Query 020545
Match_columns 325
No_of_seqs 187 out of 1590
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 4.8E-70 1E-74 537.8 34.2 315 5-324 87-479 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 1E-45 2.2E-50 357.1 31.8 287 5-314 74-363 (367)
3 PF00190 Cupin_1: Cupin; Inte 99.9 1.1E-26 2.3E-31 197.2 14.3 135 160-307 1-143 (144)
4 PLN00212 glutelin; Provisional 99.9 7.7E-26 1.7E-30 224.0 17.1 159 161-321 48-258 (493)
5 smart00835 Cupin_1 Cupin. This 99.9 1.9E-22 4.2E-27 171.5 17.4 138 170-307 7-145 (146)
6 TIGR03404 bicupin_oxalic bicup 99.9 5.7E-22 1.2E-26 191.9 16.0 147 157-314 37-186 (367)
7 COG2140 Thermophilic glucose-6 99.8 1.1E-19 2.4E-24 160.3 13.7 194 108-315 2-201 (209)
8 PF00190 Cupin_1: Cupin; Inte 99.8 2.9E-18 6.4E-23 145.4 11.0 101 5-123 41-143 (144)
9 smart00835 Cupin_1 Cupin. This 99.7 1.6E-15 3.5E-20 128.9 12.6 107 6-123 38-145 (146)
10 TIGR03214 ura-cupin putative a 99.4 8E-11 1.7E-15 109.4 22.4 176 15-274 77-255 (260)
11 PRK11171 hypothetical protein; 99.4 2E-10 4.3E-15 107.2 22.6 179 15-275 80-261 (266)
12 COG2140 Thermophilic glucose-6 99.1 4.1E-10 8.9E-15 99.8 9.3 99 13-126 96-196 (209)
13 TIGR02272 gentisate_1_2 gentis 99.0 3.7E-09 8.1E-14 101.1 13.4 214 12-271 95-320 (335)
14 PRK04190 glucose-6-phosphate i 98.9 2.6E-08 5.6E-13 88.4 13.4 86 188-274 63-157 (191)
15 COG0662 {ManC} Mannose-6-phosp 98.9 4.7E-09 1E-13 87.3 8.1 60 12-82 51-110 (127)
16 PF07883 Cupin_2: Cupin domain 98.9 6E-09 1.3E-13 76.7 7.6 69 197-271 2-71 (71)
17 PF07883 Cupin_2: Cupin domain 98.7 4.6E-08 9.9E-13 72.0 7.6 64 7-81 7-71 (71)
18 PRK04190 glucose-6-phosphate i 98.7 1.5E-07 3.2E-12 83.5 9.6 61 17-83 96-156 (191)
19 COG3435 Gentisate 1,2-dioxygen 98.6 6.7E-07 1.5E-11 83.0 13.4 219 12-271 105-332 (351)
20 PRK13290 ectC L-ectoine syntha 98.6 5.3E-07 1.2E-11 74.8 11.1 77 191-273 33-109 (125)
21 COG0662 {ManC} Mannose-6-phosp 98.5 9.9E-07 2.2E-11 73.3 10.9 78 192-275 35-113 (127)
22 COG1917 Uncharacterized conser 98.5 8.3E-07 1.8E-11 73.8 10.4 79 189-273 39-118 (131)
23 COG3837 Uncharacterized conser 98.5 6.2E-07 1.4E-11 75.9 8.2 62 12-84 57-121 (161)
24 TIGR03214 ura-cupin putative a 98.4 8.6E-07 1.9E-11 82.5 9.1 59 14-83 196-254 (260)
25 COG1917 Uncharacterized conser 98.4 8.8E-07 1.9E-11 73.6 7.5 62 10-82 55-117 (131)
26 PRK13290 ectC L-ectoine syntha 98.4 1.4E-06 3E-11 72.3 8.2 55 17-82 54-108 (125)
27 PF01050 MannoseP_isomer: Mann 98.3 8.9E-06 1.9E-10 69.7 12.0 86 174-272 51-137 (151)
28 COG3837 Uncharacterized conser 98.3 5.3E-06 1.1E-10 70.4 9.0 82 186-275 37-122 (161)
29 COG4297 Uncharacterized protei 98.2 2.5E-06 5.4E-11 70.6 6.4 62 208-272 58-119 (163)
30 COG1791 Uncharacterized conser 98.2 9E-06 1.9E-10 69.8 9.7 67 10-82 87-153 (181)
31 PF03079 ARD: ARD/ARD' family; 98.2 5.9E-06 1.3E-10 71.1 8.7 66 10-82 84-150 (157)
32 PRK09943 DNA-binding transcrip 98.2 5.6E-06 1.2E-10 73.0 8.4 57 14-81 124-180 (185)
33 COG4101 Predicted mannose-6-ph 98.2 1.2E-05 2.7E-10 65.0 9.2 83 192-277 45-128 (142)
34 PRK15460 cpsB mannose-1-phosph 98.2 7.7E-06 1.7E-10 82.3 9.9 59 13-82 401-459 (478)
35 PF06560 GPI: Glucose-6-phosph 98.2 1.3E-05 2.7E-10 70.6 9.9 65 16-82 81-145 (182)
36 TIGR01479 GMP_PMI mannose-1-ph 98.1 1.3E-05 2.7E-10 80.8 10.2 58 14-82 393-450 (468)
37 PF06560 GPI: Glucose-6-phosph 98.1 3.2E-05 7E-10 68.0 11.5 86 188-273 45-146 (182)
38 TIGR01479 GMP_PMI mannose-1-ph 98.1 1.7E-05 3.7E-10 79.8 10.7 75 192-272 375-450 (468)
39 PRK11171 hypothetical protein; 98.1 1.3E-05 2.8E-10 74.9 8.9 60 14-84 201-260 (266)
40 PRK09943 DNA-binding transcrip 98.0 6E-05 1.3E-09 66.4 11.0 75 192-272 106-181 (185)
41 PF03079 ARD: ARD/ARD' family; 98.0 5.7E-05 1.2E-09 65.1 10.3 68 205-274 84-152 (157)
42 PRK15460 cpsB mannose-1-phosph 98.0 4.1E-05 8.8E-10 77.1 10.6 75 192-272 384-459 (478)
43 PF01050 MannoseP_isomer: Mann 97.9 8.8E-05 1.9E-09 63.5 9.4 56 15-81 81-136 (151)
44 TIGR03037 anthran_nbaC 3-hydro 97.8 5.9E-05 1.3E-09 64.8 7.2 51 208-260 41-92 (159)
45 COG4101 Predicted mannose-6-ph 97.8 8.3E-05 1.8E-09 60.3 7.4 59 15-81 64-122 (142)
46 PF11699 CENP-C_C: Mif2/CENP-C 97.8 0.0001 2.3E-09 56.9 7.4 53 17-80 32-84 (85)
47 PRK13264 3-hydroxyanthranilate 97.8 7E-05 1.5E-09 65.3 6.9 58 14-80 50-107 (177)
48 PF02311 AraC_binding: AraC-li 97.8 0.00012 2.5E-09 59.3 7.9 63 8-81 13-75 (136)
49 TIGR03037 anthran_nbaC 3-hydro 97.7 9.1E-05 2E-09 63.6 7.0 51 14-71 44-94 (159)
50 PRK13264 3-hydroxyanthranilate 97.7 0.00011 2.5E-09 64.0 7.6 57 201-260 42-98 (177)
51 PRK15457 ethanolamine utilizat 97.7 0.00042 9.1E-09 62.8 10.3 68 192-270 156-224 (233)
52 PRK15457 ethanolamine utilizat 97.6 0.00031 6.7E-09 63.6 8.2 57 12-81 169-225 (233)
53 PF11699 CENP-C_C: Mif2/CENP-C 97.6 0.0005 1.1E-08 53.1 8.2 71 192-268 11-82 (85)
54 COG1791 Uncharacterized conser 97.5 0.00064 1.4E-08 58.6 9.1 69 205-275 87-156 (181)
55 PF06339 Ectoine_synth: Ectoin 97.4 0.0016 3.6E-08 53.4 9.7 79 189-273 31-109 (126)
56 PF05523 FdtA: WxcM-like, C-te 97.4 0.0048 1E-07 51.5 12.6 96 173-272 14-111 (131)
57 PF12973 Cupin_7: ChrR Cupin-l 97.4 0.0014 3.1E-08 50.9 8.7 65 192-268 23-87 (91)
58 PF05899 Cupin_3: Protein of u 97.2 0.0011 2.5E-08 49.7 6.3 56 193-256 7-62 (74)
59 COG4297 Uncharacterized protei 97.2 0.0014 3E-08 54.6 6.8 66 7-81 51-118 (163)
60 PF02311 AraC_binding: AraC-li 97.1 0.0032 7E-08 50.7 9.0 61 202-269 12-73 (136)
61 TIGR02272 gentisate_1_2 gentis 97.1 0.0036 7.7E-08 60.3 9.9 75 192-272 80-155 (335)
62 PF02041 Auxin_BP: Auxin bindi 97.0 0.0036 7.9E-08 52.9 8.3 68 13-82 59-127 (167)
63 PRK05341 homogentisate 1,2-dio 97.0 0.019 4.1E-07 56.7 14.3 203 15-256 151-372 (438)
64 PRK13500 transcriptional activ 97.0 0.0019 4.1E-08 61.5 7.1 57 5-72 55-111 (312)
65 TIGR02451 anti_sig_ChrR anti-s 97.0 0.0029 6.4E-08 57.3 7.8 71 193-274 127-198 (215)
66 PF02041 Auxin_BP: Auxin bindi 96.9 0.016 3.4E-07 49.1 11.2 123 156-282 9-136 (167)
67 PF05899 Cupin_3: Protein of u 96.9 0.0029 6.3E-08 47.5 5.7 42 17-68 24-65 (74)
68 PRK13501 transcriptional activ 96.8 0.0032 6.9E-08 59.0 6.6 51 11-72 31-81 (290)
69 PF04209 HgmA: homogentisate 1 96.8 0.0057 1.2E-07 60.4 8.4 198 15-257 143-364 (424)
70 PF06339 Ectoine_synth: Ectoin 96.7 0.0092 2E-07 49.1 8.1 67 5-82 42-108 (126)
71 TIGR01015 hmgA homogentisate 1 96.7 0.025 5.4E-07 55.8 12.5 202 15-256 145-367 (429)
72 PF14499 DUF4437: Domain of un 96.7 0.0046 1E-07 57.1 6.9 72 192-269 35-107 (251)
73 PRK10296 DNA-binding transcrip 96.7 0.0082 1.8E-07 55.7 8.6 50 203-259 33-82 (278)
74 PF06052 3-HAO: 3-hydroxyanthr 96.6 0.0099 2.2E-07 50.4 7.8 49 17-72 52-100 (151)
75 PRK13502 transcriptional activ 96.5 0.0064 1.4E-07 56.6 6.9 57 5-72 25-81 (282)
76 PRK10296 DNA-binding transcrip 96.5 0.0091 2E-07 55.5 7.9 49 11-70 36-84 (278)
77 PRK10371 DNA-binding transcrip 96.5 0.0098 2.1E-07 56.4 8.2 59 195-260 28-86 (302)
78 PLN02658 homogentisate 1,2-dio 96.5 0.066 1.4E-06 53.0 13.8 204 15-256 144-366 (435)
79 KOG2107 Uncharacterized conser 96.5 0.0042 9E-08 53.3 4.7 66 9-81 84-150 (179)
80 PRK13500 transcriptional activ 96.5 0.013 2.8E-07 55.8 8.6 54 202-262 57-110 (312)
81 PRK13501 transcriptional activ 96.4 0.014 3E-07 54.7 8.4 49 205-260 30-78 (290)
82 PRK15131 mannose-6-phosphate i 96.4 0.12 2.5E-06 51.1 15.0 45 212-262 337-381 (389)
83 PF06249 EutQ: Ethanolamine ut 96.4 0.012 2.6E-07 50.3 7.0 58 192-258 76-133 (152)
84 PF06052 3-HAO: 3-hydroxyanthr 96.4 0.0098 2.1E-07 50.4 6.2 46 210-257 48-94 (151)
85 TIGR02297 HpaA 4-hydroxyphenyl 96.3 0.014 3.1E-07 54.2 7.6 54 201-260 31-84 (287)
86 COG3450 Predicted enzyme of th 96.3 0.017 3.7E-07 47.2 6.9 60 192-259 44-104 (116)
87 KOG2107 Uncharacterized conser 96.2 0.0061 1.3E-07 52.3 4.3 56 204-261 84-139 (179)
88 COG3450 Predicted enzyme of th 96.2 0.009 1.9E-07 48.8 5.0 42 17-68 62-103 (116)
89 TIGR01221 rmlC dTDP-4-dehydror 96.2 0.082 1.8E-06 46.4 11.4 71 201-271 52-131 (176)
90 TIGR00218 manA mannose-6-phosp 96.2 0.17 3.6E-06 48.2 14.2 61 193-262 235-295 (302)
91 PF06249 EutQ: Ethanolamine ut 96.1 0.016 3.4E-07 49.6 6.4 58 12-82 89-146 (152)
92 TIGR02297 HpaA 4-hydroxyphenyl 96.1 0.015 3.2E-07 54.1 7.0 58 10-78 35-93 (287)
93 PRK13503 transcriptional activ 96.1 0.0086 1.9E-07 55.4 5.0 55 6-71 23-77 (278)
94 PRK13502 transcriptional activ 96.0 0.036 7.7E-07 51.5 8.7 56 200-262 25-80 (282)
95 PF00908 dTDP_sugar_isom: dTDP 95.9 0.065 1.4E-06 47.1 9.3 72 201-272 51-132 (176)
96 COG4766 EutQ Ethanolamine util 95.9 0.043 9.3E-07 46.6 7.7 62 6-81 107-168 (176)
97 PRK10371 DNA-binding transcrip 95.9 0.021 4.6E-07 54.1 6.7 55 9-74 37-91 (302)
98 COG3435 Gentisate 1,2-dioxygen 95.8 0.021 4.4E-07 53.7 6.2 71 196-272 95-166 (351)
99 PRK13503 transcriptional activ 95.6 0.033 7.1E-07 51.5 7.0 54 201-261 23-76 (278)
100 PF13621 Cupin_8: Cupin-like d 95.6 0.068 1.5E-06 48.2 8.7 70 194-264 131-236 (251)
101 COG1898 RfbC dTDP-4-dehydrorha 95.4 0.26 5.7E-06 43.1 11.3 67 202-268 54-128 (173)
102 PF05523 FdtA: WxcM-like, C-te 95.0 0.17 3.6E-06 42.2 8.6 59 15-81 51-110 (131)
103 PF14499 DUF4437: Domain of un 94.8 0.2 4.3E-06 46.4 9.3 196 11-271 49-244 (251)
104 COG3508 HmgA Homogentisate 1,2 94.8 0.34 7.3E-06 46.6 10.8 200 16-256 144-364 (427)
105 PF12852 Cupin_6: Cupin 94.7 0.074 1.6E-06 46.5 5.9 46 18-72 35-80 (186)
106 PF08007 Cupin_4: Cupin superf 94.6 0.2 4.4E-06 47.9 9.1 73 194-267 114-205 (319)
107 TIGR02451 anti_sig_ChrR anti-s 94.4 0.073 1.6E-06 48.2 5.4 59 9-82 138-196 (215)
108 COG4766 EutQ Ethanolamine util 94.3 0.29 6.2E-06 41.7 8.1 58 192-258 99-156 (176)
109 PF12973 Cupin_7: ChrR Cupin-l 94.1 0.13 2.8E-06 39.8 5.4 55 7-78 33-87 (91)
110 PF04209 HgmA: homogentisate 1 93.9 0.28 6.1E-06 48.7 8.6 75 183-266 116-191 (424)
111 PRK10572 DNA-binding transcrip 93.4 0.3 6.5E-06 45.5 7.7 51 12-73 43-93 (290)
112 COG3257 GlxB Uncharacterized p 93.1 0.41 8.8E-06 43.2 7.5 171 17-272 82-256 (264)
113 PF13621 Cupin_8: Cupin-like d 93.1 0.59 1.3E-05 42.0 8.9 65 9-74 142-236 (251)
114 PRK05341 homogentisate 1,2-dio 92.7 1 2.2E-05 44.9 10.3 75 184-266 125-200 (438)
115 PLN02658 homogentisate 1,2-dio 92.3 1.1 2.4E-05 44.5 10.0 69 183-259 117-186 (435)
116 KOG3706 Uncharacterized conser 91.9 0.083 1.8E-06 52.6 1.7 85 173-258 286-401 (629)
117 PF12852 Cupin_6: Cupin 91.9 0.69 1.5E-05 40.3 7.4 43 214-260 35-77 (186)
118 PF02373 JmjC: JmjC domain, hy 91.8 0.4 8.8E-06 37.9 5.4 27 47-73 81-107 (114)
119 PF08007 Cupin_4: Cupin superf 91.7 0.71 1.5E-05 44.2 7.9 61 10-71 127-200 (319)
120 PF13759 2OG-FeII_Oxy_5: Putat 91.6 0.95 2.1E-05 35.5 7.3 73 198-270 5-100 (101)
121 PF05726 Pirin_C: Pirin C-term 90.4 1.9 4.2E-05 34.1 8.1 68 196-271 2-69 (104)
122 TIGR01015 hmgA homogentisate 1 89.9 1.6 3.5E-05 43.3 8.5 69 183-259 118-187 (429)
123 COG3257 GlxB Uncharacterized p 89.4 2.5 5.3E-05 38.3 8.5 70 193-268 61-132 (264)
124 KOG2757 Mannose-6-phosphate is 89.1 1.7 3.8E-05 42.1 7.8 72 192-270 332-404 (411)
125 TIGR02466 conserved hypothetic 88.2 1.9 4.1E-05 38.7 7.1 76 195-270 98-196 (201)
126 KOG3706 Uncharacterized conser 87.3 0.3 6.4E-06 48.8 1.5 55 11-66 331-400 (629)
127 PRK12335 tellurite resistance 84.7 3.2 6.9E-05 38.9 7.1 70 202-271 20-92 (287)
128 PRK15131 mannose-6-phosphate i 83.8 2.1 4.6E-05 42.2 5.7 56 241-304 240-295 (389)
129 PF02678 Pirin: Pirin; InterP 83.3 3.3 7.2E-05 33.3 5.6 61 10-80 41-105 (107)
130 PF00027 cNMP_binding: Cyclic 83.2 3.6 7.9E-05 30.2 5.6 47 6-57 5-51 (91)
131 PF00908 dTDP_sugar_isom: dTDP 82.4 9.9 0.00022 33.3 8.7 67 19-90 68-138 (176)
132 PF05995 CDO_I: Cysteine dioxy 82.0 22 0.00047 31.0 10.7 78 193-270 75-161 (175)
133 COG2850 Uncharacterized conser 81.0 3 6.5E-05 40.6 5.3 85 185-274 113-215 (383)
134 KOG2757 Mannose-6-phosphate is 80.6 3.1 6.8E-05 40.4 5.2 51 17-78 352-402 (411)
135 PRK10572 DNA-binding transcrip 80.5 5.7 0.00012 36.9 7.0 43 212-260 47-89 (290)
136 PLN02288 mannose-6-phosphate i 78.7 5.4 0.00012 39.5 6.4 59 192-255 333-391 (394)
137 COG3508 HmgA Homogentisate 1,2 77.7 22 0.00049 34.6 9.9 65 187-258 119-184 (427)
138 PF13464 DUF4115: Domain of un 77.6 18 0.0004 26.8 7.7 52 220-271 4-55 (77)
139 PRK09685 DNA-binding transcrip 77.5 7.3 0.00016 36.3 6.8 43 19-72 72-114 (302)
140 PRK13918 CRP/FNR family transc 77.3 8.1 0.00018 33.5 6.6 55 197-251 8-63 (202)
141 TIGR00218 manA mannose-6-phosp 76.9 6.8 0.00015 37.2 6.4 41 17-68 252-292 (302)
142 TIGR01221 rmlC dTDP-4-dehydror 76.8 26 0.00056 30.7 9.5 71 8-81 54-131 (176)
143 PF09313 DUF1971: Domain of un 76.3 23 0.00049 27.1 7.9 65 202-267 12-79 (82)
144 PRK09391 fixK transcriptional 76.2 21 0.00045 32.1 9.2 64 191-255 34-97 (230)
145 PF06172 Cupin_5: Cupin superf 75.8 32 0.0007 28.9 9.5 96 173-269 15-123 (139)
146 COG1898 RfbC dTDP-4-dehydrorha 74.7 34 0.00073 30.0 9.6 60 18-78 67-129 (173)
147 COG1741 Pirin-related protein 73.8 8.8 0.00019 36.1 6.2 60 197-261 48-109 (276)
148 PF02678 Pirin: Pirin; InterP 72.4 15 0.00032 29.5 6.4 61 203-268 39-103 (107)
149 PF00027 cNMP_binding: Cyclic 71.7 12 0.00026 27.3 5.4 35 214-248 17-51 (91)
150 PF02373 JmjC: JmjC domain, hy 71.6 8 0.00017 30.3 4.7 26 237-262 80-106 (114)
151 PRK11753 DNA-binding transcrip 70.8 33 0.00072 29.8 9.0 55 195-250 20-74 (211)
152 cd00038 CAP_ED effector domain 70.3 15 0.00033 27.5 6.0 56 195-251 17-72 (115)
153 KOG3995 3-hydroxyanthranilate 70.3 6.7 0.00015 35.3 4.2 46 17-69 52-97 (279)
154 PF05118 Asp_Arg_Hydrox: Aspar 70.1 24 0.00051 30.3 7.6 63 4-77 86-154 (163)
155 COG1482 ManA Phosphomannose is 70.0 7.1 0.00015 37.4 4.6 39 240-281 160-198 (312)
156 PRK09391 fixK transcriptional 67.9 30 0.00065 31.0 8.2 51 8-63 46-96 (230)
157 PRK11753 DNA-binding transcrip 65.1 43 0.00092 29.1 8.5 48 7-59 27-74 (211)
158 cd00038 CAP_ED effector domain 64.7 19 0.00041 26.9 5.5 48 7-59 24-71 (115)
159 PRK13918 CRP/FNR family transc 64.2 22 0.00047 30.8 6.3 38 17-60 25-63 (202)
160 PF05118 Asp_Arg_Hydrox: Aspar 63.4 48 0.001 28.4 8.2 63 194-264 81-151 (163)
161 KOG3995 3-hydroxyanthranilate 62.9 9.3 0.0002 34.5 3.6 47 209-257 47-94 (279)
162 COG5553 Predicted metal-depend 61.8 44 0.00096 29.0 7.4 84 193-277 73-176 (191)
163 smart00100 cNMP Cyclic nucleot 60.9 21 0.00045 26.8 5.1 55 196-251 18-72 (120)
164 PRK10402 DNA-binding transcrip 60.9 18 0.0004 32.3 5.4 55 196-251 32-86 (226)
165 PRK10402 DNA-binding transcrip 60.6 21 0.00046 31.8 5.8 49 7-60 38-86 (226)
166 PF14525 AraC_binding_2: AraC- 60.0 69 0.0015 26.4 8.5 49 19-78 56-104 (172)
167 TIGR03697 NtcA_cyano global ni 59.8 18 0.0004 30.9 5.0 37 214-250 11-47 (193)
168 COG2850 Uncharacterized conser 59.7 4.2 9.1E-05 39.6 1.0 24 49-72 181-204 (383)
169 PF05726 Pirin_C: Pirin C-term 57.6 74 0.0016 24.9 7.8 55 12-80 14-68 (104)
170 PF05995 CDO_I: Cysteine dioxy 56.9 65 0.0014 28.0 8.0 66 15-81 93-162 (175)
171 PF06865 DUF1255: Protein of u 55.7 51 0.0011 25.9 6.3 60 194-260 24-83 (94)
172 smart00100 cNMP Cyclic nucleot 55.2 39 0.00084 25.2 5.8 45 10-59 27-71 (120)
173 PRK09685 DNA-binding transcrip 52.6 50 0.0011 30.6 7.1 62 193-260 45-111 (302)
174 PRK00924 5-keto-4-deoxyuronate 52.5 83 0.0018 29.7 8.3 68 193-264 175-250 (276)
175 PRK14584 hmsS hemin storage sy 52.3 28 0.00061 29.9 4.7 36 105-140 97-139 (153)
176 PRK10579 hypothetical protein; 52.2 37 0.0008 26.7 4.9 58 195-259 25-82 (94)
177 PRK10579 hypothetical protein; 52.0 54 0.0012 25.8 5.9 52 10-70 29-84 (94)
178 COG3542 Uncharacterized conser 51.9 1.5E+02 0.0033 25.4 13.2 60 195-256 46-111 (162)
179 PF00166 Cpn10: Chaperonin 10 51.3 41 0.00089 26.0 5.2 53 201-257 20-73 (93)
180 COG1482 ManA Phosphomannose is 48.3 55 0.0012 31.4 6.5 40 17-67 259-298 (312)
181 KOG2130 Phosphatidylserine-spe 47.3 97 0.0021 29.9 7.8 98 175-277 191-303 (407)
182 PF03971 IDH: Monomeric isocit 47.1 32 0.00068 35.8 4.9 37 214-250 418-454 (735)
183 COG1741 Pirin-related protein 46.9 28 0.0006 32.8 4.2 41 185-227 166-206 (276)
184 TIGR03697 NtcA_cyano global ni 46.4 48 0.001 28.2 5.5 37 17-58 10-46 (193)
185 PF07385 DUF1498: Protein of u 45.7 2.3E+02 0.0051 25.8 9.7 69 196-264 90-180 (225)
186 PRK11161 fumarate/nitrate redu 45.5 45 0.00098 29.6 5.3 53 198-251 40-92 (235)
187 PRK02290 3-dehydroquinate synt 45.0 72 0.0016 31.0 6.7 57 193-249 267-323 (344)
188 PF06865 DUF1255: Protein of u 44.6 1.5E+02 0.0033 23.3 7.9 52 10-70 29-84 (94)
189 COG3542 Uncharacterized conser 44.0 2E+02 0.0044 24.7 8.4 78 17-106 63-148 (162)
190 PF13759 2OG-FeII_Oxy_5: Putat 42.5 64 0.0014 25.0 5.2 60 11-71 13-90 (101)
191 PF01959 DHQS: 3-dehydroquinat 42.3 87 0.0019 30.6 6.9 59 192-250 276-334 (354)
192 COG0664 Crp cAMP-binding prote 41.5 49 0.0011 28.2 4.8 60 194-254 22-81 (214)
193 PF11142 DUF2917: Protein of u 40.8 80 0.0017 22.7 5.0 44 17-69 15-58 (63)
194 PRK04043 tolB translocation pr 40.4 2E+02 0.0043 28.5 9.5 41 207-247 372-414 (419)
195 PF04115 Ureidogly_hydro: Urei 39.4 1.4E+02 0.0031 25.6 7.3 67 206-272 72-145 (165)
196 COG0664 Crp cAMP-binding prote 38.9 72 0.0016 27.1 5.4 40 17-61 40-79 (214)
197 COG3822 ABC-type sugar transpo 38.6 1.2E+02 0.0025 27.2 6.4 68 196-264 89-179 (225)
198 PF06172 Cupin_5: Cupin superf 38.6 2.4E+02 0.0051 23.7 10.0 66 10-80 53-124 (139)
199 PRK00364 groES co-chaperonin G 38.5 1.3E+02 0.0028 23.4 6.3 61 201-265 21-82 (95)
200 PF13464 DUF4115: Domain of un 38.5 1.6E+02 0.0034 21.6 7.4 49 23-77 3-51 (77)
201 PRK11161 fumarate/nitrate redu 38.4 88 0.0019 27.7 6.1 47 7-59 44-91 (235)
202 PLN02868 acyl-CoA thioesterase 38.3 76 0.0016 31.3 6.1 44 10-59 41-84 (413)
203 PF14326 DUF4384: Domain of un 38.1 1.5E+02 0.0033 22.1 6.5 55 216-271 21-77 (83)
204 PLN02288 mannose-6-phosphate i 38.0 21 0.00047 35.3 2.1 56 241-304 254-309 (394)
205 PF04962 KduI: KduI/IolB famil 38.0 86 0.0019 29.2 6.0 17 46-62 209-225 (261)
206 PRK09392 ftrB transcriptional 37.6 65 0.0014 28.7 5.1 46 7-58 37-82 (236)
207 PF14525 AraC_binding_2: AraC- 36.9 2.3E+02 0.005 23.1 8.7 41 214-260 55-95 (172)
208 PF11142 DUF2917: Protein of u 36.9 1.2E+02 0.0027 21.7 5.5 56 199-260 3-58 (63)
209 PF02796 HTH_7: Helix-turn-hel 36.6 40 0.00086 22.3 2.6 25 105-129 20-44 (45)
210 PLN02868 acyl-CoA thioesterase 35.1 75 0.0016 31.4 5.5 55 195-251 31-85 (413)
211 PF07847 DUF1637: Protein of u 34.4 33 0.00072 30.7 2.5 86 187-272 38-142 (200)
212 PRK03606 ureidoglycolate hydro 34.3 2.6E+02 0.0056 24.2 8.0 67 205-271 70-141 (162)
213 PRK12335 tellurite resistance 34.3 1.5E+02 0.0032 27.6 7.1 58 8-70 21-81 (287)
214 PF10313 DUF2415: Uncharacteri 32.2 62 0.0014 21.7 3.0 31 203-233 1-33 (43)
215 PF04970 LRAT: Lecithin retino 31.8 35 0.00075 27.7 2.1 26 240-265 5-32 (125)
216 TIGR00178 monomer_idh isocitra 31.5 43 0.00092 34.9 3.0 36 214-249 422-457 (741)
217 PHA02951 Hypothetical protein; 31.3 1.5E+02 0.0032 28.4 6.3 44 213-257 123-166 (337)
218 KOG2968 Predicted esterase of 29.8 27 0.00058 38.1 1.3 62 186-248 499-560 (1158)
219 COG3123 Uncharacterized protei 29.0 2.1E+02 0.0046 22.1 5.7 42 18-68 41-82 (94)
220 PRK14585 pgaD putative PGA bio 28.1 68 0.0015 27.0 3.2 26 289-314 88-113 (137)
221 PF06251 Caps_synth_GfcC: Caps 27.9 69 0.0015 29.0 3.5 36 216-252 167-203 (229)
222 cd06919 Asp_decarbox Aspartate 27.8 28 0.00061 28.2 0.8 37 214-252 52-88 (111)
223 COG0853 PanD Aspartate 1-decar 27.8 36 0.00078 28.1 1.5 37 214-252 52-88 (126)
224 PF04962 KduI: KduI/IolB famil 27.4 3E+02 0.0064 25.7 7.7 49 20-80 49-105 (261)
225 PHA02984 hypothetical protein; 25.7 3.9E+02 0.0084 25.2 7.9 53 20-80 95-147 (286)
226 TIGR00223 panD L-aspartate-alp 25.6 32 0.0007 28.5 0.8 37 214-252 53-89 (126)
227 PRK05449 aspartate alpha-decar 25.4 33 0.00071 28.4 0.9 37 214-252 53-89 (126)
228 PHA02699 hypothetical protein; 24.4 1.6E+02 0.0034 29.0 5.3 57 19-81 168-226 (466)
229 KOG0544 FKBP-type peptidyl-pro 24.3 2.2E+02 0.0047 22.7 5.1 67 226-301 4-70 (108)
230 PHA02984 hypothetical protein; 24.1 3.9E+02 0.0085 25.1 7.7 53 214-268 91-145 (286)
231 PF06413 Neugrin: Neugrin; In 23.7 65 0.0014 29.4 2.6 25 107-131 30-54 (225)
232 cd04456 S1_IF1A_like S1_IF1A_l 23.7 3.2E+02 0.0069 20.5 5.9 28 223-250 11-47 (78)
233 PHA02890 hypothetical protein; 23.6 3.8E+02 0.0082 25.1 7.4 42 21-69 95-136 (278)
234 TIGR02466 conserved hypothetic 22.7 3E+02 0.0065 24.5 6.6 60 10-70 108-185 (201)
235 COG1465 Predicted alternative 22.6 3.3E+02 0.0071 26.2 6.9 57 194-250 300-356 (376)
236 COG0490 Putative regulatory, l 22.2 95 0.0021 26.9 3.1 31 17-59 113-143 (162)
237 KOG0641 WD40 repeat protein [G 20.8 4.4E+02 0.0095 24.4 7.1 60 193-252 232-291 (350)
238 PF02927 CelD_N: N-terminal ig 20.6 1.5E+02 0.0032 22.7 3.7 36 209-244 17-55 (91)
239 PRK14585 pgaD putative PGA bio 20.6 1.1E+02 0.0023 25.8 3.0 26 105-130 88-113 (137)
240 PF13613 HTH_Tnp_4: Helix-turn 20.5 86 0.0019 21.4 2.1 23 106-128 19-41 (53)
241 PF04943 Pox_F11: Poxvirus F11 20.5 2.5E+02 0.0054 27.6 5.8 56 20-81 118-175 (366)
242 PRK13395 ureidoglycolate hydro 20.2 5.8E+02 0.013 22.2 7.9 69 205-273 70-144 (171)
243 PRK09392 ftrB transcriptional 20.2 1.5E+02 0.0033 26.2 4.3 54 195-250 30-83 (236)
244 KOG2131 Uncharacterized conser 20.2 1.2E+02 0.0025 29.9 3.5 64 195-260 199-290 (427)
245 KOG1633 F-box protein JEMMA an 20.1 93 0.002 33.7 3.2 36 239-274 197-233 (776)
246 PHA02951 Hypothetical protein; 20.1 3.1E+02 0.0068 26.3 6.2 57 19-81 125-183 (337)
No 1
>PLN00212 glutelin; Provisional
Probab=100.00 E-value=4.8e-70 Score=537.79 Aligned_cols=315 Identities=26% Similarity=0.431 Sum_probs=284.5
Q ss_pred cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC--------------------CCcceEEEEeeCCcEEEeCCCCe
Q 020545 5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK--------------------HSQEEIVLGLRKGDVIPVPLGSA 64 (325)
Q Consensus 5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~--------------------~~~~~~~~~l~~GDv~~vP~G~~ 64 (325)
+.+++|++|||++|++++||++|+ |++|+|.|+|++ .|.++++++|++||||+||+|++
T Consensus 87 i~p~gL~lP~y~na~~liyV~qG~-G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~ 165 (493)
T PLN00212 87 IEPQGLLLPRYSNTPGLVYIIQGR-GSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVA 165 (493)
T ss_pred ecCCcccCccccCCCeEEEEEeCe-EEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCe
Confidence 467899999999999999999999 999999998843 24577889999999999999999
Q ss_pred EEEEecCCCCEEEEEEeecCCCCC--CCcceeeeecccc-----------------ccccCCChhHHhhhcCCCHHHHHH
Q 020545 65 SWWYNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGAQ-----------------GILGGFSSEFTGRAYNMNENEAKI 125 (325)
Q Consensus 65 ~~~~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~~-----------------s~l~~f~~~vLa~af~v~~~~~~~ 125 (325)
||+||+|++++++++++|+++..| +..++.|||||+. |+|+||++++|++||||+.++++|
T Consensus 166 hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~k 245 (493)
T PLN00212 166 HWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKR 245 (493)
T ss_pred EEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHH
Confidence 999999999999999999988776 2346899999973 599999999999999999999999
Q ss_pred HhcccCc-eeEEEecCCcCCCCcccCCC-------------------------C-----C-------CCceeeeecC-CC
Q 020545 126 LAKSQTG-VLIIKLGQDESEKIPLPHQH-------------------------G-----N-------ANLMVNNFAN-FP 166 (325)
Q Consensus 126 l~~~q~~-~~Iv~~~~~~~~~~~~~~p~-------------------------~-----~-------~~~~~~nl~~-~~ 166 (325)
|++++++ +.|||++. ++.++.|. . . ..+.++|+++ .+
T Consensus 246 lq~~~d~rG~IVrv~~----~l~~~~P~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ 321 (493)
T PLN00212 246 LQSQNDQRGEIIRVKN----GLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSR 321 (493)
T ss_pred HhccccCCccEEEECC----CcccCCCchhhhhHHHHhhhhcccccchhhhccccccCCCCccccccccccccccCCccc
Confidence 9988755 79999986 22222220 0 0 2256788877 56
Q ss_pred CCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCcc
Q 020545 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQ 246 (325)
Q Consensus 167 p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gd 246 (325)
+|++++.+|+++.+++.+||+|+++|||+.+++|.+|||+.||||+||++|+||++|+++++||+++|+++|+.+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEecCCC
Q 020545 247 LLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPK 324 (325)
Q Consensus 247 v~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p~ 324 (325)
|||||+||+|.+.|++++++|++|.+++++..++|||++|+|++||.+||++||+++++++++|+.++.++.++++|+
T Consensus 402 vfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e~~~~~p~ 479 (493)
T PLN00212 402 LLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFRALPVDVIANAYRISREEARRLKNNRGDELGAFTPR 479 (493)
T ss_pred EEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCceeecCCC
Confidence 999999999999999999999999999998889999999999999999999999999999999999988889999986
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=100.00 E-value=1e-45 Score=357.14 Aligned_cols=287 Identities=15% Similarity=0.169 Sum_probs=239.1
Q ss_pred cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545 5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS 84 (325)
Q Consensus 5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~ 84 (325)
|++..+.-||++.+.|+.||++|+ .++++++.++ +.+.+.|++||+++||+|.+|+++|.+ ++++++++++.+
T Consensus 74 l~pG~~~~~HwH~~~E~~yVl~G~-~~v~~~d~~g-----~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~ 146 (367)
T TIGR03404 74 LEPGAIRELHWHKEAEWAYVLYGS-CRITAVDENG-----RNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDG 146 (367)
T ss_pred EcCCCCCCcccCCCceEEEEEeeE-EEEEEEcCCC-----cEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCc
Confidence 567788889988889999999999 9999998764 666678999999999999999999995 568888888654
Q ss_pred CCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc-ccCCCCC-CCceeeee
Q 020545 85 RAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP-LPHQHGN-ANLMVNNF 162 (325)
Q Consensus 85 ~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~-~~~p~~~-~~~~~~nl 162 (325)
....+. .+.++ ++|+.+|++||+++|+++++++++|++.+ .+|+....+...... ...|.+. .+.++|++
T Consensus 147 ~f~~~~---~~~~~---~~l~~~p~~Vla~~f~l~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (367)
T TIGR03404 147 NFSEDG---TFLVT---DWLAHTPKDVLAKNFGVPESAFDNLPLKE--LYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHL 218 (367)
T ss_pred ccCCcc---eeeHH---HHHHhCCHHHHHHHhCCCHHHHHhccccC--ceEEecCCCCccccccCcCCCCCCCccEEEEh
Confidence 433332 44443 67888999999999999999999999876 468866432211111 1112222 45789999
Q ss_pred cCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEe
Q 020545 163 ANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEV 242 (325)
Q Consensus 163 ~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l 242 (325)
.+.+|.. ..||+++.+++.+||+++ +++++.++|.||++++||||++++||.||++|++++++++++|+ ....+|
T Consensus 219 ~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~-~~~~~l 293 (367)
T TIGR03404 219 SEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGN-ARTFDY 293 (367)
T ss_pred hhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCc-EEEEEE
Confidence 9999843 368999999999999998 48999999999999999999999999999999999999998874 234579
Q ss_pred cCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545 243 EAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENV 314 (325)
Q Consensus 243 ~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~ 314 (325)
++||+++||+|..|++.| |+++++++.++++..+....| ++||..+|++||+++|+++++++++|++.+
T Consensus 294 ~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~ 363 (367)
T TIGR03404 294 QAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKEK 363 (367)
T ss_pred CCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence 999999999999998655 889999999999998887777 699999999999999999999999998764
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.94 E-value=1.1e-26 Score=197.19 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=108.0
Q ss_pred eeecCCCCCeeccCCeEEEEEcCCCCccccc-ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc---
Q 020545 160 NNFANFPADFCVKKAGMVTSFTGSNFPFLEQ-VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK--- 235 (325)
Q Consensus 160 ~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~-~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~--- 235 (325)
||+.+.+|.+. +++|+++.+++.++|+|.. .++++.++.|+||||++|||| +|++|.||++|+++++++++++.
T Consensus 1 fn~~~~~~~~~-~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~ 78 (144)
T PF00190_consen 1 FNLREPRPRVS-NEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEE 78 (144)
T ss_dssp EETCSSSEEEE-ETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSE
T ss_pred CCCCCCCCccc-CCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcccc
Confidence 78888888765 4799999999999995444 466666777799999999999 99999999999999999999862
Q ss_pred -eEEeEE--ecCccEEEECCccEEEEEcC-CCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHH
Q 020545 236 -LVLDSE--VEAGQLLVVPRCFVVAIIAG-PEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFL 307 (325)
Q Consensus 236 -~~~~~~--l~~Gdv~vvP~G~~h~~~~g-~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v 307 (325)
+.+..+ +++|||++||+|++||+.|. +++...+.++.+.++... +|++|++++|+++.+++
T Consensus 79 ~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-----------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 79 FRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-----------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-----------SSHHHHHHHEESSHHHH
T ss_pred ceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-----------CCcHHHHHhcCCCcCcC
Confidence 455566 99999999999999998885 355444444444444321 89999999999999875
No 4
>PLN00212 glutelin; Provisional
Probab=99.94 E-value=7.7e-26 Score=224.04 Aligned_cols=159 Identities=16% Similarity=0.284 Sum_probs=133.1
Q ss_pred eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545 161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL- 238 (325)
Q Consensus 161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~- 238 (325)
+|.+.+|+.. ..+||.+..|| .+.+.|+|+|+++.|++|+|+|+++|||| ||++++||++|+|.++++.|+|..++
T Consensus 48 ~l~a~ep~~ri~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~ 125 (493)
T PLN00212 48 RLQAFEPLRKVRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQ 125 (493)
T ss_pred ccccCCCchhhcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhh
Confidence 4555667643 35899999999 66899999999999999999999999997 99999999999999999998764333
Q ss_pred ---e--------------------EEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc--
Q 020545 239 ---D--------------------SEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK-- 284 (325)
Q Consensus 239 ---~--------------------~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~-- 284 (325)
. ++|++|||++||+|++||++| |+++++++.+++..| +..+||||.
T Consensus 126 ~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~ 205 (493)
T PLN00212 126 QQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNN 205 (493)
T ss_pred hhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCc
Confidence 1 489999999999999999877 778887776665433 457889996
Q ss_pred ---------------cccccCCCHHHHHHHcCCCHHHHHHhhhccC-CceEec
Q 020545 285 ---------------QSVMNGFSASVVQLALNVNEEFLKFFKENVA-TSEILI 321 (325)
Q Consensus 285 ---------------~svl~~~~~evla~af~v~~~~v~~l~~~~~-~~~i~~ 321 (325)
+++|++|++++|++|||++.+++++|+..++ .+.|+.
T Consensus 206 ~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVr 258 (493)
T PLN00212 206 RQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIR 258 (493)
T ss_pred cccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEE
Confidence 3599999999999999999999999997763 355653
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.90 E-value=1.9e-22 Score=171.48 Aligned_cols=138 Identities=28% Similarity=0.496 Sum_probs=125.2
Q ss_pred eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEE
Q 020545 170 CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLV 249 (325)
Q Consensus 170 ~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~v 249 (325)
++.++|+++.+++.++|.+++.++.+.++++.||++..||||+++.|+.||++|++.+.+.+..|++.....+++||+++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999876677778899999999
Q ss_pred ECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHH
Q 020545 250 VPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFL 307 (325)
Q Consensus 250 vP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v 307 (325)
||+|..|+..| ++++++++.+..++.+..++++|.+++|.+|++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence 99999998766 67889998776665556678899899999999999999999999875
No 6
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.88 E-value=5.7e-22 Score=191.94 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=124.0
Q ss_pred ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545 157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL 236 (325)
Q Consensus 157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~ 236 (325)
++.|++...++. .||++++++..+||+|+. +++.+++|.|||+++|||| ++.||.||++|++++++++.+|+
T Consensus 37 ~~~~~~~~~~~~----~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~- 108 (367)
T TIGR03404 37 KWSFSDSHNRLE----NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGR- 108 (367)
T ss_pred eeeeccccCccc----cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCc-
Confidence 456666655543 589999999999999986 6999999999999999999 56799999999999999998764
Q ss_pred EEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCC---CceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhc
Q 020545 237 VLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTR---PALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKEN 313 (325)
Q Consensus 237 ~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~---p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~ 313 (325)
.+..+|++||+++||+|.+|++.+.+++++++.+++... +..+.+ +++|+.+|++||+++|+++++++++|++.
T Consensus 109 ~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~~~---~~~l~~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 109 NYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTFLV---TDWLAHTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred EEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCcceeeH---HHHHHhCCHHHHHHHhCCCHHHHHhcccc
Confidence 565589999999999999999877667788888777754 233334 57788899999999999999999999876
Q ss_pred c
Q 020545 314 V 314 (325)
Q Consensus 314 ~ 314 (325)
+
T Consensus 186 ~ 186 (367)
T TIGR03404 186 E 186 (367)
T ss_pred C
Confidence 4
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=160.25 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=156.8
Q ss_pred ChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCC--CcccCC-CCCCCceeeeecCCCCCeeccCCeEEEEEcCCC
Q 020545 108 SSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEK--IPLPHQ-HGNANLMVNNFANFPADFCVKKAGMVTSFTGSN 184 (325)
Q Consensus 108 ~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~--~~~~~p-~~~~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~ 184 (325)
+.+++.+.|+++.+++..+..++ .+|.|.+.++... ...-.+ ......+.|.+...+|... +|.++......
T Consensus 2 ~~~~~~~~~~vd~~~~~~~p~~~--~~i~~~~~~~~l~~d~~~~~~~~~~~~~~~yel~~~~~~~~---~g~L~~~~t~~ 76 (209)
T COG2140 2 PKLFEPKNFGVDVRTGKLLPLKQ--VYIKRGSDPGGLYADEDAYSMLRKKEDDFVYELLESEPGER---GGDLRLDVTRI 76 (209)
T ss_pred CceeccccccchhhhhhcCCccc--eeEEeccCCcccccCHHHHHHhcCCCCceEEEeeccccccc---CCeEEEEeecc
Confidence 56788999999999988887776 4687766643110 000000 0124579999999888763 89999999999
Q ss_pred CcccccccceEEEEEecCCCccCCeecCCCCE--EEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-C
Q 020545 185 FPFLEQVGLSCTILKLDANAMLSPTYTADSVQ--VFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-G 261 (325)
Q Consensus 185 ~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~e--i~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g 261 (325)
+|.. +.+.+.+.||+|++.||||+|+| |.||++|+|++.+..++|+ ....++++||+++||.++.|+..| |
T Consensus 77 ~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~iyVPp~~gH~t~N~G 150 (209)
T COG2140 77 FPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVIYVPPGYGHYTINTG 150 (209)
T ss_pred CCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCc-EEEEEecCCcEEEeCCCcceEeecCC
Confidence 9886 56778999999999999999999 9999999999999999985 455689999999999999999665 8
Q ss_pred CCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccC
Q 020545 262 PEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315 (325)
Q Consensus 262 ~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~ 315 (325)
+++++++.++..+.+....+ ..++.+++..+++..|+.+....+.++.+..
T Consensus 151 d~pLvf~~v~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p~~~~~ 201 (209)
T COG2140 151 DEPLVFLNVYPADAGQDYDL---IAWLGGMPPVLVENGLNKNPKYVDVPRIKFA 201 (209)
T ss_pred CCCEEEEEEEeCCCCceeee---eehhccCCceeeccccccCcccccCcccccc
Confidence 89999999998888776566 6888999999999999999888777755443
No 8
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.76 E-value=2.9e-18 Score=145.39 Aligned_cols=101 Identities=20% Similarity=0.352 Sum_probs=78.1
Q ss_pred cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEE--EeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVL--GLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~--~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
+++++++.|||++|++|.||++|+ |+++++.+++.....+.... ++++|||++||+|++||++|+++++...+.+++
T Consensus 41 i~pg~~~~Ph~h~a~~i~~V~~G~-~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~ 119 (144)
T PF00190_consen 41 IEPGGLRAPHYHNADEIVYVIEGR-GRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFD 119 (144)
T ss_dssp EETTEEEEEEEESSEEEEEEEESE-EEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEE
T ss_pred hhcCCccceeEeeeeEEeeeeccc-eEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEE
Confidence 478999999977999999999999 99999999851000012233 499999999999999999999977666666665
Q ss_pred cCCCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHH
Q 020545 83 TSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEA 123 (325)
Q Consensus 83 ~~~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~ 123 (325)
+++..+ .+|++||+++|+++.++.
T Consensus 120 ~~~~~~-----------------~l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 120 TNNPPN-----------------QLPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp ESSTTG-----------------ESSHHHHHHHEESSHHHH
T ss_pred CCCCcc-----------------cCCcHHHHHhcCCCcCcC
Confidence 543221 199999999999999874
No 9
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.65 E-value=1.6e-15 Score=128.87 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=89.1
Q ss_pred ccceeecccc-CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545 6 YVHIIVCLTE-NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS 84 (325)
Q Consensus 6 ~~~~~~~p~h-~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~ 84 (325)
.+.....||+ .++.|++||++|+ +.+.+.++++ .+++.+.+++||+++||+|..||+.|.++++++++++. ..
T Consensus 38 ~pg~~~~~h~H~~~~e~~~Vl~G~-~~~~~~~~~~----~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~-~~ 111 (146)
T smart00835 38 EPGGMLPPHYHPRATELLYVVRGE-GRVGVVDPNG----NKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFN-TN 111 (146)
T ss_pred cCCcCcCCeeCCCCCEEEEEEeCe-EEEEEEeCCC----CeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEe-cC
Confidence 4455667884 4689999999999 9999987643 25567899999999999999999999999999999754 32
Q ss_pred CCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHH
Q 020545 85 RAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEA 123 (325)
Q Consensus 85 ~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~ 123 (325)
+|. ..|+++|..++|++|++++++++|+++.+++
T Consensus 112 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 112 ---DPN--RRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ---CCC--ceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence 232 4688888889999999999999999999875
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.40 E-value=8e-11 Score=109.44 Aligned_cols=176 Identities=16% Similarity=0.199 Sum_probs=116.1
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY 94 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~ 94 (325)
|....+.+||++|+ ..+.+ ++ + .+.|++||.+++|+|..|.+.|.++++++++.+.. .
T Consensus 77 ~~g~ee~iyVl~G~-l~v~~---~g------~-~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k-----------~ 134 (260)
T TIGR03214 77 GEGIETFLFVISGE-VNVTA---EG------E-THELREGGYAYLPPGSKWTLANAQAEDARFFLYKK-----------R 134 (260)
T ss_pred CCceEEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEe-----------e
Confidence 33457999999999 88876 42 3 57999999999999999999999999999988762 2
Q ss_pred ee-eccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccC
Q 020545 95 FL-LTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKK 173 (325)
Q Consensus 95 f~-laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~ 173 (325)
|. +. +. .. ...++. +.. .. .+ ..+ + ...
T Consensus 135 y~~~~-------g~---------------------~~-~~~vvg-~~~---dv---~~------~~~------~---g~~ 163 (260)
T TIGR03214 135 YQPVE-------GL---------------------HA-PELVVG-NEK---DI---EP------EPY------E---GMD 163 (260)
T ss_pred eEEcC-------CC---------------------CC-CCeeec-CHH---HC---Cc------ccc------C---CCC
Confidence 21 11 11 00 011111 110 00 00 000 0 012
Q ss_pred CeEEEEEcCCCCcccccccceEEEEEecCCCccCC-eecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP-TYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~P-h~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
+..++.+-+++. .. ++.+..++++||+-... |.|. -.+..||++|+|.+.+ +|+ . .++++||+++||+
T Consensus 164 ~~~~~~llp~~~---~~-~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g~-~--~~V~~GD~i~i~~ 232 (260)
T TIGR03214 164 DVILTTLLPKEL---AF-DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DNN-W--VPVEAGDYIWMGA 232 (260)
T ss_pred cEEEEEeCchhc---CC-CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CCE-E--EEecCCCEEEECC
Confidence 233433332222 22 56788899999999874 5555 4466699999999854 332 2 3699999999999
Q ss_pred ccEEEEEc-CCCCEEEEEEeCCC
Q 020545 253 CFVVAIIA-GPEGIECFSITTST 274 (325)
Q Consensus 253 G~~h~~~~-g~~~~~~~~~~~s~ 274 (325)
+.+|+..| |+++++++--.+-+
T Consensus 233 ~~~h~~~~~G~~~~~~l~ykd~n 255 (260)
T TIGR03214 233 YCPQACYAGGRGEFRYLLYKDMN 255 (260)
T ss_pred CCCEEEEecCCCcEEEEEEcccc
Confidence 99999877 78889988765543
No 11
>PRK11171 hypothetical protein; Provisional
Probab=99.36 E-value=2e-10 Score=107.20 Aligned_cols=179 Identities=18% Similarity=0.251 Sum_probs=119.1
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY 94 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~ 94 (325)
|....|+.||++|+ +.+.+ ++ + .+.|++||.+++|++.+|.+.|.++++++++++.. ...|
T Consensus 80 ~~~~eE~~~VlsG~-l~v~~---~g------~-~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~---~y~~----- 140 (266)
T PRK11171 80 DEGAETFLFVVEGE-ITLTL---EG------K-THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK---RYEP----- 140 (266)
T ss_pred CCCceEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc---CCeE-----
Confidence 33568999999999 88887 42 3 58999999999999999999999999999998862 1111
Q ss_pred eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccCC
Q 020545 95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKA 174 (325)
Q Consensus 95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~g 174 (325)
+. +.. .. ..|+.-.. . +...+. ....|
T Consensus 141 --~~-------~~~---------------------~p-~~~~~~~~----d----------------~~~~~~--~g~~g 167 (266)
T PRK11171 141 --VE-------GHE---------------------AP-EAFVGNES----D----------------IEPIPM--PGTDG 167 (266)
T ss_pred --cC-------CCC---------------------CC-CeEecchh----c----------------cccccc--CCCCC
Confidence 00 110 00 11221111 0 000000 01122
Q ss_pred eEEEE--EcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 175 GMVTS--FTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 175 G~~~~--~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
..++. +++.+. ..++.+..++|.||+-...|-|....|..||++|++.+.+ ++ +. ..|++||++.+|.
T Consensus 168 ~~~~~~~~~p~~~----~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~-~~--~~l~~GD~i~~~~ 237 (266)
T PRK11171 168 VWATTRLVDPEDL----RFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NN-DW--VEVEAGDFIWMRA 237 (266)
T ss_pred eEEEEEeeCchhc----CCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CC-EE--EEeCCCCEEEECC
Confidence 22222 222111 1235788999999998888523457799999999999975 23 23 3699999999999
Q ss_pred ccEEEEEc-CCCCEEEEEEeCCCC
Q 020545 253 CFVVAIIA-GPEGIECFSITTSTR 275 (325)
Q Consensus 253 G~~h~~~~-g~~~~~~~~~~~s~~ 275 (325)
+.+|+..| |++.++++...+-++
T Consensus 238 ~~~h~~~N~g~~~~~yl~~k~~nr 261 (266)
T PRK11171 238 YCPQACYAGGPGPFRYLLYKDVNR 261 (266)
T ss_pred CCCEEEECCCCCcEEEEEEccccc
Confidence 99999766 888899988776543
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.09 E-value=4.1e-10 Score=99.83 Aligned_cols=99 Identities=24% Similarity=0.309 Sum_probs=80.2
Q ss_pred cccCCCCe--EEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545 13 LTENDLHV--IPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG 90 (325)
Q Consensus 13 p~h~~a~e--i~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~ 90 (325)
+-|++++| |+||++|+ |.+.+-.+++ +..+.++++||+++||++..|+..|+|+++|+++.++... ..
T Consensus 96 H~Hp~ade~E~y~vi~G~-g~m~v~~~~G-----~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~---~~- 165 (209)
T COG2140 96 HYHPNADEPEIYYVLKGE-GRMLVQKPEG-----EARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD---AG- 165 (209)
T ss_pred ccCCCCCcccEEEEEecc-EEEEEEcCCC-----cEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC---CC-
Confidence 33788887 99999999 9999988876 6678999999999999999999999999999999998432 12
Q ss_pred cceeeeeccccccccCCChhHHhhhcCCCHHHHHHH
Q 020545 91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKIL 126 (325)
Q Consensus 91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l 126 (325)
+.+.+. .++++++..+++..|+.+....|.+
T Consensus 166 --~~y~~~---~~~~~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 166 --QDYDLI---AWLGGMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred --ceeeee---ehhccCCceeeccccccCcccccCc
Confidence 233333 6778899999999987776655544
No 13
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.03 E-value=3.7e-09 Score=101.08 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=120.3
Q ss_pred ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCc
Q 020545 12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGE 91 (325)
Q Consensus 12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~ 91 (325)
.||-+.+..+.||++|+ |..+.| ++ + ....++||+|++|.+.-|-..|.+++++..+.+.|..-..
T Consensus 95 ~~HRht~sAl~~vveG~-G~~t~V--~g------~-~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~Pl~~---- 160 (335)
T TIGR02272 95 PSHRHTQSALRFIVEGK-GAFTAV--DG------E-RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDIPLVQ---- 160 (335)
T ss_pred CccccccceEEEEEEcC-ceEEEE--CC------E-EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCHHHHH----
Confidence 45666788999999999 976666 32 3 4789999999999999999999999998887766531110
Q ss_pred ceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecC-------
Q 020545 92 FSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFAN------- 164 (325)
Q Consensus 92 ~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~------- 164 (325)
+ | |. +.+-..+.+.- ..-.-+.+...+ .......+.... +. ...| -+.|....
T Consensus 161 ---~-l-~~-~f~e~~~~~~~-~~~~~~~~~~~~-----~g~~l~P~~~~~-~~--~~sP-----~~~ypw~~~~~aL~~ 220 (335)
T TIGR02272 161 ---L-F-DC-SFAEGYPEDQQ-PVTRPEGDSLAR-----YGHNMLPVRHKR-SD--RSSP-----IFNYPYERSREALDD 220 (335)
T ss_pred ---h-h-Cc-ceecccccccc-ccccCCcchhhh-----cccCcccccccc-CC--CCCC-----ceecCcHHHHHHHHH
Confidence 0 0 00 11111111000 000000000000 000111111100 00 0011 12222211
Q ss_pred ----CCCCeeccCCeEEEEEcCCCCc-ccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEe
Q 020545 165 ----FPADFCVKKAGMVTSFTGSNFP-FLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLD 239 (325)
Q Consensus 165 ----~~p~~~~~~gG~~~~~~~~~~p-~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~ 239 (325)
.+++-. +|=.+..+++.+-+ .+.++ +.....|.+|....+|=| .+..|.||++|+|++.| ++ +.+
T Consensus 221 ~~~~~~~~~~--~g~~l~y~NP~TG~~~~pti--~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~-~~~- 290 (335)
T TIGR02272 221 LTRTGEWDPW--HGLKLRYVNPATGGYPMPTI--GAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GD-AVF- 290 (335)
T ss_pred HHhccCCCCC--ceEEEEEeCCCCCCCcchhH--HHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CC-EEE-
Confidence 022211 23345666655544 34443 445567888888888876 46799999999999998 33 445
Q ss_pred EEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545 240 SEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT 271 (325)
Q Consensus 240 ~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~ 271 (325)
+.++||+|+||..+.|...+. +++.++.+.
T Consensus 291 -~W~~gD~f~vPsW~~~~h~a~-~da~Lf~~~ 320 (335)
T TIGR02272 291 -RFSPKDVFVVPSWHPVRFEAS-DDAVLFSFS 320 (335)
T ss_pred -EecCCCEEEECCCCcEecccC-CCeEEEEec
Confidence 599999999999988655443 455555543
No 14
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.91 E-value=2.6e-08 Score=88.35 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=71.1
Q ss_pred cccccceEEEEEecCCCc------cCCeecCCCC--EEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545 188 LEQVGLSCTILKLDANAM------LSPTYTADSV--QVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII 259 (325)
Q Consensus 188 L~~~gis~~~v~l~pg~~------~~Ph~h~~A~--ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~ 259 (325)
++.-++.+....|.||.. ..+|||++++ |+.||++|+|.+.+-+.+|. .....+++||+++||+|+.|...
T Consensus 63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-ARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EEEEEECCCCEEEECCCCcEEeE
Confidence 445578999999999995 6679999664 99999999999999777654 33457999999999999999865
Q ss_pred c-CCCCEEEEEEeCCC
Q 020545 260 A-GPEGIECFSITTST 274 (325)
Q Consensus 260 ~-g~~~~~~~~~~~s~ 274 (325)
| |+++++++.+....
T Consensus 142 N~G~epl~fl~v~p~~ 157 (191)
T PRK04190 142 NTGDEPLVFLACYPAD 157 (191)
T ss_pred ECCCCCEEEEEEEcCC
Confidence 5 88899998887653
No 15
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=4.7e-09 Score=87.26 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=53.3
Q ss_pred ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
+++|...+|+.||++|+ |.+.+ ++ + ...|++||.++||+|+.|++.|.|+.+|+++++..
T Consensus 51 ~~~H~~~dE~~~Vl~G~-g~v~~---~~------~-~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~ 110 (127)
T COG0662 51 LHHHHHRDEHWYVLEGT-GKVTI---GG------E-EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS 110 (127)
T ss_pred cccccCcceEEEEEeeE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence 45566799999999999 99998 53 3 58899999999999999999999999999999864
No 16
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.90 E-value=6e-09 Score=76.74 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=58.8
Q ss_pred EEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEe
Q 020545 197 ILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSIT 271 (325)
Q Consensus 197 ~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~ 271 (325)
+++|.||+-..+|+|+...++.||++|++.+. ++ ++ . ..|++||.+++|+|..|...| ++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~--~~-~--~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD--GE-R--VELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET--TE-E--EEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec--cE-E--eEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999998889999999999998 44 22 2 369999999999999998666 77888888764
No 17
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.73 E-value=4.6e-08 Score=71.96 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=52.2
Q ss_pred cceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 7 VHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 7 ~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
+..-..+| |...+++.||++|+ +.+.+ ++ + ...+++||.+++|+|..|.+.|.++++++++.++
T Consensus 7 pG~~~~~h~H~~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 7 PGGSIPPHRHPGEDEFFYVLSGE-GTLTV---DG------E-RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp TTEEEEEEEESSEEEEEEEEESE-EEEEE---TT------E-EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCCCCCEECCCCCEEEEEEECC-EEEEE---cc------E-EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 34445556 44445999999999 99884 43 3 5889999999999999999999999999998875
No 18
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.65 E-value=1.5e-07 Score=83.52 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=52.3
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET 83 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~ 83 (325)
+.+|++||++|+ |.+-+-+.++ .-....+++||+++||+|..|.+.|+|+++++++++...
T Consensus 96 ~~~EiyyvlsG~-g~~~l~~~~G-----~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~ 156 (191)
T PRK04190 96 DRAEIYYGLKGK-GLMLLQDPEG-----EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPA 156 (191)
T ss_pred CCCEEEEEEeCE-EEEEEecCCC-----cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcC
Confidence 346999999999 9999865543 334689999999999999999999999999999999853
No 19
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.63 E-value=6.7e-07 Score=83.03 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=131.8
Q ss_pred ccccC-CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545 12 CLTEN-DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG 90 (325)
Q Consensus 12 ~p~h~-~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~ 90 (325)
.|.|. +.+.+.+|++|+ |..++|+.+ + -.+++||.+..|++.-|---|.|++++..+-.+|..-.+
T Consensus 105 ApsHrHsqsAlRFvveG~-Ga~T~VdGe------r---~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDiplv~--- 171 (351)
T COG3435 105 APSHRHNQSALRFVVEGK-GAYTVVDGE------R---TPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPLVN--- 171 (351)
T ss_pred CCcccccccceEEEEecc-ceeEeecCc------e---eeccCCCEEEccCceeccCCCCCCCceEEEcccchHHHH---
Confidence 34443 568999999999 999999543 2 459999999999999999999999999998777642111
Q ss_pred cceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCC----CCc-eeeeecC-
Q 020545 91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGN----ANL-MVNNFAN- 164 (325)
Q Consensus 91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~----~~~-~~~nl~~- 164 (325)
++-+ ..|.-.+++...-.-...... .+ . ......+..... .-.+|-.+ +.+ -.-.|..
T Consensus 172 ----~l~~---gFfe~~~e~~q~v~~~~~d~~-ar----~-~~~~rP~~~r~~---~~~SPlf~Y~w~~t~eAL~~la~~ 235 (351)
T COG3435 172 ----SLGA---GFFEEHPEEQQPVTRPEGDSL-AR----Y-GPGMRPLRHRWG---KPYSPLFNYAWDRTREALERLARL 235 (351)
T ss_pred ----hhcc---cccccCchhcCcccCCCCCch-hh----c-CCCccccccCCC---CCCCcccccccccHHHHHHHHHhc
Confidence 1111 333334444333222211111 11 0 001111111000 00112110 000 0001111
Q ss_pred CCCCeeccCCeEEEEEcCCC--CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEe
Q 020545 165 FPADFCVKKAGMVTSFTGSN--FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEV 242 (325)
Q Consensus 165 ~~p~~~~~~gG~~~~~~~~~--~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l 242 (325)
.+||-. +|-.++.+++.+ .+. . -|++..-.|.||-.--+|=|.++ .|--|.+|+|++.|= | ++| +.
T Consensus 236 e~~dp~--dG~~~ryvNP~TGg~~m-p--tI~a~mqlL~~Gf~~~~~r~t~s-~iy~V~eGsg~~~Ig---~-~rf--~~ 303 (351)
T COG3435 236 EEPDPF--DGYKMRYVNPVTGGYAM-P--TIGAFMQLLPPGFHGKAHRHTDS-TIYHVVEGSGYTIIG---G-ERF--DW 303 (351)
T ss_pred cCCCCC--CcceEEEecCCCCCCcC-c--hHHHHHHhcCCcccCCceeccCC-EEEEEEecceeEEEC---C-EEe--ec
Confidence 124433 566777777654 222 2 25666667888988899998766 677789999998762 2 456 48
Q ss_pred cCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545 243 EAGQLLVVPRCFVVAIIAGPEGIECFSIT 271 (325)
Q Consensus 243 ~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~ 271 (325)
++||+|+||.=+.|-..||.+++.+|+|.
T Consensus 304 ~~~D~fvVPsW~~~~~~~gs~da~LFsfs 332 (351)
T COG3435 304 SAGDIFVVPSWAWHEHVNGSEDAVLFSFS 332 (351)
T ss_pred cCCCEEEccCcceeecccCCcceEEEecC
Confidence 99999999999888888998888877764
No 20
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.61 E-value=5.3e-07 Score=74.79 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=63.8
Q ss_pred ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545 191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI 270 (325)
Q Consensus 191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~ 270 (325)
.++++.+.+|+||+-...|+|.. .|+.||++|++.+..++. + +. ..|++||.+++|++.+|...|. ++++++.+
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-g-~~--~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v 106 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-G-EV--HPIRPGTMYALDKHDRHYLRAG-EDMRLVCV 106 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-C-EE--EEeCCCeEEEECCCCcEEEEcC-CCEEEEEE
Confidence 46789999999999888899865 599999999999985532 2 23 3699999999999999998776 88888887
Q ss_pred eCC
Q 020545 271 TTS 273 (325)
Q Consensus 271 ~~s 273 (325)
++-
T Consensus 107 ~tP 109 (125)
T PRK13290 107 FNP 109 (125)
T ss_pred ECC
Confidence 763
No 21
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=9.9e-07 Score=73.25 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=67.4
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~ 270 (325)
..+++++.+.||+-..+|.|.+.+|+.||++|+|.+.+= + +.+ .|++||.++||+|.+|...| |..++.++.+
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~-~~~--~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---G-EEV--EVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---C-EEE--EecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 568999999999999999999999999999999999875 2 233 59999999999999999777 7888999988
Q ss_pred eCCCC
Q 020545 271 TTSTR 275 (325)
Q Consensus 271 ~~s~~ 275 (325)
.....
T Consensus 109 ~~p~~ 113 (127)
T COG0662 109 QSPPY 113 (127)
T ss_pred ecCCc
Confidence 76544
No 22
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.53 E-value=8.3e-07 Score=73.76 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=63.8
Q ss_pred ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEE
Q 020545 189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIEC 267 (325)
Q Consensus 189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~ 267 (325)
..-.+.+..+.+.||+....|.||-..+.+||++|++++++= |+ . ..+++||++++|+|..|+..| +++....
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~-~--~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~ 112 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE-K--KELKAGDVIIIPPGVVHGLKAVEDEPMVL 112 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC-c--eEecCCCEEEECCCCeeeeccCCCCceeE
Confidence 345678999999999999999999788999999999999987 22 2 259999999999999999876 4444455
Q ss_pred EEEeCC
Q 020545 268 FSITTS 273 (325)
Q Consensus 268 ~~~~~s 273 (325)
+.+...
T Consensus 113 l~v~~~ 118 (131)
T COG1917 113 LLVFPL 118 (131)
T ss_pred EEEeee
Confidence 555443
No 23
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.48 E-value=6.2e-07 Score=75.93 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=52.0
Q ss_pred ccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCC--CeEEEEecCCCCEEEEEEeecC
Q 020545 12 CLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLG--SASWWYNNGSSDVVIVFVGETS 84 (325)
Q Consensus 12 ~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G--~~~~~~N~g~~~l~~~~~~~~~ 84 (325)
++| |..-+|++||++|+ +.+-+ ++ . ...|++||.+-||+| .+|.+.|.++..++.+|+.+..
T Consensus 57 ~~H~Hs~edEfv~ILeGE-~~l~~---d~-----~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~ 121 (161)
T COG3837 57 LRHWHSAEDEFVYILEGE-GTLRE---DG-----G--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTRE 121 (161)
T ss_pred cccccccCceEEEEEcCc-eEEEE---CC-----e--eEEecCCceeeccCCCcceeEEeecCCceEEEEEecccc
Confidence 356 44458999999999 87766 53 3 478999999999999 9999999999999999998654
No 24
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.44 E-value=8.6e-07 Score=82.50 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=50.4
Q ss_pred ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545 14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET 83 (325)
Q Consensus 14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~ 83 (325)
||+.-.+..||++|+ |++.+ ++ + ...|++||++++|+|.+||++|+|+++++++.--|.
T Consensus 196 ~~H~~eh~~yiL~G~-G~~~~---~g------~-~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~ 254 (260)
T TIGR03214 196 ETHVMEHGLYVLEGK-GVYNL---DN------N-WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKDM 254 (260)
T ss_pred ccccceeEEEEEece-EEEEE---CC------E-EEEecCCCEEEECCCCCEEEEecCCCcEEEEEEccc
Confidence 455567889999999 99877 53 3 588999999999999999999999999999866544
No 25
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.41 E-value=8.8e-07 Score=73.61 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=50.6
Q ss_pred eeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 10 IVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 10 ~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
.+-.|.++ ..+..||++|+ +++.+ ++ + .+.+++||++++|+|..||+.|.+++....+++..
T Consensus 55 ~~~~H~hp~~~~~~~Vl~G~-~~~~~---~g------~-~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~ 117 (131)
T COG1917 55 VIPWHTHPLGEQTIYVLEGE-GTVQL---EG------E-KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFP 117 (131)
T ss_pred ccccccCCCcceEEEEEecE-EEEEe---cC------C-ceEecCCCEEEECCCCeeeeccCCCCceeEEEEee
Confidence 34455444 67999999999 99998 32 2 47899999999999999999999998777777764
No 26
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.39 E-value=1.4e-06 Score=72.30 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
...|++||++|+ +.+..+ ++ .+ +..|++||.+++|++.+|++.|. ++++++|++.
T Consensus 54 ~~~E~~yVL~G~-~~~~~i--~~-----g~-~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~t 108 (125)
T PRK13290 54 NHLEAVYCIEGE-GEVEDL--AT-----GE-VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFN 108 (125)
T ss_pred CCEEEEEEEeCE-EEEEEc--CC-----CE-EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEEC
Confidence 346999999999 888833 21 13 58899999999999999999997 7999999984
No 27
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.33 E-value=8.9e-06 Score=69.65 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545 174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC 253 (325)
Q Consensus 174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G 253 (325)
.|+.+.++.. -+..+.++++.||..+..|+|..-+|.-+|++|+|.+++ ++ +.+ .+++||.++||+|
T Consensus 51 WG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~-~~~--~~~~g~sv~Ip~g 117 (151)
T PF01050_consen 51 WGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD-EEF--TLKEGDSVYIPRG 117 (151)
T ss_pred CcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-EEE--EEcCCCEEEECCC
Confidence 5888888743 245689999999999999999999999999999999996 23 333 5999999999999
Q ss_pred cEEEEEc-CCCCEEEEEEeC
Q 020545 254 FVVAIIA-GPEGIECFSITT 272 (325)
Q Consensus 254 ~~h~~~~-g~~~~~~~~~~~ 272 (325)
..|...| |+.+++++.+-.
T Consensus 118 ~~H~i~n~g~~~L~~IEVq~ 137 (151)
T PF01050_consen 118 AKHRIENPGKTPLEIIEVQT 137 (151)
T ss_pred CEEEEECCCCcCcEEEEEec
Confidence 9999877 788899998743
No 28
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.27 E-value=5.3e-06 Score=70.36 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=64.8
Q ss_pred cccccccceEEEEEecCCC-ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc--cEEEEEc-C
Q 020545 186 PFLEQVGLSCTILKLDANA-MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC--FVVAIIA-G 261 (325)
Q Consensus 186 p~L~~~gis~~~v~l~pg~-~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G--~~h~~~~-g 261 (325)
-.|+ .+++....++||+ -..+|||..-.|++||++|++.+-+= ++ . ..|++||++-+|+| .+|+.+| +
T Consensus 37 ~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d--~~-e---~~lrpGD~~gFpAG~~~aHhliN~s 108 (161)
T COG3837 37 LGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED--GG-E---TRLRPGDSAGFPAGVGNAHHLINRS 108 (161)
T ss_pred cChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEEC--Ce-e---EEecCCceeeccCCCcceeEEeecC
Confidence 3566 4678888999998 56789999999999999999876532 22 2 35999999999999 6787655 7
Q ss_pred CCCEEEEEEeCCCC
Q 020545 262 PEGIECFSITTSTR 275 (325)
Q Consensus 262 ~~~~~~~~~~~s~~ 275 (325)
+..++++.+-+...
T Consensus 109 ~~~~~yL~vG~r~~ 122 (161)
T COG3837 109 DVILRYLEVGTREP 122 (161)
T ss_pred CceEEEEEeccccc
Confidence 78899998876543
No 29
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.25 E-value=2.5e-06 Score=70.62 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=54.0
Q ss_pred CeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545 208 PTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT 272 (325)
Q Consensus 208 Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~ 272 (325)
=|||++|+|+.-|.+|++.+++=.++|+.+ .+.+||+++||+|..|..+...-++..++.+.
T Consensus 58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~el---~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp 119 (163)
T COG4297 58 HHYHSGAHEVLGVLRGQAGLQIGGADGQEL---EVGEGDVLLIPAGVGHCRLHSSADFQVVGAYP 119 (163)
T ss_pred ccccCCcceEEEEecceeEEEecCCCCcee---eecCCCEEEEecCcccccccCCCCeEEEcccC
Confidence 389999999999999999999999998654 59999999999999999776667777776653
No 30
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.23 E-value=9e-06 Score=69.79 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=57.8
Q ss_pred eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
++.=|++..+|+.|++.|+ |++.+..+++ +++.-.+.+||++.||+|+-||+-=+-+-.++.+-+|.
T Consensus 87 F~~EH~H~d~EvRy~vaG~-GiF~v~~~d~-----~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~ 153 (181)
T COG1791 87 FLQEHLHTDDEVRYFVAGE-GIFDVHSPDG-----KVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT 153 (181)
T ss_pred HHHHhccCCceEEEEEecc-eEEEEECCCC-----cEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee
Confidence 3445777889999999999 9999999986 77777899999999999999999666666788888885
No 31
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.23 E-value=5.9e-06 Score=71.12 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEE-EEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIV-LGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~-~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
++-.|.+..+|+.||++|+ |+..+...++ .++ -.+++||+++||+|+.||+.=+.+..++++-+|.
T Consensus 84 f~~EH~H~deEvR~i~~G~-g~Fdvr~~~~------~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHEDEEVRYIVDGS-GYFDVRDGDD------VWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEESS-EEEEEEECE-EEEEEE-TTC------EEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEecChheEEEEeCcE-EEEEEEcCCC------EEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 4567777789999999999 9999997764 444 6899999999999999999765555788888884
No 32
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.21 E-value=5.6e-06 Score=72.97 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
+|+...|+.||++|+ ..+.+ ++ + .+.|++||.++||++.+|.+.|.++++++++++.
T Consensus 124 ~~h~~~E~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 124 IKHQGEEIGTVLEGE-IVLTI---NG------Q-DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred cccCCcEEEEEEEeE-EEEEE---CC------E-EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEe
Confidence 355678999999999 88877 42 3 5889999999999999999999999999999876
No 33
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=1.2e-05 Score=64.98 Aligned_cols=83 Identities=14% Similarity=0.267 Sum_probs=67.6
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~ 270 (325)
+|-+..++|.||+-.--|-|-+-...+||+.|++++-.=+ +.-+...+++||.|+||+|.+|-..| +++.+.++..
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~---rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN---RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc---ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 6778899999999999999999999999999999876532 22345678999999999999999544 7888887776
Q ss_pred eCCCCCc
Q 020545 271 TTSTRPA 277 (325)
Q Consensus 271 ~~s~~p~ 277 (325)
.+..|+.
T Consensus 122 RsDp~~~ 128 (142)
T COG4101 122 RSDPNPQ 128 (142)
T ss_pred ccCCCCC
Confidence 6655554
No 34
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.19 E-value=7.7e-06 Score=82.30 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=51.4
Q ss_pred cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
|.|+...|..||++|+ +.+.+ ++ + ++.|++||.++||+|.+|++.|.|+++++++++..
T Consensus 401 ~~H~~~~E~~~VlsG~-~~v~i---dg------~-~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~ 459 (478)
T PRK15460 401 QMHHHRAEHWVVVAGT-AKVTI---DG------D-IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRS 459 (478)
T ss_pred CCCCCCceEEEEEeeE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 3344556999999999 99998 53 3 58999999999999999999999999999999973
No 35
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.18 E-value=1.3e-05 Score=70.59 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
.+.+|+++|++|+ |.+=+=+.++.+ -..-....+++||+++||+|.+|-..|+|+++|++.++..
T Consensus 81 ~~~pEvY~vl~G~-g~~lLq~~~~~~-~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~ 145 (182)
T PF06560_consen 81 LSYPEVYEVLSGE-GLILLQKEEGDD-VGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVP 145 (182)
T ss_dssp TT--EEEEEEESS-EEEEEE-TTS------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEE
T ss_pred CCCCcEEEEEeCE-EEEEEEecCCCc-ceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEe
Confidence 4578999999999 999997655200 0023456899999999999999999999999999998885
No 36
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.14 E-value=1.3e-05 Score=80.76 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=50.7
Q ss_pred ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
.|+..+|..||++|+ +.+.+ ++ + +..|++||.++||+|.+|.+.|.|+++++++++..
T Consensus 393 ~H~~~~E~~~Vl~G~-~~v~~---dg------~-~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~ 450 (468)
T TIGR01479 393 MHHHRAEHWIVVSGT-ARVTI---GD------E-TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQS 450 (468)
T ss_pred ccCCCceEEEEEeeE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 355667888999999 99987 53 3 58999999999999999999999999999999973
No 37
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.13 E-value=3.2e-05 Score=68.00 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=52.0
Q ss_pred cccccceEEEEEecCCC------ccCCeecCC------CCEEEEEEeCcEEEEEEeCCCc---eEEeEEecCccEEEECC
Q 020545 188 LEQVGLSCTILKLDANA------MLSPTYTAD------SVQVFYVVKGSGKAQIVGLNAK---LVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 188 L~~~gis~~~v~l~pg~------~~~Ph~h~~------A~ei~yV~~G~~~~~vv~p~g~---~~~~~~l~~Gdv~vvP~ 252 (325)
|+.-+|......|.||- |.--|||+. .+|+-+|++|+|.+-+-.+++. +.+--++++||+++||.
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 33344455555555543 455699998 8999999999999999998872 34445799999999999
Q ss_pred ccEEEEEc-CCCCEEEEEEeCC
Q 020545 253 CFVVAIIA-GPEGIECFSITTS 273 (325)
Q Consensus 253 G~~h~~~~-g~~~~~~~~~~~s 273 (325)
+++|..+| |++.+.+.....+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 99998555 8888887776654
No 38
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.12 E-value=1.7e-05 Score=79.85 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=64.4
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~ 270 (325)
++.+..+++.||+-..+|+|+...|..||++|++.+.+= | +.+ .|++||.+++|+|.+|...| |+++++++.+
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g-~~~--~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---D-ETL--LLTENESTYIPLGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---C-EEE--EecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 578899999999988999999999999999999999742 3 233 69999999999999998766 8889998887
Q ss_pred eC
Q 020545 271 TT 272 (325)
Q Consensus 271 ~~ 272 (325)
.+
T Consensus 449 ~~ 450 (468)
T TIGR01479 449 QS 450 (468)
T ss_pred Ec
Confidence 65
No 39
>PRK11171 hypothetical protein; Provisional
Probab=98.10 E-value=1.3e-05 Score=74.86 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=51.8
Q ss_pred ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545 14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS 84 (325)
Q Consensus 14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~ 84 (325)
||+...|.+||++|+ |.+.+ ++ + .+.|++||++.+|++.+||+.|.|+++++++..-|.+
T Consensus 201 ~~~~~ee~i~Vl~G~-~~~~~---~~------~-~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~n 260 (266)
T PRK11171 201 ETHVMEHGLYVLEGK-GVYRL---NN------D-WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVN 260 (266)
T ss_pred cCCCceEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcccc
Confidence 456678999999999 99987 53 3 5899999999999999999999999999999876543
No 40
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.01 E-value=6e-05 Score=66.38 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=57.5
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~ 270 (325)
.+.+...++.||+-..+++|....|+.||++|++.+.+= + +.+ .|++||.+++|.+.+|...| +++.++++.+
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~---~-~~~--~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTIN---G-QDY--HLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEEC---C-EEE--EecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 356677789999965544444569999999999998762 3 333 59999999999999997666 7778887766
Q ss_pred eC
Q 020545 271 TT 272 (325)
Q Consensus 271 ~~ 272 (325)
.+
T Consensus 180 ~~ 181 (185)
T PRK09943 180 HT 181 (185)
T ss_pred eC
Confidence 53
No 41
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.00 E-value=5.7e-05 Score=65.06 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=51.4
Q ss_pred ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCC-CEEEEEEeCCC
Q 020545 205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTST 274 (325)
Q Consensus 205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~-~~~~~~~~~s~ 274 (325)
+...|.|.+ .|+-|+++|+|...+...++. -++-.+++||+++||+|..||...+.. .+.++-+|+.+
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~-wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~ 152 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDV-WIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDE 152 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-TTCE-EEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSC
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcCCCE-EEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCC
Confidence 778999975 799999999999999988764 344568999999999999999877765 48898888653
No 42
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.99 E-value=4.1e-05 Score=77.12 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=64.1
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~ 270 (325)
++.+.++++.||+-...|+|....|..||++|++.+++=+ +. ..|++||.++||+|.+|...| |+++++++.+
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg----~~--~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG----DI--KLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC----EE--EEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 5688999999999888899988889999999999988743 23 369999999999999998766 8889998877
Q ss_pred eC
Q 020545 271 TT 272 (325)
Q Consensus 271 ~~ 272 (325)
.+
T Consensus 458 ~~ 459 (478)
T PRK15460 458 RS 459 (478)
T ss_pred Ec
Confidence 54
No 43
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.89 E-value=8.8e-05 Score=63.52 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=49.9
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
|...+|.-+|++|+ |.+.+ ++ + .+.+++||.++||+|..|-+.|.|+.+|+++-+-
T Consensus 81 H~~R~E~W~Vv~G~-a~v~~---~~------~-~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 81 HHHRSEHWTVVSGT-AEVTL---DD------E-EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred ecccccEEEEEeCe-EEEEE---CC------E-EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 66678999999999 99998 53 3 5889999999999999999999999999999874
No 44
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.82 E-value=5.9e-05 Score=64.78 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=41.4
Q ss_pred CeecCC-CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 208 PTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 208 Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
.+||.+ +.|+.|+++|+..+.+.+.+..+. -.|++||+++||+|.+|.-.+
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~--v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKRED--VPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcCCcEEE--EEECCCCEEEeCCCCCccccc
Confidence 346664 899999999999999888643233 469999999999999998554
No 45
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=8.3e-05 Score=60.28 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=46.8
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
|-......||++|+ ..+-+ ++ --+..-.+++||.|+||+|++|-=+|..++++..+...
T Consensus 64 H~~hEtaIYvlsG~-ah~w~---G~----rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 64 HEEHETAIYVLSGE-AHTWY---GN----RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred cccccEEEEEEece-eeeee---cc----ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 44567889999999 88877 32 12334589999999999999999999999988766554
No 46
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.79 E-value=0.0001 Score=56.91 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=41.7
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
+..-+.||++|. ..+++ + +..+.+.+||.|.||+|-...+.|.++++++++++
T Consensus 32 ~~~~vF~V~~G~-v~Vti---~-------~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 32 DNTMVFYVIKGK-VEVTI---H-------ETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp SEEEEEEEEESE-EEEEE---T-------TEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CcEEEEEEEeCE-EEEEE---c-------CcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 467899999999 99999 3 33688999999999999999999999999988753
No 47
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.77 E-value=7e-05 Score=65.33 Aligned_cols=58 Identities=5% Similarity=-0.027 Sum_probs=45.7
Q ss_pred ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
|.+..+|++|+++|+ ..+.+++.+ +.....|++||+|++|+|++|..+.. ++.+.+.+
T Consensus 50 H~~~tdE~FyqleG~-~~l~v~d~g------~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 50 HYDPGEEFFYQLEGD-MYLKVQEDG------KRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred ccCCCceEEEEECCe-EEEEEEcCC------ceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 444689999999999 999999854 33468999999999999999988773 34444444
No 48
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.76 E-value=0.00012 Score=59.35 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=45.3
Q ss_pred ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
+.-+.||+++--++.||++|+ |.+.+ ++ + .+.+++||++.+|+|.+|.+.-.+++++..+.+.
T Consensus 13 ~~~~~~h~h~~~~i~~v~~G~-~~~~~---~~------~-~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 13 NFEFPPHWHDFYEIIYVLSGE-GTLHI---DG------Q-EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp T-SEEEETT-SEEEEEEEEE--EEEEE---TT------E-EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCccCCEECCCEEEEEEeCCE-EEEEE---CC------E-EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 345678888999999999999 99977 53 3 5899999999999999999999887777666554
No 49
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.74 E-value=9.1e-05 Score=63.63 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=42.3
Q ss_pred ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545 14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG 71 (325)
Q Consensus 14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g 71 (325)
|.++.+|++|+++|+ ..+.+.+.+ +.+...|++||++++|+|++|-....+
T Consensus 44 H~~~tdE~FyqleG~-~~l~v~d~g------~~~~v~L~eGd~flvP~gvpHsP~r~~ 94 (159)
T TIGR03037 44 HDDPGEEFFYQLKGE-MYLKVTEEG------KREDVPIREGDIFLLPPHVPHSPQRPA 94 (159)
T ss_pred ccCCCceEEEEEcce-EEEEEEcCC------cEEEEEECCCCEEEeCCCCCcccccCC
Confidence 333589999999999 999988755 334689999999999999999887753
No 50
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.73 E-value=0.00011 Score=64.00 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=45.2
Q ss_pred cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
.||.=..-|+|+ +.|+.|+++|+.++.+.+.+..+ +-.|++||++++|+|.+|.-.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~--~v~L~eGd~fllP~gvpHsP~r 98 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQEDGKRR--DVPIREGEMFLLPPHVPHSPQR 98 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcCCcee--eEEECCCCEEEeCCCCCcCCcc
Confidence 455555558865 79999999999999999954213 3469999999999999998544
No 51
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.66 E-value=0.00042 Score=62.80 Aligned_cols=68 Identities=10% Similarity=0.259 Sum_probs=52.4
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE-EEEEcCCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV-VAIIAGPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~-h~~~~g~~~~~~~~~ 270 (325)
.|++....++...+ .||.+-.|+.||++|+.++.+ +|+ .+ .+++||+++||+|.. ||.. ...+.++.+
T Consensus 156 ~m~aGf~~~~~~sf---~wtl~~dEi~YVLEGe~~l~I---dG~-t~--~l~pGDvlfIPkGs~~hf~t--p~~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWENAFF---PWTLNYDEIDMVLEGELHVRH---EGE-TM--IAKAGDVMFIPKGSSIEFGT--PSSVRFLYV 224 (233)
T ss_pred ceeeEEEEEecCcc---ceeccceEEEEEEEeEEEEEE---CCE-EE--EeCCCcEEEECCCCeEEecC--CCCeeEEEE
Confidence 46888889998665 499999999999999999998 343 33 599999999999999 5522 224554443
No 52
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.57 E-value=0.00031 Score=63.64 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=44.7
Q ss_pred ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
.|+|.+.+|+.||++|+ ..+.+ ++ + .+.+++||+++||+|..|.+.+.+ ..+++++.
T Consensus 169 f~wtl~~dEi~YVLEGe-~~l~I---dG------~-t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 169 FPWTLNYDEIDMVLEGE-LHVRH---EG------E-TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred cceeccceEEEEEEEeE-EEEEE---CC------E-EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 46888999999999999 88888 43 3 589999999999999994444433 56666655
No 53
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.56 E-value=0.0005 Score=53.14 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=52.7
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECF 268 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~ 268 (325)
.++...+.|.|++.-.|.-.-+.+-+.||++|...+++-.. .+ .+.+||+|.||+|-.+.+.| +++.+.++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~----~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET----SF--VVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE----EE--EEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc----EE--EEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 46899999999999999887788899999999999998542 34 48999999999999988666 77776644
No 54
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.53 E-value=0.00064 Score=58.58 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=57.0
Q ss_pred ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC-CCEEEEEEeCCCC
Q 020545 205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP-EGIECFSITTSTR 275 (325)
Q Consensus 205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~-~~~~~~~~~~s~~ 275 (325)
+..=|.|. ..|+-|++.|+|...+..++|. ++.-.+.+||.+.||.|.-||.--+. ..++++.+|+...
T Consensus 87 F~~EH~H~-d~EvRy~vaG~GiF~v~~~d~~-~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 87 FLQEHLHT-DDEVRYFVAGEGIFDVHSPDGK-VYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred HHHHhccC-CceEEEEEecceEEEEECCCCc-EEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 44457874 8899999999999999999974 56667899999999999999976554 4589998887654
No 55
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.41 E-value=0.0016 Score=53.43 Aligned_cols=79 Identities=13% Similarity=0.238 Sum_probs=68.8
Q ss_pred ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545 189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF 268 (325)
Q Consensus 189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~ 268 (325)
..+|.|+-...|.+|.-...|| .|--|-+||++|+|++.-+..+ .+ +++++|.++++-+.-.|+..+.. +++.+
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Y-knHlEAvyci~G~Gev~~~~~G--~~--~~i~pGt~YaLd~hD~H~lra~~-dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHY-KNHLEAVYCIEGEGEVEDLDTG--EV--HPIKPGTMYALDKHDRHYLRAKT-DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEe-cCceEEEEEEeceEEEEEccCC--cE--EEcCCCeEEecCCCccEEEEecC-CEEEE
Confidence 4579999999999999999999 8999999999999999998753 23 36999999999999999988877 88888
Q ss_pred EEeCC
Q 020545 269 SITTS 273 (325)
Q Consensus 269 ~~~~s 273 (325)
.+|+-
T Consensus 105 CVFnP 109 (126)
T PF06339_consen 105 CVFNP 109 (126)
T ss_pred EEcCC
Confidence 88863
No 56
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.38 E-value=0.0048 Score=51.51 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCcccccccceEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCc-cEEEE
Q 020545 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAG-QLLVV 250 (325)
Q Consensus 173 ~gG~~~~~~~~~~p~L~~~gis~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~G-dv~vv 250 (325)
..|.+..+...+...+. . -.+..+.-.| |..+.-|+|...+++.+|++|+..+.+-+..+.+.+ .|..- +.+.|
T Consensus 14 ~RG~L~~~e~~~~ipf~-i-~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~--~L~~~~~~L~I 89 (131)
T PF05523_consen 14 ERGSLSVIERFDDIPFE-I-KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEF--ILDEPNKGLYI 89 (131)
T ss_dssp TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEE--EE--TTEEEEE
T ss_pred CCCcEEEEeccCCCCCC-c-cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEE--EECCCCeEEEE
Confidence 35999999876433332 2 2456664444 445999999999999999999999998876655444 45443 69999
Q ss_pred CCccEEEEEcCCCCEEEEEEeC
Q 020545 251 PRCFVVAIIAGPEGIECFSITT 272 (325)
Q Consensus 251 P~G~~h~~~~g~~~~~~~~~~~ 272 (325)
|+|++|...+-.++++++.+-+
T Consensus 90 ppg~w~~~~~~s~~svlLv~as 111 (131)
T PF05523_consen 90 PPGVWHGIKNFSEDSVLLVLAS 111 (131)
T ss_dssp -TT-EEEEE---TT-EEEEEES
T ss_pred CCchhhHhhccCCCcEEEEEcC
Confidence 9999999877666677666543
No 57
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.36 E-value=0.0014 Score=50.89 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=50.1
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF 268 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~ 268 (325)
|..+..+++.||+.+..|.|+ ..|.+||++|+.. +.++ ++.+||.+..|.|..|...+ ++++.++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~----d~~~------~~~~G~~~~~p~g~~h~~~s-~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELS----DGDG------RYGAGDWLRLPPGSSHTPRS-DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEE----ETTC------EEETTEEEEE-TTEEEEEEE-SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEE----ECCc------cCCCCeEEEeCCCCccccCc-CCCEEEE
Confidence 568899999999999999996 5677799999876 3332 36799999999999998764 6666544
No 58
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.21 E-value=0.0011 Score=49.66 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=41.0
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEE
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVV 256 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h 256 (325)
+++..-..+||.+. |+...+|++||++|+++++.- +|.+ .++++||++++|+|+..
T Consensus 7 ~~~g~w~~~pg~~~---~~~~~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~~~p~G~~~ 62 (74)
T PF05899_consen 7 FSAGVWECTPGKFP---WPYPEDEFFYVLEGEVTITDE--DGET---VTFKAGDAFFLPKGWTG 62 (74)
T ss_dssp EEEEEEEEECEEEE---EEESSEEEEEEEEEEEEEEET--TTEE---EEEETTEEEEE-TTEEE
T ss_pred EEEEEEEECCceeE---eeCCCCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEEEECCCCEE
Confidence 45666677887653 333559999999999888844 5543 36999999999999973
No 59
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.16 E-value=0.0014 Score=54.56 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=49.9
Q ss_pred cceeeccc--cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 7 VHIIVCLT--ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 7 ~~~~~~p~--h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
...++--| |+.++|+..|++|+ ..+.+=.+++ + ...+.+||+++||+|+-|.- +..+-++.++.-+
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgq-A~l~iGG~~G------~-el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY 118 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQ-AGLQIGGADG------Q-ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY 118 (163)
T ss_pred cccccccccccCCcceEEEEecce-eEEEecCCCC------c-eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence 34445445 56799999999999 9998866664 3 46799999999999999954 4444577777655
No 60
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.14 E-value=0.0032 Score=50.75 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=39.3
Q ss_pred CCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC-CCCEEEEE
Q 020545 202 ANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG-PEGIECFS 269 (325)
Q Consensus 202 pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g-~~~~~~~~ 269 (325)
++-...||||. -.++.||++|++.+.+ + + +.+ .+++||++++|+|.+|..... ++++..+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~-~--~-~~~--~l~~g~~~li~p~~~H~~~~~~~~~~~~~~ 73 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI-D--G-QEY--PLKPGDLFLIPPGQPHSYYPDSNEPWEYYW 73 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE-T--T-EEE--EE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE-C--C-EEE--EEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence 44566899985 8899999999999843 2 2 233 699999999999999986664 34655443
No 61
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.08 E-value=0.0036 Score=60.30 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=61.6
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~ 270 (325)
.|.+..-.|.||....||=|. +..+-||++|+|..++|+. + .+ .+++||+|++|.+..|--.| +++.+.|+.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g--~-~~--~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDG--E-RT--TMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECC--E-EE--eeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 567788889999999999985 7799999999997777754 3 34 59999999999999997555 6777888766
Q ss_pred eC
Q 020545 271 TT 272 (325)
Q Consensus 271 ~~ 272 (325)
.+
T Consensus 154 lD 155 (335)
T TIGR02272 154 LD 155 (335)
T ss_pred CC
Confidence 54
No 62
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.05 E-value=0.0036 Score=52.88 Aligned_cols=68 Identities=9% Similarity=0.197 Sum_probs=40.5
Q ss_pred cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEee
Q 020545 13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGE 82 (325)
Q Consensus 13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~ 82 (325)
+|-+.-.|+++|++|+ |..-+-.... +-..+-..+.+-+++.|.||.+.+|-+.|++. +++.++.+.+
T Consensus 59 iHRHsCEEVFvVLkG~-GTl~l~~~~~-~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiS 127 (167)
T PF02041_consen 59 IHRHSCEEVFVVLKGS-GTLYLASSHE-KYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIIS 127 (167)
T ss_dssp EEEESS-EEEEEEE---EEEEE--SSS-SS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEE
T ss_pred CccccccEEEEEEecc-eEEEEecccc-cCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEec
Confidence 3434568999999999 9999875431 11123446899999999999999999999995 7998887764
No 63
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=97.01 E-value=0.019 Score=56.73 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=108.7
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCcce
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFS 93 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~ 93 (325)
+.|.++++++.+|+ +.+..-. . ...+++||+++||+|+.+.+. ..+.+.+.+.+-..+ ....|..
T Consensus 151 NaDGD~Livpq~G~-l~i~TEf--------G--~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi~E~~g~~f~LPdl-- 216 (438)
T PRK05341 151 NADGELLIVPQQGR-LRLATEL--------G--VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYVCENYGAPFRLPDL-- 216 (438)
T ss_pred cCCCCEEEEEEeCC-EEEEEec--------c--ceEecCCCEEEEcCccEEEEe-cCCCCeeEEEEEecCCcccCCCC--
Confidence 34789999999999 8877632 1 357999999999999998774 434455554432111 2233432
Q ss_pred eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545 94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA 163 (325)
Q Consensus 94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~ 163 (325)
=..|.+.++. .+-|..+...++.. ..+-..++|... .+. .. +|. +.--+++|||.
T Consensus 217 --GpiG~nglan-------pRDF~~P~a~~ed~--~~~~~vv~K~~G----~l~~~~~~hsPfDVVaWhGn~~Pykydl~ 281 (438)
T PRK05341 217 --GPIGANGLAN-------PRDFLTPVAAFEDR--EGPFELVAKFGG----RLWRAEIDHSPLDVVAWHGNYAPYKYDLR 281 (438)
T ss_pred --CcccccCCCC-------hhHcCCCcchhccc--CCCEEEEEEeCC----eeEEEecCCCCceEeeecCcccceEeehh
Confidence 0122333322 23344443333321 111234455444 221 11 221 12347888887
Q ss_pred CCCCCe--e--ccCCeEEEEEcC-CCCcccccccceE--EEEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCCCc
Q 020545 164 NFPADF--C--VKKAGMVTSFTG-SNFPFLEQVGLSC--TILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAK 235 (325)
Q Consensus 164 ~~~p~~--~--~~~gG~~~~~~~-~~~p~L~~~gis~--~~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~ 235 (325)
+-.|.- + -.+---.+++++ .+-|.....+.-+ =|-...+++++.|-||.| .+|+++.+.|.-...
T Consensus 282 ~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak------- 354 (438)
T PRK05341 282 RFNTIGSISFDHPDPSIFTVLTSPSDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAK------- 354 (438)
T ss_pred heeeccccccccCCCCceEEEeccCCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhcccccccc-------
Confidence 644431 0 011111222222 2344444333211 112237899999999999 669998888864322
Q ss_pred eEEeEEecCccEEEECCccEE
Q 020545 236 LVLDSEVEAGQLLVVPRCFVV 256 (325)
Q Consensus 236 ~~~~~~l~~Gdv~vvP~G~~h 256 (325)
+..+.+|.+-.=|.|.+|
T Consensus 355 ---~~gf~pGg~SLH~~~~pH 372 (438)
T PRK05341 355 ---AEGFVPGGASLHNCMSPH 372 (438)
T ss_pred ---ccCcCCCeeeecCCCCCC
Confidence 012678888888888886
No 64
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.98 E-value=0.0019 Score=61.46 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=47.3
Q ss_pred cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545 5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
-|.+..+.+|+++..|++||++|+ |...+ ++ + ...+++||+++||+|..|.+....+
T Consensus 55 ~~~~~~~~~H~H~~~el~~v~~G~-g~~~v---~~------~-~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 55 RYPQDVFAEHTHDFCELVIVWRGN-GLHVL---ND------R-PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCCccccceEEEEEEEcCe-EEEEE---CC------E-EEeecCCeEEEECCCCeecccccCC
Confidence 455566778888999999999999 99777 53 3 5899999999999999999876554
No 65
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.97 E-value=0.0029 Score=57.27 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=58.4
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC-CCCEEEEEEe
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG-PEGIECFSIT 271 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g-~~~~~~~~~~ 271 (325)
..+..+++.||+-+..|.| ...|+.+|++|.- .+..+ .+.+||++..|.|..|.-.+. ++++.++++.
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~g------~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDETG------VYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred cEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCCC------ccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 4688999999999999999 5779999999993 24332 478999999999999987774 5679999887
Q ss_pred CCC
Q 020545 272 TST 274 (325)
Q Consensus 272 ~s~ 274 (325)
+..
T Consensus 196 dap 198 (215)
T TIGR02451 196 DAP 198 (215)
T ss_pred cCC
Confidence 543
No 66
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=96.94 E-value=0.016 Score=49.11 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred CceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc
Q 020545 156 NLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK 235 (325)
Q Consensus 156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~ 235 (325)
.+.+.|+...+-+-+...|=+-..+...-.-.++. +.+-+-++.||.-..+|=|. ..|+.+|++|+|...+....++
T Consensus 9 ~~~Vr~iselpq~~ygr~GLsH~TvAGa~~hGmke--vEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~ 85 (167)
T PF02041_consen 9 LPLVRNISELPQDNYGRPGLSHITVAGALLHGMKE--VEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEK 85 (167)
T ss_dssp --SEEEGGGS--B-TT-TTEEEEEEE-HHHH--SS--EEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSS
T ss_pred CceeEEhhhCccccccCCCcceEEeehhhhcCcee--eeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEeccccc
Confidence 35677887765554433331223333333345664 58899999999999999996 7799999999999999876421
Q ss_pred ---eEEeEEecCccEEEECCccEEEEEcCC--CCEEEEEEeCCCCCceeeec
Q 020545 236 ---LVLDSEVEAGQLLVVPRCFVVAIIAGP--EGIECFSITTSTRPALGKLG 282 (325)
Q Consensus 236 ---~~~~~~l~~Gdv~vvP~G~~h~~~~g~--~~~~~~~~~~s~~p~~~~la 282 (325)
..-...+-+++.|.||.+.+|-..|++ +++..+.+.+ .-|...|+.
T Consensus 86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiS-rpPvkvf~y 136 (167)
T PF02041_consen 86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIIS-RPPVKVFIY 136 (167)
T ss_dssp S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEE-SSS--EEEE
T ss_pred CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEec-CCCeEEEEe
Confidence 223346889999999999999876754 6788777653 345555554
No 67
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.85 E-value=0.0029 Score=47.45 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=32.2
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY 68 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~ 68 (325)
..+|++||++|+ ..+.. .+ .+ ..++++||++++|+|..--|.
T Consensus 24 ~~~E~~~vleG~-v~it~--~~------G~-~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 24 PEDEFFYVLEGE-VTITD--ED------GE-TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp SSEEEEEEEEEE-EEEEE--TT------TE-EEEEETTEEEEE-TTEEEEEE
T ss_pred CCCEEEEEEEeE-EEEEE--CC------CC-EEEEcCCcEEEECCCCEEEEE
Confidence 449999999999 66664 34 24 489999999999999976553
No 68
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.77 E-value=0.0032 Score=59.03 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=43.6
Q ss_pred eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545 11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
+.||+++--|+.||++|+ |.+.+ ++ + .+.+.+||+++||+|.+|++...++
T Consensus 31 ~~~H~H~~~ei~~i~~G~-~~~~i---~~------~-~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGN-GLHVL---ND------H-PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CccccccceeEEEEecCc-eEEEE---CC------e-eeeecCCeEEEEcCCCcccccccCC
Confidence 457888899999999999 99887 53 3 5899999999999999999876544
No 69
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.76 E-value=0.0057 Score=60.42 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCcce
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFS 93 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~ 93 (325)
+.|.++++++.+|+ +.+.- +. . ...+++||+++||+|+.+.+.=. ++++.+.+-..+ ....|.
T Consensus 143 NaDGD~Li~~q~G~-l~l~T---e~-----G--~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~~~~~~lPe--- 206 (424)
T PF04209_consen 143 NADGDELIFPQQGS-LRLET---EF-----G--RLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENFGSHFRLPE--- 206 (424)
T ss_dssp ESSEEEEEEEEES--EEEEE---TT-----E--EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEES--EE------
T ss_pred cCCCCEEEEEEECC-EEEEe---cC-----e--eEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcCCCeEEecC---
Confidence 55789999999999 88877 32 2 35799999999999999887555 566665543221 112231
Q ss_pred eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545 94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA 163 (325)
Q Consensus 94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~ 163 (325)
+=..|.++++. .+-|..+....+.- ..+-.+++|... .+. .. +|. +.--+++|||.
T Consensus 207 -~G~iG~ngla~-------~RDf~~P~a~~~d~--~~~~~v~~K~~G----~l~~~~~~hsPfDVVgW~Gn~~Pykynl~ 272 (424)
T PF04209_consen 207 -LGPIGANGLAN-------PRDFRTPVAAFEDD--EGEWEVVVKFRG----GLFSATYPHSPFDVVGWHGNYYPYKYNLR 272 (424)
T ss_dssp --GGGTTS-BS--------GGGEEEE---------EEEEEEEEEETT----EEEEEEEEE-S--EEEEEES---EEEEGG
T ss_pred -cCccccCCCCC-------hhhhcCCCcccccC--CCCEEEEEEECC----eeEEEEeCCCchheeeecCccccEEEehH
Confidence 11123333321 33344444222211 111234555444 221 11 231 12347899998
Q ss_pred CCCCCeeccCCeEEE-EEcCCCCccc----ccccceEE-EE------EecCCCccCCeecCC-CCEEEEEEeCcEEEEEE
Q 020545 164 NFPADFCVKKAGMVT-SFTGSNFPFL----EQVGLSCT-IL------KLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIV 230 (325)
Q Consensus 164 ~~~p~~~~~~gG~~~-~~~~~~~p~L----~~~gis~~-~v------~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv 230 (325)
+-.|..+. .. ..++.-+-.| ..-|.++. .+ ....+.++.|-||.| .+|.++.+.|.-.+.
T Consensus 273 ~F~pi~s~-----~~dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~-- 345 (424)
T PF04209_consen 273 DFEPINSV-----SYDHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLVAEHTFRPPYYHRNVMSEFMGLIRGNYDAS-- 345 (424)
T ss_dssp G-B----S-----SSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE--TTS--S---B--SSEEEEEEEE--------
T ss_pred Hhhhhcce-----ecccCCCceeEEEeccCCCCCceEEEEEeeCCcccccCCCccCCCCCcceeeeeeeeeccccccc--
Confidence 75554221 10 1222222122 22232322 22 234478999999999 567666667654322
Q ss_pred eCCCceEEeEEecCccEEEECCccEEE
Q 020545 231 GLNAKLVLDSEVEAGQLLVVPRCFVVA 257 (325)
Q Consensus 231 ~p~g~~~~~~~l~~Gdv~vvP~G~~h~ 257 (325)
...+.+|.+-.=|.|++|=
T Consensus 346 --------~~gf~pGg~SLH~~~~pHG 364 (424)
T PF04209_consen 346 --------RDGFEPGGISLHPCGTPHG 364 (424)
T ss_dssp -------------TT-EEEE-TT--B-
T ss_pred --------cCCcCCCceeccCCCCCCC
Confidence 1237789999999999985
No 70
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=96.73 E-value=0.0092 Score=49.08 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=56.4
Q ss_pred cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
+|+.+-.--|+.+.=|-+||++|+ |.+..+..+ + ++.+++|.++++-+--.|++.... +++++|+|.
T Consensus 42 i~aGtet~~~YknHlEAvyci~G~-Gev~~~~~G-------~-~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFn 108 (126)
T PF06339_consen 42 IYAGTETHIHYKNHLEAVYCIEGE-GEVEDLDTG-------E-VHPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFN 108 (126)
T ss_pred EeCCCeeEEEecCceEEEEEEece-EEEEEccCC-------c-EEEcCCCeEEecCCCccEEEEecC--CEEEEEEcC
Confidence 455555566777888999999999 999998644 3 689999999999999999998764 899999993
No 71
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.72 E-value=0.025 Score=55.79 Aligned_cols=202 Identities=11% Similarity=0.022 Sum_probs=105.8
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCcce
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFS 93 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~ 93 (325)
..|.++++++.+|+ +.+..-. . ...+++||+++||+|+.+.+.=.+ +.+.+.+-..+ ....|..
T Consensus 145 NaDGD~Livpq~G~-l~i~TEf--------G--~L~v~pgei~VIPRG~~frv~l~g--p~rgyi~E~~g~~f~LPdl-- 209 (429)
T TIGR01015 145 NADGDFLIVPQQGA-LLITTEF--------G--RLLVEPNEICVIPRGVRFRVTVLE--PARGYICEVYGAHFQLPDL-- 209 (429)
T ss_pred ccCCCEEEEEEeCc-EEEEEec--------c--ceEecCCCEEEecCccEEEEeeCC--CceEEEEeccCCcccCCCC--
Confidence 34789999999999 8777632 1 357999999999999998775554 44444332111 1223421
Q ss_pred eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545 94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA 163 (325)
Q Consensus 94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~ 163 (325)
=..|.+.++. .+-|..+...++......+-..++|... .+. .. +|. +.--+++|||.
T Consensus 210 --GpiG~nglan-------~RDF~~P~a~fed~~~~~~~~vv~K~~G----~l~~~~~~hsPfDVVaWhGn~~Pykydl~ 276 (429)
T TIGR01015 210 --GPIGANGLAN-------PRDFEAPVAAFEDREVPGPYTVINKFQG----SLFAAKQDHSPFDVVAWHGNYVPYKYDLK 276 (429)
T ss_pred --CcccccCCCC-------HHHcCCCccchhccccCCCeEEEEEeCC----eeEEEecCCCCcceeeecCcccceEeehh
Confidence 0122233322 2344444333333111111234555444 221 11 221 22457889987
Q ss_pred CCCCCee----ccCCeEEEEEcCC-CCcccccccceEE----EEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCC
Q 020545 164 NFPADFC----VKKAGMVTSFTGS-NFPFLEQVGLSCT----ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLN 233 (325)
Q Consensus 164 ~~~p~~~----~~~gG~~~~~~~~-~~p~L~~~gis~~----~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~ 233 (325)
+-.|.-+ -.+---.+++++. +.|...- .... |-...+++++.|-||.| .+|+++.+.|.-..-
T Consensus 277 ~F~pi~svs~dH~dPSI~tvltaps~~pg~av--~dFviFpPRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak----- 349 (429)
T TIGR01015 277 RFNVINSVSFDHPDPSIFTVLTAPSDRPGTAI--ADFVIFPPRWLVAEKTFRPPYYHRNCMSEFMGLITGAYDAK----- 349 (429)
T ss_pred heeeccccccccCCCCceEEEeccCCCCCceE--EEEEeeCCcccCCCCccCCCCCccchhhhhhhhcccccccc-----
Confidence 6554411 0111112222221 2222221 1111 22245899999999998 669888888753211
Q ss_pred CceEEeEEecCccEEEECCccEE
Q 020545 234 AKLVLDSEVEAGQLLVVPRCFVV 256 (325)
Q Consensus 234 g~~~~~~~l~~Gdv~vvP~G~~h 256 (325)
+..+.+|.+-.=|.+.+|
T Consensus 350 -----~~gf~pGg~SlH~~~~pH 367 (429)
T TIGR01015 350 -----EGGFVPGGGSLHNMMTPH 367 (429)
T ss_pred -----cCCcCCCeeeecCCCCCC
Confidence 012668888888888876
No 72
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.69 E-value=0.0046 Score=57.12 Aligned_cols=72 Identities=17% Similarity=0.058 Sum_probs=45.5
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS 269 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~ 269 (325)
|-+..++.+.+|=...|||| ++++-+||++|....+ +.+.-..-|.+|.-+..|+|..|+..+ +++.+.|+.
T Consensus 35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e 107 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE 107 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence 67889999999999999999 5899999999975553 333333469999999999999998766 344466653
No 73
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.68 E-value=0.0082 Score=55.75 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII 259 (325)
Q Consensus 203 g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~ 259 (325)
+....|||| +..|+.||++|++.+.+ +| +.+ .+.+||+++||+|..|...
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~-~~~--~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NG-KRV--LLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CC-EEE--EECCCcEEEeCCCCcccee
Confidence 345689999 68899999999998776 33 334 6999999999999999643
No 74
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.63 E-value=0.0099 Score=50.36 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=35.7
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
.++|++|-++|. ..+.+++.+ +.+.-.+++||+|.+|++++|.=+-..+
T Consensus 52 e~eE~FyQ~kG~-m~Lkv~e~g------~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 52 ETEEFFYQLKGD-MCLKVVEDG------KFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp SS-EEEEEEES--EEEEEEETT------EEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred CcceEEEEEeCc-EEEEEEeCC------ceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 478999999999 999999876 4557899999999999999998776543
No 75
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.55 E-value=0.0064 Score=56.57 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=45.9
Q ss_pred cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545 5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
.|++--.-+|+++.-++.||++|+ |.+.+ ++ + ...+++||+++||+|.+|.+...++
T Consensus 25 ~~~~~~~~~H~h~~~~l~~v~~G~-~~~~i---~~------~-~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 25 RYPQDVFAEHTHEFCELVMVWRGN-GLHVL---NE------R-PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCCccccceEEEEEEecCc-EEEEE---CC------E-EEeecCCcEEEECCCCcccccccCC
Confidence 355555667877888999999999 99887 52 3 5889999999999999998865443
No 76
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.53 E-value=0.0091 Score=55.47 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=41.2
Q ss_pred eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545 11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN 70 (325)
Q Consensus 11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~ 70 (325)
.-||+++..|+.||++|+ +.+.+ ++ + ...+.+||+++||+|..|.....
T Consensus 36 ~~~H~H~~~ei~~v~~G~-~~~~i---~~------~-~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 36 SGLHQHDYYEFTLVLTGR-YYQEI---NG------K-RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred CCCcccccEEEEEEEece-EEEEE---CC------E-EEEECCCcEEEeCCCCccceeee
Confidence 357888999999999999 98777 53 3 47999999999999999966544
No 77
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.53 E-value=0.0098 Score=56.40 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
.+...-.+..|..+||| +--|+.|+++|++.+.+ +| +.+ .+.+||+++|+.|.+|....
T Consensus 28 ~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g-~~~--~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 28 LEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NN-EKV--QINQGHITLFWACTPHQLTD 86 (302)
T ss_pred eEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CC-EEE--EEcCCcEEEEecCCcccccc
Confidence 34455667789999999 57799999999987654 23 333 59999999999999997543
No 78
>PLN02658 homogentisate 1,2-dioxygenase
Probab=96.51 E-value=0.066 Score=52.98 Aligned_cols=204 Identities=12% Similarity=0.054 Sum_probs=105.5
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec-CCCCCCCcce
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET-SRAYVPGEFS 93 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~-~~~~~p~~~~ 93 (325)
+.|.++++++.+|+ +.+..-. . ...+++||+++||+|+.+.+ +..+.+.+.+.+-.. +....|..
T Consensus 144 NaDGD~Livpq~G~-l~i~TEf--------G--~L~v~pgei~VIPRG~~frv-~l~~gp~rgyv~E~~g~~f~LPdl-- 209 (435)
T PLN02658 144 NADGDFLIVPQQGR-LWIKTEL--------G--KLQVSPGEIVVIPRGFRFAV-DLPDGPSRGYVLEIFGGHFQLPDL-- 209 (435)
T ss_pred cCCCCEEEEEEeCC-EEEEEec--------c--ceEecCCCEEEecCccEEEE-ecCCCCeeEEEEeecCCcccCCCC--
Confidence 45789999999999 8777632 1 25799999999999999766 433345555443211 12233431
Q ss_pred eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545 94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA 163 (325)
Q Consensus 94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~ 163 (325)
=..|.+.++. .+-|..+....+.... .+-..++|... .+. .. +|. +.--+++|||.
T Consensus 210 --GpiG~nglan-------pRDF~~P~a~~ed~~~-~~~~vv~K~~g----~l~~~~~~hsPfDVVaWhGn~~Pykydl~ 275 (435)
T PLN02658 210 --GPIGANGLAN-------PRDFLHPVAWFEDGSR-PGYTIVQKFGG----ELFTAKQDFSPFNVVAWHGNYVPYKYDLS 275 (435)
T ss_pred --CcccccCCCC-------HhHccCCccccccccC-CcEEEEEEeCC----eeEEEecCCCCceEeeecCcccceEechH
Confidence 0122223322 2334444322222111 11134555444 221 01 221 22347888887
Q ss_pred CCCCCee----ccCCeEEEEEcC-CCCcccccccceE--EEEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCCCc
Q 020545 164 NFPADFC----VKKAGMVTSFTG-SNFPFLEQVGLSC--TILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAK 235 (325)
Q Consensus 164 ~~~p~~~----~~~gG~~~~~~~-~~~p~L~~~gis~--~~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~ 235 (325)
+-.|.-+ -.+---.+++++ .+-|.....+.-+ -|-....++++.|-||.| .+|+++.+.|.-.. .
T Consensus 276 ~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~vae~TfrpPyyHrN~~sEfmgli~G~y~a-----k-- 348 (435)
T PLN02658 276 KFCPVNTVLFDHADPSINTVLTAPTDKPGVALADFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEA-----K-- 348 (435)
T ss_pred HceeccccccccCCCCceEEEeccCCCCCccccceEEECCccccccCccCCCCCccchhhhhhhhccccccc-----c--
Confidence 6444310 011111222222 2344443333211 111222389999999999 66998888886211 0
Q ss_pred eEEeEEecCccEEEECCccEE
Q 020545 236 LVLDSEVEAGQLLVVPRCFVV 256 (325)
Q Consensus 236 ~~~~~~l~~Gdv~vvP~G~~h 256 (325)
+..+.+|.+-.=|.+.+|
T Consensus 349 ---~~gf~pGg~SLH~~~~pH 366 (435)
T PLN02658 349 ---ADGFLPGGASLHSCMTPH 366 (435)
T ss_pred ---cCCccCCeeeecCCCCCC
Confidence 012678888888888886
No 79
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.48 E-value=0.0042 Score=53.27 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=49.0
Q ss_pred eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEE-EeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVL-GLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~-~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
+|+-+|-+.-.||.||+.|. |+.-+-+.+. +.++ -+++||++++|+|.-|-+-=+.+.-.+++-+|
T Consensus 84 ~FfEEhlh~deeiR~il~Gt-gYfDVrd~dd------~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF 150 (179)
T KOG2107|consen 84 SFFEEHLHEDEEIRYILEGT-GYFDVRDKDD------QWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLF 150 (179)
T ss_pred HHHHHhcCchhheEEEeecc-eEEeeccCCC------CEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHh
Confidence 46677866779999999999 9998876653 4444 79999999999999998755544333333333
No 80
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.46 E-value=0.013 Score=55.75 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=41.7
Q ss_pred CCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545 202 ANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262 (325)
Q Consensus 202 pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~ 262 (325)
|.....+|||. ..|++||.+|+|...+=+ +. ..+++||+++||+|..|.....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~----~~--~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLND----RP--YRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECC----EE--EeecCCeEEEECCCCeecccccC
Confidence 33446899984 899999999999965432 22 35999999999999999865433
No 81
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.42 E-value=0.014 Score=54.68 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=40.3
Q ss_pred ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
-..|||| +-.|+.||.+|++.+.| +| +.+ .+.+||+++||.|.+|....
T Consensus 30 ~~~~H~H-~~~ei~~i~~G~~~~~i---~~-~~~--~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 30 TFVEHTH-QFCEIVIVWRGNGLHVL---ND-HPY--RITCGDVFYIQAADHHSYES 78 (290)
T ss_pred CCccccc-cceeEEEEecCceEEEE---CC-eee--eecCCeEEEEcCCCcccccc
Confidence 4569999 68899999999999886 33 233 59999999999999998543
No 82
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=96.40 E-value=0.12 Score=51.08 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=34.2
Q ss_pred CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545 212 ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262 (325)
Q Consensus 212 ~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~ 262 (325)
.....|+.|++|++++. . ++. .+ .|++|++++||++...+...|+
T Consensus 337 ~~~~~Illv~~G~~~i~--~-~~~-~~--~l~~G~~~fipa~~~~~~~~g~ 381 (389)
T PRK15131 337 QQSAAILFCVEGEAVLW--K-GEQ-QL--TLKPGESAFIAANESPVTVSGH 381 (389)
T ss_pred CCCcEEEEEEcceEEEE--e-CCe-EE--EECCCCEEEEeCCCccEEEecc
Confidence 35679999999999874 2 332 23 5999999999999887665554
No 83
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.39 E-value=0.012 Score=50.31 Aligned_cols=58 Identities=16% Similarity=0.327 Sum_probs=41.8
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAI 258 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~ 258 (325)
.|++...+|+... ..|..+-+|+-||++|+..+. +. |+ .+ .-++|||++||+|.-...
T Consensus 76 ~l~~Gf~~le~~~---f~wtl~YDEi~~VlEG~L~i~--~~-G~-~~--~A~~GDvi~iPkGs~I~f 133 (152)
T PF06249_consen 76 RLSAGFMELEKTS---FPWTLTYDEIKYVLEGTLEIS--ID-GQ-TV--TAKPGDVIFIPKGSTITF 133 (152)
T ss_dssp SSEEEEEEEEEEE---EEEE-SSEEEEEEEEEEEEEE--ET-TE-EE--EEETT-EEEE-TT-EEEE
T ss_pred ceeeEEEEEeCCC---ccEEeecceEEEEEEeEEEEE--EC-CE-EE--EEcCCcEEEECCCCEEEE
Confidence 4688889999853 479999999999999976655 43 54 44 377999999999997554
No 84
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.36 E-value=0.0098 Score=50.40 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=33.0
Q ss_pred ecCC-CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEE
Q 020545 210 YTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA 257 (325)
Q Consensus 210 ~h~~-A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~ 257 (325)
||-| +.|+.|-++|...+-+++.+..+ +-.+++||+|.+|++.+|.
T Consensus 48 yHine~eE~FyQ~kG~m~Lkv~e~g~~k--di~I~EGe~fLLP~~vpHs 94 (151)
T PF06052_consen 48 YHINETEEFFYQLKGDMCLKVVEDGKFK--DIPIREGEMFLLPANVPHS 94 (151)
T ss_dssp EEE-SS-EEEEEEES-EEEEEEETTEEE--EEEE-TTEEEEE-TT--EE
T ss_pred cccCCcceEEEEEeCcEEEEEEeCCceE--EEEeCCCcEEecCCCCCCC
Confidence 5555 78999999999999999975433 4579999999999999998
No 85
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.27 E-value=0.014 Score=54.23 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=42.8
Q ss_pred cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
.-+....||||.+--++.|+.+|++.+.+ ++ +.+ .+++||++++|+|.+|....
T Consensus 31 ~~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~-~~~--~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 31 FFGRNMPVHFHDRYYQLHYLTEGSIALQL---DE-HEY--SEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred ccCCCCCCcccccceeEEEEeeCceEEEE---CC-EEE--EecCCeEEEeCCCCcccccc
Confidence 34456899999767899999999997665 22 233 69999999999999998654
No 86
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.25 E-value=0.017 Score=47.19 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=44.2
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE-EEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV-VAII 259 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~-h~~~ 259 (325)
.+.+..=.-.||-. +|+-...|.+|+++|++.++ +++.... ++++||++++|+|+. -|..
T Consensus 44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T---~d~Ge~v--~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVT---PDGGEPV--EVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEE---CCCCeEE--EEcCCCEEEECCCCeEEEEE
Confidence 34555666777766 45566799999999988766 3333444 599999999999997 5654
No 87
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.23 E-value=0.0061 Score=52.28 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=46.6
Q ss_pred CccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545 204 AMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG 261 (325)
Q Consensus 204 ~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g 261 (325)
.+.++|-|.+. ||-||+.|.|..-|-+-+++ =++--++.||++++|+|.-|-.-..
T Consensus 84 ~FfEEhlh~de-eiR~il~GtgYfDVrd~dd~-WIRi~vekGDlivlPaGiyHRFTtt 139 (179)
T KOG2107|consen 84 SFFEEHLHEDE-EIRYILEGTGYFDVRDKDDQ-WIRIFVEKGDLIVLPAGIYHRFTTT 139 (179)
T ss_pred HHHHHhcCchh-heEEEeecceEEeeccCCCC-EEEEEEecCCEEEecCcceeeeecC
Confidence 47899999765 99999999999999998864 3444589999999999999976443
No 88
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.21 E-value=0.009 Score=48.79 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY 68 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~ 68 (325)
+.+|.+|+++|+ +.++ +++ .+ ...+++||++++|+|..--|.
T Consensus 62 ~~~E~chil~G~-v~~T---~d~-----Ge-~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 62 DEDEFCHILEGR-VEVT---PDG-----GE-PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred ccceEEEEEeeE-EEEE---CCC-----Ce-EEEEcCCCEEEECCCCeEEEE
Confidence 458999999999 5443 353 34 578999999999999976553
No 89
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.19 E-value=0.082 Score=46.43 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=53.3
Q ss_pred cCCCccCCeecCC--CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545 201 DANAMLSPTYTAD--SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSIT 271 (325)
Q Consensus 201 ~pg~~~~Ph~h~~--A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~~ 271 (325)
.+|.++..|+|.. -.++++|++|+...-+||..-. +.....|.+ +..++||.|++|-..+-.+++.++-..
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 6799999999843 6899999999999999996421 233346665 679999999999877744545544433
No 90
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=96.15 E-value=0.17 Score=48.17 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~ 262 (325)
.++.++++... .. ....+...+++|++|++++.. ++. . ..|++|+.++||++...+...|+
T Consensus 235 F~~~~~~~~~~-~~--~~~~~~~~il~v~~G~~~i~~---~~~-~--~~l~~G~~~~ipa~~~~~~i~g~ 295 (302)
T TIGR00218 235 FSVYKWDISGK-AE--FIQQQSALILSVLEGSGRIKS---GGK-T--LPLKKGESFFIPAHLGPFTIEGE 295 (302)
T ss_pred eEEEEEEeCCc-ee--eccCCCcEEEEEEcceEEEEE---CCE-E--EEEecccEEEEccCCccEEEEee
Confidence 34555555433 11 112457789999999998852 232 2 35999999999999976655553
No 91
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.14 E-value=0.016 Score=49.62 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=38.6
Q ss_pred ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
.+...+-+|+-||++|+ -.+.. ++ + ....++|||++||+|+..-+--. ...+++.+..
T Consensus 89 f~wtl~YDEi~~VlEG~-L~i~~---~G------~-~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~y 146 (152)
T PF06249_consen 89 FPWTLTYDEIKYVLEGT-LEISI---DG------Q-TVTAKPGDVIFIPKGSTITFSTP--DYARFFYVTY 146 (152)
T ss_dssp EEEE-SSEEEEEEEEEE-EEEEE---TT------E-EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEEE
T ss_pred ccEEeecceEEEEEEeE-EEEEE---CC------E-EEEEcCCcEEEECCCCEEEEecC--CCEEEEEEEC
Confidence 35566789999999999 65553 33 3 47899999999999998766332 3466666553
No 92
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.14 E-value=0.015 Score=54.09 Aligned_cols=58 Identities=5% Similarity=-0.038 Sum_probs=45.1
Q ss_pred eeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545 10 IVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV 78 (325)
Q Consensus 10 ~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~ 78 (325)
-+.||+++ --++.||++|+ +.+.+ ++ + ...+++||++++|+|.+|-+...++.+..++
T Consensus 35 ~~~~H~H~~~~~l~~~~~G~-~~~~~---~~-----~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 35 NMPVHFHDRYYQLHYLTEGS-IALQL---DE-----H--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCcccccceeEEEEeeCc-eEEEE---CC-----E--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 46778776 58999999999 88777 43 2 5789999999999999999876655443333
No 93
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.08 E-value=0.0086 Score=55.39 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=44.7
Q ss_pred ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545 6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG 71 (325)
Q Consensus 6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g 71 (325)
|.+.-+-+|+++..|+.||++|. |.+.+ ++ + ...+++||+++||+|..|.+.+..
T Consensus 23 ~~~~~~~~H~H~~~ei~~v~~G~-~~~~i---~~-----~--~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 23 LPQAAFPEHHHDFHEIVIVEHGT-GIHVF---NG-----Q--PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred CccccccccccCceeEEEEecCc-eeeEe---cC-----C--cccccCCcEEEECCCccchhhhcc
Confidence 34445567888999999999999 98887 43 2 478999999999999999877654
No 94
>PRK13502 transcriptional activator RhaR; Provisional
Probab=95.98 E-value=0.036 Score=51.51 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=43.4
Q ss_pred ecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545 200 LDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262 (325)
Q Consensus 200 l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~ 262 (325)
..|+-...+||| +..++.||.+|++++.+= + +.+ .+++||+++||+|.+|.....+
T Consensus 25 ~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~---~-~~~--~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 25 RYPQDVFAEHTH-EFCELVMVWRGNGLHVLN---E-RPY--RITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCCcccc-ceEEEEEEecCcEEEEEC---C-EEE--eecCCcEEEECCCCcccccccC
Confidence 344445789998 589999999999998862 2 233 5999999999999999865433
No 95
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=95.88 E-value=0.065 Score=47.06 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=52.6
Q ss_pred cCCCccCCeecCCC---CEEEEEEeCcEEEEEEeCCC-----ceEEeEEecCcc--EEEECCccEEEEEcCCCCEEEEEE
Q 020545 201 DANAMLSPTYTADS---VQVFYVVKGSGKAQIVGLNA-----KLVLDSEVEAGQ--LLVVPRCFVVAIIAGPEGIECFSI 270 (325)
Q Consensus 201 ~pg~~~~Ph~h~~A---~ei~yV~~G~~~~~vv~p~g-----~~~~~~~l~~Gd--v~vvP~G~~h~~~~g~~~~~~~~~ 270 (325)
.+|-++..|+|..- .+++.|++|+...-++|-.- .+.....|.+++ .++||+|++|-..+-.++..++-.
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 34999999999886 79999999999999999531 134455676665 899999999988776655554443
Q ss_pred eC
Q 020545 271 TT 272 (325)
Q Consensus 271 ~~ 272 (325)
.+
T Consensus 131 ~t 132 (176)
T PF00908_consen 131 VT 132 (176)
T ss_dssp ES
T ss_pred cC
Confidence 33
No 96
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.87 E-value=0.043 Score=46.61 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=44.9
Q ss_pred ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
|++ -..|...+-+|+-||++|+ .-+-+ ++ + .-.-++|||++||.|.-.-+--.|. ++++.+.
T Consensus 107 ~~~-~tf~wtl~yDe~d~VlEGr-L~V~~---~g-----~--tv~a~aGDvifiPKgssIefst~ge--a~flyvt 168 (176)
T COG4766 107 MKN-TTFPWTLNYDEIDYVLEGR-LHVRI---DG-----R--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT 168 (176)
T ss_pred ecc-ccCcceecccceeEEEeee-EEEEE---cC-----C--eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence 455 4568888999999999999 55544 32 3 3468999999999999876643333 6666654
No 97
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=95.86 E-value=0.021 Score=54.14 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=43.6
Q ss_pred eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCC
Q 020545 9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD 74 (325)
Q Consensus 9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~ 74 (325)
...-+||++.-|+.|+++|+ +.+.+ ++ + ...+++||+++|++|.+|-+...++..
T Consensus 37 ~m~~~HwH~e~Ei~yv~~G~-~~~~i---~g------~-~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 37 IMPTSHWHGQVEVNVPFDGD-VEYLI---NN------E-KVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred CCCCCCccccEEEEEecCCc-EEEEE---CC------E-EEEEcCCcEEEEecCCcccccccCCCc
Confidence 33556888999999999999 87666 43 2 578999999999999999776554433
No 98
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.83 E-value=0.021 Score=53.72 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred EEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeC
Q 020545 196 TILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITT 272 (325)
Q Consensus 196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~ 272 (325)
+.--|-||-....|=|. -+.+-||++|+|-.++|+. +++ .+++||++..|++..|---+ |++++.|+--++
T Consensus 95 glQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG--er~---~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 95 GLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG--ERT---PMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred hhheecCcccCCccccc-ccceEEEEeccceeEeecC--cee---eccCCCEEEccCceeccCCCCCCCceEEEcccc
Confidence 34458899999999985 5589999999999999984 454 48999999999999997544 889999986554
No 99
>PRK13503 transcriptional activator RhaS; Provisional
Probab=95.64 E-value=0.033 Score=51.46 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=42.4
Q ss_pred cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545 201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG 261 (325)
Q Consensus 201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g 261 (325)
.+.....+||| +..||.||.+|.+...+=+. . ..+++||+++||+|-.|.....
T Consensus 23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~----~--~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ----P--YTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred Ccccccccccc-CceeEEEEecCceeeEecCC----c--ccccCCcEEEECCCccchhhhc
Confidence 34566788998 78899999999998765432 2 2599999999999999974443
No 100
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.59 E-value=0.068 Score=48.22 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=49.6
Q ss_pred eEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc----------------------------------eEE
Q 020545 194 SCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK----------------------------------LVL 238 (325)
Q Consensus 194 s~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~----------------------------------~~~ 238 (325)
....+-|.+ |+....|+.+ .+-+..+++|+=++.++.|.-. +.+
T Consensus 131 ~~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~ 209 (251)
T PF13621_consen 131 QSSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY 209 (251)
T ss_dssp CEEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred cccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence 345567777 6677888876 7899999999999999998510 245
Q ss_pred eEEecCccEEEECCccEEEEEcC-CCC
Q 020545 239 DSEVEAGQLLVVPRCFVVAIIAG-PEG 264 (325)
Q Consensus 239 ~~~l~~Gdv~vvP~G~~h~~~~g-~~~ 264 (325)
...|++||+++||+|+.|+..+. +++
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEEECCCeEEEECCCCeEEEEEcCCCC
Confidence 57899999999999999998776 444
No 101
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=0.26 Score=43.09 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=51.6
Q ss_pred CCCccCCeecCCC-CEEEEEEeCcEEEEEEeCCC-c----eEEeEEecCc--cEEEECCccEEEEEcCCCCEEEE
Q 020545 202 ANAMLSPTYTADS-VQVFYVVKGSGKAQIVGLNA-K----LVLDSEVEAG--QLLVVPRCFVVAIIAGPEGIECF 268 (325)
Q Consensus 202 pg~~~~Ph~h~~A-~ei~yV~~G~~~~~vv~p~g-~----~~~~~~l~~G--dv~vvP~G~~h~~~~g~~~~~~~ 268 (325)
+|-++..|||..- .+++.|++|++..-.++-.- + +.....+.+- .++.||.|++|=..+.++.++++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~ 128 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVV 128 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEE
Confidence 9999999999998 99999999999999999642 1 2223345544 89999999999877755544433
No 102
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=95.03 E-value=0.17 Score=42.22 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=36.2
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCc-EEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGD-VIPVPLGSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GD-v~~vP~G~~~~~~N~g~~~l~~~~~~ 81 (325)
|....++++|++|+ ..+.+-+.. ....+.|...+ .+.||+|..|-+.|.++. ++++.+.
T Consensus 51 Hk~~~~~~~~l~Gs-~~v~~~d~~------~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a 110 (131)
T PF05523_consen 51 HKKTTQWFIVLSGS-FKVVLDDGR------EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA 110 (131)
T ss_dssp ESS--EEEEEEES--EEEEEE-SS-------EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred cccccEEEEEEeCE-EEEEEecCC------CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence 66789999999999 888875544 23467777765 899999999999999766 6666655
No 103
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=94.83 E-value=0.2 Score=46.44 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=86.3
Q ss_pred eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545 11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG 90 (325)
Q Consensus 11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~ 90 (325)
.-||.+++++-.||++|. ...+ +. +....-|.+|.-+..|+|..|+-...+++.+.++-+.+ +
T Consensus 49 ~pph~H~~~~~~~Vi~G~-~~~~----~~-----~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~-------g 111 (251)
T PF14499_consen 49 SPPHIHNADYRGTVISGE-LHNG----DP-----KAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIGE-------G 111 (251)
T ss_dssp E--BEESS-EEEEEEESE-EEET----TE-----E-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S---------
T ss_pred CCCcceeeeEEEEEEEeE-EEcC----CC-----cccceecCCCceEeccCCCceeeeccCccEEEEEEeCC-------C
Confidence 457878999999999999 3332 21 21235699999999999999988777665565543321 1
Q ss_pred cceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCee
Q 020545 91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFC 170 (325)
Q Consensus 91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~ 170 (325)
.|.+- | .+++|.-.+.-+.. +...|+=.... .+... +- ++.
T Consensus 112 ---p~~v~---------p---~~~~~~~~e~p~n~-----~~~~ivwld~~---dl~W~-----------~~---~~~-- 152 (251)
T PF14499_consen 112 ---PYDVK---------P---SEEAFDNGERPINV-----DKDNIVWLDAS---DLEWI-----------SA---PPG-- 152 (251)
T ss_dssp ----EE---------------------SS--TT-------GGG-EEEEECC---CS--E-----------E----SSS--
T ss_pred ---ccccc---------c---cccccccccccccc-----ccccceEeccc---cCCcc-----------cc---CCC--
Confidence 11100 0 02233333222211 11234433331 11100 00 011
Q ss_pred ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 171 VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 171 ~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
...+-.+..+-.. |. +-.+...++.|-.|-=-.+|+|+ ..+=+|||+|+...++-.-.. ...|.+|.-|.-
T Consensus 153 ~~~g~~~a~Lwgd--~~--~g~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~----~~~L~~GSYf~s 223 (251)
T PF14499_consen 153 PPPGAQIAFLWGD--PN--TGQYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN----FGTLDPGSYFGS 223 (251)
T ss_dssp TT-SEEEEEEEE---TT--S-EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET----TEEEEE-TT-EE
T ss_pred CCCcceEEEEecC--CC--CCceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC----CccccCCccccc
Confidence 0123334433322 11 11234556777777778889986 668899999999887654321 236889999999
Q ss_pred CCccEEEEEcCCCCEEEEEEe
Q 020545 251 PRCFVVAIIAGPEGIECFSIT 271 (325)
Q Consensus 251 P~G~~h~~~~g~~~~~~~~~~ 271 (325)
|....|-..++++++.++.-.
T Consensus 224 ~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 224 PGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp --E------EESS-EEEEEEE
T ss_pred CCcccccccccCCCEEEEEEE
Confidence 999999865777777766544
No 104
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.80 E-value=0.34 Score=46.65 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=104.1
Q ss_pred CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCC-CCCCCccee
Q 020545 16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSR-AYVPGEFSY 94 (325)
Q Consensus 16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~-~~~p~~~~~ 94 (325)
.|.++++|+.+|+ .+ +.+.-+ +.+|++||..+||+|+.+-..=.+.+ ++++.+-.... ...| +
T Consensus 144 ADge~Livpq~G~-l~--l~te~G--------~l~v~pgeiavIPRG~~frve~~~~~-~rgy~~En~ga~~~lp----e 207 (427)
T COG3508 144 ADGELLIVPQQGE-LR--LKTELG--------VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYGCENYGAKFRLP----E 207 (427)
T ss_pred CCCCEEEEeecce-EE--EEEeec--------eEEecCCcEEEeeCCceEEEEecCCc-eEEEEEeecccccccc----c
Confidence 3567899999998 44 333332 46899999999999999988776544 55554432111 1112 1
Q ss_pred eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeecC
Q 020545 95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFAN 164 (325)
Q Consensus 95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~~ 164 (325)
.=+-|++++..- +-|+++..-.+. +.++-..++|... ++. +. +|. +.-..++|++..
T Consensus 208 ~G~ig~n~lanp-------RDf~tPvar~ed--~e~~~qlvvK~~g----~l~~~e~~hsPlDVVaWhGnl~Pykydl~~ 274 (427)
T COG3508 208 LGPIGANGLANP-------RDFKTPVARYED--SEGPTQLVVKTHG----GLWAVELDHSPLDVVAWHGNLAPYKYDLRD 274 (427)
T ss_pred ccccccccccCh-------hhccCceeeecc--cCCCeEEEEEecC----cEEEEecCCCCceeEeecCcccceEeeeec
Confidence 112333333321 223333221111 3333356676555 332 11 221 224567888876
Q ss_pred CCCC----eeccCCeEEEEEcC-CCCcccccccceEE--EEEecCCCccCCeecCC-CCEEEEEEeCcE--EEEEEeCCC
Q 020545 165 FPAD----FCVKKAGMVTSFTG-SNFPFLEQVGLSCT--ILKLDANAMLSPTYTAD-SVQVFYVVKGSG--KAQIVGLNA 234 (325)
Q Consensus 165 ~~p~----~~~~~gG~~~~~~~-~~~p~L~~~gis~~--~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~--~~~vv~p~g 234 (325)
-+|. +.-++---.+++++ .+-|.+...+.=.. |....+++++.|.||-| ++|++..+.|.- +.
T Consensus 275 f~pi~t~~~dhPdPSifTvltapsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~ydak~------- 347 (427)
T COG3508 275 FNPIGTISYDHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQYDAKA------- 347 (427)
T ss_pred cccccceeccCCCCceEEEEecCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhchhhhhc-------
Confidence 5443 11121112233332 33444432211111 13345699999999988 889988888852 22
Q ss_pred ceEEeEEecCccEEEECCccEE
Q 020545 235 KLVLDSEVEAGQLLVVPRCFVV 256 (325)
Q Consensus 235 ~~~~~~~l~~Gdv~vvP~G~~h 256 (325)
..+.+|++-.=+.++.|
T Consensus 348 -----~GfvpGg~sLH~~m~~H 364 (427)
T COG3508 348 -----EGFVPGGASLHNCMSAH 364 (427)
T ss_pred -----cCcCcCcceeccccccc
Confidence 12456666666666655
No 105
>PF12852 Cupin_6: Cupin
Probab=94.68 E-value=0.074 Score=46.51 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=36.5
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545 18 LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 18 a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
...+.+|++|+ +++.+ . +. .+ ...|++||++++|+|.+|++.-..+
T Consensus 35 ~~~fh~V~~G~-~~l~~-~-~~-----~~-~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 35 GASFHVVLRGS-CWLRV-P-GG-----GE-PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred ceEEEEEECCe-EEEEE-c-CC-----CC-eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 36789999999 99985 2 21 22 5789999999999999999966544
No 106
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=94.58 E-value=0.2 Score=47.95 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=45.8
Q ss_pred eEEEEEecCCC--ccCCeecCCCCEEEEEEeCcEEEEEEeCCC-----------------ceEEeEEecCccEEEECCcc
Q 020545 194 SCTILKLDANA--MLSPTYTADSVQVFYVVKGSGKAQIVGLNA-----------------KLVLDSEVEAGQLLVVPRCF 254 (325)
Q Consensus 194 s~~~v~l~pg~--~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g-----------------~~~~~~~l~~Gdv~vvP~G~ 254 (325)
..+.+.+.|+| =+.|||-. -+-++.=+.|+=+..+..+.. ....+..|++|||+|||+|+
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 45667899999 89999942 344445566888888887421 11345689999999999999
Q ss_pred EEEEEcCCCCEEE
Q 020545 255 VVAIIAGPEGIEC 267 (325)
Q Consensus 255 ~h~~~~g~~~~~~ 267 (325)
+|.-.+.+..+.+
T Consensus 193 ~H~~~~~~~S~hl 205 (319)
T PF08007_consen 193 WHQAVTTDPSLHL 205 (319)
T ss_dssp EEEEEESS-EEEE
T ss_pred cCCCCCCCCceEE
Confidence 9997775544443
No 107
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=94.43 E-value=0.073 Score=48.19 Aligned_cols=59 Identities=7% Similarity=-0.093 Sum_probs=46.7
Q ss_pred eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545 9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE 82 (325)
Q Consensus 9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~ 82 (325)
.-+-.|.+...|+.+|++|. +.+.+ ....+||++..|+|..|-..+.+++++..+++.|
T Consensus 138 ~~~p~H~H~G~E~tlVLeG~-----f~de~----------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 138 QSIPQHTHKGFELTLVLHGA-----FSDET----------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred CccCCCcCCCcEEEEEEEEE-----EEcCC----------CccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 33445555678999999999 22221 3479999999999999999999988999998885
No 108
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.29 E-value=0.29 Score=41.72 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=43.3
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAI 258 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~ 258 (325)
.+++.....++-. --|..+-+|+-||++|+..+.+- |+ .+. -.+|||++||.|.-.-+
T Consensus 99 ~l~aG~m~~~~~t---f~wtl~yDe~d~VlEGrL~V~~~---g~-tv~--a~aGDvifiPKgssIef 156 (176)
T COG4766 99 RLGAGLMEMKNTT---FPWTLNYDEIDYVLEGRLHVRID---GR-TVI--AGAGDVIFIPKGSSIEF 156 (176)
T ss_pred ccccceeeecccc---CcceecccceeEEEeeeEEEEEc---CC-eEe--cCCCcEEEecCCCeEEE
Confidence 3567778888832 35879999999999998876653 22 332 57999999999997544
No 109
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=94.08 E-value=0.13 Score=39.81 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=37.3
Q ss_pred cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545 7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV 78 (325)
Q Consensus 7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~ 78 (325)
+.+.+-.|.+...|.+||++|+ +.+.+ . ...+||.+..|+|..|-..- ++.+.++
T Consensus 33 pG~~~p~H~H~g~ee~~VLeG~-----~~d~~------~----~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 33 PGASLPRHRHPGGEEILVLEGE-----LSDGD------G----RYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TTEEEEEEEESS-EEEEEEECE-----EEETT------C----EEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred CCCCcCccCCCCcEEEEEEEEE-----EEECC------c----cCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 4455555555778889999999 33332 2 35999999999999998884 4455443
No 110
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=93.90 E-value=0.28 Score=48.66 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545 183 SNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG 261 (325)
Q Consensus 183 ~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g 261 (325)
..-+.++. |+++..-..+ .+| -.--+|.++++++|+.+|++++.-.. | .+ ++++||++|||+|..+...-.
T Consensus 116 ~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~--G--~L--~v~pGd~~VIPRG~~~rv~l~ 187 (424)
T PF04209_consen 116 AGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETEF--G--RL--DVRPGDYVVIPRGTRFRVELP 187 (424)
T ss_dssp ECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEETT--E--EE--EE-TTEEEEE-TT--EEEE-S
T ss_pred CccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEecC--e--eE--EEcCCeEEEECCeeEEEEEeC
Confidence 44455543 5554433333 345 45557889999999999998877433 4 23 489999999999999875443
Q ss_pred CCCEE
Q 020545 262 PEGIE 266 (325)
Q Consensus 262 ~~~~~ 266 (325)
.++.
T Consensus 188 -~p~r 191 (424)
T PF04209_consen 188 -GPAR 191 (424)
T ss_dssp -SSEE
T ss_pred -CCce
Confidence 4444
No 111
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.42 E-value=0.3 Score=45.52 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=39.3
Q ss_pred ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCC
Q 020545 12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS 73 (325)
Q Consensus 12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~ 73 (325)
-|+-.+.-.+.|+++|+ |.+-+ ++ + .+.+++||++++|+|.+|.+....+.
T Consensus 43 r~~~~~~~~i~~~~~G~-~~~~~---~~------~-~~~~~~g~~i~i~p~~~h~~~~~~~~ 93 (290)
T PRK10572 43 RPLGMKGYILNLTIRGQ-GVIFN---GG------R-AFVCRPGDLLLFPPGEIHHYGRHPDS 93 (290)
T ss_pred cCCCccceEEEEEEecc-EEEec---CC------e-eEecCCCCEEEECCCCceeeccCCCC
Confidence 34444567889999999 88754 42 2 58899999999999999988776554
No 112
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.13 E-value=0.41 Score=43.23 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=107.4
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcceeee
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFL 96 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~f~ 96 (325)
.+....||++|+ ..+.+ ++ + ++.|++|+-.++|+|.-+-+.|...++.++.-+.. .|.
T Consensus 82 ~ae~~lfVv~Ge-~tv~~---~G------~-th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk-----------~Y~ 139 (264)
T COG3257 82 GAETFLFVVSGE-ITVKA---EG------K-THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRK-----------RYQ 139 (264)
T ss_pred cceEEEEEEeee-EEEEE---cC------e-EEEeccCCeEEeCCCCcceEeeccCCceEEEEEee-----------cce
Confidence 466789999999 77766 42 3 68999999999999999999999888887766542 110
Q ss_pred eccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccCCeE
Q 020545 97 LTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGM 176 (325)
Q Consensus 97 laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~gG~ 176 (325)
. ++-+ |-.+.++ .++. .+. +.| =|+ .+|-+
T Consensus 140 ~-------------------------VdG~---~~P~~~~-~Ne~---ei~-~~~--------------m~g---tdg~~ 169 (264)
T COG3257 140 P-------------------------VEGV---QAPELVS-GNES---EIE-PSP--------------MEG---TDGVI 169 (264)
T ss_pred e-------------------------ecCc---cCCccee-cChh---hCC-CCC--------------CCC---CCCeE
Confidence 0 0100 0001111 1110 000 011 122 13445
Q ss_pred EEEEcCCCCcccccccceEEEEEecCCCcc---CCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545 177 VTSFTGSNFPFLEQVGLSCTILKLDANAML---SPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC 253 (325)
Q Consensus 177 ~~~~~~~~~p~L~~~gis~~~v~l~pg~~~---~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G 253 (325)
.+.++++++ .-++-+..++++|||.. +-|+ . .-=.||++|++.-..=. .-+ .+++||.+..-+.
T Consensus 170 attv~P~d~----r~Dmhv~ivsFePGa~ip~aEtHv-m--EHGlyvLeGk~vYrLn~----dwv--~V~aGD~mwm~A~ 236 (264)
T COG3257 170 ATTVLPKEL----RFDMHVHIVSFEPGASIPYAETHV-M--EHGLYVLEGKGVYRLNN----NWV--PVEAGDYIWMGAY 236 (264)
T ss_pred EEeeCcccc----CcceEEEEEEecCCcccchhhhhh-h--hcceEEEecceEEeecC----ceE--EeecccEEEeecc
Confidence 566666554 23688999999999853 3444 1 12379999998665321 122 6999999999999
Q ss_pred cEEEEEcCCCC-EEEEEEeC
Q 020545 254 FVVAIIAGPEG-IECFSITT 272 (325)
Q Consensus 254 ~~h~~~~g~~~-~~~~~~~~ 272 (325)
.+-+..++..+ +.++--.+
T Consensus 237 cpQacyagG~g~frYLlyKD 256 (264)
T COG3257 237 CPQACYAGGRGAFRYLLYKD 256 (264)
T ss_pred ChhhhccCCCCceEEEEEec
Confidence 99888886554 66654443
No 113
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=93.10 E-value=0.59 Score=42.05 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=43.1
Q ss_pred eeeccccCCCCeEEEEEeCCeEEEEEEcCCCC------C------------------------CCcceEEEEeeCCcEEE
Q 020545 9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQ------K------------------------HSQEEIVLGLRKGDVIP 58 (325)
Q Consensus 9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~------~------------------------~~~~~~~~~l~~GDv~~ 58 (325)
+..-.|+-..+-+..++.|+ =++.++.|+.. . ...+-....|++||+++
T Consensus 142 s~t~lH~D~~~n~~~~i~G~-K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~Lf 220 (251)
T PF13621_consen 142 SFTPLHYDPSHNLLAQIRGR-KRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDVLF 220 (251)
T ss_dssp EEEEEEE-SSEEEEEEEESE-EEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-EEE
T ss_pred ceeeeeECchhhhhhccCCC-EEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeEEE
Confidence 34344443467899999999 99999988731 0 01234567999999999
Q ss_pred eCCCCeEEEEecCCCC
Q 020545 59 VPLGSASWWYNNGSSD 74 (325)
Q Consensus 59 vP~G~~~~~~N~g~~~ 74 (325)
||+|.-|+..|..+++
T Consensus 221 iP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 221 IPPGWWHQVENLSDDD 236 (251)
T ss_dssp E-TT-EEEEEESTTSS
T ss_pred ECCCCeEEEEEcCCCC
Confidence 9999999999994343
No 114
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=92.71 E-value=1 Score=44.86 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=52.2
Q ss_pred CCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545 184 NFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262 (325)
Q Consensus 184 ~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~ 262 (325)
.-|.++. |+++.....+. +| -.--+|.++++++|+.+|++++.--. | .+ ++++||+.|||+|..+...-.+
T Consensus 125 gD~~~~~-G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L--~v~pgei~VIPRG~~frv~l~~ 196 (438)
T PRK05341 125 GDAEAQA-GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATEL--G--VL--DVEPGEIAVIPRGVKFRVELPD 196 (438)
T ss_pred CCccccc-ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--c--ce--EecCCCEEEEcCccEEEEecCC
Confidence 3344432 55555544444 56 66678899999999999999987554 3 23 4889999999999998765333
Q ss_pred CCEE
Q 020545 263 EGIE 266 (325)
Q Consensus 263 ~~~~ 266 (325)
..+.
T Consensus 197 gp~r 200 (438)
T PRK05341 197 GPAR 200 (438)
T ss_pred CCee
Confidence 3333
No 115
>PLN02658 homogentisate 1,2-dioxygenase
Probab=92.33 E-value=1.1 Score=44.52 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=49.9
Q ss_pred CCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545 183 SNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII 259 (325)
Q Consensus 183 ~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~ 259 (325)
..-|.++. |+++.....+. +| ..--+|.+.++++|+.+|++++.--. |. + .+++||+.|||+|..+...
T Consensus 117 ngD~~~~~-G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~ 186 (435)
T PLN02658 117 AGSPFLRH-GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTEL--GK--L--QVSPGEIVVIPRGFRFAVD 186 (435)
T ss_pred CCCccccc-CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEec--cc--e--EecCCCEEEecCccEEEEe
Confidence 33444443 55555444444 56 55578999999999999999987554 32 3 4899999999999998754
No 116
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=0.083 Score=52.59 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCcc--------cccc--cceEEEEEecCCC--ccCCeecCCCCEEEEEEeCcEEEEEEeCCC------
Q 020545 173 KAGMVTSFTGSNFPF--------LEQV--GLSCTILKLDANA--MLSPTYTADSVQVFYVVKGSGKAQIVGLNA------ 234 (325)
Q Consensus 173 ~gG~~~~~~~~~~p~--------L~~~--gis~~~v~l~pg~--~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g------ 234 (325)
+|-+|+.++++.|-. |++. -+.-+-+.|.|-| =++||| -+-...+.=++|+=+..+..|.-
T Consensus 286 ~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHy-DdIeaFvlQvEGrK~Wrly~P~~~~eel~ 364 (629)
T KOG3706|consen 286 KGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHY-DDIEAFVLQVEGRKHWRLYHPTVPLEELA 364 (629)
T ss_pred cCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCch-hhhhhhhheeccceeeEeecCCCcHhhhh
Confidence 466777787776521 2221 1234557777744 579999 45666666778999999988852
Q ss_pred -------------ceEEeEEecCccEEEECCccEEEE
Q 020545 235 -------------KLVLDSEVEAGQLLVVPRCFVVAI 258 (325)
Q Consensus 235 -------------~~~~~~~l~~Gdv~vvP~G~~h~~ 258 (325)
+-+++.-|++||++|+|+|++|--
T Consensus 365 l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 365 LVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQA 401 (629)
T ss_pred hccCCCCChhHhCCchHHhhcCCCcEEEecCcceeec
Confidence 225566899999999999999974
No 117
>PF12852 Cupin_6: Cupin
Probab=91.87 E-value=0.69 Score=40.32 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=33.7
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
...+-+|++|++.+.+=.. + ..+ .|++||++++|+|.+|..-.
T Consensus 35 ~~~fh~V~~G~~~l~~~~~-~-~~~--~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGG-G-EPI--RLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred ceEEEEEECCeEEEEEcCC-C-CeE--EecCCCEEEEcCCCCeEeCC
Confidence 4678899999999994431 2 233 59999999999999999744
No 118
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=91.78 E-value=0.4 Score=37.91 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.2
Q ss_pred EEEEeeCCcEEEeCCCCeEEEEecCCC
Q 020545 47 IVLGLRKGDVIPVPLGSASWWYNNGSS 73 (325)
Q Consensus 47 ~~~~l~~GDv~~vP~G~~~~~~N~g~~ 73 (325)
....-++||.+++|+|..|+..|.|+.
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccceECCCCEEEECCCceEEEEeCCce
Confidence 356889999999999999999999974
No 119
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=91.75 E-value=0.71 Score=44.23 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=36.2
Q ss_pred eeccccCCCCeEEEEEeCCeEEEEEEcCCCC----------CC---CcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545 10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQ----------KH---SQEEIVLGLRKGDVIPVPLGSASWWYNNG 71 (325)
Q Consensus 10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~----------~~---~~~~~~~~l~~GDv~~vP~G~~~~~~N~g 71 (325)
=+-||+-+.+-+++=+.|+ =...+-.+... +. ........|++||++|||+|..|+-...+
T Consensus 127 g~~~H~D~~dvfvlQ~~G~-K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 127 GFGPHYDDHDVFVLQLEGR-KRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp ESECEE-SSEEEEEEEES--EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred CccCEECCcccEEEECCce-eEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 3556665566666677887 77777653210 00 01233578999999999999999999988
No 120
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=91.64 E-value=0.95 Score=35.55 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=38.1
Q ss_pred EEecCCCccCCeecCCCC-EEEEEE---eCcEEEEEEeCCCc-----------------eEEeEEecCccEEEECCccEE
Q 020545 198 LKLDANAMLSPTYTADSV-QVFYVV---KGSGKAQIVGLNAK-----------------LVLDSEVEAGQLLVVPRCFVV 256 (325)
Q Consensus 198 v~l~pg~~~~Ph~h~~A~-ei~yV~---~G~~~~~vv~p~g~-----------------~~~~~~l~~Gdv~vvP~G~~h 256 (325)
...++|+...+|.|+++. .-+|.+ ++.+.+.+.++.+. ..+.-+.++||++++|.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 356789999999999974 334444 24566777776431 123346899999999999999
Q ss_pred EEEc--CCCCEEEEEE
Q 020545 257 AIIA--GPEGIECFSI 270 (325)
Q Consensus 257 ~~~~--g~~~~~~~~~ 270 (325)
.... +++.=..++|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 8433 4444344443
No 121
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=90.44 E-value=1.9 Score=34.14 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=45.7
Q ss_pred EEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545 196 TILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT 271 (325)
Q Consensus 196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~ 271 (325)
..+.|+||+-..-...+.-.-++||++|++.+. +.. ..+.+|+++++..|-.....+++++++++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence 357888988766555556678999999997552 322 35889999999977776666666777766554
No 122
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=89.87 E-value=1.6 Score=43.27 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=49.9
Q ss_pred CCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545 183 SNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII 259 (325)
Q Consensus 183 ~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~ 259 (325)
..-|.++ .|+++.....+. +| -.--+|.+.++++|+.+|++++.--. |. + .+++||+.|||+|..+...
T Consensus 118 ngD~~~~-~G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~ 187 (429)
T TIGR01015 118 AGDATSR-TGLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEF--GR--L--LVEPNEICVIPRGVRFRVT 187 (429)
T ss_pred CCChhhc-cCceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEec--cc--e--EecCCCEEEecCccEEEEe
Confidence 3334443 255555544444 56 66678999999999999999887544 42 3 4899999999999997754
No 123
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=89.39 E-value=2.5 Score=38.33 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=53.2
Q ss_pred ceEEEEEecCCC-ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEE
Q 020545 193 LSCTILKLDANA-MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECF 268 (325)
Q Consensus 193 is~~~v~l~pg~-~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~ 268 (325)
.+=..+++.|+| --.|---++|....||++|+..+.+- |+ + +.|++|+-.++|+|..|...| ..++..+.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~---G~-t--h~l~eggyaylPpgs~~~~~N~~~~~~rfh 132 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE---GK-T--HALREGGYAYLPPGSGWTLRNAQKEDSRFH 132 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc---Ce-E--EEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence 344568898866 77888778999999999999887754 32 2 359999999999999998765 44554433
No 124
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.08 E-value=1.7 Score=42.09 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=50.9
Q ss_pred cceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545 192 GLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI 270 (325)
Q Consensus 192 gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~ 270 (325)
..++-.+++..|.- ..|.- +...|..|++|+|++.--. +.. ..+++|||++||+.+.....+.++.+..+..
T Consensus 332 eF~v~~~~v~~g~~~~~~~~--~~~SIllv~~G~g~l~~~t--~~~---~~v~rG~V~fI~a~~~i~~~~~sd~~~~yrA 404 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGV--DGPSILLVLKGSGILKTDT--DSK---ILVNRGDVLFIPANHPIHLSSSSDPFLGYRA 404 (411)
T ss_pred ceeEEEeecCCCceEEeecC--CCceEEEEEecceEEecCC--CCc---eeeccCcEEEEcCCCCceeeccCcceeeeec
Confidence 35677777777654 44444 6889999999999987543 222 2489999999999998765555665554433
No 125
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=88.17 E-value=1.9 Score=38.69 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=47.9
Q ss_pred EEEEEecCCCccCCeecCCC--CEEEEEE--eCcEEEEEEeCCCc-----------------eEEeEEecCccEEEECCc
Q 020545 195 CTILKLDANAMLSPTYTADS--VQVFYVV--KGSGKAQIVGLNAK-----------------LVLDSEVEAGQLLVVPRC 253 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A--~ei~yV~--~G~~~~~vv~p~g~-----------------~~~~~~l~~Gdv~vvP~G 253 (325)
+=.+.+.+|+...+|.||++ +-+.||. .+.+-..+.+|... ....-.-++||++++|.-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 33456678999999999997 3455555 34455555555321 011124589999999999
Q ss_pred cEEEEE-c-CCCCEEEEEE
Q 020545 254 FVVAII-A-GPEGIECFSI 270 (325)
Q Consensus 254 ~~h~~~-~-g~~~~~~~~~ 270 (325)
+.|... + +++.-..++|
T Consensus 178 L~H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 178 LRHEVPPNESEEERISVSF 196 (201)
T ss_pred CceecCCCCCCCCEEEEEE
Confidence 999843 2 4444444444
No 126
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=0.3 Score=48.80 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=41.3
Q ss_pred eccccCCCCeEEEEEeCCeEEEEEEcCCCCC-------C------Cc--ceEEEEeeCCcEEEeCCCCeEE
Q 020545 11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQK-------H------SQ--EEIVLGLRKGDVIPVPLGSASW 66 (325)
Q Consensus 11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~-------~------~~--~~~~~~l~~GDv~~vP~G~~~~ 66 (325)
|.|||-+-...++=++|+ -.+-+-.|..+. + +. -...+.|++||++|||+|.+|=
T Consensus 331 faPHyDdIeaFvlQvEGr-K~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQ 400 (629)
T KOG3706|consen 331 FAPHYDDIEAFVLQVEGR-KHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQ 400 (629)
T ss_pred CCCchhhhhhhhheeccc-eeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceee
Confidence 678888888888889999 888887776421 1 11 1113579999999999999993
No 127
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=84.67 E-value=3.2 Score=38.91 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=52.4
Q ss_pred CCCccCCeec-CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecC-ccEEEECCccEEEEEcCCCCEE-EEEEe
Q 020545 202 ANAMLSPTYT-ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEA-GQLLVVPRCFVVAIIAGPEGIE-CFSIT 271 (325)
Q Consensus 202 pg~~~~Ph~h-~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~-Gdv~vvP~G~~h~~~~g~~~~~-~~~~~ 271 (325)
|++++.||-| +...+..-|++|+..+-+.+.+|...-...+.+ ++.-+||.+..|.....++++. ++.|+
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy 92 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFY 92 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEE
Confidence 6778899988 567888999999999999999886554455655 4565799999999777655543 33444
No 128
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=83.84 E-value=2.1 Score=42.24 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=37.9
Q ss_pred EecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCH
Q 020545 241 EVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNE 304 (325)
Q Consensus 241 ~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~ 304 (325)
.|++||++++|+|.+|....|. .+++-+ +|+|=.+ +|.+ =+.++-+-+...++.+.
T Consensus 240 ~l~pGeaifipAg~~HAyl~G~-~iEima--~SDnv~R---aGlT--~K~idv~~ll~~l~f~~ 295 (389)
T PRK15131 240 KLNPGEAMFLFAETPHAYLQGV-ALEVMA--NSDNVLR---AGLT--PKYIDIPELVANVKFEA 295 (389)
T ss_pred EeCCCCEEEeCCCCCeEEcCCe-EEEEEe--cCCcEEe---cCCC--CCcccHHHHHhhcCCCC
Confidence 6999999999999999987776 566443 4455333 4433 24566666666666543
No 129
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=83.32 E-value=3.3 Score=33.28 Aligned_cols=61 Identities=13% Similarity=-0.007 Sum_probs=40.6
Q ss_pred eeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCC-CCEEEEEE
Q 020545 10 IVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGS-SDVVIVFV 80 (325)
Q Consensus 10 ~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~-~~l~~~~~ 80 (325)
-+-+| |.+-+-+.||++|+ . .=-+.. .. ...|++|||-++-| |+.|--.|..+ .+++.+-+
T Consensus 41 gf~~HPH~g~eivTyv~~G~-~--~H~Ds~------G~-~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 41 GFPMHPHRGFEIVTYVLEGE-L--RHRDSL------GN-RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp EEEEEEECSEEEEEEEEESE-E--EEEETT------SE-EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCcCCCCceEEEEEecCE-E--EEECCC------CC-eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 34555 77788999999998 2 222333 23 36799999999987 56787888877 57776643
No 130
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=83.19 E-value=3.6 Score=30.17 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=35.8
Q ss_pred ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEE
Q 020545 6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVI 57 (325)
Q Consensus 6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~ 57 (325)
.++..+....-..+.++||++|. ..+...+.++ .......+.+||++
T Consensus 5 ~~g~~i~~~g~~~~~~~~i~~G~-v~~~~~~~~~----~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 5 KKGEVIYRQGDPCDHIYIILSGE-VKVSSINEDG----KEQIIFFLGPGDIF 51 (91)
T ss_dssp STTEEEEETTSBESEEEEEEESE-EEEEEETTTS----EEEEEEEEETTEEE
T ss_pred CCCCEEEeCCCcCCEEEEEEECc-eEEEeceecc----eeeeecceeeeccc
Confidence 35566666666689999999999 8888888775 22336788999987
No 131
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=82.42 E-value=9.9 Score=33.31 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=42.9
Q ss_pred CeEEEEEeCCeEEEEEEcCC--CCCCCcceEEEEeeCCc--EEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545 19 HVIPIIIPCELGVAGMVLPN--DQKHSQEEIVLGLRKGD--VIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG 90 (325)
Q Consensus 19 ~ei~yV~~G~~g~~~~v~~~--~~~~~~~~~~~~l~~GD--v~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~ 90 (325)
.+++.|++|+ ...-+|+-. .+.- .+-....|.+++ .++||+|.+|=++...++ ..++...+ +..+|+
T Consensus 68 ~Klv~~~~G~-i~dV~vDlR~~SpTf-g~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~Y~~t--~~y~p~ 138 (176)
T PF00908_consen 68 AKLVRCLRGE-IFDVAVDLRKGSPTF-GKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVLYKVT--NYYDPE 138 (176)
T ss_dssp EEEEEEEESE-EEEEEEE-BTTSTTT-T-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEEEEES--S---GG
T ss_pred CcEEEEecCe-EEEEEEECCCCCCCC-CEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEEEecC--CccCcc
Confidence 5899999999 999999832 1110 133356787776 799999999999999766 44444332 344443
No 132
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=81.98 E-value=22 Score=30.99 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=52.7
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc----e-E--EeEEecCccEEEECCccEEEE-EcC-CC
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK----L-V--LDSEVEAGQLLVVPRCFVVAI-IAG-PE 263 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~----~-~--~~~~l~~Gdv~vvP~G~~h~~-~~g-~~ 263 (325)
+.+..+.-.||--..+|=|..+..++.|++|..+-+....... . . ....+..|.+++.+.+.+|-. +++ ++
T Consensus 75 ~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~ 154 (175)
T PF05995_consen 75 FELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDE 154 (175)
T ss_dssp -EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS
T ss_pred eEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCC
Confidence 4666788999999999999999999999999998888775433 1 1 112467888888899999987 555 56
Q ss_pred CEEEEEE
Q 020545 264 GIECFSI 270 (325)
Q Consensus 264 ~~~~~~~ 270 (325)
.++-+=+
T Consensus 155 ~avSLHv 161 (175)
T PF05995_consen 155 PAVSLHV 161 (175)
T ss_dssp -EEEEEE
T ss_pred CEEEEEE
Confidence 5554433
No 133
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=80.97 E-value=3 Score=40.58 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=52.0
Q ss_pred CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcE--EEEEEeCC--C--------------ceEEeEEecCcc
Q 020545 185 FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSG--KAQIVGLN--A--------------KLVLDSEVEAGQ 246 (325)
Q Consensus 185 ~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~--~~~vv~p~--g--------------~~~~~~~l~~Gd 246 (325)
+|.-+.-++-+. ...+||-.-|||-+ -=+|+++|.| |.++--+. . ....+..+.+||
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~---YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGD 187 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQ---YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGD 187 (383)
T ss_pred CccccccceEEE--EecCCCccCccccc---hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCc
Confidence 454443343333 67889999999943 2367777665 44443321 0 112346789999
Q ss_pred EEEECCccEEEEEcCCCCEEEEEEeCCC
Q 020545 247 LLVVPRCFVVAIIAGPEGIECFSITTST 274 (325)
Q Consensus 247 v~vvP~G~~h~~~~g~~~~~~~~~~~s~ 274 (325)
|.|||+|++|+=++-++-+.+-.-+...
T Consensus 188 iLYiPp~~~H~gvae~dc~tySvG~r~P 215 (383)
T COG2850 188 ILYIPPGFPHYGVAEDDCMTYSVGFRAP 215 (383)
T ss_pred eeecCCCCCcCCcccccccceeeeccCC
Confidence 9999999999966664444443333333
No 134
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=80.62 E-value=3.1 Score=40.40 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV 78 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~ 78 (325)
+.+.|..|++|+ |++.. +. .....+++|||++||+-+.-.+... ++++..+
T Consensus 352 ~~~SIllv~~G~-g~l~~---~t------~~~~~v~rG~V~fI~a~~~i~~~~~-sd~~~~y 402 (411)
T KOG2757|consen 352 DGPSILLVLKGS-GILKT---DT------DSKILVNRGDVLFIPANHPIHLSSS-SDPFLGY 402 (411)
T ss_pred CCceEEEEEecc-eEEec---CC------CCceeeccCcEEEEcCCCCceeecc-Ccceeee
Confidence 678899999999 88776 31 1136799999999999998865333 3344443
No 135
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=80.46 E-value=5.7 Score=36.86 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=32.8
Q ss_pred CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 212 ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 212 ~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
++...+.|+++|++.+. .. + +.+ .+++||++++|+|.+|....
T Consensus 47 ~~~~~i~~~~~G~~~~~--~~-~-~~~--~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 47 MKGYILNLTIRGQGVIF--NG-G-RAF--VCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred ccceEEEEEEeccEEEe--cC-C-eeE--ecCCCCEEEECCCCceeecc
Confidence 34568899999999874 22 2 233 59999999999999997544
No 136
>PLN02288 mannose-6-phosphate isomerase
Probab=78.69 E-value=5.4 Score=39.47 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=39.4
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~ 255 (325)
..++.++++.++.-.. ..-.+.+.|+.|++|++++. ..++.. ...|++|++++||++..
T Consensus 333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~--~~~~~~--~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLS--TGSSED--GTAAKRGDVFFVPAGTE 391 (394)
T ss_pred ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEe--cCCccc--eEEEeceeEEEEeCCCc
Confidence 4567777787764311 11146789999999999874 222221 23599999999998754
No 137
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.72 E-value=22 Score=34.55 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=45.9
Q ss_pred ccccccceEEEEEecCCCcc-CCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEE
Q 020545 187 FLEQVGLSCTILKLDANAML-SPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAI 258 (325)
Q Consensus 187 ~L~~~gis~~~v~l~pg~~~-~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~ 258 (325)
.+...|+++-.-.++ .+|. .-.+|.+-.++.|+.+|+.++- +.-| ++ ++++||..|||+|..+-.
T Consensus 119 ~~~~~g~~i~~y~~n-~sm~~~~f~NADge~Livpq~G~l~l~--te~G--~l--~v~pgeiavIPRG~~frv 184 (427)
T COG3508 119 ADTQDGVAIHVYKVN-ESMTKRFFRNADGELLIVPQQGELRLK--TELG--VL--EVEPGEIAVIPRGTTFRV 184 (427)
T ss_pred ccccCceEEEEEEcc-ccchhhhhhcCCCCEEEEeecceEEEE--Eeec--eE--EecCCcEEEeeCCceEEE
Confidence 444446655544444 4466 6778888899999999987654 3334 34 499999999999999764
No 138
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=77.62 E-value=18 Score=26.76 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=42.4
Q ss_pred EEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545 220 VVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT 271 (325)
Q Consensus 220 V~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~ 271 (325)
-..|.+-++|.+.+|+.+++..+++||..-++..-+.....|+-+.+-+.+.
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~v~~n 55 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVEVTVN 55 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 3458888999999999999999999999999888888877787766555544
No 139
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=77.46 E-value=7.3 Score=36.29 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=32.5
Q ss_pred CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545 19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 19 ~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
-.+.++++|+ +.+.. ++ + ...+++||++++|++.+|.+.-.++
T Consensus 72 ~~l~~~~~G~-~~~~~---~g-----~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 72 FFTVFQLSGH-AIIEQ---DD-----R--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecce-EEEEE---CC-----e--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 3566778888 77765 43 3 4789999999999999997765444
No 140
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=77.26 E-value=8.1 Score=33.54 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=39.9
Q ss_pred EEEecCCCccCCeecC-CCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545 197 ILKLDANAMLSPTYTA-DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251 (325)
Q Consensus 197 ~v~l~pg~~~~Ph~h~-~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP 251 (325)
.+.+.+|-.+--.=-+ .++.+.+|++|..++...+++|+...-.-+.+||++--+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 4455566543222212 357899999999999999999987777778999988654
No 141
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=76.91 E-value=6.8 Score=37.17 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY 68 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~ 68 (325)
+...+++|++|+ +++.. ++ . ...+++|+.++||++.-.+..
T Consensus 252 ~~~~il~v~~G~-~~i~~---~~------~-~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 252 QSALILSVLEGS-GRIKS---GG------K-TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCcEEEEEEcce-EEEEE---CC------E-EEEEecccEEEEccCCccEEE
Confidence 467899999999 88753 32 2 478999999999999865544
No 142
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=76.84 E-value=26 Score=30.72 Aligned_cols=71 Identities=10% Similarity=-0.020 Sum_probs=47.3
Q ss_pred ceeecccc---CCCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 8 HIIVCLTE---NDLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 8 ~~~~~p~h---~~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
.++=-.|. ..-.+++.|++|+ ...-+|+... .+. .+-....|.+ +-.++||+|.+|=++..+++ ..++..
T Consensus 54 gvlRGlH~q~~~~q~Klv~c~~G~-i~dV~VDlR~-~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 54 GVLRGLHYQRPHPQGKLVRVLRGE-VFDVAVDLRR-NSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred CEEEEEEECCCCCCceEEEEccCC-EEEEEEECCC-CcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 44444553 2358999999999 9999998542 000 1222445665 66999999999999998765 444443
Q ss_pred e
Q 020545 81 G 81 (325)
Q Consensus 81 ~ 81 (325)
.
T Consensus 131 ~ 131 (176)
T TIGR01221 131 C 131 (176)
T ss_pred C
Confidence 3
No 143
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=76.32 E-value=23 Score=27.08 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=43.7
Q ss_pred CCCccCCeecCCCCEE--EEEEeCcEEEEEEeCCCceEEe-EEecCccEEEECCccEEEEEcCCCCEEE
Q 020545 202 ANAMLSPTYTADSVQV--FYVVKGSGKAQIVGLNAKLVLD-SEVEAGQLLVVPRCFVVAIIAGPEGIEC 267 (325)
Q Consensus 202 pg~~~~Ph~h~~A~ei--~yV~~G~~~~~vv~p~g~~~~~-~~l~~Gdv~vvP~G~~h~~~~g~~~~~~ 267 (325)
|.+++..|- +.+-.| +-|++|+.+....+++|...-. --+.+|+..+||....|....-+++++|
T Consensus 12 P~~l~~~H~-TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f 79 (82)
T PF09313_consen 12 PAALLERHN-TKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF 79 (82)
T ss_dssp -GGGGSSBC-CSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred cHHHHhhcC-CCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence 345666675 677666 4688999999999997642111 1368999999999999997765555554
No 144
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=76.25 E-value=21 Score=32.07 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=48.4
Q ss_pred ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE
Q 020545 191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255 (325)
Q Consensus 191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~ 255 (325)
++..+....+.+|-++--.= -.++.+.+|++|.+++...+++|+...-.-+.+||++-...+.+
T Consensus 34 ~~~~~~~~~~~kge~l~~~G-d~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~ 97 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEG-EPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGST 97 (230)
T ss_pred ccceeeeEEECCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCc
Confidence 45567777888887654443 34778999999999999999999876666679999987665544
No 145
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=75.80 E-value=32 Score=28.93 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCcccc------cccceEEEEEecCCCccCCeecCCCCEEEEEEeC-cEEEEEEeCCCce---EEeEEe
Q 020545 173 KAGMVTSFTGSNFPFLE------QVGLSCTILKLDANAMLSPTYTADSVQVFYVVKG-SGKAQIVGLNAKL---VLDSEV 242 (325)
Q Consensus 173 ~gG~~~~~~~~~~p~L~------~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G-~~~~~vv~p~g~~---~~~~~l 242 (325)
+||.+++.......... ..-.+.-.--|.++....-|= .+++|+-+...| ..++-+++|+|+. ++-.++
T Consensus 15 EGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hr-v~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~ 93 (139)
T PF06172_consen 15 EGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHR-VDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDL 93 (139)
T ss_dssp TSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEE-ESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTT
T ss_pred CCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEE-cCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCC
Confidence 57777776655432221 223455566688877764444 289999999998 6899999998852 222234
Q ss_pred cCcc--EEEECCccEEEE-EcCCCCEEEEE
Q 020545 243 EAGQ--LLVVPRCFVVAI-IAGPEGIECFS 269 (325)
Q Consensus 243 ~~Gd--v~vvP~G~~h~~-~~g~~~~~~~~ 269 (325)
.+|+ .++||+|....- .....+.-+++
T Consensus 94 ~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvs 123 (139)
T PF06172_consen 94 AAGERPQVVVPAGTWQAAELEPEGDYSLVS 123 (139)
T ss_dssp CTTEBSEEEE-TTSEEEEEECESSSEEEEE
T ss_pred CCCceEEEEECCCEEEEccccCCCCEEEEE
Confidence 5554 689999998663 23334444443
No 146
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=74.71 E-value=34 Score=30.00 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCCCCCcceE-EEEeeC--CcEEEeCCCCeEEEEecCCCCEEEE
Q 020545 18 LHVIPIIIPCELGVAGMVLPNDQKHSQEEI-VLGLRK--GDVIPVPLGSASWWYNNGSSDVVIV 78 (325)
Q Consensus 18 a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~-~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~ 78 (325)
-.++..|++|+ ...-+|+-...+-.-.+. ...+.. .-++.||+|.+|=++|.+++...++
T Consensus 67 q~klv~~v~G~-v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 67 QGKLVRVVSGK-VFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCeEEEEecCe-EEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence 37999999999 999999744200000111 223443 3789999999999999998773333
No 147
>COG1741 Pirin-related protein [General function prediction only]
Probab=73.79 E-value=8.8 Score=36.14 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=48.9
Q ss_pred EEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE--EEEEcC
Q 020545 197 ILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV--VAIIAG 261 (325)
Q Consensus 197 ~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~--h~~~~g 261 (325)
-..+.||.-+.||=|.+=.-+.||++|+.+-. |+.|++. .+++|||-..=+|.. |.+.+-
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn~~---~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGNKG---VIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCcee---eecccceeEEcCCCceeecccCC
Confidence 45688999999999999999999999996555 5556543 489999999999986 667764
No 148
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=72.42 E-value=15 Score=29.53 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=43.8
Q ss_pred CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE--EEEEcCC--CCEEEE
Q 020545 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV--VAIIAGP--EGIECF 268 (325)
Q Consensus 203 g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~--h~~~~g~--~~~~~~ 268 (325)
++-+.+|=|.+-.-+.||++|+.+-. |+.|++. .|++|||-++=+|-. |.+.+.. ..++.+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~~~---~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGNRG---VLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSEEE---EEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCCee---EeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 45568899999999999999976544 7777653 599999999988764 6677643 345544
No 149
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=71.66 E-value=12 Score=27.30 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEE
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLL 248 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~ 248 (325)
.+.+.||++|..++...+.+++......+.+||++
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 78999999999999999999876555678899887
No 150
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=71.63 E-value=8 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=17.5
Q ss_pred EEeEEecCccEEEECCccEEEEEc-CC
Q 020545 237 VLDSEVEAGQLLVVPRCFVVAIIA-GP 262 (325)
Q Consensus 237 ~~~~~l~~Gdv~vvP~G~~h~~~~-g~ 262 (325)
..+..-++||.+++|+|..|+..+ |.
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cccceECCCCEEEECCCceEEEEeCCc
Confidence 344567899999999999999666 54
No 151
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=70.82 E-value=33 Score=29.80 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=41.8
Q ss_pred EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
+....+.+|.++...= -.++.+.+|++|..++...+.+|+...-..+.+||++--
T Consensus 20 ~~~~~~~kg~~l~~~g-~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 20 CHIHKYPAKSTLIHAG-EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred CeEEEeCCCCEEEeCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 4566777777654332 347889999999999998888887666667899999844
No 152
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=70.35 E-value=15 Score=27.49 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=40.1
Q ss_pred EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545 195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP 251 (325)
+....+.+|..+.-.= .....+.++.+|...+...+++|+......+.+||++-.+
T Consensus 17 ~~~~~~~~g~~l~~~~-~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 17 LEERRFPAGEVIIRQG-DPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred ceeeeeCCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 4456677776542221 2357899999999999999888876666778899987443
No 153
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=70.34 E-value=6.7 Score=35.33 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=38.6
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEe
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYN 69 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N 69 (325)
..+|++|=.+|. -.+.+++.+. .+ -..+++||.+.+|+-++|.=+-
T Consensus 52 egeE~FyQ~KGd-MvLKVie~g~-----~r-DivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 52 EGEEVFYQLKGD-MVLKVLEQGK-----HR-DVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CcchhheeecCc-eEEeeeccCc-----ce-eeEEecCcEEEeccCCCCChhh
Confidence 478999999999 9999998874 33 5689999999999999886443
No 154
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=70.14 E-value=24 Score=30.30 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=35.2
Q ss_pred CcccceeeccccCCCC-----eEEEEEe-CCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEE
Q 020545 4 PLYVHIIVCLTENDLH-----VIPIIIP-CELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVI 77 (325)
Q Consensus 4 ~~~~~~~~~p~h~~a~-----ei~yV~~-G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~ 77 (325)
-|.+.+.+.||.-... .+..++. .. +.+.+ + .+ ....++|++|++-....|+..|.|+++-++
T Consensus 86 ~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~-~~~~v---~------~~-~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~ 154 (163)
T PF05118_consen 86 RLPPGTHIKPHRDPTNLRLRLHLPLIVPNPG-CYIRV---G------GE-TRHWREGECWVFDDSFEHEVWNNGDEDRVV 154 (163)
T ss_dssp EEECTEEEEEE-SS-TTEEEEEEEEC--STT-EEEEE---T------TE-EEB--CTEEEEE-TTS-EEEEESSSS-EEE
T ss_pred EECCCCEECCeeCCCCcceEEEEEEEcCCCC-eEEEE---C------Ce-EEEeccCcEEEEeCCEEEEEEeCCCCCEEE
Confidence 3567788888853321 2223332 33 33333 2 23 578999999999999999999999874333
No 155
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=70.02 E-value=7.1 Score=37.38 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=26.6
Q ss_pred EEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeee
Q 020545 240 SEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKL 281 (325)
Q Consensus 240 ~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~l 281 (325)
-+|++||++++|+|.+|....| ..+++- -+|+|-.+.++
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~G-~~lEvm--qnSDntyR~yd 198 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLKG-LVLEVM--QNSDNTYRVYD 198 (312)
T ss_pred EecCCCCEEEecCCCceeeccc-eEEEEE--ecCccEEEccc
Confidence 3699999999999999998666 444432 34455333333
No 156
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=67.95 E-value=30 Score=31.01 Aligned_cols=51 Identities=14% Similarity=-0.003 Sum_probs=35.6
Q ss_pred ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCC
Q 020545 8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGS 63 (325)
Q Consensus 8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~ 63 (325)
+.++....-..+.+++|++|. ..+...++++ ......-+.+||++-...+.
T Consensus 46 ge~l~~~Gd~~~~ly~I~~G~-vkl~~~~~~G----~e~i~~~~~~Gd~fG~~~~~ 96 (230)
T PRK09391 46 GEEIYGEGEPADYVYQVESGA-VRTYRLLSDG----RRQIGAFHLPGDVFGLESGS 96 (230)
T ss_pred CCEEECCCCCCCeEEEEEeCE-EEEEEECCCC----cEEEEEEecCCceecccCCC
Confidence 334444444578999999999 9999988876 22334467899998665443
No 157
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=65.14 E-value=43 Score=29.09 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=33.7
Q ss_pred cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEe
Q 020545 7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPV 59 (325)
Q Consensus 7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~v 59 (325)
+...+...--..+.+++|++|. ..+-..+.++ .......+.+||++-.
T Consensus 27 kg~~l~~~g~~~~~~y~V~~G~-v~~~~~~~~g----~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 27 AKSTLIHAGEKAETLYYIVKGS-VAVLIKDEEG----KEMILSYLNQGDFIGE 74 (211)
T ss_pred CCCEEEeCCCCCCeEEEEEeCE-EEEEEECCCC----CEEEEEEcCCCCEEee
Confidence 3444554444578999999999 8887777664 2344567899999844
No 158
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=64.71 E-value=19 Score=26.95 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=32.4
Q ss_pred cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEe
Q 020545 7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPV 59 (325)
Q Consensus 7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~v 59 (325)
++..+.......+.+++|++|. ..+...++++ .......+.+||++-.
T Consensus 24 ~g~~l~~~~~~~~~~~~i~~G~-v~~~~~~~~g----~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 24 AGEVIIRQGDPADSLYIVLSGS-VEVYKLDEDG----REQIVGFLGPGDLFGE 71 (115)
T ss_pred CCCEEEcCCCCCCeEEEEEeCE-EEEEEECCCC----cEEEEEecCCccCcCh
Confidence 3444444444568899999999 8877766554 2344567889998733
No 159
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=64.21 E-value=22 Score=30.82 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=30.2
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEE-EEeeCCcEEEeC
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIV-LGLRKGDVIPVP 60 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~-~~l~~GDv~~vP 60 (325)
.++.+++|++|. .++...++++ ++.+ .-+.+||+|--+
T Consensus 25 ~~~~~y~I~~G~-vr~~~~~~~G-----~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 25 PSDMLYRVRSGL-VRLHTVDDEG-----NALTLRYVRPGEYFGEE 63 (202)
T ss_pred CCCeEEEEEeeE-EEEEEECCCC-----CEEEEEEecCCCeechH
Confidence 468999999999 9999998886 4444 456999998543
No 160
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=63.44 E-value=48 Score=28.38 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=37.7
Q ss_pred eEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC-CC------ceEEeEEecCccEEEECCccEEEEEc-CCCC
Q 020545 194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL-NA------KLVLDSEVEAGQLLVVPRCFVVAIIA-GPEG 264 (325)
Q Consensus 194 s~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p-~g------~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~ 264 (325)
.+....|.||+...||.-+....+ +..+++..| .+ .. ....++|+++++=-.+.|...| |++.
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~l------R~Hl~L~~p~~~~~~~v~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~ 151 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRL------RLHLPLIVPNPGCYIRVGGE--TRHWREGECWVFDDSFEHEVWNNGDED 151 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEE------EEEEEEC--STTEEEEETTE--EEB--CTEEEEE-TTS-EEEEESSSS-
T ss_pred hEEEEEECCCCEECCeeCCCCcce------EEEEEEEcCCCCeEEEECCe--EEEeccCcEEEEeCCEEEEEEeCCCCC
Confidence 577888999999999997654442 233444443 21 11 2368999999999999999655 6655
No 161
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=62.92 E-value=9.3 Score=34.46 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=39.3
Q ss_pred eecCC-CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEE
Q 020545 209 TYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA 257 (325)
Q Consensus 209 h~h~~-A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~ 257 (325)
.||.+ ..||.|-.+|...+-|++.+..+ +-.+++||+|.+|+..+|.
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~g~~r--DivI~qGe~flLParVpHS 94 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQGKHR--DVVIRQGEIFLLPARVPHS 94 (279)
T ss_pred ccccCCcchhheeecCceEEeeeccCcce--eeEEecCcEEEeccCCCCC
Confidence 36665 78999999999999999975433 5568999999999999997
No 162
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=61.85 E-value=44 Score=29.00 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=50.7
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe--------CCCceEEe----EEecCccEEEEC------Ccc
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG--------LNAKLVLD----SEVEAGQLLVVP------RCF 254 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~--------p~g~~~~~----~~l~~Gdv~vvP------~G~ 254 (325)
+++..+++.||-+..||=| .-.-++=|++|-=.-++.. |++++.+. -+|++|||.-|- .|.
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~lSpgdihsv~n~~sdrs~a 151 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVHLSPGDIHSVANTGSDRSGA 151 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEeeCCCCeeeecccCCCccce
Confidence 5899999999999999997 4666777777755544443 22222221 146667766554 234
Q ss_pred EEEEEc--CCCCEEEEEEeCCCCCc
Q 020545 255 VVAIIA--GPEGIECFSITTSTRPA 277 (325)
Q Consensus 255 ~h~~~~--g~~~~~~~~~~~s~~p~ 277 (325)
+|...+ |+++-..+.+....+|.
T Consensus 152 iHvy~a~ig~~~r~~fsi~ge~~Pk 176 (191)
T COG5553 152 IHVYLADIGGTDRQLFSILGENRPK 176 (191)
T ss_pred EEEEecccCCCcceeeeecccCCCC
Confidence 454333 55555555555555553
No 163
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=60.94 E-value=21 Score=26.82 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=38.7
Q ss_pred EEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545 196 TILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251 (325)
Q Consensus 196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP 251 (325)
....+.+|-.+. +-.-.++.+.++.+|..++...+.+|+......+.+||++-..
T Consensus 18 ~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 345566666431 1122467899999999999988877776666788999987443
No 164
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=60.85 E-value=18 Score=32.27 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=40.7
Q ss_pred EEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545 196 TILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251 (325)
Q Consensus 196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP 251 (325)
....+.+|-++...= -....+.+|++|.+++...+.+|+..+-.-+.+||++--.
T Consensus 32 ~~~~~~kge~l~~~G-~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 32 ELFHFLAREYIVQEG-QQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred hheeeCCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 344566666543332 3467899999999999999999877666678999988754
No 165
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=60.61 E-value=21 Score=31.81 Aligned_cols=49 Identities=6% Similarity=-0.094 Sum_probs=35.5
Q ss_pred cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeC
Q 020545 7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVP 60 (325)
Q Consensus 7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP 60 (325)
++.++....-..+.+++|++|. .++..++.++ .......+.+||+|-..
T Consensus 38 kge~l~~~G~~~~~~y~V~~G~-v~v~~~~~~G----~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 38 AREYIVQEGQQPSYLFYLTRGR-AKLYATLANG----KVSLIDFFAAPCFIGEI 86 (226)
T ss_pred CCCEEEcCCCCCceEEEEEeCE-EEEEEECCCC----CEeeeeecCCCCeEEee
Confidence 3444555555678999999999 9999988776 23335578999988643
No 166
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=59.97 E-value=69 Score=26.39 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=32.1
Q ss_pred CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545 19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV 78 (325)
Q Consensus 19 ~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~ 78 (325)
-.+.+.++|. +.+.. ++ . ...+.+||+++++++.++.+.-.++.+...+
T Consensus 56 ~~l~~~~~G~-~~~~~---~g------~-~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l 104 (172)
T PF14525_consen 56 YLLVLPLSGS-ARIEQ---GG------R-EVELAPGDVVLLDPGQPYRLEFSAGCRQLSL 104 (172)
T ss_pred EEEEEEccCC-EEEEE---CC------E-EEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence 3455555666 55444 32 2 5789999999999999988765544443333
No 167
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=59.76 E-value=18 Score=30.90 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
++.+.+|++|.+++...+++|+...-..+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 6678999999999999999987765567899998754
No 168
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=59.70 E-value=4.2 Score=39.60 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEeeCCcEEEeCCCCeEEEEecCC
Q 020545 49 LGLRKGDVIPVPLGSASWWYNNGS 72 (325)
Q Consensus 49 ~~l~~GDv~~vP~G~~~~~~N~g~ 72 (325)
..+.+||++|||+|.+|+=+.-++
T Consensus 181 ~vlepGDiLYiPp~~~H~gvae~d 204 (383)
T COG2850 181 EVLEPGDILYIPPGFPHYGVAEDD 204 (383)
T ss_pred hhcCCCceeecCCCCCcCCccccc
Confidence 368999999999999998776643
No 169
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=57.60 E-value=74 Score=24.92 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=36.8
Q ss_pred ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
+|.-..-..++||++|+ +.+ ++ .. ..+.+|+++++..|....+.+.+ ++++++.+
T Consensus 14 ~~~~~~~~~~iyv~~G~-~~v-----~~-----~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll 68 (104)
T PF05726_consen 14 LPLPPGHNAFIYVLEGS-VEV-----GG-----EE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLL 68 (104)
T ss_dssp EEEETT-EEEEEEEESE-EEE-----TT-----TT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred eecCCCCEEEEEEEECc-EEE-----CC-----Cc--ceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence 33333457899999999 533 22 12 56999999999988888887775 55555544
No 170
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=56.88 E-value=65 Score=27.96 Aligned_cols=66 Identities=11% Similarity=-0.161 Sum_probs=39.9
Q ss_pred cCCCCeEEEEEeCCeEEEEEEcCCCCCC---CcceEEEEeeCCcEEEeCCCCeEEEEecC-CCCEEEEEEe
Q 020545 15 ENDLHVIPIIIPCELGVAGMVLPNDQKH---SQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVG 81 (325)
Q Consensus 15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~---~~~~~~~~l~~GDv~~vP~G~~~~~~N~g-~~~l~~~~~~ 81 (325)
|.++..++.|++|+ -.-..-....... ........+..|.++.++.+.+|-+.|.+ +++++=+=+.
T Consensus 93 H~~s~g~~~vl~G~-l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~~avSLHvY 162 (175)
T PF05995_consen 93 HGGSWGWVKVLSGE-LEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDEPAVSLHVY 162 (175)
T ss_dssp -TTSEEEEEEEESE-EEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS-EEEEEEE
T ss_pred CCCceEEEEEecce-EEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCCCEEEEEEc
Confidence 55678899999999 5555443322100 00111234677888888999999999986 6665554444
No 171
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=55.72 E-value=51 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=41.1
Q ss_pred eEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 194 s~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
......|.||- =++++.+.|++=|+.|...+.+-.... . ..+++|+.|.||++.-+-...
T Consensus 24 ~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e---w-~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 24 KKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE---W-QTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp EEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEE
T ss_pred cceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc---c-EEeCCCCeEEECCCCeEEEEE
Confidence 34455677776 378899999999999999888765432 2 358899999999998866443
No 172
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=55.20 E-value=39 Score=25.24 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=30.1
Q ss_pred eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEe
Q 020545 10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPV 59 (325)
Q Consensus 10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~v 59 (325)
.+.-..-..+.+++|.+|. ..+-..+.++ .......+.+||++-.
T Consensus 27 ~l~~~g~~~~~~y~v~~G~-v~~~~~~~~g----~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 27 VIIRQGDVGDSFYIILSGE-VRVYKVLEDG----REQILGILGPGDFFGE 71 (120)
T ss_pred EEEeCCCcCCcEEEEEeeE-EEEEEECCCC----ceEEEEeecCCceech
Confidence 3333334568899999999 7777665443 2344668899998844
No 173
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=52.64 E-value=50 Score=30.58 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=39.2
Q ss_pred ceEEEEEecCCCc-----cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 193 LSCTILKLDANAM-----LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 193 is~~~v~l~pg~~-----~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
+.+.++.-.+..+ ..-+-+.+.-.++++++|++++.+ +| +.. .+++||++++|.+.+|....
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g-~~~--~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DD-RQV--QLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CC-eEE--EEcCCCEEEEECCCCcEeec
Confidence 4455555444322 123343445568888999888654 23 223 59999999999999986543
No 174
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=52.46 E-value=83 Score=29.67 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=41.9
Q ss_pred ceEEEEEecCCC---ccCCeecCCCCEEEEEEe-CcEEEEEEeCCC----ceEEeEEecCccEEEECCccEEEEEcCCCC
Q 020545 193 LSCTILKLDANA---MLSPTYTADSVQVFYVVK-GSGKAQIVGLNA----KLVLDSEVEAGQLLVVPRCFVVAIIAGPEG 264 (325)
Q Consensus 193 is~~~v~l~pg~---~~~Ph~h~~A~ei~yV~~-G~~~~~vv~p~g----~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~ 264 (325)
+-+....|+||+ -..||-|.+-.|..|..+ ... -.++.-.| .|-+ .++-+|++++|+=.+|.= +|..+
T Consensus 175 LlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~-qrV~h~mG~pdETrh~--~v~n~~aVisP~wsih~g-~gt~~ 250 (276)
T PRK00924 175 LVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPED-ARVFHFMGEPQETRHI--VVHNEQAVISPSWSIHSG-VGTSN 250 (276)
T ss_pred EEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCC-ceEEecCCCccceeeE--EEECCCEEECCCcceecC-cCccc
Confidence 446667779998 578999997777655433 111 11111111 1212 478999999999888873 34444
No 175
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=52.26 E-value=28 Score=29.85 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=28.5
Q ss_pred cCCChhHHhhhcCCCHHHHHHHhccc-------CceeEEEecC
Q 020545 105 GGFSSEFTGRAYNMNENEAKILAKSQ-------TGVLIIKLGQ 140 (325)
Q Consensus 105 ~~f~~~vLa~af~v~~~~~~~l~~~q-------~~~~Iv~~~~ 140 (325)
...+.|-+|+.|+++++.++++.+.. +.|.|+.+..
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~kiltVh~De~G~Ii~V~~ 139 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSGSCLTLYNDEHGHIIDVKE 139 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhCCeEEEEECCCCCEEEeec
Confidence 46899999999999999999998765 3345666555
No 176
>PRK10579 hypothetical protein; Provisional
Probab=52.18 E-value=37 Score=26.72 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=44.3
Q ss_pred EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545 195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII 259 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~ 259 (325)
.....|.||- -++.+.+.|++=|+.|+.++.+-.... ...+++|+-|-||++.-+-..
T Consensus 25 kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~e----w~~~~aG~sF~VpanssF~l~ 82 (94)
T PRK10579 25 ASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATD----WQVYEAGEVFNVPGHSEFHLQ 82 (94)
T ss_pred eEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCcc----cEEeCCCCEEEECCCCeEEEE
Confidence 3344566765 478899999999999999888766543 236889999999999876543
No 177
>PRK10579 hypothetical protein; Provisional
Probab=52.01 E-value=54 Score=25.78 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=39.0
Q ss_pred eecccc----CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545 10 IVCLTE----NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN 70 (325)
Q Consensus 10 ~~~p~h----~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~ 70 (325)
+++|-. ..+.|+.=|+.|+ ..+.+ |+. .+ -...++|+-|-||+.+-+-+.-.
T Consensus 29 Vm~pGey~F~T~~~E~MeivsG~-l~V~L--pg~-----~e-w~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 29 VMAEGEYTFSTAEPEEMTVISGA-LNVLL--PGA-----TD-WQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred EEeeeEEEEcCCCcEEEEEEeeE-EEEEC--CCC-----cc-cEEeCCCCEEEECCCCeEEEEEC
Confidence 455552 3578999999999 77777 342 34 47899999999999998877554
No 178
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=51.92 E-value=1.5e+02 Score=25.35 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=41.5
Q ss_pred EEEEEecCCCccCCeecCC-CCEEEEEEeC-cEEEEEEeCCCceE--EeEEecCccE--EEECCccEE
Q 020545 195 CTILKLDANAMLSPTYTAD-SVQVFYVVKG-SGKAQIVGLNAKLV--LDSEVEAGQL--LVVPRCFVV 256 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~-A~ei~yV~~G-~~~~~vv~p~g~~~--~~~~l~~Gdv--~vvP~G~~h 256 (325)
+-.--|++.. .-|||-. |+||-+...| ...+-++..++-.. +-.+++.|++ ++||+|...
T Consensus 46 ~IYyLLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~ 111 (162)
T COG3542 46 AIYYLLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSEDGGAESFTLGPDLEKGERPQYVVPAGTWW 111 (162)
T ss_pred EEEEEecCCc--cchheecchhheEEEecCCceEEEEEeCCCeEEEEecccccCCceeEEEEeCCcEE
Confidence 3345577776 4589987 9999988887 57888887433222 2346788876 699999553
No 179
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=51.34 E-value=41 Score=26.04 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=33.1
Q ss_pred cCCCccCCeecCCCCEEEEEEe-CcEEEEEEeCCCceEEeEEecCccEEEECCccEEE
Q 020545 201 DANAMLSPTYTADSVQVFYVVK-GSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA 257 (325)
Q Consensus 201 ~pg~~~~Ph~h~~A~ei~yV~~-G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~ 257 (325)
..+|+.+|.=.........|+. |.|+.. .+|.. ....++.||.+++|.+..--
T Consensus 20 T~~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g~~-~~~~vk~GD~Vl~~~~~g~~ 73 (93)
T PF00166_consen 20 TASGIILPESAKEKPNQGKVVAVGPGRYN---ENGEE-VPMDVKVGDKVLFPKYAGTE 73 (93)
T ss_dssp CTTSCCE-CCSSSSEEEEEEEEE-SEEET---TTSSE-EETSS-TTSEEEEETTTSEE
T ss_pred ecceEEeccccccccceeEEEEcCCcccc---CCCcE-eeeeeeeccEEeccccCceE
Confidence 4578888844333445555655 777666 55543 34579999999999998643
No 180
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=48.35 E-value=55 Score=31.41 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWW 67 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~ 67 (325)
.+..|.+|++|+ |.+.. ++ + +..|++|+.+.||+...-|.
T Consensus 259 ~~~~il~v~eG~-~~l~~---~~------~-~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 259 ESFSILLVLEGE-GTLIG---GG------Q-TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred CCcEEEEEEcCe-EEEec---CC------E-EEEEcCCcEEEEEcCCCcEE
Confidence 467999999999 77665 42 3 58999999999999865554
No 181
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=47.35 E-value=97 Score=29.92 Aligned_cols=98 Identities=7% Similarity=-0.001 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc--------------eEEeE
Q 020545 175 GMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK--------------LVLDS 240 (325)
Q Consensus 175 G~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~--------------~~~~~ 240 (325)
|.-..+|+..--+-+++=-+-.+=.|-|-+...+--|+.+++ .|+..+.++..... +-+..
T Consensus 191 GtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e-----~g~~~de~itwf~~~y~rt~~Pswp~E~kPIEc 265 (407)
T KOG2130|consen 191 GTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDE-----GGKQPDEIITWFSTIYPRTQLPSWPDEYKPIEC 265 (407)
T ss_pred CceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccc-----cCCCCcceechhhhccccccCCCCccccCCcee
Confidence 445555544433333332244555666665555555555554 45666666665421 23345
Q ss_pred EecCccEEEECCccEEEEEcCCCC-EEEEEEeCCCCCc
Q 020545 241 EVEAGQLLVVPRCFVVAIIAGPEG-IECFSITTSTRPA 277 (325)
Q Consensus 241 ~l~~Gdv~vvP~G~~h~~~~g~~~-~~~~~~~~s~~p~ 277 (325)
...+|.+++||.|+.|...|-+.- ++.--+-+..|..
T Consensus 266 ~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 266 LQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred eecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 789999999999999998775442 3322333345543
No 182
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=47.05 E-value=32 Score=35.81 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=27.9
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
+|-=.|.+.+.|.+.|++.+|..++.+.+++||+|-.
T Consensus 418 SHdKTFe~~~~G~v~vvd~~G~vl~eh~Ve~GDIwRm 454 (735)
T PF03971_consen 418 SHDKTFEIPADGTVRVVDESGEVLMEHEVEAGDIWRM 454 (735)
T ss_dssp -GGGEEE-SSSEEEEEEETTS-EEEEEEE-TT-EEEE
T ss_pred CCCcceECCCCcEEEEEeCCCCEEEEeeecCCcchhh
Confidence 4445688999999999999999999999999999843
No 183
>COG1741 Pirin-related protein [General function prediction only]
Probab=46.87 E-value=28 Score=32.83 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=29.3
Q ss_pred CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEE
Q 020545 185 FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKA 227 (325)
Q Consensus 185 ~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~ 227 (325)
.|.-+.. +-+..+.+.+|+-...+ =..-..++||++|+..+
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 3454555 77888899999977766 22346799999996655
No 184
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=46.38 E-value=48 Score=28.24 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=29.2
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEE
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIP 58 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~ 58 (325)
..+.+++|++|. ..+...++++ .......+.+||+|-
T Consensus 10 ~~~~~~~i~~G~-v~~~~~~~~G----~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 10 PAEKVYFLRRGA-VKLSRVYESG----EEITVALLRENSVFG 46 (193)
T ss_pred CCCcEEEEEecE-EEEEEeCCCC----cEeeeEEccCCCEee
Confidence 467899999999 9999988876 233356789999874
No 185
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=45.70 E-value=2.3e+02 Score=25.85 Aligned_cols=69 Identities=6% Similarity=0.080 Sum_probs=41.0
Q ss_pred EEEEecCCCccCCeecCCCCEEEEEEe-CcEEEEEEeCC--Cc---------------eEE----eEEecCccEEEECCc
Q 020545 196 TILKLDANAMLSPTYTADSVQVFYVVK-GSGKAQIVGLN--AK---------------LVL----DSEVEAGQLLVVPRC 253 (325)
Q Consensus 196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~-G~~~~~vv~p~--g~---------------~~~----~~~l~~Gdv~vvP~G 253 (325)
..+.+.+|=+...|+|..-.|=+...- |...+++.... |. +.+ .-+|++|+-+-+|+|
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 346678888888999988777555554 46777777753 21 111 126999999999999
Q ss_pred cEEEEEcCCCC
Q 020545 254 FVVAIIAGPEG 264 (325)
Q Consensus 254 ~~h~~~~g~~~ 264 (325)
.-|+..+....
T Consensus 170 ~yH~Fw~e~g~ 180 (225)
T PF07385_consen 170 IYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE-TTS
T ss_pred CeeeEEecCCC
Confidence 99998774444
No 186
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=45.47 E-value=45 Score=29.62 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=38.8
Q ss_pred EEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545 198 LKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251 (325)
Q Consensus 198 v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP 251 (325)
..+.+|-++-..= -.+..+.+|.+|..++-..+++|+...-.-+.+||++-.+
T Consensus 40 ~~~~kge~l~~~G-d~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~ 92 (235)
T PRK11161 40 KPIQKGQTLFKAG-DELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD 92 (235)
T ss_pred eeecCCCEeECCC-CCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccc
Confidence 3566665543333 3477899999999999999998877665567899998543
No 187
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=45.00 E-value=72 Score=31.02 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=50.5
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEE
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLV 249 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~v 249 (325)
+-+.|++++.+-|++-.-..+..++..++|.--.+-++.|+|+.+--.+|++||-+.
T Consensus 267 ~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 267 AIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVL 323 (344)
T ss_pred EEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 578999999999999998888899999999999999999998755556899999774
No 188
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=44.62 E-value=1.5e+02 Score=23.25 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=35.3
Q ss_pred eecccc----CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545 10 IVCLTE----NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN 70 (325)
Q Consensus 10 ~~~p~h----~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~ 70 (325)
+++|-. ..+.|+.-|++|. ..+.+ |+. .+ -...++|+.|.||+..-+-+.-.
T Consensus 29 Vm~pGeY~F~T~~~E~M~vvsG~-l~V~l--pg~-----~e-w~~~~aGesF~VpanssF~v~v~ 84 (94)
T PF06865_consen 29 VMLPGEYTFGTSAPERMEVVSGE-LEVKL--PGE-----DE-WQTYSAGESFEVPANSSFDVKVK 84 (94)
T ss_dssp EE-SECEEEEESS-EEEEEEESE-EEEEE--TT------SS--EEEETT-EEEE-TTEEEEEEES
T ss_pred EEeeeEEEEcCCCCEEEEEEEeE-EEEEc--CCC-----cc-cEEeCCCCeEEECCCCeEEEEEC
Confidence 455552 2578999999999 87777 342 34 47899999999999998877654
No 189
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=44.04 E-value=2e+02 Score=24.67 Aligned_cols=78 Identities=21% Similarity=0.112 Sum_probs=45.5
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEE----EeeCCcE--EEeCCCCeEE-EEecCCCCEEEEEEeecCCCCCC
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVL----GLRKGDV--IPVPLGSASW-WYNNGSSDVVIVFVGETSRAYVP 89 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~----~l~~GDv--~~vP~G~~~~-~~N~g~~~l~~~~~~~~~~~~~p 89 (325)
.++|+-+...|--+.+.++.++ +..++ .+++|.+ ++||+|.-.- ..-.|. +-.++++.- .|
T Consensus 63 ~a~eiwHf~ag~pl~~~l~~dG------~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~-~~tLVgCtV-----aP 130 (162)
T COG3542 63 TADEIWHFYAGAPLELHLSEDG------GAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGE-DYTLVGCTV-----AP 130 (162)
T ss_pred chhheEEEecCCceEEEEEeCC------CeEEEEecccccCCceeEEEEeCCcEEEEEEecCC-CceEEEEEe-----cC
Confidence 3888888888854888888744 23233 6778876 6899994321 111232 333443321 36
Q ss_pred Cc-ceeeeeccccccccC
Q 020545 90 GE-FSYFLLTGAQGILGG 106 (325)
Q Consensus 90 ~~-~~~f~laG~~s~l~~ 106 (325)
|. |+.|-|+-..++|..
T Consensus 131 GFdF~~Fela~~~dlL~~ 148 (162)
T COG3542 131 GFDFEDFELAEPEDLLKW 148 (162)
T ss_pred CccchhccccCchhhhhc
Confidence 65 777777755455543
No 190
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=42.49 E-value=64 Score=24.97 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=31.6
Q ss_pred eccc-cCCC--CeEEEEEe--CCeEEEEEEcCCCC-------------CCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545 11 VCLT-ENDL--HVIPIIIP--CELGVAGMVLPNDQ-------------KHSQEEIVLGLRKGDVIPVPLGSASWWYNNG 71 (325)
Q Consensus 11 ~~p~-h~~a--~ei~yV~~--G~~g~~~~v~~~~~-------------~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g 71 (325)
.-+| |.++ +-++||-- +. |.+.+.++... .........+.++||++++|+-+.|+..-..
T Consensus 13 ~~~H~H~~s~~SgVyYv~~p~~~-~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~v~p~~ 90 (101)
T PF13759_consen 13 NEPHNHPNSWLSGVYYVQVPEGS-GPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHGVPPNN 90 (101)
T ss_dssp EEEE--TT-SEEEEEECE--TTS--SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEEE----
T ss_pred cCceECCCcCEEEEEEEECCCCC-CceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEeccCcC
Confidence 3455 5554 46777753 34 55777766431 0123455678999999999999999876543
No 191
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=42.28 E-value=87 Score=30.58 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=51.7
Q ss_pred cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
-+.+.|++++.+-|++-.-..+-.++..++|.--.+-++.|+|..+--.+|++||-+.+
T Consensus 276 ~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 276 TAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLV 334 (354)
T ss_pred EEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEE
Confidence 35789999999999999988899999999999999999999997655568999998743
No 192
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=41.48 E-value=49 Score=28.17 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=42.7
Q ss_pred eEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCcc
Q 020545 194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCF 254 (325)
Q Consensus 194 s~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~ 254 (325)
.+....+.+|....-.= -.+..+.+|++|..++....++|+...-..+.+||+|-...-+
T Consensus 22 ~~~~~~~~~g~~l~~~g-~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 22 KLEVRKLPKGEVLFTEG-EEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL 81 (214)
T ss_pred hceeEeeCCCCEEEcCC-CcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence 44455556664333222 2366689999999999999999876666689999999877544
No 193
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=40.80 E-value=80 Score=22.68 Aligned_cols=44 Identities=9% Similarity=-0.109 Sum_probs=33.3
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEe
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYN 69 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N 69 (325)
.+....-|.+|+ ..++.-. + .. -+-|++||.+.+++|.-.|+..
T Consensus 15 ~~~~~l~v~~G~-vWlT~~g-~-----~~--D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 15 AAGQRLRVESGR-VWLTREG-D-----PD--DYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred CCCcEEEEcccc-EEEECCC-C-----CC--CEEECCCCEEEeCCCCEEEEEe
Confidence 345558899999 8887722 1 12 3679999999999999998865
No 194
>PRK04043 tolB translocation protein TolB; Provisional
Probab=40.40 E-value=2e+02 Score=28.54 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCeecCCCCEEEEEEe--CcEEEEEEeCCCceEEeEEecCccE
Q 020545 207 SPTYTADSVQVFYVVK--GSGKAQIVGLNAKLVLDSEVEAGQL 247 (325)
Q Consensus 207 ~Ph~h~~A~ei~yV~~--G~~~~~vv~p~g~~~~~~~l~~Gdv 247 (325)
.|.|.||...|+|... |+..+.+++-+|+....-...+||+
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKI 414 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCcc
Confidence 4999999999999875 6778889998886544434466764
No 195
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=39.44 E-value=1.4e+02 Score=25.60 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=41.2
Q ss_pred cCCeecCCCCEEEEEEeCcE-EEEEEeCCCc-----eEEeEEecCccEEEECCccEEE-EEcCCCCEEEEEEeC
Q 020545 206 LSPTYTADSVQVFYVVKGSG-KAQIVGLNAK-----LVLDSEVEAGQLLVVPRCFVVA-IIAGPEGIECFSITT 272 (325)
Q Consensus 206 ~~Ph~h~~A~ei~yV~~G~~-~~~vv~p~g~-----~~~~~~l~~Gdv~vvP~G~~h~-~~~g~~~~~~~~~~~ 272 (325)
...-.||.+++...-+.|+. .+-+|.+.+. .+-...+..|+-+.+=+|.+|. ...-++...|+.+..
T Consensus 72 ~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~ 145 (165)
T PF04115_consen 72 SMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDR 145 (165)
T ss_dssp EEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEE
T ss_pred ceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeC
Confidence 35568999999999999998 7888877653 1223468899999999999998 555556666665543
No 196
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=38.87 E-value=72 Score=27.08 Aligned_cols=40 Identities=18% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL 61 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~ 61 (325)
.++.+++|++|. ..+....+++ .......+.+||+|-..+
T Consensus 40 ~~~~~y~v~~G~-v~~~~~~~~G----~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 40 EADSLYIILSGI-VKLYANTEDG----REIILGFLGPGDFFGELA 79 (214)
T ss_pred cCceEEEEEEeE-EEEEEECCCC----cEEEEEEecCCchhhhHH
Confidence 466799999999 9999988875 234345699999996654
No 197
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=38.64 E-value=1.2e+02 Score=27.22 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=41.4
Q ss_pred EEEEecCCCccCCeecCCCCEEEEEEeC--cEEEEEEeCC----------------C-ceEEe----EEecCccEEEECC
Q 020545 196 TILKLDANAMLSPTYTADSVQVFYVVKG--SGKAQIVGLN----------------A-KLVLD----SEVEAGQLLVVPR 252 (325)
Q Consensus 196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G--~~~~~vv~p~----------------g-~~~~~----~~l~~Gdv~vvP~ 252 (325)
..+.+.+|-+...|+|++-.|=+ +-+| +.++...... | +.... -+|++|+-+.+|.
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDi-inrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~P 167 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDI-INRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPP 167 (225)
T ss_pred eeEEeccCCcCcccccccchhhh-hhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCC
Confidence 45667788888889888644422 1222 2222222211 1 11111 2799999999999
Q ss_pred ccEEEEEcCCCC
Q 020545 253 CFVVAIIAGPEG 264 (325)
Q Consensus 253 G~~h~~~~g~~~ 264 (325)
|.-|+.-++..+
T Consensus 168 g~~HsFwae~g~ 179 (225)
T COG3822 168 GLYHSFWAEEGG 179 (225)
T ss_pred CceeeeeecCCc
Confidence 999998886665
No 198
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=38.55 E-value=2.4e+02 Score=23.67 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=42.3
Q ss_pred eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEe----eCCc--EEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGL----RKGD--VIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l----~~GD--v~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
+-.-|..+++|+-+-..|.-..+-++++++ ......| .+|+ .++||+|.-+--.-.+..+..++.+
T Consensus 53 ~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg-----~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc 124 (139)
T PF06172_consen 53 FSAWHRVDSDEIWHFHAGDPLELHLIDPDG-----SYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDYSLVSC 124 (139)
T ss_dssp EEEEEEESSEEEEEEEEES-EEEEEECTTS-----TEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSEEEEEE
T ss_pred CCccEEcCCCEEEEEEcCCCEEEEEEcCCC-----CeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCEEEEEE
Confidence 334455588899888888438899999986 3333444 3443 5899999876664455556656554
No 199
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=38.50 E-value=1.3e+02 Score=23.43 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=34.1
Q ss_pred cCCCccCCeecCCCCEEEEEEe-CcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCE
Q 020545 201 DANAMLSPTYTADSVQVFYVVK-GSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGI 265 (325)
Q Consensus 201 ~pg~~~~Ph~h~~A~ei~yV~~-G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~ 265 (325)
..||+.+|.-.........|+. |.|+.. .+|++ ..-.++.||.+++|.....-...+++..
T Consensus 21 T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~---~~G~~-~~~~vk~GD~Vlf~~~~g~ev~~~~~~y 82 (95)
T PRK00364 21 TAGGIVLPDSAKEKPQEGEVVAVGPGRRL---DNGER-VPLDVKVGDKVLFGKYAGTEVKIDGEEY 82 (95)
T ss_pred ccceEEcCccccCCcceEEEEEECCCeEC---CCCCE-eecccCCCCEEEEcCCCCeEEEECCEEE
Confidence 3466777654333444444443 655432 33432 3346999999999986654333344433
No 200
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=38.49 E-value=1.6e+02 Score=21.61 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=34.6
Q ss_pred EEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEE
Q 020545 23 IIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVI 77 (325)
Q Consensus 23 yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~ 77 (325)
+-..|+ +.+.+.+.++ ...+...+++||.+-++.+-+..+ ..|+-...-
T Consensus 3 l~a~~~-sWv~V~d~dG----~~~~~~~l~~G~~~~~~~~~~~~i-~iGna~~v~ 51 (77)
T PF13464_consen 3 LTATGD-SWVEVTDADG----KVLFSGTLKAGETKTFEGKEPFRI-RIGNAGAVE 51 (77)
T ss_pred EEEeCC-eEEEEEeCCC----cEeeeeeeCCCcEEEEeCCCCEEE-EEeCCCcEE
Confidence 445688 8999987665 466677999999999966666554 666654433
No 201
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=38.37 E-value=88 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=33.4
Q ss_pred cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcce-EEEEeeCCcEEEe
Q 020545 7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEE-IVLGLRKGDVIPV 59 (325)
Q Consensus 7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~-~~~~l~~GDv~~v 59 (325)
++..+...--..+.+++|++|. .++-..+.++ ++ ...-+.+||++-.
T Consensus 44 kge~l~~~Gd~~~~ly~v~~G~-v~~~~~~~~G-----~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 44 KGQTLFKAGDELKSLYAIRSGT-IKSYTITEQG-----DEQITGFHLAGDLVGF 91 (235)
T ss_pred CCCEeECCCCCcceEEEEeece-EEEEEECCCC-----CEEEEEeccCCceecc
Confidence 3444444444578999999999 9998888775 34 3445689999854
No 202
>PLN02868 acyl-CoA thioesterase family protein
Probab=38.30 E-value=76 Score=31.34 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=32.5
Q ss_pred eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEe
Q 020545 10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPV 59 (325)
Q Consensus 10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~v 59 (325)
++.-.--..+.+++|++|+ ..+...+.++ ......+++||+|-.
T Consensus 41 ~I~~~Gd~~~~lyiI~~G~-V~v~~~~~~g-----e~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 41 YVVREGEPGDGLYFIWKGE-AEVSGPAEEE-----SRPEFLLKRYDYFGY 84 (413)
T ss_pred EEEeCCCcCceEEEEEeCE-EEEEEECCCC-----cEEEEEeCCCCEeeh
Confidence 3444444578899999999 8888876654 344678899999973
No 203
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=38.14 E-value=1.5e+02 Score=22.07 Aligned_cols=55 Identities=22% Similarity=0.223 Sum_probs=32.9
Q ss_pred EEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCcc--EEEEEcCCCCEEEEEEe
Q 020545 216 QVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCF--VVAIIAGPEGIECFSIT 271 (325)
Q Consensus 216 ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~--~h~~~~g~~~~~~~~~~ 271 (325)
-.++.++-.|.++.+.|+..+ -+..+++|..+.+|..- ..+......+-+.+.++
T Consensus 21 l~l~~~~~~G~v~~L~Pn~~~-~~~~v~ag~~~~iP~~~~~~~~~v~~P~G~e~i~~i 77 (83)
T PF14326_consen 21 LYLFYIDADGKVTLLFPNRYQ-PDNFVKAGQTYTIPDPGDRFSFTVDPPFGKERIVAI 77 (83)
T ss_pred EEEEEECCCCCEEEEecCccc-cCceEcCCceEEcCCCCCceEEEEcCCCCcEEEEEE
Confidence 444555567888888887422 22468999999999332 23444444454444333
No 204
>PLN02288 mannose-6-phosphate isomerase
Probab=38.04 E-value=21 Score=35.31 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=34.1
Q ss_pred EecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCH
Q 020545 241 EVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNE 304 (325)
Q Consensus 241 ~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~ 304 (325)
+|++||.+++|+|.+|....|+ .+++.+ +|+|=-+ ||-+. +..+.+.|.+..+.+.
T Consensus 254 ~L~PGeaifl~ag~~HAYl~G~-~vE~MA--~SDNVlR---aGLTp--K~~Dv~~L~~~l~f~~ 309 (394)
T PLN02288 254 KLNPGEALYLGANEPHAYLSGE-CIECMA--TSDNVVR---AGLTP--KFRDVQTLCSMLTYKQ 309 (394)
T ss_pred ecCCCCEEEecCCCCceecCCC-eEEeee--cCCceee---ecCCC--ccccHHHHHhhccCcc
Confidence 6999999999999999976554 345443 4455322 22111 2345566666655443
No 205
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=37.98 E-value=86 Score=29.22 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=15.0
Q ss_pred eEEEEeeCCcEEEeCCC
Q 020545 46 EIVLGLRKGDVIPVPLG 62 (325)
Q Consensus 46 ~~~~~l~~GDv~~vP~G 62 (325)
.....++-||++.+|.|
T Consensus 209 d~~~~V~~~d~V~iP~g 225 (261)
T PF04962_consen 209 DEHYVVRNGDAVLIPSG 225 (261)
T ss_dssp EEEEEEETTEEEEESTT
T ss_pred cEEEEEECCCEEEeCCC
Confidence 44678999999999999
No 206
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=37.58 E-value=65 Score=28.65 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=32.1
Q ss_pred cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEE
Q 020545 7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIP 58 (325)
Q Consensus 7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~ 58 (325)
++..+....-..+.+++|++|. ..+.....++ ......+.+||++-
T Consensus 37 ~ge~l~~~g~~~~~~~~v~~G~-v~~~~~~~~~-----~~~i~~~~~g~~~g 82 (236)
T PRK09392 37 PGTMLITEGEPADFLFVVLDGL-VELSASSQDR-----ETTLAILRPVSTFI 82 (236)
T ss_pred CCCEEEeCCCccceEEEEEeCE-EEEEEcCCCc-----eEEEEEeCCCchhh
Confidence 3444444445678999999999 8887765443 44466888999874
No 207
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=36.93 E-value=2.3e+02 Score=23.10 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=27.8
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
.--+.+.++|.++++ .. | +.. .+.+||+++++.+.++....
T Consensus 55 ~~~l~~~~~G~~~~~--~~-g-~~~--~~~pg~~~l~d~~~~~~~~~ 95 (172)
T PF14525_consen 55 HYLLVLPLSGSARIE--QG-G-REV--ELAPGDVVLLDPGQPYRLEF 95 (172)
T ss_pred EEEEEEEccCCEEEE--EC-C-EEE--EEcCCeEEEEcCCCCEEEEE
Confidence 345666666666655 32 3 223 59999999999999977543
No 208
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=36.89 E-value=1.2e+02 Score=21.69 Aligned_cols=56 Identities=25% Similarity=0.114 Sum_probs=39.9
Q ss_pred EecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545 199 KLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA 260 (325)
Q Consensus 199 ~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~ 260 (325)
.|.||..+ .|.+.+...+-|.+|+.=++.-.. .-|.-|++||.+.+++|--.+..+
T Consensus 3 ~L~~g~~~--~lr~~~~~~l~v~~G~vWlT~~g~----~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETL--SLRAAAGQRLRVESGRVWLTREGD----PDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceE--EeEcCCCcEEEEccccEEEECCCC----CCCEEECCCCEEEeCCCCEEEEEe
Confidence 45555544 455666777999999888876332 235569999999999998877654
No 209
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=36.59 E-value=40 Score=22.27 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=19.7
Q ss_pred cCCChhHHhhhcCCCHHHHHHHhcc
Q 020545 105 GGFSSEFTGRAYNMNENEAKILAKS 129 (325)
Q Consensus 105 ~~f~~~vLa~af~v~~~~~~~l~~~ 129 (325)
.|++..-+|+.||++..++-+++..
T Consensus 20 ~G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 20 EGMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp TT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 4799999999999999999998865
No 210
>PLN02868 acyl-CoA thioesterase family protein
Probab=35.13 E-value=75 Score=31.37 Aligned_cols=55 Identities=4% Similarity=-0.032 Sum_probs=38.7
Q ss_pred EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545 195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP 251 (325)
+....+.+|.++--.= -.++.+.+|++|++++...+.+|+. .-..+++||+|-..
T Consensus 31 ~~~~~~~~Ge~I~~~G-d~~~~lyiI~~G~V~v~~~~~~ge~-~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 31 VVPKRYGKGEYVVREG-EPGDGLYFIWKGEAEVSGPAEEESR-PEFLLKRYDYFGYG 85 (413)
T ss_pred ceEEEECCCCEEEeCC-CcCceEEEEEeCEEEEEEECCCCcE-EEEEeCCCCEeehh
Confidence 3445566665543222 3477899999999999998888743 44578999998753
No 211
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=34.37 E-value=33 Score=30.73 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=60.8
Q ss_pred ccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc---------e------EEeEEe-cCcc-EEE
Q 020545 187 FLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK---------L------VLDSEV-EAGQ-LLV 249 (325)
Q Consensus 187 ~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~---------~------~~~~~l-~~Gd-v~v 249 (325)
+.++-.+++....|.+|+...+|=||.=+-+.-|+.|+.++.-.+.-.. + +.+..+ .+++ .+.
T Consensus 38 iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL 117 (200)
T PF07847_consen 38 IYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVL 117 (200)
T ss_pred EEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEE
Confidence 4455577888889999999999999999999999999999998874210 1 111122 2223 344
Q ss_pred ECCc--cEEEEEcCCCCEEEEEEeC
Q 020545 250 VPRC--FVVAIIAGPEGIECFSITT 272 (325)
Q Consensus 250 vP~G--~~h~~~~g~~~~~~~~~~~ 272 (325)
-|+. -.|.+.|.++++-++-++.
T Consensus 118 ~P~~ggNiH~f~a~~~p~AflDIL~ 142 (200)
T PF07847_consen 118 YPTSGGNIHEFTALTGPCAFLDILA 142 (200)
T ss_pred ccCCCCeeEEEEeCCCCeEEEEEcc
Confidence 4554 6788877777777777664
No 212
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=34.35 E-value=2.6e+02 Score=24.16 Aligned_cols=67 Identities=12% Similarity=-0.015 Sum_probs=49.1
Q ss_pred ccCCeecCCCCEEEEEEeCcEEEEEEeCCCc----eEEeEEecCccEEEECCccEEE-EEcCCCCEEEEEEe
Q 020545 205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAK----LVLDSEVEAGQLLVVPRCFVVA-IIAGPEGIECFSIT 271 (325)
Q Consensus 205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~----~~~~~~l~~Gdv~vvP~G~~h~-~~~g~~~~~~~~~~ 271 (325)
+...-.||..++..+-+.|+..+-+|.+.+. ..-......|+-+..=+|.+|. ..+-+....|+.+.
T Consensus 70 ~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vvd 141 (162)
T PRK03606 70 IRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVVD 141 (162)
T ss_pred eeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEEe
Confidence 4455689999999999999999999987643 2222468899999999999997 34434434454444
No 213
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=34.26 E-value=1.5e+02 Score=27.57 Aligned_cols=58 Identities=3% Similarity=-0.216 Sum_probs=38.6
Q ss_pred ceeeccccC--CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCC-cEEEeCCCCeEEEEec
Q 020545 8 HIIVCLTEN--DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKG-DVIPVPLGSASWWYNN 70 (325)
Q Consensus 8 ~~~~~p~h~--~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~G-Dv~~vP~G~~~~~~N~ 70 (325)
.+++-||.+ ...+...|++|+ ..+-+.++++ .......+.+. +.-++|++.-|.+.-.
T Consensus 21 ~~~~~~H~t~~g~~~~~~vl~G~-l~~~~~de~g----~~~~~~~l~~~~~~~~i~p~~wh~v~~~ 81 (287)
T PRK12335 21 EMFQEKHNTKEGTWAKLTVLKGE-LKFYELTEDG----EELSEHIFDAENQPPFIEPQAWHRIEAA 81 (287)
T ss_pred HHHHhccCCCCCcceEEEEEeee-EEEEEECCCC----CeeeEEEEecCCCCceeCCcceEEEEEc
Confidence 456778833 457999999999 5555556654 12223445554 5557999999998876
No 214
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=32.21 E-value=62 Score=21.65 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCccCCeecCCCC--EEEEEEeCcEEEEEEeCC
Q 020545 203 NAMLSPTYTADSV--QVFYVVKGSGKAQIVGLN 233 (325)
Q Consensus 203 g~~~~Ph~h~~A~--ei~yV~~G~~~~~vv~p~ 233 (325)
||++.-++.|... .+....+..+++.++|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 5666667766555 899999999999999974
No 215
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=31.75 E-value=35 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=17.3
Q ss_pred EEecCccEEEECCccE-EE-EEcCCCCE
Q 020545 240 SEVEAGQLLVVPRCFV-VA-IIAGPEGI 265 (325)
Q Consensus 240 ~~l~~Gdv~vvP~G~~-h~-~~~g~~~~ 265 (325)
..+++||++.++++.. || ++.|+..+
T Consensus 5 ~~~~~GD~I~~~r~~y~H~gIYvG~~~V 32 (125)
T PF04970_consen 5 KRLKPGDHIEVPRGLYEHWGIYVGDGEV 32 (125)
T ss_dssp -S--TT-EEEEEETTEEEEEEEEETTEE
T ss_pred cCCCCCCEEEEecCCccEEEEEecCCeE
Confidence 4689999999999875 87 66776643
No 216
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=31.55 E-value=43 Score=34.93 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=30.7
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEE
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLV 249 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~v 249 (325)
+|-=.|-+.+.|.+.|++..|+.++.+.+++||+|-
T Consensus 422 SHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwR 457 (741)
T TIGR00178 422 SHDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWR 457 (741)
T ss_pred CCCcceecCCCceEEEEeCCCCEEEEeeccCCcchh
Confidence 344557788999999999999999999999999984
No 217
>PHA02951 Hypothetical protein; Provisional
Probab=31.34 E-value=1.5e+02 Score=28.42 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEE
Q 020545 213 DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA 257 (325)
Q Consensus 213 ~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~ 257 (325)
.+-..+.|++-+|+.++.-|+.. .+...+++||+++.|+.....
T Consensus 123 ~gFvAtICIKNeGiSgl~Vp~t~-~LK~ni~~GD~IVsRs~rGv~ 166 (337)
T PHA02951 123 AGFTATICLKNEGISGLYIPGTS-VLKINICQGDTIVSRSSRGVQ 166 (337)
T ss_pred cceEEEEEEcCCCeeEEEeCCCc-hheeeeccCcEEEEeccccce
Confidence 46677889999999999999864 457789999999999988755
No 218
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=29.79 E-value=27 Score=38.11 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=49.9
Q ss_pred cccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEE
Q 020545 186 PFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLL 248 (325)
Q Consensus 186 p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~ 248 (325)
|.|..++.++.++.|+||-++--.= -.|+++-||+.|+.|.-.--++|+..+-.++.+||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqg-D~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQG-DSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcC-CccCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 6788889999999999998765554 3489999999999998777666655455678888887
No 219
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.95 E-value=2.1e+02 Score=22.10 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545 18 LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY 68 (325)
Q Consensus 18 a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~ 68 (325)
++|+.-|+.|. ..+-+ |+. .+ -+...+|.+|.||..+-+-++
T Consensus 41 ~~E~Mtvv~Ga-l~v~l--pgs-----~d-Wq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 41 APEEMTVVSGA-LTVLL--PGS-----DD-WQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CceEEEEEeeE-EEEEc--CCC-----cc-cEEecCCceEEcCCCCeEEEE
Confidence 56777777777 54444 332 33 256788888888877766554
No 220
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=28.14 E-value=68 Score=26.96 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=23.3
Q ss_pred cCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545 289 NGFSASVVQLALNVNEEFLKFFKENV 314 (325)
Q Consensus 289 ~~~~~evla~af~v~~~~v~~l~~~~ 314 (325)
..++++-+|++|++++|.+++|++.+
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~~ 113 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKSH 113 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcCC
Confidence 45789999999999999999998875
No 221
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=27.87 E-value=69 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEEeCcEEEEEEeCCC-ceEEeEEecCccEEEECC
Q 020545 216 QVFYVVKGSGKAQIVGLNA-KLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 216 ei~yV~~G~~~~~vv~p~g-~~~~~~~l~~Gdv~vvP~ 252 (325)
.-+||++-.|.+..+.-.- ++. ...+.+||.++||-
T Consensus 167 s~v~VI~pdG~v~~~~~a~Wn~~-~~~l~PG~~I~Vp~ 203 (229)
T PF06251_consen 167 SRVYVIQPDGSVQKVPVAYWNNQ-HQELAPGATIYVPF 203 (229)
T ss_dssp SEEEEE-TTS-EEEEE-STTT---EEE--TT-EEEE-B
T ss_pred ccEEEEeCCCcEEEcceehhccC-CCCCCCCCEEEEcC
Confidence 4589999888887665421 111 24699999999996
No 222
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.83 E-value=28 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
+---.|++.|+.-.++++-+|-.. +..++||.++|=.
T Consensus 52 ~Rf~TYvI~g~~gSg~I~lNGAAA--r~~~~GD~vII~s 88 (111)
T cd06919 52 ARFETYVIPGERGSGVICLNGAAA--RLGQPGDRVIIMA 88 (111)
T ss_pred cEEEEEEEEcCCCCCEEEeCCHHH--hcCCCCCEEEEEE
Confidence 344689999998888888888532 3578999998743
No 223
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=27.79 E-value=36 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=29.0
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
|---.|++.|+.-.++++.+|-.. ...++||.++|=.
T Consensus 52 aRf~TYvI~g~rGSg~I~lNGAAA--rl~~~GD~VII~s 88 (126)
T COG0853 52 ARFSTYVIAGERGSGVICLNGAAA--RLVQVGDLVIIMS 88 (126)
T ss_pred cEEEEEEEEccCCCcEEEechHHH--hhCCCCCEEEEEE
Confidence 455789999999999999988532 3478999998743
No 224
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=27.44 E-value=3e+02 Score=25.65 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=31.2
Q ss_pred eEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCC--------cEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 20 VIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKG--------DVIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 20 ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~G--------Dv~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
..++.+.|+ +.+.+ ++ .+ ...+..- |.++||.|...-+....+ +++..+
T Consensus 49 ~~vv~l~G~-~~v~~---~g-----~~-~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~--ae~~~~ 105 (261)
T PF04962_consen 49 LGVVNLGGK-ATVTV---DG-----EE-FYELGGRESVFDGPPDALYVPRGTKVVIFASTD--AEFAVC 105 (261)
T ss_dssp EEEEEESSS-EEEEE---TT-----EE-EEEE-TTSSGGGS--EEEEE-TT--EEEEESST--EEEEEE
T ss_pred EEEEEeCCE-EEEEe---CC-----ce-EEEecccccccCCCCcEEEeCCCCeEEEEEcCC--CEEEEE
Confidence 445667889 88888 42 23 4556665 999999999998888544 655543
No 225
>PHA02984 hypothetical protein; Provisional
Probab=25.68 E-value=3.9e+02 Score=25.21 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=39.2
Q ss_pred eEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545 20 VIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV 80 (325)
Q Consensus 20 ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~ 80 (325)
..+.+++|+ ..+..-..+ ++.+.++++||.|.+--++-|-+.-. +..+.++-+
T Consensus 95 ~FvlCl~G~-~~I~~~~~~------~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~Vi 147 (286)
T PHA02984 95 MFVLCLNGK-TSIECFNKG------SKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAVI 147 (286)
T ss_pred EEEEEcCCe-EEEEEecCC------ceeeeEEecCceEEEEccceEEEEeC-CCceEEEEE
Confidence 345667999 888887655 45578999999999999999988654 444544433
No 226
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=25.56 E-value=32 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
+---.|++.|+.-.++++-+|-.. +..++||.++|=.
T Consensus 53 ~Rf~TYvI~G~~GSg~I~lNGAAA--rl~~~GD~VII~s 89 (126)
T TIGR00223 53 KRFSTYAIAGKRGSRIICVNGAAA--RCVSVGDIVIIAS 89 (126)
T ss_pred cEEEEEEEEcCCCCCEEEeCCHHH--hcCCCCCEEEEEE
Confidence 334579999998888888888532 3578999998744
No 227
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=25.42 E-value=33 Score=28.43 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=28.2
Q ss_pred CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
+---.|++.|+.-.++++-+|-.. +..++||.++|=.
T Consensus 53 ~Rf~TYvI~g~~GSg~I~lNGAAA--r~~~~GD~vII~a 89 (126)
T PRK05449 53 ARFETYVIAGERGSGVICLNGAAA--RLVQVGDLVIIAA 89 (126)
T ss_pred cEEEEEEEEcCCCCCEEEeCCHHH--hcCCCCCEEEEEE
Confidence 334579999998888999888532 3578999998744
No 228
>PHA02699 hypothetical protein; Provisional
Probab=24.44 E-value=1.6e+02 Score=28.99 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=40.0
Q ss_pred CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCCCCEEEEEEe
Q 020545 19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 19 ~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~~~l~~~~~~ 81 (325)
=...++++-+ |+.++--+++ +-....+++||.+++|+ |+-+.-+=.|+....|+.+.
T Consensus 168 FvAtICIKNe-GiSgI~Vp~T-----~~lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVsL~ 226 (466)
T PHA02699 168 FVAIICIKNE-GMAAIAVNNT-----KFLKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILTLT 226 (466)
T ss_pred eEEEEEEcCC-CeeEEEecCC-----cceeeeeecCCEEEEehhchhhhhhhcCCceEEEEEEEe
Confidence 3566788999 9999988886 44468999999999997 44443333444455555554
No 229
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=2.2e+02 Score=22.66 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=42.9
Q ss_pred EEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcC
Q 020545 226 KAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALN 301 (325)
Q Consensus 226 ~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~ 301 (325)
..+++.|+..+.| -+.||.+. .||.-...++-.|-+..+...| +.|-.|...++++.+.-|.+-+.+
T Consensus 4 ~~~~i~~Gdg~tf---pK~Gqtvt-----~hYtg~L~dG~kfDSs~dr~kP-fkf~IGkgeVIkGwdegv~qmsvG 70 (108)
T KOG0544|consen 4 EKQVISPGDGRTF---PKKGQTVT-----VHYTGTLQDGKKFDSSRDRGKP-FKFKIGKGEVIKGWDEGVAQMSVG 70 (108)
T ss_pred eeEEeeCCCCccc---CCCCCEEE-----EEEEeEecCCcEeecccccCCC-eeEEecCcceeechhhcchhcccc
Confidence 4556666544444 46777763 4664444555555555555667 567779999999998888765544
No 230
>PHA02984 hypothetical protein; Provisional
Probab=24.14 E-value=3.9e+02 Score=25.15 Aligned_cols=53 Identities=6% Similarity=0.107 Sum_probs=38.6
Q ss_pred CCEEEE--EEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545 214 SVQVFY--VVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF 268 (325)
Q Consensus 214 A~ei~y--V~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~ 268 (325)
+.|-.| +++|+.++.....+ +..+..+++||.|.+--+.-|.....+.+++.+
T Consensus 91 snEy~FvlCl~G~~~I~~~~~~--~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~ 145 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNKG--SKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLA 145 (286)
T ss_pred eccEEEEEEcCCeEEEEEecCC--ceeeeEEecCceEEEEccceEEEEeCCCceEEE
Confidence 445444 55677777777654 456678999999999999999987776665544
No 231
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=23.73 E-value=65 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=22.4
Q ss_pred CChhHHhhhcCCCHHHHHHHhcccC
Q 020545 107 FSSEFTGRAYNMNENEAKILAKSQT 131 (325)
Q Consensus 107 f~~~vLa~af~v~~~~~~~l~~~q~ 131 (325)
++.+.||..|+|+.+.|+||+++..
T Consensus 30 ~t~~~Lae~F~vspe~irrILkskw 54 (225)
T PF06413_consen 30 WTVERLAESFKVSPEAIRRILKSKW 54 (225)
T ss_pred cCHHHHHhhCCCCHHHHHHHHhcCC
Confidence 6778999999999999999998763
No 232
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=23.66 E-value=3.2e+02 Score=20.53 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=18.1
Q ss_pred CcEEEEEEeCCCceEEe---------EEecCccEEEE
Q 020545 223 GSGKAQIVGLNAKLVLD---------SEVEAGQLLVV 250 (325)
Q Consensus 223 G~~~~~vv~p~g~~~~~---------~~l~~Gdv~vv 250 (325)
|.++..+-+++|..++- -.+++||.+.|
T Consensus 11 G~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV 47 (78)
T cd04456 11 GNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIV 47 (78)
T ss_pred CCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEE
Confidence 67788888887753221 24677777766
No 233
>PHA02890 hypothetical protein; Provisional
Probab=23.59 E-value=3.8e+02 Score=25.08 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=34.9
Q ss_pred EEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEe
Q 020545 21 IPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYN 69 (325)
Q Consensus 21 i~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N 69 (325)
.+.+++|+ +.+..-..+ ++.+.++.+||.|.+--++-|-+.-
T Consensus 95 FVlCL~Gs-~~In~~~~d------~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 95 FVACIEGS-CKINVNIGD------REISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred EEEEeCCe-EEEEEecCC------ceeeeeeecCceEEEEccceEEEEc
Confidence 45568999 998886655 5668899999999999999998876
No 234
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=22.72 E-value=3e+02 Score=24.53 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=36.5
Q ss_pred eeccc-cCCC--CeEEEEE--eCCeEEEEEEcCCCCC-------------CCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545 10 IVCLT-ENDL--HVIPIII--PCELGVAGMVLPNDQK-------------HSQEEIVLGLRKGDVIPVPLGSASWWYNN 70 (325)
Q Consensus 10 ~~~p~-h~~a--~ei~yV~--~G~~g~~~~v~~~~~~-------------~~~~~~~~~l~~GDv~~vP~G~~~~~~N~ 70 (325)
..-+| |+++ +-++||. .+. |.+.+.+|.... .........-++||++++|.=+-|...=.
T Consensus 108 ~h~~H~Hp~~~lSgvyYl~~p~~~-g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v~p~ 185 (201)
T TIGR02466 108 THSPHLHPGSVISGTYYVQTPENC-GAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLRHEVPPN 185 (201)
T ss_pred ccCceECCCceEEEEEEEeCCCCC-CceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCceecCCC
Confidence 33455 6664 5778887 455 667776654210 00111123569999999999999976544
No 235
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=22.62 E-value=3.3e+02 Score=26.16 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=46.7
Q ss_pred eEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 194 s~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
=+.|+.++.+-|++----.+..++..++|--=.+-++.|+|.-+--.+|++||-+.+
T Consensus 300 iVGRvKIErRPl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pvSV~eLk~GD~vlv 356 (376)
T COG1465 300 IVGRVKIERRPLMLIEAEYEGVEISTILQNAETIKLVNPDGEPVSVAELKPGDEVLV 356 (376)
T ss_pred EEEEEEeecCceEEEEEEecCcEEEEEeccceeEEEEcCCCcEeeeEecCCCCEEEE
Confidence 367899999988877766788899999999999999999997555568999996543
No 236
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=22.25 E-value=95 Score=26.91 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEe
Q 020545 17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPV 59 (325)
Q Consensus 17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~v 59 (325)
.|+-|+++-+|+ -+++|+- + ..+++||+++|
T Consensus 113 GaTIIAI~r~~e----~I~SPgP-----y---~vle~gDtlvv 143 (162)
T COG0490 113 GATVIAIVRNEE----KILSPGP-----Y---TVLEAGDTLVV 143 (162)
T ss_pred CcEEEEEEecCc----EecCCCc-----h---hhhcCCCEEEE
Confidence 345555555555 3445542 1 34666666543
No 237
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=20.79 E-value=4.4e+02 Score=24.43 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=47.1
Q ss_pred ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252 (325)
Q Consensus 193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~ 252 (325)
-+++.+.+.|.|-++-.=|.++..+.|=++|.-.++-+.|.....-.-++.+|--+.+--
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 578899999999999999999999999999999999999875432223566775444433
No 238
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=20.62 E-value=1.5e+02 Score=22.66 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=25.7
Q ss_pred eecCCCCEEEEEEeCcEE---EEEEeCCCceEEeEEecC
Q 020545 209 TYTADSVQVFYVVKGSGK---AQIVGLNAKLVLDSEVEA 244 (325)
Q Consensus 209 h~h~~A~ei~yV~~G~~~---~~vv~p~g~~~~~~~l~~ 244 (325)
-|+|++.+.+++...... ..+++..++.+++..+.+
T Consensus 17 GY~~~~~K~Avv~~~~~~~~~f~l~d~~~~~V~~g~~~~ 55 (91)
T PF02927_consen 17 GYLPDGPKVAVVQGDSGDPSTFELVDASGGKVYTGKLSP 55 (91)
T ss_dssp EEETTS--EEEEEESSSS--EEEEEETTSBEEEEEEEEE
T ss_pred CCCCCCCEEEEEEcCCCceeEEEEEcCCCCEEEEEEeeC
Confidence 488999999999987655 889998776666555443
No 239
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=20.56 E-value=1.1e+02 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=23.7
Q ss_pred cCCChhHHhhhcCCCHHHHHHHhccc
Q 020545 105 GGFSSEFTGRAYNMNENEAKILAKSQ 130 (325)
Q Consensus 105 ~~f~~~vLa~af~v~~~~~~~l~~~q 130 (325)
.+.+++-||++|+++.+.+.+|.+.+
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~~ 113 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKSH 113 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcCC
Confidence 47899999999999999999999776
No 240
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=20.49 E-value=86 Score=21.39 Aligned_cols=23 Identities=0% Similarity=0.080 Sum_probs=20.7
Q ss_pred CCChhHHhhhcCCCHHHHHHHhc
Q 020545 106 GFSSEFTGRAYNMNENEAKILAK 128 (325)
Q Consensus 106 ~f~~~vLa~af~v~~~~~~~l~~ 128 (325)
+.+-+.||.-|||++.++.+++.
T Consensus 19 ~~~~~~La~~FgIs~stvsri~~ 41 (53)
T PF13613_consen 19 NLTFQDLAYRFGISQSTVSRIFH 41 (53)
T ss_pred CCcHhHHhhheeecHHHHHHHHH
Confidence 67889999999999999999875
No 241
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=20.48 E-value=2.5e+02 Score=27.60 Aligned_cols=56 Identities=27% Similarity=0.311 Sum_probs=38.5
Q ss_pred eEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCCCCEEEEEEe
Q 020545 20 VIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 20 ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~~~l~~~~~~ 81 (325)
-..++++-+ |+.|+--|++ .-....+++||.++.|+ |+-+.-+=-|+....++.+.
T Consensus 118 ~a~ICikN~-GiSgi~V~~t-----~~lk~nm~~Gd~ivsrs~rgi~fLPQIgG~a~YLIv~l~ 175 (366)
T PF04943_consen 118 VATICIKNE-GISGIYVPNT-----NFLKHNMEEGDYIVSRSSRGINFLPQIGGEAIYLIVSLV 175 (366)
T ss_pred EEEEEEcCC-CeeEEEeCCC-----cceEeeeeeCCEEEEecccccccccccCceeEEEEEEEe
Confidence 456788999 9999988886 43458999999999996 44443333344344444444
No 242
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=20.24 E-value=5.8e+02 Score=22.22 Aligned_cols=69 Identities=12% Similarity=-0.037 Sum_probs=48.7
Q ss_pred ccCCeecCCCCEEEEEEeC-cEEEEEEeCCCc----eEEeEEecCccEEEECCccEEE-EEcCCCCEEEEEEeCC
Q 020545 205 MLSPTYTADSVQVFYVVKG-SGKAQIVGLNAK----LVLDSEVEAGQLLVVPRCFVVA-IIAGPEGIECFSITTS 273 (325)
Q Consensus 205 ~~~Ph~h~~A~ei~yV~~G-~~~~~vv~p~g~----~~~~~~l~~Gdv~vvP~G~~h~-~~~g~~~~~~~~~~~s 273 (325)
+...-.||..++-..=+.| ...+-|+.|.+. ..-......|+-+..=+|.+|. ..+-+....|+.+...
T Consensus 70 i~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvdr~ 144 (171)
T PRK13395 70 ITMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVDRG 144 (171)
T ss_pred eeeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEeCC
Confidence 4455688999998888888 888888887543 1222358899999999999988 4454444455555543
No 243
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=20.22 E-value=1.5e+02 Score=26.21 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=37.0
Q ss_pred EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545 195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV 250 (325)
Q Consensus 195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv 250 (325)
+....+.+|-+..- =.-.++.+.+|++|.+++.....++.. .-..+.+||++-.
T Consensus 30 ~~~~~~~~ge~l~~-~g~~~~~~~~v~~G~v~~~~~~~~~~~-~i~~~~~g~~~g~ 83 (236)
T PRK09392 30 AFLQRFPPGTMLIT-EGEPADFLFVVLDGLVELSASSQDRET-TLAILRPVSTFIL 83 (236)
T ss_pred cceeecCCCCEEEe-CCCccceEEEEEeCEEEEEEcCCCceE-EEEEeCCCchhhh
Confidence 34566777765542 224578999999999999877654433 3457889998753
No 244
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=20.16 E-value=1.2e+02 Score=29.95 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=44.8
Q ss_pred EEEEEecCCC-ccCCe---ecCCCCEEEEEEeCcEEEEEEeCCCceEEe------------------------EEecCcc
Q 020545 195 CTILKLDANA-MLSPT---YTADSVQVFYVVKGSGKAQIVGLNAKLVLD------------------------SEVEAGQ 246 (325)
Q Consensus 195 ~~~v~l~pg~-~~~Ph---~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~------------------------~~l~~Gd 246 (325)
...+.+.|.| -..-| | .+..|...+-|+=+.=+..|+...++. -.=++|+
T Consensus 199 yrFvy~Gp~gSwtp~HaDVf--~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge 276 (427)
T KOG2131|consen 199 YRFVYAGPAGSWTPFHADVF--HSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGE 276 (427)
T ss_pred eeEEEeccCCCCCccchhhh--cCCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCc
Confidence 4456777544 44445 5 478889999999999999986421111 1226999
Q ss_pred EEEECCccEEEEEc
Q 020545 247 LLVVPRCFVVAIIA 260 (325)
Q Consensus 247 v~vvP~G~~h~~~~ 260 (325)
+++||.|+-|-..|
T Consensus 277 ~VFvPsGW~hQV~N 290 (427)
T KOG2131|consen 277 TVFVPSGWHHQVLN 290 (427)
T ss_pred eeeccCcccccccc
Confidence 99999999986555
No 245
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=20.14 E-value=93 Score=33.68 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.8
Q ss_pred eEEecCccEEEECCccEEEEEcCCCC-EEEEEEeCCC
Q 020545 239 DSEVEAGQLLVVPRCFVVAIIAGPEG-IECFSITTST 274 (325)
Q Consensus 239 ~~~l~~Gdv~vvP~G~~h~~~~g~~~-~~~~~~~~s~ 274 (325)
...|++|+.++||.|++|..+.-.+. +.+..|+.+.
T Consensus 197 ~~~l~~g~T~~iPsGwIhAV~Tp~d~l~fgGnflhsl 233 (776)
T KOG1633|consen 197 KCILKQGQTLFIPSGWIHAVLTPTDCLVFGGNFLHSL 233 (776)
T ss_pred EEEeccCceEecccceeEeeecCcchheeccchhhhh
Confidence 35789999999999999997764433 4444555443
No 246
>PHA02951 Hypothetical protein; Provisional
Probab=20.11 E-value=3.1e+02 Score=26.28 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=37.7
Q ss_pred CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCCCCEEEEEEe
Q 020545 19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGSSDVVIVFVG 81 (325)
Q Consensus 19 ~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~~~l~~~~~~ 81 (325)
=....++.-+ |+.|+--|++ ... ...+++||+++.|+ |+-+.=+=-|+....++.+.
T Consensus 125 FvAtICIKNe-GiSgl~Vp~t----~~L-K~ni~~GD~IVsRs~rGv~fLPQIGGeaiYLIVsL~ 183 (337)
T PHA02951 125 FTATICLKNE-GISGLYIPGT----SVL-KINICQGDTIVSRSSRGVQFLPQIGGEAIYLVVSLC 183 (337)
T ss_pred eEEEEEEcCC-CeeEEEeCCC----chh-eeeeccCcEEEEeccccceeccccCceeEEEEEEEe
Confidence 3567789999 9999998886 233 46899999999997 43332222333344455544
Done!