 124
G +L GFS F +++N NE+ A+
Sbjct: 165 AGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAE 224
Query: 125 IL 126
L
Sbjct: 225 KL 226
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%)
Query: 168 DFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKA 227
D +AG + + T + P L + LS L NAM P Y ++ + Y +KG +
Sbjct: 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARL 392
Query: 228 QIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSV 287
Q+V N V D E+EAG+ L VP+ + VA + + + T+ R + +L G SV
Sbjct: 393 QVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSV 452
Query: 288 MNGFSASVVQLALNVNEEFLKFFKEN 313
+N VV N+ + K N
Sbjct: 453 INNLPLDVVAATFNLQRNEARQLKSN 478
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 24/104 (23%)
Query: 42 HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE-----------TSRAYVPG 90
+ + V R+GD+I VP G W YN+ + V+ V + + R Y+ G
Sbjct: 105 RDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAG 164
Query: 91 --EFSYFLLTGAQG-----------ILGGFSSEFTGRAYNMNEN 121
E + QG I GF +F A+N+N +
Sbjct: 165 NHEQEFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRH 208
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Query: 164 NFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKG 223
N D +AG + + N L +GLS L NA+ P Y ++ + Y ++G
Sbjct: 343 NRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRG 402
Query: 224 SGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGG 283
Q+V N V D E++ G +LVVP+ F VA + + E + T +RP++ L G
Sbjct: 403 RAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAG 462
Query: 284 KQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
+ SV++ VV + + E + K N + +PP
Sbjct: 463 ENSVIDNLPEEVVANSYGLPREQARQLKNNNPF-KFFVPP 501
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 48 VLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS 84
V +GD+I VP G A W YN+ +DVV V + +T+
Sbjct: 127 VHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTN 163
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 23/233 (9%)
Query: 51 LRKGDVIPVPLGSASWWYN-NGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGI---LGG 106
L +GD I + G+ + N + + ++ I+ T R PG F L+ + + L
Sbjct: 132 LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRR--PGTVEDFFLSSTKRLPSYLSA 189
Query: 107 FSSEFTGRAYN--MNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFAN 164
FS F +Y+ +E E +L + Q GV I+K+ +D+ ++I Q + + +
Sbjct: 190 FSKNFLEASYDSPYDEIEQTLLQEEQEGV-IVKMPKDQIQEISKHAQSSSRKTLSSQDKP 248
Query: 165 F----PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYV 220
F G + T L + + L+++ A+ P Y + + +
Sbjct: 249 FNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVA 308
Query: 221 VKGSGKAQIVGLNAKLVLD----------SEVEAGQLLVVPRCFVVAIIAGPE 263
+G + ++VGL + + + G ++V+P F VA+ A +
Sbjct: 309 NEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASD 361
>pdb|4IB2|A Chain A, Crystal Structure Of A Putative Lipoprotein (rumgna_00858)
From Ruminococcus Gnavus Atcc 29149 At 1.76 A Resolution
pdb|4IB2|B Chain B, Crystal Structure Of A Putative Lipoprotein (rumgna_00858)
From Ruminococcus Gnavus Atcc 29149 At 1.76 A Resolution
Length = 252
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 74 DVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGV 133
+V IV + A V GE +Y +L G + G+S AY +++EA AK+ +
Sbjct: 155 NVEIVELEAAQVARVTGETAYVVLNGNYALEAGYSVAKDALAYEKSDSEA---AKTYVNI 211
Query: 134 LIIKLGQDESEKI 146
+ +K G ++ EKI
Sbjct: 212 IAVKEGNEKEEKI 224
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL 232
K G T P L+ + + + + + A+L P Y++ ++ + + +G K ++VGL
Sbjct: 246 KFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGL 305
Query: 233 NAKLV------------LDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTSTRPALG 279
+ + +E+ + V+P + VAI A F I
Sbjct: 306 SDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSNLNFFAFGINAENNRRNF 365
Query: 280 KLGGKQSVMNGFSASVVQLAL 300
GGK +VM+ V++++
Sbjct: 366 LAGGKDNVMSEIPTEVLEVSF 386
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL 232
K G T P L+ + + + + + A+L P Y + ++ + + +G K ++VGL
Sbjct: 245 KFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVINEGEAKIELVGL 304
Query: 233 NAKLV------------LDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTSTRPALG 279
+ + +E+ + V+P + VAI A F I
Sbjct: 305 SDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSNLNFFAFGINAENNQRNF 364
Query: 280 KLGGKQSVMNGFSASVVQLAL 300
GGK +VM+ V++++
Sbjct: 365 LAGGKDNVMSEIPTEVLEVSF 385
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD 74
+ + ++P++ +LG G+ PN + + + + D GS + N G++D
Sbjct: 109 QKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAAD 168
Query: 75 VVIVF 79
+ IVF
Sbjct: 169 IYIVF 173
>pdb|3NQI|A Chain A, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|B Chain B, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|C Chain C, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|D Chain D, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
Length = 246
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 230 VGLNAKLV-LDSEVEAGQLLVV-PRCFVVAIIAGPEGIECFSITTSTRPALGKLG----- 282
V LNA+ + +V+ GQ L P+ + ++A P GI+ +ITT P +G+ G
Sbjct: 43 VTLNARXAYIYCQVDEGQDLSTNPKSIKITLLADPTGIDATAITT---PKVGESGDVTTN 99
Query: 283 ---GKQSVMNGFS 292
G S ++G+S
Sbjct: 100 APVGSLSFVSGYS 112
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 145 KIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLD 201
K+ HQ GN N+ ++ A PA + +AG++ ++ G + + T+L++D
Sbjct: 450 KLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVD 506
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGL-RKGDVIPVPLGSASWWYNNGSSD 74
H I II E G G+ PN +K+ + G KG ++ +W Y G SD
Sbjct: 241 HTIDFIIMSEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSD 297
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGL-RKGDVIPVPLGSASWWYNNGSSD 74
H I II E G G+ PN +K+ + G KG ++ +W Y G SD
Sbjct: 241 HTIDFIIMSEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSD 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,401,599
Number of Sequences: 62578
Number of extensions: 395567
Number of successful extensions: 950
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 39
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)