BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020548
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 172/300 (57%), Gaps = 13/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD + E + +A+
Sbjct: 89 ISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPK-FGINVSFVDAAKPEEIRAAM- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYXQQPLQLGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S++K+I+G D+I G + G ++ + G + G M+P A+ + LG+R
Sbjct: 207 SVTKYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGXMSPFNAWLTLRGVKTLGIR 264
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ HC AL AR ++ +V YPGL HP +EL + + GG++ ++
Sbjct: 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGIISFEIAGGL 321
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
+A R M N + +AVSLG ETL+ + EE+ AGI+ GL+R+SVG
Sbjct: 322 EAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 171/300 (57%), Gaps = 13/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD + E + +A+
Sbjct: 89 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDAAKPEEIRAAM- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S++ +I+G D+I G + G ++ + G + G M+P A+ + LG+R
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLRGVKTLGIR 264
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ HC AL AR ++ +V YPGL HP +EL + + GG++ ++
Sbjct: 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGIISFEIAGGL 321
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
+A R M N + +AVSLG ETL+ + EE+ AGI+ GL+R+SVG
Sbjct: 322 EAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 171/300 (57%), Gaps = 13/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD + E + +A+
Sbjct: 89 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDAAKPEEIRAAM- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S++ +I+G D+I G + G ++ + G + G M+P A+ + LG+R
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLRGVKTLGIR 264
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ HC AL AR ++ +V YPGL HP +EL + + GG++ ++
Sbjct: 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGIISFEIAGGL 321
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
+A R M N + +AVSLG ETL+ + EE+ AGI+ GL+R+SVG
Sbjct: 322 EAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 13/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD + E + +A+
Sbjct: 89 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S++ +I+G D+I G + G ++ + G + G M+P A+ + LG+R
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLRGVKTLGIR 264
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ HC AL AR ++ +V YPGL HP +EL + + GG++ ++
Sbjct: 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGIISFEIAGGL 321
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
+A R M N + +AVSLG ETL+ + EE+ AGI+ GL+R+SVG
Sbjct: 322 EAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 169/300 (56%), Gaps = 13/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD E + +A+
Sbjct: 89 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAGKPEEIRAAM- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S++ +I+G D+I G + G ++ + G + G M+P A+ + LG+R
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLRGVKTLGIR 264
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ HC AL AR ++ +V YPGL HP +EL + + GG++ ++
Sbjct: 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGIISFEIAGGL 321
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
+A R M N + +AVSLG ETL+ + EE+ AGI+ GL+R+SVG
Sbjct: 322 EAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S L L G V+ TLYG T A L H + VD++D + + +A+
Sbjct: 90 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAMT 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P LGAD+VVH
Sbjct: 149 PA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVH 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++SG DI AG V G LV+ + QG + G ++P A L I L LR
Sbjct: 208 SATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 180 MKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
M HC A + A R ++ L + YPGL P + L + ++ GG++ +++
Sbjct: 266 MDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP---GGMIAFELKGG 321
Query: 237 EKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
A R MN LQ +++ AVSLG E+L EE+A GIS GLVR+S
Sbjct: 322 IGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLS 377
Query: 296 VGYLGTLDQRWSQFEKAL 313
VG L +D + ++AL
Sbjct: 378 VG-LEDIDDLLADVQQAL 394
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 176/321 (54%), Gaps = 17/321 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ ++ + +G H+++ LYG THAL H + I F++ + V +
Sbjct: 87 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTAIPGEVKKHM- 144
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPLVLSPARLGADVVV 118
+ TK++YFE+ +NPTL + ++ + + AH + GV V+ DNTF SP++ +P G DVVV
Sbjct: 145 KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVV 204
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
HS +K+I+G D++AG +CG A+L+ + + G + G ++P A+ ++ + L +
Sbjct: 205 HSATKYINGHTDVVAGLICGKADLLQQIRMV--GIKDITGSVISPHDAWLITRGLSTLNI 262
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
RMK A+ A +K KV YPG EDH H++ K +G ++ +++
Sbjct: 263 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRM---YGSMITFILKSG 319
Query: 237 -EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
E A +L++ L+ +AVSLG E+L+ + EE+ AGI+ G++R+S
Sbjct: 320 FEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLS 375
Query: 296 VGYLGTLDQRWSQFEKALSRM 316
VG + D+ + F++ L +
Sbjct: 376 VG-IEDADELIADFKQGLDAL 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S L L G V+ TLYG T A L H + VD++D + + +A+
Sbjct: 90 MGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGE-FGVKLRHVDMADLQALEAAMT 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P LGAD+VVH
Sbjct: 149 PA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVH 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S + ++SG DI AG V G LV+ + QG + G ++P A L I L LR
Sbjct: 208 SATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 180 MKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
M HC A + A R ++ L + YPGL P + L + ++ GG++ +++
Sbjct: 266 MDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP---GGMIAFELKGG 321
Query: 237 EKA-NRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
A R MN LQ +++ AVSLG E+L EE+A GIS GLVR+S
Sbjct: 322 IGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLS 377
Query: 296 VGYLGTLDQRWSQFEKAL 313
VG L +D + ++AL
Sbjct: 378 VG-LEDIDDLLADVQQAL 394
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S L L G V+ TLYG T A L H + VD++D + + +A+
Sbjct: 90 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAMT 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P LGAD+VVH
Sbjct: 149 PA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVH 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S + ++SG DI AG V G LV+ + QG + G ++P A L I L LR
Sbjct: 208 SATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 180 MKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
M HC A + A R ++ L + YPGL P + L + ++ GG++ +++
Sbjct: 266 MDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP---GGMIAFELKGG 321
Query: 237 EKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
A R MN LQ +++ AVSLG E+L EE+A GIS GLVR+S
Sbjct: 322 IGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLS 377
Query: 296 VGYLGTLDQRWSQFEKAL 313
VG L +D + ++AL
Sbjct: 378 VG-LEDIDDLLADVQQAL 394
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 17/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ + +G H+++ LYG THAL H R + F+D++ + +
Sbjct: 23 MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQL-RKFGVEVDFIDMAVPGNIEKHL- 80
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTVVVDNTF-SPLVLSPARLGADVVV 118
+ T+++YFE+ +NPTL V +I + + A K + V+VDNTF SP++ +P LG D+VV
Sbjct: 81 KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
HS +K+I+G D++AG VC A+++ + QG + G ++P A+ ++ L +
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKS--QGIKDITGAIISPHDAWLITRGTLTLDM 198
Query: 179 RMK---EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235
R+K E+ + F K + KV YPGL DHP HE+ K FG ++ D++
Sbjct: 199 RVKRAAENAQKVAEFLHEHKAVK-KVYYPGLPDHPGHEIAKKQMKM---FGSMIAFDVDG 254
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
EKA ++++ + +AVSLG E+L+ + EE+ AG++ L+R+S
Sbjct: 255 LEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLS 310
Query: 296 VG 297
VG
Sbjct: 311 VG 312
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 167/317 (52%), Gaps = 18/317 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AISS + G H++A TLYG T +L TH+ PR I +D SD E V +A
Sbjct: 84 MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW- 141
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK++Y ES +NPT V++I ++ + H++G +VVD TF SP L P LGAD+ +H
Sbjct: 142 KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALH 201
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S+SK+I+G D+I G + A + ++ + A G M P AF + + L +
Sbjct: 202 SVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA----GSLMAPMDAFLCARGMKTLPI 257
Query: 179 RMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
RM+ H L A+ +++ +KV +PGLE P H++ K G+G +M++
Sbjct: 258 RMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSF 314
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
E A +LM +L+ +AVSLG +TL+ + GI+ LVR+SV
Sbjct: 315 EAAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISV 370
Query: 297 GYLGTLDQRWSQFEKAL 313
G + +D + ++AL
Sbjct: 371 G-IENVDDIIADLKQAL 386
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 166/317 (52%), Gaps = 18/317 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AISS + G H++A TLYG T +L TH+ PR I +D SD E V +A
Sbjct: 84 MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW- 141
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK++Y ES +NPT V++I ++ + H++G +VVD TF SP L P LGAD+ +H
Sbjct: 142 KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALH 201
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S+S +I+G D+I G + A + ++ + A G M P AF + + L +
Sbjct: 202 SVSXYINGHGDVIGGVSSAKTAEDIATIKFYRKDA----GSLMAPMDAFLCARGMKTLPI 257
Query: 179 RMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
RM+ H L A+ +++ +KV +PGLE P H++ K G+G +M++
Sbjct: 258 RMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSF 314
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
E A +LM +L+ +AVSLG +TL+ + GI+ LVR+SV
Sbjct: 315 EAAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISV 370
Query: 297 GYLGTLDQRWSQFEKAL 313
G + +D + ++AL
Sbjct: 371 G-IENVDDIIADLKQAL 386
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 163/317 (51%), Gaps = 19/317 (5%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG 62
A +S +M+L +G HVVA LYGGT L R + +FVD++D +AI +
Sbjct: 93 AATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAI-RA 151
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSI 121
TK+++ E+ +NP L + +I ++ +A G+ VVDNTF SP++ P LGAD+VVHS
Sbjct: 152 DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSA 211
Query: 122 SKFISGGADIIAG-AVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
+K+++G +D++ G AV G A L M L +G P +F + L LR
Sbjct: 212 TKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS----IGGVQGPFDSFLALRGLKTLPLR 267
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 236
M+ HC AL A+ ++ KV+YPGL HP H L K + GFGG++ + ++
Sbjct: 268 MRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFGGIVSIVLKGGF 324
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
+ A R + + +A SLG E+L+ + + GIS LVR+SV
Sbjct: 325 DAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSV 380
Query: 297 GYLGTLDQRWSQFEKAL 313
G D R E+AL
Sbjct: 381 GIEDLGDLR-GDLERAL 396
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 153/301 (50%), Gaps = 16/301 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M A + +L+ L +GGH+V Y T + P+ IT T +D +D + A+
Sbjct: 139 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVIDPADVGALELALN 197
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
Q + + + ES +NP L +I +S+L H+KG V +D TF +PL LGAD+V+H
Sbjct: 198 QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLH 257
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KF+ G D++AG + GP LV+ + +LH +LG +NP A+ + + L LR
Sbjct: 258 SATKFLGGHNDVLAGCISGPLKLVSEIRNLHH----ILGGALNPNAAYLIIRGMKTLHLR 313
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 236
+++ AL A ++ V YPGL+ HP H + K GFGG + +++ +
Sbjct: 314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDL 370
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
+ ++ L + ++A S G E+++ +L+ ++A GI LVR S
Sbjct: 371 LTTAKFVDAL----KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSF 426
Query: 297 G 297
G
Sbjct: 427 G 427
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 142/301 (47%), Gaps = 19/301 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A L + G HVV YGGT L+ F N+ T V ++D + V +AI
Sbjct: 91 MAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVF-TGWNVEYTPVALADLDAVRAAI- 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ T++++ E+ +NP L++A+I +++L D V+VDNTF SP + P LGADVV+H
Sbjct: 149 RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLH 208
Query: 120 SISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S + +I G +D++ GA V L S L GA G P A+ + L L
Sbjct: 209 STTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGA----GAVPGPFDAYLTMRGLKTLVL 264
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
RM+ H A A + + VLYPGL HP H + A + GFGG++ + M
Sbjct: 265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAV---AARQMRGFGGMVSVRMRAG 321
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
A + N +A SLG E+L+ + + LVR+SV
Sbjct: 322 RTAAEQLCAKTN---IFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRLSV 375
Query: 297 G 297
G
Sbjct: 376 G 376
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 151/299 (50%), Gaps = 12/299 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI V G +VA YGG++ L R C FVD D + + +A+
Sbjct: 77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC-YRVLFVDQGDEQALRAALA 135
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ + K++ ES SNP L V +I ++ LA + G VVDNTF SP + +P LGAD+V+H
Sbjct: 136 E-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSERIPHLGL 178
S + +++G +D++AG V V + + + + G + + L +P + L
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 179 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 238
+ +A++ + + L K+ +P L ++ HE+ A ++ GFG +L +++ +E+
Sbjct: 255 AQRN--AQAIVKYLQTQPLVKKLYHPSLPENQGHEI---AARQQKGFGAMLSFELDGDEQ 309
Query: 239 ANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
L +L + F +A SLG E+L+ + E +A AGIS L+R+S G
Sbjct: 310 T--LRRFLGGLSLF-TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG 365
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 153/306 (50%), Gaps = 28/306 (9%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+S+V L +G +VA +YGG+ LL+ PR+ + V+ + + V +AI
Sbjct: 158 MAALSAV-THLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTKLDEVAAAI- 214
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+TK+++ ES +NP +++I ++S +AH +G V+VDN+ SP++ P LGAD+V+H
Sbjct: 215 GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMH 274
Query: 120 SISKFISGGADIIAG--AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
S +KFI+G +D++AG AV G L + L G + P + I +
Sbjct: 275 SATKFIAGHSDVMAGVLAVKG-EKLAKEVYFLQNSE----GSGLAPFDCWLCLRGIKTMA 329
Query: 178 LRMKEHCHRALIFA------RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231
LR+++ A A R+K KV Y GL DHP H L S A G G +
Sbjct: 330 LRIEKQQENARKIAMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSF 382
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGL 291
+ L +L ++ +AVS G ++L+ + AE + G++ L
Sbjct: 383 ITGSVA----LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438
Query: 292 VRMSVG 297
VR+S G
Sbjct: 439 VRISAG 444
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 161/316 (50%), Gaps = 30/316 (9%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVDISDHEMVNS- 57
SA ++ ++Q G H V+ +YGGTH +F + N + T+F + +++N
Sbjct: 80 SATTATILQSLPQGSHAVSIGDVYGGTH----RYFTKVANAHGVETSFTN----DLLNDL 131
Query: 58 -AIVQGRTKVLYFESISNPTLAVANIPELSRL----AHDKGVTVVVDNTF-SPLVLSPAR 111
+++ TK+++ E+ +NPTL V +I +++ L A + V +VVDNTF SP + +P
Sbjct: 132 PQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLN 191
Query: 112 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 171
GAD+VVHS +K+I+G +D++ G + + + Q A +G +P A+
Sbjct: 192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IGAIPSPFDAWLTHR 248
Query: 172 RIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228
+ L LR+++ A A + K+ + V YPGL+ HP+++++ G GG+
Sbjct: 249 GLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALG-GGM 307
Query: 229 LCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGI 287
+ ++ E A++ + + + +A SLG E+L+ + E + +G+
Sbjct: 308 ISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKEAREASGV 363
Query: 288 SAGLVRMSVGYLGTLD 303
LVR+SVG T D
Sbjct: 364 FDDLVRISVGIEDTDD 379
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 154/302 (50%), Gaps = 21/302 (6%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVDISDHEMVNSAI 59
A + + L +G ++ +YGGT+ +F + + + +FVD S +++ +AI
Sbjct: 93 AATVTITHLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVDCSKIKLLEAAI 148
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVV 117
TK+++ E+ +NPT V +I + + H G + +VVDNTF SP P LGAD+
Sbjct: 149 TP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADIS 207
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
++S +K+++G +D++ G V +++ + Q + LG +P + + + L
Sbjct: 208 MYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDCYLCNRGLKTLH 264
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235
+RM++H + A+ ++ KV+YPGL HP HEL+K G G++ ++
Sbjct: 265 VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTGMVTFYIKG 321
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
+ + +L+N F +A SLG +E+L + ++ + GIS L+R+S
Sbjct: 322 TLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLS 378
Query: 296 VG 297
VG
Sbjct: 379 VG 380
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 154/302 (50%), Gaps = 21/302 (6%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVDISDHEMVNSAI 59
A + + L +G ++ +YGGT+ +F + + + +FVD S +++ +AI
Sbjct: 97 AATVTITHLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVDCSKIKLLEAAI 152
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVV 117
TK+++ E+ +NPT V +I + + H G + +VVDNTF SP P LGAD+
Sbjct: 153 TP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADIS 211
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
++S +K+++G +D++ G V +++ + Q + LG +P + + + L
Sbjct: 212 MYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDCYLCNRGLKTLH 268
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235
+RM++H + A+ ++ KV+YPGL HP HEL+K G G++ ++
Sbjct: 269 VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTGMVTFYIKG 325
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMS 295
+ + +L+N F +A SLG +E+L + ++ + GIS L+R+S
Sbjct: 326 TLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLS 382
Query: 296 VG 297
VG
Sbjct: 383 VG 384
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 159/322 (49%), Gaps = 39/322 (12%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ ++ L +G VV L+G T +L P + I FVD+ D V A
Sbjct: 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP-SFGIEVRFVDVMDSLAVEHACD 165
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 119
+ TK+L+ E+ISNP L VA++ LS++ H KG+ +VVD T + P +L RLG D+ V
Sbjct: 166 ET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVL 224
Query: 120 SISKFISGGADIIAG--------------------AVCGP-ANLVNSMMDLHQGALMLLG 158
S +KFISGG + G A GP A L + ++ Q LG
Sbjct: 225 SSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQN----LG 280
Query: 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK--VLYPGLEDHPHHELLK 216
P+++P A+ S + + LR++ C A A + + V +P L D P +
Sbjct: 281 PSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFY---- 336
Query: 217 SMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 275
++A +++ + G +L ++E++E + R M+ L+ + A ++ ++L+
Sbjct: 337 AIAKRQFRYAGSILTFELESKEASYRFMDALKLIRR----ATNIHDNKSLILSPYHVIYA 392
Query: 276 ELNAEEKALAGISAGLVRMSVG 297
+ EE+ IS ++R+SVG
Sbjct: 393 LNSHEERLKLEISPAMMRLSVG 414
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 17/320 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+ + L L +G +VAAR+L+G + + PR + T FVD D A+
Sbjct: 106 MAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL- 163
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+ ++FE+ SNP ++ +I ++ LAH G VV+DN F +PL+ LG DVVV+
Sbjct: 164 SVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVY 223
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S + I G ++ GA+ G ++ + Q + GP M+ A+ L + + L +R
Sbjct: 224 SGTXHIDGQGRVLGGAILGDREYIDGPV---QKLMRHTGPAMSAFNAWVLLKGLETLAIR 280
Query: 180 MKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL---CLDME 234
++ A A + V YP L HP ++L A ++ GG + LD
Sbjct: 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDL----AKRQMSGGGTVVTFALDCP 336
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRM 294
+ R L ++ +LG ++L+ + E +A G+ G+VR+
Sbjct: 337 EDVAKQRAFEVLDKMRLID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRI 395
Query: 295 SVGYLGTLDQRWSQFEKALS 314
SVG L D + ++ALS
Sbjct: 396 SVG-LEDTDDLIADIDRALS 414
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 54/335 (16%)
Query: 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 74
G VVAA+ L+G T L +T +VD + E V A+ +T+ ++ E+++N
Sbjct: 95 GDEVVAAKGLFGQTIGLFGQVL-SLMGVTVRYVD-PEPEAVREAL-SAKTRAVFVETVAN 151
Query: 75 PTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADII 132
P L V ++ L+ LA + GV +VVDNTF + + P GA VVV S++ + SG ++
Sbjct: 152 PALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTXWASGHGSVL 211
Query: 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE------LSERIPHLG--------- 177
GAV ++ +L + L P + ++ +E ER+ LG
Sbjct: 212 GGAV------LSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALS 265
Query: 178 ---------------LRMKEHCHRALIFARRMK-KLGLKVL-YPGLEDHPHHELLKSMAN 220
LR+ A A R++ +K L YPGL + P H A
Sbjct: 266 PFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHR----NAR 321
Query: 221 KEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNA 279
K GG +L LD+ E+A+R + ++ A +LG TL+ L
Sbjct: 322 KYLASGGPILTLDLGDLERASRFLGAIRL-----LKAANLGDARTLLVHPWTTTHSRLKE 376
Query: 280 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314
E + AG++ GLVR+SVG LD + FE+AL
Sbjct: 377 EARLQAGVTPGLVRVSVGLEDPLDL-LALFEEALE 410
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 138/323 (42%), Gaps = 40/323 (12%)
Query: 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 67
L L +G ++V+ LYGGT R I F + A+ +T+
Sbjct: 90 LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALTDEKTRAW 148
Query: 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFI 125
+ ESI NP L + ++ L++ A +KGV ++VDNTF +L P GA +V HS++K++
Sbjct: 149 WVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWV 208
Query: 126 SGGADIIAGAVCGPAN----------LVNSMMDLHQ-------GALMLL----------- 157
G +IAGA+ N L H G L +
Sbjct: 209 GGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQ 268
Query: 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELL 215
G + P A+ + + L LR + H L A + + V YPGL HPHH+
Sbjct: 269 GQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA 328
Query: 216 KSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXX 274
+ + G +L ++ E A R ++ L+ + ++G TL
Sbjct: 329 QKYFKGKP--GAVLTFGLKGGYEAAKRFISRLKLISHL----ANVGDTRTLAIHPASTTH 382
Query: 275 XELNAEEKALAGISAGLVRMSVG 297
+L+ EE+A AG+S +VR+SVG
Sbjct: 383 SQLSPEEQAQAGVSPEMVRLSVG 405
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 148/325 (45%), Gaps = 28/325 (8%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV- 60
+A+++ ++ G HV+ T Y + + + +TT++ D ++ + IV
Sbjct: 88 AAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFD----PLIGADIVK 142
Query: 61 --QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSPA-RLGAD 115
Q TK+++ ES + T+ V ++P + +++DNT++ VL A G D
Sbjct: 143 HLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGID 202
Query: 116 VVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 174
V + + +K++ G +D + G AVC L + A L+G ++ A+ S +
Sbjct: 203 VSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMGQMVDADTAYITSRGLR 257
Query: 175 HLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEY-GFGGLLCL 231
LG+R+++H +L A + + +V +P L HE K +++ G GL
Sbjct: 258 TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK----RDFTGSSGLFSF 313
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGL 291
++ + L NYL N++ F MA S G YE+L+ + + + S L
Sbjct: 314 VLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIRPQGE--IDFSGTL 370
Query: 292 VRMSVGYLGTLDQRWSQFEKALSRM 316
+R+ +G L +D + + +R+
Sbjct: 371 IRLHIG-LEDVDDLIADLDAGFARI 394
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 148/325 (45%), Gaps = 28/325 (8%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV- 60
+A+++ ++ G HV+ T Y + + + +TT++ D ++ + IV
Sbjct: 108 AAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFD----PLIGADIVK 162
Query: 61 --QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSPA-RLGAD 115
Q TK+++ ES + T+ V ++P + +++DNT++ VL A G D
Sbjct: 163 HLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGID 222
Query: 116 VVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 174
V + + +K++ G +D + G AVC L + A L+G ++ A+ S +
Sbjct: 223 VSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMGQMVDADTAYITSRGLR 277
Query: 175 HLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEY-GFGGLLCL 231
LG+R+++H +L A + + +V +P L HE K +++ G GL
Sbjct: 278 TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK----RDFTGSSGLFSF 333
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGL 291
++ + L NYL N++ F MA S G YE+L+ + + + S L
Sbjct: 334 VLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIRPQGE--IDFSGTL 390
Query: 292 VRMSVGYLGTLDQRWSQFEKALSRM 316
+R+ +G L +D + + +R+
Sbjct: 391 IRLHIG-LEDVDDLIADLDAGFARI 414
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 147/325 (45%), Gaps = 28/325 (8%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV- 60
+A+++ ++ G HV+ T Y + + + +TT++ D ++ + IV
Sbjct: 88 AAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFD----PLIGADIVK 142
Query: 61 --QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSPA-RLGAD 115
Q TK+++ ES + T+ V ++P + +++DNT++ VL A G D
Sbjct: 143 HLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGID 202
Query: 116 VVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 174
V + + + ++ G +D + G AVC L + A L+G ++ A+ S +
Sbjct: 203 VSIQAATXYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMGQMVDADTAYITSRGLR 257
Query: 175 HLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEY-GFGGLLCL 231
LG+R+++H +L A + + +V +P L HE K +++ G GL
Sbjct: 258 TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK----RDFTGSSGLFSF 313
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGL 291
++ + L NYL N++ F MA S G YE+L+ + + + S L
Sbjct: 314 VLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIRPQGE--IDFSGTL 370
Query: 292 VRMSVGYLGTLDQRWSQFEKALSRM 316
+R+ +G L +D + + +R+
Sbjct: 371 IRLHIG-LEDVDDLIADLDAGFARI 394
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 72 ISNPTLAVANIPELSRLAH---DKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS 126
I+ P N+P++ ++A + V ++V+ ++ + +S +GAD +V S K ++
Sbjct: 153 ITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212
Query: 127 GGADI-IAGAVCGPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPHLGLRMK--- 181
I + G A +V + ++ + LLG T L PH+ R+K
Sbjct: 213 ASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWD 272
Query: 182 EHCHRALIFARRMKKLGLKVLYPGLEDHPH-HELL 215
E +A FA M+KLG+K L D+PH H+L+
Sbjct: 273 EEVEKARRFAAEMEKLGIK----QLGDNPHNHDLM 303
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 105
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 106 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 151
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 105
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 106 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 151
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 105
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 106 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 151
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 105
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 106 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSM 146
+ SP R+ + H+++ ++G A A G CGP ++ +M
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAM 256
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 105
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 106 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDL 149
+ SP R+ + H+++ ++G A A G CGP ++ +M +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASV 259
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 105
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 106 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSM 146
+ SP R+ + H+++ ++G A A G CGP ++ +M
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAXAFAMTGWRIGYACGPKEVIKAM 256
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 62 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 103
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 62 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 103
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 62 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 103
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 62 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 103
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 198 GLKVLYPGLEDHPHHELLKSMANKEYG---FGGLL 229
++VL+PG+EDHP + ++ AN E FG LL
Sbjct: 58 AMRVLFPGIEDHPVLKEMEVQANVEKSLTLFGQLL 92
>pdb|3FD0|A Chain A, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
pdb|3FD0|B Chain B, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
Length = 409
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 75 PTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGAD 130
P+ + I E + + V VDN + V + P +GAD++ S+ GG
Sbjct: 175 PSFTIEKIKEXVTFVKNINPNIIVFVDNCYGEFVERIEPTEVGADIIAGSLIXNPGGGLA 234
Query: 131 IIAGAVCGPANLVN 144
G + G LV+
Sbjct: 235 KTGGYIAGRNTLVD 248
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 63 RTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLSP 109
RT +++F S +NPT A A + EL A G +V D ++ + +P
Sbjct: 209 RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNP 258
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 60 VQGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSPLVLSPAR----L 112
V RT+ L S NPT AV + EL + +A + V+ D + LV AR
Sbjct: 157 VTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLA 216
Query: 113 GAD-------VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 165
G D + + F G I G CGPA L+ + Q + G P V
Sbjct: 217 GFDGMAERTITISSAAXMFNCTGWKI--GWACGPAELIAGVRAAKQYLSYVGGAPFQPAV 274
Query: 166 AFELS 170
A L
Sbjct: 275 ALALD 279
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH 175
VV+H +F S GADI A + L Q + P +A +
Sbjct: 53 VVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIA-AIHGAALG 111
Query: 176 LGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206
GL CH FA KLGL L GL
Sbjct: 112 GGLEFAXSCHXR--FATESAKLGLPELTLGL 140
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 56 NSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGAD 115
+S V+ T +L ++SI A I + + D VV N PL L A LG D
Sbjct: 35 DSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNR-DPLKLPWAELGID 93
Query: 116 VVVHSISKFISG---GADIIAGA 135
+V+ F+ G G I AGA
Sbjct: 94 IVIEGTGVFVDGPGAGKHIQAGA 116
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 79 VANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGA----------DVVVHSISKFISGG 128
+ N+PEL+ +A++ V+VD+ S V+ G D+++ + SK ++
Sbjct: 189 IVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS- 247
Query: 129 ADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 163
+ G V G A++++ + H ++ +M P
Sbjct: 248 ---LGGFVAGDADVIDFLK--HNARSVMFSASMTP 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,967,107
Number of Sequences: 62578
Number of extensions: 336073
Number of successful extensions: 970
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 51
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)