Query 020548
Match_columns 324
No_of_seqs 204 out of 2527
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0626 MetC Cystathionine bet 100.0 2.9E-50 6.2E-55 350.3 33.6 304 1-316 88-395 (396)
2 PRK08861 cystathionine gamma-s 100.0 3.7E-49 8E-54 350.5 35.1 305 1-319 78-387 (388)
3 PF01053 Cys_Met_Meta_PP: Cys/ 100.0 3E-49 6.4E-54 348.8 31.2 300 1-314 80-386 (386)
4 PLN02242 methionine gamma-lyas 100.0 3.8E-48 8.3E-53 347.9 35.6 314 1-316 101-416 (418)
5 PRK08249 cystathionine gamma-s 100.0 4.2E-48 9.1E-53 346.2 34.8 304 1-318 89-396 (398)
6 PRK09028 cystathionine beta-ly 100.0 3.6E-48 7.8E-53 343.7 33.6 299 1-317 86-389 (394)
7 COG2873 MET17 O-acetylhomoseri 100.0 1.7E-48 3.7E-53 325.0 26.9 307 1-316 87-426 (426)
8 PRK08045 cystathionine gamma-s 100.0 2.6E-47 5.5E-52 339.8 34.7 304 1-318 77-385 (386)
9 PRK07504 O-succinylhomoserine 100.0 2.6E-47 5.6E-52 341.7 34.5 303 1-317 90-397 (398)
10 PRK08133 O-succinylhomoserine 100.0 2.8E-47 6.1E-52 340.9 33.4 301 1-315 86-390 (390)
11 PRK08776 cystathionine gamma-s 100.0 8E-47 1.7E-51 338.4 34.5 303 1-317 85-392 (405)
12 KOG0053 Cystathionine beta-lya 100.0 3.4E-47 7.4E-52 326.4 30.4 303 1-317 102-408 (409)
13 PRK08248 O-acetylhomoserine am 100.0 7.5E-47 1.6E-51 340.5 34.2 308 1-317 89-429 (431)
14 TIGR02080 O_succ_thio_ly O-suc 100.0 1.3E-46 2.7E-51 335.2 34.4 301 1-315 76-381 (382)
15 PRK08114 cystathionine beta-ly 100.0 8.5E-47 1.8E-51 333.8 32.9 298 1-316 87-394 (395)
16 PRK05967 cystathionine beta-ly 100.0 1.3E-46 2.8E-51 333.0 33.0 297 1-317 89-393 (395)
17 TIGR01325 O_suc_HS_sulf O-succ 100.0 1.4E-46 3E-51 335.9 33.1 299 1-313 79-380 (380)
18 TIGR01328 met_gam_lyase methio 100.0 2.9E-46 6.3E-51 334.2 34.6 304 1-316 84-391 (391)
19 PRK08574 cystathionine gamma-s 100.0 3.2E-46 6.8E-51 333.0 34.6 302 1-316 78-385 (385)
20 PRK06702 O-acetylhomoserine am 100.0 4.2E-46 9.2E-51 333.0 33.2 307 1-316 86-425 (432)
21 PRK06234 methionine gamma-lyas 100.0 7.5E-46 1.6E-50 332.8 34.7 304 1-316 89-398 (400)
22 PRK05939 hypothetical protein; 100.0 6.2E-46 1.3E-50 331.8 33.8 304 1-315 72-396 (397)
23 PRK06176 cystathionine gamma-s 100.0 1E-45 2.2E-50 329.2 33.9 301 1-316 75-379 (380)
24 PRK06084 O-acetylhomoserine am 100.0 1.4E-45 3E-50 332.1 34.8 308 1-317 83-424 (425)
25 PRK06460 hypothetical protein; 100.0 1.5E-45 3.3E-50 328.2 34.3 302 1-316 70-375 (376)
26 PRK07049 methionine gamma-lyas 100.0 1.8E-45 3.9E-50 331.8 34.4 301 1-315 108-426 (427)
27 PRK07810 O-succinylhomoserine 100.0 2.1E-45 4.5E-50 329.4 33.5 299 1-313 95-402 (403)
28 PRK07671 cystathionine beta-ly 100.0 2.8E-45 6.1E-50 326.3 33.9 299 1-314 75-377 (377)
29 PLN02509 cystathionine beta-ly 100.0 1.5E-45 3.3E-50 332.3 32.5 300 1-315 158-461 (464)
30 TIGR01329 cysta_beta_ly_E cyst 100.0 3.6E-45 7.8E-50 326.0 34.3 301 1-316 72-376 (378)
31 PRK08134 O-acetylhomoserine am 100.0 5.2E-45 1.1E-49 328.4 34.8 310 1-319 89-431 (433)
32 PRK07812 O-acetylhomoserine am 100.0 7.1E-45 1.5E-49 327.1 35.1 305 1-317 94-433 (436)
33 PRK07503 methionine gamma-lyas 100.0 7.9E-45 1.7E-49 326.2 34.7 304 1-318 90-399 (403)
34 cd00614 CGS_like CGS_like: Cys 100.0 6.5E-45 1.4E-49 324.5 33.9 300 1-314 65-369 (369)
35 PRK07811 cystathionine gamma-s 100.0 9.3E-45 2E-49 324.4 34.4 297 1-314 86-387 (388)
36 PRK08064 cystathionine beta-ly 100.0 2E-44 4.3E-49 322.5 34.3 303 1-318 79-385 (390)
37 PRK05994 O-acetylhomoserine am 100.0 2.6E-44 5.6E-49 324.7 34.4 305 1-315 88-426 (427)
38 TIGR01324 cysta_beta_ly_B cyst 100.0 3.3E-44 7.2E-49 318.6 33.5 297 1-316 75-377 (377)
39 PRK05613 O-acetylhomoserine am 100.0 2.6E-44 5.7E-49 323.5 33.2 307 1-316 94-437 (437)
40 TIGR01326 OAH_OAS_sulfhy OAH/O 100.0 5.1E-44 1.1E-48 322.7 33.3 305 1-314 82-418 (418)
41 PRK06767 methionine gamma-lyas 100.0 8.2E-44 1.8E-48 318.6 33.6 296 1-316 86-386 (386)
42 PRK07269 cystathionine gamma-s 100.0 8.4E-42 1.8E-46 302.1 31.4 281 1-314 79-363 (364)
43 PRK06434 cystathionine gamma-l 100.0 1.2E-41 2.6E-46 301.4 31.0 292 1-315 89-384 (384)
44 PRK07582 cystathionine gamma-l 100.0 2.1E-41 4.6E-46 300.8 31.9 287 1-316 75-366 (366)
45 PRK07050 cystathionine beta-ly 100.0 3.9E-41 8.4E-46 301.2 32.9 296 1-316 90-392 (394)
46 PRK08247 cystathionine gamma-s 100.0 1.1E-40 2.5E-45 296.5 32.1 285 1-316 77-365 (366)
47 PRK05968 hypothetical protein; 100.0 2.6E-40 5.7E-45 295.9 33.0 297 1-317 88-388 (389)
48 COG0436 Aspartate/tyrosine/aro 100.0 8.5E-33 1.8E-37 246.5 25.7 249 2-301 100-375 (393)
49 PRK06290 aspartate aminotransf 100.0 1.2E-30 2.5E-35 235.6 24.8 260 2-316 117-406 (410)
50 PRK07681 aspartate aminotransf 100.0 1.8E-30 4E-35 234.6 25.6 219 2-247 104-343 (399)
51 PRK06207 aspartate aminotransf 100.0 5.2E-30 1.1E-34 231.6 26.5 219 2-247 113-357 (405)
52 TIGR03540 DapC_direct LL-diami 100.0 4.2E-30 9.1E-35 231.3 25.2 218 2-246 102-340 (383)
53 PRK15481 transcriptional regul 100.0 7.5E-30 1.6E-34 232.8 26.9 217 1-247 151-385 (431)
54 PRK05957 aspartate aminotransf 100.0 9.4E-30 2E-34 229.1 27.0 219 2-247 100-339 (389)
55 PRK07324 transaminase; Validat 100.0 1.2E-29 2.6E-34 227.0 26.8 218 2-246 91-326 (373)
56 PLN00175 aminotransferase fami 100.0 1.4E-29 3E-34 229.2 26.5 219 2-247 126-365 (413)
57 PRK08068 transaminase; Reviewe 100.0 8.1E-30 1.8E-34 229.7 24.6 258 2-318 105-385 (389)
58 COG0079 HisC Histidinol-phosph 100.0 8.8E-30 1.9E-34 223.3 23.6 217 2-248 86-313 (356)
59 COG1167 ARO8 Transcriptional r 100.0 1.4E-29 3.1E-34 230.7 25.8 265 1-316 165-453 (459)
60 PRK07366 succinyldiaminopimela 100.0 9.2E-30 2E-34 229.4 23.8 216 2-246 103-344 (388)
61 PRK12414 putative aminotransfe 100.0 7.4E-29 1.6E-33 222.9 27.0 206 2-234 101-325 (384)
62 PRK08960 hypothetical protein; 100.0 8E-29 1.7E-33 223.1 27.2 218 2-246 103-340 (387)
63 COG0520 csdA Selenocysteine ly 100.0 5.2E-29 1.1E-33 221.9 25.5 274 2-318 95-404 (405)
64 PRK09276 LL-diaminopimelate am 100.0 4.2E-29 9.1E-34 224.9 25.2 218 2-246 104-342 (385)
65 TIGR03537 DapC succinyldiamino 100.0 6.3E-29 1.4E-33 220.8 25.6 218 2-248 71-310 (350)
66 PRK05942 aspartate aminotransf 100.0 5.6E-29 1.2E-33 224.5 25.3 216 2-244 108-344 (394)
67 PLN03026 histidinol-phosphate 100.0 6E-29 1.3E-33 222.9 24.7 254 2-315 114-378 (380)
68 KOG0257 Kynurenine aminotransf 100.0 1.1E-29 2.5E-34 216.2 18.8 206 2-234 104-344 (420)
69 PRK07682 hypothetical protein; 100.0 6.1E-29 1.3E-33 223.3 24.4 218 2-246 92-330 (378)
70 PRK06108 aspartate aminotransf 100.0 1.4E-28 3E-33 221.6 25.9 218 2-246 95-336 (382)
71 PRK09082 methionine aminotrans 100.0 4.8E-29 1E-33 224.4 22.7 218 2-246 102-341 (386)
72 PRK08912 hypothetical protein; 100.0 1.9E-28 4.2E-33 220.7 26.0 218 2-246 98-338 (387)
73 PRK09147 succinyldiaminopimela 100.0 1.6E-28 3.4E-33 221.9 25.3 215 2-246 101-344 (396)
74 PRK06348 aspartate aminotransf 100.0 2.5E-28 5.4E-33 219.6 25.6 218 2-246 100-339 (384)
75 PRK08636 aspartate aminotransf 100.0 3.6E-28 7.9E-33 219.8 26.8 219 1-245 105-353 (403)
76 PRK09148 aminotransferase; Val 100.0 5.1E-28 1.1E-32 218.8 26.3 208 2-235 103-330 (405)
77 PRK03158 histidinol-phosphate 100.0 2.3E-28 4.9E-33 218.2 23.5 252 2-316 92-358 (359)
78 PLN02450 1-aminocyclopropane-1 100.0 5.9E-28 1.3E-32 221.2 26.7 206 2-234 122-365 (468)
79 PRK07683 aminotransferase A; V 100.0 7.8E-28 1.7E-32 216.5 27.0 196 2-205 100-314 (387)
80 PRK01533 histidinol-phosphate 100.0 1.1E-28 2.3E-33 219.9 21.1 249 2-316 92-356 (366)
81 PRK06425 histidinol-phosphate 100.0 2.3E-28 5.1E-33 215.5 22.8 249 2-315 68-329 (332)
82 PRK07777 aminotransferase; Val 100.0 8E-28 1.7E-32 216.7 26.7 219 2-247 96-338 (387)
83 PLN02187 rooty/superroot1 100.0 5.3E-28 1.2E-32 221.1 25.4 207 2-234 142-377 (462)
84 PLN02376 1-aminocyclopropane-1 100.0 1.1E-27 2.5E-32 220.1 27.6 206 2-234 130-372 (496)
85 PRK07309 aromatic amino acid a 100.0 1.3E-27 2.8E-32 215.4 27.4 218 2-245 102-341 (391)
86 PRK07337 aminotransferase; Val 100.0 1.1E-27 2.4E-32 215.9 26.9 217 2-245 101-341 (388)
87 TIGR03538 DapC_gpp succinyldia 100.0 6.5E-28 1.4E-32 217.6 25.3 216 1-246 100-343 (393)
88 PRK08175 aminotransferase; Val 100.0 1.2E-27 2.7E-32 215.9 26.5 219 2-246 102-343 (395)
89 PRK08361 aspartate aminotransf 100.0 6.1E-28 1.3E-32 217.7 24.5 218 2-246 104-344 (391)
90 PRK08153 histidinol-phosphate 100.0 6.3E-28 1.4E-32 215.7 24.4 218 2-248 95-325 (369)
91 PRK02610 histidinol-phosphate 100.0 4.4E-28 9.4E-33 217.2 23.4 218 2-248 102-336 (374)
92 PRK02731 histidinol-phosphate 100.0 5.5E-28 1.2E-32 216.4 23.9 254 2-316 95-363 (367)
93 PLN00143 tyrosine/nicotianamin 100.0 1.1E-27 2.4E-32 216.8 25.8 205 2-234 108-343 (409)
94 PRK04781 histidinol-phosphate 100.0 1.5E-27 3.3E-32 212.8 26.2 255 2-317 87-361 (364)
95 PLN02607 1-aminocyclopropane-1 100.0 3.1E-27 6.8E-32 214.9 28.5 206 2-234 131-372 (447)
96 PLN00145 tyrosine/nicotianamin 100.0 2.2E-27 4.7E-32 215.7 27.1 205 2-234 128-363 (430)
97 PRK14807 histidinol-phosphate 100.0 1.8E-27 3.9E-32 211.5 25.8 213 2-247 87-310 (351)
98 PTZ00433 tyrosine aminotransfe 100.0 1E-27 2.3E-32 217.4 24.6 218 2-247 115-365 (412)
99 PRK07550 hypothetical protein; 100.0 2.2E-27 4.7E-32 213.8 26.4 217 2-246 101-340 (386)
100 PRK09105 putative aminotransfe 100.0 1.3E-27 2.8E-32 213.4 23.8 249 2-316 106-367 (370)
101 PRK13355 bifunctional HTH-doma 100.0 2.4E-27 5.2E-32 220.4 26.3 195 2-205 219-442 (517)
102 PRK04870 histidinol-phosphate 100.0 1E-27 2.2E-32 213.7 22.7 252 2-315 92-354 (356)
103 COG1168 MalY Bifunctional PLP- 100.0 7.4E-27 1.6E-31 197.2 26.4 259 1-315 93-386 (388)
104 TIGR01264 tyr_amTase_E tyrosin 100.0 2.5E-27 5.4E-32 214.4 24.9 217 2-246 106-355 (401)
105 PRK05764 aspartate aminotransf 100.0 5.3E-27 1.1E-31 212.0 26.4 207 2-235 102-331 (393)
106 PRK06107 aspartate aminotransf 100.0 3.4E-27 7.4E-32 213.4 24.9 206 2-234 104-333 (402)
107 PRK01688 histidinol-phosphate 100.0 9.5E-28 2.1E-32 213.1 19.9 214 2-248 85-315 (351)
108 PTZ00377 alanine aminotransfer 100.0 7.9E-27 1.7E-31 215.3 26.7 206 2-234 149-404 (481)
109 PLN02656 tyrosine transaminase 100.0 7.5E-27 1.6E-31 211.5 26.0 205 2-234 107-342 (409)
110 PRK05166 histidinol-phosphate 100.0 5.1E-27 1.1E-31 210.1 24.7 252 2-316 99-368 (371)
111 PRK05387 histidinol-phosphate 100.0 1.6E-27 3.5E-32 212.3 21.3 215 2-248 88-313 (353)
112 PRK03317 histidinol-phosphate 100.0 3.7E-27 8E-32 211.0 23.4 192 2-202 99-303 (368)
113 PRK09265 aminotransferase AlaT 100.0 1.5E-26 3.2E-31 209.5 27.1 206 2-235 106-340 (404)
114 PRK00950 histidinol-phosphate 100.0 3E-27 6.4E-32 211.3 22.3 213 2-248 98-320 (361)
115 TIGR01141 hisC histidinol-phos 100.0 3.5E-27 7.5E-32 209.6 22.4 215 2-248 82-310 (346)
116 PRK05664 threonine-phosphate d 100.0 9E-27 2E-31 205.1 24.7 246 2-319 75-328 (330)
117 PRK07865 N-succinyldiaminopime 100.0 4.5E-27 9.7E-32 210.1 23.0 212 2-247 97-324 (364)
118 PRK07568 aspartate aminotransf 100.0 1.1E-26 2.5E-31 210.1 25.8 216 2-246 99-338 (397)
119 PRK03321 putative aminotransfe 100.0 1.9E-27 4.1E-32 211.7 20.2 215 2-248 85-315 (352)
120 PRK08363 alanine aminotransfer 100.0 2E-26 4.2E-31 208.4 27.0 196 2-204 104-323 (398)
121 TIGR01265 tyr_nico_aTase tyros 100.0 2.4E-26 5.2E-31 208.0 27.1 218 1-246 106-357 (403)
122 PRK08056 threonine-phosphate d 100.0 8.8E-27 1.9E-31 207.5 23.8 213 2-248 83-313 (356)
123 TIGR03539 DapC_actino succinyl 100.0 1.2E-26 2.6E-31 206.7 23.8 212 2-247 91-318 (357)
124 PRK06358 threonine-phosphate d 100.0 1.7E-26 3.7E-31 205.3 24.3 211 2-248 82-313 (354)
125 PRK06855 aminotransferase; Val 100.0 4.4E-26 9.6E-31 207.6 27.4 207 2-235 107-345 (433)
126 PRK04635 histidinol-phosphate 100.0 9.8E-27 2.1E-31 207.0 22.0 248 2-315 88-351 (354)
127 PRK06225 aspartate aminotransf 100.0 2.7E-26 5.9E-31 206.3 25.1 263 2-317 94-378 (380)
128 PRK14809 histidinol-phosphate 100.0 1.1E-26 2.4E-31 207.1 21.4 209 2-247 93-316 (357)
129 PRK07392 threonine-phosphate d 100.0 4.3E-26 9.4E-31 203.4 25.1 209 2-245 85-313 (360)
130 PRK07590 L,L-diaminopimelate a 100.0 1.4E-26 3.1E-31 209.9 22.3 218 2-246 110-365 (409)
131 PRK10874 cysteine sulfinate de 100.0 4.7E-26 1E-30 206.2 25.1 271 2-317 92-396 (401)
132 PRK09295 bifunctional cysteine 100.0 4E-26 8.6E-31 206.9 24.4 273 2-318 96-403 (406)
133 PRK06836 aspartate aminotransf 100.0 9.7E-26 2.1E-30 203.4 26.7 215 2-248 107-350 (394)
134 TIGR01140 L_thr_O3P_dcar L-thr 99.9 5.7E-26 1.2E-30 200.1 23.9 209 2-248 75-293 (330)
135 TIGR03542 DAPAT_plant LL-diami 99.9 6.5E-26 1.4E-30 205.1 24.0 218 2-247 106-359 (402)
136 PF00155 Aminotran_1_2: Aminot 99.9 3.1E-26 6.6E-31 204.9 21.6 217 2-248 79-326 (363)
137 PRK06959 putative threonine-ph 99.9 5.6E-26 1.2E-30 200.5 22.7 206 2-248 82-295 (339)
138 PRK05839 hypothetical protein; 99.9 1.4E-25 3.1E-30 200.9 25.2 209 2-246 94-326 (374)
139 TIGR03392 FeS_syn_CsdA cystein 99.9 1.3E-25 2.9E-30 203.1 25.0 272 2-318 89-394 (398)
140 PTZ00376 aspartate aminotransf 99.9 1.1E-25 2.4E-30 203.6 24.1 190 2-199 108-339 (404)
141 PRK09275 aspartate aminotransf 99.9 8.8E-26 1.9E-30 206.2 22.7 135 2-141 172-328 (527)
142 PRK14808 histidinol-phosphate 99.9 7.3E-26 1.6E-30 199.6 19.9 208 2-248 87-302 (335)
143 PRK07908 hypothetical protein; 99.9 7.2E-25 1.6E-29 194.8 25.9 247 2-317 86-345 (349)
144 PLN02855 Bifunctional selenocy 99.9 2.1E-25 4.6E-30 203.2 23.0 279 2-318 105-417 (424)
145 PLN02368 alanine transaminase 99.9 1.4E-25 3.1E-30 201.5 21.4 196 2-205 141-386 (407)
146 TIGR03801 asp_4_decarbox aspar 99.9 4.3E-25 9.3E-30 201.4 24.6 135 2-141 166-327 (521)
147 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 7.3E-25 1.6E-29 196.0 24.8 221 2-248 77-329 (370)
148 PRK03967 histidinol-phosphate 99.9 1.4E-25 3E-30 198.1 19.8 182 2-197 83-274 (337)
149 PLN02231 alanine transaminase 99.9 1E-24 2.3E-29 201.7 26.4 196 2-205 202-446 (534)
150 TIGR00858 bioF 8-amino-7-oxono 99.9 1.3E-24 2.7E-29 194.3 26.0 257 3-313 88-359 (360)
151 COG1104 NifS Cysteine sulfinat 99.9 1.1E-24 2.4E-29 187.6 24.0 268 14-317 90-375 (386)
152 TIGR01822 2am3keto_CoA 2-amino 99.9 2.3E-24 4.9E-29 194.9 26.8 263 2-319 109-389 (393)
153 PRK09440 avtA valine--pyruvate 99.9 9E-25 2E-29 198.7 23.5 222 1-247 107-360 (416)
154 PLN02672 methionine S-methyltr 99.9 8.9E-25 1.9E-29 211.3 24.5 194 2-205 765-997 (1082)
155 PRK07179 hypothetical protein; 99.9 3.8E-24 8.2E-29 194.0 27.1 263 2-321 125-400 (407)
156 KOG0259 Tyrosine aminotransfer 99.9 3.8E-24 8.2E-29 179.8 24.6 243 2-300 137-416 (447)
157 PRK09257 aromatic amino acid a 99.9 1.9E-24 4.1E-29 195.2 24.7 208 1-234 104-354 (396)
158 TIGR01979 sufS cysteine desulf 99.9 1.1E-24 2.5E-29 197.4 23.3 276 2-318 91-400 (403)
159 PRK08637 hypothetical protein; 99.9 4.1E-24 8.8E-29 192.5 26.5 221 2-247 80-346 (388)
160 PRK08354 putative aminotransfe 99.9 3.1E-24 6.8E-29 187.5 23.2 137 2-151 65-206 (311)
161 cd06454 KBL_like KBL_like; thi 99.9 1.3E-23 2.9E-28 186.9 26.5 260 2-316 72-348 (349)
162 TIGR01977 am_tr_V_EF2568 cyste 99.9 6.3E-24 1.4E-28 190.9 23.1 277 2-315 73-375 (376)
163 cd06453 SufS_like Cysteine des 99.9 6.2E-24 1.3E-28 190.7 22.7 269 2-313 72-373 (373)
164 PRK05958 8-amino-7-oxononanoat 99.9 3.3E-23 7.1E-28 186.8 27.4 259 3-315 111-383 (385)
165 PLN02397 aspartate transaminas 99.9 2.1E-23 4.7E-28 189.3 26.1 204 5-234 132-377 (423)
166 cd06451 AGAT_like Alanine-glyo 99.9 1.8E-23 4E-28 186.5 23.9 264 2-316 61-354 (356)
167 PRK06939 2-amino-3-ketobutyrat 99.9 6.7E-23 1.5E-27 185.6 27.7 261 2-317 113-391 (397)
168 TIGR01976 am_tr_V_VC1184 cyste 99.9 1.5E-23 3.3E-28 189.7 23.5 261 12-313 101-397 (397)
169 cd00609 AAT_like Aspartate ami 99.9 4.9E-23 1.1E-27 183.1 26.1 258 2-314 70-349 (350)
170 PLN02483 serine palmitoyltrans 99.9 1.1E-22 2.3E-27 187.1 28.7 261 3-318 173-465 (489)
171 PRK02948 cysteine desulfurase; 99.9 2.1E-23 4.5E-28 187.8 23.3 281 3-318 72-373 (381)
172 PLN02651 cysteine desulfurase 99.9 1.9E-23 4.1E-28 186.7 22.1 260 11-306 84-363 (364)
173 PRK13392 5-aminolevulinate syn 99.9 5.8E-23 1.3E-27 186.4 25.5 262 3-319 118-397 (410)
174 TIGR01825 gly_Cac_T_rel pyrido 99.9 9.6E-23 2.1E-27 183.8 26.2 261 3-317 105-379 (385)
175 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 8.9E-23 1.9E-27 182.2 25.5 194 2-202 70-286 (361)
176 TIGR03403 nifS_epsilon cystein 99.9 7.2E-23 1.6E-27 184.2 24.2 278 2-317 71-373 (382)
177 PLN02409 serine--glyoxylate am 99.9 7.5E-23 1.6E-27 184.7 23.9 267 2-315 71-368 (401)
178 PF00266 Aminotran_5: Aminotra 99.9 1.9E-22 4.2E-27 180.8 24.4 266 3-309 73-371 (371)
179 TIGR02006 IscS cysteine desulf 99.9 1.9E-22 4E-27 182.6 23.8 277 3-317 76-375 (402)
180 KOG0633 Histidinol phosphate a 99.9 5E-23 1.1E-27 164.8 17.4 256 3-312 98-374 (375)
181 TIGR01821 5aminolev_synth 5-am 99.9 6.3E-22 1.4E-26 179.2 26.9 262 3-319 117-396 (402)
182 PLN02721 threonine aldolase 99.9 3.5E-22 7.6E-27 178.1 23.9 254 3-316 67-349 (353)
183 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 7.1E-22 1.5E-26 177.8 25.5 194 2-202 89-305 (387)
184 KOG0256 1-aminocyclopropane-1- 99.9 3.3E-22 7.2E-27 169.6 21.2 205 2-234 157-396 (471)
185 TIGR03402 FeS_nifS cysteine de 99.9 8.3E-22 1.8E-26 177.2 25.3 278 2-317 70-370 (379)
186 PRK09064 5-aminolevulinate syn 99.9 1.6E-21 3.4E-26 177.0 26.7 262 3-319 118-397 (407)
187 PLN02822 serine palmitoyltrans 99.9 2.2E-21 4.7E-26 178.1 26.8 264 3-317 181-475 (481)
188 cd06502 TA_like Low-specificit 99.9 5.3E-22 1.2E-26 175.8 21.5 258 2-315 58-337 (338)
189 PLN03227 serine palmitoyltrans 99.9 3.5E-21 7.6E-26 173.0 26.6 271 2-317 69-380 (392)
190 PRK13393 5-aminolevulinate syn 99.9 3.7E-21 8E-26 174.4 26.7 261 3-318 117-395 (406)
191 cd00613 GDC-P Glycine cleavage 99.9 1.5E-21 3.2E-26 176.9 23.3 255 7-313 98-398 (398)
192 KOG0634 Aromatic amino acid am 99.9 1.1E-20 2.5E-25 161.6 25.5 206 2-234 135-394 (472)
193 TIGR02326 transamin_PhnW 2-ami 99.9 3.4E-21 7.3E-26 172.3 23.6 265 2-316 65-359 (363)
194 PRK13479 2-aminoethylphosphona 99.9 1E-20 2.2E-25 169.6 25.9 265 2-318 67-362 (368)
195 PRK14012 cysteine desulfurase; 99.9 2.7E-21 5.9E-26 175.2 21.8 276 3-317 78-377 (404)
196 TIGR03301 PhnW-AepZ 2-aminoeth 99.9 1.1E-20 2.5E-25 168.5 24.4 261 2-315 61-353 (355)
197 cd00378 SHMT Serine-glycine hy 99.9 5E-21 1.1E-25 173.6 22.0 267 2-317 92-383 (402)
198 TIGR03576 pyridox_MJ0158 pyrid 99.9 1.6E-20 3.5E-25 165.6 24.4 179 2-196 82-272 (346)
199 COG0156 BioF 7-keto-8-aminopel 99.9 3.6E-20 7.7E-25 162.5 26.0 258 3-316 111-387 (388)
200 TIGR01437 selA_rel uncharacter 99.9 6.3E-21 1.4E-25 169.7 21.5 269 2-316 71-362 (363)
201 PRK13520 L-tyrosine decarboxyl 99.9 3.2E-20 7E-25 166.6 25.4 255 3-317 88-369 (371)
202 TIGR03812 tyr_de_CO2_Arch tyro 99.9 4.6E-20 9.9E-25 165.7 26.1 243 13-316 104-373 (373)
203 TIGR01814 kynureninase kynuren 99.9 1.7E-20 3.7E-25 170.0 23.0 261 2-316 97-404 (406)
204 cd00616 AHBA_syn 3-amino-5-hyd 99.9 4.9E-20 1.1E-24 164.2 22.7 280 2-314 44-352 (352)
205 TIGR03235 DNA_S_dndA cysteine 99.9 4.9E-20 1.1E-24 164.2 21.9 259 2-296 70-353 (353)
206 PRK13238 tnaA tryptophanase/L- 99.9 1E-19 2.3E-24 165.7 23.5 275 2-318 104-432 (460)
207 PRK00451 glycine dehydrogenase 99.9 6.7E-20 1.5E-24 168.2 22.1 264 3-316 141-445 (447)
208 PRK03244 argD acetylornithine 99.9 5.6E-20 1.2E-24 166.4 21.1 259 2-317 114-392 (398)
209 PRK00854 rocD ornithine--oxo-a 99.9 2.1E-19 4.5E-24 162.9 23.8 256 2-315 109-397 (401)
210 PRK00011 glyA serine hydroxyme 99.9 2.1E-19 4.6E-24 163.5 23.5 221 2-248 98-336 (416)
211 PRK04073 rocD ornithine--oxo-a 99.8 1.8E-19 3.9E-24 162.7 21.1 244 16-316 132-394 (396)
212 KOG1549 Cysteine desulfurase N 99.8 7.1E-20 1.5E-24 158.6 16.9 133 2-140 113-257 (428)
213 PLN02955 8-amino-7-oxononanoat 99.8 1.9E-18 4.1E-23 155.1 25.9 249 13-319 198-461 (476)
214 cd00610 OAT_like Acetyl ornith 99.8 1.7E-19 3.7E-24 164.2 18.6 261 2-315 107-411 (413)
215 PRK13580 serine hydroxymethylt 99.8 1.3E-18 2.9E-23 156.2 23.5 252 15-317 166-443 (493)
216 TIGR00707 argD acetylornithine 99.8 7.2E-19 1.6E-23 158.3 21.7 245 14-315 114-377 (379)
217 TIGR03588 PseC UDP-4-keto-6-de 99.8 9.9E-19 2.1E-23 157.2 22.2 279 2-316 55-379 (380)
218 cd06450 DOPA_deC_like DOPA dec 99.8 1.9E-19 4.2E-24 159.9 17.0 222 16-315 96-344 (345)
219 TIGR02379 ECA_wecE TDP-4-keto- 99.8 2.9E-18 6.2E-23 153.1 24.4 282 2-316 57-374 (376)
220 PRK11658 UDP-4-amino-4-deoxy-L 99.8 2.1E-18 4.5E-23 154.7 23.3 278 2-316 59-376 (379)
221 cd00617 Tnase_like Tryptophana 99.8 2.9E-18 6.3E-23 154.2 23.7 274 2-318 79-407 (431)
222 PTZ00094 serine hydroxymethylt 99.8 1E-18 2.2E-23 160.0 21.1 269 3-318 112-407 (452)
223 PRK01278 argD acetylornithine 99.8 9.8E-19 2.1E-23 157.7 20.6 223 3-248 100-349 (389)
224 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.8 1.5E-17 3.2E-22 149.1 27.7 282 2-316 57-373 (375)
225 PLN02724 Molybdenum cofactor s 99.8 1.3E-18 2.8E-23 169.1 22.1 289 2-316 108-485 (805)
226 PRK10534 L-threonine aldolase; 99.8 1.8E-18 4E-23 152.8 21.1 213 3-248 61-296 (333)
227 PRK02627 acetylornithine amino 99.8 6.5E-19 1.4E-23 159.4 18.4 223 2-248 107-355 (396)
228 PRK04366 glycine dehydrogenase 99.8 3.9E-18 8.4E-23 157.0 22.5 255 11-318 153-447 (481)
229 PRK13034 serine hydroxymethylt 99.8 1.6E-17 3.5E-22 150.4 23.5 266 1-316 100-389 (416)
230 COG0075 Serine-pyruvate aminot 99.8 4.1E-17 8.9E-22 142.0 24.8 197 2-203 67-290 (383)
231 TIGR00474 selA seryl-tRNA(sec) 99.8 1.2E-18 2.5E-23 157.6 15.2 190 1-197 147-371 (454)
232 PRK05093 argD bifunctional N-s 99.8 1E-17 2.2E-22 151.7 20.6 210 15-248 129-361 (403)
233 PRK05937 8-amino-7-oxononanoat 99.8 6E-17 1.3E-21 145.0 25.4 248 4-318 84-349 (370)
234 cd00615 Orn_deC_like Ornithine 99.8 1.1E-18 2.4E-23 151.2 13.0 131 2-140 86-235 (294)
235 PTZ00125 ornithine aminotransf 99.8 2.9E-17 6.3E-22 148.8 22.2 214 14-248 121-356 (400)
236 PRK02936 argD acetylornithine 99.8 1.6E-17 3.5E-22 149.3 19.5 221 2-248 97-340 (377)
237 PRK04311 selenocysteine syntha 99.8 7E-18 1.5E-22 153.0 15.3 190 2-198 153-377 (464)
238 PLN02271 serine hydroxymethylt 99.8 1.2E-16 2.6E-21 144.4 22.1 220 2-248 225-491 (586)
239 PLN02414 glycine dehydrogenase 99.8 8E-17 1.7E-21 156.2 22.3 266 3-318 599-906 (993)
240 TIGR03246 arg_catab_astC succi 99.8 6.4E-17 1.4E-21 146.0 19.8 248 15-316 124-392 (397)
241 COG0399 WecE Predicted pyridox 99.8 1.5E-16 3.3E-21 138.7 21.3 280 2-317 60-371 (374)
242 PRK07505 hypothetical protein; 99.8 8.5E-16 1.8E-20 139.2 26.2 128 17-151 136-276 (402)
243 PF01041 DegT_DnrJ_EryC1: DegT 99.8 6E-17 1.3E-21 144.5 18.2 277 2-314 51-363 (363)
244 PF06838 Met_gamma_lyase: Meth 99.8 4.7E-16 1E-20 131.6 21.8 232 2-252 83-336 (403)
245 PRK15407 lipopolysaccharide bi 99.7 1.9E-15 4.2E-20 137.2 26.4 182 3-198 90-329 (438)
246 PRK12381 bifunctional succinyl 99.7 1.8E-16 4E-21 143.5 19.3 212 14-248 127-360 (406)
247 PRK04260 acetylornithine amino 99.7 3.7E-16 7.9E-21 140.3 20.8 243 13-315 108-373 (375)
248 KOG1360 5-aminolevulinate synt 99.7 5.7E-16 1.2E-20 131.5 20.4 250 14-318 256-523 (570)
249 COG4992 ArgD Ornithine/acetylo 99.7 1.1E-16 2.5E-21 138.1 16.2 260 2-317 111-400 (404)
250 PRK02769 histidine decarboxyla 99.7 7.9E-16 1.7E-20 137.0 22.1 181 13-201 108-315 (380)
251 COG3977 Alanine-alpha-ketoisov 99.7 9.4E-16 2E-20 125.7 19.6 222 51-316 170-412 (417)
252 COG1103 Archaea-specific pyrid 99.7 7.6E-15 1.7E-19 118.8 24.3 190 3-199 88-300 (382)
253 PRK03080 phosphoserine aminotr 99.7 8.5E-16 1.8E-20 137.8 20.7 258 2-318 78-372 (378)
254 TIGR01885 Orn_aminotrans ornit 99.7 1.1E-15 2.3E-20 138.5 21.4 247 15-315 128-398 (401)
255 PRK05355 3-phosphoserine/phosp 99.7 7.2E-16 1.6E-20 136.9 19.4 256 2-319 78-358 (360)
256 PF00464 SHMT: Serine hydroxym 99.7 6.2E-16 1.3E-20 136.2 17.7 222 2-248 97-356 (399)
257 COG0112 GlyA Glycine/serine hy 99.7 4.1E-15 8.9E-20 126.9 21.8 220 2-248 99-340 (413)
258 cd00611 PSAT_like Phosphoserin 99.7 5.3E-16 1.2E-20 138.0 16.9 254 2-317 74-354 (355)
259 cd01494 AAT_I Aspartate aminot 99.7 2.2E-16 4.8E-21 125.5 13.0 130 2-139 28-170 (170)
260 COG4100 Cystathionine beta-lya 99.7 4.1E-15 8.9E-20 122.0 20.2 295 2-316 94-414 (416)
261 PLN03226 serine hydroxymethylt 99.7 1.3E-14 2.7E-19 132.8 25.8 194 3-205 112-341 (475)
262 TIGR01364 serC_1 phosphoserine 99.7 2.4E-15 5.2E-20 132.9 19.8 255 2-318 67-347 (349)
263 PLN00144 acetylornithine trans 99.7 2.6E-15 5.6E-20 134.6 20.2 129 16-148 112-259 (382)
264 KOG1359 Glycine C-acetyltransf 99.7 1E-15 2.3E-20 125.1 15.8 251 7-316 143-409 (417)
265 PRK05367 glycine dehydrogenase 99.7 2.8E-15 6.1E-20 146.1 21.5 247 4-314 151-437 (954)
266 TIGR01366 serC_3 phosphoserine 99.7 1.6E-15 3.4E-20 135.0 18.0 263 3-318 72-359 (361)
267 PRK04612 argD acetylornithine 99.7 3.7E-15 8.1E-20 134.4 20.2 212 16-248 132-364 (408)
268 PRK08088 4-aminobutyrate amino 99.7 9.7E-15 2.1E-19 133.0 21.7 97 52-150 184-293 (425)
269 KOG2862 Alanine-glyoxylate ami 99.7 3.7E-14 7.9E-19 117.0 22.1 194 2-200 79-304 (385)
270 TIGR00713 hemL glutamate-1-sem 99.7 4.5E-15 9.8E-20 135.4 18.8 141 3-148 116-286 (423)
271 TIGR01788 Glu-decarb-GAD gluta 99.7 2E-14 4.3E-19 129.8 22.5 206 16-248 139-383 (431)
272 PLN03032 serine decarboxylase; 99.7 1.5E-14 3.2E-19 128.0 20.5 181 14-201 110-318 (374)
273 PLN02624 ornithine-delta-amino 99.7 1.1E-14 2.4E-19 133.9 20.2 246 17-315 168-440 (474)
274 COG1448 TyrB Aspartate/tyrosin 99.6 6.5E-14 1.4E-18 119.3 21.8 183 12-199 117-334 (396)
275 TIGR03531 selenium_SpcS O-phos 99.6 2E-14 4.3E-19 129.3 19.6 184 3-198 136-345 (444)
276 TIGR03372 putres_am_tran putre 99.6 3E-14 6.6E-19 129.2 20.7 250 16-315 164-440 (442)
277 TIGR02407 ectoine_ectB diamino 99.6 1.9E-14 4.1E-19 130.3 19.2 251 15-316 125-409 (412)
278 PLN02414 glycine dehydrogenase 99.6 2.7E-14 5.9E-19 138.9 20.8 250 3-316 177-466 (993)
279 PRK03715 argD acetylornithine 99.6 4.8E-14 1E-18 126.9 21.0 245 16-316 125-390 (395)
280 PF12897 Aminotran_MocR: Alani 99.6 1.9E-13 4.2E-18 116.7 22.2 241 16-308 125-405 (425)
281 PRK11522 putrescine--2-oxoglut 99.6 5.5E-14 1.2E-18 128.3 19.8 214 16-248 171-410 (459)
282 PRK06777 4-aminobutyrate amino 99.6 6.7E-14 1.5E-18 127.0 19.5 140 52-197 183-337 (421)
283 PRK09792 4-aminobutyrate trans 99.6 2.3E-14 5E-19 130.1 16.1 213 52-315 183-417 (421)
284 COG0001 HemL Glutamate-1-semia 99.6 8.2E-14 1.8E-18 121.8 17.7 188 9-201 130-350 (432)
285 TIGR00700 GABAtrnsam 4-aminobu 99.6 5.9E-14 1.3E-18 127.6 17.6 94 52-149 182-290 (420)
286 TIGR02618 tyr_phenol_ly tyrosi 99.6 5.4E-13 1.2E-17 118.7 23.1 274 3-318 98-425 (450)
287 PRK09264 diaminobutyrate--2-ox 99.6 3.2E-13 7E-18 122.8 22.2 214 15-248 129-375 (425)
288 PRK06058 4-aminobutyrate amino 99.6 3.1E-13 6.6E-18 123.6 21.7 208 55-315 211-438 (443)
289 PRK08360 4-aminobutyrate amino 99.6 8.7E-14 1.9E-18 126.8 17.7 162 52-234 189-365 (443)
290 PRK05367 glycine dehydrogenase 99.6 3.3E-13 7.2E-18 131.8 22.7 258 12-318 583-874 (954)
291 PRK05964 adenosylmethionine--8 99.6 3.4E-13 7.3E-18 122.8 21.5 250 16-317 135-420 (423)
292 PRK08117 4-aminobutyrate amino 99.6 1E-13 2.3E-18 126.5 17.5 176 51-247 191-387 (433)
293 TIGR00461 gcvP glycine dehydro 99.6 3.2E-13 7E-18 130.0 21.2 182 15-204 578-791 (939)
294 PF01276 OKR_DC_1: Orn/Lys/Arg 99.6 2.9E-14 6.2E-19 126.3 12.9 184 2-196 93-316 (417)
295 COG0160 GabT 4-aminobutyrate a 99.6 1.8E-13 4E-18 121.7 17.4 201 62-314 221-440 (447)
296 PLN02880 tyrosine decarboxylas 99.6 6.5E-13 1.4E-17 122.2 21.6 191 17-234 183-418 (490)
297 KOG1402 Ornithine aminotransfe 99.6 4.1E-13 8.8E-18 111.7 17.4 184 31-234 176-370 (427)
298 PRK00062 glutamate-1-semialdeh 99.6 1.4E-13 3E-18 125.3 16.0 141 3-147 118-287 (426)
299 TIGR03799 NOD_PanD_pyr putativ 99.6 2.1E-12 4.6E-17 119.1 23.9 183 15-204 209-427 (522)
300 PRK12566 glycine dehydrogenase 99.5 1.3E-12 2.8E-17 125.2 22.0 256 16-319 592-876 (954)
301 COG2008 GLY1 Threonine aldolas 99.5 3E-12 6.6E-17 108.8 21.1 249 2-316 61-340 (342)
302 PRK07495 4-aminobutyrate amino 99.5 1.2E-12 2.7E-17 118.7 19.3 162 52-234 183-359 (425)
303 PRK13237 tyrosine phenol-lyase 99.5 1.2E-11 2.7E-16 110.4 24.7 274 3-318 105-432 (460)
304 PLN02590 probable tyrosine dec 99.5 6.7E-12 1.5E-16 115.8 23.6 182 17-204 231-455 (539)
305 PRK08593 4-aminobutyrate amino 99.5 1.7E-12 3.7E-17 118.5 18.1 150 62-234 206-368 (445)
306 KOG1368 Threonine aldolase [Am 99.5 2.1E-12 4.5E-17 106.2 16.4 250 5-313 85-362 (384)
307 PLN02263 serine decarboxylase 99.5 1.2E-11 2.6E-16 111.4 22.9 180 14-200 177-384 (470)
308 PRK06918 4-aminobutyrate amino 99.5 1.9E-12 4.1E-17 118.7 18.1 84 62-149 218-312 (451)
309 PRK06541 hypothetical protein; 99.5 4.9E-12 1.1E-16 115.8 19.4 162 53-234 208-386 (460)
310 COG3844 Kynureninase [Amino ac 99.5 7.6E-12 1.6E-16 104.2 18.4 250 13-317 117-404 (407)
311 TIGR00709 dat 2,4-diaminobutyr 99.5 9.8E-12 2.1E-16 113.6 20.9 149 62-234 205-366 (442)
312 COG0076 GadB Glutamate decarbo 99.5 3.2E-12 6.9E-17 115.9 16.5 193 17-235 159-381 (460)
313 PRK15029 arginine decarboxylas 99.4 3.6E-12 7.8E-17 121.0 16.8 186 2-198 232-465 (755)
314 PLN02760 4-aminobutyrate:pyruv 99.4 3.8E-12 8.2E-17 117.5 16.5 161 53-234 247-428 (504)
315 PRK07678 aminotransferase; Val 99.4 8.2E-12 1.8E-16 114.2 18.2 217 54-316 201-446 (451)
316 PRK05965 hypothetical protein; 99.4 5.8E-12 1.3E-16 115.4 16.5 216 53-321 202-453 (459)
317 PRK05769 4-aminobutyrate amino 99.4 5.4E-12 1.2E-16 115.1 15.7 199 62-316 220-436 (441)
318 PRK06938 diaminobutyrate--2-ox 99.4 3.7E-11 8.1E-16 110.1 21.2 159 52-234 215-391 (464)
319 PLN02482 glutamate-1-semialdeh 99.4 6.2E-12 1.3E-16 115.1 16.1 178 15-198 181-388 (474)
320 TIGR00461 gcvP glycine dehydro 99.4 3.1E-11 6.8E-16 116.5 21.4 238 14-314 152-426 (939)
321 COG0403 GcvP Glycine cleavage 99.4 8.5E-11 1.8E-15 101.7 21.5 245 14-316 163-447 (450)
322 PRK12403 putative aminotransfe 99.4 8.1E-11 1.7E-15 108.0 22.3 161 53-234 209-389 (460)
323 PRK06062 hypothetical protein; 99.4 1E-11 2.2E-16 113.6 16.2 92 52-147 200-306 (451)
324 PRK04013 argD acetylornithine/ 99.4 4.3E-11 9.3E-16 106.2 19.6 133 3-142 93-247 (364)
325 PRK12389 glutamate-1-semialdeh 99.4 5E-11 1.1E-15 108.6 20.2 176 15-196 135-340 (428)
326 PRK05639 4-aminobutyrate amino 99.4 2.2E-11 4.8E-16 111.4 17.8 162 62-247 221-401 (457)
327 PRK06105 aminotransferase; Pro 99.4 2.5E-11 5.4E-16 111.3 17.9 162 52-234 204-386 (460)
328 PRK07481 hypothetical protein; 99.4 3.5E-11 7.5E-16 110.1 18.7 152 62-234 212-382 (449)
329 TIGR03251 LAT_fam L-lysine 6-t 99.4 2.5E-11 5.5E-16 110.6 17.0 208 52-315 205-430 (431)
330 PRK13360 omega amino acid--pyr 99.4 3.8E-11 8.2E-16 109.6 17.5 211 52-316 201-437 (442)
331 PRK07046 aminotransferase; Val 99.4 7.4E-11 1.6E-15 107.8 19.3 130 15-148 156-308 (453)
332 PRK07986 adenosylmethionine--8 99.4 2.2E-11 4.8E-16 110.5 15.6 214 51-319 190-423 (428)
333 KOG1357 Serine palmitoyltransf 99.4 4.7E-12 1E-16 109.7 10.5 256 7-317 213-500 (519)
334 PF01212 Beta_elim_lyase: Beta 99.4 2.8E-12 6.1E-17 109.8 8.6 194 3-205 56-278 (290)
335 PRK07482 hypothetical protein; 99.3 2.9E-11 6.2E-16 110.9 15.7 162 52-234 206-389 (461)
336 TIGR01365 serC_2 phosphoserine 99.3 1.6E-10 3.4E-15 102.5 19.8 185 2-202 69-288 (374)
337 PRK09221 beta alanine--pyruvat 99.3 7.3E-11 1.6E-15 107.8 18.0 210 53-316 205-440 (445)
338 PRK05630 adenosylmethionine--8 99.3 4.8E-11 1E-15 108.2 16.6 208 53-316 191-417 (422)
339 PRK06173 adenosylmethionine--8 99.3 7.5E-11 1.6E-15 107.1 17.4 176 51-248 192-387 (429)
340 PRK06943 adenosylmethionine--8 99.3 5.9E-11 1.3E-15 108.6 16.8 161 52-234 208-389 (453)
341 PRK06082 4-aminobutyrate amino 99.3 9E-11 1.9E-15 107.5 17.8 160 53-234 218-390 (459)
342 PRK06917 hypothetical protein; 99.3 1.3E-10 2.8E-15 106.3 18.5 162 52-234 185-366 (447)
343 TIGR00508 bioA adenosylmethion 99.3 8.9E-11 1.9E-15 106.8 17.2 211 51-316 193-423 (427)
344 PF02347 GDC-P: Glycine cleava 99.3 1.4E-10 3.1E-15 102.9 17.4 187 3-197 142-364 (429)
345 PRK13578 ornithine decarboxyla 99.3 4.1E-11 8.8E-16 112.9 14.7 128 2-138 201-368 (720)
346 PF00282 Pyridoxal_deC: Pyrido 99.3 2.4E-11 5.2E-16 108.3 12.6 181 17-203 143-361 (373)
347 PRK06916 adenosylmethionine--8 99.3 4.7E-11 1E-15 109.5 14.4 161 52-234 210-392 (460)
348 PLN02452 phosphoserine transam 99.3 2.5E-10 5.5E-15 101.2 18.3 254 3-319 83-363 (365)
349 PRK06148 hypothetical protein; 99.3 1.2E-10 2.6E-15 116.1 17.8 202 62-315 783-1006(1013)
350 PRK00615 glutamate-1-semialdeh 99.3 2.2E-10 4.7E-15 104.1 18.1 97 48-148 184-292 (433)
351 PRK08297 L-lysine aminotransfe 99.3 8.5E-11 1.8E-15 107.3 15.4 208 52-316 212-438 (443)
352 KOG0258 Alanine aminotransfera 99.3 4.3E-10 9.4E-15 95.9 18.3 194 3-204 148-390 (475)
353 PRK06149 hypothetical protein; 99.3 1.3E-10 2.7E-15 115.8 17.7 165 62-248 743-929 (972)
354 TIGR00699 GABAtrns_euk 4-amino 99.3 6.7E-11 1.4E-15 107.8 14.4 207 51-315 237-462 (464)
355 PRK07483 hypothetical protein; 99.3 2.3E-10 5E-15 104.5 17.1 161 53-234 186-366 (443)
356 COG1921 SelA Selenocysteine sy 99.3 1.9E-10 4E-15 99.9 15.2 139 2-151 94-248 (395)
357 PRK07480 putative aminotransfe 99.3 2.3E-10 5.1E-15 104.7 16.5 160 53-234 206-385 (456)
358 PRK07036 hypothetical protein; 99.3 4E-10 8.7E-15 103.5 18.0 160 53-234 207-389 (466)
359 KOG2467 Glycine/serine hydroxy 99.3 2E-09 4.4E-14 91.2 20.3 220 3-248 118-377 (477)
360 PRK06931 diaminobutyrate--2-ox 99.3 2.5E-10 5.4E-15 104.6 16.1 149 62-234 224-385 (459)
361 PRK07030 adenosylmethionine--8 99.3 3.3E-10 7.1E-15 104.0 16.8 161 52-234 201-383 (466)
362 PRK08742 adenosylmethionine--8 99.2 2.8E-10 6E-15 104.4 15.9 92 52-147 223-329 (472)
363 KOG1412 Aspartate aminotransfe 99.2 4E-09 8.7E-14 87.6 20.2 212 15-248 125-374 (410)
364 PRK12462 phosphoserine aminotr 99.2 6.8E-09 1.5E-13 91.3 21.2 255 3-319 80-362 (364)
365 PF00202 Aminotran_3: Aminotra 99.2 1.4E-10 3E-15 102.5 10.6 129 15-149 108-270 (339)
366 COG0161 BioA Adenosylmethionin 99.2 8.7E-10 1.9E-14 98.0 14.4 163 52-234 200-382 (449)
367 KOG1401 Acetylornithine aminot 99.2 4.4E-09 9.6E-14 90.6 18.0 130 17-151 150-301 (433)
368 PF04864 Alliinase_C: Allinase 99.2 1.3E-10 2.8E-15 98.3 8.3 249 16-315 97-361 (363)
369 COG1003 GcvP Glycine cleavage 99.1 4.4E-09 9.6E-14 91.3 17.1 106 16-128 158-272 (496)
370 PRK15400 lysine decarboxylase 99.1 1.4E-09 3.1E-14 102.5 14.2 125 2-136 222-378 (714)
371 PF03841 SelA: L-seryl-tRNA se 99.1 1.6E-10 3.4E-15 99.6 6.4 141 2-149 73-236 (367)
372 KOG1404 Alanine-glyoxylate ami 99.1 5.2E-09 1.1E-13 89.6 15.5 155 62-234 211-374 (442)
373 PRK12566 glycine dehydrogenase 99.1 1.6E-08 3.4E-13 97.7 20.5 174 15-201 168-379 (954)
374 COG1982 LdcC Arginine/lysine/o 99.1 2.9E-08 6.2E-13 90.4 20.7 193 2-205 97-321 (557)
375 PLN02974 adenosylmethionine-8- 99.1 9.9E-09 2.2E-13 99.3 17.8 91 53-147 567-677 (817)
376 PRK15399 lysine decarboxylase 99.0 1E-08 2.2E-13 96.8 17.0 183 2-198 222-443 (713)
377 PRK06209 glutamate-1-semialdeh 99.0 1.3E-08 2.8E-13 92.9 15.4 95 47-145 169-271 (431)
378 KOG1358 Serine palmitoyltransf 99.0 5.2E-08 1.1E-12 83.6 15.8 129 2-140 165-317 (467)
379 KOG1383 Glutamate decarboxylas 98.9 8.8E-08 1.9E-12 84.1 16.1 249 17-321 172-452 (491)
380 TIGR02617 tnaA_trp_ase tryptop 98.9 1.5E-07 3.1E-12 83.8 17.6 233 51-319 168-441 (467)
381 KOG1411 Aspartate aminotransfe 98.8 2.1E-07 4.6E-12 78.6 15.2 216 10-247 141-393 (427)
382 TIGR03811 tyr_de_CO2_Ent tyros 98.8 2.1E-07 4.6E-12 87.2 17.1 177 17-199 224-477 (608)
383 KOG1405 4-aminobutyrate aminot 98.7 1.4E-06 3.1E-11 74.0 15.5 180 52-262 255-452 (484)
384 COG3033 TnaA Tryptophanase [Am 98.5 1.3E-05 2.9E-10 68.4 17.0 233 51-318 170-443 (471)
385 KOG0629 Glutamate decarboxylas 98.5 2.6E-06 5.6E-11 74.2 11.7 175 19-199 201-415 (510)
386 KOG1403 Predicted alanine-glyo 98.3 8.3E-06 1.8E-10 68.0 11.5 218 53-318 194-440 (452)
387 KOG0628 Aromatic-L-amino-acid/ 98.3 2.6E-05 5.7E-10 68.7 15.2 206 18-248 185-427 (511)
388 KOG2040 Glycine dehydrogenase 98.3 3.7E-05 8.1E-10 70.5 15.2 184 7-197 617-836 (1001)
389 PF05889 SLA_LP_auto_ag: Solub 98.2 9.2E-06 2E-10 71.1 8.4 140 5-151 89-250 (389)
390 COG1932 SerC Phosphoserine ami 98.1 0.00023 4.9E-09 61.5 16.2 203 61-318 142-362 (365)
391 KOG2040 Glycine dehydrogenase 98.1 0.002 4.3E-08 59.6 21.5 106 12-124 202-309 (1001)
392 KOG3846 L-kynurenine hydrolase 97.8 0.0028 6E-08 53.5 16.3 136 4-140 141-293 (465)
393 KOG3843 Predicted serine hydro 95.7 0.066 1.4E-06 44.5 7.9 154 40-199 123-302 (432)
394 KOG2790 Phosphoserine aminotra 94.7 1.7 3.6E-05 36.9 13.1 243 16-318 101-367 (370)
395 PF02310 B12-binding: B12 bind 82.7 7.2 0.00016 28.4 6.9 72 28-102 16-90 (121)
396 COG0296 GlgB 1,4-alpha-glucan 80.4 1.8 3.8E-05 41.4 3.4 40 68-107 202-241 (628)
397 PF05368 NmrA: NmrA-like famil 79.4 12 0.00025 31.0 7.8 84 7-97 14-98 (233)
398 COG0552 FtsY Signal recognitio 78.8 6.8 0.00015 34.3 6.1 122 9-137 161-304 (340)
399 COG1066 Sms Predicted ATP-depe 77.2 24 0.00051 32.1 9.1 83 12-98 118-215 (456)
400 KOG4589 Cell division protein 71.5 32 0.00069 27.6 7.6 81 11-91 66-165 (232)
401 PF07085 DRTGG: DRTGG domain; 67.8 41 0.00089 23.8 7.3 68 17-98 23-90 (105)
402 COG0616 SppA Periplasmic serin 66.0 51 0.0011 29.0 8.8 81 61-150 95-181 (317)
403 TIGR02026 BchE magnesium-proto 65.4 21 0.00046 33.5 6.7 61 40-103 35-102 (497)
404 COG0352 ThiE Thiamine monophos 65.2 22 0.00048 29.1 5.9 95 52-149 24-123 (211)
405 PRK05678 succinyl-CoA syntheta 65.1 27 0.00058 30.3 6.7 76 20-102 49-125 (291)
406 cd02067 B12-binding B12 bindin 64.7 42 0.0009 24.3 7.0 64 34-100 21-88 (119)
407 CHL00200 trpA tryptophan synth 64.3 63 0.0014 27.5 8.7 37 51-93 132-168 (263)
408 cd01121 Sms Sms (bacterial rad 63.9 72 0.0016 28.8 9.5 52 47-98 142-205 (372)
409 cd00532 MGS-like MGS-like doma 62.8 55 0.0012 23.6 7.8 84 8-100 18-106 (112)
410 TIGR00160 MGSA methylglyoxal s 62.4 21 0.00045 27.1 4.8 62 40-101 47-112 (143)
411 cd02068 radical_SAM_B12_BD B12 62.2 50 0.0011 24.3 7.1 60 40-102 15-77 (127)
412 PRK13111 trpA tryptophan synth 61.1 83 0.0018 26.7 8.9 36 51-92 130-165 (258)
413 COG2870 RfaE ADP-heptose synth 60.3 20 0.00042 32.4 5.0 49 51-101 129-179 (467)
414 COG0108 RibB 3,4-dihydroxy-2-b 59.8 19 0.00042 29.0 4.5 36 62-98 155-190 (203)
415 PRK12724 flagellar biosynthesi 59.2 59 0.0013 29.9 8.0 88 12-102 249-344 (432)
416 PF03652 UPF0081: Uncharacteri 59.1 30 0.00065 26.1 5.3 53 50-102 38-97 (135)
417 PLN00191 enolase 57.5 71 0.0015 29.7 8.4 87 11-100 307-395 (457)
418 KOG2741 Dimeric dihydrodiol de 57.5 25 0.00053 31.0 5.1 25 80-105 110-134 (351)
419 TIGR01019 sucCoAalpha succinyl 57.4 43 0.00093 28.9 6.6 78 17-101 44-122 (286)
420 COG2984 ABC-type uncharacteriz 56.2 76 0.0016 27.8 7.8 81 16-101 160-247 (322)
421 smart00642 Aamy Alpha-amylase 56.2 11 0.00024 29.5 2.7 27 76-102 66-92 (166)
422 cd01018 ZntC Metal binding pro 55.9 78 0.0017 26.9 8.0 70 14-98 169-245 (266)
423 PRK05234 mgsA methylglyoxal sy 55.6 47 0.001 25.3 5.9 59 41-99 50-112 (142)
424 COG0159 TrpA Tryptophan syntha 55.4 1.2E+02 0.0026 25.9 8.7 91 51-151 135-228 (265)
425 cd01017 AdcA Metal binding pro 54.4 73 0.0016 27.3 7.7 69 14-97 170-247 (282)
426 PF02603 Hpr_kinase_N: HPr Ser 54.3 22 0.00047 26.5 3.9 39 54-99 73-111 (127)
427 PRK02261 methylaspartate mutas 54.3 92 0.002 23.5 8.1 56 34-92 25-81 (137)
428 PF08821 CGGC: CGGC domain; I 54.1 42 0.00091 24.2 5.1 47 51-97 53-103 (107)
429 TIGR01501 MthylAspMutase methy 53.7 53 0.0012 24.7 5.8 60 31-93 20-80 (134)
430 cd01137 PsaA Metal binding pro 52.6 79 0.0017 27.3 7.6 68 14-96 176-252 (287)
431 TIGR01305 GMP_reduct_1 guanosi 52.5 98 0.0021 27.4 7.9 78 41-119 150-240 (343)
432 PLN02591 tryptophan synthase 52.5 1.4E+02 0.0031 25.2 9.3 23 53-75 121-143 (250)
433 PRK04296 thymidine kinase; Pro 52.2 54 0.0012 26.2 6.2 87 11-101 26-114 (190)
434 TIGR00640 acid_CoA_mut_C methy 52.1 91 0.002 23.4 6.9 73 24-99 14-90 (132)
435 TIGR00416 sms DNA repair prote 50.4 1.1E+02 0.0023 28.6 8.4 52 47-98 154-217 (454)
436 PLN02654 acetate-CoA ligase 50.4 1.4E+02 0.003 29.3 9.8 79 7-87 136-216 (666)
437 PTZ00081 enolase; Provisional 50.3 91 0.002 28.9 7.9 85 12-99 294-382 (439)
438 PF13460 NAD_binding_10: NADH( 50.2 1.2E+02 0.0026 23.6 7.9 77 7-94 14-90 (183)
439 COG1088 RfbB dTDP-D-glucose 4, 50.1 83 0.0018 27.4 6.9 110 18-128 30-173 (340)
440 PRK12723 flagellar biosynthesi 49.7 1.1E+02 0.0024 27.7 8.3 86 14-102 205-297 (388)
441 PLN02522 ATP citrate (pro-S)-l 49.6 81 0.0018 30.5 7.6 76 21-101 62-138 (608)
442 PRK07377 hypothetical protein; 49.4 77 0.0017 25.1 6.2 46 23-69 90-135 (184)
443 smart00481 POLIIIAc DNA polyme 49.2 65 0.0014 20.5 5.1 43 51-97 16-58 (67)
444 PF14871 GHL6: Hypothetical gl 49.2 60 0.0013 24.4 5.5 17 82-98 46-62 (132)
445 cd02072 Glm_B12_BD B12 binding 47.9 78 0.0017 23.6 5.9 59 32-93 19-78 (128)
446 COG0074 SucD Succinyl-CoA synt 47.5 1.4E+02 0.003 25.7 7.8 81 14-101 43-124 (293)
447 TIGR02104 pulA_typeI pullulana 47.0 13 0.00029 35.8 2.2 26 79-104 228-253 (605)
448 PLN03244 alpha-amylase; Provis 47.0 21 0.00045 35.4 3.3 36 72-107 433-468 (872)
449 TIGR01060 eno phosphopyruvate 46.4 1E+02 0.0022 28.4 7.6 84 12-98 275-362 (425)
450 PF01297 TroA: Periplasmic sol 46.2 94 0.002 26.1 7.0 70 14-98 149-227 (256)
451 COG0816 Predicted endonuclease 44.8 78 0.0017 24.1 5.5 52 51-102 41-98 (141)
452 PRK13601 putative L7Ae-like ri 44.7 50 0.0011 22.4 4.1 46 52-101 13-58 (82)
453 cd02070 corrinoid_protein_B12- 44.7 1.7E+02 0.0036 23.7 8.2 102 15-121 82-192 (201)
454 PF00128 Alpha-amylase: Alpha 44.7 16 0.00035 31.4 2.2 28 75-102 47-74 (316)
455 TIGR02188 Ac_CoA_lig_AcsA acet 44.6 2.5E+02 0.0054 27.1 10.5 73 12-86 110-183 (625)
456 PF00113 Enolase_C: Enolase, C 44.5 51 0.0011 28.6 5.1 81 17-100 151-235 (295)
457 PTZ00187 succinyl-CoA syntheta 44.4 77 0.0017 27.8 6.2 74 21-101 73-148 (317)
458 TIGR02402 trehalose_TreZ malto 44.3 21 0.00045 34.0 3.0 26 80-105 160-185 (542)
459 PLN02589 caffeoyl-CoA O-methyl 44.2 1.6E+02 0.0034 24.9 7.9 42 62-106 155-197 (247)
460 PRK09441 cytoplasmic alpha-amy 44.0 20 0.00044 33.5 2.8 30 73-102 74-103 (479)
461 PRK06731 flhF flagellar biosyn 43.7 2.1E+02 0.0045 24.5 8.9 81 19-102 109-196 (270)
462 PRK00109 Holliday junction res 43.7 85 0.0018 23.7 5.7 53 51-103 42-100 (138)
463 PRK13602 putative ribosomal pr 43.4 77 0.0017 21.5 4.9 46 52-101 16-61 (82)
464 TIGR00250 RNAse_H_YqgF RNAse H 43.4 74 0.0016 23.7 5.3 53 51-103 36-94 (130)
465 KOG3974 Predicted sugar kinase 43.2 68 0.0015 27.2 5.3 48 52-101 92-140 (306)
466 cd05013 SIS_RpiR RpiR-like pro 43.2 1.3E+02 0.0028 21.9 8.5 84 6-97 5-91 (139)
467 cd04736 MDH_FMN Mandelate dehy 42.7 96 0.0021 27.8 6.6 77 41-118 236-316 (361)
468 cd07018 S49_SppA_67K_type Sign 42.5 1.7E+02 0.0037 24.0 7.9 36 61-97 44-82 (222)
469 PF02581 TMP-TENI: Thiamine mo 42.4 37 0.0008 26.9 3.7 50 51-101 14-64 (180)
470 KOG1371 UDP-glucose 4-epimeras 41.9 1.1E+02 0.0024 27.0 6.6 90 10-99 21-125 (343)
471 TIGR01425 SRP54_euk signal rec 41.8 2.6E+02 0.0056 25.9 9.4 89 12-102 125-224 (429)
472 PF13481 AAA_25: AAA domain; P 41.8 46 0.00099 26.4 4.3 47 52-98 129-184 (193)
473 PF04914 DltD_C: DltD C-termin 41.6 36 0.00078 25.5 3.3 50 51-101 37-96 (130)
474 PRK06512 thiamine-phosphate py 41.5 59 0.0013 26.8 4.9 49 52-101 29-79 (221)
475 PF00926 DHBP_synthase: 3,4-di 41.3 57 0.0012 26.3 4.6 35 63-98 152-186 (194)
476 PF04131 NanE: Putative N-acet 41.2 53 0.0012 26.3 4.3 135 51-195 53-191 (192)
477 PRK06683 hypothetical protein; 41.1 93 0.002 21.1 5.0 46 52-101 16-61 (82)
478 PLN02274 inosine-5'-monophosph 40.5 2.3E+02 0.0049 26.9 9.1 108 10-118 255-378 (505)
479 PF03796 DnaB_C: DnaB-like hel 40.4 2.2E+02 0.0048 23.9 9.1 25 4-28 37-61 (259)
480 TIGR02370 pyl_corrinoid methyl 40.3 2E+02 0.0043 23.2 8.1 101 16-121 85-194 (197)
481 PTZ00314 inosine-5'-monophosph 40.1 1.3E+02 0.0029 28.3 7.5 109 9-118 247-371 (495)
482 cd03313 enolase Enolase: Enola 39.7 1.2E+02 0.0026 27.8 7.0 85 11-98 273-361 (408)
483 COG1803 MgsA Methylglyoxal syn 39.7 92 0.002 23.2 4.9 49 53-101 65-114 (142)
484 PF01248 Ribosomal_L7Ae: Ribos 39.6 82 0.0018 21.7 4.8 46 51-100 19-65 (95)
485 PTZ00237 acetyl-CoA synthetase 39.6 2.3E+02 0.0049 27.7 9.4 73 7-81 108-182 (647)
486 PRK00014 ribB 3,4-dihydroxy-2- 39.4 69 0.0015 26.6 4.8 34 63-97 172-205 (230)
487 PRK01018 50S ribosomal protein 39.4 55 0.0012 23.1 3.8 44 52-99 21-64 (99)
488 PRK00077 eno enolase; Provisio 39.3 1.7E+02 0.0037 26.9 8.0 85 11-98 273-361 (425)
489 cd02071 MM_CoA_mut_B12_BD meth 39.0 1.5E+02 0.0033 21.6 6.7 64 34-100 21-88 (122)
490 cd01422 MGS Methylglyoxal synt 39.0 1.5E+02 0.0033 21.5 6.6 76 15-98 27-106 (115)
491 PF14258 DUF4350: Domain of un 38.8 1.1E+02 0.0023 19.7 5.3 54 40-99 17-70 (70)
492 COG0365 Acs Acyl-coenzyme A sy 38.7 2.1E+02 0.0045 27.3 8.5 82 14-99 64-146 (528)
493 TIGR02316 propion_prpE propion 38.6 2.6E+02 0.0056 27.1 9.6 79 6-86 98-178 (628)
494 TIGR00506 ribB 3,4-dihydroxy-2 38.6 74 0.0016 25.8 4.8 34 63-97 157-190 (199)
495 PF02142 MGS: MGS-like domain 38.5 34 0.00073 23.8 2.6 81 7-97 5-94 (95)
496 PRK11823 DNA repair protein Ra 38.3 2.9E+02 0.0062 25.7 9.3 51 48-98 141-203 (446)
497 COG1504 Uncharacterized conser 38.0 1.1E+02 0.0024 22.0 5.0 46 51-99 50-95 (121)
498 cd02065 B12-binding_like B12 b 38.0 1.5E+02 0.0033 21.3 6.6 61 40-102 26-89 (125)
499 PRK05096 guanosine 5'-monophos 37.8 2.1E+02 0.0045 25.5 7.7 76 42-118 152-240 (346)
500 TIGR01182 eda Entner-Doudoroff 37.8 2.2E+02 0.0049 23.2 7.9 41 49-99 67-107 (204)
No 1
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=350.31 Aligned_cols=304 Identities=39% Similarity=0.646 Sum_probs=279.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++..|++....+....++ +|+++.+++..+.+++++++..++|++|++++|+||+..+.
T Consensus 88 maAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~-~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~ 166 (396)
T COG0626 88 MAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQK-FGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVP 166 (396)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHh-cCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccc
Confidence 78999999999999999999999999999999998888 99999999988888888888336999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|++++||+++ +++.+.|+++|+|+++.|.+|+++|++..++|.++++.+ +.+.+..... ...|
T Consensus 167 DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~---~~~G 243 (396)
T COG0626 167 DIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQR---ANTG 243 (396)
T ss_pred cHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHH---hhcC
Confidence 9999999999999999999999 778999999999999999999999999999998876554 5555533333 1478
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++|+|.++.++++ |.|++++|++++.
T Consensus 244 ~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~---g~gg~~Sf~l~~~ 320 (396)
T COG0626 244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMT---GYGGLFSFELKNE 320 (396)
T ss_pred CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcC---CCceEEEEEeCCh
Confidence 99999999999999999999999999999999999999987 899999999999999999887 5899999999965
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.+. ++.|+|+.++++++|..+.|...+...+...|+.++.||+|+| .|+.++++++|+++|+++
T Consensus 321 ~~~~~f~~~L~l~~----~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG-lEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 321 EAAKKFLDSLKLFK----LAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-LEDVEDLIADLEQALAKA 395 (396)
T ss_pred HHHHHHHHhCCccE----EeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHhh
Confidence 77999999999744 6899999999999999999999999999999999999999999 999999999999999875
No 2
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=3.7e-49 Score=350.47 Aligned_cols=305 Identities=30% Similarity=0.479 Sum_probs=274.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 78 ~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~i-~~~tklV~lesP~NPtG~v~ 155 (388)
T PRK08861 78 TSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK-GDFKVQFVDQSDAAALDAAL-AKKPKLILLETPSNPLVRVV 155 (388)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCccc
Confidence 46889999999999999999999999877766544444 68999999888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .++...|.+.|+|++++|+||+++|++..++|+++. ++++.+.++.... ..|
T Consensus 156 dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~----~~G 231 (388)
T PRK08861 156 DIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN----CIG 231 (388)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh----ccC
Confidence 9999999999999999999999 556678888999999999999999987665799876 4567777776665 678
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.+++++++ |.|++++|+++ +
T Consensus 232 ~~~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~gg~~sf~~~~~ 308 (388)
T PRK08861 232 ATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQS---GFGSMLSFEFAGS 308 (388)
T ss_pred CCCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCC---CCCceEEEEeCCC
Confidence 88999999999999999999999999999999999999987 899999999999999999875 68999999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.+. +++|+|+.++++++|....|..+++..+...|+.++.||+|+| .|+.++++++|+++|++
T Consensus 309 ~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-lE~~~dli~Dl~~al~~ 383 (388)
T PRK08861 309 FEQLKVFVKALALFS----LAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG-LEDAQDLIADLDQAFAK 383 (388)
T ss_pred HHHHHHHHhcCCcce----EccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 677889999999744 5899999999999999999999999999999999999999999 99999999999999999
Q ss_pred hhhc
Q 020548 316 MQDS 319 (324)
Q Consensus 316 ~~~~ 319 (324)
+++.
T Consensus 384 ~~~~ 387 (388)
T PRK08861 384 AAEA 387 (388)
T ss_pred HHhc
Confidence 8764
No 3
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=100.00 E-value=3e-49 Score=348.83 Aligned_cols=300 Identities=41% Similarity=0.674 Sum_probs=262.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|.+....++...++ +|+++.+++..|++++++++ ++++++|++++|.||+..+.
T Consensus 80 maAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~-~gv~v~~~d~~d~~~l~~~l-~~~t~~v~~EspsNP~l~v~ 157 (386)
T PF01053_consen 80 MAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR-FGVEVTFVDPTDLEALEAAL-RPNTKLVFLESPSNPTLEVP 157 (386)
T ss_dssp HHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH-TTSEEEEESTTSHHHHHHHH-CTTEEEEEEESSBTTTTB--
T ss_pred HHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc-cCcEEEEeCchhHHHHHhhc-cccceEEEEEcCCCcccccc
Confidence 68899999999999999999999999999999888777 89999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcC-CEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC--hhHHHHHHHhhhhhhhc
Q 020548 81 NIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANLVNSMMDLHQGALML 156 (324)
Q Consensus 81 ~~~~i~~l~~~~~-~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~--~~~~~~l~~~~~~~~~~ 156 (324)
|+++|+++|+++| ++++||+++ .++.++|+++|+|+++.|++|+++|++..++|.++.+ +++.+.++.... .
T Consensus 158 Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~----~ 233 (386)
T PF01053_consen 158 DLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRR----L 233 (386)
T ss_dssp -HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHH----H
T ss_pred cHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhh----h
Confidence 9999999999998 999999999 6678899999999999999999999999999999865 478888877766 7
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|..+.+..+++++++++++..|++++.+++.++.++|++++. ++.+|+++++|+|.++.++.+ |.|++++|+++
T Consensus 234 ~G~~~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~ggl~sf~l~ 310 (386)
T PF01053_consen 234 LGATLSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMS---GGGGLLSFELK 310 (386)
T ss_dssp HT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCS---SCTSEEEEEES
T ss_pred cCccchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeeccc---ccCceeEEEec
Confidence 7899999999999999999999999999999999999999987 799999999999999999987 57779999999
Q ss_pred CHH-HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 235 TEE-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 235 ~~~-~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
+.. .+.+|++.++.+. .++|+|+.++++++|....|...+++.+...|++++.||+|+| .|+.++++++|++||
T Consensus 311 ~~~~~~~~f~~~l~l~~----~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG-lEd~~dLi~Dl~~AL 385 (386)
T PF01053_consen 311 GGEEAARRFLDALKLFS----IAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG-LEDPDDLIADLEQAL 385 (386)
T ss_dssp SHHHHHHHHHHH-SSSE----ESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE---SS-HHHHHHHHHHHH
T ss_pred cchhhhHhHHhhhhhHh----hhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec-cCCHHHHHHHHHHhc
Confidence 764 8999999999743 5899999999999999999999999999999999999999999 999999999999998
Q ss_pred H
Q 020548 314 S 314 (324)
Q Consensus 314 ~ 314 (324)
+
T Consensus 386 ~ 386 (386)
T PF01053_consen 386 E 386 (386)
T ss_dssp H
T ss_pred C
Confidence 6
No 4
>PLN02242 methionine gamma-lyase
Probab=100.00 E-value=3.8e-48 Score=347.92 Aligned_cols=314 Identities=84% Similarity=1.288 Sum_probs=278.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC-CceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~ 79 (324)
|+|+..++.+++++||+|+++.|.|+++...+.....+..|+++.+++..|++++++++ ++ ++++|++++|+||||.+
T Consensus 101 ~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i-~~~~tklV~lesp~NPtG~v 179 (418)
T PLN02242 101 MSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAV-VPGKTKVLYFESISNPTLTV 179 (418)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhc-CcCCCEEEEEecCCCCCCcc
Confidence 46888899999999999999999999998877555444479999999888999999999 66 59999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
.|+++|+++|+++|+++|+|++|..+.+++..+++|++++|+||+++++|++++||+++++++++.+.....+.....|.
T Consensus 180 ~dl~~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~ 259 (418)
T PLN02242 180 ADIPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGP 259 (418)
T ss_pred cCHHHHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCC
Confidence 99999999999999999999999777777777899999999999999999887799999999998888764421224567
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 239 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 239 (324)
.+.++.+++.+.++.++..+++++.++++++.++|++++.++.+|+++++|.|.+++++.++..|.|++++|++.+.+.+
T Consensus 260 ~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~ 339 (418)
T PLN02242 260 TMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERA 339 (418)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHH
Confidence 78888888888888899999999999999999999999889999999999999999999865557899999999877789
Q ss_pred HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC-HHHHHHHHHHHHHhh
Q 020548 240 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFEKALSRM 316 (324)
Q Consensus 240 ~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~-~~~~~~~l~~~l~~~ 316 (324)
.+|+++++.++.+..+++|+|++++++++|....|..+++..+...|++++.||+|+| .|+ .++++++|+++|++.
T Consensus 340 ~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~~dli~dl~~al~~~ 416 (418)
T PLN02242 340 NRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG-YTGTLEQRWSQFEKALSAM 416 (418)
T ss_pred HHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-CCCCHHHHHHHHHHHHHHh
Confidence 9999999965333336899999999999999999999999999899999999999999 995 999999999999875
No 5
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=4.2e-48 Score=346.22 Aligned_cols=304 Identities=36% Similarity=0.633 Sum_probs=274.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|+|+++...+....+. .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 89 ~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~d~e~l~~~i-~~~tklV~ie~p~NPtg~v~ 166 (398)
T PRK08249 89 MAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPR-MGVDVTLCETGDHEQIEAEI-AKGCDLLYLETPTNPTLKIV 166 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhh-CCeEEEEcCCCCHHHHHHhc-CCCCeEEEEECCCCCCCccC
Confidence 46888888888999999999999999988777665555 89999999988999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++|+ ++...+...++|++++|+||+++++|.+++|++++++++++.++.... ..+.
T Consensus 167 dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~----~~g~ 242 (398)
T PRK08249 167 DIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE----INGA 242 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH----hcCC
Confidence 99999999999999999999994 444556677899999999999999888878999999999998887766 6678
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..+++++++++.+..+++++.+++..+.++|++++. ++.+|+++++|.|.+++++.+ |.|++++|+++ +.
T Consensus 243 ~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~sf~~~~~~ 319 (398)
T PRK08249 243 TMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMR---GFGGILSFVLKGGM 319 (398)
T ss_pred CCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEEEcCCH
Confidence 8899999999999999999999999999999999999987 899999999999999999875 68999999997 55
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|...+++.+...|++++.||+|+| .|+.++++++|+++|+.+
T Consensus 320 ~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 394 (398)
T PRK08249 320 DTVKRLLPKLRYAH----RAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG-IEDTEDLIADLEQAFAHL 394 (398)
T ss_pred HHHHHHHHhCCcce----EccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHHh
Confidence 67889999999743 5899999999999999999999999999999999999999999 999999999999999987
Q ss_pred hh
Q 020548 317 QD 318 (324)
Q Consensus 317 ~~ 318 (324)
+.
T Consensus 395 ~~ 396 (398)
T PRK08249 395 ES 396 (398)
T ss_pred hh
Confidence 53
No 6
>PRK09028 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=3.6e-48 Score=343.68 Aligned_cols=299 Identities=26% Similarity=0.431 Sum_probs=266.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++|.|+++...+....++ +|+++.+++..+.+++++++ ++++|+|++++|+||+|.+.
T Consensus 86 ~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~-~Gi~v~~v~~~~~e~l~~~l-~~~TklV~lespsNPtg~v~ 163 (394)
T PRK09028 86 AAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG-FGIETTYYDPMIGEGIRELI-RPNTKVLFLESPGSITMEVQ 163 (394)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh-cceEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCCcHH
Confidence 57889999999999999999999999998877655555 89999998877888999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++||++|+++++|++| .++.+.|.++|+|+++.|++||++|++..++|+++.++++++.+..... ..|.
T Consensus 164 dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~----~~G~ 239 (394)
T PRK09028 164 DVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSY----LMGQ 239 (394)
T ss_pred HHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH----hcCC
Confidence 9999999999999999999999 6667889999999999999999999999999999888888777776555 6688
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--C
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--T 235 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~ 235 (324)
.+++..+++++++++++..|++++.+++..+.++|++++. ++.+|+++++|+|.++.++.+ |.|++++|+++ +
T Consensus 240 ~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf~l~~~~ 316 (394)
T PRK09028 240 CTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFS---GSNGLFSFVLKQGD 316 (394)
T ss_pred CCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhcc---CCCceEEEEECCCC
Confidence 9999999999999999999999999999999999999986 899999999999999999875 67899999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....+... ....++.++.||||+| .|+.++++++|+++|++
T Consensus 317 ~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svG-lEd~~dLi~Dl~~Al~~ 387 (394)
T PRK09028 317 PKAVTALVEGMQHFK----MGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIG-LEDVDDLIADLEAGFER 387 (394)
T ss_pred HHHHHHHHHhCCcce----EecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 567889999999744 68999999999999976554322 2235677789999999 99999999999999987
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+.
T Consensus 388 ~~ 389 (394)
T PRK09028 388 YN 389 (394)
T ss_pred HH
Confidence 75
No 7
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=325.04 Aligned_cols=307 Identities=34% Similarity=0.571 Sum_probs=277.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++..++++||+|+.++.-|++....+...+++ +|+++++++.+|++.+++++ +++||+|++++..||.+.+.
T Consensus 87 ~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~-~Gi~v~fvd~~d~~~~~~aI-~~nTkavf~EtigNP~~~v~ 164 (426)
T COG2873 87 QAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKR-LGIEVRFVDPDDPENFEAAI-DENTKAVFAETIGNPGLDVL 164 (426)
T ss_pred hHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHh-cCcEEEEeCCCCHHHHHHHh-CcccceEEEEeccCCCcccc
Confidence 78999999999999999999999999999999888787 99999999999999999999 99999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh--hHHH-------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA--NLVN------------- 144 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~--~~~~------------- 144 (324)
|++.|+++||++|+++|||+++ .++...|.++|+|+|+.|++|++||+|-.+||.++-.- +|..
T Consensus 165 Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~ 244 (426)
T COG2873 165 DIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPS 244 (426)
T ss_pred CHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCcc
Confidence 9999999999999999999999 66888999999999999999999999999988886332 2221
Q ss_pred --------------HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 145 --------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 145 --------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
.+.+.+....+..|..+++..+++++++++.+..|++|+.+|+.++.++|++++. ++.+|++++
T Consensus 245 YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~ 324 (426)
T COG2873 245 YHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLAS 324 (426)
T ss_pred ccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCC
Confidence 0001111145678899999999999999999999999999999999999999987 899999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+++|.+.++|..+ |.|++++|.+++ .+...+|++.++... .....|...++++||++..|.-++++++.+.|+
T Consensus 325 ~~~h~la~kyl~~--g~g~vltF~~kgg~ea~~~fi~~l~L~s----~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv 398 (426)
T COG2873 325 HPYHALAKKYLPK--GAGAVLTFGVKGGYEAGKKFIDALKLFS----HLANIGDARSLVIHPASTTHRQLSEEEQAAAGV 398 (426)
T ss_pred CcchhHHHhhccC--CCceEEEEEecChHHHHHHHHHHHHHHH----hhccccccceeEecCcccchhcCCHHHHHhcCC
Confidence 9999999999875 678899999994 488899999999633 466899999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++.||+|+| .|+.++++.+|+++|+++
T Consensus 399 ~~~~IRlSVG-IEd~~DiiaDl~qAl~~~ 426 (426)
T COG2873 399 TPDLIRLSVG-IEDIDDIIADLEQALEAA 426 (426)
T ss_pred CCCcEEEEec-cCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999763
No 8
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=2.6e-47 Score=339.84 Aligned_cols=304 Identities=30% Similarity=0.472 Sum_probs=269.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.++++|||+|++++|+|+++...+..+... .++++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 77 ~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~l-~~~tklV~l~sP~NPtG~v~ 154 (386)
T PRK08045 77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPLLRVV 154 (386)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-CCeEEEEeCCCCHHHHHHhc-ccCCeEEEEECCCCCCCEec
Confidence 46888889899999999999999999877777655544 56788888877999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....|...++|++++|++|+++|++..++|+++. ++++.+.+..... ..+
T Consensus 155 di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~----~~g 230 (386)
T PRK08045 155 DIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN----NIG 230 (386)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 444567788899999999999999877655688865 6778888876655 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.+++++.+ |.|++++|+++ +
T Consensus 231 ~~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~---g~g~~~s~~~~~~ 307 (386)
T PRK08045 231 VTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFELDGD 307 (386)
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCceEEEEecCc
Confidence 77889999999999999999999999999999999999987 899999999999999999874 68999999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.|+.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 308 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 308 EQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFRA 382 (386)
T ss_pred HHHHHHHHHhcccee----EeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 566789999999743 5899999999999999999999999988889999999999999 99999999999999998
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
+.+
T Consensus 383 ~~~ 385 (386)
T PRK08045 383 ANK 385 (386)
T ss_pred hhc
Confidence 753
No 9
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=100.00 E-value=2.6e-47 Score=341.71 Aligned_cols=303 Identities=31% Similarity=0.535 Sum_probs=269.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|+++...+....++ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 90 ~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~ai-~~~tklV~lesp~NptG~v~ 167 (398)
T PRK07504 90 MAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR-YGIESTLVDGLDLDNWEKAV-RPNTKVFFLESPTNPTLEVI 167 (398)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCcEec
Confidence 35676777778899999999999999988777655555 79999999888999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....+.+.++|+++.|+||+++++|+++||+++++++++. .++.... ..|
T Consensus 168 dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~----~~g 243 (398)
T PRK07504 168 DIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR----HTG 243 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHH----HhC
Confidence 9999999999999999999999 455567777899999999999999999998788888877664 3443333 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..++.++++++.+..+++++.+++..+.++|++++. ++.+|+++++|.|.+++++.+ |.|++++|+++ +
T Consensus 244 ~~~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 320 (398)
T PRK07504 244 PSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMT---GGSTLVAFELKGG 320 (398)
T ss_pred CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCC---CCccEEEEEeCCC
Confidence 78999999999999999999999999999999999999975 799999999999999999875 67999999996 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|..+.|..++++.+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 321 ~~~~~~~~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~ 395 (398)
T PRK07504 321 KEAAFRFLNALKIVR----ISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-LEDTDDLIEDLAAALKK 395 (398)
T ss_pred HHHHHHHHHhCCcce----ecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHh
Confidence 677889999999744 5899999999999999999999999999999999999999999 99999999999999987
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
++
T Consensus 396 ~~ 397 (398)
T PRK07504 396 VR 397 (398)
T ss_pred hh
Confidence 64
No 10
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=100.00 E-value=2.8e-47 Score=340.91 Aligned_cols=301 Identities=35% Similarity=0.621 Sum_probs=269.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++++.|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 86 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~ie~p~NptG~v~ 163 (390)
T PRK08133 86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFAR-FGIETTFVDLTDLDAWRAAV-RPNTKLFFLETPSNPLTELA 163 (390)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCCcC
Confidence 46888888888999999999999999888766555545 79999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++|+|++| .+....|...++|++++|+||+++++|.++||++++++++++.+..... ..+.
T Consensus 164 dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~----~~g~ 239 (390)
T PRK08133 164 DIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR----TAGP 239 (390)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHH----HhCC
Confidence 9999999999999999999998 4455667777999999999999999999988899999888877765554 5677
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..++.++++++.+..+++++.+++..+.++|++++. .+.+|.++++|+|.++.++.+ |.|++++|+++ +.
T Consensus 240 ~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~g~~~s~~l~~~~ 316 (390)
T PRK08133 240 TLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQK---GGGAIVSFEVKGGR 316 (390)
T ss_pred CCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCC---CCceEEEEEEcCCH
Confidence 8888888888889999999999999999999999999976 789999999999999999874 68999999997 56
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 317 ~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~ 390 (390)
T PRK08133 317 EAAWRVIDATRLIS----ITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVG-LEDVADIKADLARGLAA 390 (390)
T ss_pred HHHHHHHHhCCcce----EeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHhhC
Confidence 67889999999744 6899999999999999999999999999999999999999999 99999999999999863
No 11
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=8e-47 Score=338.40 Aligned_cols=303 Identities=32% Similarity=0.514 Sum_probs=268.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.++++|||+|+++.|.|++....+..+... .|+++..++..|++++++++ ++++++|++++|+||||.+.
T Consensus 85 ~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~l~~P~NPtG~v~ 162 (405)
T PRK08776 85 MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKK-GHFALITADLTDPRSLADAL-AQSPKLVLIETPSNPLLRIT 162 (405)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCccC
Confidence 46888999999999999999999999877666555444 78899999888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .+..+.|..+++|+++.|++|++++++..++|+++. ++++.+.+..... ..+
T Consensus 163 dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~----~~g 238 (405)
T PRK08776 163 DLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWAN----ALG 238 (405)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 445567778899999999999999887665688865 5677777766555 456
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++..+++++++.+++++.+|+..+.++|++++. ++.+|+++++++|.++.++.+ |.|++++|+++ +
T Consensus 239 ~~~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 315 (405)
T PRK08776 239 LTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQK---GFGAMLSFELEGG 315 (405)
T ss_pred CCCCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCC---CCceEEEEEEcCC
Confidence 56788888888889999999999999999999999999986 899999999999999999874 68999999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.+. +++|+|+.++++++|....|..++++.+...|++++.||||+| .|+.++++++|+++|++
T Consensus 316 ~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~al~~ 390 (405)
T PRK08776 316 EAAVRAFVDGLRYFT----LAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG-IESAEDLLIDLRAGLAR 390 (405)
T ss_pred HHHHHHHHHhCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 566789999999744 6899999999999999999999999988889999999999999 99999999999999998
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+.
T Consensus 391 ~~ 392 (405)
T PRK08776 391 AE 392 (405)
T ss_pred hH
Confidence 74
No 12
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=326.44 Aligned_cols=303 Identities=39% Similarity=0.588 Sum_probs=281.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..+++.++.+|++|+..+.+|.++...++.+.++ +|++..+++.++++++++++ ++++++|++++|.||+..+.
T Consensus 102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~-~gie~~~vd~~~~~~~~~~i-~~~t~~V~~ESPsNPll~v~ 179 (409)
T KOG0053|consen 102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPK-FGGEGDFVDVDDLKKILKAI-KENTKAVFLESPSNPLLKVP 179 (409)
T ss_pred HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHH-hCceeeeechhhHHHHHHhh-ccCceEEEEECCCCCccccc
Confidence 67899999999999999999999999999999999997 99999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++||++|++++||+++ +++.++|+.+|+|+|+.|.+|+++|++..++|.++.+ +++..+++..+. ..|
T Consensus 180 DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~----~lg 255 (409)
T KOG0053|consen 180 DIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE----DLG 255 (409)
T ss_pred cHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH----Hhc
Confidence 9999999999999999999999 5568899999999999999999999999999999886 889999988887 889
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
+.+.+..++...+++.++..|++++.+++..++++|++.+. ++.+|+++++|+|..+.++.++. +|+++++.+...
T Consensus 256 ~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~--~G~l~~~~~~~~ 333 (409)
T KOG0053|consen 256 WCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGG--YGGLSSVIFGNE 333 (409)
T ss_pred CCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCC--cceEEEEEcCCH
Confidence 99999999999999999999999999999999999999987 79999999999999999998753 444656666678
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++... .+.|+|++++++++|+.++|.. +.+++...|++++.||+|+| .|+.++++++|.+||+.+
T Consensus 334 ~~a~kf~~~LK~~~----~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVG-iEd~~dL~~d~~~Al~~~ 407 (409)
T KOG0053|consen 334 EHAKKFYDALKLFT----KAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVG-IEDIEDLIKDFQQALEKA 407 (409)
T ss_pred HHHHHHHHhhhhhh----cccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEec-cCCHHHHHHHHHHHHHhh
Confidence 88999999999632 5899999999999999999998 99999999999999999999 999999999999999876
Q ss_pred h
Q 020548 317 Q 317 (324)
Q Consensus 317 ~ 317 (324)
.
T Consensus 408 ~ 408 (409)
T KOG0053|consen 408 K 408 (409)
T ss_pred c
Confidence 3
No 13
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=7.5e-47 Score=340.50 Aligned_cols=308 Identities=34% Similarity=0.578 Sum_probs=267.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....+...+.+ .|+++++++..|++++++++ ++++++|++++|+||||.+.
T Consensus 89 ~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~-~Gv~v~~vd~~d~e~l~~ai-~~~tklV~l~sp~NPtG~v~ 166 (431)
T PRK08248 89 QAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK-LGITVKFVDPSDPENFEAAI-TDKTKALFAETIGNPKGDVL 166 (431)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh-CCEEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCCccc
Confidence 46788888888999999999999999887777655555 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH----------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------------- 143 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~---------------- 143 (324)
|+++|.++|+++|+++|+|++| .+....|.++++|+++.|++|+++++|.++||+++.+.+..
T Consensus 167 di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~ 246 (431)
T PRK08248 167 DIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPS 246 (431)
T ss_pred CHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccc
Confidence 9999999999999999999999 45566777889999999999999999999877776543210
Q ss_pred -------HHH------HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 144 -------NSM------MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 144 -------~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
+.+ ...........|..+++..+++++++++++..|++++.+++.++.++|++++. ++.+|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s 326 (431)
T PRK08248 247 YHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPS 326 (431)
T ss_pred cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCC
Confidence 100 00010112256788999999999999999999999999999999999999986 789999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+|+|.++.++.++ |.|++++|+++ +.+.+.+|+++++.++ +++|+|+.++++++|...+|..++++++...|+
T Consensus 327 ~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi 400 (431)
T PRK08248 327 HPSYELAKKYLPK--GQGAILTFGIKGGVEAGKKLIDSVKLFS----HLANVGDSKSLIIHPASTTHQQLSEEEQLAAGV 400 (431)
T ss_pred CccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCeeeeCCCcCccccCCHHHHHhcCC
Confidence 9999999998742 57899999997 5577889999999744 689999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+++.||||+| .|+.++++++|++||+.++
T Consensus 401 ~~~liRlsvG-lEd~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 401 TPGLVRLSVG-TEAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999998764
No 14
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=100.00 E-value=1.3e-46 Score=335.25 Aligned_cols=301 Identities=34% Similarity=0.518 Sum_probs=267.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++.|+|+++...+..+... .++++..++..|++++++++ ++++++|++++|+||||.+.
T Consensus 76 ~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~ai-~~~tklV~l~~p~NPtG~~~ 153 (382)
T TIGR02080 76 MSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK-GCFRVLFVDQGDEQALRAAL-AQKPKLVLIETPSNPLLRVV 153 (382)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCCEec
Confidence 57899999999999999999999999888777655444 67888888878999999999 78899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++++|++| .+....+...++|++++|+||++++++..++|+++. ++++.+.+..+.. ..|
T Consensus 154 dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~----~~g 229 (382)
T TIGR02080 154 DIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN----NLG 229 (382)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH----ccC
Confidence 9999999999999999999999 444566777789999999999998765533698855 6788888877766 668
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++++++.+..|++++.+++..+.++|++++. ++.+|.++++|.|.++.++.+ |.|++++|+++ +
T Consensus 230 ~~~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 306 (382)
T TIGR02080 230 VTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQK---GFGAMLSFELKGG 306 (382)
T ss_pred CCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEEecCc
Confidence 88999999999999999999999999999999999999987 799999999999999999864 68999999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....|..+++..+...|++++.||||+| .|+.++++++|+++|+.
T Consensus 307 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 307 EQTVRRFLGGLSLFT----LAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG-LEDADDLIADLEQGLRA 381 (382)
T ss_pred HHHHHHHHHcCCcce----EeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 566789999999744 5899999999999999999999999988899999999999999 99999999999999974
No 15
>PRK08114 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=8.5e-47 Score=333.79 Aligned_cols=298 Identities=21% Similarity=0.394 Sum_probs=263.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|.+....++..+++ +|+++.+++..|.+++++++ +++|++|++++|+||+|.+.
T Consensus 87 maAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~-~Gi~v~~vd~~d~~~l~~~l-~~~TrlV~~EtpsNp~~~v~ 164 (395)
T PRK08114 87 AAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK-LGVTTTWFDPLIGADIAKLI-QPNTKVVFLESPGSITMEVH 164 (395)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCEee
Confidence 67899999999999999999999999999888777777 89999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcC--CEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKG--VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~--~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++||++| ++++||+++ .++.++|.++|+|+++.|.+|+++|++..++|+++.++++++.++.... ..
T Consensus 165 DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~----~~ 240 (395)
T PRK08114 165 DVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSY----LM 240 (395)
T ss_pred cHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHH----hc
Confidence 9999999999984 999999999 6777999999999999999999999998888988888877777765555 67
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
|..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|+++.++.+ |.|++++|++++
T Consensus 241 G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~---g~gg~~sf~l~~ 317 (395)
T PRK08114 241 GQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFT---GSSGLFSFVLKK 317 (395)
T ss_pred cCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCC---CCceEEEEEecC
Confidence 889999999999999999999999999999999999999987 899999999999999999875 689999999974
Q ss_pred ---HHHHHHHHHHhhccccccccccccCCccceeccc--cccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 236 ---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS--GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
.+.+.+|++.++.++ +++|+|+.++++++| ....+.. .++ ..+..++.||+|+| .|+.++++++|+
T Consensus 318 ~~~~~~~~~f~~~l~l~~----~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvG-lEd~~DLi~Dl~ 388 (395)
T PRK08114 318 KLTDEQLANYLDNFSLFS----MAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIG-LEDVDDLIADLA 388 (395)
T ss_pred cccHHHHHHHHHhCCcce----eecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEec-cCCHHHHHHHHH
Confidence 577889999999744 699999999999854 3322222 221 23556799999999 999999999999
Q ss_pred HHHHhh
Q 020548 311 KALSRM 316 (324)
Q Consensus 311 ~~l~~~ 316 (324)
++|+++
T Consensus 389 ~Al~~~ 394 (395)
T PRK08114 389 AGFARI 394 (395)
T ss_pred HHHHhh
Confidence 999864
No 16
>PRK05967 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=1.3e-46 Score=333.01 Aligned_cols=297 Identities=24% Similarity=0.427 Sum_probs=263.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|++++|.|+++...+....++ +|+++.+++..+.+++++++ +++||+|++++|+||++.+.
T Consensus 89 ~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~-~Gi~v~~vd~~~~e~l~~al-~~~TklV~lesPsNP~l~v~ 166 (395)
T PRK05967 89 LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR-LGVEVEYYDPEIGAGIAKLM-RPNTKVVHTEAPGSNTFEMQ 166 (395)
T ss_pred HHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHhc-CcCceEEEEECCCCCCCcHH
Confidence 57899999999999999999999999998877666666 89999999887788899999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++++|++| .++.+.|.++|+|+++.|++|+++|++..++|+++.++++++.+..... ..|.
T Consensus 167 dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~----~~G~ 242 (395)
T PRK05967 167 DIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG----TLGL 242 (395)
T ss_pred HHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH----HcCC
Confidence 9999999999999999999999 6667899999999999999999999999988988888877777765554 5688
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C-
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T- 235 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~- 235 (324)
.+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.++.++.+ |.|++++|+++ +
T Consensus 243 ~~~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf~l~~~~ 319 (395)
T PRK05967 243 CAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFS---GASGIFSFVLAAGP 319 (395)
T ss_pred CCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCC---CCceEEEEEEcCCC
Confidence 8999999999999999999999999999999999999986 899999999999999999875 68999999997 3
Q ss_pred ---HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 236 ---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
.+.+.+|+++++.+. +++|+|+.+++++++.. +...+...+..++.||+|+| .|+.++++++|+++
T Consensus 320 ~~~~~~~~~f~~~l~l~~----~~~slG~~~sLi~~~~~------~~~~~~~~~~~~~liRlSvG-lEd~~dLi~Dl~~A 388 (395)
T PRK05967 320 EKGKAKAHAFLDALEIFG----LGYSWGGYESLALHVKL------GDRTVAKAPYAGPVIRLQIG-LEDVPDLKADLERG 388 (395)
T ss_pred cccHHHHHHHHHhCCcce----EccCCCCcceeeeeCCC------ChhHhhhccCCCCeEEEEec-cCCHHHHHHHHHHH
Confidence 577899999999743 68999999999987432 22333334677789999999 99999999999999
Q ss_pred HHhhh
Q 020548 313 LSRMQ 317 (324)
Q Consensus 313 l~~~~ 317 (324)
|+.+.
T Consensus 389 l~~~~ 393 (395)
T PRK05967 389 FAAAS 393 (395)
T ss_pred HHhhh
Confidence 98764
No 17
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=100.00 E-value=1.4e-46 Score=335.89 Aligned_cols=299 Identities=35% Similarity=0.594 Sum_probs=268.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....+.....+ +|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 79 ~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~le~p~np~g~~~ 156 (380)
T TIGR01325 79 MSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPR-FGIEVSFVDPTDLNAWEAAV-KPNTKLVFVETPSNPLGELV 156 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHH-hCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCeee
Confidence 46788888888999999999999998877666555555 79999999988999999999 78899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++|+ ++...+.+.++|+++.|++|+++++|.++||++++++++++.++.... ..|.
T Consensus 157 dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~----~~g~ 232 (380)
T TIGR01325 157 DIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR----HTGP 232 (380)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH----hhCC
Confidence 99999999999999999999994 455677788999999999999999998888999999988888877655 5677
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
.+.+..++.+++++..+..+++++.+++.++.++|++++. ++.+|.++++|.|.+++++.. |.|++++|++++.+
T Consensus 233 ~~~p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~---g~g~~~s~~l~~~~ 309 (380)
T TIGR01325 233 AMSPFNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQS---GGGTVIGFDVADRA 309 (380)
T ss_pred CCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEECCHH
Confidence 7888888888899999999999999999999999999976 789999999999999999874 68999999998777
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
.+.+|++.++.++ +++|+|+.++++.+|....|..++++.+...|++++.||+|+| .|+.++++++|+++|
T Consensus 310 ~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al 380 (380)
T TIGR01325 310 AAWKVLDAVELVS----ITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVG-LEDVDDLIADLKRAL 380 (380)
T ss_pred HHHHHHHcCCcce----EcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHhhC
Confidence 7899999999744 6899999999999999999999999999899999999999999 999999999999985
No 18
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=100.00 E-value=2.9e-46 Score=334.19 Aligned_cols=304 Identities=36% Similarity=0.622 Sum_probs=269.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|+.+...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 84 ~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~~~~vd~~d~e~l~~~i-~~~tklV~le~p~Np~G~v~ 161 (391)
T TIGR01328 84 MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK-FGIQVDFINMAIPEEVKAHI-KDNTKIVYFETPANPTMKLI 161 (391)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhh-ccCCeEEEEECCCCCCCccc
Confidence 46788888888999999999999998877777665555 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++| .+....+...++|++++|++|+++++|.+++|++++++++++.++..... ...|.
T Consensus 162 dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~--~~~g~ 239 (391)
T TIGR01328 162 DMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIK--DMTGS 239 (391)
T ss_pred CHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999999999999 44455677789999999999999999988779999999988888754321 13466
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..+++.+.+++.+..++++..+++..+.++|++++. .+.+|+++++|+|.+++++++ +.|++++|+++ +.
T Consensus 240 ~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---~~g~~~s~~~~~~~ 316 (391)
T TIGR01328 240 VISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMR---MGGGMITFELKGGF 316 (391)
T ss_pred CCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEEEEeCCCH
Confidence 7888888888888999999999999999999999999986 789999999999999999886 57999999997 56
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.+. ++.|+|+.++++++|....|...+++.+...|+.++.||||+| .|+.++++++|+++|+++
T Consensus 317 ~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 391 (391)
T TIGR01328 317 AGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-LEDADDLIADLKQALDAL 391 (391)
T ss_pred HHHHHHHHhCCcce----EecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHhhC
Confidence 77889999999744 5889999999999999999999988888889999999999999 999999999999999864
No 19
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=3.2e-46 Score=333.02 Aligned_cols=302 Identities=31% Similarity=0.543 Sum_probs=267.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC-CceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~ 79 (324)
|+|+..++.+++++||+|+++.+.|.++...++.+ .. .|+++.+++. |++++++++ ++ ++++|++++|+||||.+
T Consensus 78 ~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~-~g~~v~~~~~-d~~~l~~~i-~~~~tklV~ie~p~NPtG~v 153 (385)
T PRK08574 78 MAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EK-FGVKVVLAYP-STEDIIEAI-KEGRTKLVFIETMTNPTLKV 153 (385)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hc-cCcEEEEECC-CHHHHHHhc-CccCceEEEEECCCCCCCEe
Confidence 46888888888999999999999999998887654 34 7888888754 689999999 66 89999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEE-EEcChhHHHHHHHhhhhhhhcc
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~-i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
.|+++|+++|+++|+++|+|++| .++...+...|+|++++|++|++++++..+||+ ++.++++.+.++.... ..
T Consensus 154 ~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~----~~ 229 (385)
T PRK08574 154 IDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR----RL 229 (385)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH----hc
Confidence 99999999999999999999999 566667778899999999999999988877784 4567888888876665 46
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
|..+++..++.++.+++.+..+++++.+++.++.++|++++. ++.+|.++++|+|.++.+++++ .|.|++++|+++
T Consensus 230 g~~~~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~-~g~g~~~s~~l~~ 308 (385)
T PRK08574 230 GTIMQPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGK-DLYGGVVSFRVKG 308 (385)
T ss_pred CCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCC-CCcceEEEEEeCC
Confidence 777888888999999999999999999999999999999986 7999999999999999998742 257999999996
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+.+|+++++.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|+++|+
T Consensus 309 ~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~al~ 383 (385)
T PRK08574 309 GRDAVLKFLRSLKLIK----PSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG-LEDVEDLIEDLDQALG 383 (385)
T ss_pred CHHHHHHHHHcCCcce----EccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHh
Confidence 6678899999999744 6899999999999999999999999999999999999999999 9999999999999997
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
++
T Consensus 384 ~~ 385 (385)
T PRK08574 384 SI 385 (385)
T ss_pred cC
Confidence 64
No 20
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=4.2e-46 Score=333.01 Aligned_cols=307 Identities=29% Similarity=0.467 Sum_probs=268.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+||.+++.+++++||+||++.+.|.++...+.....+ +|+++.+++.. |++++++++ +++||+|++++|+||++.+
T Consensus 86 ~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~-~Gi~v~~vd~~~d~~~l~~~I-~~~Tk~I~~e~pgnP~~~v 163 (432)
T PRK06702 86 QAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRK-LGIDVTFFNPNLTADEIVALA-NDKTKLVYAESLGNPAMNV 163 (432)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHhC-CcCCeEEEEEcCCCccccc
Confidence 57899999999999999999999999988886555555 89999999984 899999999 8899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh----------HHH----
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------LVN---- 144 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~----------~~~---- 144 (324)
.|+++|+++|+++|+++|+|+++ .++...|.++|+|+++.|+||+++|++.-++|.++...+ +.+
T Consensus 164 ~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~ 243 (432)
T PRK06702 164 LNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPS 243 (432)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccc
Confidence 99999999999999999999999 667788999999999999999999999999888863221 110
Q ss_pred -------------H-HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 145 -------------S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 145 -------------~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
. +...........|..+++..++++++++++++.+++++.+|+..+.++|++++. ++.+|.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~ 323 (432)
T PRK06702 244 YHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDS 323 (432)
T ss_pred ccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCC
Confidence 0 100110012255778999999999999999999999999999999999999986 789999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+++|.+++++.+. |.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++.+|....|..++++.+...|+
T Consensus 324 ~p~~~l~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi 397 (432)
T PRK06702 324 NENYSLAQKYLKK--GASGVLTFGIKGGLEAAKEFIANVKLAT----LVTHVADARTCVIHPASTTHRQLSAEDQRLAGV 397 (432)
T ss_pred CccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCccce----eccccCCCCcceECCCCCCcccCCHHHHHhcCC
Confidence 9999999999742 57999999997 5677889999999744 699999999999999999999999999989999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+++.||||+| .|+.++++++|+++|+.=
T Consensus 398 ~~~liRlSvG-lEd~eDLi~Dl~~Al~~~ 425 (432)
T PRK06702 398 TSDLIRLSVG-IEDVSDIIADLEAALVGG 425 (432)
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999764
No 21
>PRK06234 methionine gamma-lyase; Provisional
Probab=100.00 E-value=7.5e-46 Score=332.78 Aligned_cols=304 Identities=40% Similarity=0.598 Sum_probs=269.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|+.+...+...+.. .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 89 ~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~~i-~~~tklI~iesP~NPtG~v~ 166 (400)
T PRK06234 89 MGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR-YGVEVTFVDTSNLEEVRNAL-KANTKVVYLETPANPTLKVT 166 (400)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh-CCeEEEEECCCCHHHHHHHh-ccCCeEEEEECCCCCCCCcC
Confidence 46788888888999999999999999888776555555 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhc--CCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDK--GVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~--~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|.++|+++ |+++|+|++|+ +....+...++|++++|++|+++++|++++||+++++++++.++.... ....
T Consensus 167 dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~--~~~~ 244 (400)
T PRK06234 167 DIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI--KDMT 244 (400)
T ss_pred CHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH--HHhc
Confidence 999999999997 99999999994 444566777899999999999999998877999999988888764321 1145
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
+..+++..++..+++++.++.+++++.+++.++.++|++++. ++.+|.++++|.|.++.++.+ +.|++++|+++
T Consensus 245 g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~---~~g~l~s~~l~~ 321 (400)
T PRK06234 245 GSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMS---LPGAMISFELKG 321 (400)
T ss_pred CCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCC---CCCceEEEEecC
Confidence 678888999999999999999999999999999999999986 899999999999999998875 67899999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+.+|+++|+.++ +++|+|+.++++++|....|...++..+...|++++.||+|+| .|+.++++++|++||+
T Consensus 322 ~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl~~dl~~al~ 396 (400)
T PRK06234 322 GVEEGKVVMNNVKLAT----LAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG-LEDVDDIIADLKQALD 396 (400)
T ss_pred cHHHHHHHHHhCCcce----EeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHHH
Confidence 5567889999999743 5899999999999999999999999999899999999999999 9999999999999998
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
++
T Consensus 397 ~~ 398 (400)
T PRK06234 397 LI 398 (400)
T ss_pred HH
Confidence 75
No 22
>PRK05939 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=331.82 Aligned_cols=304 Identities=30% Similarity=0.531 Sum_probs=263.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++++.|+++...+.. ..+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 72 ~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~-l~~-~G~~v~~v~~~d~e~l~~~l-~~~tklV~vesp~NptG~v~ 148 (397)
T PRK05939 72 MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRG-LGVEVTMVDATDVQNVAAAI-RPNTRMVFVETIANPGTQVA 148 (397)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHH-HHh-cCCEEEEECCCCHHHHHHhC-CCCCeEEEEECCCCCCCCHH
Confidence 5788999988999999999999999988776643 334 79999999998999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh--------HHHH------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--------LVNS------ 145 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~--------~~~~------ 145 (324)
|+++|+++|+++|+++|+|++| .+..+++...|+|+++.|+||+++++|.+++|+++.+.. +...
T Consensus 149 dl~~I~~la~~~gi~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~ 228 (397)
T PRK05939 149 DLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDP 228 (397)
T ss_pred hHHHHHHHHHHcCCEEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccch
Confidence 9999999999999999999999 566677888899999999999999999998565553321 1111
Q ss_pred ----HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHh
Q 020548 146 ----MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 146 ----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~ 219 (324)
+...........|..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.+++++.
T Consensus 229 ~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~ 308 (397)
T PRK05939 229 QQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELF 308 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhc
Confidence 111111111256888999999999999999999999999999999999999986 89999999999999999987
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
. |.|++++|++++.....+|++.++.+. .++|+|+.++++++|....|...+++.+...|++++.||+|+| .
T Consensus 309 ~---g~g~l~sf~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svG-l 380 (397)
T PRK05939 309 R---HYGGLLSFELADGIDCFDFLNRLKLVI----KATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVG-I 380 (397)
T ss_pred c---CCceEEEEEeCCHHHHHHHHHhCCcce----EccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeC-C
Confidence 4 689999999986667889999999633 5899999999999999999999888888889999999999999 9
Q ss_pred CCHHHHHHHHHHHHHh
Q 020548 300 GTLDQRWSQFEKALSR 315 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~ 315 (324)
||.++++++|+++|++
T Consensus 381 Ed~~dLi~dl~~Al~~ 396 (397)
T PRK05939 381 EDEADLIADFEQALDA 396 (397)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999964
No 23
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=100.00 E-value=1e-45 Score=329.20 Aligned_cols=301 Identities=34% Similarity=0.591 Sum_probs=267.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+.+++ ++++|||+|++++|.|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 75 ~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~-~gi~v~~vd~~d~e~l~~ai-~~~t~lV~lesP~Nptg~~~ 151 (380)
T PRK06176 75 LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVK-NGLSCTIIDTSDLSQIKKAI-KPNTKALYLETPSNPLLKIT 151 (380)
T ss_pred HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHh-cCeEEEEcCCCCHHHHHHhc-CcCceEEEEECCCCCCceec
Confidence 45777655 56899999999999999888777666655 89999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .++...|...++|++++|++|++++++..++|+++. ++++.+.++..+. ..|
T Consensus 152 di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~----~~G 227 (380)
T PRK06176 152 DLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN----AIG 227 (380)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH----Hhc
Confidence 9999999999999999999999 445556778899999999999999988777798876 4567777776665 556
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..++...+++..+..|++++.+++.++.++|++++. ++.+|.++++++|++++++.+ |.|++++|++++.
T Consensus 228 ~~~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 304 (380)
T PRK06176 228 GVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMR---GFSGMLSFTLKND 304 (380)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEECCH
Confidence 77778888888889999999999999999999999999986 789999999999999999874 6899999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|+++++.++ +++|+|+.++++++|....|...+++.+...|++++.||+|+| .|+.++++++|++||+++
T Consensus 305 ~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~Al~~~ 379 (380)
T PRK06176 305 SEAVAFVESLKLFI----LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG-IEHEQDLLEDLEQAFAKI 379 (380)
T ss_pred HHHHHHHHcCCcce----EccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHhhc
Confidence 88899999999744 6899999999999999999999999999999999999999999 999999999999999864
No 24
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=1.4e-45 Score=332.07 Aligned_cols=308 Identities=32% Similarity=0.520 Sum_probs=266.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++.+.|++....+....+. .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 83 ~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~-~gi~v~~~d~~d~e~le~ai-~~~tklV~lesp~NPtG~v~ 160 (425)
T PRK06084 83 MAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPR-IGIETRFAAHDDIAALEALI-DERTKAVFCESIGNPAGNII 160 (425)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccc-ceeEEEEECCCCHHHHHHHh-ccCCcEEEEeCCCCCCCeec
Confidence 46888999999999999999999999888777665555 78999999888999999999 77899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH--HH-------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VN------------- 144 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~--~~------------- 144 (324)
|+++|.++|+++|+++|+|++| .+....+.+.++|+++.|++|+++++|.++||+++.++.+ .+
T Consensus 161 dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~ 240 (425)
T PRK06084 161 DIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDP 240 (425)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCc
Confidence 9999999999999999999999 5556677888999999999999999999998877754321 10
Q ss_pred ---------------HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCC
Q 020548 145 ---------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLE 207 (324)
Q Consensus 145 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~ 207 (324)
.............|..+++..+++++++++.+..|++++.+++.++.++|++++. ++.+|.++
T Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~ 320 (425)
T PRK06084 241 SYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLP 320 (425)
T ss_pred ccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence 0000000011256788999999999999999999999999999999999999986 79999999
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
++|.|.++.++.+. +.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++++|....|...+++.+...|
T Consensus 321 ~~p~~~~~~~~~~g--~~gg~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~slv~~p~~~~h~~~~~~~~~~~g 394 (425)
T PRK06084 321 DHPEHELARRYMGG--KPASILSFGIKGGQAAGARFIDALKLVV----RLVNIGDAKSLACHPASTTHRQLNDEELEKAG 394 (425)
T ss_pred CcccHHHHHHhCCC--CcceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCceeeeCCCcCCcccCCHHHHHhcC
Confidence 99999999998751 26999999997 5566889999999744 58999999999999999999999999998999
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++++.||+|+| .||.++++++|+++|++..
T Consensus 395 i~~~liR~svG-lEd~~dLi~dl~~Al~~~~ 424 (425)
T PRK06084 395 VSRDMVRLSIG-IEHIDDIIADLAQALDASK 424 (425)
T ss_pred CCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 99999999999 9999999999999998653
No 25
>PRK06460 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=328.19 Aligned_cols=302 Identities=31% Similarity=0.540 Sum_probs=258.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.+.|++....+...... .|+++..++.++.+.+++.+ ++++++|++++|+||||.+.
T Consensus 70 ~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~-~G~~v~~~~~~~~~~l~~~~-~~~tklV~l~sp~NPtG~v~ 147 (376)
T PRK06460 70 MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKN-WGVNVDASNPGSDNIIEKAK-SKRYDVVFVENITNPLLRVV 147 (376)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHh-hCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCccc
Confidence 45788888889999999999998876555444444444 78999888877666666655 67899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++|+. +...+...++|+++.|+||++++++..++||+++++++++.++.... ..+.
T Consensus 148 d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~----~~g~ 223 (376)
T PRK06460 148 DITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRR----TLGT 223 (376)
T ss_pred CHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHH----hcCC
Confidence 999999999999999999999943 33445556899999999999987654335999999999999887665 4455
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+.+..++.++++.++++.+++++.++++++.++|++++. ++.+|.++++|.|.++.++.+ |.|++++|+++ +.
T Consensus 224 ~~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~s~~~~~~~ 300 (376)
T PRK06460 224 SLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLK---GFGGVLSFEVNGGQ 300 (376)
T ss_pred CCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEEcCcH
Confidence 5777777877888889999999999999999999999976 799999999999999999875 68999999997 55
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|++.++.+. +++|+|+.++++.+|....|...+++.+...|++++.||+|+| .|+.++++++|++||+.+
T Consensus 301 ~~~~~~~~~l~~~~----~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 301 ESALKVMKSLKLII----PAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG-IEDVNDLIEDLDRALSTL 375 (376)
T ss_pred HHHHHHHHhCCcce----eccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhh
Confidence 77889999998644 6889999999999999999999999999999999999999999 999999999999999864
No 26
>PRK07049 methionine gamma-lyase; Validated
Probab=100.00 E-value=1.8e-45 Score=331.81 Aligned_cols=301 Identities=28% Similarity=0.454 Sum_probs=263.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeE-EEecCCCHHHHHHhhh----cCCceEEEEecCCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT-TFVDISDHEMVNSAIV----QGRTKVLYFESISNP 75 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~l~~~l~----~~~~~~v~~~~~~np 75 (324)
|+||..++.+++++||+|+++.|.|+.+...+...+.. +|+++ .+.+..|++++++++. ++++++|++++|+||
T Consensus 108 ~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~-~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NP 186 (427)
T PRK07049 108 MSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN-FGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANP 186 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh-cCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCC
Confidence 46888899999999999999999999998876554444 78874 4444457888877663 257999999999999
Q ss_pred cccccChHHHHHHHHh------cCCEEEEcCCC-CcCCCCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVANIPELSRLAHD------KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~------~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~ 147 (324)
||.+.|++++.++++. +++++|+|++| ..+...|...++|+++.|+||++++ +|.|+ ||+++++++++.+.
T Consensus 187 tg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~-G~vv~~~~l~~~l~ 265 (427)
T PRK07049 187 TNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVA-GAVLGRKALIRQVR 265 (427)
T ss_pred CCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEE-EEEECCHHHHHHHH
Confidence 9999999999999987 79999999998 5555677778899999999999995 78885 99999999999998
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCC--CCCchhHHHHHHhccCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL--EDHPHHELLKSMANKEY 223 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~--~~~~~~~~~~~~~~~~~ 223 (324)
.... ..+..+++..++++++.++.+..+++++.++++.+.++|++++. ++.+|++ +++|+|.+++++.+
T Consensus 266 ~~~~----~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~--- 338 (427)
T PRK07049 266 ALRS----AIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCT--- 338 (427)
T ss_pred HHHH----hcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCC---
Confidence 7766 56788889999999999999999999999999999999999975 8899975 99999999999874
Q ss_pred CcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 224 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 224 ~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
|.|++++|+++ +.+.+.+|+++++.++ +++|+|+.++++++|....|...+++.+...|+.++.||||+| .|+.
T Consensus 339 g~g~~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~ 413 (427)
T PRK07049 339 GAGSTFSFDIKGGQAAAFRFLNALQIFK----LAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG-IEHP 413 (427)
T ss_pred CCccEEEEEEcCCHHHHHHHHHcCcccE----EcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeC-cCCH
Confidence 68999999997 5567889999999744 5899999999999999999999999999899999999999999 9999
Q ss_pred HHHHHHHHHHHHh
Q 020548 303 DQRWSQFEKALSR 315 (324)
Q Consensus 303 ~~~~~~l~~~l~~ 315 (324)
++++++|+++|++
T Consensus 414 ~dl~~dl~~al~~ 426 (427)
T PRK07049 414 DDLIADLAQALDA 426 (427)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 27
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=100.00 E-value=2.1e-45 Score=329.38 Aligned_cols=299 Identities=31% Similarity=0.505 Sum_probs=265.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++...|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 95 ~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~~esp~Nptg~v~ 172 (403)
T PRK07810 95 MSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEAL-SVPTQAVFFETPSNPMQSLV 172 (403)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCCeec
Confidence 46788888888999999999998887776666555555 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....+.+.|+|+++.|++|+++++|.++||+++++++.+. .++.... ..|
T Consensus 173 dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~----~~g 248 (403)
T PRK07810 173 DIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR----HTG 248 (403)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH----HhC
Confidence 9999999999999999999999 455667778899999999999999999998899998877554 4554444 556
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
..+++..+++++++++.+..+++++.+++.++.++|++++. ++.+|+++++|+|.+++++.+ |.|++++|++++
T Consensus 249 ~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~g~~~s~~l~~~ 325 (403)
T PRK07810 249 PALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMS---GGGTVVTFELDAP 325 (403)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEEcCC
Confidence 77899999999999999999999999999999999999986 799999999999999999875 689999999974
Q ss_pred ----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHH
Q 020548 236 ----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 311 (324)
Q Consensus 236 ----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~ 311 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....|...+.+.+...|+.++.+|||+| .|+.++++++|++
T Consensus 326 ~~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svG-lE~~~dli~dl~~ 400 (403)
T PRK07810 326 EDAAKKRAFEVLDKLRVID----ISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVG-LEDTDDLIADLDR 400 (403)
T ss_pred CCcCHHHHHHHHHhCCceE----EeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence 466789999999744 6889999999999999999999999888899999999999999 9999999999999
Q ss_pred HH
Q 020548 312 AL 313 (324)
Q Consensus 312 ~l 313 (324)
||
T Consensus 401 Al 402 (403)
T PRK07810 401 AL 402 (403)
T ss_pred hh
Confidence 87
No 28
>PRK07671 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=2.8e-45 Score=326.32 Aligned_cols=299 Identities=38% Similarity=0.643 Sum_probs=264.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++ .+++|||+|++++|.|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 75 ~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tklV~le~P~NPtg~~~ 151 (377)
T PRK07671 75 MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNR-FGIEHTFVDTSNLEEVEEAI-RPNTKAIYVETPTNPLLKIT 151 (377)
T ss_pred HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCCccc
Confidence 34565544 56899999999999999777666555555 79999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....+...++|++++|++|++++++..++|+++. ++++.+.+...+. ..|
T Consensus 152 dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~----~~g 227 (377)
T PRK07671 152 DIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN----STG 227 (377)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH----hhc
Confidence 9999999999999999999999 445566777899999999999999887655687755 6678888887776 568
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..++++++++..+..+++++.+++..+.++|++++. ++.+|.++++|.|.++.++.+ |.|++++|++.+.
T Consensus 228 ~~~~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 304 (377)
T PRK07671 228 GILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQAN---GFGGMISFDVGSE 304 (377)
T ss_pred CCCCHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEEeCCH
Confidence 88899999999999999999999999999999999999976 789999999999999999875 6789999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+|+++++.++ +++|+|+.++++++|....|...+++.+...|+.++.||+|+| .|+.++++++|+++|+
T Consensus 305 ~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~ 377 (377)
T PRK07671 305 ETANKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVG-IEDGEDLIEDLAQALA 377 (377)
T ss_pred HHHHHHHHhCCcce----EccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHhC
Confidence 78999999999744 6999999999999999999999999889899999999999999 9999999999999984
No 29
>PLN02509 cystathionine beta-lyase
Probab=100.00 E-value=1.5e-45 Score=332.31 Aligned_cols=300 Identities=30% Similarity=0.503 Sum_probs=264.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++ .++++||+|+++.+.|+++...+....++ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 158 ~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~-~G~~v~~vd~~d~e~l~~ai-~~~TklV~lesPsNPtG~i~ 234 (464)
T PLN02509 158 MAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTNLDEVAAAI-GPQTKLVWLESPTNPRQQIS 234 (464)
T ss_pred HHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHH-CCeEEEEeCCCCHHHHHHhC-CcCCeEEEEECCCCCCCCHH
Confidence 35665544 56899999999999999988777555555 79999999888999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .++...+...++|++++|++|++++++..++|+++. ++.+.+.++.... ..+
T Consensus 235 Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~----~~g 310 (464)
T PLN02509 235 DIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN----SEG 310 (464)
T ss_pred HHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 555567777899999999999999988766788875 4555666655544 446
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..+++.+.+++.+..+++++.++++++.++|++++. ++.+|+++++|+|.++.++.+ |.|++++|.+.+.
T Consensus 311 ~~l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~---g~gg~~sf~~~~~ 387 (464)
T PLN02509 311 SGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSV 387 (464)
T ss_pred CCcCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCC---CCceEEEEEeCCH
Confidence 66788899999999999999999999999999999999986 899999999999999999885 6899999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.+.+|++.++.+. +++|+|+.++++++|....|..++++++...|++++.||+|+| .|+.++++++|++||+.
T Consensus 388 ~~~~~f~~~l~l~~----~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvG-lE~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 388 ALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFRT 461 (464)
T ss_pred HHHHHHHHcCCcce----EcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHcc
Confidence 77889999999633 6999999999999999999999999999999999999999999 99999999999999964
No 30
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=100.00 E-value=3.6e-45 Score=326.01 Aligned_cols=301 Identities=32% Similarity=0.504 Sum_probs=265.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++. ++++||+|+++++.|+++...++....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 72 ~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~~~le~~i-~~~tklv~le~psnptg~v~ 148 (378)
T TIGR01329 72 MAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPR-SGVVVVHVDTTDLDKVKAAL-GPKTKLVLLESPTNPLQKIV 148 (378)
T ss_pred HHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CcCceEEEEECCCCCCCeee
Confidence 356776665 7899999999999999988877655555 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .+....+.+.++|++++|++|++++++..++|+++. ++.+.+.++.... ..|
T Consensus 149 dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~----~~G 224 (378)
T TIGR01329 149 DIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN----STG 224 (378)
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH----hcC
Confidence 9999999999999999999998 555667778899999999999998876544699876 5566677776655 457
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..++++..+++.+..++++..+++..+.++|++++. ++.+|.++++|.+.++.+..+ +.|++++|++.+.
T Consensus 225 ~~~~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~---g~~~~~sf~~~~~ 301 (378)
T TIGR01329 225 SGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAK---GAGSVLSFETGSV 301 (378)
T ss_pred CcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CcceEEEEEECCH
Confidence 77888888888889999999999999999999999999986 889999999999999998764 6899999999766
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
....+|++.|+. ++ +++++|+.++++++|....|..++++.+...|++++.||||+| .|+.++++++|+++|+++
T Consensus 302 ~~~~~~~~~L~~---~~-i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 302 ALSKRLVEATKL---FS-ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG-IEDVDDLISDLDIAFVTA 376 (378)
T ss_pred HHHHHHHHhCcC---cc-cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence 668899999986 43 5999999999999999999999999989899999999999999 999999999999999865
No 31
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=5.2e-45 Score=328.42 Aligned_cols=310 Identities=30% Similarity=0.517 Sum_probs=268.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||.+++.+++++||+|+++..+|+++...+...+++ .|+++.++|.+|++++++++ +++|++|++++++||+|.+.
T Consensus 89 t~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~d~~~l~~~i-~~~TklV~~e~~~np~g~v~ 166 (433)
T PRK08134 89 QAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRR-FGIETTFVKPGDIDGWRAAI-RPNTRLLFGETLGNPGLEVL 166 (433)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhh-CCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCcccCccc
Confidence 57899999888999999999999999887777555555 89999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH----------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------------- 143 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~---------------- 143 (324)
|+++|.++|+++|+++|+|++| .+....|.++|+|+++.|.||+++++|..+||+++....+.
T Consensus 167 Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~ 246 (433)
T PRK08134 167 DIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAG 246 (433)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCccc
Confidence 9999999999999999999999 56667788889999999999999999988877766321100
Q ss_pred -------------HHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 144 -------------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 144 -------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
..+...........|..+++..++++++++++++.|++++.+++.++.++|++++. ++.+|.+++
T Consensus 247 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~ 326 (433)
T PRK08134 247 FHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELES 326 (433)
T ss_pred ccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence 00000110011255778999999999999999999999999999999999999986 789999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+++|.++.++.+. |.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|+
T Consensus 327 ~p~~~~~~~~~~~--g~gg~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi 400 (433)
T PRK08134 327 HPDHALAKRLLPR--GAGSVFSFDLKGGRAAGRKFIESLKLFS----HLANVGDARSLVIHPASTTHFRMDAAALAAAGI 400 (433)
T ss_pred CccHHHHHHhCCC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCccCcccCCHHHHHhcCC
Confidence 9999999988742 57999999997 5677899999999744 588999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+++.||||+| .|+.++++++|+++|+++.+.
T Consensus 401 ~~~liRlsvG-lE~~~dli~dl~~Al~~~~~~ 431 (433)
T PRK08134 401 GEGTIRLSIG-LEDADDLIDDLKRALKAAEKA 431 (433)
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHHhhhhc
Confidence 9999999999 999999999999999987654
No 32
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=7.1e-45 Score=327.07 Aligned_cols=305 Identities=30% Similarity=0.517 Sum_probs=266.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec-CCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+|+..++.+++++||+|+++...|.++...+...+++ .|+++.+++ ..|++++++++ ++++++|++++|+||+|.+
T Consensus 94 ~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~-~Gi~v~~vdd~~d~e~l~~ai-~~~tklV~ie~~sNp~G~v 171 (436)
T PRK07812 94 QAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAV-RPNTKAFFAETISNPQIDV 171 (436)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhc-CeEEEEEECCCCCHHHHHHhC-CCCCeEEEEECCCCCCCee
Confidence 56888899999999999999999999988776655566 799999985 56899999999 7899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH----------------
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL---------------- 142 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~---------------- 142 (324)
.|+++|+++|+++|+++|+|+++ .+....+.++|+|+++.|+||+++++|..++|.++.+..+
T Consensus 172 ~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~ 251 (436)
T PRK07812 172 LDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPS 251 (436)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcc
Confidence 99999999999999999999998 5566788888999999999999999998887777753211
Q ss_pred --------------HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCC
Q 020548 143 --------------VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL 206 (324)
Q Consensus 143 --------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~ 206 (324)
+...+.. .....|..+++..+++++++++++..|++++.+++.++.++|++++. ++.+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl 328 (436)
T PRK07812 252 YHGVVFAELGPPAYALKARVQ---LLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGL 328 (436)
T ss_pred cccchhhhcchhHHHHHHHHH---HHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 1111111 12266889999999999999999999999999999999999999986 7899999
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 285 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (324)
+++|+|.++.++.+. |.|++++|+++ +.+.+.+|+++++.++ .++|+|+.++++++|....|..++++.+...
T Consensus 329 ~s~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~ 402 (436)
T PRK07812 329 PSSPWYERAKRLAPK--GTGAVLSFELAGGVEAGKAFVNALTLHS----HVANIGDVRSLVIHPASTTHSQLTPEEQLAT 402 (436)
T ss_pred CCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----EecccCCCcceeeCCCCCCcccCCHHHHHhc
Confidence 999999999998742 57999999997 5567899999999754 5889999999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|++++.||||+| .|+.++++++|+++|+++.
T Consensus 403 gi~~~liRlSvG-lEd~~dli~dl~~Al~~~~ 433 (436)
T PRK07812 403 GVTPGLVRLAVG-IEGIDDILADLEAGFAAAK 433 (436)
T ss_pred CCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 999999999999 9999999999999998775
No 33
>PRK07503 methionine gamma-lyase; Provisional
Probab=100.00 E-value=7.9e-45 Score=326.21 Aligned_cols=304 Identities=37% Similarity=0.568 Sum_probs=267.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.|.|......+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 90 ~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~le~p~NPtG~~~ 167 (403)
T PRK07503 90 MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGE-FGVTVRHVDLTDPAALKAAI-SDKTRMVYFETPANPNMRLV 167 (403)
T ss_pred HHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhh-CCEEEEEeCCCCHHHHHHhc-CccCcEEEEeCCCCCCCeee
Confidence 46788888888999999999999998776666544545 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh--hhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--HQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~--~~~~~~~~ 157 (324)
|+++|.++|+++|+++|+|++| .++...+...++|++++|++|+++++|..++|+++.++++++.++.. .. ..
T Consensus 168 di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~----~~ 243 (403)
T PRK07503 168 DIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKD----MT 243 (403)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHh----Cc
Confidence 9999999999999999999999 44455667779999999999999998765579999999888888643 22 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
+..+++..+++.+++++.+..+++++.+++..+.++|++++. ++.+|.+++++.|.++.++.+ +.|++++|.++
T Consensus 244 g~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~---~~g~~~s~~~~~ 320 (403)
T PRK07503 244 GAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMA---LPGGMIAFELKG 320 (403)
T ss_pred CCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEEEEECC
Confidence 677888999999999999999999999999999999999986 788999999999999998764 57999999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.....+|++.++.+. .++|+|+.++++++|....|..++++.+...|++++.||||+| .|+.++++++|+++|+
T Consensus 321 ~~~~~~~~~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~Al~ 395 (403)
T PRK07503 321 GIAAGRRFMNALQLFA----RAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVG-LEDVADILADLAQALD 395 (403)
T ss_pred CHHHHHHHHHhCCcce----eecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEe-cCCHHHHHHHHHHHHH
Confidence 5566789999998743 5889999999999999888999999999999999999999999 9999999999999999
Q ss_pred hhhh
Q 020548 315 RMQD 318 (324)
Q Consensus 315 ~~~~ 318 (324)
.+..
T Consensus 396 ~~~~ 399 (403)
T PRK07503 396 ACAV 399 (403)
T ss_pred HHHH
Confidence 8764
No 34
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=100.00 E-value=6.5e-45 Score=324.54 Aligned_cols=300 Identities=43% Similarity=0.699 Sum_probs=267.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....++..... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 65 ~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~np~g~~~ 142 (369)
T cd00614 65 MAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPK-LGIEVTFVDPDDPEALEAAI-KPETKLVYVESPTNPTLKVV 142 (369)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCeec
Confidence 46888999999999999999999999988777655555 79999999999999999999 77899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++++|++| .+....+.+.++|+++.|++|++++++..++|++++++ ++++.++.... ..|
T Consensus 143 dl~~i~~la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~----~~g 218 (369)
T cd00614 143 DIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL----ALG 218 (369)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH----hhC
Confidence 9999999999999999999999 44456777889999999999999988755469999877 88888887665 456
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++.+++.+..+++++.+++.++.++|++++. ++.+|.++++|.|.++.++.+ +.|++++|.++ +
T Consensus 219 ~~~~p~~a~~~l~~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~---g~g~i~s~~l~~~ 295 (369)
T cd00614 219 TILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYGGVFSFELKGG 295 (369)
T ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcC---CCceEEEEEeCCC
Confidence 77888888888889999999999999999999999999975 788999999999999999875 68999999997 6
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+.+.+|+++++.++ +++|+|+.++++++|....|...++..+...|++++.||+|+| .|+.++++++|+++|+
T Consensus 296 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG-lE~~~dl~~dl~~al~ 369 (369)
T cd00614 296 LEAAKKFLNALKLFS----LAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG-IEDVEDLIADLEQALK 369 (369)
T ss_pred HHHHHHHHHcCCcce----EcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHhhC
Confidence 788999999999743 5899999999999999999988888888888999999999999 9999999999999873
No 35
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=9.3e-45 Score=324.44 Aligned_cols=297 Identities=35% Similarity=0.553 Sum_probs=259.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++|+|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 86 ~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~gi~~~~~d~~d~e~l~~~i-~~~tklV~ie~p~NPtg~~~ 163 (388)
T PRK07811 86 MAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDLSDLDAVRAAI-TPRTKLIWVETPTNPLLSIT 163 (388)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcC-CCeEEEEeCCCCHHHHHHhc-CcCCeEEEEECCCCCcceec
Confidence 46889999999999999999999999887776655555 79999999988999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .+....+...++|++++|++|++++++..++|+++. ++++.+.+..... ..+
T Consensus 164 dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~----~~g 239 (388)
T PRK07811 164 DIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN----GAG 239 (388)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 444456777799999999999999987755698876 5667777765554 456
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++.+.+++.+..++++..+++..+.++|++++. ++.+|.++++|+|.++.++.+ |.|++++|+++ +
T Consensus 240 ~~~s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 316 (388)
T PRK07811 240 AVPGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR---GFGGMVSVRLAGG 316 (388)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcC---CCCceEEEEeCCC
Confidence 66777788888888999999999999999999999999986 789999999999999999874 68999999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+.+.+|+++++.++ +++|+|+.++++++|....|..++.. ..|+.++.||||+| .|+.++++++|++||+
T Consensus 317 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svG-lE~~~dl~~dl~~al~ 387 (388)
T PRK07811 317 EEAARDFCARTKVFT----LAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLADLEQALG 387 (388)
T ss_pred HHHHHHHHHhCCcce----eeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeC-CCCHHHHHHHHHHHhh
Confidence 677899999999744 68999999999999998888777644 35889999999999 9999999999999986
No 36
>PRK08064 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=2e-44 Score=322.53 Aligned_cols=303 Identities=33% Similarity=0.540 Sum_probs=266.0
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++. ++++||+|+++++.|+++...+.....+ .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 79 ~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~tklV~l~~p~NptG~~~ 155 (390)
T PRK08064 79 MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR-FGIEHTFVDMTNLEEVAQNI-KPNTKLFYVETPSNPLLKVT 155 (390)
T ss_pred HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCcEec
Confidence 456766665 6889999999999999877776655555 79999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++|.. ....+.+.++|+++.|+||++++++..++|+++. ++++.+.++.... .++
T Consensus 156 dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~----~~g 231 (390)
T PRK08064 156 DIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN----SFG 231 (390)
T ss_pred cHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHH----hcC
Confidence 999999999999999999999943 3456677899999999999999877655687765 5688888888776 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
....+..++..+.++..+..|+++..+++..+.++|++++. ++.+|.++++|.++++.++.+ +.|++++|++++.
T Consensus 232 ~~~~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~sf~~~~~ 308 (390)
T PRK08064 232 AVLGVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT---SAGAVLSFTLQSE 308 (390)
T ss_pred CCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCC---CcceEEEEEECCH
Confidence 77888888888889999999999999999999999999986 899999999999999998764 6899999999987
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++..+ +++|+|+.++++++|....|...+.+.+...|++++.||+|+| .||.++++++|+++|+++
T Consensus 309 ~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvG-le~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 309 EAVRQFVSHVKLPV----FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVG-LENVDDLIADFEQALSYV 383 (390)
T ss_pred HHHHHHHHhCCcce----EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence 78899999999633 5899999999999999888888888888888998999999999 999999999999999987
Q ss_pred hh
Q 020548 317 QD 318 (324)
Q Consensus 317 ~~ 318 (324)
.+
T Consensus 384 ~~ 385 (390)
T PRK08064 384 EE 385 (390)
T ss_pred cc
Confidence 54
No 37
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=2.6e-44 Score=324.66 Aligned_cols=305 Identities=32% Similarity=0.509 Sum_probs=264.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.+.|++....+...... .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 88 ~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~vesp~NptG~v~ 165 (427)
T PRK05994 88 HAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS-FGWQVRWADADDPASFERAI-TPRTKAIFIESIANPGGTVT 165 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCeec
Confidence 46888899999999999999999999887766544445 79999999998999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh------------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN------------------ 141 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~------------------ 141 (324)
|+++|.++|+++|+++|+|+++ .++...+.++++|+++.|++|+++++++.+||+++....
T Consensus 166 dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~ 245 (427)
T PRK05994 166 DIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245 (427)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcch
Confidence 9999999999999999999999 566677888899999999999999999888777763221
Q ss_pred -----HHHHHH-------HhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCC
Q 020548 142 -----LVNSMM-------DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLE 207 (324)
Q Consensus 142 -----~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~ 207 (324)
+.+.+. .... .....|..+++..+++.+++++.+..|++++.+++..+.++|++++. ++.+|.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~ 324 (427)
T PRK05994 246 YHGLVLHETFGNFAFAIAARVL-GLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLP 324 (427)
T ss_pred hhhhhHHHHhhhhhhHHHHHHH-HHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence 111111 0000 11256778999999999999999999999999999999999999986 78999999
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
++++|.++.++... |.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++++|....|...+++.+...|
T Consensus 325 ~~~~~~~~~~~~~~--g~g~~~sf~l~~~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g 398 (427)
T PRK05994 325 DDPYHALAQKYSPK--GAGAVFTFGLKGGYEAGVKLVSSLKLFS----HLANIGDTRSLVIHPASTTHRQLTDEQKVAAG 398 (427)
T ss_pred CCccHHHHHHhcCC--CceEEEEEEecCCHHHHHHHHHhCCcce----eccccCCCcceeeCCCCCCcccCCHHHHHhcC
Confidence 99999999998642 57999999997 5677889999999744 68899999999999999999999999898899
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
++++.||+|+| .|+.++++++|+++|++
T Consensus 399 i~~~liRlsvG-lE~~~dli~dl~~Al~~ 426 (427)
T PRK05994 399 AGPDVVRLSIG-IEDVDDIIADLEQALAK 426 (427)
T ss_pred CCCCcEEEEec-cCCHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999975
No 38
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=100.00 E-value=3.3e-44 Score=318.58 Aligned_cols=297 Identities=25% Similarity=0.467 Sum_probs=256.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++++.|++....+....+. +|+++.+++..+.+++++++ ++++|+|++++|+||+|...
T Consensus 75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~-~gi~v~~~d~~~~e~l~~~i-~~~tklV~lesp~Np~g~~~ 152 (377)
T TIGR01324 75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR-MGVDITYYDPLIGEDIATLI-QPNTKVLFLEAPSSITFEIQ 152 (377)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCcHH
Confidence 56889999999999999999999999887665444444 78999888776668899998 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++|+|++| .+..+.|.++|+|++++|++|++++++..++|+++.+++.++.+..... ..|.
T Consensus 153 dl~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~----~~G~ 228 (377)
T TIGR01324 153 DIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSY----LMGQ 228 (377)
T ss_pred HHHHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHH----HhCC
Confidence 9999999999999999999999 6666788899999999999999999887768999998888777765444 6688
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--C
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--T 235 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~ 235 (324)
.+.+..++..+++++.+..|++++.+++.++.++|++++. ++.+|.++++|.|.++.++.+ +.|++++|+++ +
T Consensus 229 ~l~p~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~g~~~s~~l~~~~ 305 (377)
T TIGR01324 229 MVDADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFS---GSSGLFSFVLQRLT 305 (377)
T ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhcc---CCCceEEEEECCCC
Confidence 8899999999999999999999999999999999999986 899999999999999999875 68999999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceecccc-ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG-SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+...+|++.++.+ + +++|+|+.++++++|. ...| ..+...++.++.||||+| .|+.++++++|+++|+
T Consensus 306 ~~~~~~~~~~l~~~---~-~~~slG~~~sl~~~~~~~~~~-----~~~~~~~~~~~liR~svG-lE~~~dl~~dl~~al~ 375 (377)
T TIGR01324 306 QKQVHAFLDHLQLF---G-LGYSWGGYESLALCNQPELGH-----RPNIKRNLEGPLIRVHIG-LENVDDLKADLKAGFE 375 (377)
T ss_pred HHHHHHHHHhCCcc---e-EeccCCCccceeecCCCCCCH-----HHHHhccCCCCEEEEEeC-CCCHHHHHHHHHHHHh
Confidence 56788999999973 3 5999999999987433 2222 223345677789999999 9999999999999998
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
.+
T Consensus 376 ~~ 377 (377)
T TIGR01324 376 AI 377 (377)
T ss_pred cC
Confidence 64
No 39
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=2.6e-44 Score=323.49 Aligned_cols=307 Identities=28% Similarity=0.450 Sum_probs=264.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec-CCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+|+.+++.+++++||+|++++..|+++...+...+.+ .|+++.+++ ..|++++++++ ++++++|+++++.||+|.+
T Consensus 94 ~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~~d~e~l~~~l-~~~tk~V~~e~~~Np~~~v 171 (437)
T PRK05613 94 QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR-LGIEVTFVENPDDPESWQAAV-QPNTKAFFGETFANPQADV 171 (437)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHh-cCeEEEEECCCCCHHHHHHhC-CccCeEEEEECCCCCCCcc
Confidence 46788888888999999999999999987666555555 899999997 45899999999 8889999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH---------------
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV--------------- 143 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~--------------- 143 (324)
.|+++|+++|+++|+++|+|+++ .+..+.+.+.|+|++++|+||+++++|..+||+++.+.++.
T Consensus 172 ~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~ 251 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFV 251 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCC
Confidence 99999999999999999999998 55567888889999999999999999887778887542210
Q ss_pred ---------------HH--HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCC
Q 020548 144 ---------------NS--MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYP 204 (324)
Q Consensus 144 ---------------~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p 204 (324)
+. +.+.........|..+++..+++++++++++..|++++.+++.++.++|++++. ++.+|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yP 331 (437)
T PRK05613 252 TPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFA 331 (437)
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECC
Confidence 00 000110122266899999999999999999999999999999999999999986 89999
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHH
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (324)
+++++|+|.++.++.. .+.|++++|+++ +.+.+.+|++.++.++ .++|+|+.++++++|....|...+++.+.
T Consensus 332 gl~~~p~~~~~~~~~~--~g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~h~~~~~~~~~ 405 (437)
T PRK05613 332 GLKDSPWYATKEKLGL--KYTGSVLSFDIKGGKDEAWAFIDALKLHS----NLANIGDVRSLVVHPATTTHSQSDEAGLA 405 (437)
T ss_pred CCCCCccHHHHHHhcC--CCCceEEEEEecCCHHHHHHHHHhCCcce----EccCCCCCchhhcCCCccCCccCCHHHHH
Confidence 9999999999998753 257899999997 5677899999999744 68899999999999999999999999999
Q ss_pred hcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 284 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 284 ~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..|++++.||||+| .|+.++++++|+++|+.+
T Consensus 406 ~~Gi~~~liRlsvG-lE~~~dLi~Dl~~Al~~~ 437 (437)
T PRK05613 406 RAGITQATVRLSVG-IEDIDDIIADLEGGFAAI 437 (437)
T ss_pred hcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhC
Confidence 99999999999999 999999999999999853
No 40
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=100.00 E-value=5.1e-44 Score=322.70 Aligned_cols=305 Identities=34% Similarity=0.576 Sum_probs=258.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 82 ~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~t~~V~le~p~NPtg~v~ 159 (418)
T TIGR01326 82 QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR-LGIEVRFVDPDDPEEFEKAI-DENTKAVFAETIGNPAINVP 159 (418)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCeec
Confidence 46788888888999999999999998877766555555 79999999988999999999 78899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH--------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-------------- 145 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~-------------- 145 (324)
|+++|+++|+++|+++|+|++| .++...+...++|+++.|+||+++++|+++||.++.++.+...
T Consensus 160 dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q 239 (418)
T TIGR01326 160 DIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSY 239 (418)
T ss_pred CHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCcc
Confidence 9999999999999999999999 4455667777899999999999999999984444433221100
Q ss_pred --------------HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCC
Q 020548 146 --------------MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 209 (324)
Q Consensus 146 --------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~ 209 (324)
+...........|..+.+..++.++.++.++..|++++.+++..+.++|.+++. .+.+|.++++
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~ 319 (418)
T TIGR01326 240 HGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASH 319 (418)
T ss_pred ccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence 000000011244677788999999999999999999999999999999999976 7899999999
Q ss_pred chhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
|.|.++.++.+. |.|++++|+++ +.+.+.+|+++++.++ .++|+|+.++++++|....|..+++..+...|++
T Consensus 320 ~~~~~~~~~~~~--g~g~~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~ 393 (418)
T TIGR01326 320 PHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLAS----HLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVT 393 (418)
T ss_pred ccHHHHHHhccC--CCcceEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCCCCcccCCHHHHHhcCCC
Confidence 999999998742 57999999996 5566889999999754 5889999999999999999999999999899999
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
++.||||+| .|+.++++++|++||+
T Consensus 394 ~~liR~svG-lE~~~dl~~dl~~Al~ 418 (418)
T TIGR01326 394 PGLIRLSVG-IENIDDIIADLEQALE 418 (418)
T ss_pred CCeEEEEec-CCCHHHHHHHHHHhhC
Confidence 999999999 9999999999999984
No 41
>PRK06767 methionine gamma-lyase; Provisional
Probab=100.00 E-value=8.2e-44 Score=318.64 Aligned_cols=296 Identities=31% Similarity=0.519 Sum_probs=257.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|+.+...+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 86 ~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~-~gi~~~~~~~~d~~~l~~~i-~~~tklV~lesp~NptG~v~ 163 (386)
T PRK06767 86 MAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK-FMITHSFCDMETEADIENKI-RPNTKLIFVETPINPTMKLI 163 (386)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhh-CcCceEEEEeCCCCCCceec
Confidence 45788888888999999999999999888877655555 78888888888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH-hhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~-~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++++|++| .+....+...++|+++.|++|+++++|.+++|++++++++++.+.. ... ..|
T Consensus 164 dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~----~~g 239 (386)
T PRK06767 164 DLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK----DIG 239 (386)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH----HhC
Confidence 9999999999999999999999 4445567777999999999999999999877999999887776543 333 446
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
+.+++..+++.+.++..+..+++++.+++.++.++|++++. .+.+| .|.+++++.+ +.|++++|+++ +
T Consensus 240 ~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~---~~gg~vsf~l~~~ 310 (386)
T PRK06767 240 GIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMK---RGGGVISFSIKGG 310 (386)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCC---CCCceEEEEEcCC
Confidence 66778888888889999999999999999999999999975 56666 5678887765 57899999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+...+|+++++. ++ +++|+|+.++++++|....|...+++.+...|++++.||||+| .|+.++++++|+++|+.
T Consensus 311 ~~~~~~f~~~l~~---~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 311 KEETQAFINDLHF---IT-IAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVG-LESWEDIVSDLEQALKK 385 (386)
T ss_pred HHHHHHHHHhCCc---cE-EecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 5678899999996 33 5899999999999999999999999999899999999999999 99999999999999975
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 386 ~ 386 (386)
T PRK06767 386 I 386 (386)
T ss_pred C
Confidence 4
No 42
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=100.00 E-value=8.4e-42 Score=302.13 Aligned_cols=281 Identities=31% Similarity=0.514 Sum_probs=245.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||.+++ .++++||+|+++.+.|+.....+....+. .++++.+. .|++++++++ +++|++|++++|+||+|.+.
T Consensus 79 ~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~-~~~~~~~~--~d~~~l~~~i-~~~TklV~lesP~NPtg~~~ 153 (364)
T PRK07269 79 MSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKE-GRFHFTYA--NTEEELIAAI-EEDTDIVYIETPTNPLMVEF 153 (364)
T ss_pred HHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhc-CcEEEEec--CCHHHHHHhc-CcCceEEEEECCCCCCCeee
Confidence 46778777 46799999999999999887766544333 35555553 4899999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .++...|...++|++++|++|+++++|..++|+++. ++++.+.++.... ..|
T Consensus 154 di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~----~~G 229 (364)
T PRK07269 154 DIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLN----TTG 229 (364)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHH----HhC
Confidence 9999999999999999999998 666678888899999999999999988876799876 5678888876554 557
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++.+.+++.+..+++++.+++.++.++|++++. ++.+|. .|++++|.+.+.
T Consensus 230 ~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg-------------------~gg~~sf~~~~~ 290 (364)
T PRK07269 230 AVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG-------------------KGGMISFKVADE 290 (364)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC-------------------cCcEEEEEECCH
Confidence 78899999999999999999999999999999999999975 777786 588999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+|++.++... +++|+|+.++++++|+..+|...+++.+...|+.++.||+|+| .|+.++++++|+++|+
T Consensus 291 ~~~~~f~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvG-lE~~~dli~dl~~al~ 363 (364)
T PRK07269 291 TRIPHILNSLKVFT----FAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG-IEDARDLIADLKQALE 363 (364)
T ss_pred HHHHHHHHhCCcce----EccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHhc
Confidence 77889999999643 6899999999999999999999999999999999999999999 9999999999999985
No 43
>PRK06434 cystathionine gamma-lyase; Validated
Probab=100.00 E-value=1.2e-41 Score=301.43 Aligned_cols=292 Identities=32% Similarity=0.561 Sum_probs=254.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||.+++.+++++||+|+++.+.|......+.....+ +|+++.++|.++.+.+. +..+++++|++++|+||++.+.
T Consensus 89 ~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~-~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~ 165 (384)
T PRK06434 89 MGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT-LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVP 165 (384)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHh-cCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceee
Confidence 57899999999999999999999998888777666666 89999999987655554 4234799999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|++++ +++|+++ +++...|...++|++++|.+|++++++.-+||.++. ++++.+.++.... ..|
T Consensus 166 Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~----~~G 239 (384)
T PRK06434 166 DIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK----TLG 239 (384)
T ss_pred cHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH----hcC
Confidence 9999999999998 5679998 566678888999999999999999988766788866 5667777765544 457
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++.+++++.++.+++++.+++..+.++|++++. ++.+|+++ +++++.+ |.|++++|++++.
T Consensus 240 ~~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~---g~g~~~sf~l~~~ 310 (384)
T PRK06434 240 SNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLR---GFGGMLSFELRSM 310 (384)
T ss_pred CCCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcC---CCCceEEEEECCH
Confidence 77889999999999999999999999999999999999986 89999974 6777664 6899999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|++||++
T Consensus 311 ~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvG-lEd~~dLi~dl~~Al~~ 384 (384)
T PRK06434 311 EDVHKFIRNLEIPM----VAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIG-IEDIDDLIKDIENALSK 384 (384)
T ss_pred HHHHHHHHhCCcce----EccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHHHHHHHhcC
Confidence 78899999999744 5899999999999999999999999999999999999999999 99999999999999963
No 44
>PRK07582 cystathionine gamma-lyase; Validated
Probab=100.00 E-value=2.1e-41 Score=300.78 Aligned_cols=287 Identities=29% Similarity=0.411 Sum_probs=244.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|++++|.|+++...+...+.+ .|+++.+++..+... .+ .+++++|++++|+||+|.+.
T Consensus 75 ~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~~~~~---~~-~~~t~lV~le~p~NPtg~v~ 149 (366)
T PRK07582 75 MAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP-LGVTVREAPTAGMAE---AA-LAGADLVLAETPSNPGLDVC 149 (366)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc-CeEEEEEECCCChHH---Hh-ccCceEEEEECCCCCCCCcc
Confidence 45788888888999999999999999988776544455 799999998765332 33 46899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCC-CeeEEEEEc-ChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGA-DIIAGAVCG-PANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~-~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++|+++|+++++|++| ......|.++++|++++|+||++++++ .+ +||++. ++++.+.+..+.. ..
T Consensus 150 di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~-~G~v~~~~~~l~~~l~~~~~----~~ 224 (366)
T PRK07582 150 DLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLL-LGYVAGRDPELMAAVERWRL----LA 224 (366)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCee-EEEEEcCcHHHHHHHHHHHH----Hh
Confidence 9999999999999999999998 455567777899999999999998755 55 599986 5788888887766 56
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+..+++..++++++++..++.+++++.+++..+.++|++++. ++.+|+++++|.|.++.++.+ |.|++++|++++
T Consensus 225 g~~~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~gg~~s~~~~~ 301 (366)
T PRK07582 225 GAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMR---RFGGLVSFELAD 301 (366)
T ss_pred CCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCC---CCcceEEEEeCC
Confidence 777888999999999999999999999999999999999986 799999999999999999875 689999999998
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|+++++.+. .++|+|+.++++..+... ..+++++.||+|+| .|+.++++++|+++|++
T Consensus 302 ~~~~~~~~~~l~~~~----~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svG-lE~~~dli~dl~~al~~ 365 (366)
T PRK07582 302 AAAAERFVAASRLVV----AATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCG-IEDTDDLVADLERALDA 365 (366)
T ss_pred HHHHHHHHHhCCcce----ecccCCCccchhhhHHHc-----------CCCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 888999999998644 588999999987543221 12366799999999 99999999999999976
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 366 ~ 366 (366)
T PRK07582 366 L 366 (366)
T ss_pred C
Confidence 4
No 45
>PRK07050 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=3.9e-41 Score=301.23 Aligned_cols=296 Identities=25% Similarity=0.359 Sum_probs=252.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|++++|+|..+...+...... .|+++.+++..+.+++++++ ++++++|++++|+||+|...
T Consensus 90 t~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~~~~~l~~~i-~~~tklV~le~p~Np~~~~~ 167 (394)
T PRK07050 90 LAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD-FGITVRFYDPLIGAGIADLI-QPNTRLIWLEAPGSVTMEVP 167 (394)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh-cCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCccHh
Confidence 46888999999999999999999999988766544444 79999999877788899998 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~~~~~~ 158 (324)
++++|+++|+++|+++++|++| .+..+.+.+.|+|+++.|++|++++++..++|+++ .++++.+.++.... ..|
T Consensus 168 di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~----~~G 243 (394)
T PRK07050 168 DVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARM----RLG 243 (394)
T ss_pred hHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 66667888889999999999999886665468665 57788888877766 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
....+..++.+++++.++..|++++.+++.++.++|++++. ++.+|.+++++.+.++.++.. +.|++++|++++
T Consensus 244 ~~~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---~~g~~~s~~l~~~ 320 (394)
T PRK07050 244 IGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFT---GAGGLFSVVFDER 320 (394)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCceEEEEEECCC
Confidence 78888888888899999999999999999999999999976 788999999999998888764 578999999973
Q ss_pred --HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 236 --EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 236 --~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
.+...+|++.++. ++ +++|+|+.+++++ |....|.... .....++.||||+| .|+.++++++|+++|
T Consensus 321 ~~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svG-lE~~~dl~~dl~~al 389 (394)
T PRK07050 321 YSPAQVDAFVEALEL---FA-IGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIG-LEDEADLIADLEQAL 389 (394)
T ss_pred CCHHHHHHHHHcCCC---Ce-eccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeC-cCCHHHHHHHHHHHH
Confidence 5778999999997 33 5899999999997 6544433221 23356699999999 999999999999999
Q ss_pred Hhh
Q 020548 314 SRM 316 (324)
Q Consensus 314 ~~~ 316 (324)
+..
T Consensus 390 ~~~ 392 (394)
T PRK07050 390 EAA 392 (394)
T ss_pred HHh
Confidence 864
No 46
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=100.00 E-value=1.1e-40 Score=296.54 Aligned_cols=285 Identities=28% Similarity=0.533 Sum_probs=245.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++ +++++||+|++++|.|++....+...... +|+++.+++..|++++++++ ++++++|++++|+||+|...
T Consensus 77 ~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklv~le~P~NP~~~~~ 153 (366)
T PRK08247 77 MAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK-WNVRFVYVNTASLKAIEQAI-TPNTKAIFIETPTNPLMQET 153 (366)
T ss_pred HHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc-cCceEEEECCCCHHHHHHhc-ccCceEEEEECCCCCCCcHH
Confidence 45777655 57889999999999999987777665555 89999999999999999999 77999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
++++|+++|+++|+++|+|++| .++...|...++|++++|+||++++++..++|+++.+ +++.+.+...+. ..+
T Consensus 154 dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~----~~g 229 (366)
T PRK08247 154 DIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN----AAG 229 (366)
T ss_pred HHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 5666677777899999999999998766446999886 678888876665 445
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++++++++.+..+++++.++++.+.++|++++. .+.+|. .|++++|++++.
T Consensus 230 ~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~-------------------~gg~~sf~~~~~ 290 (366)
T PRK08247 230 AVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG-------------------RGGMLSFRLQDE 290 (366)
T ss_pred CCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC-------------------cCcEEEEEECCH
Confidence 55677777888888899999999999999999999999864 455664 577999999876
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+...+|++.++.+. ++.|+|+.++++++|+..+|...+++.+...|+.++.+|||+| .|+.++++++|++||+++
T Consensus 291 ~~~~~~~~~l~~~~----~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svG-lE~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 291 EWVNPFLKSLKLIT----FAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVG-IENVEDLIADLKQAFKQV 365 (366)
T ss_pred HHHHHHHHcCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhc
Confidence 66778999888633 6889999999999999999888888888889999999999999 999999999999999863
No 47
>PRK05968 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=295.86 Aligned_cols=297 Identities=31% Similarity=0.489 Sum_probs=251.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.+.|++....+...... .|+++.+++..|++++++++ +++++|++++|+|+++...
T Consensus 88 ~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i--~~tklV~ie~pt~~~~~~~ 164 (389)
T PRK05968 88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKR-MGVEVDYVDGRDEEAVAKAL--PGAKLLYLESPTSWVFELQ 164 (389)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCceEEEeCCCCHHHHHHhc--ccCCEEEEECCCCCCCcHH
Confidence 45788888888999999999999999887666555545 79999999998999999987 4689999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++| .+....+...++|+++.|++|++++++..++|++++++++++.++..... ..+.
T Consensus 165 dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~---~~g~ 241 (389)
T PRK05968 165 DVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYP---YLGA 241 (389)
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHH---hCCC
Confidence 9999999999999999999999 44446677789999999999999998775469999999988888765431 3456
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
.+++..++.++.+++.+..+++++.++++++.++|++++. .+.+|.++++|.. .. .+.|++++|++++..
T Consensus 242 ~~~~~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~-----~~---~g~g~~~sf~~~~~~ 313 (389)
T PRK05968 242 KLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPA-----GL---SGTSGLFSFIFREGI 313 (389)
T ss_pred CCChHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHH-----hC---CCCceEEEEEECCHH
Confidence 6788888889999999999999999999999999999975 6778988877632 22 257889999998666
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCC-CHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL-NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...+|+++|+. ++ +++|+|+.+++++ |..+.|... ++..+...|++++.||+|+| .|+.++++++|+++|++.
T Consensus 314 ~~~~f~~~L~~---~~-~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvG-lE~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 314 DVRAFADALKL---FR-LGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVG-LEGTEALWADLEQALAAA 387 (389)
T ss_pred HHHHHHHhCCc---cE-EecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHHh
Confidence 78999999986 33 5889999999998 877776664 36667788999999999999 999999999999999876
Q ss_pred h
Q 020548 317 Q 317 (324)
Q Consensus 317 ~ 317 (324)
.
T Consensus 388 ~ 388 (389)
T PRK05968 388 S 388 (389)
T ss_pred h
Confidence 4
No 48
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-33 Score=246.51 Aligned_cols=249 Identities=22% Similarity=0.274 Sum_probs=193.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----C---CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----S---DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~---d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..+++++++|||+|++++|.|+.|.... +..|.++..++. . |++++++++ +++||+|++++||
T Consensus 100 ~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~-----~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i-~~ktk~i~ln~P~ 173 (393)
T COG0436 100 EALFLAFLALLNPGDEVLIPDPGYPSYEAAV-----KLAGGKPVPVPLDEEENGFKPDLEDLEAAI-TPKTKAIILNSPN 173 (393)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHH-----HhcCCEEEEEeCCcCccCCcCCHHHHHhhc-CccceEEEEeCCC
Confidence 6899999999999999999999999999988 447888777763 1 799999999 7799999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------CC----CCcEEEeCCccccccCCCeeEEEEEcC-
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------RL----GADVVVHSISKFISGGADIIAGAVCGP- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~- 139 (324)
||||.+.+ +++|+++|++||+++|.||+|.++.++.. +. ...+++.|+||.|+++|+|+ ||++++
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv-G~~v~~~ 252 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI-GWVVGPP 252 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce-eEeecCh
Confidence 99999975 77999999999999999999977765421 11 35799999999999999997 999998
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCC-CceeC-CCCCCCchhHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLG-LKVLY-PGLEDHPHHEL 214 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-p~~~~~~~~~~ 214 (324)
+++.+.+.+... ....+.+.+.|.++..++...+ .++...+.+.++++.+.+.|.+.+ ..+.. |.
T Consensus 253 ~~l~~~~~~~~~-~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~--------- 322 (393)
T COG0436 253 EELIAALRKLKS-YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPE--------- 322 (393)
T ss_pred HHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCC---------
Confidence 888888886665 4446677788888777777653 344455678999999999999886 56555 44
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
++++++..++...+...|+..|-. ..| +.+.|+..++. ....+++|+
T Consensus 323 ----------Ga~Y~~~~i~~~~d~~~f~~~Ll~--~~g-----------V~v~PG~~Fg~----------~~g~~~vRi 369 (393)
T COG0436 323 ----------GAFYLFPKIPELLDSEEFAKKLLE--EAG-----------VAVVPGSGFGE----------PPGEGYVRL 369 (393)
T ss_pred ----------eeEEEEeecCCCCCHHHHHHHHHH--hCC-----------EEEecccccCC----------CCCCCeEEE
Confidence 677788888744556677777664 122 33455554421 123589999
Q ss_pred EeccCCC
Q 020548 295 SVGYLGT 301 (324)
Q Consensus 295 s~g~~~~ 301 (324)
|++ ...
T Consensus 370 s~~-~~~ 375 (393)
T COG0436 370 SLA-TSE 375 (393)
T ss_pred EEe-cCH
Confidence 999 443
No 49
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.98 E-value=1.2e-30 Score=235.63 Aligned_cols=260 Identities=18% Similarity=0.183 Sum_probs=189.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++ .+++++|++++|||
T Consensus 117 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~nP~N 190 (410)
T PRK06290 117 PALAMLPSCFINPGDVTLMTVPGYPVTGTHTK-----YYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAKLLYLNYPNN 190 (410)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEecCCCcCCcCCHHHHHHhh-cccceEEEEECCCC
Confidence 57888999999999999999999999988774 367777776653 788888888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c-cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++ + .. .+.+++++|+||.+|++|+|+ ||+++++++
T Consensus 191 PTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRi-G~ii~~~~l 269 (410)
T PRK06290 191 PTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRL-AFVVGNELI 269 (410)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhhe-EeEEeCHHH
Confidence 9999987 578888899999999999999665321 1 11 146799999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
++.+...... ...+.+.+.+.++..++....++....+++.++++.+.+.|++.+..+..|.
T Consensus 270 ~~~l~~~~~~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~----------------- 331 (410)
T PRK06290 270 VKAFATVKDN-NDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVGFKAEMPG----------------- 331 (410)
T ss_pred HHHHHHHHhc-cccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCC-----------------
Confidence 9988876551 1112223444454445544444556667778999999999999876654443
Q ss_pred CCcceEEEEEeCCH-------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 223 YGFGGLLCLDMETE-------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 223 ~~~g~~~~~~l~~~-------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
+|.++|+.+++. .+..+|.+.|.. .|. ++..|+.. .++++|++
T Consensus 332 --g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~---~~~----------v~~~p~~~---------------~~~~lRi~ 381 (410)
T PRK06290 332 --GTFYLYVKAPKGTKSGIKFENAEEFSQYLIK---EKL----------ISTVPWDD---------------AGHFLRFS 381 (410)
T ss_pred --eeeEEEEECCCccccCCCCCCHHHHHHHHHH---hCC----------EEEECCcc---------------ccCeEEEE
Confidence 566778888732 245667777663 111 11122211 13689999
Q ss_pred ecc----CCCHHHHHHHHHHHHHhh
Q 020548 296 VGY----LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~----~~~~~~~~~~l~~~l~~~ 316 (324)
+++ .++.+..++.|++.|..+
T Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 382 VTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred EEcccccccchhHHHHHHHHHHhhc
Confidence 972 355666677777777655
No 50
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.98 E-value=1.8e-30 Score=234.61 Aligned_cols=219 Identities=15% Similarity=0.155 Sum_probs=168.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++ .+++++|++++|||
T Consensus 104 ~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~P~N 177 (399)
T PRK07681 104 DGLVHLPMVYANPGDIILVPDPGYTAYETGIQ-----MAGATSYYMPLKKENDFLPDLELIPEEI-ADKAKMMILNFPGN 177 (399)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCccchHHHHH-----hcCCEEEEEecCCCCCCcCCHHHHHHhc-cccceEEEEeCCCC
Confidence 57888888999999999999999999998874 368888777653 688998888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. .. .+..++++|+||.|+.+|.|+ ||++++++
T Consensus 178 PTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~~i~~~~ 256 (399)
T PRK07681 178 PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRI-GYMIGNEE 256 (399)
T ss_pred CcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcccee-EEEecCHH
Confidence 9999987 6788889999999999999997664321 11 135799999999999899997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+..... ....+.+.+.+.++..++... .++....+.+.++++.+.+.|++.+.++..|.
T Consensus 257 l~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~--------------- 320 (399)
T PRK07681 257 IVRALTQFKS-NTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPA--------------- 320 (399)
T ss_pred HHHHHHHHHh-hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC---------------
Confidence 9999887654 111333444555555555442 34555566678899999999999876654454
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|.++|+++++.....++.+.+.
T Consensus 321 ----~g~f~~~~l~~~~~~~~~~~~l~ 343 (399)
T PRK07681 321 ----GSMFVWAEIPKGWTSLSFAYALM 343 (399)
T ss_pred ----eeeEEEEECCCCCCHHHHHHHHH
Confidence 68899999974334455666654
No 51
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.97 E-value=5.2e-30 Score=231.63 Aligned_cols=219 Identities=19% Similarity=0.212 Sum_probs=165.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----------CCHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----------SDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----------~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++++++++||+|++++|+|+.+...++ ..|.++..++. .|++++++++ ++++++|++++
T Consensus 113 ~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~ 186 (405)
T PRK06207 113 GALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQLDYLSADKRAGLDLDQLEEAF-KAGVRVFLFSN 186 (405)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccCcccCCCcCHHHHHHhh-hhcCeEEEECC
Confidence 57888999999999999999999999988774 25666665543 2789999998 77899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-c----CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-A----RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||||||.+.+ +++|+++|+++|+++|+||+|..+.++ + . ..+..++++|+||.|+.+|+|+ ||+++
T Consensus 187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRi-G~ii~ 265 (405)
T PRK06207 187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRL-GVAFG 265 (405)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccce-EEEEc
Confidence 9999999986 678889999999999999999765421 1 1 1245699999999999899997 99999
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHH
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~ 216 (324)
++++++.+...... ...+.+.+.+.++..++... .+++.+++++.++++.+.+.|++. +..+..|.
T Consensus 266 ~~~l~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~----------- 333 (405)
T PRK06207 266 SPAIIDRMEKLQAI-VSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQ----------- 333 (405)
T ss_pred CHHHHHHHHHHHhH-hccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC-----------
Confidence 99999999876651 11222334444444445432 346677777888899999999876 34444343
Q ss_pred HHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 217 SMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
+|.++|++++. ..+...|.+.+.
T Consensus 334 --------gg~fl~~~l~~~~~~~~~~~~~l~ 357 (405)
T PRK06207 334 --------AGSYLFPRLPRLAVSLHDFVKILR 357 (405)
T ss_pred --------eeEEEEEeCcccCCCHHHHHHHHH
Confidence 68899999973 223556777664
No 52
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.97 E-value=4.2e-30 Score=231.25 Aligned_cols=218 Identities=17% Similarity=0.162 Sum_probs=165.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++.++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|||
T Consensus 102 ~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~G~~v~~v~~~~~~g~~~d~~~l~~~~-~~~~~~v~i~~P~N 175 (383)
T TIGR03540 102 EGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTL-----FAGGEPYEMPLKEENGFLPDFDAIPEDI-AKKAKLMFINYPNN 175 (383)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcchHHHHH-----hcCCEEEEEecCcccCCccCHHHHHhhc-cccceEEEEeCCCC
Confidence 57888999999999999999999999988773 367777766542 688998888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---c---C----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A---R----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~---~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+++ +++|+++|+++|+++|+||+|..+.+.. . . .+.+++++|+||.||.+|+|+ ||++++++
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~i~~~~ 254 (383)
T TIGR03540 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRI-GMAVGNAD 254 (383)
T ss_pred CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcccee-eEEeCCHH
Confidence 9999987 6788999999999999999996553211 1 1 135688999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+....... ..+.+.+.+..+..++... .+++...+++.++++.+.+.|++.+..+..|.
T Consensus 255 l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--------------- 318 (383)
T TIGR03540 255 LIAGLGKVKTNV-DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPK--------------- 318 (383)
T ss_pred HHHHHHHHHHhc-ccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCC---------------
Confidence 999887765411 1122334444444444442 34555666778999999999999876655443
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+.+++..+...|.+.+
T Consensus 319 ----~~~~~~~~l~~~~~~~~~~~~l 340 (383)
T TIGR03540 319 ----ATFYVWVPVPEGYTSAEFAARL 340 (383)
T ss_pred ----cceEEEEECCCCCCHHHHHHHH
Confidence 5677899997444456677665
No 53
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.97 E-value=7.5e-30 Score=232.78 Aligned_cols=217 Identities=17% Similarity=0.158 Sum_probs=167.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEe-cCCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNP 75 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~-~~~np 75 (324)
++||..+++++++|||.|++++|+|+.+...++ ..|.++..++.+ |++++++++ +.++++++++ +||||
T Consensus 151 ~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~g~~~~~l~~~~-~~~~k~i~~~p~p~NP 224 (431)
T PRK15481 151 IDAIERLLCAHLLPGDSVAVEDPCFLSSINMLR-----YAGFSASPVSVDAEGMQPEKLERAL-AQGARAVILTPRAHNP 224 (431)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCeEEeeccCCCCCCHHHHHHHH-hcCCCEEEECCCCCCC
Confidence 368889999999999999999999999998884 367777777653 789999998 6688998886 89999
Q ss_pred cccccChH---HHHHHHHhc-CCEEEEcCCCCcCCCC----cc--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 76 TLAVANIP---ELSRLAHDK-GVTVVVDNTFSPLVLS----PA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 76 tG~~~~~~---~i~~l~~~~-~~~~ivD~~~~~~~~~----~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||.+.+.+ +|.++|+++ +++||+||+|..+... +. ..+..++++||||.|+ +|+|+ ||+++++++.+.
T Consensus 225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRi-G~~i~~~~~~~~ 302 (431)
T PRK15481 225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRL-AFVASDSATSAR 302 (431)
T ss_pred CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CCcee-EEEeCCHHHHHH
Confidence 99998865 999999999 9999999999665421 12 1246799999999998 89997 999999999988
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+..... ....+.+.+.+.++..++..... +....+.+.++++.+.+.|++.+..+..|.
T Consensus 303 ~~~~~~-~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~----------------- 364 (431)
T PRK15481 303 LRLRLN-SGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPG----------------- 364 (431)
T ss_pred HHHHHh-ccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-----------------
Confidence 876544 11123344555555555554322 445667789999999999999876554455
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|.++|+.++. ....+.+.+.
T Consensus 365 --gg~f~~~~l~~--~~~~~~~~l~ 385 (431)
T PRK15481 365 --DGLNLWLPLDT--DSQATALTLA 385 (431)
T ss_pred --CeEEEEEECCC--CHHHHHHHHH
Confidence 68999999973 2345666655
No 54
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.97 E-value=9.4e-30 Score=229.13 Aligned_cols=219 Identities=15% Similarity=0.190 Sum_probs=165.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++++++.+ |++++++++ ++++++|++++|+|||
T Consensus 100 ~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~klv~~~~p~NPt 173 (389)
T PRK05957 100 MAFMNAILAITDPGDEIILNTPYYFNHEMAIT-----MAGCQPILVPTDDNYQLQPEAIEQAI-TPKTRAIVTISPNNPT 173 (389)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-----hcCCEEEEeecCCCCCcCHHHHHHhc-CcCceEEEEeCCCCCC
Confidence 56777888889999999999999998877663 268888777653 789999999 7789999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A----RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
|.+.+ +++|+++|+++|+++|+||+|..+.+.. . .....+++.|+||.||.+|+|+ ||++.+++++
T Consensus 174 G~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~~ 252 (389)
T PRK05957 174 GVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRI-GYMVIPIHLL 252 (389)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCcccee-EEEecCHHHH
Confidence 99987 8889999999999999999996554321 1 1135699999999999999997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhc
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+...... ...+.+.+.+..+...+.. ..++++..+++.++++.+.+.|++.+. .+..|.
T Consensus 253 ~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~--------------- 316 (389)
T PRK05957 253 EAIKKIQDT-ILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPAN--------------- 316 (389)
T ss_pred HHHHHHHhh-cccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC---------------
Confidence 999876641 1122233444444444443 234566667788999999999988643 222222
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|.++|++++...+..++++.+.
T Consensus 317 ----gg~~~~~~~~~~~~~~~~~~~l~ 339 (389)
T PRK05957 317 ----GAFYCFLKVNTDLNDFELVKQLI 339 (389)
T ss_pred ----eeEEEEEeCCCCCChHHHHHHHH
Confidence 57788999874444566777764
No 55
>PRK07324 transaminase; Validated
Probab=99.97 E-value=1.2e-29 Score=226.99 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=165.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|..+...++ ..|.+++.++.+ |++++++.+ ++++|+|++++|+|
T Consensus 91 ~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~d~~~l~~~~-~~~~kli~i~~p~N 164 (373)
T PRK07324 91 GANFLVLYALVEPGDHVISVYPTYQQLYDIPE-----SLGAEVDYWQLKEENGWLPDLDELRRLV-RPNTKLICINNANN 164 (373)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHhC-CCCCcEEEEeCCCC
Confidence 57888999999999999999999999987773 367777777642 789998888 78899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++|+++|+||+|.++.... .+. +..++++|+||.||++|+|+ ||+++++++++.
T Consensus 165 PtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~Ri-G~i~~~~~li~~ 243 (373)
T PRK07324 165 PTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRV-GWIAANEEVIDI 243 (373)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCcccee-EEEecCHHHHHH
Confidence 9999987 8899999999999999999997665432 111 45689999999999999997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+..... ....+.+.+.+..+..++...+. +....+.+.++++.+.+.|++.+. .+..|.
T Consensus 244 ~~~~~~-~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~------------------ 304 (373)
T PRK07324 244 LRKYRD-YTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPK------------------ 304 (373)
T ss_pred HHHHhC-cEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCC------------------
Confidence 988765 22234455555555545543332 334445567888889999987743 455454
Q ss_pred CcceEEEEEeCCHHHHHHHHHHh
Q 020548 224 GFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|+++++.++......+|++++
T Consensus 305 -gg~~~~i~~~~~~~~~~~~~~l 326 (373)
T PRK07324 305 -AVSTSFVKLDVDMPSEDFCLKL 326 (373)
T ss_pred -ceEEEEEEeCCCCCHHHHHHHH
Confidence 4566677776333456677765
No 56
>PLN00175 aminotransferase family protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=229.21 Aligned_cols=219 Identities=18% Similarity=0.224 Sum_probs=168.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.++++|||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|+||
T Consensus 126 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~l~~~~-~~~~k~i~i~~p~NP 199 (413)
T PLN00175 126 EAIAATILGLINPGDEVILFAPFYDSYEATLS-----MAGAKIKTVTLRPPDFAVPEDELKAAF-TSKTRAILINTPHNP 199 (413)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEECCcccCCCCHHHHHHhc-CcCceEEEecCCCCC
Confidence 57888888899999999999999999988774 367777777642 689999998 778999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR----LGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+ +++|+++|+++++++|+||+|..+.++. .. .+..++++|+||.|+++|+|+ ||++++++++
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~Ri-G~~v~~~~l~ 278 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHLT 278 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchhe-eeeEeCHHHH
Confidence 999975 6788999999999999999996654321 11 246799999999999999997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+.+..... ....+.+.+.+.++..++... .++....+.+.++++.+.+.|++++..+..|.
T Consensus 279 ~~l~~~~~-~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~----------------- 340 (413)
T PLN00175 279 WGVRQAHS-FLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSS----------------- 340 (413)
T ss_pred HHHHHHHh-hccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-----------------
Confidence 98887654 222444555666655555443 33556667789999999999999876655444
Q ss_pred CCcceEEEEEeC--CHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDME--TEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~--~~~~~~~~~~~l~ 247 (324)
+|.++|+.+. +.....+|.+.+.
T Consensus 341 --g~~f~~~~~~~~~~~~~~~~~~~ll 365 (413)
T PLN00175 341 --GTYFVMVDHTPFGFENDIAFCEYLI 365 (413)
T ss_pred --eeEEEEEeccccCCCCHHHHHHHHH
Confidence 5677888874 2223456666653
No 57
>PRK08068 transaminase; Reviewed
Probab=99.97 E-value=8.1e-30 Score=229.72 Aligned_cols=258 Identities=14% Similarity=0.169 Sum_probs=183.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|||
T Consensus 105 ~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~N 178 (389)
T PRK08068 105 AGLVELPQCLMNPGDTILVPDPGYPDYLSGVA-----LARAQFETMPLIAENNFLPDYTKIPEEV-AEKAKLMYLNYPNN 178 (389)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEeecccccCCCCCHHHHHHhc-cccceEEEEECCCC
Confidence 57788888899999999999999999988774 367777776652 678898888 67899999999999
Q ss_pred CcccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+. ++|+++|+++++++|+||+|..+.++. .. .+..++++|+||.||.+|.|+ ||++++++
T Consensus 179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~ 257 (389)
T PRK08068 179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRV-AFAVGNES 257 (389)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcccee-EeEecCHH
Confidence 99999875 577888999999999999996553221 11 135699999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCC--CHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 142 LVNSMMDLHQGALMLLGPTM--NPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
+++.+...... ...+.+ .+.++...+. ...+++..++++.++++.+.+.|++.+..+..|.
T Consensus 258 l~~~l~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~------------- 321 (389)
T PRK08068 258 VIEAINLLQDH---LFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIGWEVDAPK------------- 321 (389)
T ss_pred HHHHHHHHHhh---ccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC-------------
Confidence 99999877652 222222 2333333332 2344566677789999999999999876544333
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
+|.++|+.+++......+.+.+.. +.|+ .+.|+..+. ...++++|++++
T Consensus 322 ------g~~~~~v~~~~~~~~~~~~~~l~~--~~gi-----------~v~pg~~f~-----------~~~~~~iRi~~~- 370 (389)
T PRK08068 322 ------GSFFAWMPVPKGYTSEQFADLLLE--KAHV-----------AVAPGNGFG-----------EHGEGYVRVGLL- 370 (389)
T ss_pred ------eeEEEEEECCCCCCHHHHHHHHHH--hCCE-----------EEecchHhC-----------ccCCCeEEEEEc-
Confidence 466789999743345667777652 1232 223332210 112479999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~ 318 (324)
..+ +.+.++++++.+
T Consensus 371 ~~~-----~~l~~al~~l~~ 385 (389)
T PRK08068 371 TDE-----ERLREAVERIGK 385 (389)
T ss_pred CCH-----HHHHHHHHHHHH
Confidence 532 456666666654
No 58
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.8e-30 Score=223.34 Aligned_cols=217 Identities=16% Similarity=0.173 Sum_probs=175.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+.|..++++++.+||+|+++.|+|..|...++ ..|.++..++. .|++.+.+++ ++++++|++++||||||
T Consensus 86 e~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~-----~~g~~~~~v~~~~~~~d~~~~~~~~-~~~~~lv~i~nPNNPTG 159 (356)
T COG0079 86 ELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-----LAGAEVVKVPLKEFRLDLDAILAAI-RDKTKLVFLCNPNNPTG 159 (356)
T ss_pred HHHHHHHHHhhcCCCEEEEcCCChHHHHHHHH-----hcCCeEEEecccccccCHHHHHHhh-hcCCCEEEEeCCCCCCC
Confidence 46788889999999999999999999998884 47888888877 4789999988 66899999999999999
Q ss_pred cccChHHHHHHHHhc--CCEEEEcCCCCcCCCC-cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 78 AVANIPELSRLAHDK--GVTVVVDNTFSPLVLS-PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~-~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
...+.++|.+++... +.++|+||+|.+|... .. ..++.+++.||||.||.+|.|+ ||+++++++++.+.+.+
T Consensus 160 ~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRl-Gy~ia~~~~i~~l~~vr 238 (356)
T COG0079 160 TLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRV-GYAIANPELIAALNKVR 238 (356)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhce-eeccCCHHHHHHHHHhc
Confidence 999888887777653 7899999999777541 11 2355799999999999999997 99999999999999998
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
.+ +..+.+.+..+..++...+.+....++..+.++++.+.|++.+..-..|+ .++|+.
T Consensus 239 ~p---~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS-------------------~aNFvl 296 (356)
T COG0079 239 PP---FNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPS-------------------QANFVL 296 (356)
T ss_pred CC---CCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC-------------------CCcEEE
Confidence 73 44555666555555555566777888889999999999999984323466 478999
Q ss_pred EEeCCHHHHHHHHHHhhc
Q 020548 231 LDMETEEKANRLMNYLQN 248 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~ 248 (324)
++++... ...+.+.|..
T Consensus 297 v~~~~~~-~~~l~~~L~~ 313 (356)
T COG0079 297 VRVPDAE-AAALAEALLK 313 (356)
T ss_pred EECCCcc-HHHHHHHHHH
Confidence 9998634 5566777664
No 59
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=230.68 Aligned_cols=265 Identities=20% Similarity=0.226 Sum_probs=197.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEe-cCCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNP 75 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~-~~~np 75 (324)
|+|++.+++.+++|||+|++.+|+|++....++ ..|.++..++.+ |+++|++.++..++|+++++ +.|||
T Consensus 165 q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~-----~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNP 239 (459)
T COG1167 165 QQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-----ALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNP 239 (459)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-----HcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCC
Confidence 478999999999999999999999999999994 378888888775 89999999966689999985 49999
Q ss_pred cccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCCccC---------CCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSPAR---------LGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~~~~---------~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+++. ++|.++|++||++||+||.|+.+.++... .+..++++||||.+ .||.|+ ||++++++++
T Consensus 240 tG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l-~PglRl-G~vv~p~~~~ 317 (459)
T COG1167 240 TGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTL-APGLRL-GYVVAPPELI 317 (459)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhc-ccccce-eeeeCCHHHH
Confidence 9999874 59999999999999999999777543211 26889999999999 569997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCC---ceeCCCCCCCchhHHHHH
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~p~~~~~~~~~~~~~ 217 (324)
+.+..... .....++.+.+...+..+..- .++...++.+.++++.+.+.|+++.. .+..|.
T Consensus 318 ~~~~~~k~-~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~------------ 384 (459)
T COG1167 318 EKLLRLKQ-AADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPE------------ 384 (459)
T ss_pred HHHHHHHH-HhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCC------------
Confidence 99987765 333455556655555555421 22344555679999999999999853 455554
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccc-cccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS-GSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
+|.++|++++...+...+.+.+.. .|+ ...| +..+.. .+...+.+|+|+
T Consensus 385 -------gG~flwl~l~~~~~~~~l~~~a~~---~gv-----------~i~~~g~~f~~---------~~~~~~~~Rl~~ 434 (459)
T COG1167 385 -------GGLFLWLELPEGIDARELLAAALE---KGV-----------VVTPLGSAFSA---------DGDPRNGLRLSF 434 (459)
T ss_pred -------ceEEEEEEcCCCCCHHHHHHHHHH---CCC-----------EEEcCCccccC---------CCCCCCeEEEEc
Confidence 689999999966566677776663 222 1122 222211 011356999999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 020548 297 GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ..+.+++.+.+....+.+
T Consensus 435 s-~~~~e~i~~gi~~l~~~~ 453 (459)
T COG1167 435 S-SPSEEEIEEGIKRLAALL 453 (459)
T ss_pred C-CCCHHHHHHHHHHHHHHH
Confidence 9 777666655555544444
No 60
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.97 E-value=9.2e-30 Score=229.36 Aligned_cols=216 Identities=13% Similarity=0.138 Sum_probs=160.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ ..+++++++++|||
T Consensus 103 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~p~N 176 (388)
T PRK07366 103 EGTAHLPLAVLNPGDFALLLDPGYPSHAGGVY-----LAGGQIYPMPLRAENDFLPVFADIPTEV-LAQARLMVLSYPHN 176 (388)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEECCCccCCCCCHHHHHHhh-cccceEEEEeCCCC
Confidence 57888999999999999999999999988874 367777776553 567887777 66899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCC----CCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARL----GADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++. ... ...++++|+||.||.+|.|+ ||+++++
T Consensus 177 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRi-G~~v~~~ 255 (388)
T PRK07366 177 PTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRI-GFAIGNA 255 (388)
T ss_pred CCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhh-eehcCCH
Confidence 9999976 5577788999999999999997664321 111 24588999999999999997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCC--HHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMN--PKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
++++.+...... ...+..+ +..+...+. ...+++..++.+.++++.+.+.|++++..+..|.
T Consensus 256 ~li~~l~~~~~~---~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~------------ 320 (388)
T PRK07366 256 QLIQALRQVKAV---VDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPE------------ 320 (388)
T ss_pred HHHHHHHHHHhh---cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC------------
Confidence 999999877652 1112212 222222222 2234556667789999999999998876544454
Q ss_pred HhccCCCcceEEEEEeCCH--HHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETE--EKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l 246 (324)
+|.++|+++++. ....++.+.+
T Consensus 321 -------~g~f~~~~~~~~~~~~~~~~~~~l 344 (388)
T PRK07366 321 -------ATMYVWAKLPEPWQGNSVEFCTQL 344 (388)
T ss_pred -------eeEEEEEECCcccCCCHHHHHHHH
Confidence 688999999742 1244565554
No 61
>PRK12414 putative aminotransferase; Provisional
Probab=99.97 E-value=7.4e-29 Score=222.93 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=158.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++.+||+|++++|+|..+...++ ..|.++..++.+ |++++++++ ++++++|++++|+||
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~NP 174 (384)
T PRK12414 101 EGLYAAISALVHPGDEVIYFEPSFDSYAPIVR-----LQGATPVAIKLSPEDFRVNWDEVAAAI-TPRTRMIIVNTPHNP 174 (384)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HcCCEEEEEecCccccccCHHHHHhhc-CcccEEEEEcCCCCC
Confidence 57888899999999999999999999887774 256666666542 789999988 778999999999999
Q ss_pred ccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-C----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+. ++++|+++|+++|+++|+||+|..+.++ +. . .+..++++|+||.||.+|+|+ ||+++++++
T Consensus 175 TG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRi-G~~v~~~~l 253 (384)
T PRK12414 175 SATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRV-GYCLAPAEL 253 (384)
T ss_pred CCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceE-EEEecCHHH
Confidence 99986 4778899999999999999999665432 11 1 135699999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
++.+..... ....+.+.+.+.++..++..........+.++++++.+.+.|++.+..+..|.
T Consensus 254 ~~~l~~~~~-~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~----------------- 315 (384)
T PRK12414 254 MDEIRKVHQ-FMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSRFELLPSE----------------- 315 (384)
T ss_pred HHHHHHHHh-heecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCCCeecCCC-----------------
Confidence 998887654 12244455666555555544333444556678999999999999876554333
Q ss_pred CCcceEEEEEeC
Q 020548 223 YGFGGLLCLDME 234 (324)
Q Consensus 223 ~~~g~~~~~~l~ 234 (324)
+|.++|+.++
T Consensus 316 --gg~~~~~~~~ 325 (384)
T PRK12414 316 --GSFFMLARFR 325 (384)
T ss_pred --cceEEEEccc
Confidence 5677777775
No 62
>PRK08960 hypothetical protein; Provisional
Probab=99.97 E-value=8e-29 Score=223.13 Aligned_cols=218 Identities=20% Similarity=0.223 Sum_probs=161.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++++|||+|++++|+|+.+...+. ..|.++..++. .|++++++++ +++++++++++|||
T Consensus 103 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~N 176 (387)
T PRK08960 103 GALLLASSLLVDPGKHWLLADPGYPCNRHFLR-----LVEGAAQLVPVGPDSRYQLTPALVERHW-NADTVGALVASPAN 176 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCeEEEEecCcccCCCCCHHHHHHHh-CccceEEEEECCCC
Confidence 57888899999999999999999999988774 24556555543 2688999988 77889999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ... ...++++|+||.+|++|.|+ ||+++++++++.
T Consensus 177 PtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~~~~~~~~~~ 255 (387)
T PRK08960 177 PTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRL-GWLVAPPAAVPE 255 (387)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEE-EEEEcCHHHHHH
Confidence 9999987 5577778999999999999996664321 112 35689999999999999997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcC-c-ccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSER-I-PHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+...... ...+.+.+.+.++..++.. . ..+....+.+.++++.+.+.|++++..+ ..|.
T Consensus 256 ~~~~~~~-~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~----------------- 317 (387)
T PRK08960 256 LEKLAQN-LYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQ----------------- 317 (387)
T ss_pred HHHHHhh-hccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCC-----------------
Confidence 8776541 1123344555544444432 2 3344556667889999999999887543 2344
Q ss_pred CCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 223 YGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 223 ~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|++++. ..+...|.+.+
T Consensus 318 --g~~f~~~~~~~~~~~~~~~~~~l 340 (387)
T PRK08960 318 --GAFYLYADISAFGGDAFAFCRHF 340 (387)
T ss_pred --eeEEEEEeccccCCCHHHHHHHH
Confidence 57788999863 12345666554
No 63
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-29 Score=221.90 Aligned_cols=274 Identities=19% Similarity=0.233 Sum_probs=202.1
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
.||+.+..++ +++||+|++++-+|++....|+....+ .|.++++++.+ +.+++++.+ +++||+|.+++.+
T Consensus 95 ~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~-~Ga~v~~i~~~~~g~~~~~~~~~~i-~~~Tklvais~vS 172 (405)
T COG0520 95 EALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR-TGAKVRVIPLDDDGLLDLDALEKLI-TPKTKLVALSHVS 172 (405)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHh-cCcEEEEEecCCCCCcCHHHHHHhc-CCCceEEEEECcc
Confidence 4788888888 689999999999999999999888776 79999998864 689999988 9999999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.||.+.|+++|+++||++|+++++|.+| .....+..++++|++++|.|||+.+|.+ .|++++++++.+.+.+...
T Consensus 173 n~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~G--iGvLy~r~~~l~~l~P~~~ 250 (405)
T COG0520 173 NVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTG--IGVLYVRKELLEELEPFLG 250 (405)
T ss_pred ccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCc--eEEEEEchHHHhhcCCccc
Confidence 99999999999999999999999999998 3344566677999999999997666622 5999999999998855332
Q ss_pred h------------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCC
Q 020548 152 G------------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLE 207 (324)
Q Consensus 152 ~------------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~ 207 (324)
+ ...+..+++.......+...++. +....++.++..+++.+.|++.+. ++..|..
T Consensus 251 gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~- 329 (405)
T COG0520 251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD- 329 (405)
T ss_pred CCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-
Confidence 1 12233344433332222222222 223334458888999999999875 6665551
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 285 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (324)
..++++++|.+++ ..+...+++.-++ ++..|..+ +.+.+ +..
T Consensus 330 ---------------~~r~~~vsF~v~~~~~~dv~~~L~~~gI-------~vr~g~~c------a~p~~--------~~~ 373 (405)
T COG0520 330 ---------------ADRGGIVSFNVKGIHPHDVATLLDEKGI-------AVRAGHHC------AQPLH--------RLL 373 (405)
T ss_pred ---------------ccCceEEEEEeCCCCHHHHHHHHHhCCe-------EEEecccc------ccHHH--------Hhc
Confidence 0268899999984 3445555555443 44444332 22111 112
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+.+ ..+|+|++ .+|++++++.|.++|+++.+
T Consensus 374 ~~~-~~iR~S~~-~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 374 GVD-ATIRASLH-LYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred CCC-CceEEEEe-ecCCHHHHHHHHHHHHHHhh
Confidence 333 45999999 99999999999999998753
No 64
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.97 E-value=4.2e-29 Score=224.95 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=161.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++..++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|||
T Consensus 104 ~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~N 177 (385)
T PRK09276 104 EGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTI-----FAGGEPYFMPLKEENGFLPDLDAIPEDV-AKKAKLMFINYPNN 177 (385)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcChHHHHH-----HcCCEEEEEecCCCCCCcCCHHHHHHhc-cccceEEEEeCCCC
Confidence 57888889999999999999999999988774 367777666542 688888888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-AR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++ + .. .+.+++++|+||.||.+|.|+ ||++++++
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~i~~~~ 256 (385)
T PRK09276 178 PTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRI-GFAVGNAD 256 (385)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhh-eeeeCCHH
Confidence 9999987 578888999999999999999655321 1 11 145689999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+...... ...+.+.+.+..+..++.. ..+++...+++.++++.+.+.|++.+.++..|.
T Consensus 257 l~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------------- 320 (385)
T PRK09276 257 LIAGLGKVKSN-VDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPK--------------- 320 (385)
T ss_pred HHHHHHHHHhh-ccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---------------
Confidence 99998876541 1111222333344444433 233455566678889999999998866554343
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+.+++..+..++.+.+
T Consensus 321 ----~~~~~~v~~~~~~~~~~l~~~l 342 (385)
T PRK09276 321 ----ATFYVWAPVPKGYTSAEFATLL 342 (385)
T ss_pred ----cceEEEEECCCCCCHHHHHHHH
Confidence 4667899987433455666654
No 65
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.97 E-value=6.3e-29 Score=220.84 Aligned_cols=218 Identities=20% Similarity=0.186 Sum_probs=165.7
Q ss_pred chHHHHHHHccCCC---CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++.+++++| |+|++++|+|+.+...++ ..|.++..++.+ |++++++++ +++++++++++
T Consensus 71 ~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~ 144 (350)
T TIGR03537 71 EAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGAL-----FAGGEPTAVKLKKEDGFLLRLEKVEKSI-LEETKIVWINY 144 (350)
T ss_pred HHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHH-----hcCCEEEEcccCcccCCccCHHHHHHhh-hhccEEEEEeC
Confidence 47888888889887 699999999999998884 378888777652 789999988 67899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c---c--CCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P---A--RLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~---~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|+||||.+.+ +++|+++|+++|+++|+||+|..+... + . +.+..+++.|+||.+|++|.|+ ||++++++
T Consensus 145 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRi-G~~~~~~~ 223 (350)
T TIGR03537 145 PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRS-GFVAGDEK 223 (350)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccc-eeeecCHH
Confidence 9999999987 889999999999999999999654321 1 1 2246799999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCC--CHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTM--NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+.+.+...... ...+.+ .+..+...+....++....+++.++++.+.+.|++.+.++..|.
T Consensus 224 ~~~~~~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~-------------- 286 (350)
T TIGR03537 224 LISFLRKLRAN---FGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPD-------------- 286 (350)
T ss_pred HHHHHHHHHHh---hccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC--------------
Confidence 99988876652 122222 22333233333334555666778889999999998876554343
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|.++|+.++.......+++.+..
T Consensus 287 -----g~~~~~~~~~~~~~~~~l~~~L~~ 310 (350)
T TIGR03537 287 -----ATFYLWVKVPSGIDAKDYALRLLE 310 (350)
T ss_pred -----eEEEEEEECCCCCCHHHHHHHHHH
Confidence 566789999754345677777764
No 66
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.97 E-value=5.6e-29 Score=224.54 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=160.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++++|||+|++++|+|+.+...+. ..|.++..++.+ |++++++.+ +++++++++++|+|
T Consensus 108 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~P~N 181 (394)
T PRK05942 108 EGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL-----IAGAQIYPIILKPENDWLIDLSSIPEEV-AQQAKILYFNYPSN 181 (394)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEEEeecCCccCCccCHHHHHHhc-cccceEEEEcCCCC
Confidence 57888888899999999999999999887663 267777776542 788999988 78999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-C----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|.++|+++|+++|+||+|..+..+ +. . .+..++++|+||.|+.+|.|+ ||++++++
T Consensus 182 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRi-G~i~~~~~ 260 (394)
T PRK05942 182 PTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRV-GFVVGNRH 260 (394)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhhe-eeeecCHH
Confidence 9999987 778889999999999999999655432 11 1 134688999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+...... ...+.+++.+..+..++.... .+....+++.++++.+.+.|++.+..+..|.
T Consensus 261 l~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--------------- 324 (394)
T PRK05942 261 IIQGLRTLKTN-LDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTK--------------- 324 (394)
T ss_pred HHHHHHHHHhh-cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC---------------
Confidence 99999876541 112233344444444454332 2445556678889999999988776544333
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHH
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMN 244 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~ 244 (324)
+|.++|+.++......++..
T Consensus 325 ----~~~f~~~~~~~~~~~~~~~~ 344 (394)
T PRK05942 325 ----ATMYLWVPCPVGMGSTDFAL 344 (394)
T ss_pred ----eeeEEEEECCCCCCHHHHHH
Confidence 56689999874222334444
No 67
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=6e-29 Score=222.89 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=184.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++.++++++|++++|+|||
T Consensus 114 ~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPT 188 (380)
T PLN03026 114 ELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA-----VNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPD 188 (380)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 47788888889999999999999998877663 268887777652 78999888755789999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.+.+.+++.++++.. +++|+||+|..+.... ...++.++++|+||.||++|+|+ ||+++++++++.+....
T Consensus 189 G~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRi-Gy~~~~~~~i~~l~~~~ 266 (380)
T PLN03026 189 GSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRV-GYGAFPLSIIEYLWRAK 266 (380)
T ss_pred CCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccc-eeeecCHHHHHHHHHhc
Confidence 9999999999999765 8999999996654321 12357899999999999999997 99999999999888766
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
.. +..+.+.+.++..++....++....+.+.++++.+.+.|++.+.....|. .|++++
T Consensus 267 ~~---~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-------------------~~~f~~ 324 (380)
T PLN03026 267 QP---YNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEPYPS-------------------DANFIL 324 (380)
T ss_pred CC---CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCC-------------------CCeEEE
Confidence 52 23344444554445544344556666778899999999998865222454 578999
Q ss_pred EEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 231 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.++...+...+.+.+.. .|+ .+ .+... .+ .++++|+|+| . .+..+.|.
T Consensus 325 ~~~~~~~~~~~~~~~l~~---~gI-~v----------~~~~~------------~~-~~~~lRis~~-~---~~~~~~l~ 373 (380)
T PLN03026 325 CRVTSGRDAKKLKEDLAK---MGV-MV----------RHYNS------------KE-LKGYIRVSVG-K---PEHTDALM 373 (380)
T ss_pred EECCCCCCHHHHHHHHHH---CCe-EE----------EECCC------------CC-CCCEEEEecC-C---HHHHHHHH
Confidence 998743335566666653 333 11 11110 01 1478999999 3 23456666
Q ss_pred HHHHh
Q 020548 311 KALSR 315 (324)
Q Consensus 311 ~~l~~ 315 (324)
++|+.
T Consensus 374 ~al~~ 378 (380)
T PLN03026 374 EALKQ 378 (380)
T ss_pred HHHHH
Confidence 66654
No 68
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=216.19 Aligned_cols=206 Identities=24% Similarity=0.322 Sum_probs=167.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~ 68 (324)
+||..++++++++||+|++.+|.|+.|....+ +.|...++++.. |.++++.++ +++||+|+
T Consensus 104 ~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~-----maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~-t~kTk~Ii 177 (420)
T KOG0257|consen 104 EAISSALLGLLNPGDEVIVFEPFFDCYIPQVV-----MAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKI-TEKTKAII 177 (420)
T ss_pred HHHHHHHHHHcCCCCEEEEecCcchhhhhHHh-----hcCCcceeeccccccccccCccccCChHHHHhhc-cCCccEEE
Confidence 57888899999999999999999999998883 466666666542 899999999 99999999
Q ss_pred EecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCccC----------CCCcEEEeCCccccccCCCeeEEE
Q 020548 69 FESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPAR----------LGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 69 ~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~----------~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+++||||||.+. .+++|+++|++||.++|.||+|..+..++.+ ....+-++|++|+||+.|+|+ ||
T Consensus 178 ~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrl-GW 256 (420)
T KOG0257|consen 178 LNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRL-GW 256 (420)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeee-ee
Confidence 999999999996 4889999999999999999999666554432 257899999999999999998 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-Cc--------ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RI--------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
+++++.++..+....+ ...+..+++.+.+.+.+.. .. .......+.++++++.+.+.|.+.|+++..|.
T Consensus 257 ~igp~~L~~~~~~vh~-~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~- 334 (420)
T KOG0257|consen 257 AIGPKHLYSALFPVHQ-NFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPE- 334 (420)
T ss_pred eechHHhhhhHHHHhh-ccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-
Confidence 9999999999988876 2234445555554444322 11 22345778899999999999999999888777
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
++.++|.++.
T Consensus 335 ------------------gayyl~adfs 344 (420)
T KOG0257|consen 335 ------------------GAYYLWADFS 344 (420)
T ss_pred ------------------CceEEEEecc
Confidence 6888888887
No 69
>PRK07682 hypothetical protein; Validated
Probab=99.97 E-value=6.1e-29 Score=223.34 Aligned_cols=218 Identities=19% Similarity=0.249 Sum_probs=164.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..+++++++|||+|++++|+|+.+...++ ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 92 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~N 165 (378)
T PRK07682 92 QALDVAMRAIINPGDEVLIVEPSFVSYAPLVT-----LAGGVPVPVATTLENEFKVQPAQIEAAI-TAKTKAILLCSPNN 165 (378)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEeecCCccCCCCCHHHHHhhc-CcccEEEEEECCCC
Confidence 57888999999999999999999999887774 25666555543 2789999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|+++++++|+||+|..+.+++ .. .+.++++.|+||.|+.+|+|+ ||+++++++
T Consensus 166 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~~~~~~~~ 244 (378)
T PRK07682 166 PTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRL-GFIAAPVYF 244 (378)
T ss_pred CcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhh-hhhhcCHHH
Confidence 9999975 7789999999999999999997664321 11 146799999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++... .++....+.++++++.+.+.|++++..+..|.
T Consensus 245 i~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~---------------- 307 (378)
T PRK07682 245 SEAMLKIHQ-YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG---------------- 307 (378)
T ss_pred HHHHHHHHH-hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCC----------------
Confidence 999877654 212233444454444455432 33555667789999999999999876655444
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 222 EYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|..++. ..+...+.+.+
T Consensus 308 ---g~~~~~~~~~~~~~~~~~~~~~l 330 (378)
T PRK07682 308 ---GAFYAFPSISSTGLSSEEFAEQL 330 (378)
T ss_pred ---eeEEEEEeccCCCCCHHHHHHHH
Confidence 56677777742 22345666664
No 70
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.97 E-value=1.4e-28 Score=221.58 Aligned_cols=218 Identities=18% Similarity=0.155 Sum_probs=163.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ +++++++++++|+
T Consensus 95 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~p~ 168 (382)
T PRK06108 95 QALMLAAQALVGPGDEVVAVTPLWPNLVAAPK-----ILGARVVCVPLDFGGGGWTLDLDRLLAAI-TPRTRALFINSPN 168 (382)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HCCCEEEEeeCCCCCCCccCCHHHHHHhc-CccceEEEEECCC
Confidence 57888888889999999999999999887774 267777776552 689999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---c----cC----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P----AR----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+.+ +++|+++|+++|+++|+||+|..+... . .. .+.+++++|+||.|+++|.|+ ||++++
T Consensus 169 NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~~~~~ 247 (382)
T PRK06108 169 NPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRL-GWLVAP 247 (382)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccce-eeeeCC
Confidence 99999875 678899999999999999999665432 0 11 146799999999999999997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+..... ....+.+.+.+.++..++... ..++...+++.++++.+.+.|++. +..+..|.
T Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------------ 314 (382)
T PRK06108 248 PALGQVLEKLIE-YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPD------------ 314 (382)
T ss_pred HHHHHHHHHHHH-hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC------------
Confidence 999998876654 111223334444444444432 335566677788899999999887 34444333
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+.+++..+...+.+.+
T Consensus 315 -------~g~~~~~~l~~~~~~~~~~~~l 336 (382)
T PRK06108 315 -------GAMYAFFRIPGVTDSLALAKRL 336 (382)
T ss_pred -------eeEEEEEeCCCCCCHHHHHHHH
Confidence 5667899987433455666665
No 71
>PRK09082 methionine aminotransferase; Validated
Probab=99.97 E-value=4.8e-29 Score=224.40 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=166.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++.+ |++++++.+ ++++++|++++|+||
T Consensus 102 ~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NP 175 (386)
T PRK09082 102 EALFAAILALVRPGDEVIVFDPSYDSYAPAIE-----LAGGRAVRVALQPPDFRVDWQRFAAAI-SPRTRLIILNTPHNP 175 (386)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCcccccCCHHHHHHhc-CccceEEEEeCCCCC
Confidence 57888888889999999999999999988774 257777777653 789999998 778999999999999
Q ss_pred ccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+. ++++|.++|+++|+++|+|++|..+.++. .. .+..++++|+||.||++|+|+ ||+++++++
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~iv~~~~l 254 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKV-GYCVAPAAL 254 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhh-hhhhCCHHH
Confidence 99985 57889999999999999999996554311 11 246799999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++. ...+++...+.++++++.+.+.|++.+..+..|.
T Consensus 255 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~---------------- 317 (386)
T PRK09082 255 SAEFRKVHQ-YNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCE---------------- 317 (386)
T ss_pred HHHHHHHHh-hhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----------------
Confidence 998887654 1123444555555444554 3333555556678999999999998776554333
Q ss_pred CCCcceEEEEEeCC--HHHHHHHHHHh
Q 020548 222 EYGFGGLLCLDMET--EEKANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~--~~~~~~~~~~l 246 (324)
+|.++|+.++. ..+...|.+.+
T Consensus 318 ---g~~~~~~~~~~~~~~~~~~~~~~l 341 (386)
T PRK09082 318 ---GTYFQLVDYSAISDLDDVEFCQWL 341 (386)
T ss_pred ---eeEEEEEeccccCCCCHHHHHHHH
Confidence 57788888862 23455666664
No 72
>PRK08912 hypothetical protein; Provisional
Probab=99.97 E-value=1.9e-28 Score=220.71 Aligned_cols=218 Identities=19% Similarity=0.228 Sum_probs=162.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ +++++++++++|+||
T Consensus 98 ~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NP 171 (387)
T PRK08912 98 EALAAALLALVEPGDEVVLFQPLYDAYLPLIR-----RAGGVPRLVRLEPPHWRLPRAALAAAF-SPRTKAVLLNNPLNP 171 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCcccCcCCHHHHHHHh-CccceEEEEeCCCCC
Confidence 57888888889999999999999999988774 367777666542 689999988 778999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-c---C-CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-A---R-LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~---~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+ +++|.++|+++++++|+||+|..+.+. + . . .+.+++++|+||.||.+|.|+ ||+++++++
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~ 250 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKV-GFVCAAPPL 250 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCcee-EEEecCHHH
Confidence 999986 667899999999999999999654322 1 1 1 246899999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... .....+...+.++...+.. ..++.+..+++.++++.+.+.|++.+..+..|.
T Consensus 251 ~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------- 313 (387)
T PRK08912 251 LRVLAKAHQF-LTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQ---------------- 313 (387)
T ss_pred HHHHHHHHhh-ccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----------------
Confidence 9888766541 1122222233333333322 233555667789999999999999876554333
Q ss_pred CCCcceEEEEEeCC---HHHHHHHHHHh
Q 020548 222 EYGFGGLLCLDMET---EEKANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~---~~~~~~~~~~l 246 (324)
+|.++|+.++. ..+..++.+.+
T Consensus 314 ---g~~~l~~~l~~~~~~~~~~~~~~~l 338 (387)
T PRK08912 314 ---GTYFLTVDLAPLGLAEDDVAFCRRL 338 (387)
T ss_pred ---cceEEEecccccCCCCCHHHHHHHH
Confidence 56788888863 23455666664
No 73
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.97 E-value=1.6e-28 Score=221.91 Aligned_cols=215 Identities=19% Similarity=0.174 Sum_probs=159.2
Q ss_pred chHHHHHHHccCC---CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~---gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..+++++++| ||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .++++++++++
T Consensus 101 ~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~vp~~~~~~~~~d~~~l~~~~-~~~~k~i~l~n 174 (396)
T PRK09147 101 EALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL-----LAGAEPYFLNCDPANNFAPDFDAVPAEV-WARTQLLFVCS 174 (396)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHH-----hcCCEEEEeccCccccCccCHHHHHHHH-hhccEEEEEcC
Confidence 5788899999999 9999999999999988773 367788777652 688998877 66899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c---------CCCCcEEEeCCccccccCCCee
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A---------RLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~---------~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
||||||.+.+ +++|+++|++++++||+||+|..+.++. . ..+..++++|+||.++++|+|+
T Consensus 175 P~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRi 254 (396)
T PRK09147 175 PGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRS 254 (396)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcccee
Confidence 9999999985 6788888999999999999996653211 0 1245699999999999999997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
||+++++++++.+...... ...+.+.+.+.++...+.....+....+.++++++.+.+.|++. ..+..|.
T Consensus 255 -G~~~~~~~l~~~~~~~~~~-~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~------- 324 (396)
T PRK09147 255 -GFVAGDAALLKKFLLYRTY-HGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV-LDVQLPD------- 324 (396)
T ss_pred -eeecCCHHHHHHHHHHhhh-cccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCC-------
Confidence 9999999999988766541 11122233333333333322345556677788999999999875 4433344
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|++++. ....+.+.+
T Consensus 325 ------------~g~f~~~~~~~--~~~~~~~~l 344 (396)
T PRK09147 325 ------------AGFYLWAKVPG--DDTEFARRL 344 (396)
T ss_pred ------------eeEEEEEECCC--CHHHHHHHH
Confidence 68899999871 234455554
No 74
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.97 E-value=2.5e-28 Score=219.63 Aligned_cols=218 Identities=15% Similarity=0.201 Sum_probs=162.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++. .|++++++.+ ++++++|++++|||
T Consensus 100 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~N 173 (384)
T PRK06348 100 HGMYLALQSILDPGDEVIIHEPYFTPYKDQIE-----MVGGKPIILETYEEDGFQINVKKLEALI-TSKTKAIILNSPNN 173 (384)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEEecCCcCcCCcCCHHHHHHhh-CcCccEEEEeCCCC
Confidence 57888999999999999999999999998884 25666666543 2789999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cC--CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P---AR--LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|.++|+++|+++|+||+|..+..+ + .. .+..++++|+||.++++|.|+ ||+++++++
T Consensus 174 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi-G~~v~~~~~ 252 (384)
T PRK06348 174 PTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRI-GYVIAPDYI 252 (384)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccc-eeeecCHHH
Confidence 9999985 678888899999999999999766422 1 11 246799999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
.+.+..... ....+.+.+.+.++..++...+. ++...+.++++++.+.+.|++.+. .+..|.
T Consensus 253 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~--------------- 316 (384)
T PRK06348 253 IETAKIINE-GICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPK--------------- 316 (384)
T ss_pred HHHHHHHHH-hccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC---------------
Confidence 888877654 11233444555555545544332 445556678888999999987633 444333
Q ss_pred cCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|++++. ..+...+.+.+
T Consensus 317 ----gg~~~~~~~~~~~~~~~~l~~~l 339 (384)
T PRK06348 317 ----GSIYAFINIKKTGLSSVEFCEKL 339 (384)
T ss_pred ----eeEEEEEecccCCCCHHHHHHHH
Confidence 56778998862 23345566654
No 75
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.97 E-value=3.6e-28 Score=219.83 Aligned_cols=219 Identities=12% Similarity=0.092 Sum_probs=159.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHH----HHHHhhhc--CCceEE
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHE----MVNSAIVQ--GRTKVL 67 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~----~l~~~l~~--~~~~~v 67 (324)
++|+..+++++++|||.|++++|+|+.+...++ ..|.++..++. .|++ .+++++++ .+++++
T Consensus 105 ~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i 179 (403)
T PRK08636 105 KEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFI-----LAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYV 179 (403)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEE
Confidence 368899999999999999999999999988874 36777777653 1444 45665532 578999
Q ss_pred EEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC----CCcEEEeCCccccccCCCeeEE
Q 020548 68 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL----GADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 68 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~----~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++++||||||.+++ +++|+++|++++++||+||+|..+.++. ... +..++++|+||.|+.+|.|+ |
T Consensus 180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G 258 (403)
T PRK08636 180 VVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRV-G 258 (403)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcccee-e
Confidence 99999999999986 5688889999999999999996654321 111 24467899999999999997 9
Q ss_pred EEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 135 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
|+++++++++.+..... ....+.+++.+..+..++... .++....+.+.++++.+.+.|++.+..+..|.
T Consensus 259 ~iv~~~~li~~~~~~~~-~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~-------- 329 (403)
T PRK08636 259 FVVGNKKLVGALKKIKS-WLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANAGWELQKPR-------- 329 (403)
T ss_pred eeeCCHHHHHHHHHHHH-HhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC--------
Confidence 99999999998877654 111233444454444444322 23445556678899999999998765544444
Q ss_pred HHHHHhccCCCcceEEEEEeCCH---HHHHHHHHH
Q 020548 214 LLKSMANKEYGFGGLLCLDMETE---EKANRLMNY 245 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~ 245 (324)
+|.++|+.+++. .....+.+.
T Consensus 330 -----------~g~~~~~~l~~~~~~~~~~~l~~~ 353 (403)
T PRK08636 330 -----------ASMFVWAKIPEPARHLGSLEFSKQ 353 (403)
T ss_pred -----------cceEEEEECCCccCCCCHHHHHHH
Confidence 688999999742 123455554
No 76
>PRK09148 aminotransferase; Validated
Probab=99.97 E-value=5.1e-28 Score=218.78 Aligned_cols=208 Identities=13% Similarity=0.108 Sum_probs=156.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh--cCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV--QGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~--~~~~~~v~~~~~~np 75 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ .++++++.++ .++++++++++||||
T Consensus 103 ~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NP 177 (405)
T PRK09148 103 EGFANMAQAITAPGDVILCPNPSYPIHAFGFI-----MAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNP 177 (405)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----hcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCC
Confidence 57888999999999999999999999987773 268888777653 3344444442 367899999999999
Q ss_pred cccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC----CCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+. ++|.++|+++|+++|+||+|..+.++ .... +..++++|+||.++.+|+|+ ||+++++++
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~-G~~v~~~~~ 256 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRM-GFAVGNERL 256 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchhe-eeeeCCHHH
Confidence 9999875 67888999999999999999665421 1111 34578999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++... .+++...+.++++++.+.+.|++.+..+..|.
T Consensus 257 i~~l~~~~~-~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~---------------- 319 (405)
T PRK09148 257 IAALTRVKS-YLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPA---------------- 319 (405)
T ss_pred HHHHHHHHH-HhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCC----------------
Confidence 998887654 111333455555555555432 33455566779999999999999876544344
Q ss_pred CCCcceEEEEEeCC
Q 020548 222 EYGFGGLLCLDMET 235 (324)
Q Consensus 222 ~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 320 ---~g~f~~~~l~~ 330 (405)
T PRK09148 320 ---ASMFAWAPIPE 330 (405)
T ss_pred ---eeEEEEEECCC
Confidence 67899999873
No 77
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.3e-28 Score=218.22 Aligned_cols=252 Identities=20% Similarity=0.220 Sum_probs=181.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+++..++++++++||+|++++|+|+.+...+. ..|.++..++.+ |++++++.+ +++++++++++|+||||
T Consensus 92 ~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~i~~p~NPtG 165 (359)
T PRK03158 92 EVIQMISRALLNPGTNTVMAEPTFSQYRHNAI-----IEGAEVREVPLKDGGHDLEAMLKAI-DEQTKIVWICNPNNPTG 165 (359)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEEecCCCCcCHHHHHHhc-CCCCCEEEEeCCCCCCC
Confidence 57788888889999999999999999887763 257777777653 789999888 77899999999999999
Q ss_pred cccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc---c------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP---A------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~---~------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
.+.+.+++.++++. +|+++|+||+|..+.... . ..+.+++++|+||.||++|.|+ ||+++++++++.+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~v~~~~~~~~~ 244 (359)
T PRK03158 166 TYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRV-GYGIASEELIEKL 244 (359)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhh-ehhcCCHHHHHHH
Confidence 99999998888876 599999999996654221 1 1257899999999999899997 9999999999998
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...... ...+.+.+.++..++....+++...+.+.++++.+.+.|++.+..+. |. .|
T Consensus 245 ~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------------------~g 301 (359)
T PRK03158 245 NIARPP---FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEYGLFYY-PS-------------------QT 301 (359)
T ss_pred HHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeC-CC-------------------cC
Confidence 876541 33444555555555544344555555667888889999988865443 43 46
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
.++|+.++. ....+.+.+.. .|+ . +.|+..+ + .++++|+|++ . .+..
T Consensus 302 ~~i~~~~~~--~~~~~~~~l~~---~gv-~----------v~~g~~f------------~-~~~~iRi~~~-~---~~~~ 348 (359)
T PRK03158 302 NFIFVDTGR--DANELFEALLK---KGY-I----------VRSGAAL------------G-FPTGVRITIG-L---KEQN 348 (359)
T ss_pred cEEEEECCC--CHHHHHHHHHH---CCe-E----------EeeCCCC------------C-CCCeEEEecC-C---HHHH
Confidence 788988852 24456666553 232 2 1232211 2 1478999999 3 3334
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+.+
T Consensus 349 ~~l~~al~~~ 358 (359)
T PRK03158 349 DKIIELLKEL 358 (359)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 78
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.97 E-value=5.9e-28 Score=221.18 Aligned_cols=206 Identities=18% Similarity=0.171 Sum_probs=154.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+||..++.++++|||.|++++|+|+.+...+.. ..|.++..++.+ |++++++++++ .+++++++
T Consensus 122 ~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~----~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l 197 (468)
T PLN02450 122 SANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW----RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLI 197 (468)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCchHHHHhh----cCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 578899999999999999999999999876631 257777777642 67888888732 37899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c----c------------CCCCcEEEeCCccccccC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P----A------------RLGADVVVHSISKFISGG 128 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~----~------------~~~~d~~~~S~sK~~~~~ 128 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|+.+.+. + . ..+..++++|+||.|+++
T Consensus 198 ~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~ 277 (468)
T PLN02450 198 TNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLP 277 (468)
T ss_pred ecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCC
Confidence 999999999986 567888899999999999999654321 1 1 124679999999999999
Q ss_pred CCeeEEEEEcChh-HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 129 ADIIAGAVCGPAN-LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 129 g~r~~G~i~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
|+|+ ||++++++ +.+.+..... . ...+.+.+.++..++.... .+...++++.++++.+.+.|++.+..+..
T Consensus 278 GlRi-G~li~~~~~l~~~~~~~~~-~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~ 353 (468)
T PLN02450 278 GFRV-GAIYSNDEMVVSAATKMSS-F--GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLK 353 (468)
T ss_pred CccE-EEEEECCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 9997 99999754 5565555433 1 2234555655555655432 24556677899999999999998765543
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|. +|.++|+.++
T Consensus 354 ~~-------------------~g~flwi~l~ 365 (468)
T PLN02450 354 SN-------------------AGLFCWVDMR 365 (468)
T ss_pred CC-------------------ceEEEEEEch
Confidence 33 6779999986
No 79
>PRK07683 aminotransferase A; Validated
Probab=99.97 E-value=7.8e-28 Score=216.53 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=149.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+.+...+. ..|.++.+++.+ |.+++++.+ +++++++++++|+||
T Consensus 100 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~i~i~~p~NP 173 (387)
T PRK07683 100 EAIDIAFRTILEPGTEVILPAPIYPGYEPIIR-----LCGAKPVFIDTRSTGFRLTAEALENAI-TEKTRCVVLPYPSNP 173 (387)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCccchHHHHH-----HcCCEEEEeecCcccCCCCHHHHHHhc-CcCceEEEEeCCCCC
Confidence 57888888889999999999999999888773 368888887653 568899888 778999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c-cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-AR----LGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+ +++|+++|+++|+++|+||+|..+... + .. .+.+++++|+||.||.||.|+ ||++++++++
T Consensus 174 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRi-G~i~~~~~l~ 252 (387)
T PRK07683 174 TGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRI-GFLFAPSYLA 252 (387)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcccee-EEEEcCHHHH
Confidence 999975 778899999999999999999665322 1 11 146799999999999899997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+.+..... ....+.+.+.+..+..++.. ..+++..++++.++++.+.+.|++.+..+..|.
T Consensus 253 ~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (387)
T PRK07683 253 KHILKVHQ-YNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPT 314 (387)
T ss_pred HHHHHHHH-hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 98886643 11122334444444444433 233445556678899999999988765544343
No 80
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.97 E-value=1.1e-28 Score=219.94 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=178.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
++|..++++++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++ +++++++++++||||||
T Consensus 92 e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~d~~~l~~~~-~~~~~~v~i~~P~NPTG 165 (366)
T PRK01533 92 EVIQIISRAVLKAGDNIVTAGATFPQYRHHAI-----IEGCEVKEVALNNGVYDLDEISSVV-DNDTKIVWICNPNNPTG 165 (366)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-----HcCCEEEEeecCCCCcCHHHHHHHh-CcCCcEEEEeCCCCCCC
Confidence 57888899999999999999999999998874 368888887663 799999988 77899999999999999
Q ss_pred cccChHHHHHHH---HhcCCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 78 AVANIPELSRLA---HDKGVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 78 ~~~~~~~i~~l~---~~~~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
.+.+.+++.+++ ++++ ++|+||+|..+... .. ..+..++++|+||.||++|+|+ ||+++++++++.
T Consensus 166 ~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi-G~~i~~~~~~~~ 243 (366)
T PRK01533 166 TYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRV-GYAVGHEELIEK 243 (366)
T ss_pred CCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHH-hHHhCCHHHHHH
Confidence 998866555554 4544 77889999655321 11 1257899999999999999997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+...... .+.+.+.+.++..++....+.....+...++++++.+.++..+.++. |. .
T Consensus 244 l~~~~~~---~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~-~~-------------------~ 300 (366)
T PRK01533 244 LNVVRLP---FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENEIPFY-QS-------------------Q 300 (366)
T ss_pred HHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccC-CC-------------------c
Confidence 9876541 33444555555555554344445555667788888888888776544 32 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++|+.+++ ...+.+++.. .|+ . . .+ . ++++|+|+|..++.+.+
T Consensus 301 ~nf~~~~~~~---~~~~~~~l~~---~GI-~--V--------r~-----------------~-~~~iRis~~~~~~~~~l 345 (366)
T PRK01533 301 TNFIFLPVEN---GGEIYEACAH---AGF-I--I--------RP-----------------F-PNGVRITVGTREQNEGV 345 (366)
T ss_pred CcEEEEeCCC---HHHHHHHHHH---CCc-E--E--------cc-----------------C-CCceEEeCCCHHHHHHH
Confidence 7799999863 3456666663 333 1 1 11 0 36799999932344445
Q ss_pred HHHHHHHHHhh
Q 020548 306 WSQFEKALSRM 316 (324)
Q Consensus 306 ~~~l~~~l~~~ 316 (324)
++.|++.++..
T Consensus 346 ~~al~~~~~~~ 356 (366)
T PRK01533 346 ISVLQQHFENK 356 (366)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 81
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.96 E-value=2.3e-28 Score=215.45 Aligned_cols=249 Identities=10% Similarity=0.130 Sum_probs=167.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
++|..++. ++++| .|++.+|+|+.+...++ ..|.++..++.++.+...+.++..++++|++++||||||.+.+
T Consensus 68 ~~l~~~~~-~~~~~-~vv~~~P~y~~y~~~~~-----~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s 140 (332)
T PRK06425 68 HFIYRLLS-YINVG-NIIIVEPNFNEYKGYAF-----THGIRISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNLIS 140 (332)
T ss_pred HHHHHHHH-HhCCC-cEEEeCCChHHHHHHHH-----HcCCeEEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccC
Confidence 46777776 46776 46677999999999884 3788888887642111123332358899999999999999986
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLSP----A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+++|+++|+++|+++|+||+|..+..+. . ..+..++++||||.|+++|+|+ ||+++++++++.+....
T Consensus 141 ~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi-Gy~v~~~~li~~l~~~~ 219 (332)
T PRK06425 141 RDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRI-GYIATDDYNMKISRKIT 219 (332)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhh-eeeecCHHHHHHHHHcC
Confidence 5677778899999999999997765321 1 1256899999999999899997 99999999999888754
Q ss_pred hhhhhccCCCCCHHHHHHHhc-Cccc-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 151 QGALMLLGPTMNPKVAFELSE-RIPH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
. .+ ..+......+.. .... ++...+.+.++++.+.+.|++.+..+..|. .|++
T Consensus 220 ~----~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~-------------------~g~f 274 (332)
T PRK06425 220 E----PW--SVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDP-------------------SANF 274 (332)
T ss_pred C----CC--ccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC-------------------CceE
Confidence 4 11 222222222211 1122 234566678999999999999876544333 4778
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+|+.+++ ..++.+.+.. .|+ .+.|+..+. +..++++|+|+| .. +..+.
T Consensus 275 ~~~~~~~---~~~~~~~l~~---~gi-----------~v~~~~~f~-----------~~~~~~iRis~~-~~---~~~~~ 322 (332)
T PRK06425 275 ITFMIPD---AHDFYSYLLK---NGI-----------LVRLLDDYE-----------CLGEQYIRIAIR-RR---SFNIK 322 (332)
T ss_pred EEEEcCC---HHHHHHHHHH---CCe-----------EEEECCCCC-----------CCCCCEEEEEeC-CH---HHHHH
Confidence 9999862 4556666653 232 122322210 112479999999 32 33456
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
|.++|+.
T Consensus 323 l~~al~~ 329 (332)
T PRK06425 323 LVNALRN 329 (332)
T ss_pred HHHHHHH
Confidence 6666554
No 82
>PRK07777 aminotransferase; Validated
Probab=99.96 E-value=8e-28 Score=216.72 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=163.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+.+...++ ..|.++..++. .|++++++.+ ++++++|++++|+
T Consensus 96 ~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~ 169 (387)
T PRK07777 96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIA-----MAGAHRVPVPLVPDGRGFALDLDALRAAV-TPRTRALIVNSPH 169 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HCCCEEEEeecCCccCCCcCCHHHHHHhc-CcccEEEEEcCCC
Confidence 57888888889999999999999999887774 25666555543 3789999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC-----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
||||.+.+ +++|+++|+++++++|+||+|.++.+. +.. .+.++++.|+||.||.+|.|+ ||+++++
T Consensus 170 NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~ 248 (387)
T PRK07777 170 NPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKI-GWACGPA 248 (387)
T ss_pred CCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCcee-EEEecCH
Confidence 99999975 778899999999999999999655421 111 247899999999999899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++++.+..... ......+.+.+..+..++.. ..++....+.+.++++.+.+.|++.+.++..|.
T Consensus 249 ~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------- 313 (387)
T PRK07777 249 PLIAAVRAAKQ-YLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSA-------------- 313 (387)
T ss_pred HHHHHHHHHHh-hcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCC--------------
Confidence 99988876654 11233444555444444433 233455566779999999999999876554333
Q ss_pred ccCCCcceEEEEEeCC--HHHHHHHHHHhh
Q 020548 220 NKEYGFGGLLCLDMET--EEKANRLMNYLQ 247 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~--~~~~~~~~~~l~ 247 (324)
+|.++|+.++. ..+...|.+.+.
T Consensus 314 -----g~~~~~~~~~~~~~~~~~~~~~~l~ 338 (387)
T PRK07777 314 -----GTYFLCADPRPLGYDDGTEFCRALP 338 (387)
T ss_pred -----cceEEEecccccCCCCHHHHHHHHH
Confidence 56778888752 224567777764
No 83
>PLN02187 rooty/superroot1
Probab=99.96 E-value=5.3e-28 Score=221.13 Aligned_cols=207 Identities=16% Similarity=0.158 Sum_probs=151.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++++++|||+|++++|+|+.+...+. ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 142 ~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~l~~~~~~~~d~~~l~~~~-~~~~~~v~i~nP~N 215 (462)
T PLN02187 142 QGIEIVFESLARPNANILLPRPGFPHYDARAA-----YSGLEVRKFDLLPEKEWEIDLEGIEAIA-DENTVAMVVINPNN 215 (462)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEeCccccCCccCHHHHHHhc-CCCcEEEEEeCCCC
Confidence 68899999999999999999999999887663 26777777654 1789999988 78899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c---c-CC---CCcEEEeCCccccccCCCeeEEEEEcC-hh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P---A-RL---GADVVVHSISKFISGGADIIAGAVCGP-AN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~---~-~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.+. + . .+ ...++++|+||.|+.+|+|+ ||++++ ++
T Consensus 216 PTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRi-G~~v~~~p~ 294 (462)
T PLN02187 216 PCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKI-GWIALNDPE 294 (462)
T ss_pred CCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCcccee-EEEEecCch
Confidence 9999986 778888999999999999999775432 1 1 11 24799999999999999997 999873 32
Q ss_pred -H---HHHHHHhhhhhhhc-cCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCce--eCCCCCCCchh
Q 020548 142 -L---VNSMMDLHQGALML-LGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV--LYPGLEDHPHH 212 (324)
Q Consensus 142 -~---~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~p~~~~~~~~ 212 (324)
+ .+.+.......... +.+.+.+.++..++.. ..++....+.+.++++.+.+.|++.+... ..|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~------- 367 (462)
T PLN02187 295 GVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPE------- 367 (462)
T ss_pred hHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCC-------
Confidence 2 34554444311111 1134445454445432 23455666778999999999999875421 2243
Q ss_pred HHHHHHhccCCCcceEEEEEeC
Q 020548 213 ELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 368 ------------gg~fl~~~l~ 377 (462)
T PLN02187 368 ------------SCTYLLTKLE 377 (462)
T ss_pred ------------EeEEEEeecC
Confidence 5788888775
No 84
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.96 E-value=1.1e-27 Score=220.08 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=149.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh-----cCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV-----QGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~-----~~~~~~v~~ 69 (324)
+|+..+++++++|||.|++++|+|+.+...+.. ..|.++..++.+ |+++++++++ ..++|+|++
T Consensus 130 ~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~----~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l 205 (496)
T PLN02376 130 GANETIMFCLADPGDVFLIPSPYYAAFDRDLRW----RTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLIL 205 (496)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCccchHHHHHh----hCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 578999999999999999999999999876631 157888777652 6788876542 247899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC-----------CCcEEEeCCccccccCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL-----------GADVVVHSISKFISGGA 129 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~-----------~~d~~~~S~sK~~~~~g 129 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|..+.++. ... +..+++.|+||.||.||
T Consensus 206 ~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG 285 (496)
T PLN02376 206 TNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG 285 (496)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc
Confidence 999999999986 5678889999999999999996653211 001 12356899999999999
Q ss_pred CeeEEEEEcC-hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH----HHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 130 DIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG----LRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 130 ~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
.|+ ||++++ +.+.+.++..... ...+++.+.++..++....+++ ...+++.++++.+.+.|++.+..+..|
T Consensus 286 lRv-G~li~~~~~l~~~~~~~~~~---~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~ 361 (496)
T PLN02376 286 FRV-GIVYSFNDSVVSCARKMSSF---GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTS 361 (496)
T ss_pred ceE-EEEEECCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 997 999985 4555555444331 2234455555555555433323 335567888899999999887665434
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
. +|.++|++++
T Consensus 362 ~-------------------aG~flwi~l~ 372 (496)
T PLN02376 362 N-------------------AGLFAWMDLR 372 (496)
T ss_pred C-------------------ceEEEEEEch
Confidence 3 6899999996
No 85
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.96 E-value=1.3e-27 Score=215.42 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=161.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc--CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ--GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~--~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|++++|+|.++...++ ..|.++..++.+ |++++++++.. ++++++++++|+
T Consensus 102 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~ 176 (391)
T PRK07309 102 EALSASLTAILEPGDKVLLPAPAYPGYEPIVN-----LVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPA 176 (391)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCC
Confidence 57888888899999999999999999988774 367777777542 68999988832 368999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-c--CCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-A--RLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+.++ + . ..+..++++|+||.|+.+|.|+ ||+++++++
T Consensus 177 NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRv-G~~v~~~~~ 255 (391)
T PRK07309 177 NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRI-GLIFAPAEF 255 (391)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCcccee-EEEEeCHHH
Confidence 99999975 788899999999999999999766431 1 1 1246699999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++.... +.....+++.++++.+.+.|++.+..+..|.
T Consensus 256 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~---------------- 318 (391)
T PRK07309 256 TAQLIKSHQ-YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPD---------------- 318 (391)
T ss_pred HHHHHHHHh-hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC----------------
Confidence 998886644 2123334444555544554322 2334445678889999999998876655444
Q ss_pred CCCcceEEEEEeCCH--HHHHHHHHH
Q 020548 222 EYGFGGLLCLDMETE--EKANRLMNY 245 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~--~~~~~~~~~ 245 (324)
+|.++|++++.. .+...+.+.
T Consensus 319 ---gg~~~~~~l~~~~~~~~~~~~~~ 341 (391)
T PRK07309 319 ---GAFYIFAKIPAGYNQDSFKFLQD 341 (391)
T ss_pred ---eeEEEEEECCCCCCCCHHHHHHH
Confidence 566778888632 123445544
No 86
>PRK07337 aminotransferase; Validated
Probab=99.96 E-value=1.1e-27 Score=215.86 Aligned_cols=217 Identities=20% Similarity=0.241 Sum_probs=161.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...+. ..|.++..++.+ |++++++.+ ++++++|++++|+|
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~N 174 (388)
T PRK07337 101 AALLLACLALVERGDEVLMPDPSYPCNRHFVA-----AAEGRPVLVPSGPAERFQLTAADVEAAW-GERTRGVLLASPSN 174 (388)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEeecCCccCCcCCHHHHHhhc-CccceEEEEECCCC
Confidence 57888888899999999999999999987774 256666666542 689999988 78899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++++++|+||+|..+.+.. ... +..++++|+||.++++|.|+ ||+++++++++.
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~Ri-G~~~~~~~l~~~ 253 (388)
T PRK07337 175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRL-GWLVVPEALVGT 253 (388)
T ss_pred CCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhhe-eeeecCHHHHHH
Confidence 9999975 6788899999999999999996654321 122 23477899999999999997 999999999988
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+...... ...+.+.+.+.++..++.. ...+.+..+.+.++++.+.+.|++.+..+ ..|.
T Consensus 254 l~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~----------------- 315 (388)
T PRK07337 254 FEKLAQN-LFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPD----------------- 315 (388)
T ss_pred HHHHHHH-hccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-----------------
Confidence 8776541 1123344455444444432 23344555667889999999999976543 2344
Q ss_pred CCcceEEEEEeCCH-----HHHHHHHHH
Q 020548 223 YGFGGLLCLDMETE-----EKANRLMNY 245 (324)
Q Consensus 223 ~~~g~~~~~~l~~~-----~~~~~~~~~ 245 (324)
+|.++|++++.. .+...|.+.
T Consensus 316 --~g~f~~~~~~~~~~~~~~~~~~~~~~ 341 (388)
T PRK07337 316 --GAFYVYADCRGVAHPAAGDSAALTQA 341 (388)
T ss_pred --eeEEEEEecccccCCCCCCHHHHHHH
Confidence 688999998631 234556555
No 87
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.96 E-value=6.5e-28 Score=217.63 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=160.0
Q ss_pred CchHHHHHHHccCCCCE--EEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEec
Q 020548 1 MSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~--vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++|+..+++++++|||+ |++++|+|+.+...++ ..|.++..++.+ |++++++++ .++++++++++
T Consensus 100 ~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~ 173 (393)
T TIGR03538 100 REALFAFAQAVINPGQAPLVVMPNPFYQIYEGAAL-----LAGAEPYFLNCTAENGFLPDFDAVPESV-WRRCQLLFVCS 173 (393)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHH-----hcCCeEEEeeccccCCCCCCHHHHHHHH-hhcceEEEEeC
Confidence 36888899999999986 9999999999987763 367777777642 688898888 66899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----cc------------CCCCcEEEeCCccccccCCCee
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----PA------------RLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~~------------~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
||||||.+.+ +++|+++|+++|++||+||+|..+..+ +. ..+..++++|+||.++++|+|+
T Consensus 174 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRv 253 (393)
T TIGR03538 174 PGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRS 253 (393)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccce
Confidence 9999999986 678888999999999999999655422 10 1235699999999999999997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
||+++++++++.+..... ....+.+.+.+..+...+.....+....+.++++++.+.+.|++. ..+..|.
T Consensus 254 -G~~i~~~~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~------- 323 (393)
T TIGR03538 254 -GFVAGDAEILKAFLRYRT-YHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV-LDLELPD------- 323 (393)
T ss_pred -EEEecCHHHHHHHHHHHH-hhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCCC-------
Confidence 999999999988877654 111223334444433333322335555667788899999999875 3333344
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|++++ .....+.+.+
T Consensus 324 ------------gg~f~~~~~~--~~~~~~~~~l 343 (393)
T TIGR03538 324 ------------AGFYLWPKVP--GDDEAFARAL 343 (393)
T ss_pred ------------eeEEEEEECC--CCHHHHHHHH
Confidence 6889999997 1234566554
No 88
>PRK08175 aminotransferase; Validated
Probab=99.96 E-value=1.2e-27 Score=215.92 Aligned_cols=219 Identities=16% Similarity=0.115 Sum_probs=162.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc--CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ--GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~--~~~~~v~~~~~~np 75 (324)
+|+..++..+++|||+|++++|+|+.+...++ ..|.++..++.+ +.++++++++. ++++++++++|+||
T Consensus 102 ~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NP 176 (395)
T PRK08175 102 EGLAHLMLATLDHGDTVLVPNPSYPIHIYGAV-----IAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNP 176 (395)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 57788888889999999999999999877763 267777777653 47888887732 47899999999999
Q ss_pred cccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+. ++|+++|+++|+++|+||+|..+.++. .. .+..++++|+||.||.||.|+ ||+++++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRi-G~~~~~~~l 255 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRI-GFMVGNPEL 255 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhh-eeeeCCHHH
Confidence 9999876 788999999999999999996554221 11 134578899999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... ...+.+++.+.++..++... .++....+++.++++.+.+.|++.+..+..|.
T Consensus 256 ~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~---------------- 318 (395)
T PRK08175 256 VSALARIKSY-HDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPK---------------- 318 (395)
T ss_pred HHHHHHHHhh-cccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC----------------
Confidence 9988876541 11223344444444444332 23445566678899999999999876544444
Q ss_pred CCCcceEEEEEeCCHH---HHHHHHHHh
Q 020548 222 EYGFGGLLCLDMETEE---KANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~---~~~~~~~~l 246 (324)
+|.++|++++... ...++..++
T Consensus 319 ---~g~~i~i~l~~~~~~~~~~~~~~~l 343 (395)
T PRK08175 319 ---ASMYVWAKIPEPYAAMGSLEFAKKL 343 (395)
T ss_pred ---EEEEEEEECCcccCCCCHHHHHHHH
Confidence 6889999997422 245566554
No 89
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.96 E-value=6.1e-28 Score=217.70 Aligned_cols=218 Identities=16% Similarity=0.205 Sum_probs=162.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++. .|++++++.+ +++++++++++|+|
T Consensus 104 ~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~i-~~~~~~v~i~~p~N 177 (391)
T PRK08361 104 EATYLAFESLLEEGDEVIIPDPAFVCYVEDAK-----IAEAKPIRIPLREENEFQPDPDELLELI-TKRTRMIVINYPNN 177 (391)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----HcCCEEEEEecCCccCCCCCHHHHHHhc-ccccEEEEEeCCCC
Confidence 57888888899999999999999999887773 26777777654 3789999998 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A--RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
|||.+.+ +++|+++|+++++++|+||+|..+..+. . ..+.+++++|+||.||.+|.|+ ||++++++++
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRi-G~~~~~~~~~ 256 (391)
T PRK08361 178 PTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRL-GFVIAPEQVI 256 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhh-hhhccCHHHH
Confidence 9999998 7889999999999999999996653211 1 1257899999999999899997 9999999998
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHh
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+.+..... ......+.+.+..+..++.... .+....+++.++++.+.+.|++. +..+..|.
T Consensus 257 ~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~-------------- 321 (391)
T PRK08361 257 KDMIKLHA-YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPK-------------- 321 (391)
T ss_pred HHHHHHHh-hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC--------------
Confidence 88876544 1112233334444444444322 24556666788899999999987 33444343
Q ss_pred ccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 220 NKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|++++. ..+..++.+.+
T Consensus 322 -----g~~~~~~~l~~~~~~~~~l~~~l 344 (391)
T PRK08361 322 -----GAFYVFANIDETGMSSEDFAEWL 344 (391)
T ss_pred -----EEEEEEEECCCCCCCHHHHHHHH
Confidence 56678888863 22345566654
No 90
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=6.3e-28 Score=215.66 Aligned_cols=218 Identities=12% Similarity=0.105 Sum_probs=160.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
++|..++.+++++||.|++++|+|+.+...+. ..|.++..++.+ |++++++.+.+++++++++++|+||||
T Consensus 95 ~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG 169 (369)
T PRK08153 95 GLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVA-----GFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMG 169 (369)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcchHHHHHHH-----HcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCC
Confidence 56778888889999999999999999887663 256676666542 788887776457899999999999999
Q ss_pred cccChHHHHHHHHhc--CCEEEEcCCCCcCCCCc----c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 78 AVANIPELSRLAHDK--GVTVVVDNTFSPLVLSP----A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~~----~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
.+.+.+++.++++.. ++++|+||+|..+.... . ..+..++++||||.+|++|+|+ ||+++++++++.+...
T Consensus 170 ~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~v~~~~~~~~l~~~ 248 (369)
T PRK08153 170 SWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARV-GYAIGAPGTIKAFDKV 248 (369)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchhe-eeeecCHHHHHHHHHh
Confidence 999887777776543 89999999996654321 1 1245699999999999899997 9999999999988876
Q ss_pred hhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 150 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
... .+.+.+.+..+..++....++....+.+.++++.+.+.|++.+..+. |. .++++
T Consensus 249 ~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~-------------------~~~f~ 305 (369)
T PRK08153 249 RNH---FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGLTPL-PS-------------------ATNFV 305 (369)
T ss_pred hcC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CC-------------------cCcEE
Confidence 541 33344444444445543334555556678889999999988775432 44 57788
Q ss_pred EEEeC-CHHHHHHHHHHhhc
Q 020548 230 CLDME-TEEKANRLMNYLQN 248 (324)
Q Consensus 230 ~~~l~-~~~~~~~~~~~l~~ 248 (324)
++.++ +......+.+.+..
T Consensus 306 ~~~~~~~~~~a~~l~~~l~~ 325 (369)
T PRK08153 306 AIDCGRDGAFARAVLDGLIA 325 (369)
T ss_pred EEECCCCcccHHHHHHHHHH
Confidence 88875 33446677777664
No 91
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=4.4e-28 Score=217.20 Aligned_cols=218 Identities=20% Similarity=0.227 Sum_probs=158.2
Q ss_pred chHHHHHHHccCCCC-EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc---CCceEEEEec
Q 020548 2 SAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ---GRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd-~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~---~~~~~v~~~~ 71 (324)
+||..++.+++.+|| +|++++|+|+.+...++ ..|.++..++.+ |++++++++.. +++++|++++
T Consensus 102 ~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~ 176 (374)
T PRK02610 102 ELIRSLLIATCLGGEGSILVAEPTFSMYGILAQ-----TLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH 176 (374)
T ss_pred HHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeC
Confidence 567777777777886 89999999999998884 367787777642 78999988833 5899999999
Q ss_pred CCCCcccccChHHHHHHHHh-cCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 72 ISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~-~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||||||.+.+.+++.++++- +++++|+||+|..|...+ ......++++|+||.||++|+|+ ||+++++++++.
T Consensus 177 P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRi-G~~v~~~~l~~~ 255 (374)
T PRK02610 177 PNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRV-GYAIGHPELIAV 255 (374)
T ss_pred CCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccce-eeeecCHHHHHH
Confidence 99999999987766665432 489999999997664221 11235688999999999999997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+...... ...+.+.+.++..++...+.....+++..++++.+.+.|++++. .+ .|.
T Consensus 256 l~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~------------------- 312 (374)
T PRK02610 256 LEKVRLP---YNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRV-WPS------------------- 312 (374)
T ss_pred HHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEe-CCC-------------------
Confidence 8876541 23344555555545544334444555555567888888887633 32 344
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|+++|++++...+...+++.+..
T Consensus 313 ~g~f~~~~l~~~~~~~~~~~~l~~ 336 (374)
T PRK02610 313 AANFLYLRLSQDAALAALHQALKA 336 (374)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 578999999743345667777653
No 92
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.96 E-value=5.5e-28 Score=216.39 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=182.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+++..++.+++++||+|++++|+|..+...+. ..|.++..++.+ |++++++.+ ++++++|++++|+||||
T Consensus 95 ~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG 168 (367)
T PRK02731 95 EILELLARAYLGPGDEVIYSEHGFAVYPIAAQ-----AVGAKPVEVPAKDYGHDLDAMLAAV-TPRTRLVFIANPNNPTG 168 (367)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCHHHHHHHHH-----HcCCeEEEecccCCCCCHHHHHHHh-CCCCcEEEEeCCCCCCC
Confidence 46777888889999999999999988876653 268888777653 789999999 77899999999999999
Q ss_pred cccChHHHHHHHHhc--CCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVANIPELSRLAHDK--GVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
.+.+.+++.++++.+ |+++|+||+|..+... +. .....++++|+||.||.+|.|+ ||+++++++.+.+
T Consensus 169 ~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~~~~~~~~l 247 (367)
T PRK02731 169 TYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRV-GYGIAPPEIIDAL 247 (367)
T ss_pred cCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccce-eeeeCCHHHHHHH
Confidence 999999999998874 8999999998544321 11 1146789999999999899997 9999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...... +..+.+.+..+..++....+++...+.+.++++.+.+.|++.+..+. |. .|
T Consensus 248 ~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~g 304 (367)
T PRK02731 248 NRVRQP---FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGLEYI-PS-------------------VG 304 (367)
T ss_pred HHccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CC-------------------Cc
Confidence 876541 33344444444444443333455555668888999999998876543 33 47
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
+++|+.+++..+..++.+.+.. .|+ .+ .+... .+ .++++|+|++ . .+.+
T Consensus 305 ~~~~i~~~~~~~~~~~~~~L~~---~gI-~v----------~~~~~------------~~-~~~~iRis~~-~---~~e~ 353 (367)
T PRK02731 305 NFILVDFDDGKDAAEAYQALLK---RGV-IV----------RPVAG------------YG-LPNALRITIG-T---EEEN 353 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHH---CCE-EE----------EeCCC------------CC-CCCeEEEecC-C---HHHH
Confidence 8999999644456677777663 343 11 11111 11 1478999999 3 3445
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+.+
T Consensus 354 ~~l~~aL~~~ 363 (367)
T PRK02731 354 RRFLAALKEF 363 (367)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 93
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=216.75 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=150.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+.+...+. ..|.++..++. .|++++++++ +++++++++++|||
T Consensus 108 ~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~~~~~nP~N 181 (409)
T PLN00143 108 HAAEIIIKVLARPEANILLPRPGFPDVETYAI-----FHHLEIRHFDLLPEKGWEVDLDAVEAIA-DENTIAMVIINPGN 181 (409)
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHH-----HcCCEEEEEeccCCCCCcCCHHHHHHhc-ccCCEEEEEECCCC
Confidence 57889999999999999999999999987773 36777777653 1789999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC-C---CCcEEEeCCccccccCCCeeEEEEEc--Ch
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-L---GADVVVHSISKFISGGADIIAGAVCG--PA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~-~---~~d~~~~S~sK~~~~~g~r~~G~i~~--~~ 140 (324)
|||.+.+ +++|+++|+++++++|+||+|..+.++ +.. . ...++++|+||.|+++|+|+ ||+++ ++
T Consensus 182 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRv-G~~v~~~p~ 260 (409)
T PLN00143 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGL-GWLVTCDPS 260 (409)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccce-EEEEeeCch
Confidence 9999986 668888899999999999999766432 111 1 35699999999999999997 99987 33
Q ss_pred hHH------HHHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCce--eCCCCCCCc
Q 020548 141 NLV------NSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV--LYPGLEDHP 210 (324)
Q Consensus 141 ~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~p~~~~~~ 210 (324)
.+. +.+..... . ....+.+.+.++..++.. ..+++..++++.++++.+.+.|++.+... ..|.
T Consensus 261 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~----- 333 (409)
T PLN00143 261 GLLQICEIADSIKKALN-P-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAE----- 333 (409)
T ss_pred hhhhhHHHHHHHHHHHh-c-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-----
Confidence 333 22332222 0 122344555555445542 23466677778888888999998865421 1232
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 334 --------------gg~f~w~~l~ 343 (409)
T PLN00143 334 --------------GAFFALVKLN 343 (409)
T ss_pred --------------eeEEEEEecc
Confidence 6889999986
No 94
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1.5e-27 Score=212.76 Aligned_cols=255 Identities=20% Similarity=0.256 Sum_probs=178.3
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++|..++++++.+| |+|++++|+|..+...++ ..|.++..++.. |++++++.+.++++++|++++|
T Consensus 87 ~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p 161 (364)
T PRK04781 87 EAIDLLVRALCVPGRDAVLVTPPVFGMYAVCAR-----LQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSP 161 (364)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCC
Confidence 57888888889999 799999999998877663 267777777641 5677765543678999999999
Q ss_pred CCCcccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 73 SNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+||||.+.+.+++.++++. +++++|+||+|..|...+ ...++.++++||||.||.+|+|+ ||+++++++++
T Consensus 162 ~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRv-Gy~v~~~~l~~ 240 (364)
T PRK04781 162 SNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARI-GSLIANAELIA 240 (364)
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhccccccee-eeeeCCHHHHH
Confidence 9999999998877777764 478999999997665322 12257899999999999899997 99999999999
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhcc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.+...... ...+++.+..+..++... ......++++.++++.+.+.|++.+ .....|.
T Consensus 241 ~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~---------------- 301 (364)
T PRK04781 241 VLRRCQAP---YPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPS---------------- 301 (364)
T ss_pred HHHhccCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC----------------
Confidence 99877652 233334444444344332 2344556667889999999999874 3323455
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
.|+++|+++++ ...+.+.+.. .|+ . +.++..+ .+. ++++|+|+| .
T Consensus 302 ---~g~f~~~~~~~---~~~~~~~l~~---~gI-~----------v~~~~~~-----------~~~-~~~~Ris~~-~-- 346 (364)
T PRK04781 302 ---QGNFLLVRFDD---AEAAFQALLA---AGV-V----------VRDQRAA-----------PRL-SDALRITLG-T-- 346 (364)
T ss_pred ---CCcEEEEEcCC---HHHHHHHHHH---CCe-E----------EeeCCCC-----------CCC-CCeEEEeCC-C--
Confidence 58899999974 3345555553 332 1 1222111 012 478999999 4
Q ss_pred HHHHHHHHHHHHHhhh
Q 020548 302 LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~~ 317 (324)
.+..+.|.++|+.+.
T Consensus 347 -~~~~~~l~~al~~~~ 361 (364)
T PRK04781 347 -PEQNDRVLAALQRTQ 361 (364)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 333456666666553
No 95
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.96 E-value=3.1e-27 Score=214.85 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=153.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|+..++.++++|||.|+++.|.|+++...+.. + .|+++++++.+ |++++++++.. .++|++++
T Consensus 131 ~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~---~-~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll 206 (447)
T PLN02607 131 AANELLTFILADPGDALLVPTPYYPGFDRDLRW---R-TGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLI 206 (447)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh---c-CCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEE
Confidence 578888888999999999999999999876631 2 57777776542 78899888832 47899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c----c---------C-CCCcEEEeCCccccccCCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P----A---------R-LGADVVVHSISKFISGGAD 130 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~----~---------~-~~~d~~~~S~sK~~~~~g~ 130 (324)
++||||||.+.+ +++|.++|+++|+.+|+||+|..+.++ + . + .+..+++.|+||.||.+|.
T Consensus 207 ~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~Gl 286 (447)
T PLN02607 207 TNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGF 286 (447)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcc
Confidence 999999999986 678889999999999999999653221 1 0 1 1356899999999999999
Q ss_pred eeEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 131 IIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 131 r~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
|+ ||+++ ++++.+.++..... ...+++.+..+..++..... +....+++.++++.+.+.|++.+..+..|.
T Consensus 287 Rv-G~ivs~n~~l~~~~~~~~~~---~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ 362 (447)
T PLN02607 287 RV-GTIYSYNDKVVTTARRMSSF---TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGN 362 (447)
T ss_pred eE-EEEEEcCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 97 99987 66777777655431 12344555555555554333 334456678889999999999876544333
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 363 -------------------ag~fvw~~L~ 372 (447)
T PLN02607 363 -------------------AGLFCWMNLS 372 (447)
T ss_pred -------------------eeEEEEEEch
Confidence 7889999986
No 96
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.96 E-value=2.2e-27 Score=215.68 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=151.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++++|||+|++++|+|+.+..... ..|.++..++. .|++++++.+ +++++++++++|+|
T Consensus 128 ~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~P~N 201 (430)
T PLN00145 128 QAIEIIMSVLAQPGANILLPRPGYPLYEARAV-----FSGLEVRHFDLLPERGWEVDLEGVEALA-DENTVAMVIINPNN 201 (430)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeeCCcccCCcCCHHHHHHHh-CcCceEEEEeCCCC
Confidence 68899999999999999999999999876652 35777777653 2889999988 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEEc--Ch
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVCG--PA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~--~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++ +. .....++++|+||.|++||+|+ ||++. ++
T Consensus 202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~Rl-G~iv~~~~~ 280 (430)
T PLN00145 202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRL-GWIATCDPN 280 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeE-EEEEEecch
Confidence 9999987 778888999999999999999665432 11 1136799999999999999998 99986 44
Q ss_pred hHHHH------HHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-Cce-eCCCCCCCc
Q 020548 141 NLVNS------MMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKV-LYPGLEDHP 210 (324)
Q Consensus 141 ~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~p~~~~~~ 210 (324)
.+++. +..... .....+++.|.++..++.. ...++..+++++++++.+.+.|++.+ ..+ ..|.
T Consensus 281 ~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~----- 353 (430)
T PLN00145 281 GILKETKVVDSIRNYLN--ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPE----- 353 (430)
T ss_pred hhhhhhHHHHHHHHHhc--ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCC-----
Confidence 44432 222221 0011233444444444443 13356667778899999999998863 333 2354
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 354 --------------ga~y~~v~l~ 363 (430)
T PLN00145 354 --------------GSMFVMVKLD 363 (430)
T ss_pred --------------eeeEEEeccC
Confidence 6888899886
No 97
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1.8e-27 Score=211.53 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=160.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+||..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++...++++|++++|+|||
T Consensus 87 ~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPt 161 (351)
T PRK14807 87 EIIHLIMLAFINKGDVVIYPHPSFAMYSVYSK-----IAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPT 161 (351)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 57888888899999999999999998877663 267777776543 78999999843589999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.+++++++.++|+||+|..+.... . ..+..++++|+||.|+.+|+|+ ||+++++++++.+.....
T Consensus 162 G~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRi-G~~v~~~~~~~~~~~~~~ 240 (351)
T PRK14807 162 GSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRV-GYAVANENILKYLNLVKS 240 (351)
T ss_pred CCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhce-eeeecCHHHHHHHHHccC
Confidence 999999999999999888999999996553211 1 2357899999999999899997 999999999998876654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
. ...+.+.+..+..++.. ..+++..+.+.++++.+.+.|++. +..+ .|. .|+++|
T Consensus 241 ~---~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~~g~~~-~~~-------------------~~~~~~ 296 (351)
T PRK14807 241 P---YNINSLSQVIALKVLRT-GVLKERVNYILNERERLIKELSKIPGIKV-YPS-------------------KTNFIL 296 (351)
T ss_pred C---CCcCHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CcC-------------------CccEEE
Confidence 1 22334444444444432 345566667788888899999875 3343 233 467889
Q ss_pred EEeCCHHHHHHHHHHhh
Q 020548 231 LDMETEEKANRLMNYLQ 247 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~ 247 (324)
+.+++ ...+.+.+.
T Consensus 297 i~~~~---~~~~~~~l~ 310 (351)
T PRK14807 297 VKFKD---ADYVYQGLL 310 (351)
T ss_pred EEcCC---HHHHHHHHH
Confidence 99874 344555554
No 98
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.96 E-value=1e-27 Score=217.36 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=159.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ ++++++|++++|||
T Consensus 115 ~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~p~N 188 (412)
T PTZ00433 115 HAILMALTALCDEGDNILVPAPGFPHYETVCK-----AYGIEMRFYNCRPEKDWEADLDEIRRLV-DDRTKALIMTNPSN 188 (412)
T ss_pred HHHHHHHHHhcCCCCEEEEccCCcccHHHHHH-----HcCCEEEEEecCccccCcCCHHHHHHHh-ccCceEEEEeCCCC
Confidence 57888999999999999999999999988874 367777776542 689999888 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEc--C-
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCG--P- 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~--~- 139 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ... ...++++|+||.|+++|.|+ ||++. +
T Consensus 189 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRl-G~~i~~~p~ 267 (412)
T PTZ00433 189 PCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRL-GWLLLVDPH 267 (412)
T ss_pred CCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeE-EEEEEeCCc
Confidence 9999875 6778999999999999999997664321 111 23588999999999999997 99986 2
Q ss_pred ---hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-c-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhH
Q 020548 140 ---ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-I-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~ 213 (324)
+++++.+...... ..+.+.+.+.++..++.. . .+++...+++.++++.+.+.|++. +..+..|.
T Consensus 268 ~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------- 337 (412)
T PTZ00433 268 GNGGDFLDGMKRLGML--VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPR-------- 337 (412)
T ss_pred ccHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC--------
Confidence 3566666554331 123344444444444433 1 335556667788999999999875 44444444
Q ss_pred HHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHhh
Q 020548 214 LLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ 247 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l~ 247 (324)
+|.++|+.++.. ....++++.+.
T Consensus 338 -----------gg~f~~~~l~~~~~~~~~~~~~~~~~ll 365 (412)
T PTZ00433 338 -----------GSMFLMSRLDLEKFRDIKSDVEFYEKLL 365 (412)
T ss_pred -----------eeEEEEEEechhhcCCCCCHHHHHHHHH
Confidence 678899998631 13456666654
No 99
>PRK07550 hypothetical protein; Provisional
Probab=99.96 E-value=2.2e-27 Score=213.80 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=161.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++.+ |++++++++ +.++++|++++|+|
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~P~N 174 (386)
T PRK07550 101 QAFWAAMVTLAGAGDEVILPLPWYFNHKMWLD-----MLGIRPVYLPCDEGPGLLPDPAAAEALI-TPRTRAIALVTPNN 174 (386)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEecCCCcCCCCCHHHHHHHh-cccCcEEEEeCCCC
Confidence 57888888899999999999999999987773 368888777753 688899999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---c---cC---C-CCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P---AR---L-GADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~---~~---~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... + .. . ...+++.|+||.++.+|.|+ ||++++++
T Consensus 175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~i~~~~~ 253 (386)
T PRK07550 175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRV-GAVVASPA 253 (386)
T ss_pred CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccce-EeeecCHH
Confidence 9999986 779999999999999999999655321 1 11 1 24688999999999899997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+..... ....+.+.+.+.++..++..... +....+.+.++++.+.+.|++.+ ..+ .|.
T Consensus 254 ~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-------------- 317 (386)
T PRK07550 254 RIAEIEKFMD-TVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWEL-LAS-------------- 317 (386)
T ss_pred HHHHHHHHHh-hcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCC--------------
Confidence 9988887654 11223344445454444444222 33444567888899999998863 222 122
Q ss_pred ccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 220 NKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|+.++. ..+..++.+.+
T Consensus 318 -----g~~~~~~~~~~~~~~~~~l~~~l 340 (386)
T PRK07550 318 -----GAYFAYVRHPFPDRPSREVARRL 340 (386)
T ss_pred -----ceEEEEecCCCCCCCHHHHHHHH
Confidence 57788998864 34456677664
No 100
>PRK09105 putative aminotransferase; Provisional
Probab=99.96 E-value=1.3e-27 Score=213.43 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=175.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++. .++++++++++|||||
T Consensus 106 ~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~~v~l~nP~NPT 178 (370)
T PRK09105 106 EPLNYAVLAFTSPTAGLVTADPTYEAGWRAAD-----AQGAPVAKVPLRADGAHDVKAMLAA--DPNAGLIYICNPNNPT 178 (370)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEecCCCCCCCCHHHHHhc--CCCCCEEEEeCCCCCC
Confidence 57888888999999999999999999988774 367787777553 67888765 3568999999999999
Q ss_pred ccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc--cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 77 LAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP--AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 77 G~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~--~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|.+.+.+++.++++. +++++|+||+|..+...+ .. ....++++|+||.||++|+|+ ||+++++++++.+..
T Consensus 179 G~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRi-G~~v~~~~~i~~l~~ 257 (370)
T PRK09105 179 GTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRL-GLAAARPDLLAKLAR 257 (370)
T ss_pred CcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccce-eeeecCHHHHHHHHh
Confidence 999998888877654 489999999995553222 11 245689999999999999997 999999999988876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
... ...+.+.+.++...+....+++...+++.++++.+.+.|++.+..+..| .|++
T Consensus 258 ~~~----~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--------------------~~~f 313 (370)
T PRK09105 258 FGH----NPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKGYKCTPS--------------------QANC 313 (370)
T ss_pred cCC----CCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC--------------------CCcE
Confidence 522 2233333334433444434455666778899999999999987654422 3556
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++. +..++.+.+.. .|+ . .|.. + +..++++|+|++ . .+..+.
T Consensus 314 ~~~~~~~--~~~~l~~~L~~---~gI-~--v~~~------~----------------~~~~~~~Ris~~-~---~~~~~~ 359 (370)
T PRK09105 314 FMVDVKR--PAKAVADAMAK---QGV-F--IGRS------W----------------PIWPNWVRVTVG-S---EEEMAA 359 (370)
T ss_pred EEEeCCC--CHHHHHHHHHH---CCc-E--EecC------C----------------CCCCCeEEEEcC-C---HHHHHH
Confidence 6777752 24456666653 232 1 1110 0 112478999999 4 234566
Q ss_pred HHHHHHhh
Q 020548 309 FEKALSRM 316 (324)
Q Consensus 309 l~~~l~~~ 316 (324)
+.++|+.+
T Consensus 360 l~~al~~~ 367 (370)
T PRK09105 360 FRSAFAKV 367 (370)
T ss_pred HHHHHHHH
Confidence 66666654
No 101
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.96 E-value=2.4e-27 Score=220.45 Aligned_cols=195 Identities=17% Similarity=0.173 Sum_probs=140.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++. .|++++++++ ++++++|++++|||
T Consensus 219 eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~k~i~i~nP~N 292 (517)
T PRK13355 219 ELINLSMSALLDDGDEVLIPSPDYPLWTACVN-----LAGGTAVHYRCDEQSEWYPDIDDIRSKI-TSRTKAIVIINPNN 292 (517)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHH-----HCCCEEEEeecCcccCCCCCHHHHHHhc-CcCceEEEEECCCC
Confidence 57888899999999999999999999988773 36777766643 2789999998 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC--C-CcEEEeCCccccccCCCeeEEEEE--cCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL--G-ADVVVHSISKFISGGADIIAGAVC--GPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~--~-~d~~~~S~sK~~~~~g~r~~G~i~--~~~ 140 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++. ... + ..++++|+||.|+++|+|+ ||++ +++
T Consensus 293 PTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~Ri-G~~i~~~~~ 371 (517)
T PRK13355 293 PTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRI-GWMILSGNK 371 (517)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccce-EEEEeeCch
Confidence 9999987 7889999999999999999997665321 111 1 2455699999999999997 9998 445
Q ss_pred hH----HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHH---HHHHHHHHHHHHHHHHhC-CCceeCCC
Q 020548 141 NL----VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR---MKEHCHRALIFARRMKKL-GLKVLYPG 205 (324)
Q Consensus 141 ~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~L~~~-~~~~~~p~ 205 (324)
++ .+.+..... ...+.+.+.+.++..++......... .+++.++++.+.+.|++. +..+..|.
T Consensus 372 ~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 442 (517)
T PRK13355 372 RIAKDYIEGLNMLAN--MRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVKPK 442 (517)
T ss_pred hhHHHHHHHHHHHhc--CcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 44 333332221 11334445555555555433222222 334566788999999887 44554444
No 102
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1e-27 Score=213.70 Aligned_cols=252 Identities=18% Similarity=0.232 Sum_probs=180.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++++++++||+|++++|+|..+...++ ..|.++..++.+ |++++++++...++++|++++|+|||
T Consensus 92 ~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPt 166 (356)
T PRK04870 92 ELIQLLALACAKPGATVLAPEPGFVMYRMSAK-----LAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPT 166 (356)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCHHHHHHHHH-----HcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence 56778888889999999999999999888773 378888887653 78999999844689999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.++++..+.++|+||+|..+.... ...+..+++.|+|| ++.+|.|+ ||+++++++++.+.....
T Consensus 167 G~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRi-G~~i~~~~~i~~~~~~~~ 244 (356)
T PRK04870 167 GNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRL-GYLAGHPAWIAELDKVRP 244 (356)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhh-hhhhCCHHHHHHHHHccC
Confidence 999998888888877688999999996664321 12256799999999 89999997 999999999998887654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
. ...+.+.+.++..++.....++...+++.++++.+.+.|++. +..+ .|. .|+++|
T Consensus 245 ~---~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-------------------~~~~~~ 301 (356)
T PRK04870 245 P---YNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTV-FPS-------------------AANFIL 301 (356)
T ss_pred C---CcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC-------------------CCeEEE
Confidence 1 223334444444444443445566677888999999999887 3333 343 467999
Q ss_pred EEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 231 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.+++ ...+.+.+.. .|+ .+ .++..+. +..++++|+|++ . .+..+.|.
T Consensus 302 ~~~~~---~~~~~~~l~~---~gI-~v----------~~~~~f~-----------~~~~~~iRis~~-~---~~~~~~l~ 349 (356)
T PRK04870 302 VRVPD---AAAVFDGLKT---RGV-LV----------KNLSGMH-----------PLLANCLRVTVG-T---PEENAQFL 349 (356)
T ss_pred EECCC---HHHHHHHHHH---CCE-EE----------EECCCCC-----------CCCCCeEEEeCC-C---HHHHHHHH
Confidence 99873 3445555553 333 11 2221110 112479999999 3 34456666
Q ss_pred HHHHh
Q 020548 311 KALSR 315 (324)
Q Consensus 311 ~~l~~ 315 (324)
++|++
T Consensus 350 ~al~~ 354 (356)
T PRK04870 350 AALKA 354 (356)
T ss_pred HHHHH
Confidence 66654
No 103
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.96 E-value=7.4e-27 Score=197.17 Aligned_cols=259 Identities=22% Similarity=0.241 Sum_probs=183.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+-||..+++++.+|||.|++..|.|+++....+ ..|-++...|.. |.++|++++.+++++++++|+|
T Consensus 93 Vpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~-----~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnP 167 (388)
T COG1168 93 VPGISLAIRALTKPGDGVVIQTPVYPPFYNAIK-----LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNP 167 (388)
T ss_pred hHhHHHHHHHhCcCCCeeEecCCCchHHHHHHh-----hcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCC
Confidence 357899999999999999999999999999884 366667666542 9999999997788999999999
Q ss_pred CCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCccC------C-----CCcEEEeCCccccccCCCeeEEEE-E
Q 020548 73 SNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPAR------L-----GADVVVHSISKFISGGADIIAGAV-C 137 (324)
Q Consensus 73 ~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~------~-----~~d~~~~S~sK~~~~~g~r~~G~i-~ 137 (324)
|||||.+. ++..|.++|.+||++||.||.++++...... . +..+.+.|.||+|..+|... +++ +
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~-a~~Ii 246 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKC-AYIII 246 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhh-eeEEe
Confidence 99999996 5778899999999999999999777543211 1 45689999999999999996 666 5
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHH-HHh-cCcccHHHHHHHHHHHHHHHHHHHHhC--CCceeCCCCCCCchhH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELS-ERIPHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~~~~~~~ 213 (324)
.++++..+..+... .....+++.....+. .+. .+-.++++..+-+..|++++.+.|+++ +.++..|.
T Consensus 247 ~n~~lr~~~~~~l~-~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~-------- 317 (388)
T COG1168 247 SNRELRAKFLKRLK-RNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQ-------- 317 (388)
T ss_pred cCHHHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCC--------
Confidence 56666555444333 111333332222222 232 344567767677799999999999997 44777776
Q ss_pred HHHHHhccCCCcceEEEEEeC----C-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC-
Q 020548 214 LLKSMANKEYGFGGLLCLDME----T-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI- 287 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~----~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (324)
+.++.|+++. + .+..+.+++..+. +++.| ..+ |.
T Consensus 318 -----------gTYL~WLD~r~l~l~d~~l~~~ll~~akV-------al~~G----------~~F------------G~~ 357 (388)
T COG1168 318 -----------GTYLAWLDCRELGLDDSELAEFLLEEAKV-------ALSPG----------STF------------GEE 357 (388)
T ss_pred -----------CceeeeeeccccCCChHHHHHHHHHhhcE-------eccCC----------Ccc------------CcC
Confidence 7889999987 2 2333444444442 33333 222 22
Q ss_pred CCCeEEEEeccCC--CHHHHHHHHHHHHHh
Q 020548 288 SAGLVRMSVGYLG--TLDQRWSQFEKALSR 315 (324)
Q Consensus 288 ~~~~iR~s~g~~~--~~~~~~~~l~~~l~~ 315 (324)
..+++|+.++ .. ..++.++++..+|++
T Consensus 358 g~gf~RlN~a-cpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 358 GSGFVRLNFA-CPRAILEEALERLKRALKK 386 (388)
T ss_pred CCceEEEecC-CCHHHHHHHHHHHHHHHhc
Confidence 2489999999 53 445555555555544
No 104
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.96 E-value=2.5e-27 Score=214.43 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=157.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|..+...++ ..|.++..++. .|++++++.+ +.+++++++++|+|
T Consensus 106 ~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~-----~~g~~v~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~N 179 (401)
T TIGR01264 106 HAIEMCIAALANAGQNILVPRPGFPLYETLAE-----SMGIEVKLYNLLPDKSWEIDLKQLESLI-DEKTAALIVNNPSN 179 (401)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCChhHHHHHH-----HcCCEEEEeecCCccCCCCCHHHHHHHh-ccCceEEEEcCCCC
Confidence 57888889999999999999999999987774 36777777654 2789999988 67889999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEcCh--
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCGPA-- 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~-- 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ..+ ...++++|+||.|+++|.|+ ||+++++
T Consensus 180 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~iv~~~~~ 258 (401)
T TIGR01264 180 PCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRL-GWIIIHDRR 258 (401)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceE-EEEEecCcc
Confidence 9999975 7788999999999999999997664321 111 23689999999999999997 9998763
Q ss_pred ----hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhH
Q 020548 141 ----NLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHE 213 (324)
Q Consensus 141 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~ 213 (324)
++++.+...... ....+.+.+.++..++.. ..++....+++.++++.+.+.|++++ ..+..|.
T Consensus 259 ~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------- 328 (401)
T TIGR01264 259 GILRDIRDGLVKLSQR--ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPS-------- 328 (401)
T ss_pred hhHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC--------
Confidence 344444433220 122344555555445533 23355666778889999999999873 3433444
Q ss_pred HHHHHhccCCCcceEEEEEeCC-----HHHHHHHHHHh
Q 020548 214 LLKSMANKEYGFGGLLCLDMET-----EEKANRLMNYL 246 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~-----~~~~~~~~~~l 246 (324)
+|.++|+.++. ......+.+.+
T Consensus 329 -----------~g~f~~~~~~~~~~~~~~~~~~~~~~l 355 (401)
T TIGR01264 329 -----------GAMYMMVGIEMEHFPEFKNDVEFTERL 355 (401)
T ss_pred -----------eeeEEEEEecccccCCCCCHHHHHHHH
Confidence 68899999752 11244555554
No 105
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.96 E-value=5.3e-27 Score=211.96 Aligned_cols=207 Identities=19% Similarity=0.232 Sum_probs=155.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~N 175 (393)
T PRK05764 102 QALYNAFMALLDPGDEVIIPAPYWVSYPEMVK-----LAGGVPVFVPTGEENGFKLTVEQLEAAI-TPKTKALILNSPSN 175 (393)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCcchHHHHH-----HcCCEEEEEecCcccCCcCCHHHHHHhh-CccceEEEEECCCC
Confidence 57888888889999999999999999887773 367887777653 579999998 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c------cCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P------ARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|+++++|++|+.+... + ...+.+++++|+||.++.+|.|+ ||+++++
T Consensus 176 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~i~~~~ 254 (393)
T PRK05764 176 PTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL-GYAAGPK 254 (393)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcccee-EEEecCH
Confidence 9999975 778999999999999999999655321 1 11257899999999999899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+...... .....+.+.+..+...+.. ..++....+.+.++++.+.+.|+++ +..+..|.
T Consensus 255 ~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------------- 320 (393)
T PRK05764 255 ELIKAMSKLQSH-STSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPE------------- 320 (393)
T ss_pred HHHHHHHHHHhh-cccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-------------
Confidence 999988776541 1112233333333334432 2334455566788889999999987 55544333
Q ss_pred hccCCCcceEEEEEeCC
Q 020548 219 ANKEYGFGGLLCLDMET 235 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 321 ------g~~~~~~~~~~ 331 (393)
T PRK05764 321 ------GAFYVFPNVSK 331 (393)
T ss_pred ------cceEEEEeccc
Confidence 56678888863
No 106
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.96 E-value=3.4e-27 Score=213.44 Aligned_cols=206 Identities=20% Similarity=0.199 Sum_probs=154.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...+.. .+..+..++. .|++++++.+ +++++++++++|+|
T Consensus 104 ~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~N 177 (402)
T PRK06107 104 QAIFLALMATLEAGDEVIIPAPYWVSYPDMVLA-----NDGTPVIVACPEEQGFKLTPEALEAAI-TPRTRWLILNAPSN 177 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHH-----cCCEEEEecCCcccCCCCCHHHHHhhc-CcCceEEEEECCCC
Confidence 578888888899999999999999988876632 3444444432 2678999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhc-CCEEEEcCCCCcCCCCc------cC-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 75 PTLAVAN---IPELSRLAHDK-GVTVVVDNTFSPLVLSP------AR-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~-~~~~ivD~~~~~~~~~~------~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|||.+.+ +++++++|+++ ++++|+||+|..+.+.. .. .+..++++|+||.|+.+|.|+ ||++++
T Consensus 178 PtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~~~~ 256 (402)
T PRK06107 178 PTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRI-GYAAGP 256 (402)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccce-eeeecC
Confidence 9999986 56778889998 99999999996553211 11 136799999999999899997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++.+.+..... ....+.+.+.+.++..++.. ..++....+.+.++++.+.+.|++. +..+..|.
T Consensus 257 ~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~------------ 323 (402)
T PRK06107 257 ADLIAAINKLQS-QSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPD------------ 323 (402)
T ss_pred HHHHHHHHHHHH-hcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC------------
Confidence 999998887765 11233455555555555542 2345566677899999999999886 43444343
Q ss_pred HhccCCCcceEEEEEeC
Q 020548 218 MANKEYGFGGLLCLDME 234 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|+.++
T Consensus 324 -------gg~~~~~~~~ 333 (402)
T PRK06107 324 -------GAFYLYVNCA 333 (402)
T ss_pred -------cceEEeeecc
Confidence 5778888873
No 107
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=9.5e-28 Score=213.11 Aligned_cols=214 Identities=15% Similarity=0.180 Sum_probs=158.9
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
++|..++++++++| |+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ .++++|++++||||
T Consensus 85 e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~-----~~G~~~~~v~~~~~~~~d~~~l~~~~--~~~~lv~l~nPnNP 157 (351)
T PRK01688 85 EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVEIRTVPTLDNWQLDLPAIADNL--DGVKVVYVCSPNNP 157 (351)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH-----HcCCEEEEeecCCCCCCCHHHHHHhc--cCCcEEEEeCCCCC
Confidence 57888888889997 999999999999987773 368887777653 788998877 47899999999999
Q ss_pred cccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||.+.+.+++.++++. .+.++|+||+|..|.... ...+..++++|+||+||.+|.|+ ||+++++++++.+.
T Consensus 158 TG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRi-Gy~i~~~~~i~~l~ 236 (351)
T PRK01688 158 TGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRC-GFTLANEEVINLLL 236 (351)
T ss_pred CCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHH-hHHhCCHHHHHHHH
Confidence 9999987776666543 268999999997765321 12357899999999999999997 99999999999988
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+.... +..+.+.+..+..++.. ...+...++.+.++++++.+.|++.+. ....|+
T Consensus 237 ~~~~~---~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps------------------- 294 (351)
T PRK01688 237 KVIAP---YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDS------------------- 294 (351)
T ss_pred hccCC---CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC-------------------
Confidence 76552 23333444444444432 234556666778889999999998743 334455
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.++++++.+++ ...+.+.|..
T Consensus 295 ~~nfi~~~~~~---~~~l~~~L~~ 315 (351)
T PRK01688 295 ETNYILARFTA---SSAVFKSLWD 315 (351)
T ss_pred CCcEEEEEcCC---HHHHHHHHHH
Confidence 57789998863 3456666553
No 108
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.96 E-value=7.9e-27 Score=215.26 Aligned_cols=206 Identities=18% Similarity=0.146 Sum_probs=151.7
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEE
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~ 68 (324)
+||..++++++ ++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++.. .++++++
T Consensus 149 ~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~ 223 (481)
T PTZ00377 149 SGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT-----LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALV 223 (481)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEE
Confidence 57888999988 799999999999999998884 356666666532 67999998832 1799999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc--------CCC-------CcEEEeCCccc-cc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA--------RLG-------ADVVVHSISKF-IS 126 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~--------~~~-------~d~~~~S~sK~-~~ 126 (324)
+++||||||.+++ +++|+++|+++|++||+||+|..+.++ +. .+. ..++++|+||. ++
T Consensus 224 l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~ 303 (481)
T PTZ00377 224 VINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIG 303 (481)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCccccc
Confidence 9999999999987 788999999999999999999665431 11 111 35889999997 58
Q ss_pred cCCCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----c---cHH----HHHHHHHHHHHHHHH
Q 020548 127 GGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----P---HLG----LRMKEHCHRALIFAR 192 (324)
Q Consensus 127 ~~g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~----~~~~~~~~~~~~l~~ 192 (324)
++|+|+ ||+++ ++++++.+..... . ..+.+.+.+.++..++... . ... ...+++.++++.+.+
T Consensus 304 ~~GlRi-G~~~~~~~p~~li~~l~~~~~-~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~ 380 (481)
T PTZ00377 304 ECGRRG-GYFELTNIPPEVREQIYKLAS-I-NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTD 380 (481)
T ss_pred CCcCce-EEEEEeCCCHHHHHHHHHHhh-e-ecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899997 99985 8899998887654 1 1344555666655555421 1 121 222346788999999
Q ss_pred HHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|+++ +..+..|. +|.++|+.++
T Consensus 381 ~L~~~~g~~~~~p~-------------------gg~fl~~~~~ 404 (481)
T PTZ00377 381 ELNKIEGVSCQPVE-------------------GAMYAFPRIE 404 (481)
T ss_pred HHhcCCCcEeecCC-------------------eeEEEEeecc
Confidence 99887 44555454 5777886664
No 109
>PLN02656 tyrosine transaminase
Probab=99.96 E-value=7.5e-27 Score=211.47 Aligned_cols=205 Identities=15% Similarity=0.140 Sum_probs=154.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+..... ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 107 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~N 180 (409)
T PLN02656 107 QAIDVALSMLARPGANILLPRPGFPIYELCAA-----FRHLEVRYVDLLPEKGWEVDLDAVEALA-DQNTVALVIINPGN 180 (409)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHH-----HcCCEEEEEeCCCcCCCCCCHHHHHHHh-ccCceEEEEECCCC
Confidence 57888888889999999999999998876652 26777777664 2789999988 77899999999999
Q ss_pred Cccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEcC---
Q 020548 75 PTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCGP--- 139 (324)
Q Consensus 75 ptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~--- 139 (324)
|||.+. ++++|+++|+++|+++|+||+|..+.++. . .....++++|+||.|+++|+|+ ||++++
T Consensus 181 PtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRi-G~~i~~~~~ 259 (409)
T PLN02656 181 PCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRL-GWFVTTDPS 259 (409)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeE-EEEEEeCcc
Confidence 999996 57888999999999999999997664321 1 1136799999999999999997 999983
Q ss_pred -----hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCCc
Q 020548 140 -----ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDHP 210 (324)
Q Consensus 140 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~~ 210 (324)
+++++.+...... ..+.+.+.+.++..++... ..+....+++.++++.+.+.|++.+. . +..|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~----- 332 (409)
T PLN02656 260 GSFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPE----- 332 (409)
T ss_pred cccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCC-----
Confidence 5777877765441 1223344555555555432 23556667788899999999988643 2 12233
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 333 --------------gg~~~w~~l~ 342 (409)
T PLN02656 333 --------------GSMAVMVKLN 342 (409)
T ss_pred --------------eEEEEEEecc
Confidence 6788999985
No 110
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=5.1e-27 Score=210.14 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=176.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++++++++||+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 99 ~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPt 172 (371)
T PRK05166 99 DLIAVICRAVLRPGDRVVTLYPSFPLHEDYPT-----MMGARVERVTVTPDLGFDLDALCAAV-ARAPRMLMFSNPSNPV 172 (371)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCeEEEeecCCCCCCCHHHHHHhh-hcCCCEEEEeCCCCCC
Confidence 57788888889999999999999998887763 268888777653 789999988 7788999999999999
Q ss_pred ccccChHHHHHHHHh--cCCEEEEcCCCCcCCCC----c-c----CC-CCcEEEeCCccccccCCCeeEEEEEc-ChhHH
Q 020548 77 LAVANIPELSRLAHD--KGVTVVVDNTFSPLVLS----P-A----RL-GADVVVHSISKFISGGADIIAGAVCG-PANLV 143 (324)
Q Consensus 77 G~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~----~-~----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~ 143 (324)
|.+.+.+++.++++. .++++|+||+|..+... + . +. ...++++|+||.|+.+|.|+ ||++. ++++.
T Consensus 173 G~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRi-G~~i~~~~~l~ 251 (371)
T PRK05166 173 GSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRV-GYGLVSDPELV 251 (371)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhhe-eeeecCCHHHH
Confidence 999987766666653 47899999999665421 1 1 11 35699999999999899997 99764 77888
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+.+...... ...+.+.+..+...+....+++...+.+.++++.+.+.|++.+..+ .|.
T Consensus 252 ~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~-~p~------------------ 309 (371)
T PRK05166 252 GLLDRVRTP---FNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMGYRI-APS------------------ 309 (371)
T ss_pred HHHHHhccC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcCee-CCC------------------
Confidence 888765431 2233344434443444334566666778888999999999987653 343
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.|.++|+.++. ....+.+.+.. .|+ .+ .|+.. .+ ..+++|+|++ ..
T Consensus 310 -~g~fl~~~~~~--~~~~l~~~l~~---~gi-~v----------~p~~~------------~~-~~~~iRi~~~-~~--- 355 (371)
T PRK05166 310 -RANFLFFDARR--PASAVAEALLR---QGV-IV----------KPWKQ------------PG-FETFIRVSIG-SP--- 355 (371)
T ss_pred -cCCEEEEeCCC--CHHHHHHHHHH---CCe-EE----------ecCCC------------CC-CCCeEEEEcC-CH---
Confidence 46788998752 24556666653 233 11 22111 01 2589999999 43
Q ss_pred HHHHHHHHHHHhh
Q 020548 304 QRWSQFEKALSRM 316 (324)
Q Consensus 304 ~~~~~l~~~l~~~ 316 (324)
+..+.|.++|+.+
T Consensus 356 ~~~~~l~~~l~~i 368 (371)
T PRK05166 356 EENDHFVAALDKV 368 (371)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566666554
No 111
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1.6e-27 Score=212.34 Aligned_cols=215 Identities=14% Similarity=0.131 Sum_probs=158.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+||..+++++++|||+|++++|+|+.+...++ ..|.++..++.+ |++++++ .+++|++++|||||
T Consensus 88 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~-----~~~~v~~~~P~NPt 157 (353)
T PRK05387 88 EVLAHAFLAFFNHDRPLLFPDITYSFYPVYAG-----LYGIPYEEIPLDDDFSIDVEDYLR-----PNGGIIFPNPNAPT 157 (353)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHH-----HcCCEEEEeecCCCCCCCHHHHHh-----cCCEEEEeCCCCCC
Confidence 67889999999999999999999988887663 367777777653 5666642 45789999999999
Q ss_pred ccccChHHHHHHHHhc-CCEEEEcCCCCcCCCCc-c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 77 LAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSP-A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~~~-~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.+.+.+++.++++.+ ++++|+||+|..+...+ . ..+.+++++|+||.++.+|.|+ ||+++++++.+.+....
T Consensus 158 G~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~~~~~~~~~~~l~~~~ 236 (353)
T PRK05387 158 GIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRV-GFAIGHPELIEALNRVK 236 (353)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhc-eeeecCHHHHHHHHHhh
Confidence 9999999999998875 99999999996553211 1 1256899999999999999997 99999999999887765
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
........+.+.+.++..++.....+++..+++.++++.+.+.|++.+..+ .|. .|+++|
T Consensus 237 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~-------------------~~~~~~ 296 (353)
T PRK05387 237 NSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALGFEV-LPS-------------------KANFVF 296 (353)
T ss_pred ccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeE-CCC-------------------cCcEEE
Confidence 411011222334444434444334455666777889999999999987654 243 466888
Q ss_pred EEeCCHHHHHHHHHHhhc
Q 020548 231 LDMETEEKANRLMNYLQN 248 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~ 248 (324)
+.+++ .+..++.+.+..
T Consensus 297 ~~~~~-~~~~~~~~~l~~ 313 (353)
T PRK05387 297 ARHPS-HDAAELAAKLRE 313 (353)
T ss_pred EECCC-CCHHHHHHHHHH
Confidence 88863 235566666653
No 112
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=3.7e-27 Score=210.98 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=148.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..+++++++|||.|+++.|+|+.+...++ ..|.++..++. .|++++++++..++++++++++|+|||
T Consensus 99 ~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPt 173 (368)
T PRK03317 99 EILQQLLQAFGGPGRTALGFVPSYSMHPIIAR-----GTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPT 173 (368)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----hcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCC
Confidence 57889999999999999999999999988774 25666666543 278999999844688999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|.+.+.+++.++++..++++|+||+|+.+.... .. .+..++++|+||.||.+|.|+ ||+++++++++.+..
T Consensus 174 G~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~~~~~~~~~~l~~ 252 (368)
T PRK03317 174 GTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRL-GYLAAAPAVVDALRL 252 (368)
T ss_pred CCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhh-hhhhCCHHHHHHHHh
Confidence 999999999999999899999999997664221 11 135689999999999899997 999999999998876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
... .+..+.+.+.++..++.....+.+.++++.++++.+.+.|++.+..+.
T Consensus 253 ~~~---~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (368)
T PRK03317 253 VRL---PYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRELGLRVA 303 (368)
T ss_pred cCC---CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCEeC
Confidence 553 133344444444444444344445566678888899999998876544
No 113
>PRK09265 aminotransferase AlaT; Validated
Probab=99.96 E-value=1.5e-26 Score=209.50 Aligned_cols=206 Identities=15% Similarity=0.115 Sum_probs=146.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..++++++++||+|++++|+|..+...++ ..|.++..++. .|++++++++ ++++++|++++|+|
T Consensus 106 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~N 179 (404)
T PRK09265 106 ELIVMAMQALLNNGDEVLVPAPDYPLWTAAVS-----LSGGKPVHYLCDEEAGWFPDLDDIRSKI-TPRTKAIVIINPNN 179 (404)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcChHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHhc-cccceEEEEECCCC
Confidence 46788888889999999999999999888774 24555544432 2689999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEc--Ch
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCG--PA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~--~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ... ...++++|+||.|+++|+|+ ||++. ++
T Consensus 180 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~~ 258 (404)
T PRK09265 180 PTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRV-GWMVLSGPK 258 (404)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccce-EEEEEeCch
Confidence 9999988 8889999999999999999996654221 111 24578899999999999997 99984 44
Q ss_pred hH----HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHH---HHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchh
Q 020548 141 NL----VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR---MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHH 212 (324)
Q Consensus 141 ~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~ 212 (324)
++ ++.+..... ...+.+.+.+.++..++...+..... .+++.++++.+.+.|++. +..+..|.
T Consensus 259 ~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~------- 329 (404)
T PRK09265 259 KHAKGYIEGLDMLAS--MRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPK------- 329 (404)
T ss_pred HHHHHHHHHHHHHhc--cccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC-------
Confidence 43 333322211 11334455555555555433333322 245677788899999876 33444344
Q ss_pred HHHHHHhccCCCcceEEEEEeCC
Q 020548 213 ELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 330 ------------~g~~l~~~~~~ 340 (404)
T PRK09265 330 ------------GALYAFPKLDP 340 (404)
T ss_pred ------------cceEEEEEecc
Confidence 68889988863
No 114
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.96 E-value=3e-27 Score=211.26 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=156.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++.+++++||+|++++|+|+.+...++ ..|.++..++. .|++++++.+ +++++++++++|+|||
T Consensus 98 ~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~p~npt 171 (361)
T PRK00950 98 EVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK-----AHGAKPVYAKREEDFSLDVDSVLNAI-TEKTKVIFLCTPNNPT 171 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeecCCCCCcCHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 35677778888999999999999998877663 26777777753 2789999988 7789999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc---c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP---A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.++|+++|+++|+|++|.++.... . ..+..++++|+||.+|++|.|+ ||+++++++++.+.....
T Consensus 172 G~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~ 250 (361)
T PRK00950 172 GNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRI-GYGFVPEWLIDYYMRAKT 250 (361)
T ss_pred CCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhc-chhcCCHHHHHHHHHhcC
Confidence 999999999999999999999999996654211 1 2245789999999999899997 999999999988877654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
. ...+.+.+..+..++....+++...+++.++++.+.+.|. ..+ .|. .|+++|+
T Consensus 251 ~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---~~~-~~~-------------------~~~~i~~ 304 (361)
T PRK00950 251 P---FSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP---FKV-YPS-------------------EANFVLV 304 (361)
T ss_pred C---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---eeE-CCC-------------------cceEEEE
Confidence 1 2233334333333444333344455556666777766664 222 233 4678999
Q ss_pred EeCCHHHHHHHHHHhhc
Q 020548 232 DMETEEKANRLMNYLQN 248 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~ 248 (324)
.+++ .+...+.+.+..
T Consensus 305 ~~~~-~~~~~~~~~l~~ 320 (361)
T PRK00950 305 DVTP-MTAKEFCEELLK 320 (361)
T ss_pred ECCC-CCHHHHHHHHHH
Confidence 8853 345667777664
No 115
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.96 E-value=3.5e-27 Score=209.63 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=163.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++.+++++||+|++++|+|+.+...++ ..|.++..++. .|++++++++ ++++++|++++|+|||
T Consensus 82 ~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~Npt 155 (346)
T TIGR01141 82 EIIELLIRAFLEPGDAVLVPPPTYSMYEISAK-----IHGAEVVKVPLDEDGQLDLEDILVAI-DDKPKLVFLCSPNNPT 155 (346)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEeccCCCCCCCHHHHHHhc-CCCCCEEEEeCCCCCC
Confidence 46778888888999999999999988776653 26888877765 3889999987 7889999999999999
Q ss_pred ccccChHHHHHHHHhc--CCEEEEcCCCCcCCCC--cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 77 LAVANIPELSRLAHDK--GVTVVVDNTFSPLVLS--PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~--~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|.+.+++++.++++.+ |+++|+|++|..+... +. ..+.+++++|+||+++++|.|+ ||++.++++.+.+..
T Consensus 156 G~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 156 GNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRI-GYAIANAEIIDALNK 234 (346)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhc-eeeecCHHHHHHHHh
Confidence 9999999999998877 9999999999655432 11 1245688999999999899997 999999999998877
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
.... ...+.+.+..+..++....++....+++.++++.+.+.|+++ +.++ .|. .|+
T Consensus 235 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~-------------------~g~ 291 (346)
T TIGR01141 235 VRAP---FNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEV-YPS-------------------DAN 291 (346)
T ss_pred ccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-CCC-------------------cCC
Confidence 6541 223444444444444443345566677788999999999987 4443 233 467
Q ss_pred EEEEEeCCHHHHHHHHHHhhc
Q 020548 228 LLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~ 248 (324)
++|+.++. ..+++.+.+..
T Consensus 292 ~~~~~~~~--~~~~~~~~L~~ 310 (346)
T TIGR01141 292 FVLIRFPR--DADALFEALLE 310 (346)
T ss_pred EEEEecCC--CHHHHHHHHHH
Confidence 89999874 45667777664
No 116
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.96 E-value=9e-27 Score=205.12 Aligned_cols=246 Identities=18% Similarity=0.179 Sum_probs=171.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+||..++ .+.+||+|++++|+|+.+...++ ..|.++..++. +++++.+ + +++++++++||||||.+.+
T Consensus 75 ~al~~~~--~~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~---~~~~~~~-~-~~~~v~l~nP~NPTG~~~s 142 (330)
T PRK05664 75 AAIQALP--RLRAPGRVGVLSPCYAEHAHAWR-----RAGHQVRELDE---AEVEAAL-D-SLDVLVVVNPNNPTGRRFD 142 (330)
T ss_pred HHHHHHH--HccCCCEEEEcCCChHHHHHHHH-----HcCCeEEEech---hhHhhhh-c-CCCEEEEeCCcCCCCCccC
Confidence 4566554 35799999999999999998884 47889888864 4555655 3 6788999999999999987
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCC--CccC---CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVL--SPAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|+++|+++|+++|+||+|..+.. .... .+..++++||||.||.+|+|+ ||+++++++++.+......
T Consensus 143 ~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRi-G~~v~~~~l~~~~~~~~~~- 220 (330)
T PRK05664 143 PARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARL-GFVLAEPALLRALAELLGP- 220 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcce-EEEEeCHHHHHHHHHhcCC-
Confidence 45666667889999999999965532 1111 245699999999999899997 9999999999998876541
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
...+.+.+..+..++..........+++.++++.+.+.|++.+.. |. .+.+.++|+.+
T Consensus 221 --~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~-----------------~~~~~f~~~~~ 278 (330)
T PRK05664 221 --WTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHGLT---PA-----------------GGCALFQWVRT 278 (330)
T ss_pred --CCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCCCc---cc-----------------CCcceEEEEec
Confidence 223334444444445444444455666788999999999988642 22 02346778877
Q ss_pred CCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 234 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
++ ...+.+.+.. .|+.- .+ ++ .++++|+|+| . ..+..+.|.++|
T Consensus 279 ~~---~~~~~~~l~~---~gi~v-----------~~---------------f~-~~~~iRis~~-~--~~~~~~~l~~al 322 (330)
T PRK05664 279 ED---AAALHEFLAR---RGILT-----------RL---------------FE-QPASLRFGLP-A--DEADWARLDQAL 322 (330)
T ss_pred CC---HHHHHHHHHH---CCeEE-----------EE---------------CC-CCCeEEEECC-C--CHHHHHHHHHHH
Confidence 53 3556666553 33311 00 01 1368999999 5 344567888888
Q ss_pred Hhhhhc
Q 020548 314 SRMQDS 319 (324)
Q Consensus 314 ~~~~~~ 319 (324)
+.+.++
T Consensus 323 ~~~~~~ 328 (330)
T PRK05664 323 LAYRKE 328 (330)
T ss_pred HHHHhh
Confidence 877654
No 117
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.96 E-value=4.5e-27 Score=210.14 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=153.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+||..++..+ +++||+|++++|+|+.+...++ ..|.++..++ +++++. ..++++|++++|+||||.+.
T Consensus 97 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~--~~~~l~----~~~~~~v~~~~p~NPtG~~~ 165 (364)
T PRK07865 97 ELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR-----LAGATVVRAD--SLTELG----PQRPALIWLNSPSNPTGRVL 165 (364)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcccHHHHHH-----hcCCEEEecC--ChhhCC----cccceEEEEcCCCCCCCccC
Confidence 5677777777 7999999999999999987773 3688887765 444432 36789999999999999997
Q ss_pred C---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 81 N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 81 ~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
+ +++|+++|+++|+++|+||+|..+..+. . ..+..++++|+||.|+.+|.|+ ||+++++++++.
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~i~~~~~~~~~ 244 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRA-GFVAGDPALVAE 244 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceee-EEEecCHHHHHH
Confidence 6 5688888999999999999996554221 1 1235699999999999999997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+...... ...+.+.+.+..+..++.....+....+.+.++++.+.+.|++.+..+..|. +
T Consensus 245 ~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~ 304 (364)
T PRK07865 245 LLEVRKH-AGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAAGFRVDHSE-------------------A 304 (364)
T ss_pred HHHHHHh-cCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC-------------------c
Confidence 8876541 1122334444444444443334555666778899999999998876554443 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhh
Q 020548 226 GGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
|.++|+.++. ....+.+.+.
T Consensus 305 ~~~~~~~~~~--~~~~~~~~l~ 324 (364)
T PRK07865 305 GLYLWATRGE--DCWDTVAWLA 324 (364)
T ss_pred cEEEEEeCCC--CHHHHHHHHH
Confidence 6678888752 2334555554
No 118
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.96 E-value=1.1e-26 Score=210.08 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=158.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ +++++++++ ++++++|++++|+
T Consensus 99 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~g~~~~~~~~l~~~~-~~~~~~v~i~~p~ 172 (397)
T PRK07568 99 EAILFAMMAICDPGDEILVPEPFYANYNGFAT-----SAGVKIVPVTTKIEEGFHLPSKEEIEKLI-TPKTKAILISNPG 172 (397)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCccHHHHHH-----HcCCEEEEeecCcccCCCCCCHHHHHHhc-CccceEEEEECCC
Confidence 57888888889999999999999998877663 267777776642 468898888 7889999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcC-
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGP- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~- 139 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+.++. .. .+..+++.|+||.|+++|.|+ ||++++
T Consensus 173 NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~~~~~~ 251 (397)
T PRK07568 173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARI-GCLISKN 251 (397)
T ss_pred CCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcce-EEEecCC
Confidence 99999975 7889999999999999999997664221 11 135699999999999999997 999874
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+...... ..+.+.+.+.++..++... .++....+.+.++++.+.+.|++.+ ..+..|.
T Consensus 252 ~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------------ 317 (397)
T PRK07568 252 KELIAAAMKLCQA--RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPK------------ 317 (397)
T ss_pred HHHHHHHHHHhhc--cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC------------
Confidence 6787777654331 1334445555555555433 2345556667899999999998873 3444343
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|++++.. ....+.+.+
T Consensus 318 -------g~~~~~~~l~~~-~~~~~~~~l 338 (397)
T PRK07568 318 -------GAFYIIAKLPVD-DAEDFAKWL 338 (397)
T ss_pred -------cceEEEEecCCC-CHHHHHHHH
Confidence 566789998732 344555554
No 119
>PRK03321 putative aminotransferase; Provisional
Probab=99.96 E-value=1.9e-27 Score=211.70 Aligned_cols=215 Identities=17% Similarity=0.206 Sum_probs=161.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++..+++|||+|+++.|+|..+...++ ..|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 85 ~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPt 158 (352)
T PRK03321 85 ALCQQLVQATAGPGDEVIFAWRSFEAYPILVQ-----VAGATPVQVPLTPDHTHDLDAMAAAI-TDRTRLIFVCNPNNPT 158 (352)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHH-----HcCCEEEEccCCCCCCCCHHHHHHhh-ccCCCEEEEeCCCCCc
Confidence 35667777888999999999999998877663 267777777654 789999998 7789999999999999
Q ss_pred ccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 77 LAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 77 G~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|.+.+.+++.++|+. +++++|+||+|..+.... . ..+..++++|+||.||++|.|+ ||+++++++++.
T Consensus 159 G~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~v~~~~~~~~ 237 (352)
T PRK03321 159 GTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRV-GYAVGHPEVIAA 237 (352)
T ss_pred CCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhh-hhhcCCHHHHHH
Confidence 999999999999987 589999999996654321 1 1246799999999999899997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+...... ...+.+.+..+...+.....+.++.++..++++.+.+.|++.+..+. |. .
T Consensus 238 ~~~~~~~---~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~-~~-------------------~ 294 (352)
T PRK03321 238 LRKVAVP---FSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAAGWTVP-PS-------------------Q 294 (352)
T ss_pred HHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CC-------------------C
Confidence 8875431 33344444444444444444555666666777889999988765432 22 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhc
Q 020548 226 GGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
|+++|+.++. ....+.+.+..
T Consensus 295 g~~i~i~l~~--~~~~~~~~l~~ 315 (352)
T PRK03321 295 ANFVWLPLGE--RTADFAAAAAE 315 (352)
T ss_pred CCEEEEeCCC--CHHHHHHHHHH
Confidence 7789998853 24567777653
No 120
>PRK08363 alanine aminotransferase; Validated
Probab=99.96 E-value=2e-26 Score=208.38 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=144.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEe-cC------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DI------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~-~~------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..+ +. .|++++++.+ ++++++|++++|+|
T Consensus 104 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~N 177 (398)
T PRK08363 104 EALQLIFGALLDPGDEILIPGPSYPPYTGLVK-----FYGGVPVEYRTIEEEGWQPDIDDIRKKI-TEKTKAIAVINPNN 177 (398)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEEEeccccccCCcCCHHHHHhhC-CcceEEEEEECCCC
Confidence 57888898999999999999999999988774 256555554 22 2688999888 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC---CCCcEEEeCCccccccCCCeeEEEEEc--Chh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR---LGADVVVHSISKFISGGADIIAGAVCG--PAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~--~~~ 141 (324)
|||.+.+ +++|.++|+++|+++|+||+|..+.++. .. ....++++|+||+|+++|.|+ ||++. +++
T Consensus 178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~~~~~~~~~ 256 (398)
T PRK08363 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRL-GYIYFVDPEG 256 (398)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceE-EEEEEeCcHH
Confidence 9999986 8889999999999999999996654321 11 135788999999999999997 99986 777
Q ss_pred HHHHHHHhhhhh--hhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCC
Q 020548 142 LVNSMMDLHQGA--LMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYP 204 (324)
Q Consensus 142 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p 204 (324)
+++.+....... ...+.+.+.+..+..++.. ..++....+++.++++.+.+.|++.+ ..+..|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 323 (398)
T PRK08363 257 KLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKP 323 (398)
T ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCC
Confidence 776665443211 0123344555555545543 34455666778899999999998873 344333
No 121
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.96 E-value=2.4e-26 Score=207.99 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=157.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
++|+..++.+++++||+|++++|+|..+...+. ..|.++..++. .|++++++++ +++++++++++|+
T Consensus 106 t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~i~~p~ 179 (403)
T TIGR01265 106 SQAIEICIEALANPGANILVPRPGFPLYDTRAA-----FSGLEVRLYDLLPEKDWEIDLDGLEALA-DEKTVAIVVINPS 179 (403)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEecCCcccCCccCHHHHHHHh-CcCccEEEEecCC
Confidence 367888999999999999999999998877663 26777776653 2789999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEcC--
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCGP-- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~-- 139 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+.++. ..+ ...++++|+||.|+.||.|+ ||++++
T Consensus 180 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~ 258 (403)
T TIGR01265 180 NPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRL-GWIIIHDP 258 (403)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceE-EEEEEeCc
Confidence 99999975 7899999999999999999997764321 111 24689999999999999997 999873
Q ss_pred hh-----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 140 AN-----LVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 140 ~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
++ +.+.+...... ....+.+.+.++..++.. ..++....+++.++++.+.+.|++. +..+..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------ 330 (403)
T TIGR01265 259 HGIFRDTVLQGLKNLLQR--ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPE------ 330 (403)
T ss_pred hhhhHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC------
Confidence 22 33334333220 123344455555444432 2335566677888999999999887 33444444
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHh
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 246 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l 246 (324)
+|.++|++++.. .+...+++.+
T Consensus 331 -------------~g~f~~~~~~~~~~~~~~~~~~~~~~l 357 (403)
T TIGR01265 331 -------------GAMYLMVKLELELFPEIKDDVDFCEKL 357 (403)
T ss_pred -------------ceeEEEEeccccccCCCCCHHHHHHHH
Confidence 688999998632 1345565553
No 122
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.96 E-value=8.8e-27 Score=207.47 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=149.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CH-HHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DH-EMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~-~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+++..+++++ .+|| +++.+|+|..+...++ ..|.++..++.+ ++ +++++.+ ++++++|++++||||
T Consensus 83 ~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~~k~v~l~~p~NP 154 (356)
T PRK08056 83 ESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQ-----QVGCEIRRYSLREADGWQLTDAILEAL-TPDLDCLFLCTPNNP 154 (356)
T ss_pred HHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHH-----HcCCeEEEEecccccCCCccHHHHHhc-cCCCCEEEEeCCcCC
Confidence 4677777765 6776 6778899999887773 368888777642 22 3556666 688999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------c-CCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A-RLGADVVVHSISKFISGGADIIAGAVCG-PANLVN 144 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~ 144 (324)
||.+.+ +++|+++|+++++++|+||+|.++.... . ..+.+++++|+||+|+++|.|+ ||+++ ++++.+
T Consensus 155 TG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~~~~~~~~ 233 (356)
T PRK08056 155 TGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRL-GYLVNSDDAAVA 233 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhh-eeeecCCHHHHH
Confidence 999987 7788999999999999999996654221 1 2357899999999999999997 99997 467777
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+...... ...+.+.+.++..++....+.....+++.++++.+.+.|++.+. .+. |.
T Consensus 234 ~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~------------------ 291 (356)
T PRK08056 234 RMRRQQMP---WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW-PG------------------ 291 (356)
T ss_pred HHHHhCCC---CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CC------------------
Confidence 77664431 12222333333334433333445556678999999999988743 332 33
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|+++|+.++.. ...+.+.+..
T Consensus 292 -~~~~~~~~~~~~--~~~~~~~l~~ 313 (356)
T PRK08056 292 -RANYLFLRCERP--DIDLQRALLT 313 (356)
T ss_pred -CCcEEEEEcCCC--hHHHHHHHHH
Confidence 467889988632 3456666653
No 123
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.95 E-value=1.2e-26 Score=206.65 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=152.1
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++..+ +++||.|++++|+|+.+...++ ..|.++..++ +++.+. .+++++|++++|+||||.+.
T Consensus 91 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~--~~~~l~----~~~~~~v~~~~p~NPtG~~~ 159 (357)
T TIGR03539 91 ELVAWLPTLLGLGPGDTVVIPELAYPTYEVGAL-----LAGATPVAAD--DPTELD----PVGPDLIWLNSPGNPTGRVL 159 (357)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHH-----hcCCEEeccC--ChhhcC----ccCccEEEEeCCCCCcCccC
Confidence 4677777777 7999999999999999887763 3678777764 544332 46789999999999999998
Q ss_pred C---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c---c-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 81 N---IPELSRLAHDKGVTVVVDNTFSPLVLS--P---A-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 81 ~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~---~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
+ +++|.++|+++|+++|+||+|..+.++ + . .....++++|+||.|+++|+|+ ||+++++++++.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~-G~~i~~~~~~~~ 238 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA-GFVAGDPALVAE 238 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeE-EEEecCHHHHHH
Confidence 6 667889999999999999999654321 1 1 1235699999999999999997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+..... ....+.+.+.+.++..++.....+....+.+.++++.+.+.|++.+..+..|. +
T Consensus 239 ~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~-------------------~ 298 (357)
T TIGR03539 239 LLTVRK-HAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAGFRIDHSE-------------------A 298 (357)
T ss_pred HHHHHh-hcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-------------------c
Confidence 877654 11123333444444444433233445556678889999999998876554343 5
Q ss_pred ceEEEEEeCCHHHHHHHHHHhh
Q 020548 226 GGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
|.++|+.++. ....+.+.+.
T Consensus 299 ~~~~~~~~~~--~~~~~~~~l~ 318 (357)
T TIGR03539 299 GLYLWATRGE--DAWDTVDRLA 318 (357)
T ss_pred cEEEEEECCC--CHHHHHHHHH
Confidence 6678888753 2344555554
No 124
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.95 E-value=1.7e-26 Score=205.28 Aligned_cols=211 Identities=12% Similarity=0.178 Sum_probs=152.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..+++++ .+ ++|+++.|+|+.+...++ ..|.++..++.+ | +++.+.+ ..+++++++++|||
T Consensus 82 ~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d-~~~~~~~-~~~~~~v~~~~P~N 152 (354)
T PRK06358 82 ELIFNIVKVT-KP-KKVLILAPTFAEYERALK-----AFDAEIEYAELTEETNFAAN-EIVLEEI-KEEIDLVFLCNPNN 152 (354)
T ss_pred HHHHHHHHHh-CC-CcEEEecCChHHHHHHHH-----HcCCeeEEEeCccccCCCcc-HHHHHhh-ccCCCEEEEeCCCC
Confidence 5677777775 44 689999999999988774 257777666542 4 4555556 56799999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEc-Chh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCG-PAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+..+. . ..+..++++|+||.||++|.|+ ||++. +++
T Consensus 153 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~Ri-G~lv~~~~~ 231 (354)
T PRK06358 153 PTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRL-GYGLTSNKN 231 (354)
T ss_pred CCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhh-eeeecCCHH
Confidence 9999986 7788888999999999999997665321 1 1246799999999999899997 99987 467
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+.+...... ...+.+.+..+..++....++...++.+.++++.+.+.|++.+. .+..|
T Consensus 232 ~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~---------------- 292 (354)
T PRK06358 232 LAEKLLQMREP---WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP---------------- 292 (354)
T ss_pred HHHHHHHhCCC---CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC----------------
Confidence 88888776541 22333444444445543334456667778899999999988733 43323
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|+++|+++++. ..|.+.+..
T Consensus 293 ----~g~f~~~~~~~~---~~~~~~l~~ 313 (354)
T PRK06358 293 ----SVNFIFFKLEKP---IDLRKELLK 313 (354)
T ss_pred ----cceEEEEEcCch---HHHHHHHHH
Confidence 356899999743 456666553
No 125
>PRK06855 aminotransferase; Validated
Probab=99.95 E-value=4.4e-26 Score=207.58 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=144.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc-CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ-GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-~~~~~v~~~~~~ 73 (324)
+||..++. ++.|||.|++++|+|+.+...... . .|.++..++. .|++++++++.. ++++++++++||
T Consensus 107 ~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~---~-~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~ 181 (433)
T PRK06855 107 DAIAKIYG-LLRREARVIGPSPAYSTHSSAEAA---H-AGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPD 181 (433)
T ss_pred HHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHH---h-cCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCC
Confidence 56777764 789999999999999987643211 1 3555554432 278999999832 468999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEcC--
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCGP-- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~-- 139 (324)
||||.+++ +++|+++|+++|++||+||+|..+.++. ..+ +..++++|+||.|++||+|+ ||++.+
T Consensus 182 NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi-G~ii~p~~ 260 (433)
T PRK06855 182 NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC-GWIEVYNA 260 (433)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE-EEEEEeCC
Confidence 99999986 5678888999999999999997664321 111 24599999999999899997 999863
Q ss_pred ---hh---HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 140 ---AN---LVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 140 ---~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
+. +++.+..... ...+.+++.+.++..++... .++++..+.+.++++.+.+.|++. +..+..|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~---- 334 (433)
T PRK06855 261 DKDEVFKKYINSILNAKM--IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTN---- 334 (433)
T ss_pred chhhHHHHHHHHHHHhhc--cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCC----
Confidence 22 2233322221 11234455555555555432 234556667899999999999876 33444344
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 335 ---------------gg~~~w~~l~~ 345 (433)
T PRK06855 335 ---------------GAFYMTVVFED 345 (433)
T ss_pred ---------------eeEEEeecccc
Confidence 67899999974
No 126
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.95 E-value=9.8e-27 Score=207.04 Aligned_cols=248 Identities=15% Similarity=0.219 Sum_probs=172.6
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
++|..++++++++| |+|++++|+|+.+...++ ..|.++..++.+ |++.++ .+ +++++|++++||||
T Consensus 88 ~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~-----~~g~~v~~v~~~~~~~~~~~~l~-~~--~~~~li~i~nP~NP 159 (354)
T PRK04635 88 EAIELLIRAFCEPGQDSIACFGPTYGMYAISAE-----TFNVGVKALPLTADYQLPLDYIE-QL--DGAKLVFICNPNNP 159 (354)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEEecCCCCCCCHHHHH-hc--cCCCEEEEeCCCCC
Confidence 57889999999999 999999999999887663 368888877653 567765 33 58999999999999
Q ss_pred cccccChHHHHHHHHhc-CCEEEEcCCCCcCCCCc--c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 76 TLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSP--A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~~~--~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
||.+.+.+++.++++.. ++++|+||+|..+.... . ..+..++++|+||+||.+|.|+ ||+++++++++.+..
T Consensus 160 TG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRl-G~~i~~~~~~~~l~~ 238 (354)
T PRK04635 160 TGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARC-GFTLANEELIEILMR 238 (354)
T ss_pred CCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHH-hhhhCCHHHHHHHHh
Confidence 99999999999888763 69999999996654211 1 1246689999999999899997 999999999988876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 149 LHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
.... ...+.+.+..+..++.. ...+....+++.++++.+.+.|++++ ..+. |. .
T Consensus 239 ~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~-------------------~ 295 (354)
T PRK04635 239 VIAP---YPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EG-------------------N 295 (354)
T ss_pred hcCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CC-------------------C
Confidence 5431 22233333333333332 23345556677888999999999886 3443 43 3
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++++.+++. ..+.+.+.. .|+ .+. +... ...++++|+|++ ..++
T Consensus 296 g~f~~~~~~~~---~~~~~~l~~---~gv-~v~----------~~~~-------------~~~~~~lRis~~----~~e~ 341 (354)
T PRK04635 296 GNYVLAKFDDV---DAVFKALWD---AGI-VAR----------AYKD-------------PRLANCIRFSFS----NRAE 341 (354)
T ss_pred CcEEEEECCCH---HHHHHHHHH---CCE-EEE----------ECCC-------------CCCCCeEEEEeC----CHHH
Confidence 66888888643 344444442 232 111 0000 012478999999 3455
Q ss_pred HHHHHHHHHh
Q 020548 306 WSQFEKALSR 315 (324)
Q Consensus 306 ~~~l~~~l~~ 315 (324)
++.|.++|++
T Consensus 342 ~~~l~~al~~ 351 (354)
T PRK04635 342 TDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHH
Confidence 6677776653
No 127
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.95 E-value=2.7e-26 Score=206.27 Aligned_cols=263 Identities=18% Similarity=0.251 Sum_probs=176.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|++++|+|..+...++ . .|.++.+++. .|++++++.+ +++++++++++|+
T Consensus 94 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~----~-~g~~~~~v~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~ 167 (380)
T PRK06225 94 ESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS----R-FGAEVIEVPIYSEECNYKLTPELVKENM-DENTRLIYLIDPL 167 (380)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----H-hCceEEeeccccccCCccCCHHHHHhhc-CCCceEEEEeCCC
Confidence 57888888899999999999999998876663 2 6777776653 2789999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c-c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P-A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||||.+.+ +++|.++|+++|+++|+||+|..+... + . ..+.++++.|+||++|++|.|+ ||+++++++++.
T Consensus 168 NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Ri-G~i~~~~~l~~~ 246 (380)
T PRK06225 168 NPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRI-GAVVATPDLIEV 246 (380)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCcccee-EEEecCHHHHHH
Confidence 99999865 889999999999999999998544321 1 1 2256789999999999899997 999999999988
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhC-CCce-eCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKL-GLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+...... ..+.+.+.+..+...+..... ++...+.+.++++.+.+.|++. +..+ ..|.
T Consensus 247 ~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------- 307 (380)
T PRK06225 247 VKSIVIN--DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPS----------------- 307 (380)
T ss_pred HHHHHhc--ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCC-----------------
Confidence 8765421 122233333333333333222 3333334566777788888875 3222 1232
Q ss_pred CCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC-
Q 020548 223 YGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG- 300 (324)
Q Consensus 223 ~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~- 300 (324)
.|+++|+.++. ..+..++.+.+.. .|+ .+ .|+..+. ....++++|+|++ ..
T Consensus 308 --~g~~~~~~~~~~~~~~~~l~~~l~~---~gi-~v----------~~g~~~~----------~~~~~~~iR~s~~-~~~ 360 (380)
T PRK06225 308 --HGNMMVIDISEAGIDPEDLVEYLLE---RKI-FV----------RQGTYTS----------KRFGDRYIRVSFS-IPR 360 (380)
T ss_pred --CCeEEEEEcccccCCHHHHHHHHHH---CCE-EE----------cCCcccC----------cCCCCceEEEEeC-CCH
Confidence 57788998863 2345667776653 333 22 2221100 0112479999999 52
Q ss_pred -CHHHHHHHHHHHHHhhh
Q 020548 301 -TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 301 -~~~~~~~~l~~~l~~~~ 317 (324)
+.++.++.|.++++.++
T Consensus 361 e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 361 EQVEVFCEEFPDVVETLR 378 (380)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 34444555555555554
No 128
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.95 E-value=1.1e-26 Score=207.12 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=147.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++++++|||+|++++|+|+.+..... ..|..+..++.+ +++++.+.. .++++|++++|||
T Consensus 93 ~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~~~l~~~~~~~~~~~~~~~~~--~~~k~i~l~~p~N 165 (357)
T PRK14809 93 GALDYLARAMLDPGDTVLVPDPGFAYYGMSAR-----YHHGEVREYPVSKADDFEQTADTVLDAY--DGERIVYLTSPHN 165 (357)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEEecccCcCCCcCHHHHHHhh--cCCcEEEEeCCCC
Confidence 57888899999999999999999987776552 245555554431 456665544 3689999999999
Q ss_pred CcccccChHHHHHHHHhc--CCEEEEcCCCCcCCCCcc------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 75 PTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLSPA------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~~~------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|||.+.+.+++.++++.. ++++|+||+|..+...+. ..+..++++|+||.|+++|+|+ ||+++++++++.+
T Consensus 166 PTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~~~~~~~~~~~~ 244 (357)
T PRK14809 166 PTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRL-GYAVVPEEWADAY 244 (357)
T ss_pred CCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhh-eeeecCHHHHHHH
Confidence 999999887777776543 789999999976643221 1246799999999999999997 9999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...... ...+.+.+..+..++....+++...+.+.++++.+.+.|.... .|. .|
T Consensus 245 ~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~-------------------~g 298 (357)
T PRK14809 245 ARVNTP---FAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAPT----WES-------------------AG 298 (357)
T ss_pred HHhCCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCcc----CCC-------------------CC
Confidence 776431 2233333444444444333455555667777888888875431 233 57
Q ss_pred eEEEEEeCCHHHHHHHHHHhh
Q 020548 227 GLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.++|+++++ ..+|.+.+.
T Consensus 299 ~f~~~~~~~---~~~~~~~l~ 316 (357)
T PRK14809 299 NFVLAEVGD---ASAVAEAAQ 316 (357)
T ss_pred CEEEEECCC---HHHHHHHHH
Confidence 789998863 345666654
No 129
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.95 E-value=4.3e-26 Score=203.43 Aligned_cols=209 Identities=13% Similarity=0.072 Sum_probs=149.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++|..+++++. +||+|++++|+|+.+...++ ..|.++..++.+ +++++++.. .+++++++++
T Consensus 85 ~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~n 156 (360)
T PRK07392 85 ELLTWAGRELA-QLRAVYLITPAFGDYRRALR-----AFGATVKELPLPLDQPSPGLTLRLQTLPPQL--TPNDGLLLNN 156 (360)
T ss_pred HHHHHHHHHhC-CCCeEEEECCCcHHHHHHHH-----HcCCeEEEEecccccCCcccccCHHHHHHhc--cCCCEEEEeC
Confidence 57788887754 68999999999999998884 367777776553 345554433 4679999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||||||.+.+.++|.++++++++ +|+||+|..+..+. . ..+..++++|+||.|+.+|+|+ ||+++++++
T Consensus 157 P~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~~v~~~~~ 234 (360)
T PRK07392 157 PHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRL-GYAIAHPDR 234 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchhe-eeeeCCHHH
Confidence 99999999999999999999985 66799997664321 1 1246799999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... ...+.+.+..+..++..........+.+.++++.+.+.|++.+. .+ .|+
T Consensus 235 ~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~---------------- 294 (360)
T PRK07392 235 LQRWQQWRDP---WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTP-LPS---------------- 294 (360)
T ss_pred HHHHHhhCCC---CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC----------------
Confidence 8888765431 22344444444445543333334445568888999999987633 33 233
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHH
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNY 245 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~ 245 (324)
+|++++++++. +..++.+.
T Consensus 295 ---~~~fl~~~~~~--~~~~l~~~ 313 (360)
T PRK07392 295 ---AANFLLVQSQG--SALQLQEK 313 (360)
T ss_pred ---CCCEEEEEcCC--CHHHHHHH
Confidence 57788888763 34455555
No 130
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.95 E-value=1.4e-26 Score=209.86 Aligned_cols=218 Identities=11% Similarity=0.130 Sum_probs=147.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee-----------EEEecCCCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-----------TTFVDISDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~-----------~~~~~~~d~~~l~~~l~~~~~~~v~~~ 70 (324)
+||..+ ..++.|||+|++++|+|+.+...++ ..|.+ +..++.+.-+.+...+.++++++|+++
T Consensus 110 ~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~ 183 (409)
T PRK07590 110 CDTGNI-LDIFGPDNTIAVTDPVYPVYVDTNV-----MAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLC 183 (409)
T ss_pred HHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH-----HcCCcccccccccccceeEeecccccCCcccCcccCceEEEEe
Confidence 466664 4567899999999999999998884 24554 666654311112222324689999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c-CC----CCcEEEeCCccccccCCCeeEEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-RL----GADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~-~~----~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+||||||.+++ +++|+++|+++|++||+||+|..+..+. . .. +..++++|+||.++.+|+|+ ||++
T Consensus 184 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRi-G~~i 262 (409)
T PRK07590 184 FPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRC-AYTV 262 (409)
T ss_pred CCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCcee-EEEE
Confidence 99999999986 5678888999999999999997654221 1 11 24688999999999899997 9999
Q ss_pred cChhHHHHH-----------HHhhhhhhhc-cCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 138 GPANLVNSM-----------MDLHQGALML-LGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 138 ~~~~~~~~l-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+++++++.+ ..... .... +.+.+.+.++..++.. ..++....+.+.++++.+.+.|++++..+..
T Consensus 263 ~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 341 (409)
T PRK07590 263 VPKELKGKTSDGEGVSLNSLWNRRQ-STKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYG 341 (409)
T ss_pred cCHHHhhhccccchhhhHHHHHHHH-hhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Confidence 999888732 11111 0011 2233444444344432 2234455667788999999999998755543
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
|. +|.++|+++++.....++.+.+
T Consensus 342 ~~-------------------g~~f~wi~~~~~~~~~~~~~~l 365 (409)
T PRK07590 342 GV-------------------NAPYIWVKTPDGMSSWDFFDKL 365 (409)
T ss_pred CC-------------------cceEEEEECCCCCCHHHHHHHH
Confidence 33 5789999997433345555554
No 131
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.95 E-value=4.7e-26 Score=206.22 Aligned_cols=271 Identities=18% Similarity=0.214 Sum_probs=183.0
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++++.++.++ +++||+|++++++|++....+...... .|.+++.++.+ |++++++++ ++++++|+++++
T Consensus 92 ~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~i~~~ 169 (401)
T PRK10874 92 ESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQ-TGAKVVKLPLGADRLPDVDLLPELI-TPRTRILALGQM 169 (401)
T ss_pred HHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHH-hCCEEEEEecCCCCcCCHHHHHHhc-CcCcEEEEEeCC
Confidence 4677777776 479999999999999866555444444 78888887653 789999999 889999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ .+..+....++|++++|+||++|++| .|+++.++++++.+.++.
T Consensus 170 ~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~ 246 (401)
T PRK10874 170 SNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTG---IGVLYGKSELLEAMSPWQ 246 (401)
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCc---cEEEEEchHHHhcCCCee
Confidence 9999999999999999999999999999983 33334445589999999999887665 499999988887765432
Q ss_pred hh-----------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCC
Q 020548 151 QG-----------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKL-GLKVLYPGLE 207 (324)
Q Consensus 151 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~ 207 (324)
.+ ...+..+++.......+...+.. .....++..+.++++.+.|+++ +..+..+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~-- 324 (401)
T PRK10874 247 GGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ-- 324 (401)
T ss_pred cCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC--
Confidence 10 01111223332211111111222 2233444567788889999887 44443222
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
.+++++|.+++. ....+.+.|.. .|+ .++.|..++ . .....+|.
T Consensus 325 -----------------~~~i~~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~~~------~--------~~~~~~g~ 368 (401)
T PRK10874 325 -----------------DSSLLAFDFAGV-HHSDLVTLLAE---YGI-ALRAGQHCA------Q--------PLLAALGV 368 (401)
T ss_pred -----------------CCcEEEEEECCc-CHHHHHHHHHH---CCc-EEeccccch------H--------HHHHHhCC
Confidence 345888888742 23455555543 233 333332211 0 11112233
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
.+.||+|++ ..+++++++.+.++|+.+.
T Consensus 369 -~~~iRiS~~-~~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 369 -TGTLRASFA-PYNTQSDVDALVNAVDRAL 396 (401)
T ss_pred -CCEEEEEec-ccCCHHHHHHHHHHHHHHH
Confidence 378999999 9999999999999887664
No 132
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.95 E-value=4e-26 Score=206.92 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=185.1
Q ss_pred chHHHHHHH----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQ----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|++.++.+ .+++||+|++++++|++....+.....+ .|+++..++.+ |++++++++ ++++++|+++++
T Consensus 96 ~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~l~~~ 173 (406)
T PRK09295 96 EGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPALF-DERTRLLAITHV 173 (406)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCCCCCCHHHHHHhc-CCCcEEEEEecc
Confidence 456666665 4689999999999999876666544444 68888887653 789999999 788999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+.. ..+..+.++|++++|+||++|++| .|+++.++++.+.+.+..
T Consensus 174 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~ 250 (406)
T PRK09295 174 SNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVKEALLQEMPPWE 250 (406)
T ss_pred hhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCC---cEEEEEchHhHhhCCCcc
Confidence 999999999999999999999999999998322 223334589999999999887665 499998888877654321
Q ss_pred hhh------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCC
Q 020548 151 QGA------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGL 206 (324)
Q Consensus 151 ~~~------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~ 206 (324)
.+. .++..+++.......+...++ .++...++..+.++++.+.|++.+ .++..|.
T Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~- 329 (406)
T PRK09295 251 GGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ- 329 (406)
T ss_pred cCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-
Confidence 110 112223333322222222222 233444556778888899988874 3554442
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
.++++++|.++.. ....+...|.. .|+ .++.|..++.. ....++
T Consensus 330 -----------------~~~~iv~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~c~~~--------------~~~~~~ 373 (406)
T PRK09295 330 -----------------NRLGVIAFNLGKH-HAYDVGSFLDN---YGI-AVRTGHHCAMP--------------LMAYYN 373 (406)
T ss_pred -----------------CCceEEEEEECCc-CHHHHHHHHHh---CCe-EEeccccchHH--------------HHHHHC
Confidence 1356889988732 22334444442 332 44444332210 011223
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
. ++.+|+|++ ..+++++++.|.++|+.+.+
T Consensus 374 ~-~~~iRiS~~-~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 V-PAMCRASLA-MYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred C-CCEEEEEcc-CCCCHHHHHHHHHHHHHHHH
Confidence 3 368999999 99999999999999988753
No 133
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.95 E-value=9.7e-26 Score=203.43 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=154.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+||..++++++++||+|++++|+|..+...++ . .|+++.+++.+ |++++++++ ++++++|++++|+||
T Consensus 107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~----~-~g~~v~~v~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NP 180 (394)
T PRK06836 107 GALNVALKAILNPGDEVIVFAPYFVEYRFYVD----N-HGGKLVVVPTDTDTFQPDLDALEAAI-TPKTKAVIINSPNNP 180 (394)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH----H-cCCEEEEEecCCccCcCCHHHHHhhc-CcCceEEEEeCCCCC
Confidence 57888888899999999999999999887764 3 68888887653 689999999 788999999999999
Q ss_pred cccccC---hHHHHHHHHh------cCCEEEEcCCCCcCCCCc------c-CCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 76 TLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP------A-RLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~------~~~~~ivD~~~~~~~~~~------~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||.+.+ +++|+++|++ +|+++|+|++|..+..+. . ..+.+++++|+||.|+.||.|+ ||++++
T Consensus 181 tG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRi-G~~~~~ 259 (394)
T PRK06836 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERI-GYIAVN 259 (394)
T ss_pred CCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceee-EEEecC
Confidence 999986 5677788888 899999999997664321 1 1256899999999999899997 999998
Q ss_pred hhHHHH---HHHhhhhhhhc----cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 140 ANLVNS---MMDLHQGALML----LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 140 ~~~~~~---l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
+++.+. +..... .... ..+.+.+..+...+.. ....+++.++++.+.+.|++++..+..|.
T Consensus 260 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~r~~l~~~L~~~g~~~~~~~------- 327 (394)
T PRK06836 260 PEMEDADDLVAALVF-ANRILGFVNAPALMQRVVAKCLDA----TVDVSIYKRNRDLLYDGLTELGFECVKPQ------- 327 (394)
T ss_pred HHHhhhHHHHHHHHH-HhhccccccCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHhCCCEeecCC-------
Confidence 765432 111111 0001 1222223333333322 12345678888999999998876555444
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|.++|+.++. .+..++.+.+..
T Consensus 328 ------------gg~~~~~~~~~-~~~~~~~~~l~~ 350 (394)
T PRK06836 328 ------------GAFYLFPKSPE-EDDVAFCEKAKK 350 (394)
T ss_pred ------------ceEEEEEeCCC-CCHHHHHHHHHh
Confidence 57788888864 234556666553
No 134
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.95 E-value=5.7e-26 Score=200.12 Aligned_cols=209 Identities=18% Similarity=0.148 Sum_probs=156.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+++..+... +.+| +|++++|+|..+...++ ..|.++..++ |++++++.+ + +++++++++|+||||.+.+
T Consensus 75 ~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~-----~~g~~~~~~~--d~~~l~~~~-~-~~~~v~i~~p~NPtG~~~~ 143 (330)
T TIGR01140 75 EAIYLLPRL-LAPG-RVLVLAPTYSEYARAWR-----AAGHEVVELP--DLDRLPAAL-E-ELDVLVLCNPNNPTGRLIP 143 (330)
T ss_pred HHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHH-----HcCCEEEEeC--CHHHHHhhc-c-cCCEEEEeCCCCCCCCCCC
Confidence 456665544 6777 79999999999988874 3788888887 899999988 4 5789999999999999998
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLSP--A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
+++|+++|+++|+++|+|++|..+.... . ..+.+++++|+||++|++|.|+ ||+++++++++.+......
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~l~~~~~~ 222 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRL-GFVVAHPALLARLREALGP 222 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhh-hheeCCHHHHHHHHhcCCC
Confidence 6677888899999999999996554321 1 1257799999999999899997 9999999999888876541
Q ss_pred hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
...+.+.+.++..++....+.....++++++++.+.+.|++++. ++ .|. .|.++|+
T Consensus 223 ---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-------------------~~~f~~~ 279 (330)
T TIGR01140 223 ---WTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEV-VGG-------------------TALFLLV 279 (330)
T ss_pred ---CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceE-CCC-------------------CCeEEEE
Confidence 22233444444444443334455567779999999999999874 33 233 5778899
Q ss_pred EeCCHHHHHHHHHHhhc
Q 020548 232 DMETEEKANRLMNYLQN 248 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~ 248 (324)
.+++ ...+.+.+..
T Consensus 280 ~~~~---~~~l~~~l~~ 293 (330)
T TIGR01140 280 RTPD---AAALHEALAR 293 (330)
T ss_pred EcCC---HHHHHHHHHH
Confidence 8874 3456666664
No 135
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.95 E-value=6.5e-26 Score=205.10 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=146.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce-----------eEEEecCCCHHHHHHhh-hcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-----------TTTFVDISDHEMVNSAI-VQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~-----------~~~~~~~~d~~~l~~~l-~~~~~~~v~~ 69 (324)
+|+..+ ..++.+||+|++++|+|+.+...++ ..|. ++.+++.+.-+.+...+ ...++++|++
T Consensus 106 ~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l 179 (402)
T TIGR03542 106 CDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNV-----MAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYL 179 (402)
T ss_pred HHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH-----HcCCccccccccccceEEEeecchhhCCCCCccccCCceEEEE
Confidence 466664 4567899999999999999998874 2566 77776543111111111 1257899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---c---CC----CCcEEEeCCccccccCCCeeEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A---RL----GADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~---~~----~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
++||||||.+++ +++|+++|+++|+++|+||+|..+..+. . .. +..++++|+||.||.||+|+ ||+
T Consensus 180 ~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRi-G~~ 258 (402)
T TIGR03542 180 CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRL-GWT 258 (402)
T ss_pred eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcce-EEE
Confidence 999999999987 7788999999999999999997664321 1 11 34688999999999999997 999
Q ss_pred EcChhHH--------HHHHHhhhhhhhc-cCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 137 CGPANLV--------NSMMDLHQGALML-LGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 137 ~~~~~~~--------~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+++++++ +.+..... ... +.+.+.+.++..++... ......++.+.++++.+.+.|++.+..+..|.
T Consensus 259 i~~~~l~~~~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 336 (402)
T TIGR03542 259 VVPKELTYADGHSVIQDWERRQC--TKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVYGGE 336 (402)
T ss_pred EecHHHhhcchhhHHHHHHHHhh--hcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceecCCC
Confidence 9998876 22211111 012 22334444433344332 22444456678889999999998765543232
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|+++|++++...+...+.+.+.
T Consensus 337 -------------------~~~f~~v~l~~~~~~~~l~~~l~ 359 (402)
T TIGR03542 337 -------------------HAPYLWVKTPEGISSWDFFDFLL 359 (402)
T ss_pred -------------------ceeEEEEECCCCCCHHHHHHHHH
Confidence 57799999975333445655543
No 136
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.95 E-value=3.1e-26 Score=204.95 Aligned_cols=217 Identities=20% Similarity=0.262 Sum_probs=161.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcC------CceEE
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQG------RTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~------~~~~v 67 (324)
+++..++..+ .++||+|++++|+|+.+...++ ..|.++..++. .|+++|++.+ ++ ++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v 152 (363)
T PF00155_consen 79 AALFLLLRLLKINPGDTVLVPDPCYPSYIEAAR-----LLGAEVIPVPLDSENDFHLDPEALEEAL-DELPSKGPRPKAV 152 (363)
T ss_dssp HHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHH-----HTTSEEEEEEEEETTTTEETHHHHHHHH-HTSHTTTETEEEE
T ss_pred cchhhhhhcccccccccceecCCcccccccccc-----ccCceeeecccccccccccccccccccc-cccccccccccee
Confidence 3556666666 6799999999999999999884 36777777772 3899999998 44 67899
Q ss_pred EEecCCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCCcc---------CCC-CcEEEeCCccccccCCCeeEE
Q 020548 68 YFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSPA---------RLG-ADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~~~---------~~~-~d~~~~S~sK~~~~~g~r~~G 134 (324)
++++|+||||.+.+.+ +|+++|+++|+++|+||+|..+..... +.+ ..+++.|+||.||.+|.|+ |
T Consensus 153 ~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv-G 231 (363)
T PF00155_consen 153 LICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRV-G 231 (363)
T ss_dssp EEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTE-E
T ss_pred eecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccc-c
Confidence 9999999999998755 555559999999999999976654311 112 4699999999999999997 9
Q ss_pred EEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 135 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
|+++++++.+.++..... ...+++.+..+..++.... ++....+++.++++.+.+.|++.+..+..|.
T Consensus 232 ~i~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~----- 303 (363)
T PF00155_consen 232 YIVAPPELIERLRRFQRS---GLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPE----- 303 (363)
T ss_dssp EEEEEHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHS-----
T ss_pred cccchhhhhhhhhhcccc---ccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeecc-----
Confidence 999999999999877652 2223333333333333322 4556777789999999999999877666443
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.++|..++.. +...+.+.|..
T Consensus 304 --------------~~~~~~~~~~~~-~~~~l~~~L~~ 326 (363)
T PF00155_consen 304 --------------AGFFLWVRLDPN-DAEELAQELLE 326 (363)
T ss_dssp --------------BSSEEEEEESHH-HHHHHHHHHHH
T ss_pred --------------CccEEEEEcccc-hHHHHHHHHHH
Confidence 567778888743 56667777664
No 137
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.95 E-value=5.6e-26 Score=200.52 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=149.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
++|..+. .++++|| |+++.|+|+.+...++ ..|.++..++.++ + .+ ...++++++++||||||.+.+
T Consensus 82 e~i~~l~-~~~~~g~-v~v~~P~y~~y~~~~~-----~~g~~~~~v~~~~-~----~~-~~~~~~v~l~nPnNPTG~~~s 148 (339)
T PRK06959 82 AAIRALP-ALLPRGR-VGIAPLAYSEYAPAFA-----RHGHRVVPLDEAA-D----TL-PAALTHLIVVNPNNPTAERLP 148 (339)
T ss_pred HHHHHHH-HhcCCCe-EEEcCCCcHHHHHHHH-----HCCCEEEeecccc-h----hc-cccCCEEEEeCCCCCCCCCCC
Confidence 4566554 4577877 8899999999998884 3788888877544 2 23 345689999999999999988
Q ss_pred hHHHHHH---HHhcCCEEEEcCCCCcCCCCc--c---CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 IPELSRL---AHDKGVTVVVDNTFSPLVLSP--A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 ~~~i~~l---~~~~~~~~ivD~~~~~~~~~~--~---~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
.+++.++ |++++.++|+||+|..+...+ . +....++++||||.||.+|+|+ ||+++++++++.+......
T Consensus 149 ~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRi-Gy~v~~~~li~~l~~~~~~- 226 (339)
T PRK06959 149 AARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRA-GFVLAAPALLAALRDALGA- 226 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchhe-EEEecCHHHHHHHHHhcCC-
Confidence 6666555 567899999999997664211 1 2245699999999999999997 9999999999999887652
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
+..+.+.+.++..++..........+++.++++++.+.|++.+..+. + .+.++|+.+
T Consensus 227 --~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~--------------------~~~f~~~~~ 283 (339)
T PRK06959 227 --WTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHGFAVH-A--------------------TPLFSWTDD 283 (339)
T ss_pred --CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc-C--------------------cceEEEEeC
Confidence 23344555555555554444555667778899999999999875432 1 255778887
Q ss_pred CCHHHHHHHHHHhhc
Q 020548 234 ETEEKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~~~~~~~~~~l~~ 248 (324)
++ ...+.+.+..
T Consensus 284 ~~---~~~l~~~l~~ 295 (339)
T PRK06959 284 PR---AAALHAALAR 295 (339)
T ss_pred CC---HHHHHHHHHh
Confidence 53 3456666664
No 138
>PRK05839 hypothetical protein; Provisional
Probab=99.95 E-value=1.4e-25 Score=200.87 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=146.5
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++..++ ++||.|+++.|+|+.+...+. ..|.++..++.+ +++..+..+ .++++|++++|||
T Consensus 94 ~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~d~~~~~~--~~~k~v~i~nP~N 166 (374)
T PRK05839 94 EVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI-----ASRAKVLLMPLTKENDFTPSLNEKEL--QEVDLVILNSPNN 166 (374)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH-----hcCCEEEEeecccccCCcCCcchhhh--ccccEEEEeCCCC
Confidence 46666667654 579999999999999998873 378888887653 122212223 4689999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c-c---------CCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-A---------RLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~---------~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+..+ . . ..+..++++|+||.|+.+|.|+ ||++
T Consensus 167 PTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~ii 245 (374)
T PRK05839 167 PTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRS-GFIA 245 (374)
T ss_pred CcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcccee-EEEe
Confidence 9999976 567788899999999999999665321 1 1 1246799999999999999997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+.+...... ...+.+.+.+.++...+....+++...+++.++++.+.+.| +.. .|.
T Consensus 246 ~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~------------ 307 (374)
T PRK05839 246 GDASILKKYKAYRTY-LGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL---GIT--IPP------------ 307 (374)
T ss_pred cCHHHHHHHHHHHhh-cCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc---CCC--CCC------------
Confidence 999999988776541 11233444454444344443445556666777777776655 222 333
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+++++. .++.+++
T Consensus 308 -------gg~fi~~~~~~~---~~~~~~l 326 (374)
T PRK05839 308 -------ATFYVWLPVDND---EEFTKKL 326 (374)
T ss_pred -------eeEEEEEeCCCh---HHHHHHH
Confidence 688999999742 3455554
No 139
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.95 E-value=1.3e-25 Score=203.06 Aligned_cols=272 Identities=19% Similarity=0.175 Sum_probs=183.0
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|++.++.++ +++||+|++++++|++....+...... .|.+++.++.+ |++++++++ ++++++|+++++
T Consensus 89 ~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~ 166 (398)
T TIGR03392 89 ESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQ-TGAKVVKLPIGADLLPDIRQLPELL-TPRTRILALGQM 166 (398)
T ss_pred HHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEECc
Confidence 4677788776 478999999999998865545433334 78888887653 789999999 888999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ .+..+....++|++++|+||.+|++| + |+++.++++++.+.++.
T Consensus 167 ~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~ 243 (398)
T TIGR03392 167 SNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTG--I-GVLYGKTELLEAMPPWQ 243 (398)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCc--e-EEEEEcHHHHhhCCCee
Confidence 9999999999999999999999999999983 22233334579999999999887665 4 99999988887765432
Q ss_pred hhh-----------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCC
Q 020548 151 QGA-----------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLE 207 (324)
Q Consensus 151 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~ 207 (324)
.+. ..+..+++.......+...++ .+....++..+.++++.+.|++.+ ..+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~-- 321 (398)
T TIGR03392 244 GGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP-- 321 (398)
T ss_pred cCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--
Confidence 110 011222333211111111111 233344555778888888888763 3433221
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
.+++++|.+++. ....+.+.|.. .|+ .++.|..++. .....+|.
T Consensus 322 -----------------~~~i~~~~~~~~-~~~~l~~~L~~---~gI-~v~~g~~~~~--------------~~~~~~g~ 365 (398)
T TIGR03392 322 -----------------GSSLLAFDFAGV-HHSDLAALLAE---SGI-ALRAGQHCAQ--------------PLMAALGV 365 (398)
T ss_pred -----------------CCcEEEEEeCCc-CHHHHHHHHHh---CCE-EEecCccchH--------------HHHHHhCC
Confidence 245888888642 23456666553 333 3344432211 01112232
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.||+|++ ..+++++++.+.++|+.+.+
T Consensus 366 -~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 366 -SGTLRASFA-PYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred -CCEEEEEee-ccCCHHHHHHHHHHHHHHHH
Confidence 378999999 89999999999999877643
No 140
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.95 E-value=1.1e-25 Score=203.61 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=135.8
Q ss_pred chHHHHH---HHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C----CHHHHHHhhhc--CCceEEEE
Q 020548 2 SAISSVL---MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S----DHEMVNSAIVQ--GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~---~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~--~~~~~v~~ 69 (324)
+|+..++ .++++|||+|++++|+|+.+...++ ..|.++..++. + |++.+++++++ ++++++++
T Consensus 108 ~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~ 182 (404)
T PTZ00376 108 GALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK-----SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLH 182 (404)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEe
Confidence 3555554 3678999999999999999998884 36778777765 2 78999998842 34677888
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------c----CCCCcEEEeCCccccccCCCeeEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--------A----RLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~----~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++||||||.+.+ +++|+++|++||+++|+||+|..+.++. . ..+..++++|+||.|+++|+|+ |
T Consensus 183 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRv-G 261 (404)
T PTZ00376 183 ACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERI-G 261 (404)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccccc-c
Confidence 999999999975 5677888999999999999997665431 0 1135799999999999999997 9
Q ss_pred EE---EcChhHHHHHHH----hhhhhhhccC-CCCCHHHHHHHhcCcc-------cHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 135 AV---CGPANLVNSMMD----LHQGALMLLG-PTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 135 ~i---~~~~~~~~~l~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
|+ ++++++.+.+.. ... . ...+ +.+.+..+..++.... .+....+++.++++.+.+.|++.+.
T Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 339 (404)
T PTZ00376 262 ALHIVCANKEEAANVLSQLKLIIR-P-MYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGS 339 (404)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98 578876554432 222 1 1222 2334444444444321 1223345678999999999998753
No 141
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.95 E-value=8.8e-26 Score=206.21 Aligned_cols=135 Identities=12% Similarity=0.224 Sum_probs=106.9
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++++ +++|||+|++++|+|+.+....... . .+.++..++. .|++++++++ ++++|+|++
T Consensus 172 ~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~--g-~~~~~v~v~~~~~~~f~~d~~~l~~~~-~~~tkai~l 247 (527)
T PRK09275 172 AAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP--R-YDLEVVHINADEENEWQYPDSELEKLR-DPSIKALFL 247 (527)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc--C-CCeEEEEeecCcccCCCCCHHHHHhhc-CCCCCEEEE
Confidence 466767665 6899999999999999998876311 1 3455555542 2678999988 889999999
Q ss_pred ecCCCCcccccC---hHHHHHHHHh--cCCEEEEcCCCCcCCCCc---cC--CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHD--KGVTVVVDNTFSPLVLSP---AR--LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~--~~~~~ivD~~~~~~~~~~---~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
++|+||||.+.+ +++|+++|++ ++++||+||+|..+.... .. .+..+++.|+||.|+++|+|+ ||++++
T Consensus 248 ~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl-G~i~~~ 326 (527)
T PRK09275 248 VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL-GVIALH 326 (527)
T ss_pred eCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH-hhhhcC
Confidence 999999999986 6778888854 599999999996664321 11 147899999999999999998 999998
Q ss_pred hh
Q 020548 140 AN 141 (324)
Q Consensus 140 ~~ 141 (324)
++
T Consensus 327 ~~ 328 (527)
T PRK09275 327 ED 328 (527)
T ss_pred ch
Confidence 76
No 142
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.94 E-value=7.3e-26 Score=199.58 Aligned_cols=208 Identities=17% Similarity=0.211 Sum_probs=152.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC---HHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD---HEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d---~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+||..++.++ |+|++++|+|+.+...++ ..|.++..++.++ ++.. .+ .+++++++++||||||.
T Consensus 87 ~~i~~~~~~~----d~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~--~~--~~~~~i~i~nP~NPTG~ 153 (335)
T PRK14808 87 EIIYVMMLMF----DRSVFFPPTYSCYRIFAK-----AVGAKFLEVPLTKDLRIPEV--NV--GEGDVVFIPNPNNPTGH 153 (335)
T ss_pred HHHHHHHHHh----CcEEECCCCHHHHHHHHH-----HcCCeEEEecCCCcCCCChh--Hc--cCCCEEEEeCCCCCCCC
Confidence 5677777765 789999999999999884 3788888887641 1111 12 35689999999999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+.+.+++.+++ ++++++|+||+|..|.... . .....++++|+||.|+.+|+|+ ||+++++++++.+......
T Consensus 154 ~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRv-G~~v~~~~~~~~l~~~~~~- 230 (335)
T PRK14808 154 VFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRI-GYVVSSEKFIDAYNRVRLP- 230 (335)
T ss_pred CcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccce-EEEEeCHHHHHHHHHhcCC-
Confidence 99999999998 5799999999996663211 1 2256899999999999899997 9999999999999776541
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
...+.+.+.++..++.......+..+.+.++++.+.+.|++.+..+. |. .|+++|+.+
T Consensus 231 --~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~-------------------~g~f~~~~l 288 (335)
T PRK14808 231 --FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRIT-DS-------------------RGNFVFIFM 288 (335)
T ss_pred --CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC-CC-------------------CCeEEEEeC
Confidence 33344555555445544344555666677788999999998876544 32 477999998
Q ss_pred CCHHHHHHHHHHhhc
Q 020548 234 ETEEKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~~~~~~~~~~l~~ 248 (324)
+.. +...+.+.+..
T Consensus 289 ~~~-~~~~~~~~l~~ 302 (335)
T PRK14808 289 EKE-EKERLLEHLRA 302 (335)
T ss_pred CCc-cHHHHHHHHHH
Confidence 742 23566666664
No 143
>PRK07908 hypothetical protein; Provisional
Probab=99.94 E-value=7.2e-25 Score=194.81 Aligned_cols=247 Identities=17% Similarity=0.208 Sum_probs=165.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+||..+++ +++ +.+++..|+|..+...++ ..|.++..++.+ |++ .+ +++++++++++|+|||
T Consensus 86 ~al~~~~~--l~~-~~viv~~P~y~~~~~~~~-----~~G~~i~~v~~~~~~~~d~~----~l-~~~~~~i~l~np~NPT 152 (349)
T PRK07908 86 EGFALLAR--LRP-RRAAVVHPSFTEPEAALR-----AAGIPVHRVVLDPPFRLDPA----AV-PDDADLVVIGNPTNPT 152 (349)
T ss_pred HHHHHHHh--cCC-CeEEEeCCCChHHHHHHH-----HcCCEEEeeccCcccCcChh----Hh-ccCCCEEEEcCCCCCC
Confidence 46776666 566 456778999999887773 368888777654 333 34 5678999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCC---c---cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLS---P---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~---~---~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.+++.++|.++|++ +.++|+||+|..+... + .+.+..++++|+||.++++|.|+ ||+++++++++.+....
T Consensus 153 G~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~ 230 (349)
T PRK07908 153 SVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRV-GYALGAPDVLARLTRGR 230 (349)
T ss_pred CCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCcccee-eeeecCHHHHHHHHhcC
Confidence 999999999999975 7889999999654321 1 12245788999999999899997 99999999999988765
Q ss_pred hhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 151 QGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.. ...+.+.+.++..++.. ..++....+++.++++.+.+.|++.+..+..|. .|++
T Consensus 231 ~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-------------------~g~~ 288 (349)
T PRK07908 231 AH---WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPA-------------------AAPF 288 (349)
T ss_pred CC---CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCC-------------------CceE
Confidence 41 11222222222223321 233455666778999999999998865555444 5889
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+|+.+++ ...+.+.+.. .|+ .+ .|+..+. +..++++|+|++ .. +.++.
T Consensus 289 ~~~~~~~---~~~~~~~l~~---~gI-~v----------~~g~~f~-----------~~~~~~vRis~~-~~---~~~~~ 336 (349)
T PRK07908 289 VLVRVPD---AELLRKRLRE---RGI-AV----------RRGDTFP-----------GLDPDYLRLAVR-PR---AEVPV 336 (349)
T ss_pred EEEECCc---HHHHHHHHHh---CCE-EE----------EECCCCC-----------CCCCCeEEEEeC-CC---ccHHH
Confidence 9999975 2345555543 232 22 2222110 223589999999 42 23455
Q ss_pred HHHHHHhhh
Q 020548 309 FEKALSRMQ 317 (324)
Q Consensus 309 l~~~l~~~~ 317 (324)
|.++|+.+.
T Consensus 337 l~~al~~~~ 345 (349)
T PRK07908 337 LVQALAEIL 345 (349)
T ss_pred HHHHHHHHH
Confidence 555555543
No 144
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.94 E-value=2.1e-25 Score=203.19 Aligned_cols=279 Identities=19% Similarity=0.226 Sum_probs=187.0
Q ss_pred chHHHHHHH----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQ----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|++.++.+ .+++||+|++++++|++....++..... .|.++..++.+ |++++++.+ ++++++|+++++
T Consensus 105 ~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~ 182 (424)
T PLN02855 105 EAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQK-TGAVLKFVGLTPDEVLDVEQLKELL-SEKTKLVATHHV 182 (424)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHH-cCCEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEeCc
Confidence 356666665 3689999999999999877666555444 68888887653 789999999 789999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ + ...+..+.++|++++|+||++|++| .|+++.++++++.+.++.
T Consensus 183 ~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~p~~ 259 (424)
T PLN02855 183 SNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTG---IGFLWGKSDLLESMPPFL 259 (424)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCc---cEEEEEchhhhhcCCCEe
Confidence 9999999999999999999999999999982 2 2233345578999999999876655 499998888877765432
Q ss_pred hhh-----------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCC
Q 020548 151 QGA-----------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLE 207 (324)
Q Consensus 151 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~ 207 (324)
.+. ..+..+++.....+.+...++ .++...++..+.++++.+.|++.+ .++..|.-
T Consensus 260 ~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~- 338 (424)
T PLN02855 260 GGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKP- 338 (424)
T ss_pred cCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-
Confidence 110 011122222222211111122 244445556788888999998873 45554421
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
..+ ..+++++.|.+++. ....+.+.|.. ++|+ .++.|..++. .. ....|.
T Consensus 339 ~~~------------~~r~~~v~~~~~~~-~~~~v~~~L~~--~~gI-~v~~g~~c~~------~~--------~~~~g~ 388 (424)
T PLN02855 339 SEG------------VGRAALCAFNVEGI-HPTDLSTFLDQ--QHGV-AIRSGHHCAQ------PL--------HRYLGV 388 (424)
T ss_pred ccc------------cCcccEEEEEECCc-CHHHHHHHhcc--cCCE-EEechhhhhH------HH--------HHHhCC
Confidence 000 02467899998742 24456666653 1233 3344433221 00 112343
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.+|+|++ ..+++++++.|.++|+.+.+
T Consensus 389 -~~~iRiS~~-~ynt~~di~~l~~~l~~~~~ 417 (424)
T PLN02855 389 -NASARASLY-FYNTKEEVDAFIHALKDTIA 417 (424)
T ss_pred -CCeEEEEec-cCCCHHHHHHHHHHHHHHHH
Confidence 378999999 99999999999998877653
No 145
>PLN02368 alanine transaminase
Probab=99.94 E-value=1.4e-25 Score=201.48 Aligned_cols=196 Identities=12% Similarity=0.082 Sum_probs=147.6
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc-----CCceEEE
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ-----GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-----~~~~~v~ 68 (324)
+|+..++++++ +|||+|++++|+|+.+...++ ..|.++..++. .|++++++++.. .++++++
T Consensus 141 ~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~ 215 (407)
T PLN02368 141 KGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS-----LLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMV 215 (407)
T ss_pred HHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 47788888887 799999999999999998884 36777766653 278999998831 1789999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc--------C-------CCCcEEEeCCcccc-c
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA--------R-------LGADVVVHSISKFI-S 126 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~--------~-------~~~d~~~~S~sK~~-~ 126 (324)
+++||||||.+.+ +++|+++|+++|++||+||+|..+.++ +. . .+..++++|+||.| +
T Consensus 216 l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~ 295 (407)
T PLN02368 216 IINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWG 295 (407)
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCccccc
Confidence 9999999999976 567788899999999999999665431 11 1 12579999999998 7
Q ss_pred cCCCeeEEEEE---cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----c----H---HHHHHHHHHHHHHHHH
Q 020548 127 GGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----H----L---GLRMKEHCHRALIFAR 192 (324)
Q Consensus 127 ~~g~r~~G~i~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~---~~~~~~~~~~~~~l~~ 192 (324)
++|+|+ ||++ +++++++.+..... ...+.+.+.+.++..++.... . . ....+.++++++.+.+
T Consensus 296 ~~GlRi-Gy~i~~~~~~~li~~~~~~~~--~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~ 372 (407)
T PLN02368 296 ECGQRG-GYFEMTNIPPKTVEEIYKVAS--IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTD 372 (407)
T ss_pred CCccce-EEEEEeCCCHHHHHHHHHHhc--ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899997 9998 58889998887643 123445566666655554321 1 2 2345677999999999
Q ss_pred HHHhC-CCceeCCC
Q 020548 193 RMKKL-GLKVLYPG 205 (324)
Q Consensus 193 ~L~~~-~~~~~~p~ 205 (324)
.|++. +..+..|.
T Consensus 373 ~L~~~~g~~~~~P~ 386 (407)
T PLN02368 373 GFNSCKNVVCNFTE 386 (407)
T ss_pred HHhCCCCeEeCCCC
Confidence 99997 44565565
No 146
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.94 E-value=4.3e-25 Score=201.43 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=106.6
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++.+ +++|||+|++++|+|+.+....... . .|.+++.++. .|.++++++. ++++
T Consensus 166 ~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~--~-~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~-~~~~ 241 (521)
T TIGR03801 166 AAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP--R-YDFEVVRIKADEMTEDGTHTWQYPDKELEKLR-DPSI 241 (521)
T ss_pred HHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh--c-CCcEEEEeecccccccccccCCCCHHHHHHhc-CCCC
Confidence 466666665 7899999999999999999876321 1 3566555543 2568888877 7899
Q ss_pred eEEEEecCCCCcccccC---hHHHHHHHHhc--CCEEEEcCCCCcCCCCc---cCC--CCcEEEeCCccccccCCCeeEE
Q 020548 65 KVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSP---ARL--GADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~--~~~~ivD~~~~~~~~~~---~~~--~~d~~~~S~sK~~~~~g~r~~G 134 (324)
|++++++|+||||.+.+ +++|+++|+++ +++||+||+|..+.... ... +..+++.|+||.|+++|+|+ |
T Consensus 242 kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~Rl-G 320 (521)
T TIGR03801 242 KALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRL-G 320 (521)
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhh-h
Confidence 99999999999999986 66778889886 89999999997664321 111 46799999999999999998 9
Q ss_pred EEEcChh
Q 020548 135 AVCGPAN 141 (324)
Q Consensus 135 ~i~~~~~ 141 (324)
|++.+++
T Consensus 321 ~i~~~~~ 327 (521)
T TIGR03801 321 TIALHKD 327 (521)
T ss_pred hhhcCch
Confidence 9988764
No 147
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.94 E-value=7.3e-25 Score=196.04 Aligned_cols=221 Identities=15% Similarity=0.178 Sum_probs=153.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc------CCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~------~~~~~v~ 68 (324)
+|+..++.+++++||+|+++.+.|.+....+ +..|.++..++.+ |++++++++.. +++++|+
T Consensus 77 ~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~-----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~ 151 (370)
T TIGR02539 77 EGKFAVMHALCKEGDWVVLDGLAHYTSYVAA-----ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLAL 151 (370)
T ss_pred HHHHHHHHHhhCCCCEEEECCcccHHHHHHH-----HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEE
Confidence 4678888999999999999999977766554 2368888877764 89999998832 3688999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
+++|+||+|...|+++|.++|+++|+++++|++|+.. ..+....++|++++|+||++++ ++++ ||+++++++++.+
T Consensus 152 ~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~-~g~~-G~l~~~~~~i~~l 229 (370)
T TIGR02539 152 LTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAA-SGPC-GVLGMSEEWEDIV 229 (370)
T ss_pred EECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccC-CCCE-EEEEECHHHHhhh
Confidence 9999999999999999999999999999999999432 2233345789999999999985 6676 9999999999988
Q ss_pred HHhhhhhhh----ccCCCC---CHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCcee--CCCCCCCchhHHHHH
Q 020548 147 MDLHQGALM----LLGPTM---NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL--YPGLEDHPHHELLKS 217 (324)
Q Consensus 147 ~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~p~~~~~~~~~~~~~ 217 (324)
.....++.. ..+.+. ....+...+..........++..++++++.+.|++.|+++. .|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~~~~~~s------------ 297 (370)
T TIGR02539 230 LRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIGFIQLGQKPK------------ 297 (370)
T ss_pred cccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCCC------------
Confidence 765542110 111111 11111112211111112233445556789999999987653 233
Q ss_pred HhccCCCcceEEEEEeCCH--------HHHHHHHHHhhc
Q 020548 218 MANKEYGFGGLLCLDMETE--------EKANRLMNYLQN 248 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~ 248 (324)
.++++.++++.. .....+.+.|..
T Consensus 298 -------~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e 329 (370)
T TIGR02539 298 -------EHDLVKFETPGFHEIAQKHKRRGYFLYEELKK 329 (370)
T ss_pred -------cCceEEEECCchhHHhhhhccccHHHHHHHHh
Confidence 466888877531 123456677664
No 148
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.94 E-value=1.4e-25 Score=198.13 Aligned_cols=182 Identities=14% Similarity=0.160 Sum_probs=135.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..++..+ +||+|+++.|+|+.+...++ ..|.++..++.+ |++++++.+ ++++++++++|+|||
T Consensus 83 ~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~v~~~~P~NPt 153 (337)
T PRK03967 83 ELISYLVKLF--EGKHIVITPPTFGMYSFYAK-----LNGIPVIDVPLKEDFTIDGERIAEKA--KNASAVFICSPNNPT 153 (337)
T ss_pred HHHHHHHHHh--CCCeEEEeCCChHHHHHHHH-----HcCCeEEEeecCCCCCcCHHHHHHhc--cCCCEEEEeCCCCCC
Confidence 4566665554 79999999999998876653 267887777653 678887754 578899999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.++|.++++ +++++|+||+|..+.... . .....++++|+||.|+.+|.|+ ||+++++++++.+.....
T Consensus 154 G~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRi-G~iv~~~~~i~~~~~~~~ 231 (337)
T PRK03967 154 GNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRA-GYAIANEEIIDALYRIKP 231 (337)
T ss_pred CCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhh-eeeecCHHHHHHHHhhcC
Confidence 99999999999995 699999999997664211 1 1246799999999999899997 999999999998887665
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
. ...+.+.+.++..++...++..+..+...++++.+.+.|.+.
T Consensus 232 ~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 274 (337)
T PRK03967 232 P---FSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY 274 (337)
T ss_pred C---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 222334444444444443444455556677778888888764
No 149
>PLN02231 alanine transaminase
Probab=99.94 E-value=1e-24 Score=201.65 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=142.8
Q ss_pred chHHHHHHHccC-CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEE
Q 020548 2 SAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~ 68 (324)
+||..++++++. +||.|+++.|+|+.+...++ ..|.++..++.+ |+++|+++++. .++++++
T Consensus 202 ~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~-----~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv 276 (534)
T PLN02231 202 PAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA-----LHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV 276 (534)
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCChhHHHHHH-----HcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 578889998884 79999999999999998884 256666666432 78999998832 1689999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc----C------C---C-CcEEEeCCcccc-cc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA----R------L---G-ADVVVHSISKFI-SG 127 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~----~------~---~-~d~~~~S~sK~~-~~ 127 (324)
+++|+||||.+.+ +++|+++|+++|++||+||+|..+.++ +. . . + ..++++|+||.+ +.
T Consensus 277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~ 356 (534)
T PLN02231 277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGE 356 (534)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccC
Confidence 9999999999975 678899999999999999999766442 10 0 0 1 358899999965 78
Q ss_pred CCCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHH-------HHHHHHHHHHHHHHHH
Q 020548 128 GADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLG-------LRMKEHCHRALIFARR 193 (324)
Q Consensus 128 ~g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~l~~~ 193 (324)
+|+|+ ||++. ++++.+.+.+... . ..+.+.+.+..+..++... ..++ ...+.+.++++.+.+.
T Consensus 357 pGlRi-Gy~~~~~~~~~l~~~l~k~~~-~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~ 433 (534)
T PLN02231 357 CGKRG-GYMEVTGFTSDVREQIYKVAS-V-NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDA 433 (534)
T ss_pred Cccce-EEEEEecCCHHHHHHHHHHHh-h-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99975 6788888876644 1 2333444444444444321 1222 2245678999999999
Q ss_pred HHhC-CCceeCCC
Q 020548 194 MKKL-GLKVLYPG 205 (324)
Q Consensus 194 L~~~-~~~~~~p~ 205 (324)
|++. +..+..|.
T Consensus 434 L~~~~gi~~~~p~ 446 (534)
T PLN02231 434 LNSLEGVTCNKAE 446 (534)
T ss_pred HhcCCCceecCCC
Confidence 9987 45665454
No 150
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.94 E-value=1.3e-24 Score=194.28 Aligned_cols=257 Identities=16% Similarity=0.148 Sum_probs=177.1
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~ 79 (324)
++..++.+++++||+|++++|+|+.+...++ ..|.++..++..|++++++.++. .++++|++++++|++|..
T Consensus 88 ~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~ 162 (360)
T TIGR00858 88 ANVGVISALVGKGDLILSDALNHASLIDGCR-----LSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDI 162 (360)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCC
Confidence 3445667778999999999999999987773 36778888877799999998843 257899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCC--Cc--------c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVL--SP--------A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~--------~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
.++++|.++|+++|+++|+||+|+.+.. .. . ..+.+++++|+||+|+++ |||+++++++.+.+..
T Consensus 163 ~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----gG~~~~~~~~~~~~~~ 238 (360)
T TIGR00858 163 APLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY----GAYVAGSQALIDYLIN 238 (360)
T ss_pred cCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc----CcEEEcCHHHHHHHHH
Confidence 9999999999999999999999843221 10 1 126789999999999875 4899999998888765
Q ss_pred hhhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 149 LHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
.........+..+.+..+. ..++.........+++.++++++.+.|++.+.++. |. .++
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-------------------~~~ 298 (360)
T TIGR00858 239 RARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALGFTLM-PS-------------------CTP 298 (360)
T ss_pred hCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCccC-CC-------------------CCC
Confidence 4331100111222222121 22222222334567789999999999998775443 22 467
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHH
Q 020548 228 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 307 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~ 307 (324)
++|+.++......+|.+.+.. .|+.. ..+.. +.. ...++++|+|++ ..++.++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~---~gI~v-~~~~~------~~~--------------~~~~~~iRis~~-~~~~~~~i~ 353 (360)
T TIGR00858 299 IVPVIIGDNASALALAEELQQ---QGIFV-GAIRP------PTV--------------PAGTSRLRLTLS-AAHTPGDID 353 (360)
T ss_pred EEEEEeCCHHHHHHHHHHHHH---CCeeE-eeeCC------CCC--------------CCCCceEEEEEc-CCCCHHHHH
Confidence 899999755556678777764 34311 11100 000 012368999999 877777777
Q ss_pred HHHHHH
Q 020548 308 QFEKAL 313 (324)
Q Consensus 308 ~l~~~l 313 (324)
.+.++|
T Consensus 354 ~~l~~l 359 (360)
T TIGR00858 354 RLAEAL 359 (360)
T ss_pred HHHHhh
Confidence 766655
No 151
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=187.61 Aligned_cols=268 Identities=18% Similarity=0.171 Sum_probs=196.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
.|.+|+++.-+|++....++.+ .+ .|.++.+++++ |+++|++++ +++|.+|.+...||.+|.++|+++|.++
T Consensus 90 ~~~HIIts~iEH~aVl~~~~~L-e~-~g~~Vtyl~V~~~G~v~~e~L~~al-~~~T~LVSim~aNnE~G~IQpI~ei~~i 166 (386)
T COG1104 90 KGKHIITSAIEHPAVLNTCRYL-ER-QGFEVTYLPVDSNGLVDLEQLEEAL-RPDTILVSIMHANNETGTIQPIAEIGEI 166 (386)
T ss_pred CCCeEEEcccccHHHHHHHHHH-Hh-cCCeEEEeCCCCCCeEcHHHHHHhc-CCCceEEEEEecccCeeecccHHHHHHH
Confidence 5789999999999999999755 44 69999999886 899999999 8899999999999999999999999999
Q ss_pred HHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH--HHHHHhhhhhhhccCCCCCHH
Q 020548 89 AHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV--NSMMDLHQGALMLLGPTMNPK 164 (324)
Q Consensus 89 ~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~--~~l~~~~~~~~~~~~~~~~~~ 164 (324)
|+++|+++++|.+| +....+...+++|++..|.||.+|+.| .|+++.++... ..+....+..+...|....+.
T Consensus 167 ~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~ 243 (386)
T COG1104 167 CKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPG 243 (386)
T ss_pred HHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccHHH
Confidence 99999999999998 445566667789999999999998877 68887655432 222222221233444444433
Q ss_pred HHHH--Hhc-CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCC-CCCCchhHHHHHHhccCCCcceEEEEEeCCHHHH
Q 020548 165 VAFE--LSE-RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 239 (324)
Q Consensus 165 ~~~~--~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 239 (324)
.+.. +++ ....++....+....++++.+.|.+. +.-..... .+ ...+++.|.+++ ...
T Consensus 244 Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~----------------rlP~~~~~~f~g-v~g 306 (386)
T COG1104 244 IVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEP----------------RLPNILNFSFPG-VEG 306 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccc----------------CCCCeEEEEeCC-CcH
Confidence 3222 111 23445667777889999999999986 44222122 11 234588899985 346
Q ss_pred HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 240 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 240 ~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.++-.|.. .| +++|.|..|+. ....++++..++|.+ .+.||||+| ..+++++++.+.+++..
T Consensus 307 E~ll~~L~~---~g-I~vStGSACsS--------~~~~pShVL~AmG~~~e~a~~siR~S~g-~~tt~eei~~~~~~l~~ 373 (386)
T COG1104 307 ESLLLALDL---AG-IAVSTGSACSS--------GSLEPSHVLRAMGISEELAHGSIRFSLG-RFTTEEEIDAAAEALKE 373 (386)
T ss_pred HHHHHhccc---cC-eEEeccccccC--------CCCCccHHHHHcCCChHHhCccEEEEcC-CCCCHHHHHHHHHHHHH
Confidence 667667764 33 47788877543 223345677788885 378999999 99999999888888776
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+-
T Consensus 374 ~i 375 (386)
T COG1104 374 II 375 (386)
T ss_pred HH
Confidence 64
No 152
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.94 E-value=2.3e-24 Score=194.85 Aligned_cols=263 Identities=13% Similarity=0.187 Sum_probs=179.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---C--CceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---G--RTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~--~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|++++|+|+++...++. .+.+...+...|++++++++.+ . ++++|++++++|||
T Consensus 109 ~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~-----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~t 183 (393)
T TIGR01822 109 DANGGLFETLLGAEDAIISDALNHASIIDGVRL-----CKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMD 183 (393)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccHHHHHHHHh-----cCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCC
Confidence 467788888899999999999999999887732 3333334445689999998832 2 78899999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC-CcCC-CC------ccC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF-SPLV-LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~~------~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|.+.|+++|+++|+++|+++|+|++| .++. .. ... .++|++++|+||++++ +| +||+++++++.+.+
T Consensus 184 G~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g--~r-~G~~~~~~~~~~~l 260 (393)
T TIGR01822 184 GVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG--AS-GGFTTARKEVVELL 260 (393)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC--CC-cEEEEeCHHHHHHH
Confidence 99999999999999999999999998 3332 11 111 2578999999999864 57 49999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
....... ..+++..+..... .+......+...+++.++++++.+.|++.++.+. +.
T Consensus 261 ~~~~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------ 319 (393)
T TIGR01822 261 RQRSRPY--LFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAAGFDIK-PA------------------ 319 (393)
T ss_pred HHhCccc--eecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC------------------
Confidence 7643211 2222222222111 2222222345567778999999999988766543 21
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.++++.+.+.+......|.+.|.. .|+ .++ +.. .|.. +.....+|+|++ ..+++
T Consensus 320 -~~~~~~i~~~~~~~~~~l~~~L~~---~gI-~v~-~~~-----~~~~--------------~~~~~~iRis~~-~~~t~ 373 (393)
T TIGR01822 320 -DHPIIPVMLYDAVLAQRFARRLLE---EGI-YVT-GFF-----YPVV--------------PKGQARIRVQIS-AAHTE 373 (393)
T ss_pred -CCCEEEEEeCCHHHHHHHHHHHHH---CCe-eEe-eeC-----CCCC--------------CCCCceEEEEEC-CCCCH
Confidence 234677777655556778877764 243 211 110 1100 111356999999 88888
Q ss_pred HHHHHHHHHHHhhhhc
Q 020548 304 QRWSQFEKALSRMQDS 319 (324)
Q Consensus 304 ~~~~~l~~~l~~~~~~ 319 (324)
++++.+.++|+.+.+.
T Consensus 374 edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 374 EQLDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777543
No 153
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.94 E-value=9e-25 Score=198.74 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=150.2
Q ss_pred CchHHHHHHHccC-----CCCEEEE-cCCCchhHHHHHhhhcC-cccceeEEEecC------CCHHHHHHhhhcCCceEE
Q 020548 1 MSAISSVLMQLCS-----SGGHVVA-ARTLYGGTHALLTHFFP-RACNITTTFVDI------SDHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 1 ~~ai~~~~~~~~~-----~gd~vl~-~~p~y~~~~~~~~~~~~-~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v 67 (324)
++||..+++++++ +||.|++ .+|+|+.+......... ...+..+..++. .|+++++ + .++++++
T Consensus 107 ~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~i 183 (416)
T PRK09440 107 QSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--I-DEDTGAI 183 (416)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--c-CCCceEE
Confidence 3578888888885 6899999 79999998875421100 001222222221 3677776 3 5678999
Q ss_pred EEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 68 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 68 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++++||||||.+++ +++|+++|+++++++|+||+|..+... +...+..++++|+||+ +++|+|+ ||++
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRi-G~~i 261 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRC-GIVI 261 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceE-EEEe
Confidence 99999999999986 668888999999999999999543211 1112567999999996 8999997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH---HH-HHHHHHHHHHHHHHHHHhC----CCceeCCCCCCC
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEHCHRALIFARRMKKL----GLKVLYPGLEDH 209 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~ 209 (324)
+++++++.+...... ...+.+.+.+.++..++...... .. ..+.+.++++.+.+.|++. +..+..|.
T Consensus 262 ~~~~l~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~---- 336 (416)
T PRK09440 262 ADEEIIEALSNMNGI-ISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPE---- 336 (416)
T ss_pred CCHHHHHHHHHHHHH-hccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCC----
Confidence 999999988876651 11233445555555555443322 12 2344677778888888764 22333343
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
+|.++|+.++. ......+.+.+.
T Consensus 337 ---------------gg~fiw~~~~~~~~~~~~~~~~l~ 360 (416)
T PRK09440 337 ---------------GAIFLWLWFKDLPITTEELYQRLK 360 (416)
T ss_pred ---------------CceEEEEECCCCCCCHHHHHHHHH
Confidence 68899999874 234456666655
No 154
>PLN02672 methionine S-methyltransferase
Probab=99.94 E-value=8.9e-25 Score=211.33 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=142.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+++..+++++++|||+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ ++ +.+++++++|+
T Consensus 765 elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~-----~~Ga~vv~Vpl~~e~gf~lD~d~Le~al-~~~~~~~I~L~nPn 838 (1082)
T PLN02672 765 ALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAK-----FLKANFRRIPTKSSDGFKLTAKTLASTL-ETVKKPWVYISGPT 838 (1082)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHh-ccCCCCEEEEECcC
Confidence 56778888999999999999999999999884 367777777653 678999988 54 45688999996
Q ss_pred -CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c-----CC------CCcEEEeCCccccccCCCe
Q 020548 74 -NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A-----RL------GADVVVHSISKFISGGADI 131 (324)
Q Consensus 74 -nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~-----~~------~~d~~~~S~sK~~~~~g~r 131 (324)
||||.+++ +++|+++|++||++||+||+|.++.++. . .. .+.++++|+||.++++|+|
T Consensus 839 hNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLR 918 (1082)
T PLN02672 839 INPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHE 918 (1082)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHH
Confidence 99999975 6688888999999999999997554321 0 00 1468999999999999999
Q ss_pred eEEEEEcCh-hHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-----Cc---ccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 132 IAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-----RI---PHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 132 ~~G~i~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
+ ||+++++ ++++.+..... . .......+..+..++. .. ..+....+.+.++++++.+.|++.+..+.
T Consensus 919 I-GylIap~~eLi~~l~~~~~-~--s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~ 994 (1082)
T PLN02672 919 F-GFLALNDSVLIDAFHSAPG-L--SRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVL 994 (1082)
T ss_pred h-eeEEeCCHHHHHHHHHhhh-h--cCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEe
Confidence 7 9999864 58888876543 1 1122223333322221 11 12344556679999999999999877665
Q ss_pred CCC
Q 020548 203 YPG 205 (324)
Q Consensus 203 ~p~ 205 (324)
.|.
T Consensus 995 ~Pe 997 (1082)
T PLN02672 995 EPQ 997 (1082)
T ss_pred cCC
Confidence 454
No 155
>PRK07179 hypothetical protein; Provisional
Probab=99.94 E-value=3.8e-24 Score=193.99 Aligned_cols=263 Identities=15% Similarity=0.163 Sum_probs=184.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||.|+++.+.|.+....+. ..|.++..++..|++++++++++.++++|++++++||||.+.|
T Consensus 125 ~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p 199 (407)
T PRK07179 125 AANVGLLQTIADPNTPVYIDFFAHMSLWEGVR-----AAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP 199 (407)
T ss_pred HHHHHHHHHhCCCCCEEEEECCcCHHHHHHHH-----HCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCcccc
Confidence 47788888999999999999999988876652 2577777777779999999993335889999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC--CC------ccC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV--LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~--~~------~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+++|.++|+++|+++|+||+|+... .. ... .++|+++.|+||++++ + +|++++++++++.+.....
T Consensus 200 l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~---~-~G~l~~~~~~~~~~~~~~~ 275 (407)
T PRK07179 200 LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG---R-AGIITCPRELAEYVPFVSY 275 (407)
T ss_pred HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc---c-CeEEEeCHHHHHHHHHhCc
Confidence 9999999999999999999994211 11 111 1458999999999975 3 4999999888877764432
Q ss_pred hhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 152 GALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.. ..++++.+..++. .+........+.+++.++++++.+.|++.++++. . .+++
T Consensus 276 ~~--~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~--~-------------------~~~i 332 (407)
T PRK07179 276 PA--IFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSELGYNIR--S-------------------ESQI 332 (407)
T ss_pred Ce--eeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC--C-------------------CCCE
Confidence 11 1223322222221 2222233345667789999999999998865433 1 3568
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++.......+.+.+.. .|+.. +.++.|.. ....+.+|+|++ ...++++++.
T Consensus 333 ~~l~~~~~~~~~~~~~~L~~---~GI~~-------~~~~~p~~--------------~~~~~~lRis~~-~~~t~edi~~ 387 (407)
T PRK07179 333 IALETGSERNTEVLRDALEE---RNVFG-------AVFCAPAT--------------PKNRNLIRLSLN-ADLTASDLDR 387 (407)
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCceE-------eeecCCCC--------------CCCCceEEEEEC-CCCCHHHHHH
Confidence 88888754456667777664 34321 11122221 112478999999 8888888999
Q ss_pred HHHHHHhhhhcCC
Q 020548 309 FEKALSRMQDSGV 321 (324)
Q Consensus 309 l~~~l~~~~~~~~ 321 (324)
+.++|+.+.++.+
T Consensus 388 ~~~~l~~~~~~~~ 400 (407)
T PRK07179 388 VLEVCREARDEVD 400 (407)
T ss_pred HHHHHHHHHHhhC
Confidence 9998888765544
No 156
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=3.8e-24 Score=179.76 Aligned_cols=243 Identities=15% Similarity=0.207 Sum_probs=174.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++.+||..|+++.|+|+-|.... ...|+++++++.. |++.++.++ +++|.++++.+|+|
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a-----~~~~lEVR~ydlLPe~~weIDL~~veal~-DENT~AivviNP~N 210 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTRA-----IYSGLEVRYYDLLPEKDWEIDLDGVEALA-DENTVAIVVINPNN 210 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHhh-----hhcCceeEeecccCcccceechHHHHHhh-ccCeeEEEEeCCCC
Confidence 6899999999999999999999999988766 3378999998863 899999988 99999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--cc----CC---CCcEEEeCCccccccCCCeeEEEEEcC---
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--PA----RL---GADVVVHSISKFISGGADIIAGAVCGP--- 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~~----~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~--- 139 (324)
|+|.+.+ +++|+++|+++++.+|.||+|.++.+. |. .+ -..+.++|.||-+-.||||+ ||++..
T Consensus 211 PcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRl-GWi~~hD~~ 289 (447)
T KOG0259|consen 211 PCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRL-GWIALHDPR 289 (447)
T ss_pred CCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCcee-eeEEEeccc
Confidence 9999975 789999999999999999999766432 21 11 35789999999888999998 999542
Q ss_pred -----hhHHHHHHHhhhhhhhccCCC-CCHHHHHHHhc-Cccc-HHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCC
Q 020548 140 -----ANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE-RIPH-LGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDH 209 (324)
Q Consensus 140 -----~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~ 209 (324)
...++.+....+ ...++. ..|.+.-..+. ..+. +.....-.+.+.+...++|++.+- . ...|+
T Consensus 290 gvf~~~~~~q~~~~~~~---~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPe---- 362 (447)
T KOG0259|consen 290 GVFRDTKVVQGIKNFLD---IIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPE---- 362 (447)
T ss_pred ccccchHHHHHHHHHHh---ccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCC----
Confidence 233344444433 233333 22222222232 2222 455666679999999999999864 3 22243
Q ss_pred chhHHHHHHhccCCCcceEEEEEeC-----CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHh
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDME-----TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 284 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~-----~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
+..+.++.+. +.++-..|+..|- ..+++++-|+.-+
T Consensus 363 ---------------g~mylmv~l~~s~~~~~~dD~dFc~kL~-------------~Eesv~~LPG~af----------- 403 (447)
T KOG0259|consen 363 ---------------GCMYLMVKLNLSLFPDIEDDVDFCQKLA-------------REESVICLPGQAF----------- 403 (447)
T ss_pred ---------------cceEEEeccchhhhccccccHHHHHHHh-------------hhcceEEeccccc-----------
Confidence 4556677665 2233445555544 2367777777644
Q ss_pred cCCCCCeEEEEeccCC
Q 020548 285 AGISAGLVRMSVGYLG 300 (324)
Q Consensus 285 ~~~~~~~iR~s~g~~~ 300 (324)
|. ++|+|++++ .+
T Consensus 404 -~~-~nw~Ri~i~-~~ 416 (447)
T KOG0259|consen 404 -GL-KNWLRIVIT-VE 416 (447)
T ss_pred -cC-CCeEEEEEc-cC
Confidence 33 599999999 55
No 157
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.94 E-value=1.9e-24 Score=195.22 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=144.0
Q ss_pred CchHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc--CCceEEEE
Q 020548 1 MSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYF 69 (324)
Q Consensus 1 ~~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~~v~~ 69 (324)
++|+..+++.+ ++|||+|++++|+|+.+...++ ..|.+++.++. .|++++++.+.+ .+++++++
T Consensus 104 ~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~ 178 (396)
T PRK09257 104 TGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE-----AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLH 178 (396)
T ss_pred cHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH-----HcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEe
Confidence 46788887655 5899999999999999998884 36777776653 278999888732 34566677
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----------c-CCCCcEEEeCCccccccCCCeeEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----------A-RLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----------~-~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|..+..+. . ..+..++++|+||.|+++|+|+ ||
T Consensus 179 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRi-G~ 257 (396)
T PRK09257 179 GCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERV-GA 257 (396)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccc-ee
Confidence 999999999975 6688889999999999999997665321 1 1135799999999999999997 99
Q ss_pred EE---cChhHH----HHHHHhhhhhhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC--
Q 020548 136 VC---GPANLV----NSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL-- 199 (324)
Q Consensus 136 i~---~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~-- 199 (324)
++ .+++.. ..+..... ......+.+.+..+..++... ..+....+++.++++.+.+.|++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~ 336 (396)
T PRK09257 258 LSVVAEDAEEADRVLSQLKATIR-TNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSR 336 (396)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhh-hhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 97 244433 33333222 101112233333333344332 12334566679999999999998752
Q ss_pred --ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 200 --KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 200 --~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+..|. +|.++|+.++
T Consensus 337 ~~~~~~p~-------------------gg~~~w~~l~ 354 (396)
T PRK09257 337 DFDFIARQ-------------------RGMFSYSGLT 354 (396)
T ss_pred Cccccccc-------------------ceEEEecCCC
Confidence 333333 6888888885
No 158
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.94 E-value=1.1e-24 Score=197.40 Aligned_cols=276 Identities=19% Similarity=0.230 Sum_probs=184.9
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++ +++||+|++++++|++....+...... .|.+++.++.+ |++++++.+ ++++++|+++++
T Consensus 91 ~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~l~~~i-~~~~~lv~~~~~ 168 (403)
T TIGR01979 91 ESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAER-TGATLKFIPLDDDGTLDLDDLEKLL-TEKTKLVAITHV 168 (403)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHh-cCcEEEEEecCCCCCCCHHHHHHHh-ccCCeEEEEEcc
Confidence 3566666653 578999999999999877666554444 78888887653 789999999 889999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-cC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PL-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ +. ..+..+.++|++++|+||++|++| .|+++.++++.+.+.+..
T Consensus 169 ~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~g~l~~~~~~~~~~~~~~ 245 (403)
T TIGR01979 169 SNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTG---IGVLYGKEELLEQMPPFL 245 (403)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCC---ceEEEEchHHHhcCCCee
Confidence 9999999999999999999999999999983 22 233345589999999999987665 499988888777664321
Q ss_pred hhh-----------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCC
Q 020548 151 QGA-----------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLE 207 (324)
Q Consensus 151 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~ 207 (324)
.+. ..+..+++.......+...++ ..+...++..+.++++.+.|++.+ .++..|.-+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~ 325 (403)
T TIGR01979 246 GGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDA 325 (403)
T ss_pred cCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc
Confidence 100 001112333222222211111 133445666888888999898874 466544311
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
. ..++++.|.+++. ....+.+.+.. .|+ .++.|..++. .....++.
T Consensus 326 ~---------------~~~~~v~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~~~~--------------~~~~~~~~ 371 (403)
T TIGR01979 326 E---------------DRGGIISFNVEGV-HPHDVGTILDE---EGI-AVRSGHHCAQ--------------PLMRRFGV 371 (403)
T ss_pred c---------------ccCceEEEEeCCc-CHHHHHHHHhh---CCE-EEcchhhhhH--------------HHHHHhCC
Confidence 0 1466888988642 23455555553 343 3333322110 00111232
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.+|+|+| ..+++++++.+.++|+.+.+
T Consensus 372 -~~~iRiS~~-~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 372 -PATCRASFY-IYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred -CCEEEEEec-cCCCHHHHHHHHHHHHHHHH
Confidence 478999999 88999999999999877653
No 159
>PRK08637 hypothetical protein; Provisional
Probab=99.94 E-value=4.1e-24 Score=192.50 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=147.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--C----CHHHHHHhhh---cCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--S----DHEMVNSAIV---QGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~----d~~~l~~~l~---~~~~~~v~~~~~ 72 (324)
+|+..++.++++|||+|++++|+|+.+...+.. ..|.++..++. + |++++++.++ .+..+++++++|
T Consensus 80 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~----~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P 155 (388)
T PRK08637 80 HGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNT----RRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFP 155 (388)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH----hcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCC
Confidence 578888889999999999999999999876521 15777776654 2 7899998883 245567778889
Q ss_pred CCCcccccC---hHHHHHHHHh-----cCCEEEEcCCCCcCCCCc------c----CC-CCc--EEEeCCccccccCCCe
Q 020548 73 SNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPLVLSP------A----RL-GAD--VVVHSISKFISGGADI 131 (324)
Q Consensus 73 ~nptG~~~~---~~~i~~l~~~-----~~~~~ivD~~~~~~~~~~------~----~~-~~d--~~~~S~sK~~~~~g~r 131 (324)
|||||.+.+ +++|+++|++ ++++||+||+|..+.++. . +. +.. ++++|+||.+++||.|
T Consensus 156 ~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlR 235 (388)
T PRK08637 156 NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFR 235 (388)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccc
Confidence 999999976 5566776664 899999999997664321 0 11 232 3456999999999999
Q ss_pred eEEEEEc------ChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhCC-
Q 020548 132 IAGAVCG------PANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKLG- 198 (324)
Q Consensus 132 ~~G~i~~------~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~- 198 (324)
+ ||++. ++++.+.+...... ......+.+.+.++..++...... ...+..++++++.+.+.|++.+
T Consensus 236 l-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~ 314 (388)
T PRK08637 236 V-GFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKY 314 (388)
T ss_pred e-EEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7 99974 36777777542110 011234455555555555432221 2233346777777888887763
Q ss_pred ---CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 199 ---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 199 ---~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
..+..|. +|.++|+++++ .+..+|.+.+.
T Consensus 315 ~~~~~~~~~~-------------------~g~~~~~~l~~-~~~~~l~~~l~ 346 (388)
T PRK08637 315 DDAWQAYPFN-------------------SGYFMCLKLKG-VDAEELRVHLL 346 (388)
T ss_pred CCCccccccc-------------------ceEEEEecCCh-HHHHHHHHHHh
Confidence 2322222 67888999973 34567777763
No 160
>PRK08354 putative aminotransferase; Provisional
Probab=99.93 E-value=3.1e-24 Score=187.53 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=108.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+||..++. ++.+||+|++++|+|+.+...++ ..|.++..++ .|++.+++.+ + +++++++++||||||.+.+
T Consensus 65 ~al~~~~~-~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~~~-~d~~~l~~~~-~-~~~~vi~~~P~NPTG~~~~ 135 (311)
T PRK08354 65 EALYLIGI-LALRDRKVIIPRHTYGEYERVAR-----FFAARIIKGP-NDPEKLEELV-E-RNSVVFFCNPNNPDGKFYN 135 (311)
T ss_pred HHHHHHHH-hhCCCCeEEEeCCCcHHHHHHHH-----HcCCEEeecC-CCHHHHHHhh-c-CCCEEEEecCCCCCCCccC
Confidence 46666664 34589999999999999998884 3778877764 4789998887 4 5678999999999999976
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+++|+++|+++|+++|+||+|.++..+. ...+..++++|+||.|+++|.|+ ||+++ +.+.++....
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRi-G~~v~---~~~~l~~~~~ 206 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRV-GYVKG---FEEAFRSVRM 206 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcccee-eeeee---hHHHHHHcCC
Confidence 5677778899999999999997775432 22457899999999999999997 99998 4555655443
No 161
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.93 E-value=1.3e-23 Score=186.89 Aligned_cols=260 Identities=17% Similarity=0.185 Sum_probs=177.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc----CCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ----GRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----~~~~~v~~~~~~nptG 77 (324)
+++..++++++++||+|++++|+|+++...++ . .|.++.+++..|.+++++++.+ ++++++++++++||||
T Consensus 72 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~----~-~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG 146 (349)
T cd06454 72 AANDGVLSTLAGKGDLIISDSLNHASIIDGIR----L-SGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146 (349)
T ss_pred HHHHHHHHHhcCCCCEEEEehhhhHHHHHHHH----H-cCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCC
Confidence 35666677788999999999999999877663 2 6888887777788889888843 4678999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCC-C--------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLV-L--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~--------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
...|+++|+++|+++|+++|+|++|+ +.. . .....++|++++|+||+++++ +|+++.++++.+.+.
T Consensus 147 ~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~i~~~~~~~~~~~ 222 (349)
T cd06454 147 DIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV----GGYIAGSKELIDYLR 222 (349)
T ss_pred CccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhccc----CCEEECCHHHHHHHH
Confidence 99999999999999999999999984 222 1 112347899999999999875 489999988888876
Q ss_pred HhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ..+.+......+. .+..........+++.++++.+.+.|++.+..+..+.
T Consensus 223 ~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------------------- 281 (349)
T cd06454 223 SYARGF--IFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELGFPVGGSP------------------- 281 (349)
T ss_pred Hhchhh--hccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------
Confidence 544311 1222233222222 2222222345667788999999999998765433221
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.+.++++.+++.....++.+.+.. .|+.. +.+++ +. .....+.+|++++ ..++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~L~~---~gI~~-~~~~~------~~--------------~~~~~~~iRi~~~-~~~~~~ 336 (349)
T cd06454 282 SHIIPPLIGDDPAKAVAFSDALLE---RGIYV-QAIRY------PT--------------VPRGTARLRISLS-AAHTKE 336 (349)
T ss_pred CCcEEEEeCCChHHHHHHHHHHHh---CCceE-EEecC------Cc--------------cCCCCCeEEEEEe-CCCCHH
Confidence 233455555433456677777764 24311 11111 00 0111478999999 887888
Q ss_pred HHHHHHHHHHhh
Q 020548 305 RWSQFEKALSRM 316 (324)
Q Consensus 305 ~~~~l~~~l~~~ 316 (324)
.++.+.++|+.+
T Consensus 337 ~i~~~~~~l~~~ 348 (349)
T cd06454 337 DIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHHh
Confidence 888888777653
No 162
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.93 E-value=6.3e-24 Score=190.90 Aligned_cols=277 Identities=18% Similarity=0.238 Sum_probs=181.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|+++.++|+++...+...... .|.+++.++.+ |++++++++ ++++++|++++++|||
T Consensus 73 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~n~t 150 (376)
T TIGR01977 73 TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQ-IGVEITIVKCDNEGLISPERIKRAI-KTNTKLIVVSHASNVT 150 (376)
T ss_pred HHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHhc-CCCCeEEEEECCCCCc
Confidence 4778888888899999999999999887766544433 58888877653 799999999 7889999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh--
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-- 152 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-- 152 (324)
|.+.|+++|.++|+++|+++|+|++++ + ...+....++|++++|++|++++|.+. |++++.++..++.+......
T Consensus 151 G~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~-g~l~~~~~~~~~~~~~~~~~~~ 229 (376)
T TIGR01977 151 GTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGT-GGLYIREGIKLKPLKSGGTGSH 229 (376)
T ss_pred cccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCc-eEEEEcCCcCcCceecCCCccc
Confidence 999999999999999999999999982 2 223444568999999999999876544 34445554322211110000
Q ss_pred h----------hhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHH
Q 020548 153 A----------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 153 ~----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~ 216 (324)
. .++..+++.......+...++. .+...++..++++++.+.|++.+. .+..|.-+
T Consensus 230 ~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--------- 300 (376)
T TIGR01977 230 SALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADP--------- 300 (376)
T ss_pred cccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc---------
Confidence 0 0011122222222221112222 334556678888999999987653 54433211
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc-CCCCCeEEEE
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA-GISAGLVRMS 295 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iR~s 295 (324)
...+++++|.+++. +...+.+.+.. .+|+ .++.|..++...++ .. ....+.+|+|
T Consensus 301 ------~~~~~~v~~~~~~~-~~~~~~~~L~~--~~gi-~v~~g~~~~~~~~~--------------~~g~~~~~~iRis 356 (376)
T TIGR01977 301 ------ANRVGVVSFTVEGI-DSEEVADILDE--KFDI-ATRTGLHCAPLAHK--------------TIGTFATGTIRLS 356 (376)
T ss_pred ------cccCCeEEEEECCC-CHHHHHHHHhc--cCCE-EEEcccccchHHHH--------------HhCCCCCCeEEEe
Confidence 02466888988742 35566666653 1233 33334332221111 11 1235789999
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q 020548 296 VGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~ 315 (324)
++ ..+++++++.+.++|+.
T Consensus 357 ~~-~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 357 LG-YFNTEEEIEKLLEALSE 375 (376)
T ss_pred cC-CCCCHHHHHHHHHHHhh
Confidence 99 99999999999988865
No 163
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.93 E-value=6.2e-24 Score=190.73 Aligned_cols=269 Identities=20% Similarity=0.252 Sum_probs=181.6
Q ss_pred chHHHHHHHccC---CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++.. +||+|++++++|++....+...... .|.+++.++.+ |++++++.+ ++++++|++++++
T Consensus 72 ~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~ 149 (373)
T cd06453 72 EAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAER-TGAKLKVVPVDDDGQLDLEALEKLL-TERTKLVAVTHVS 149 (373)
T ss_pred HHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhh-cCcEEEEeecCCCCCcCHHHHHHHh-cCCceEEEEeCcc
Confidence 467778888876 8999999999999876555444333 68888888754 899999999 7799999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-cCC-CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|++++ +.. .+..+.++|++++|++|+++++| +|+++.++++++.+.+...
T Consensus 150 ~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g---~g~~~~~~~~~~~~~~~~~ 226 (373)
T cd06453 150 NVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTG---IGVLYGKEELLEEMPPYGG 226 (373)
T ss_pred cccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCC---cEEEEEchHHhhcCCCeec
Confidence 999999999999999999999999999983 222 23334589999999999998744 4999999888877765432
Q ss_pred hhh-----------------hccCCCCCHHHHHH---HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCC
Q 020548 152 GAL-----------------MLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLED 208 (324)
Q Consensus 152 ~~~-----------------~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~ 208 (324)
+.. .+..+++....... .+..+ ..++...++..++++++.+.|++.+ .++..+.
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--- 303 (373)
T cd06453 227 GGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA--- 303 (373)
T ss_pred CCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc---
Confidence 100 01112222211111 11111 2344556667888899999998885 3544221
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
...+++++|.+++. +..++.+.+.. .|+ .++.|..++. ......+.
T Consensus 304 --------------~~~~~~~~~~~~~~-~~~~i~~~l~~---~gi-~i~~g~~~~~--------------~~~~~~~~- 349 (373)
T cd06453 304 --------------EDRAGVVSFNLEGI-HPHDVATILDQ---YGI-AVRAGHHCAQ--------------PLMRRLGV- 349 (373)
T ss_pred --------------cccCCeEEEEECCc-CHHHHHHHHHH---CCE-EeccCccchh--------------HHHHHhCC-
Confidence 02456889988742 34566666653 232 2222221110 00111222
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
++.||+|+| ..+++++++.+.++|
T Consensus 350 ~~~iRis~~-~~~t~~di~~~~~~l 373 (373)
T cd06453 350 PGTVRASFG-LYNTEEEIDALVEAL 373 (373)
T ss_pred CCeEEEEec-CCCCHHHHHHHHhhC
Confidence 478999999 999998888887764
No 164
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.93 E-value=3.3e-23 Score=186.84 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=176.1
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC--CceEEEEecCCCCccccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVA 80 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~ 80 (324)
++..++..++++||+|++++|+|+.+...++ ..|.++..++..|++++++.+... +++++++++++|++|...
T Consensus 111 ~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~ 185 (385)
T PRK05958 111 ANLAVLTALAGKGDLIVSDKLNHASLIDGAR-----LSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLA 185 (385)
T ss_pred HHHHHHHHhCCCCCEEEEeCccCHHHHHHHH-----hcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcC
Confidence 3445667778999999999999999887763 367788888878999999988332 467777888999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcC-CC-C--------ccC-CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPL-VL-S--------PAR-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~-~~-~--------~~~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
++++|+++|+++|+++|+||+|+.. .. . ... .+.++++.|+||+++++ |||+++++++.+.+...
T Consensus 186 ~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~ 261 (385)
T PRK05958 186 PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS----GAAVLGSETLIDYLINR 261 (385)
T ss_pred CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC----CcEEEcCHHHHHHHHHh
Confidence 9999999999999999999999432 11 1 011 23568999999999875 48999998888877644
Q ss_pred hhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 150 HQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
........+.++.+..+. ..+..........+++.++++++.+.|++.+.++..| .|++
T Consensus 262 ~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--------------------~~~~ 321 (385)
T PRK05958 262 ARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALGFQLMDS--------------------QSAI 321 (385)
T ss_pred CccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC--------------------CCCE
Confidence 321111122222222222 1222222224456677889999999999877553322 4668
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.+++.....++.+.+.. .|+ .+..+. .+. ....++++|+|++ ...++++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~---~gI-~v~~~~------~~~--------------~~~~~~~lRis~~-~~~~~~~i~~ 376 (385)
T PRK05958 322 QPLIVGDNERALALAAALQE---QGF-WVGAIR------PPT--------------VPAGTSRLRITLT-AAHTEADIDR 376 (385)
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCc-eEeccc------CCC--------------CCCCCceEEEEec-CCCCHHHHHH
Confidence 89998765566778888764 343 111110 000 0112368999999 7777777777
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
+.++|+.
T Consensus 377 ~l~~l~~ 383 (385)
T PRK05958 377 LLEALAE 383 (385)
T ss_pred HHHHHHh
Confidence 7777654
No 165
>PLN02397 aspartate transaminase
Probab=99.93 E-value=2.1e-23 Score=189.32 Aligned_cols=204 Identities=11% Similarity=0.106 Sum_probs=141.0
Q ss_pred HHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc--CCceEEEEecCCCC
Q 020548 5 SSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFESISNP 75 (324)
Q Consensus 5 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~~v~~~~~~np 75 (324)
...+..++.|||+|++++|+|+.+...++ ..|.++..++. .|++.+++.+.+ ++++++++++||||
T Consensus 132 ~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NP 206 (423)
T PLN02397 132 GAEFLARFYPGSTIYIPNPTWGNHHNIFR-----DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNP 206 (423)
T ss_pred HHHHHHHhCCCCEEEEeCCCchhHHHHHH-----HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 33444455799999999999999998884 36777766643 278888887732 56788888999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c-C---C-CCcEEEeCCccccccCCCeeEEEEE---
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A-R---L-GADVVVHSISKFISGGADIIAGAVC--- 137 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~-~---~-~~d~~~~S~sK~~~~~g~r~~G~i~--- 137 (324)
||.+.+ +++|+++|+++|+++|+||+|.++.++. . . . ...++++|+||.|+++|+|+ ||++
T Consensus 207 TG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv-G~~v~~~ 285 (423)
T PLN02397 207 TGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV-GALSVVC 285 (423)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc-eEEEEEe
Confidence 999975 5678888999999999999997775421 0 0 1 24689999999999999997 9984
Q ss_pred cChhHHHHHH----HhhhhhhhccCCCCCHHHHHHHhcCcc----c---HHHHHHHHHHHHHHHHHHHHhCC----Ccee
Q 020548 138 GPANLVNSMM----DLHQGALMLLGPTMNPKVAFELSERIP----H---LGLRMKEHCHRALIFARRMKKLG----LKVL 202 (324)
Q Consensus 138 ~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~L~~~~----~~~~ 202 (324)
.++++++.+. .... ....+.+.+.+..+..++.... + +....+++.++++.+.+.|++++ ..+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~ 364 (423)
T PLN02397 286 KSADVAVRVKSQLKLIAR-PMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHI 364 (423)
T ss_pred CCHHHHHHHHHHHHHHHh-cccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 4666555433 3222 0011222233433333444321 1 34455678999999999999986 3333
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|. +|.++|+.++
T Consensus 365 ~p~-------------------gg~fl~~~l~ 377 (423)
T PLN02397 365 TKQ-------------------IGMFSFTGLN 377 (423)
T ss_pred cCC-------------------ceEEEecCCC
Confidence 343 6778888885
No 166
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.92 E-value=1.8e-23 Score=186.50 Aligned_cols=264 Identities=15% Similarity=0.137 Sum_probs=177.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH--HHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~--~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.++|.+. ...++ . .|.++..++.+ |++++++.+ ++ ++++|++++++
T Consensus 61 ~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~~~~~l~~~i-~~~~~~~v~i~~~~ 134 (356)
T cd06451 61 GAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAE----R-YGADVDVVEKPWGEAVSPEEIAEAL-EQHDIKAVTLTHNE 134 (356)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHH----H-hCCCeEEeecCCCCCCCHHHHHHHH-hccCCCEEEEeccC
Confidence 467888888999999999999887763 23331 2 67777777542 799999999 55 89999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH--h
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--L 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~--~ 149 (324)
||+|.+.|+++|.++|+++|+++++|++|+ ....+....+.|+++.|+||++++|. . +|+++.++++++.+.. .
T Consensus 135 ~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~-g-~G~l~~~~~~~~~~~~~~~ 212 (356)
T cd06451 135 TSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPP-G-LGPIAFSERALERIKKKTK 212 (356)
T ss_pred CCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCC-C-cceeEECHHHHHHHHhcCC
Confidence 999999999999999999999999999872 22234445578999999999998753 3 3999999888887763 0
Q ss_pred hhhh-------------hhccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 150 HQGA-------------LMLLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 150 ~~~~-------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
..+. .....+++...... .++..+ ..++...++..++++++.+.|++.+..+..+. ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~-- 288 (356)
T cd06451 213 PKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKP--EL-- 288 (356)
T ss_pred CCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCc--cc--
Confidence 0000 00122222222111 111111 22445566678889999999998877554321 00
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
..+.++++.+++..+...+.+.+.. +.|+.. +.| .. ...+++
T Consensus 289 ------------~~~~~~~~~~~~~~~~~~~~~~L~~--~~gI~~-~~g----------~~-------------~~~~~~ 330 (356)
T cd06451 289 ------------RSPTVTAVLVPEGVDGDEVVRRLMK--RYNIEI-AGG----------LG-------------PTAGKV 330 (356)
T ss_pred ------------CCCceEEEECCCCCCHHHHHHHHHH--hCCEEE-ecc----------cc-------------cccCCE
Confidence 1234556666643345667777664 113311 111 10 012368
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|+|++ ..+++++++.+.++|+.+
T Consensus 331 iRis~~-~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 331 FRIGHM-GEATREDVLGVLSALEEA 354 (356)
T ss_pred EEEecC-CCCCHHHHHHHHHHHHHH
Confidence 999999 888888899998888764
No 167
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.92 E-value=6.7e-23 Score=185.58 Aligned_cols=261 Identities=13% Similarity=0.170 Sum_probs=176.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---C--CceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---G--RTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~--~~~~v~~~~~~npt 76 (324)
+++..+++++++|||+|++++|+|+++...+. ..+.++..++..|++++++.+.. + ++++|++++++|++
T Consensus 113 ~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~ 187 (397)
T PRK06939 113 DANGGLFETLLGKEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMD 187 (397)
T ss_pred HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH-----hcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCC
Confidence 36777888889999999999999999887773 25666667766789999888732 3 78888888899999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC-cCCCC----c---cCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS----P---ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~----~---~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|...++++|.++|+++|+++|+||+|. ++... . ... ++|++++|+||++++ +| +||+++++++++.+
T Consensus 188 G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g--~r-~G~v~~~~~~~~~l 264 (397)
T PRK06939 188 GDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGG--AS-GGYTAGRKEVIDWL 264 (397)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCc--cC-ceEEEeCHHHHHHH
Confidence 999999999999999999999999993 33211 1 112 468999999999953 47 49999999999888
Q ss_pred HHhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
....... ..+++..+..++. .+..+.......+++.++++.+.+.|++.+..+..|
T Consensus 265 ~~~~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~------------------- 323 (397)
T PRK06939 265 RQRSRPY--LFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAGFTLGPG------------------- 323 (397)
T ss_pred HHhCccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC-------------------
Confidence 7643211 1222323222221 122222223556677899999999999876543322
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.++++.+.+++..+..+|.+.+.. .|+ .+. +.. .+.. +...+++|++++ ...++
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~L~~---~gI-~v~-~~~-----~~~~--------------~~~~~~iRi~~~-~~~~~ 377 (397)
T PRK06939 324 -EHPIIPVMLGDAKLAQEFADRLLE---EGV-YVI-GFS-----FPVV--------------PKGQARIRTQMS-AAHTK 377 (397)
T ss_pred -CCCEEEEEECCHHHHHHHHHHHHH---CCc-eEe-eeC-----CCCC--------------CCCCceEEEEEC-CCCCH
Confidence 244666666654456778777764 243 211 100 0100 112368999998 75566
Q ss_pred HHHHHHHHHHHhhh
Q 020548 304 QRWSQFEKALSRMQ 317 (324)
Q Consensus 304 ~~~~~l~~~l~~~~ 317 (324)
+.++.+.+.|+.+-
T Consensus 378 ~~i~~~l~~L~~~~ 391 (397)
T PRK06939 378 EQLDRAIDAFEKVG 391 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666553
No 168
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.92 E-value=1.5e-23 Score=189.70 Aligned_cols=261 Identities=15% Similarity=0.152 Sum_probs=170.8
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
++|||+|++++++|.+....+...... .|.++..++.+ |++++++++ ++++++|++++|+||||.+.|+++|
T Consensus 101 ~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~lv~i~~~~n~tG~~~~~~~i 178 (397)
T TIGR01976 101 WGPGDEVIVTRLDHEANISPWLQAAER-AGAKVKWARVDEATGELHPDDLASLL-SPRTRLVAVTAASNTLGSIVDLAAI 178 (397)
T ss_pred CCCCCEEEEcCCchHhHHHHHHHHHHh-cCCEEEEEeccccCCCcCHHHHHHhc-CCCceEEEEeCCCCCCCccCCHHHH
Confidence 689999999999998877655433334 68888777653 689999999 7789999999999999999999999
Q ss_pred HHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh------hhcc
Q 020548 86 SRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA------LMLL 157 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~------~~~~ 157 (324)
.++|+++|+++++|+++. + ...+..+.++|++++|+||++|+ ++ |+++.++++++.+.+..... ..+.
T Consensus 179 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (397)
T TIGR01976 179 TELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP---HM-GILWGRPELLMNLPPYKLTFSYDTGPERFE 254 (397)
T ss_pred HHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCC---ce-EEEEEcHHHHhhCCCccccCccCCCcchhc
Confidence 999999999999999972 2 22233446899999999999853 44 99999988887776432210 1112
Q ss_pred CCCCCHHHHHH------HhcCcc-------------cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 158 GPTMNPKVAFE------LSERIP-------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 158 ~~~~~~~~~~~------~~~~~~-------------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
.+++....... .+.... .++...++..+.++++.+.|++.+ .++..|..+.
T Consensus 255 ~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~--------- 325 (397)
T TIGR01976 255 LGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLA--------- 325 (397)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc---------
Confidence 22333211111 111111 122333445677888888888876 4555442100
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC--CCCeEEEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMS 295 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iR~s 295 (324)
..++++.+.+++. ....+.++|.. .|+ .++.+..+. +...+..+. ..+.+|+|
T Consensus 326 ------~~~~~~~~~~~~~-~~~~l~~~L~~---~gI-~v~~~~~~~--------------~~~~~~~~~~~~~~~iRis 380 (397)
T TIGR01976 326 ------ARVPTVSFTVHGL-PPQRVVRRLAD---QGI-DAWAGHFYA--------------VRLLRRLGLNDEGGVVRVG 380 (397)
T ss_pred ------CCCceEEEEeCCc-CHHHHHHHHHH---CCe-EEEeCccch--------------HHHHHHhCCCCCCCeEEEE
Confidence 1466888887642 34566666664 343 222222111 001112233 24689999
Q ss_pred eccCCCHHHHHHHHHHHH
Q 020548 296 VGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l 313 (324)
++ ..+++++++.+.++|
T Consensus 381 ~~-~~~t~~di~~l~~~l 397 (397)
T TIGR01976 381 LA-HYNTAEEVDRLLEAL 397 (397)
T ss_pred ee-ccCCHHHHHHHHHhC
Confidence 99 888888888887654
No 169
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.92 E-value=4.9e-23 Score=183.13 Aligned_cols=258 Identities=24% Similarity=0.273 Sum_probs=176.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CH--HHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DH--EMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~--~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++.++||+|+++.++|.++...++ ..|.++..++.+ +. +.++... ++++++|++++++|
T Consensus 70 ~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~i~~~~~ 143 (350)
T cd00609 70 EALSLLLRALLNPGDEVLVPDPTYPGYEAAAR-----LAGAEVVPVPLDEEGGFLLDLELLEAAK-TPKTKLLYLNNPNN 143 (350)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEEecccccCCccCHHHHHhhc-CccceEEEEECCCC
Confidence 57788888888999999999999999998884 266777777654 22 5555555 78899999999999
Q ss_pred CcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC---------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh-h
Q 020548 75 PTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS---------PARLGADVVVHSISKFISGGADIIAGAVCGPA-N 141 (324)
Q Consensus 75 ptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~---------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~ 141 (324)
|||.+.|.+ +|.++|+++|+++|+|++|+++... ....+.|++++|++|+++.+|.++ |+++.++ +
T Consensus 144 ~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~-G~i~~~~~~ 222 (350)
T cd00609 144 PTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRI-GYLIAPPEE 222 (350)
T ss_pred CCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccce-EEEecCHHH
Confidence 999998755 4558999999999999998554311 223368999999999998678886 9999888 7
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~ 219 (324)
+.+.+..... ......+...+..+..++... .......+++.++++++.+.|++.+... ..|
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------------- 286 (350)
T cd00609 223 LLERLKKLLP-YTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKP--------------- 286 (350)
T ss_pred HHHHHHHHHH-hcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC---------------
Confidence 8888877655 111222333333333344333 3455666677999999999999987632 222
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.+|.++++.+++......+.+.+.. .|+ .+..+.. + ....+.++|++++ .
T Consensus 287 ----~~g~~~~~~~~~~~~~~~~~~~l~~---~gi-~i~~~~~----------~-----------~~~~~~~iRi~~~-~ 336 (350)
T cd00609 287 ----SGGFFLWLDLPEGDDEEFLERLLLE---AGV-VVRPGSA----------F-----------GEGGEGFVRLSFA-T 336 (350)
T ss_pred ----CccEEEEEecCCCChHHHHHHHHHh---CCE-EEecccc----------c-----------ccCCCCeEEEEee-C
Confidence 2577888888754334445555553 232 1111111 0 0013578999999 6
Q ss_pred CCHHHHHHHHHHHHH
Q 020548 300 GTLDQRWSQFEKALS 314 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~ 314 (324)
. .++++.+.++++
T Consensus 337 ~--~~~i~~~~~al~ 349 (350)
T cd00609 337 P--EEELEEALERLA 349 (350)
T ss_pred C--HHHHHHHHHHhh
Confidence 6 555666666553
No 170
>PLN02483 serine palmitoyltransferase
Probab=99.92 E-value=1.1e-22 Score=187.11 Aligned_cols=261 Identities=13% Similarity=0.165 Sum_probs=176.6
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc------CCc-----e-EEEEe
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ------GRT-----K-VLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~-----~-~v~~~ 70 (324)
+...++.++++|||.|++++|+|+++...+ +..|++++.++.+|.+++++.+++ +++ + +|+++
T Consensus 173 an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~-----~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve 247 (489)
T PLN02483 173 TNSTIIPALIGKGGLIISDSLNHNSIVNGA-----RGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247 (489)
T ss_pred HHHHHHHHhCCCCCEEEEcchhhHHHHHHH-----HHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEEC
Confidence 344567778999999999999999998877 337889988888888888877631 222 4 55567
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc--CCC---------CccCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVL---------SPARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~---------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
...|++|.+.++++|+++|+++|+++|+||+|+. +.. .....++|++++|+||+||+. |||++++
T Consensus 248 ~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~----GG~i~~~ 323 (489)
T PLN02483 248 GIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC----GGYIAGS 323 (489)
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC----ceEEEcC
Confidence 7889999999999999999999999999999842 111 011125799999999999886 5999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHH---HHHhc---C---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVA---FELSE---R---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~---~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
+++++.++...... ..+..+.+..+ ...+. . .....++.+++.++++.+.+.|++.++.+..+.
T Consensus 324 ~~li~~l~~~~~~~--~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~----- 396 (489)
T PLN02483 324 KELIQYLKRTCPAH--LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDN----- 396 (489)
T ss_pred HHHHHHHHHhCccc--cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccCCC-----
Confidence 99999988754311 12222221111 11121 1 122345667789999999999999876544222
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.++++++.+....+...|.+.+.. .|+..+. .+ .|.. ....+
T Consensus 397 --------------~sp~~~l~l~~~~~~~~~~~~Ll~---~GI~v~~-~~------fp~~--------------p~~~~ 438 (489)
T PLN02483 397 --------------DSPVMPIMLYNPAKIPAFSRECLK---QNVAVVV-VG------FPAT--------------PLLLA 438 (489)
T ss_pred --------------CCCEEEEEECCHHHHHHHHHHHHH---CCcEEee-eC------CCCC--------------CCCCc
Confidence 356778877655566677777664 3432211 10 1111 11236
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.+|++++ ...++++++.+.++|+++.+
T Consensus 439 ~vRi~is-a~~t~edId~~l~~L~~~~~ 465 (489)
T PLN02483 439 RARICIS-ASHSREDLIKALEVISEVGD 465 (489)
T ss_pred eEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 8999999 76666666666666665543
No 171
>PRK02948 cysteine desulfurase; Provisional
Probab=99.92 E-value=2.1e-23 Score=187.78 Aligned_cols=281 Identities=15% Similarity=0.123 Sum_probs=180.1
Q ss_pred hHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
++..++.+++ ++||+|+++..+|+++...+... .. .|.++..++.+ |++++++++ ++++++|++++++
T Consensus 72 a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~~~ 148 (381)
T PRK02948 72 SNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSL-ES-QGYTVTEIPVDKSGLIRLVDLERAI-TPDTVLASIQHAN 148 (381)
T ss_pred HHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHH-Hh-CCCEEEEEeeCCCCCCCHHHHHHhc-CCCCEEEEEECCc
Confidence 4555665554 67899999999999887776433 23 68888777653 799999999 7789999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH-HHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~-~~~l~~~~ 150 (324)
||||.+.|+++|.++|+++|+++++|+++ +....+..+.++|+++.|+||++|++| .|+++.++++ +..+....
T Consensus 149 n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~ 225 (381)
T PRK02948 149 SEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKG---VGAVYINPQVRWKPVFPGT 225 (381)
T ss_pred CCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCc---EEEEEEcCCCCCCCcccCC
Confidence 99999999999999999999999999876 222334445689999999999998776 4888776654 11111100
Q ss_pred hhhhhccCCCCCHH---HHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 151 QGALMLLGPTMNPK---VAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 151 ~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.....+..+++... ++..++... +.++...++..++++++.+.|++.+.++....-. .. ...
T Consensus 226 ~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~-~~-------------~~~ 291 (381)
T PRK02948 226 THEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHS-TS-------------CLP 291 (381)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCC-cc-------------CcC
Confidence 00000112222222 222222222 3455666777999999999999987644321100 00 123
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccce-eccccccccCCCCHHHHHhcCC----CCCeEEEEeccCCC
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL-MSCSGSSTSSELNAEEKALAGI----SAGLVRMSVGYLGT 301 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~iR~s~g~~~~ 301 (324)
.++.|.+++. ...++...+.. .|+ .++.|..++. +..| ......++. ..+.+|+|+| ..+
T Consensus 292 ~i~~~~~~~~-~~~~~~~~l~~---~gI-~v~~g~~c~~~~~~p---------~~~~~~~~~~~~~~~~~lRis~~-~~~ 356 (381)
T PRK02948 292 HIIGVTIKGI-EGQYTMLECNR---RGI-AISTGSACQVGKQEP---------SKTMLAIGKTYEEAKQFVRFSFG-QQT 356 (381)
T ss_pred CEEEEEeCCC-CHHHHHHhccc---CCE-EEEchHhcCCCCCCC---------CHHHHHcCCChHHhCceEEEEcC-CCC
Confidence 4677777632 23445555543 343 4444433221 1111 112222332 1478999999 999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 020548 302 LDQRWSQFEKALSRMQD 318 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~~~ 318 (324)
++++++.+.++|+.+-+
T Consensus 357 t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 357 TKDQIDTTIHALETIGN 373 (381)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 172
>PLN02651 cysteine desulfurase
Probab=99.92 E-value=1.9e-23 Score=186.69 Aligned_cols=260 Identities=19% Similarity=0.175 Sum_probs=172.5
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
+.++||+|+++..+|+++...+.... . .|++++.++.+ |++++++++ ++++++|++++++|+||.+.|+++|
T Consensus 84 ~~~~g~~vl~~~~~h~s~~~~~~~~~-~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~v~~~~n~tG~~~~l~~I 160 (364)
T PLN02651 84 YKDKKKHVITTQTEHKCVLDSCRHLQ-Q-EGFEVTYLPVKSDGLVDLDELAAAI-RPDTALVSVMAVNNEIGVIQPVEEI 160 (364)
T ss_pred ccCCCCEEEEcccccHHHHHHHHHHH-h-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEECCCCCceecccHHHH
Confidence 45789999999999999887775442 3 68888777653 799999999 8889999999999999999999999
Q ss_pred HHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhh---hccCCC
Q 020548 86 SRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL---MLLGPT 160 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~---~~~~~~ 160 (324)
.++||++|+++++|+++ .+ ...+..++++|+++.|.|||+|++| .|+++.+++....+.+...+.. .+..++
T Consensus 161 ~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G---~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT 237 (364)
T PLN02651 161 GELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKG---VGALYVRRRPRVRLEPLMSGGGQERGRRSGT 237 (364)
T ss_pred HHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCc---eEEEEEcCCCCCCCCccccCCCccCCccCCC
Confidence 99999999999999998 22 4456667789999999999865544 4888766655554443322100 012233
Q ss_pred CCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 161 MNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.......+...++. .+...++..+.++++.+.|++ . +.++..|.-+.. ...++++|.++
T Consensus 238 ~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~--------------~~~~i~~~~~~ 303 (364)
T PLN02651 238 ENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEK--------------RYPGTLNLSFA 303 (364)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCccc--------------CcCCEEEEEeC
Confidence 332222222222222 233345567888888888876 3 446655531110 13558899887
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccCCCHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~~~~~~~ 306 (324)
+. +...+...|.. ++++.|..++..... .......+|.+ .+.+|+|++ ..++++++
T Consensus 304 ~~-~~~~~~~~L~~------i~v~~g~~c~~~~~~--------~~~~~~~~g~~~~~~~~~vR~S~~-~~~t~~di 363 (364)
T PLN02651 304 YV-EGESLLMGLKE------VAVSSGSACTSASLE--------PSYVLRALGVPEEMAHGSLRLGVG-RFTTEEEV 363 (364)
T ss_pred CC-CHHHHHHHhCC------EEEEchhhcCCCCCC--------cCHHHHHcCCChHHhCceEEEEcC-CCCCHHHc
Confidence 42 34556666653 356666554322100 11223445543 379999999 99888765
No 173
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.92 E-value=5.8e-23 Score=186.42 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=175.2
Q ss_pred hHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh---cCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV---QGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG 77 (324)
|+..++..+. .+||.|+++...|.++...+. ..|.++..++.+|.+++++.++ .+++++|++++|+||||
T Consensus 118 a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG 192 (410)
T PRK13392 118 SNDAALSTLGKLLPGCVILSDALNHASMIEGIR-----RSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDG 192 (410)
T ss_pred HHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHH-----HcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCc
Confidence 4455666554 389988888778887766552 2577766666667777776663 25789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCC-CCc--------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSP--------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~~--------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++. ... .....|++++|+||+||++ |||+++++++++.++
T Consensus 193 ~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~~~~~~~~l~ 268 (410)
T PRK13392 193 DIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAASADLIDFVR 268 (410)
T ss_pred ccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhcCHHHHHHHH
Confidence 99999999999999999999999994 332 110 1114689999999999887 489999999999887
Q ss_pred HhhhhhhhccCCCCC---HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMN---PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ ..+.... +.++..++..........+++.++++++.+.|++.+.++. |.
T Consensus 269 ~~~~~~--~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 326 (410)
T PRK13392 269 SFAPGF--IFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANGIPVM-PS------------------- 326 (410)
T ss_pred HhCcch--hccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC-------------------
Confidence 765421 1122222 2222223333333334556678889999999998876543 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.++......++.+.|.. +.|++. . .+..|.. +....++|+|++ ...+++
T Consensus 327 ~~~~~~i~~~~~~~~~~~~~~L~~--~~GI~v-~------~~~~p~~--------------~~~~~~lRis~~-~~~t~e 382 (410)
T PRK13392 327 PSHIVPVMVGDPTLCKAISDRLMS--EHGIYI-Q------PINYPTV--------------PRGTERLRITPT-PLHDDE 382 (410)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH--hCCEEE-e------eeCCCCC--------------CCCCceEEEEEC-CCCCHH
Confidence 355766777644456677776642 133311 1 1111111 112368999998 888888
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+.+.++
T Consensus 383 did~l~~aL~~~~~~ 397 (410)
T PRK13392 383 DIDALVAALVAIWDR 397 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889998888877554
No 174
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.92 E-value=9.6e-23 Score=183.78 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=174.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~ 79 (324)
++..++.+++++||.|++++|.|+++...+. ..|.++..++..|++++++.+.. +++++|++++++||||.+
T Consensus 105 a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~ 179 (385)
T TIGR01825 105 TNQGVLSALLRKGDIVLSDELNHASIIDGLR-----LTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDV 179 (385)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCc
Confidence 5566777889999999999999999876663 25677777766788888887732 368899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCC----------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLS----------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~----------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
.|+++|.++|+++|+++|+||+|+.+... ....+.|+++.|+||+++++ +||+++++++++.+...
T Consensus 180 ~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~~~~~~~~~~~~~~~ 255 (385)
T TIGR01825 180 APLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV----GGYAAGHKELIEYLKNR 255 (385)
T ss_pred cCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC----CCEEecCHHHHHHHHHh
Confidence 99999999999999999999999433211 12236889999999999775 49999999988888755
Q ss_pred hhhhhhccCCCCC-HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 150 HQGALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.......+...+. ..++...+..+.......++..++++++.+.|++.+.++..|. +++
T Consensus 256 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------------~~~ 315 (385)
T TIGR01825 256 ARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYDTGGSE--------------------TPI 315 (385)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--------------------CCE
Confidence 3211111111111 1122222222222224556677889999999998776544332 346
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+.+.++.......|.+.+.. .|+. +..+. .+.. +...+.||++++ ...++++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~L~~---~gi~-v~~~~------~~~~--------------~~~~~~iRi~~~-~~~~~e~i~~ 370 (385)
T TIGR01825 316 TPVVIGDEKAAQEFSRRLFD---EGIF-AQSIV------FPTV--------------PRGTARIRNIPT-AEHTKDDLDQ 370 (385)
T ss_pred EEEEECCHHHHHHHHHHHHH---CCcE-EcccC------CCCC--------------CCCCceEEEEEc-CCCCHHHHHH
Confidence 67777654445667777654 2331 11110 0100 112368999998 7777777777
Q ss_pred HHHHHHhhh
Q 020548 309 FEKALSRMQ 317 (324)
Q Consensus 309 l~~~l~~~~ 317 (324)
+.++++++-
T Consensus 371 ~~~~l~~~~ 379 (385)
T TIGR01825 371 ALDAYEKVG 379 (385)
T ss_pred HHHHHHHHH
Confidence 777776653
No 175
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.92 E-value=8.9e-23 Score=182.24 Aligned_cols=194 Identities=20% Similarity=0.277 Sum_probs=138.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc------CCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~------~~~~~v~ 68 (324)
+|+..++.+++++||+|+++.++|.+....++ ..|+++..++.+ |++++++++.+ +++++|+
T Consensus 70 ~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~ 144 (361)
T cd06452 70 EGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAE-----RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALAL 144 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcchHHHHHHH-----hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEE
Confidence 47888888889999999999999888765552 368888777542 78999888832 3789999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
+++|+||||...|+++|.++|+++|+++|+|++|+ + ...+..+.++|++++|+||++++ +.++ ||++.++++++.+
T Consensus 145 l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~-~~~~-G~l~~~~~~~~~l 222 (361)
T cd06452 145 LTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAA-SAPI-GVLATTEEWADIV 222 (361)
T ss_pred EECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccC-CCCe-EEEEECHHHHHHH
Confidence 99999999999999999999999999999999983 2 22444566899999999999976 4585 9999999999888
Q ss_pred HHhhhhhh----hccCCCCCHHHHHHHhcCcccHH---HHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 147 MDLHQGAL----MLLGPTMNPKVAFELSERIPHLG---LRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 147 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
........ ...+.+.....+..+...+.... .+.++..++++++.+.|+++ ++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~ 286 (361)
T cd06452 223 FRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQL 286 (361)
T ss_pred hccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 66443110 01122222111111222222222 23333455678999999998 56654
No 176
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.92 E-value=7.2e-23 Score=184.25 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=179.4
Q ss_pred chHHHHHHHc-----cCC-CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQL-----CSS-GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~-----~~~-gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++.++ .++ +|+|+++..+|+++...+... .. .|.++.+++.+ |++++++++ ++++++|+++
T Consensus 71 eal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~-~~-~G~~v~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~ 147 (382)
T TIGR03403 71 ESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFL-ES-LGVEVTYLPINEQGTITAEQVREAI-TEKTALVSVM 147 (382)
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHH-HH-CCCEEEEEecCCCCCCCHHHHHHhc-ccCCeEEEEE
Confidence 4667777764 245 478999999999988877433 33 78888888764 789999999 7789999999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+++||||.+.|+++|.++|+++|+++++|++++ + ...+..+.++|+++.|+||++|++| .|+++.++... +.+
T Consensus 148 ~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~g~l~vr~~~~--~~p 222 (382)
T TIGR03403 148 WANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKG---VGGLYIRKGVE--LTP 222 (382)
T ss_pred cccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCc---eEEEEECCCCC--CCC
Confidence 999999999999999999999999999999983 2 3334455689999999999987776 47776554321 111
Q ss_pred hhhh---hhhccCCCCCHHH---HHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 149 LHQG---ALMLLGPTMNPKV---AFELSERI-PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
...+ ......+++.... +..++... +.++...++..+.++++.+.|++.+. .+..|.-.
T Consensus 223 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~------------- 289 (382)
T TIGR03403 223 LFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREH------------- 289 (382)
T ss_pred cccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCC-------------
Confidence 1100 0001112222222 11222211 12344456678888899999988653 44433200
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEe
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSV 296 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~ 296 (324)
..++++.|.+++. ....+...|.. .|+ .++.|..++.. . ......+..+|.+ .+.||+|+
T Consensus 290 ---~~~~~~~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~c~~~------~--~~~~~v~~~~g~~~~~~~~~iR~s~ 353 (382)
T TIGR03403 290 ---RVPNTILISIKGV-EGEAMLWDLNK---AGI-AASTGSACASE------D--LEANPVMVAIGADKELAHTAIRLSL 353 (382)
T ss_pred ---CcCCEEEEEeCCC-CHHHHHHhhcc---CCE-EEEchhccCCC------C--CCcCHHHHHcCCChHHhCeeEEEEC
Confidence 1244777888742 23445554543 333 44555433211 1 1112334445543 36899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 020548 297 GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+ ..+++++++.+.++|+.+.
T Consensus 354 ~-~~~t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 354 S-RFTTEEEIDYTIEVFKKAV 373 (382)
T ss_pred C-CCCCHHHHHHHHHHHHHHH
Confidence 9 9999999999999887664
No 177
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.92 E-value=7.5e-23 Score=184.74 Aligned_cols=267 Identities=15% Similarity=0.144 Sum_probs=174.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc---CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ---GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~---~~~~~v~~~~~~ 73 (324)
+++..++..++++||+|+++++.|.+.. +.....+ .|.+++.++.+ |++++++++.. +++++|++++++
T Consensus 71 ~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~-~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~ 147 (401)
T PLN02409 71 GAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQR-LNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNE 147 (401)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHH-cCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeec
Confidence 4677777788899999999999887654 2222233 68887777653 79999999933 379999999999
Q ss_pred CCcccccChHHHHHH--HHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 74 NPTLAVANIPELSRL--AHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l--~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
||||.+.|+++|.++ |+++|+++++|++++ ....+..++++|+++.|.||++++|. ++ |+++.++++++.+.+.
T Consensus 148 ~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~-G~-G~l~~~~~~~~~~~~~ 225 (401)
T PLN02409 148 TSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPT-GL-GIVCASPKALEASKTA 225 (401)
T ss_pred ccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCC-Cc-ceeEECHHHHHHHhcC
Confidence 999999999999999 999999999999983 22234445689999999999997754 44 9999999888887643
Q ss_pred hhh--------------hhhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 150 HQG--------------ALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 150 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
... .+.....+++......+...++ .++...+++.++++++.+.|++.++++..|.-.
T Consensus 226 ~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~--- 302 (401)
T PLN02409 226 KSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPE--- 302 (401)
T ss_pred CCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChh---
Confidence 210 0001011232211111111122 244566777889999999999888765543200
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
...+.++++.++...+...+...+.. ++|+ .+..| . ....+.
T Consensus 303 ------------~~s~~v~~~~~p~~~~~~~l~~~l~~--~~~i-~i~~G----------~-------------~~~~~~ 344 (401)
T PLN02409 303 ------------WRSDTVTAVVVPEGIDSAEIVKNAWK--KYNL-SLGLG----------L-------------NKVAGK 344 (401)
T ss_pred ------------hcccceEEEeCCCCCCHHHHHHHHHH--hCCE-EEEcC----------C-------------CcccCC
Confidence 01345677887633334455555432 1232 11111 0 011357
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+|+|.. -+++.+.+..+..+|+.
T Consensus 345 ~~Rig~~-g~~~~~~~~~~~~~~~~ 368 (401)
T PLN02409 345 VFRIGHL-GNVNELQLLGALAGVEM 368 (401)
T ss_pred EEEEcCC-CCCCHHHHHHHHHHHHH
Confidence 8999987 66666665555555554
No 178
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.91 E-value=1.9e-22 Score=180.77 Aligned_cols=266 Identities=20% Similarity=0.243 Sum_probs=181.8
Q ss_pred hHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 3 AISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 3 ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
|++.++.++ +++||+|++.+.+|++....+.....+ .|.++..++.+ |++++++++ ++++++|++++.+|
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~i~~~~~~~~~~~~~~~~l-~~~~~lv~~~~~~~ 150 (371)
T PF00266_consen 73 ALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKR-KGAEVRVIPADPGGSLDLEDLEEAL-NPDTRLVSISHVEN 150 (371)
T ss_dssp HHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHH-TTEEEEEEEEGTTSSCSHHHHHHHH-HTTESEEEEESBET
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccc-chhhhccccccccchhhhhhhhhhh-ccccceEEeecccc
Confidence 677888887 789999999999999999888766544 78888877642 899999999 79999999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.||...|+++|.++||++|+++++|.++ +....+..+.++|++++|.+|++|++| .|+++.++++.+.+.+...+
T Consensus 151 ~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G---~g~l~v~~~~~~~~~p~~~~ 227 (371)
T PF00266_consen 151 STGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPG---LGFLYVRPEAIERLRPAKPG 227 (371)
T ss_dssp TTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSST---EEEEEEEHHHHHHHHTSSSS
T ss_pred cccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCc---hhhheehhhhhhcccccccc
Confidence 9999999999999999999999999997 223345556689999999999555555 49999998888888543321
Q ss_pred -----------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCC
Q 020548 153 -----------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDH 209 (324)
Q Consensus 153 -----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~ 209 (324)
...+.++++.......+...++. ++...++..++.+++.+.|++.+. .+..|..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~--- 304 (371)
T PF00266_consen 228 GGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDD--- 304 (371)
T ss_dssp SSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSC---
T ss_pred ccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecc---
Confidence 11123334444332222222222 334445668889999999999887 4444431
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
...++++++|.+++. +...+.+.|.. .|+ .++.|..+... .....+. +
T Consensus 305 ------------~~~~~~i~~~~~~~~-~~~~~~~~L~~---~~I-~~~~G~~~~~~--------------~~~~~~~-~ 352 (371)
T PF00266_consen 305 ------------EPRRPSIVSFNLPGS-DADDVVKYLEE---RGI-AVSTGSACAGP--------------SLDILGM-G 352 (371)
T ss_dssp ------------GGBGTTEEEEEETTS-SHHHHHHHHHH---HTE-EEEESTTTCHH--------------HHHHHHT-T
T ss_pred ------------cccccceEEEeecCC-CHHHHHHHHhh---cCE-EEeccCcccHH--------------HHHHhCC-C
Confidence 113678999999742 23444444443 122 33444332210 0001122 2
Q ss_pred CeEEEEeccCCCHHHHHHHH
Q 020548 290 GLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l 309 (324)
+.||+|+| ..+++++++.|
T Consensus 353 ~~iRvS~~-~~nt~~dv~~l 371 (371)
T PF00266_consen 353 GVIRVSLH-YYNTEEDVDRL 371 (371)
T ss_dssp TEEEEE-G-TTSSHHHHHHH
T ss_pred CEEEEecc-CCCCHHHHhhC
Confidence 89999999 99999888875
No 179
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.91 E-value=1.9e-22 Score=182.57 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=173.2
Q ss_pred hHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|+..++.++ .++||+|+++.++|+++...+..+ .. .|.+++.++.+ |++++++++ ++++++|++++++
T Consensus 76 a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~v~~~~ 152 (402)
T TIGR02006 76 SNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-ER-EGFEVTYLPPKSNGLIDLEELKAAI-RDDTILVSIMHVN 152 (402)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECCC
Confidence 455555544 368999999999999988777433 23 58888887653 899999999 7789999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|+++ .+ ...+..+.++|+++.|+||++|++| .|+++.+++....+.+...
T Consensus 153 n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~ 229 (402)
T TIGR02006 153 NEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKG---IGALYVRRKPRVRLEALIH 229 (402)
T ss_pred cCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCc---eEEEEEccCCCCCCCceec
Confidence 99999999999999999999999999998 22 2334445689999999999887555 4777665543333322211
Q ss_pred hh--h-hccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 152 GA--L-MLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 152 ~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+. . .+..+++.......+...+ ..++...++..+.++++.+.|++.+. .+..+.....
T Consensus 230 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~-------------- 295 (402)
T TIGR02006 230 GGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRV-------------- 295 (402)
T ss_pred CCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC--------------
Confidence 10 0 0112222222211111111 23445556678888889998887653 3322110000
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccC
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYL 299 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~ 299 (324)
.....++|...+ .+.+...++. +.++.|..++... .........+|+. .+.||+|+| .
T Consensus 296 p~~~~v~f~~~~---~~~~~~~l~~------i~v~~G~~c~~~~--------~~~~~~l~~lg~~~~~~~~~vR~S~~-~ 357 (402)
T TIGR02006 296 PGNLNVSFNYVE---GESLIMALKD------LAVSSGSACTSAS--------LEPSYVLRALGINDELAHSSIRFTIG-R 357 (402)
T ss_pred CCeEEEEEeCcC---HHHHHHhcCC------EEEechhhcCCCC--------CCccHHHHHcCCChhhcCceEEEEec-C
Confidence 012234554222 2234444432 2444443332110 0011222334543 478999999 8
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 020548 300 GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~ 317 (324)
.+++++++.+.++|..+.
T Consensus 358 ~~t~edid~l~~~l~~~~ 375 (402)
T TIGR02006 358 FTTEEEIDYAVKLVKSAI 375 (402)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999998887764
No 180
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.91 E-value=5e-23 Score=164.76 Aligned_cols=256 Identities=11% Similarity=0.116 Sum_probs=183.3
Q ss_pred hHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 3 AISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 3 ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
.|..+++..|.|| ++|+...|+|+.|.--. .+.+++++.++.. +.+++.+.+..+ .+|++++++|+||
T Consensus 98 ~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A-----~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNP 172 (375)
T KOG0633|consen 98 LIDLIIRCVCDPGKEKILDCPPTYSMYVVDA-----AINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNP 172 (375)
T ss_pred HHHHHHhheecCCccceeecCCcceeEEEEe-----ecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCC
Confidence 5788899999999 89999999999876433 4578999888764 789999888544 7999999999999
Q ss_pred cccccChHHHHHHHHhc-CCEEEEcCCCCcCCC--Cc----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 76 TLAVANIPELSRLAHDK-GVTVVVDNTFSPLVL--SP----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~--~~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
||.....+.|.++..-. +.++++||+|-.|.- +. -+..+-+++.++||.||..|.|+ |+-..+..+.+.+..
T Consensus 173 tg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRv-G~~~~~~~ia~iln~ 251 (375)
T KOG0633|consen 173 TGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRV-GYGAFPLSIAEILNR 251 (375)
T ss_pred CcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCcceeEe-ecccccHHHHHHHHh
Confidence 99998888888877654 799999999965542 11 23478899999999999999997 999999999999988
Q ss_pred hhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 149 LHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...+ ..-+.+....+..+++ ....++.......+.+.++...|.+.++ ++..+.
T Consensus 252 ~KaP---YNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~------------------- 309 (375)
T KOG0633|consen 252 AKAP---YNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGS------------------- 309 (375)
T ss_pred ccCC---ccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcc-------------------
Confidence 7764 3334444444444444 4556777777788888899999998876 332222
Q ss_pred cceEEEEEeC---CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 225 FGGLLCLDME---TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 225 ~g~~~~~~l~---~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
.++|+.+++. +........+.+.. .|+ -+.+.+.+ .|. .+++|+++|+.++
T Consensus 310 daNFiLi~v~~~~n~~akkly~q~at~---~gV-vVRfrgse---------------------~~c-~G~lRitvGt~Ee 363 (375)
T KOG0633|consen 310 DANFILIEVTGGDNGMAKKLYKQDATK---MGV-VVRFRGSE---------------------EGC-KGYLRITVGTPEE 363 (375)
T ss_pred cccEEEEEEcCCCcHHHHHHHHHHHHh---cce-EEEEcCCc---------------------ccc-ceeEEEEcCCccc
Confidence 4668888876 22322323332222 222 11111110 112 4899999996566
Q ss_pred HHHHHHHHHHH
Q 020548 302 LDQRWSQFEKA 312 (324)
Q Consensus 302 ~~~~~~~l~~~ 312 (324)
+..+++.+++.
T Consensus 364 ntvL~k~~K~~ 374 (375)
T KOG0633|consen 364 NTVLMKCLKQF 374 (375)
T ss_pred chHHHHHHHhh
Confidence 77777777664
No 181
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.91 E-value=6.3e-22 Score=179.23 Aligned_cols=262 Identities=15% Similarity=0.187 Sum_probs=171.7
Q ss_pred hHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|+..++..+.+ +++.|+.....|.+....+. ..|.++..++..|.+++++.++. +++++|++++|+||+|
T Consensus 117 an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G 191 (402)
T TIGR01821 117 ANDATLATLAKIIPGCVIFSDELNHASMIEGIR-----HSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDG 191 (402)
T ss_pred HHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHH-----HcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCC
Confidence 45566666554 67777776666766665553 25666666666788888887732 3689999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCCCC-----c----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-----P----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~-----~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++... . .....|++++|++|.+|++ |||+++++++++.+.
T Consensus 192 ~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~~~~~~~~l~ 267 (402)
T TIGR01821 192 DIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAASRKLIDAIR 267 (402)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----CceeecCHHHHHHHH
Confidence 99999999999999999999999984 32211 0 1113689999999999887 499999999988887
Q ss_pred HhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....+. .......+..++. .++.+.......++..++++++.+.|++.+.++. +.
T Consensus 268 ~~~~~~--~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 325 (402)
T TIGR01821 268 SYAPGF--IFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALGIPVI-PN------------------- 325 (402)
T ss_pred HhCcCc--eecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcCCCcC-CC-------------------
Confidence 654321 1122223222222 2222222233445567889999999998876543 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.++.......+.+.+.. +.|++. ..+.+|.. ....+++|+|+. ...+.+
T Consensus 326 ~~~i~~i~~~~~~~a~~~~~~L~~--~~Gi~v-------~~~~~p~~--------------~~g~~~lRis~~-~~~t~e 381 (402)
T TIGR01821 326 PSHIVPVIIGDAALCKKVSDLLLN--KHGIYV-------QPINYPTV--------------PRGTERLRITPT-PAHTDK 381 (402)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh--cCCEEE-------EeECCCCC--------------CCCCceEEEEeC-CCCCHH
Confidence 355778877654456667777542 123311 11111211 112368999998 777888
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+.+.++
T Consensus 382 di~~~~~~l~~~~~~ 396 (402)
T TIGR01821 382 MIDDLVEALLLVWDR 396 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776543
No 182
>PLN02721 threonine aldolase
Probab=99.91 E-value=3.5e-22 Score=178.06 Aligned_cols=254 Identities=15% Similarity=0.171 Sum_probs=166.5
Q ss_pred hHHHHHHHccC-CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc------CCceEEEEe
Q 020548 3 AISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ------GRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~------~~~~~v~~~ 70 (324)
++..++.++++ +||+|++++|+|....... ... ...|.++..++.+ |++++++.+.. +++++|+++
T Consensus 67 a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~ 144 (353)
T PLN02721 67 GNLISVLVHCDVRGSEVILGDNSHIHLYENG-GIS-TLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLE 144 (353)
T ss_pred HHHHHHHHHccCCCCeEEEcCccceehhccc-chh-hhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEe
Confidence 34456666676 9999999999986544310 011 2268888877642 89999999932 588999997
Q ss_pred c-CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCC--cC---CCCcc--CCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 71 S-ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS--PL---VLSPA--RLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 71 ~-~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~--~~---~~~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
+ ++||+|.+.| +++|.++|+++|+++|+|++|. .+ ...+. ..++|.++.|+||+++++ +||+++++
T Consensus 145 ~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~ 221 (353)
T PLN02721 145 NTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAP---VGSVIVGS 221 (353)
T ss_pred ccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCc---eeeEEecC
Confidence 7 6788999876 7899999999999999999872 11 11222 226788899999999764 24457889
Q ss_pred hhHHHHHHHhhhhhhhccCCCCC--HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-Cce-eCCCCCCCchhHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKV-LYPGLEDHPHHELL 215 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~p~~~~~~~~~~~ 215 (324)
+++++.+..... ..++.+. ...++..+..+.....++++..++++.+.+.|++.+ ..+ ..+.
T Consensus 222 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------- 287 (353)
T PLN02721 222 KSFIRKAKRLRK----TLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAV---------- 287 (353)
T ss_pred HHHHHhHHHHHH----hcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCc----------
Confidence 999888776654 2222211 112222222233333345555677889999999874 333 2121
Q ss_pred HHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 216 KSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
.+++++++++.. .....+.+.|.. .|+. ..|. .++++|
T Consensus 288 ---------~~~~~~~~~~~~~~~~~~~~~~~L~~---~gi~-----------v~~~-----------------~~~~lR 327 (353)
T PLN02721 288 ---------ETNIVYFDITDGSRITAEKLCKSLEE---HGVL-----------LMPG-----------------NSSRIR 327 (353)
T ss_pred ---------cceEEEEEccCCccccHHHHHHHHHh---CCcE-----------EecC-----------------CCceEE
Confidence 356889988642 346677777764 3331 1111 146899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++++ ...++++++.+.++|+++
T Consensus 328 ~~~~-~~~~~~~i~~~~~~l~~~ 349 (353)
T PLN02721 328 VVTH-HQISDSDVQYTLSCFQQA 349 (353)
T ss_pred EEec-CcCCHHHHHHHHHHHHHH
Confidence 9999 777788888887777654
No 183
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.91 E-value=7.1e-22 Score=177.75 Aligned_cols=194 Identities=19% Similarity=0.265 Sum_probs=141.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc------CCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ------GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~------~~~~~v~ 68 (324)
+|+..++.+++++||+|+++.++|.+....++ ..|.++..++. .|++++++++.+ +++++|+
T Consensus 89 ~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~ 163 (387)
T PRK09331 89 EGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAE-----RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALAL 163 (387)
T ss_pred HHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEE
Confidence 46788888889999999999999988876652 36888888876 279999998842 3789999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
+++|+|++|.+.|+++|+++|+++|+++++|++|+ + +..+....++|++++|+||++++ +.++ |+++.++++++.+
T Consensus 164 l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~-~~~~-G~l~~~~~~i~~~ 241 (387)
T PRK09331 164 LTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAA-SAPS-GVLATTEEYADKV 241 (387)
T ss_pred EECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccC-CCCE-EEEEECHHHHhhc
Confidence 99999999999999999999999999999999983 2 23444566899999999999976 4565 9999999888877
Q ss_pred HHhhhhhh----hccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 147 MDLHQGAL----MLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 147 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
......+. ...+.+..+..+..++..+..+ ..+.++..++++++.+.|++. |+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~ 305 (387)
T PRK09331 242 FRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQL 305 (387)
T ss_pred ccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 55432110 0112222211111112122222 234455677888999999998 66655
No 184
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=99.90 E-value=3.3e-22 Score=169.61 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=153.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|...++..++.|||.-+++.|.|+++-.-++. + .|++++++... +.+++|+++++ .+++.|++
T Consensus 157 ~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~---r-Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvli 232 (471)
T KOG0256|consen 157 SANETLMFCLADPGDAFLVPTPYYPGFDRDLRW---R-TGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLI 232 (471)
T ss_pred hhhHHHHHHhcCCCceeeecCCCCCccccccee---c-cCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEE
Confidence 456677777899999999999999999766631 3 68888888753 58888888742 47899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-c-----c--------CCCCcEEEeCCccccccCCCee
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-P-----A--------RLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-~-----~--------~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++|+||.|.+.+ +..+..++.++++.+|+||+|++-.++ + + ..+..-++.|+||-+|.||.|+
T Consensus 233 tNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRv 312 (471)
T KOG0256|consen 233 TNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRV 312 (471)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEE
Confidence 999999999976 456677788999999999999443221 1 1 2245688999999999999998
Q ss_pred EEEEEc-ChhHHHHHHHhhhhhhhccC-CCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 133 AGAVCG-PANLVNSMMDLHQGALMLLG-PTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 133 ~G~i~~-~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
|.|+. ++++....++... +.. ++..|..++.++.+-.. +.+..+|+..+.+++.+.|++.|+.+. +.
T Consensus 313 -GviYS~ne~VvsaA~kmss----f~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl-~s- 385 (471)
T KOG0256|consen 313 -GVIYSNNEDVVSAATKMSS----FGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCL-KS- 385 (471)
T ss_pred -EEEEecChHHHHHHHHHhh----ccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcee-ec-
Confidence 99976 5567777776655 333 33444455555554322 345556778888999999999998665 33
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|-++|+.+.
T Consensus 386 -----------------~AGlF~wvDlr 396 (471)
T KOG0256|consen 386 -----------------NAGLFCWVDLR 396 (471)
T ss_pred -----------------CCeeEEEEEhH
Confidence 47889999886
No 185
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.90 E-value=8.3e-22 Score=177.23 Aligned_cols=278 Identities=14% Similarity=0.108 Sum_probs=176.0
Q ss_pred chHHHHHHHcc---CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~---~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++ .+||+|+++..+|+++...++.. .+ .|.++..++.+ |++++++++ +++++++++++++
T Consensus 70 ~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~g~~~~~~l~~~i-~~~~~lv~i~~~~ 146 (379)
T TIGR03402 70 ESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHL-EK-QGYKVTYLPVDEEGRLDLEELRAAI-TDDTALVSVMWAN 146 (379)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHH-HH-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEEccc
Confidence 35666666543 45789999999999888777543 23 68888887653 799999999 7899999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|++|+ + ...+..+.++|+++.|.+|++|++| .|+++.+++.. +.+...
T Consensus 147 n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~g~l~v~~~~~--~~p~~~ 221 (379)
T TIGR03402 147 NETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKG---VGALYIRKGTR--FRPLLR 221 (379)
T ss_pred CCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCc---eEEEEECCCCC--CCCccc
Confidence 999999999999999999999999999983 2 2234445689999999999776555 48887665431 221111
Q ss_pred h-h--hhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHh-CCC-ceeCCCCCCCchhHHHHHHhccC
Q 020548 152 G-A--LMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKK-LGL-KVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 152 ~-~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~-~~~-~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+ . .....+++.......+...+ ..++...++..++++++.+.|++ .+. .+..+.. .
T Consensus 222 g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~--~------------- 286 (379)
T TIGR03402 222 GGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPT--K------------- 286 (379)
T ss_pred CCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCc--c-------------
Confidence 0 0 00112222222211111111 23444445667888888888875 543 4432220 0
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
..++++.|.++.. ....+...+.. .|+ .++.|..++..... .......+|.. ++.||+|+|
T Consensus 287 -~~~~~~~~~~~~~-~~~~~~~~l~~---~gI-~v~~g~~c~~~~~~--------~~~~~~~lg~~~~~~~~~vR~S~~- 351 (379)
T TIGR03402 287 -RLPNTVNISFEYI-EGEAILLLLDM---EGI-CASSGSACTSGSLE--------PSHVLRAMGVPHTAAHGSIRFSLS- 351 (379)
T ss_pred -CCCCEEEEEecCC-CHHHHHHhhcc---CCE-EEEchhhcCCCCCC--------cCHHHHHcCCChhhcCceEEEEcC-
Confidence 1233666666532 23456666653 343 44555433221100 01223334442 478999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~ 317 (324)
..+++++++.+.++|+.+.
T Consensus 352 ~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 352 RYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999988888887664
No 186
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.90 E-value=1.6e-21 Score=176.97 Aligned_cols=262 Identities=16% Similarity=0.195 Sum_probs=172.4
Q ss_pred hHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|...++..+++ +++.|+.....|.+....++ ..+.++..++..|++++++.++. +++++|++++++||+|
T Consensus 118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~-----~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G 192 (407)
T PRK09064 118 SNDATLSTLAKLIPDCVIFSDELNHASMIEGIR-----RSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDG 192 (407)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHH-----HcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCc
Confidence 33445555443 67766666666666655552 24566666666788888888732 5789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cC-CCC--c----cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PL-VLS--P----AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~-~~~--~----~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++ ... . .. ...|++++|+||.||+. |||+++++++++.+.
T Consensus 193 ~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~~~~~~~~~~~l~ 268 (407)
T PRK09064 193 DIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM----GGYIAGSAALVDAVR 268 (407)
T ss_pred cccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc----CceEecCHHHHHHHH
Confidence 99999999999999999999999984 43 211 0 11 14589999999999886 499999999888887
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ .......+..++.++..++.+ ....++..++++++.+.|++.++++. +.
T Consensus 269 ~~~~~~--~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 326 (407)
T PRK09064 269 SYAPGF--IFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAGIPVM-PN------------------- 326 (407)
T ss_pred HhCccc--cccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC-------------------
Confidence 654321 112222333222222223222 23356678899999999998876543 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.+++......+.+.+.. +.|++. ..+..|.. ....+++|+|++ ..++++
T Consensus 327 ~~~iv~i~~~~~~~~~~l~~~L~~--~~gi~v-------~~~~~p~~--------------~~~~~~lRis~~-~~~t~e 382 (407)
T PRK09064 327 ESHIVPVMVGDPEKCKKASDMLLE--EHGIYV-------QPINYPTV--------------PRGTERLRITPT-PFHTDE 382 (407)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH--hCCEEE-------eeECCCCC--------------CCCCceEEEEeC-CCCCHH
Confidence 356788888654456667776542 123311 11111111 111367999999 888888
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+.+.++
T Consensus 383 di~~l~~~l~~~~~~ 397 (407)
T PRK09064 383 MIDHLVEALVEVWAR 397 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876543
No 187
>PLN02822 serine palmitoyltransferase
Probab=99.90 E-value=2.2e-21 Score=178.12 Aligned_cols=264 Identities=15% Similarity=0.173 Sum_probs=175.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--------CCc-eEEEEecCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--------GRT-KVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--------~~~-~~v~~~~~~ 73 (324)
++..++.+++++||.|++....|.++...+ .+.+.++.+++.+|.++++..+++ +++ ++|++++++
T Consensus 181 a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~-----~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~ 255 (481)
T PLN02822 181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGL-----YLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIY 255 (481)
T ss_pred HHHHHHHHhCCCCCEEEEeCCccHHHHHHH-----HHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence 567788889999999998888777776555 235677888888888777776631 234 799999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCC--c------cC---CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS--P------AR---LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~------~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|++|.+.|+++|+++|++||+++|+||+|+..... . .. ...|++++|++|.+|++ |||+++++++
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~----GG~i~g~~~i 331 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATE----GGFCTGSARV 331 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhC----CeEEEcCHHH
Confidence 99999999999999999999999999999522211 0 11 15789999999999877 4999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHH--HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHh
Q 020548 143 VNSMMDLHQGALMLLGPTMNPK--VAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++.++.... ..+++++.+... ++..++..+....+..++++++++.+.+.|++. ++.+..|.
T Consensus 332 i~~~~~~~~-~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-------------- 396 (481)
T PLN02822 332 VDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNT-------------- 396 (481)
T ss_pred HHHHHhcCC-ceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCC--------------
Confidence 988875443 222333333222 222233222222456677899999999999986 44443333
Q ss_pred ccCCCcceEEEEEeCCH--------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 220 NKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
.++++++.+++. .....|.+.+.. +.|++. ..+. +|... .+..+..
T Consensus 397 -----~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~--e~GV~v-~~~~------~~~~~------------~~~~~~~ 450 (481)
T PLN02822 397 -----LSPIVFLHLEKSTGSAKEDLSLLEHIADRMLK--EDSVLV-VVSK------RSTLD------------KCRLPVG 450 (481)
T ss_pred -----CCCEEEEEeCCCcccccchHHHHHHHHHHHHh--cCCEEE-EeeC------CCCcC------------CCCCCCc
Confidence 577888888631 224567766541 133311 1110 11100 0111346
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|+++. ...++++++.+.++|+++.
T Consensus 451 lRi~is-~~~t~edI~~~~~~l~~~~ 475 (481)
T PLN02822 451 IRLFVS-AGHTESDILKASESLKRVA 475 (481)
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 999988 7777777777777776553
No 188
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.90 E-value=5.3e-22 Score=175.83 Aligned_cols=258 Identities=16% Similarity=0.075 Sum_probs=167.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhc------CCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQ------GRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~------~~~~~v~~~~ 71 (324)
+|+..++.+++++||+|++++|+|....... ... +..|.++..++. .|++++++++.+ +++++|++++
T Consensus 58 ~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~ 135 (338)
T cd06502 58 AANQLALAAHTQPGGSVICHETAHIYTDEAG-APE-FLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLEN 135 (338)
T ss_pred HHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHH-HHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEe
Confidence 4677888888999999999999987654211 000 125778777765 389999999832 2789999999
Q ss_pred CCCCccc--ccChHHHHHHHHhcCCEEEEcCCCCcC-----CCC--ccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 72 ISNPTLA--VANIPELSRLAHDKGVTVVVDNTFSPL-----VLS--PARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 72 ~~nptG~--~~~~~~i~~l~~~~~~~~ivD~~~~~~-----~~~--~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|+||+|. ..++++|+++|+++|+++++|++|..+ ... ....+.|+++.|+||++++++ |++++.++++
T Consensus 136 p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~~~~ 212 (338)
T cd06502 136 TTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GAVVVGNRDF 212 (338)
T ss_pred ecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ceEEECCHHH
Confidence 9998443 245788999999999999999987211 111 112368899999999998876 4566789899
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
++.+....... ..+.......+..+...+ .....+.++..++++++.+.|++.+..+. |.
T Consensus 213 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~--------------- 274 (338)
T cd06502 213 IARARRRRKQA--GGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGLES-EV--------------- 274 (338)
T ss_pred HHHHHHHHHHh--CCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCcc-cc---------------
Confidence 99887765411 111122222222222222 22445667778888999999999876332 22
Q ss_pred cCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 221 KEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 221 ~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.++++.+.++ +......+.+.+....+.|+ ...+ ...+++|++++ .
T Consensus 275 ----~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi-----------~~~~-----------------~~~~~lRi~~~-~ 321 (338)
T cd06502 275 ----QTNIVLLDPVEANAVFVELSKEAIERRGEGV-----------LFYA-----------------WGEGGVRFVTH-W 321 (338)
T ss_pred ----cCCeEEEecCCccHHHHHHHHHHHHhhhCCE-----------EEEe-----------------cCCCeEEEEee-c
Confidence 3567777775 33334445444321000121 1111 01278999999 8
Q ss_pred CCHHHHHHHHHHHHHh
Q 020548 300 GTLDQRWSQFEKALSR 315 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~ 315 (324)
.+++++++.+.++++.
T Consensus 322 ~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 322 DTTEEDVDELLSALKA 337 (338)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 8888888887777754
No 189
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.90 E-value=3.5e-21 Score=172.95 Aligned_cols=271 Identities=13% Similarity=0.118 Sum_probs=173.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHh---hh----------cCCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSA---IV----------QGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~---l~----------~~~~~~v~ 68 (324)
+|+..++.+++++||+|+++++.|.++...+. ..+.++.+++..|.+++++. +. ++++++|+
T Consensus 69 ~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~-----l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi 143 (392)
T PLN03227 69 STTSSTVAAFAKRGDLLVVDRGVNEALLVGVS-----LSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLV 143 (392)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-----HcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEE
Confidence 45667888889999999999999999877662 13456666666666665553 31 13688999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCC-----------CccCCCCcEEEeCCccccccCCCeeEEE
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVL-----------SPARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~-----------~~~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+++++||+|.+.|++++.++|+++|+++|+||+|+ + +.. .| ..++|+++.|++|.+++. +|+
T Consensus 144 ~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p-~~~~Div~~slsk~~g~~----gg~ 218 (392)
T PLN03227 144 VEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKP-MVHAEIVTFSLENAFGSV----GGM 218 (392)
T ss_pred EcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCC-CCCceEEEeechhhhhcc----CcE
Confidence 99999999999999999999999999999999984 2 211 11 236799999999998654 599
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC---CCCCC
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP---GLEDH 209 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p---~~~~~ 209 (324)
+++++++++.++.... .. ..++++.+..++. .+......+.+.++..++.+++.+.|++.+...... .+.-.
T Consensus 219 v~~~~~~~~~~~~~~~-~~-~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~ 296 (392)
T PLN03227 219 TVGSEEVVDHQRLSGS-GY-CFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVIT 296 (392)
T ss_pred EecCHHHHHHHHHhCc-Cc-cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccC
Confidence 9999888877764432 11 2333323322222 222222234667778999999999998744321100 00000
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHH---------HHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEK---------ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---------~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
....|+++.+.+.+... ...+.+.+.. .|++....|... ....|
T Consensus 297 ------------~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~Gi~~~~~~~~~-~~~~~----------- 349 (392)
T PLN03227 297 ------------SDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS---EGVAVVSTGGHV-KKFLQ----------- 349 (392)
T ss_pred ------------CCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH---CCCEEEeccccc-CCcCC-----------
Confidence 00247789999965322 2356666553 343221112110 00001
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
..++..||++++ ...++++++.+.++++++-
T Consensus 350 -----~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~~ 380 (392)
T PLN03227 350 -----LVPPPCLRVVAN-ASHTREDIDKLLTVLGEAV 380 (392)
T ss_pred -----CCCCceEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 123577999999 8888887777777766554
No 190
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.90 E-value=3.7e-21 Score=174.35 Aligned_cols=261 Identities=15% Similarity=0.186 Sum_probs=173.8
Q ss_pred hHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|+..++..+.+ +||.|+.....|.++...+. ..|.++..++..|++++++.++. +++++|++++++|++|
T Consensus 117 An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G 191 (406)
T PRK13393 117 SNWAALSTLGSRLPGCVILSDELNHASMIEGIR-----HSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDG 191 (406)
T ss_pred HHHHHHHHhhcCCCCCEEEEccchhHHHHHHHH-----HcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCC
Confidence 55566665554 78888777888887777663 24666777777788888887732 3678999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCC-CC--------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLV-LS--------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~--------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++. .. ......|++++|++|.++++ |||+++++++.+.+.
T Consensus 192 ~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~~~~~~~~l~ 267 (406)
T PRK13393 192 DIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITGSAALCDFIR 267 (406)
T ss_pred chhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeCCHHHHHHHH
Confidence 99999999999999999999999983 432 11 01113588889999999886 499999999888887
Q ss_pred HhhhhhhhccCCCCCHH---HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPK---VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ ..+.+..+. ++...+..........+++.++++++.+.|++.+..+. +.
T Consensus 268 ~~~~~~--~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 325 (406)
T PRK13393 268 SFASGF--IFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAGIPHL-PN------------------- 325 (406)
T ss_pred HhCcCc--eecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCcC-CC-------------------
Confidence 654421 122233322 22222222222223345567888999999988765432 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.|+++.+.+++......+.+.+.. +.|++. ..+.+|.. ....+.+|+|++ ..++++
T Consensus 326 ~~~i~~v~~~~~~~~~~l~~~L~~--~~Gi~v-------~~~~~p~~--------------p~g~~~iRis~~-~~~t~e 381 (406)
T PRK13393 326 PSHIVPVMVGDPVLCKQISDELLD--RYGIYV-------QPINYPTV--------------PRGTERLRITPS-PLHTDA 381 (406)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH--hCCEEE-------EeECCCCC--------------CCCCceEEEEEC-CCCCHH
Confidence 466777777654455667766652 123311 11111211 112368999999 888888
Q ss_pred HHHHHHHHHHhhhh
Q 020548 305 RWSQFEKALSRMQD 318 (324)
Q Consensus 305 ~~~~l~~~l~~~~~ 318 (324)
+++.+.++|+.+.+
T Consensus 382 did~l~~~l~~~~~ 395 (406)
T PRK13393 382 DIEHLVQALSEIWA 395 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999888887754
No 191
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.90 E-value=1.5e-21 Score=176.86 Aligned_cols=255 Identities=17% Similarity=0.089 Sum_probs=169.6
Q ss_pred HHHHccCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 7 VLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 7 ~~~~~~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
+..+.+.+ ||+|+++++.|+++...+.....+ .|.+++.++.+ |++++++++ ++++++|++++|+ ++|.+
T Consensus 98 ~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~t~~viv~~~~-~~G~~ 174 (398)
T cd00613 98 GLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEP-LGIEVVEVPSDEGGTVDLEALKEEV-SEEVAALMVQYPN-TLGVF 174 (398)
T ss_pred HHHHHhcccCCCEEEEcCccCcchHHHHHHhccc-CCcEEEEeccCCCCCcCHHHHHHhc-CCCeEEEEEECCC-CCcee
Confidence 34444555 999999999999999888654433 56777777653 689999999 8889999999985 89999
Q ss_pred cCh-HHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhHHHHHHHhhhh
Q 020548 80 ANI-PELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 80 ~~~-~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.|. ++|+++|+++|+++|+|++++. ....+...++|++++|+||++ +| |++. |+++.++++.+.+.....+
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~-g~l~~~~~~~~~~~~~~~~ 252 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGA-GFFAVKKELVRFLPGRLVG 252 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCce-eEEEEhhhhHhhCCCCeec
Confidence 885 9999999999999999998732 233445568999999999998 44 5674 9999988877764211000
Q ss_pred ---------------------------hhhccCCC-CCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 153 ---------------------------ALMLLGPT-MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 153 ---------------------------~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.....++. .....++..+. ....+++..+++.++++++.+.|++.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 332 (398)
T cd00613 253 VTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLP 332 (398)
T ss_pred cccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 00001111 11112222222 1223455667789999999999998765321
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
+. . .....+++.++. .....++.+.|.. .|++. ....
T Consensus 333 -~~---~--------------~~~~~v~~~~~~~~~~~~~~~~~~L~~---~gi~~-----------~~~~--------- 371 (398)
T cd00613 333 -FN---G--------------PFFHEFVLRLPPLYGIRAEDLAKALID---GGFHA-----------PTMY--------- 371 (398)
T ss_pred -CC---C--------------CeeEEEEEEcCCcchHHHHHHHHhhhh---cCccc-----------cccc---------
Confidence 21 0 123346777763 3456777777764 23211 0000
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
....+.+|+|++ ..+++++++.+.++|
T Consensus 372 -----~~~~~~lRis~~-~~~t~edid~~~~~L 398 (398)
T cd00613 372 -----LPVDGTLMIEPT-ETETKEELDALLEAL 398 (398)
T ss_pred -----cCCCCeEEEEcC-CCCCHHHHHHHHHhC
Confidence 002478999999 999998888887654
No 192
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.89 E-value=1.1e-20 Score=161.56 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=156.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc--------CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ--------GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~--------~~~~~v~~ 69 (324)
.|+..+++.++++||.|++...+|++....+ +..|+.++.|+.+ ++|.|++.+.+ +++++++.
T Consensus 135 ~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~-----~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYT 209 (472)
T KOG0634|consen 135 DGLFKVLRTLINRGDHVLIEEYTYPSALQSM-----EALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYT 209 (472)
T ss_pred hHHHHHHHHhhcCCCceEEecccchHHHHhc-----cccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEe
Confidence 4788899999999999999999999988877 4478888888876 78888887632 34666665
Q ss_pred -ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------------------------ccCC---CCcEE
Q 020548 70 -ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------------------------PARL---GADVV 117 (324)
Q Consensus 70 -~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------------------------~~~~---~~d~~ 117 (324)
.+.+||||...+ .++|.++|++|+++||+||.|.-+... ...+ |+++-
T Consensus 210 IPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr 289 (472)
T KOG0634|consen 210 IPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIR 289 (472)
T ss_pred CcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEe
Confidence 669999999976 459999999999999999998332211 0111 67799
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC------cccHHHHHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------IPHLGLRMKEHCHRALIFA 191 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 191 (324)
..||||.+ +||.|+ ||+.+++.+++++..... ..+...+..++.....++.. ++++.+....|..++..+.
T Consensus 290 ~dSFSKii-aPGlRl-G~it~~~~~l~ril~~ae-~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l 366 (472)
T KOG0634|consen 290 NDSFSKII-APGLRL-GWITGNSLFLKRILDLAE-VATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALL 366 (472)
T ss_pred ccchhhhh-cCccee-EEeecCHHHHHHHhhhcc-eeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 569998 999999988888876654 33344455666655554432 2445666677899999999
Q ss_pred HHHHhC-CC---ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKL-GL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~-~~---~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
..|.+. +. ++..|. .|.|+|++++
T Consensus 367 ~Al~kylp~~~~~~~~P~-------------------aGmFiwv~i~ 394 (472)
T KOG0634|consen 367 SALDKYLPKSVCEYHPPK-------------------AGMFIWVEIP 394 (472)
T ss_pred HHHHHhCCCCeeEEecCC-------------------cceEEEEEec
Confidence 999886 33 344444 7999999995
No 193
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.89 E-value=3.4e-21 Score=172.29 Aligned_cols=265 Identities=15% Similarity=0.132 Sum_probs=166.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
+|+..++.+++.+||++++..+.+.+.. +.....+ .|.+++.++.+ |++++++++.. .+++++.+.+++||
T Consensus 65 ~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 141 (363)
T TIGR02326 65 FAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEY-LGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETT 141 (363)
T ss_pred HHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHH-cCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCC
Confidence 5788888888888888777665554432 1111223 67777776653 78999999833 35678889999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
||...|+++|.++|+++|+++++|++++ ....+..++++|++++|+||++++|. . .|+++.+++.++.+.....+
T Consensus 142 tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~-G-~G~l~~~~~~~~~~~~~~~~~ 219 (363)
T TIGR02326 142 TGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVP-G-FGFVIARQAELAACKGNARSL 219 (363)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCC-c-ceEEEECHHHHHHhhcCCCce
Confidence 9999999999999999999999999872 22233345589999999999985532 2 39999988877765321100
Q ss_pred ----------------hhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 153 ----------------ALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 153 ----------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
...+..+.+...+...++..+ ..++.+.+++.++++++.+.|++.+..+..+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------ 293 (363)
T TIGR02326 220 SLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEI------ 293 (363)
T ss_pred eecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc------
Confidence 000111111111111122111 1245666778999999999999988755433200
Q ss_pred HHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 214 LLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
..+.+++|.+++. .+...+.+.+.. .|+ .+ .++.. ...+.
T Consensus 294 ----------~~~~~~~~~~~~~~~~~~~~v~~~L~~---~gi-~v----------~~g~~--------------~~~~~ 335 (363)
T TIGR02326 294 ----------QSPIITSFYSPEDPDYRFADFYQRLKE---QGF-VI----------YPGKV--------------SQVDC 335 (363)
T ss_pred ----------CCceEEEEECCCCCCCCHHHHHHHHHH---CCE-EE----------ECCcC--------------CCCCE
Confidence 1234567887642 244566677664 233 11 22111 11368
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|+|+. ...+.+.++.+.++|+.+
T Consensus 336 iRi~~~-~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 336 FRIGNI-GEVDAADITRLLTAIGKA 359 (363)
T ss_pred EEEecC-CCCCHHHHHHHHHHHHHH
Confidence 999964 345566666666666554
No 194
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.89 E-value=1e-20 Score=169.57 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=170.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
.|+..++.++..+||+|++..+.|.+.. +.....+ .|.++..++.+ |++++++++.. .++++|++++++||
T Consensus 67 ~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~-~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 143 (368)
T PRK13479 67 FSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEY-LGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETT 143 (368)
T ss_pred HHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHH-cCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCc
Confidence 4788889999999999999888776653 1112223 67777777653 79999998832 35678999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCC---CCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHHhhh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLV---LSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~---~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||...|+++|.++|+++|+++|+|+++ .+. .+..+.+.|++++|++|++++ +| + ||++.++++++.+.....
T Consensus 144 tG~~~~~~~i~~l~~~~~~~livDa~~-~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G--~-G~l~~~~~~~~~~~~~~~ 219 (368)
T PRK13479 144 TGILNPLDEIAAVAKRHGKRLIVDAMS-SFGAIPIDIAELGIDALISSANKCIEGVPG--F-GFVIARRSELEACKGNSR 219 (368)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEccc-ccCCccccccccCceEEEecCccccccCCC--c-eEEEECHHHHHHhhcCCC
Confidence 999999999999999999999999765 332 233345789999999998744 45 3 999999988877654321
Q ss_pred hhh-------------hccCCCCCHH---HHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 152 GAL-------------MLLGPTMNPK---VAFELSE---RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 152 ~~~-------------~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
... .....+++.. ....++. ....++++.+++.++++.+.+.|++.++++..+.-.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----- 294 (368)
T PRK13479 220 SLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEI----- 294 (368)
T ss_pred CeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchh-----
Confidence 000 0000112211 1111121 122355667788999999999999988754433200
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
....++.|.++.. .+..++.+.+.. .|+ .+ .++.. ...+
T Consensus 295 -----------~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gi-~v----------~~g~~--------------~~~~ 335 (368)
T PRK13479 295 -----------QSPIIVTFHAPADPAYDFKEFYERLKE---QGF-VI----------YPGKL--------------TQVD 335 (368)
T ss_pred -----------cCceEEEEECCCCCCcCHHHHHHHHHH---CCE-EE----------ecCCC--------------CCCC
Confidence 1223566666522 234567777664 233 11 11110 0136
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.+|+|.. ..++.++++.+.++|+.+-+
T Consensus 336 ~iRis~~-~~~t~edi~~~l~~L~~~l~ 362 (368)
T PRK13479 336 TFRIGCI-GDVDAADIRRLVAAIAEALY 362 (368)
T ss_pred EEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 7999964 34566777777777766643
No 195
>PRK14012 cysteine desulfurase; Provisional
Probab=99.89 E-value=2.7e-21 Score=175.17 Aligned_cols=276 Identities=14% Similarity=0.119 Sum_probs=169.0
Q ss_pred hHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|++.++.++ .++||+|++++++|+++...+..+ .+ .|+++.+++.+ |++++++++ ++++++|++++++
T Consensus 78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~-~g~~~~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~~~~ 154 (404)
T PRK14012 78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLDPQSNGIIDLEKLEAAM-RDDTILVSIMHVN 154 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-Hh-CCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECcC
Confidence 556666554 478999999999999988777533 22 58888887653 899999999 8889999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|++++ + ...+....++|++++|++|.+|++| + |+++.+++....+.+...
T Consensus 155 n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g--~-G~l~~~~~~~~~~~~~~~ 231 (404)
T PRK14012 155 NEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKG--I-GALYVRRKPRVRLEAQMH 231 (404)
T ss_pred CCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCc--e-EEEEEecCCCCCCCceec
Confidence 999999999999999999999999999982 2 2234445689999999999876433 3 777655543323322111
Q ss_pred hhhh---ccCCCCCHHHHH---HHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 152 GALM---LLGPTMNPKVAF---ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 152 ~~~~---~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+... +..+++...... .++.. ........+++.+.++++.+.|++.+. .+..+. ... .
T Consensus 232 g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~-~~~-------------~ 297 (404)
T PRK14012 232 GGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDL-EQR-------------V 297 (404)
T ss_pred CCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCc-ccc-------------C
Confidence 1000 111111211111 11111 112344556677888888888877653 322111 000 0
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccce-eccccccccCCCCHHHHHhcCC----CCCeEEEEecc
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL-MSCSGSSTSSELNAEEKALAGI----SAGLVRMSVGY 298 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~iR~s~g~ 298 (324)
.....++|.+.+. ..+...++. ++++.|..+.. ...|. .....++. ..+.||+|++
T Consensus 298 ~~~~~~~~~~~~~---~~~~~~l~~------~~i~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~iRls~~- 358 (404)
T PRK14012 298 PGNLNVSFNYVEG---ESLIMALKD------LAVSSGSACTSASLEPS---------YVLRALGLNDELAHSSIRFSLG- 358 (404)
T ss_pred CCEEEEEEeCcCH---HHHHHhCCC------eEEEchhhhCCCCCCCC---------HHHHHcCCChhhcCceEEEEec-
Confidence 1223456665432 235555542 23344433211 00110 00111232 3578999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~ 317 (324)
..+++++++.+.++|+++.
T Consensus 359 ~~~t~~dvd~~~~~l~~~~ 377 (404)
T PRK14012 359 RFTTEEEIDYAIELVRKSI 377 (404)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 8888888888888877653
No 196
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.88 E-value=1.1e-20 Score=168.47 Aligned_cols=261 Identities=15% Similarity=0.151 Sum_probs=167.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCC-chh-HHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTL-YGG-THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~-y~~-~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~ 73 (324)
+|+..++.+++.+||++++..+. |+. +...++ . .|.++..++.+ |++++++++.. ++++++++++++
T Consensus 61 ~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~----~-~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 135 (355)
T TIGR03301 61 FAVEATIGSLVPRDGKLLVLINGAYGERLAKICE----Y-LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHE 135 (355)
T ss_pred HHHHHHHHhccCCCCeEEEECCCchhhHHHHHHH----H-cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecC
Confidence 47788888888888887766554 443 223332 2 67777776643 79999999832 356788888999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|+||...|+++|.++|+++|+++|+|++++. ...+....++|++++|++|++++ +| + |+++.++++++.+....
T Consensus 136 ~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G--~-g~~~~~~~~~~~~~~~~ 212 (355)
T TIGR03301 136 TTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPG--F-GFVIARRDLLEASAGNA 212 (355)
T ss_pred CcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCc--e-eEEEECHHHHHHhhCCC
Confidence 9999999999999999999999999997622 22233345799999999999754 44 4 99999999888765211
Q ss_pred hhh------------h-hccCCCCCHHHH---HHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 151 QGA------------L-MLLGPTMNPKVA---FELSERI---PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 151 ~~~------------~-~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
... . .....+++.... ...+..+ ..++...++++++++++.+.|++.+.++..|.-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~---- 288 (355)
T TIGR03301 213 RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERW---- 288 (355)
T ss_pred CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCC----
Confidence 000 0 001112222221 1122211 2256677788899999999999887654433210
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
..+.++++.++.. .+...+.+.+.. .|+ .+.++.. ...
T Consensus 289 ------------~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-----------~i~~~~~--------------~~~ 328 (355)
T TIGR03301 289 ------------QSPIIVSFLYPDDPDFDFDDFYQELKE---RGF-----------VIYPGKL--------------TLA 328 (355)
T ss_pred ------------CCCcEEEEECCCCCcchHHHHHHHHHH---CCE-----------EEECCcc--------------ccc
Confidence 1344678888631 334567777664 232 1112110 012
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+++|+|+. ..++.++++.+.++|+.
T Consensus 329 ~~iRis~~-~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 329 DTFRIGTI-GEIDAADIERLLEAIKD 353 (355)
T ss_pred cEEEEecC-CCCCHHHHHHHHHHHHh
Confidence 68999996 66677777888777764
No 197
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.88 E-value=5e-21 Score=173.58 Aligned_cols=267 Identities=16% Similarity=0.186 Sum_probs=169.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhh-hcCcccceeEEEec--CC------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVD--IS------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-~~~~~~g~~~~~~~--~~------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++++|||+|++++|+|+++...... .... .|.++..++ .+ |++++++++.++++++++++++
T Consensus 92 ~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~ 170 (402)
T cd00378 92 QANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSA-SGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGAS 170 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCccCccccccccccccc-cceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCc
Confidence 477888899999999999999999877554211 0112 565444432 22 8999999984568999999888
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNS 145 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~ 145 (324)
+|| ...|+++|+++|+++|+++|+|++| .++. ..+.. +.|++++|+||+++ |.+ +|+++.++ ++.+.
T Consensus 171 ~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l~--G~~-gg~i~~~~~~~~~~ 244 (402)
T cd00378 171 AYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTLR--GPR-GGLILTRKGELAKK 244 (402)
T ss_pred ccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCCC--CCC-ceEEEeccHHHHHH
Confidence 775 5679999999999999999999996 4432 22333 67999999999983 556 58888776 88888
Q ss_pred HHHhhhhhhhccCCCCCHHHH-HHHhc-Ccc-cHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCCCCCchhHHHHHHhcc
Q 020548 146 MMDLHQGALMLLGPTMNPKVA-FELSE-RIP-HLGLRMKEHCHRALIFARRMKKLGLKVL-YPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~p~~~~~~~~~~~~~~~~~ 221 (324)
+....... ...++.+....+ ..++. ... ....+.+++.++++++.+.|++.++.+. .|.
T Consensus 245 l~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------- 307 (402)
T cd00378 245 INSAVFPG-LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGT---------------- 307 (402)
T ss_pred HHHHhCcc-ccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCC----------------
Confidence 87654311 111111122211 11121 222 3456677789999999999999877553 222
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC
Q 020548 222 EYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300 (324)
Q Consensus 222 ~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~ 300 (324)
.++++|+.+++ ......+.+.+.. .|+ .+... ..|..... ...++.+|+++. ..
T Consensus 308 ---~~~~v~v~~~~~~~~~~~~~~~l~~---~gI-~v~~~------~~p~~~~~-----------~~~~~~lRi~~~-~~ 362 (402)
T cd00378 308 ---DNHLVLVDLRPKGITGKAAEDALEE---AGI-TVNKN------TLPWDPSS-----------PFVPSGIRIGTP-AM 362 (402)
T ss_pred ---CCeEEEEeCCccCCCHHHHHHHHHH---cCc-EEcCC------cCCCCCCC-----------CCCCCeeEecCH-HH
Confidence 46788999862 2223344444442 333 11111 01211100 112468999987 43
Q ss_pred C----HHHHHHHHHHHHHhhh
Q 020548 301 T----LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 301 ~----~~~~~~~l~~~l~~~~ 317 (324)
+ .+++++.+.+.|..+-
T Consensus 363 ~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 363 TTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred HHhCCCHHHHHHHHHHHHHHH
Confidence 2 3566777777776653
No 198
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.88 E-value=1.6e-20 Score=165.57 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=121.5
Q ss_pred chHHHHHHHccCCCCEEEEc---CCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAA---RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~---~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+|+..++.++++|||+|+++ .|.|.++...++ ..|.++.. ..++++++. .+++++|+++. +|++|.
T Consensus 82 ~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~-----l~ga~~~~--~~~l~~l~~---~~~~~lIiitg-~s~~G~ 150 (346)
T TIGR03576 82 SAILATILALEPPGRKVVHYLPEKPAHPSIPRSCK-----LAGAEYFE--SDELSELKK---IDGTSLVVITG-STMDLK 150 (346)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHH-----HcCCEEec--cCCHHHHhh---CcCceEEEEEC-CCCCCc
Confidence 47888899999999999975 468887777663 35666533 346666432 34678888864 689999
Q ss_pred c---cChHHHHHHHHhcCCEEEEcCCCCcCCC---C---ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 79 V---ANIPELSRLAHDKGVTVVVDNTFSPLVL---S---PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 79 ~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~---~---~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+ .++++|+++|+++|+++++||+|+.+.. . ....+.|+++.|+||+ ++|.| +||+++++++++.+...
T Consensus 151 v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKa--laG~r-~G~v~~~~~li~~l~~~ 227 (346)
T TIGR03576 151 VVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKL--MDGPR-GGLLAGRKELVDKIKSV 227 (346)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchh--ccccc-eEEEEeCHHHHHHHHHh
Confidence 8 5789999999999999999999954321 1 1233678999999995 45778 49999999999999887
Q ss_pred hhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 150 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
...+. .+.+.+.+.++..++.... .+...+.+.++++.+.+.++.
T Consensus 228 ~~~~~-~s~~~~~~~aa~~aL~~~~-~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 228 GEQFG-LEAQAPLLAAVVRALEEFE-LSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred hcCcc-cCccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence 65211 1123333323322333222 233445556666666676764
No 199
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.88 E-value=3.6e-20 Score=162.48 Aligned_cols=258 Identities=18% Similarity=0.236 Sum_probs=193.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC-----CceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-----RTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG 77 (324)
|...++.++++++|.|+...-.|-+....++ ..+.++.....+|+++|++.+++. +.++|+++.+.+..|
T Consensus 111 AN~~~i~~l~~~~dli~~D~lnHASiidG~r-----ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdG 185 (388)
T COG0156 111 ANLGLLSALLKKGDLIFSDELNHASIIDGIR-----LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG 185 (388)
T ss_pred hHHHHHHHhcCCCcEEEEechhhhhHHHHHH-----hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCC
Confidence 5677888999999999999999999888773 356777777778999999999441 258889999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCC-CcCCC-C---------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTF-SPLVL-S---------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~-~---------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
.+.|+++|.+++++|+++++|||++ .+..- . .....+|++++|++|.||.. ||++.++..+.+.+
T Consensus 186 diApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~----Gg~v~g~~~~~d~L 261 (388)
T COG0156 186 DIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS----GGYIAGSAALIDYL 261 (388)
T ss_pred CcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc----CceeeCcHHHHHHH
Confidence 9999999999999999999999998 33321 1 11124589999999999876 59999999999999
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.....++ ..+.++.+..++..... +.....++++..++...+.+.++..++.+. |.
T Consensus 262 ~~~ar~~--ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~~~~~-~s------------------ 320 (388)
T COG0156 262 RNRARPF--IFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGLVLL-PS------------------ 320 (388)
T ss_pred HHhCCce--eccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCccC-CC------------------
Confidence 8765433 34444444444333333 333446777778888888877777666432 32
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
..+++.+.+.+...+..+.+.+.. . |.+...+.+|..+. ....+|+++. ...++
T Consensus 321 -~s~I~pv~~gd~~~a~~~s~~l~~---------~-Gi~v~~i~~PTVp~--------------gtarlRi~lt-a~ht~ 374 (388)
T COG0156 321 -ESPIIPVILGDEERALEASRALLE---------E-GIYVSAIRPPTVPK--------------GTARLRITLT-AAHTE 374 (388)
T ss_pred -CCCeeeeEeCCHHHHHHHHHHHHH---------C-CeeEeeecCCCCCC--------------CcceEEEEec-CCCCH
Confidence 466889999887888888888775 2 44455555665542 2367999999 99999
Q ss_pred HHHHHHHHHHHhh
Q 020548 304 QRWSQFEKALSRM 316 (324)
Q Consensus 304 ~~~~~l~~~l~~~ 316 (324)
++|+.+.++|..+
T Consensus 375 ~~I~~l~~~l~~~ 387 (388)
T COG0156 375 EDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 200
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.88 E-value=6.3e-21 Score=169.71 Aligned_cols=269 Identities=15% Similarity=0.112 Sum_probs=167.2
Q ss_pred chHHHHHHHccCCCC---------------EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCC
Q 020548 2 SAISSVLMQLCSSGG---------------HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd---------------~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~ 63 (324)
+|+..++.+++++|| +|+++.|.|..+...+.... ...|.++++++.+ |++++++++ +++
T Consensus 71 ~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~-~~~g~~~v~v~~~~~~d~~~le~ai-~~~ 148 (363)
T TIGR01437 71 AGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMV-RLGGGKVVEAGYANECSAEQLEAAI-TEK 148 (363)
T ss_pred HHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHH-HhcCCeEEEEcCCCCCCHHHHHHhc-Chh
Confidence 578889999999998 99999977776531111111 2268888887653 899999999 888
Q ss_pred ceEEE-EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 64 TKVLY-FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 64 ~~~v~-~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|++++ +++++||+|.+.|+++|.++|+++|+++++|++|+.-.......+.|++++|+||++++| + +|++++++++
T Consensus 149 t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~~~~~~g~D~~~~S~~K~l~gp--~-~G~l~~~~~~ 225 (363)
T TIGR01437 149 TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQKYYRLGADLVIYSGAKAIEGP--T-SGLVLGKKKY 225 (363)
T ss_pred ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchHHHHHcCCCEEEEeCCcccCCC--c-eEEEEEcHHH
Confidence 99766 577899999999999999999999999999999852222233557899999999988544 5 5999999888
Q ss_pred HHHHHHhhhhhhh-ccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHh
Q 020548 143 VNSMMDLHQGALM-LLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 143 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++.++....+... ...+.........++... ..-.+..+++.++++.+.+.|++.+ ..+..+.-. ....
T Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~--~~~~------ 297 (363)
T TIGR01437 226 IEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDE--AGRD------ 297 (363)
T ss_pred HHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCC--CCCc------
Confidence 8877543331100 000000001111111111 1122334455567778999999874 344322100 0000
Q ss_pred ccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 220 NKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
-.-..+.|... ...+..++.+.|+. .+. . +...+ .....+.+|+++.
T Consensus 298 ----~~~~~v~~~~~~~g~~~~~l~~~L~~---~~~-~--------I~~r~---------------~~~~~~~~~l~~~- 345 (363)
T TIGR01437 298 ----IARAEIRFDESELGMTAADVVQALRQ---GEP-A--------IYTRG---------------YKANEGIIEIDPR- 345 (363)
T ss_pred ----CceEEEEEeccCCCCCHHHHHHHHhc---CCC-C--------EEEee---------------eeecCCeEEEEee-
Confidence 00123445542 12345677777763 110 0 11111 1223578999998
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
..+ +++++.+.++|.++
T Consensus 346 ~~~-~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 346 SVT-GGQLDIIVERIREI 362 (363)
T ss_pred cCC-HHHHHHHHHHHHHh
Confidence 655 77889999988764
No 201
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.88 E-value=3.2e-20 Score=166.56 Aligned_cols=255 Identities=14% Similarity=0.134 Sum_probs=168.6
Q ss_pred hHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|+..++.++. ++||+|+++++.|.++...++ . .|.+++.++.+ |++++++++ ++++++|++.+++
T Consensus 88 a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~vi~~~~~ 161 (371)
T PRK13520 88 ANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAAD----M-LGVELRRAPLDDDYRVDVKAVEDLI-DDNTIGIVGIAGT 161 (371)
T ss_pred HHHHHHHHHHhhccCCCceEEecCcchHHHHHHHH----H-cCceEEEecCCCCCcCCHHHHHHHH-hhCCEEEEEEcCC
Confidence 4444544443 357999999999998776653 3 67888777653 899999999 7778888888889
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC----CCc--c---CCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV----LSP--A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~----~~~--~---~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|+||.+.|+++|.++|+++|+++++|++|+++. ... . ..++|.+..|.+|+..+ +.+.|++++.++++.+
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a-~~~~G~~~~~~~~~~~ 240 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA-PIPAGGILFRDESYLD 240 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc-cCCceEEEEcCHHHHH
Confidence 999999999999999999999999999995432 111 1 23689999999997644 4564345556777777
Q ss_pred HHHHhhhhhh---h--ccCC-C-CCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 145 SMMDLHQGAL---M--LLGP-T-MNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 145 ~l~~~~~~~~---~--~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
.+.....+.. . ..|. . .....+...+..+ ..++++.++..++++++.+.|++.++++..+.
T Consensus 241 ~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------- 310 (371)
T PRK13520 241 ALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP---------- 310 (371)
T ss_pred hhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC----------
Confidence 6642211100 0 0011 1 1112222233222 22456677789999999999998877532222
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
..+++.+.+++ ...+.+.|.. .|+ .++.. ..++.+|+|
T Consensus 311 ---------~~~~v~~~~~~---~~~v~~~L~~---~gi-~v~~~--------------------------~~~~~iRis 348 (371)
T PRK13520 311 ---------VLNIVAFDDPN---PDEVREKLRE---RGW-RVSVT--------------------------RCPEALRIV 348 (371)
T ss_pred ---------CceEEEEecCC---HHHHHHHHHH---CCc-eeccC--------------------------CCCCEEEEE
Confidence 24578888764 3455555553 222 11110 013679999
Q ss_pred eccCCCHHHHHHHHHHHHHhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++ ..+++++++.+.++|+++.
T Consensus 349 ~~-~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 349 CM-PHVTREHIENFLEDLKEVK 369 (371)
T ss_pred EE-CCCCHHHHHHHHHHHHHHh
Confidence 99 8888889999998887764
No 202
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.88 E-value=4.6e-20 Score=165.69 Aligned_cols=243 Identities=13% Similarity=0.161 Sum_probs=161.2
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
++||+|++++++|.++...++ ..|.+++.++.+ |++++++++ ++++..+++..++||||.+.|+++|.+
T Consensus 104 ~~g~~vl~~~~~h~~~~~~~~-----~~G~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~vv~~~~~~~tG~~~~~~~i~~ 177 (373)
T TIGR03812 104 KRTPNIIVPESAHFSFEKAAE-----MLGLELRYAPLDEDYTVDVKDVEDLI-DDNTIGIVGIAGTTELGQIDDIEELSK 177 (373)
T ss_pred CCCcEEEECCcchHHHHHHHH-----HcCCeEEEEeeCCCCCcCHHHHHHHH-hhCcEEEEEECCCCCCCccCCHHHHHH
Confidence 467999999999999877663 368888777653 899999998 666654454457899999999999999
Q ss_pred HHHhcCCEEEEcCCCCcCCC---------CccC---CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh
Q 020548 88 LAHDKGVTVVVDNTFSPLVL---------SPAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 155 (324)
Q Consensus 88 l~~~~~~~~ivD~~~~~~~~---------~~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~ 155 (324)
+|+++|+++++|++|+.+.. ...+ .+.|.+..|.||+..+ +.+.||+++.++++.+.+..... +..
T Consensus 178 l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~-~~~~G~~~~~~~~~~~~l~~~~~-~~~ 255 (373)
T TIGR03812 178 IALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLS-PIPAGGILFRSKSYLKYLSVDAP-YLT 255 (373)
T ss_pred HHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCC-cCCceEEEEeCHHHHhhhcccCc-ccC
Confidence 99999999999999953321 1222 2678999999996543 44544566778888777642211 100
Q ss_pred cc-----CCCCCH---HHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 156 LL-----GPTMNP---KVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 156 ~~-----~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
.. .++... ..+...+..+ ..++...++..++++++.+.|++.+.....+. .
T Consensus 256 ~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~ 316 (373)
T TIGR03812 256 VKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEP-------------------V 316 (373)
T ss_pred CCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC-------------------C
Confidence 00 011111 1122222222 22455677789999999999999876433222 2
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
.+++.+.+++. ..+.+.|.. .|+ .++. ...++++|+|++ ..+++++
T Consensus 317 ~~~v~~~~~~~---~~v~~~L~~---~gi-~v~~--------------------------~~~~~~iRis~~-~~~t~ed 362 (373)
T TIGR03812 317 LNIVAFEVDDP---EEVRKKLRD---RGW-YVSV--------------------------TRCPKALRIVVM-PHVTREH 362 (373)
T ss_pred ceEEEEEeCCH---HHHHHHHHH---CCc-eecc--------------------------CCCCCEEEEEEE-CCCCHHH
Confidence 45778888753 345555553 232 1110 002468999999 8888888
Q ss_pred HHHHHHHHHhh
Q 020548 306 WSQFEKALSRM 316 (324)
Q Consensus 306 ~~~l~~~l~~~ 316 (324)
++.+.++|+++
T Consensus 363 id~l~~~L~~~ 373 (373)
T TIGR03812 363 IEEFLEDLKEI 373 (373)
T ss_pred HHHHHHHHhhC
Confidence 99998888754
No 203
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.88 E-value=1.7e-20 Score=170.01 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=164.9
Q ss_pred chHHHHHHHccCCC---CEEEEcCCCchhHHHHHhhhcCcccceeE----EEecCC-----CHHHHHHhhh--cCCceEE
Q 020548 2 SAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS-----DHEMVNSAIV--QGRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~----~~~~~~-----d~~~l~~~l~--~~~~~~v 67 (324)
++++.++.++++++ +.|+++..+|++....+.....+ .|+++ ..++.+ +++++++.++ +++|++|
T Consensus 97 ~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv 175 (406)
T TIGR01814 97 INLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVI 175 (406)
T ss_pred HHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHh-cCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEE
Confidence 36777788776664 36888889999876666433333 57665 344332 6788888773 3689999
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHHH
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVN 144 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~ 144 (324)
++++++|.||.+.|+++|.++|+++|+++++|+++ .+ ...+..+.++|++++|.|||++ +|| +|.++.++.. .
T Consensus 176 ~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG---~~l~v~~~~~-~ 251 (406)
T TIGR01814 176 LLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG---AGAFVHEKHA-H 251 (406)
T ss_pred EEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC---eEEEEehhhh-h
Confidence 99999999999999999999999999999999998 22 3344456689999999999985 444 3544444332 2
Q ss_pred HHHHhhhhh-------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhC-C-
Q 020548 145 SMMDLHQGA-------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKL-G- 198 (324)
Q Consensus 145 ~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~-~- 198 (324)
.+.+...++ ..+..+++.....+.+...++ .++...++..+..+++.+.|++. +
T Consensus 252 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~ 331 (406)
T TIGR01814 252 TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGG 331 (406)
T ss_pred hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 232211100 000112333222222211221 23445556678888888888774 2
Q ss_pred ---CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 199 ---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 199 ---~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
.++..|.-+ ..++++++|.++ .....+.+.|.. .|+.. +
T Consensus 332 ~~~~~i~~~~~~---------------~~r~~~v~~~~~--~~~~~~~~~L~~---~gi~v-~----------------- 373 (406)
T TIGR01814 332 PPVLTIITPRDH---------------AQRGCQLSLTHP--VPGKAVFQALIK---RGVIG-D----------------- 373 (406)
T ss_pred CCceEEeCCCCh---------------hhcCCeEEEEec--CCHHHHHHHHHH---CCEEE-e-----------------
Confidence 344433210 024668888887 124456566553 23211 0
Q ss_pred CCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhh
Q 020548 276 ELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++.||+|+ + ..+++++++.+.++|+.+
T Consensus 374 ----------~~~~~~iRiS~~~-~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 374 ----------KREPSVIRVAPVP-LYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred ----------ccCCCeEEEechh-ccCCHHHHHHHHHHHHHH
Confidence 01136899999 7 789999999999888765
No 204
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.87 E-value=4.9e-20 Score=164.17 Aligned_cols=280 Identities=15% Similarity=0.133 Sum_probs=178.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|.++...+. ..|.++.+++.+ |++++++.+ ++++++|+++ |
T Consensus 44 ~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~ 114 (352)
T cd00616 44 AALHLALRALGIGPGDEVIVPSFTFVATANAIL-----LLGATPVFVDIDPDTYNIDPELIEAAI-TPRTKAIIPV---H 114 (352)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCeEEEEecCCCcCCcCHHHHHHhc-CcCCeEEEEE---C
Confidence 4678888887 5899999999999999988774 267888777653 789999998 7889999976 4
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc--cCCCCcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP--ARLGADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~--~~~~~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
++|...|+++|.++|+++|+++|+|++|+ +..... .....|+.+.|++ |+++++ . ||+++.+ +++.+.++.
T Consensus 115 ~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~--~-gg~~~~~~~~~~~~~~~ 191 (352)
T cd00616 115 LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTG--E-GGAVVTNDEELAERARL 191 (352)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCccc--C-ceEEEECCHHHHHHHHH
Confidence 78999999999999999999999999983 222221 2223588898876 998543 3 5777654 678777765
Q ss_pred hhhhhhh---------c--cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHH
Q 020548 149 LHQGALM---------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 149 ~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~ 216 (324)
...+... . ....+....++..+..+..++...++..++.+++.+.|++.+ .++..+.-..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~-------- 263 (352)
T cd00616 192 LRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGV-------- 263 (352)
T ss_pred HHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCC--------
Confidence 5431100 0 112344444544444445566677777889999999998864 4443332000
Q ss_pred HHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceecccccccc--CCCCHHHHHhcCCCCCeE
Q 020548 217 SMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLV 292 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i 292 (324)
.....++.|.+++ ......+.+.|.. .|+ ..+.......+...... ............+..+.+
T Consensus 264 ------~~~~~~~~~~~~~~~~~~~~~v~~~L~~---~gI---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 331 (352)
T cd00616 264 ------KHSYHLYVIRLDPEAGESRDELIEALKE---AGI---ETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVL 331 (352)
T ss_pred ------ceeeEEEEEEECCcCCCCHHHHHHHHHH---CCC---CeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeE
Confidence 0134578888863 3456677777764 233 22211111100000000 000000000001124789
Q ss_pred EEEeccCCCHHHHHHHHHHHHH
Q 020548 293 RMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~ 314 (324)
|++++ ..+++++++.+.++|+
T Consensus 332 ~l~~~-~~~t~~di~~i~~~l~ 352 (352)
T cd00616 332 SLPLH-PSLTEEEIDRVIEALR 352 (352)
T ss_pred EccCC-CCCCHHHHHHHHHHhC
Confidence 99999 8999999999988763
No 205
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.86 E-value=4.9e-20 Score=164.18 Aligned_cols=259 Identities=16% Similarity=0.146 Sum_probs=165.6
Q ss_pred chHHHHHHHcc----CCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC----SSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~----~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++.++. ++| ++|+++..+|+++...+... .. .|++++.++.+ |++++++++ ++++++|++++
T Consensus 70 ~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~ 146 (353)
T TIGR03235 70 ESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRAL-ER-NGFTVTYLPVDESGRIDVDELADAI-RPDTLLVSIMH 146 (353)
T ss_pred HHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhC-CCCCEEEEEEc
Confidence 35666777664 356 78999999999888777543 23 68888887753 899999999 77899999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH--HH
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS--MM 147 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~--l~ 147 (324)
++||||.+.|+++|.++|+++|+++++|+++ +....+..+.++|++++|++|+++++| .|+++.+++.... +.
T Consensus 147 ~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g---~g~l~~~~~~~~~~~~~ 223 (353)
T TIGR03235 147 VNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKG---IGALVIRKRGKPKAPLK 223 (353)
T ss_pred ccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCc---eEEEEEccCcccccccC
Confidence 9999999999999999999999999999997 333344445689999999999987655 4888777654322 22
Q ss_pred Hhhhh--h-hhccCCCCCHHHHHH---HhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 148 DLHQG--A-LMLLGPTMNPKVAFE---LSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 148 ~~~~~--~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+...+ . .....+++....... ++.. ....+...+++.++++.+.+.|++.+.++..+.-.
T Consensus 224 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~------------- 290 (353)
T TIGR03235 224 PIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAE------------- 290 (353)
T ss_pred ceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCccc-------------
Confidence 11110 0 001112222111111 1111 12345666778889999999998866665433200
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC----CeEEEEe
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSV 296 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iR~s~ 296 (324)
...+++.|.+++. +...+...|.. + +.++.|..++ ... ......+.++|.++ +.+|+|+
T Consensus 291 ---~~~~i~~~~~~~~-~~~~v~~~L~~----~-i~v~~g~~~~------~~~--~~~~~~l~~~g~~~~~~~~~~r~s~ 353 (353)
T TIGR03235 291 ---TIPHILNFSIDGV-NSEALIVNLRA----D-AAVSTGSACS------SSK--YEPSHVLQAMGLDTDRARGAIRFSW 353 (353)
T ss_pred ---ccCCEEEEEeCCc-CHHHHHHHHhC----C-eEEEchhhcC------CCC--CCCCHHHHHcCCCHHHhCccEEEeC
Confidence 1345788887642 34455555542 1 2444443321 111 11224556667753 6788875
No 206
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.86 E-value=1e-19 Score=165.69 Aligned_cols=275 Identities=16% Similarity=0.094 Sum_probs=172.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhc---CC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQ---GR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~---~~ 63 (324)
+|+..+++++++||| |++++|.|..+...+. ..|.+++.++. .|+++|++.+.. ++
T Consensus 104 ~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~-----~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~ 177 (460)
T PRK13238 104 AAEQILFPVLIKKGD-VVPSNYHFDTTRAHIE-----LNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAEN 177 (460)
T ss_pred HHHHHHHHHhCCCCC-EEccCCcccchHHHHH-----HcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCc
Confidence 477888889999999 9999999998887663 36777666653 378999999832 47
Q ss_pred ceEEEEecCCCCcc-cccC---hHHHHHHHHhcCCEEEEcCCC-Cc-CCC--------CccC---------CCCcEEEeC
Q 020548 64 TKVLYFESISNPTL-AVAN---IPELSRLAHDKGVTVVVDNTF-SP-LVL--------SPAR---------LGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~nptG-~~~~---~~~i~~l~~~~~~~~ivD~~~-~~-~~~--------~~~~---------~~~d~~~~S 120 (324)
+++|++++|+||+| .+.+ +++|+++|+++|+++|.|+++ .+ ..+ .... ...|.++.|
T Consensus 178 tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~S 257 (460)
T PRK13238 178 VPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMS 257 (460)
T ss_pred eeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEe
Confidence 99999999999998 7754 679999999999999999976 21 111 1111 137899999
Q ss_pred CccccccCCCeeEEEEEcC-hhHHHHHHHhhh---hhhhccCCCCC-HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 121 ISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ---GALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
.+|...++. ||+++.+ +++.+.++.... +..+.++.+.. +.+++..+.... -+...+...+++++|.+.|+
T Consensus 258 g~K~g~~~~---GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~-~~~~~~~~~~~~~~l~~~L~ 333 (460)
T PRK13238 258 AKKDAMVNI---GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM-DEDYLAYRIGQVEYLGEGLE 333 (460)
T ss_pred cccCCCCcc---eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-ChHHHHHHHHHHHHHHHHHH
Confidence 999765543 6888877 688888876642 11122222222 112221222110 11333344556899999999
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH--------HHHHHHHHHhhccccccccccccCCccceec
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~ 267 (324)
+.|+.+..|. +|.++.+++... .....|+.+|-. +.|+.++..|.+...
T Consensus 334 ~~G~~~~~p~-------------------Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~--e~GV~~~~~~~f~~~-- 390 (460)
T PRK13238 334 EAGVPIQTPA-------------------GGHAVFVDAGKFLPHIPAEQFPAQALACELYL--EAGIRGVEIGSLLLG-- 390 (460)
T ss_pred HCCCCeEccC-------------------CceEEEEEchhcCCCCCCCCCchHHHHHHHHH--HcCeeeecccceecc--
Confidence 9998777666 556666666421 123556666553 355433333322111
Q ss_pred cccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 268 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
....... ...-+.+++||.+-+.--+++.++.+.++|..+.+
T Consensus 391 -~~~~~~~--------~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 391 -RDPKTGE--------QLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred -cCCCCcc--------ccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 0000000 00112489999998222355667888888877753
No 207
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.86 E-value=6.7e-20 Score=168.25 Aligned_cols=264 Identities=17% Similarity=0.186 Sum_probs=174.4
Q ss_pred hHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
++..++.++ .++||+|+++++.|+++...++.+... .|.+++.++.+ |++++++++ ++++++|++++| |+||
T Consensus 141 ~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-~G~~~~~v~~~~~~~d~~~l~~~i-~~~t~~v~l~~p-n~tG 217 (447)
T PRK00451 141 LAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKG-QGIEVVEVPYEDGVTDLEALEAAV-DDDTAAVVVQYP-NFFG 217 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHh-CCcEEEEecCCCCCCCHHHHHHhc-CCCeEEEEEECC-CCCC
Confidence 456666666 378999999999999999888654444 68888888765 899999999 889999999999 8999
Q ss_pred cccChHHHHHHHHhcCCEEEE--cCCCCcCCCCccCCCCcEEEeCCccc---cccCCCeeEEEEEcChhHHHHHHHh---
Q 020548 78 AVANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKF---ISGGADIIAGAVCGPANLVNSMMDL--- 149 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~---~~~~g~r~~G~i~~~~~~~~~l~~~--- 149 (324)
.+.|+++|.++|+++|+++++ |.+..+....+.+.++|++++|.+|+ +...|+++ ||++.++++.+.+...
T Consensus 218 ~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~-G~l~~~~~~~~~~~~~~~g 296 (447)
T PRK00451 218 VIEDLEEIAEIAHAGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPYL-GFFATRKKLVRQMPGRLVG 296 (447)
T ss_pred eeCCHHHHHHHHHHCCCEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCCCc-hHHHhhHHHHhhCCCCEee
Confidence 999999999999999999988 65543333445677999999976664 44445565 9998888887764211
Q ss_pred ----------------------hhhhhhccCCCCCH---HHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhCCC-ce
Q 020548 150 ----------------------HQGALMLLGPTMNP---KVAFELS--ERIPHLGLRMKEHCHRALIFARRMKKLGL-KV 201 (324)
Q Consensus 150 ----------------------~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~ 201 (324)
.....+...+.... ..++..+ .....+++..+++.++++++.+.|++.+. ++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~ 376 (447)
T PRK00451 297 ETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL 376 (447)
T ss_pred eecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe
Confidence 00000011111111 2222111 12234667778889999999999998853 44
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHH
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 281 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 281 (324)
. +. ....++.+.++. ...++.++|.. .|+.+ + .+...+.
T Consensus 377 ~-~~------------------~~~~~~~v~~~~--~~~~~~~~L~~---~gi~~---~-------~~~~~~~------- 415 (447)
T PRK00451 377 F-DG------------------PFFNEFVVRLPK--PAEEVNEALLE---KGILG---G-------YDLGRYY------- 415 (447)
T ss_pred c-CC------------------CeEEEEEEecCC--CHHHHHHHHHh---cCCCC---C-------ccccccc-------
Confidence 2 11 011123345431 24567777764 23211 0 0001000
Q ss_pred HHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 282 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 282 ~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+. .+.+|+|++ ..+++++++.+.++|+++
T Consensus 416 ---~~~-~~~~rvs~~-~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 416 ---PEL-GNHLLVCVT-EKRTKEDIDALVAALGEV 445 (447)
T ss_pred ---CCc-CCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 011 368999999 888999999999998765
No 208
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.86 E-value=5.6e-20 Score=166.35 Aligned_cols=259 Identities=16% Similarity=0.177 Sum_probs=163.5
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcC------c--ccceeEEEecCCCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFP------R--ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~------~--~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..+++....+| ++|+..++.|++.......... . ..+..+..++..|++++++.+ ++++++|+++++
T Consensus 114 ea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~aviiep~ 192 (398)
T PRK03244 114 EANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV-DDDTAAVFLEPI 192 (398)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh-cCCeEEEEEecc
Confidence 45666776555565 5778888899876433321100 0 012344556666899999998 778999999999
Q ss_pred CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 73 SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 73 ~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+||+|.+.| +++|.++|++||+++|+||+|+++... ......|++ +++|+++ +|.|+ |+++.+++
T Consensus 193 ~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~-~G~~i-g~~~~~~~ 268 (398)
T PRK03244 193 QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLG-GGLPI-GACLAFGP 268 (398)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhh-CCccc-EEEEEcHH
Confidence 999999986 889999999999999999999665321 112246765 5899998 58997 99999988
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
+++.+..... ..++.++.+.+.++...+..+. -+...++..++.+++.+.|++.+.... . .
T Consensus 269 ~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~--~---------------~ 329 (398)
T PRK03244 269 AADLLTPGLH-GSTFGGNPVACAAALAVLDTIA-SEGLLENAERLGEQLRAGIEALGHPLV--D---------------H 329 (398)
T ss_pred HHhhccCCCC-cCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCCce--e---------------e
Confidence 8877754322 1122222222222222222121 123455667778888999987643111 0 1
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
..+.|.+++++++.. ....+.+.+.. .|++ +.+ ...+.+|++++ ...
T Consensus 330 v~g~g~~~~i~~~~~-~~~~~~~~l~~---~Gv~-----------~~~-----------------~~~~~iR~~p~-~~~ 376 (398)
T PRK03244 330 VRGRGLLLGIVLTAP-VAKAVEAAARE---AGFL-----------VNA-----------------VAPDVIRLAPP-LII 376 (398)
T ss_pred EeeccEEEEEEEecc-HHHHHHHHHHH---CCeE-----------Eee-----------------cCCCEEEEECC-CcC
Confidence 114688999999642 45667766663 3331 111 01378999988 655
Q ss_pred HHHHHHHHHHHHHhhh
Q 020548 302 LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~~ 317 (324)
++++++.+.++|+++-
T Consensus 377 t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 377 TDAQVDAFVAALPAIL 392 (398)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5666666666665543
No 209
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.85 E-value=2.1e-19 Score=162.85 Aligned_cols=256 Identities=16% Similarity=0.229 Sum_probs=165.5
Q ss_pred chHHHHHHHccC---------CC-CEEEEcCCCchhHHHHHhhh---------cCcccceeEEEecCCCHHHHHHhhhcC
Q 020548 2 SAISSVLMQLCS---------SG-GHVVAARTLYGGTHALLTHF---------FPRACNITTTFVDISDHEMVNSAIVQG 62 (324)
Q Consensus 2 ~ai~~~~~~~~~---------~g-d~vl~~~p~y~~~~~~~~~~---------~~~~~g~~~~~~~~~d~~~l~~~l~~~ 62 (324)
+|+..++..+.. +| ++|++....|++....+... ... ....+..++..|++++++.+ .+
T Consensus 109 ~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~i-~~ 186 (401)
T PRK00854 109 EAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGP-FTPGFRVVPFGDAEALEAAI-TP 186 (401)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCC-CCCCeEEeCCCCHHHHHHHh-CC
Confidence 356666665421 24 68888888887754332111 000 12345566677999999999 78
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCe
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADI 131 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r 131 (324)
++++|++++|+||+|.+.| +++|+++|++||+++|+||+|.++...+ .....|+++ ++|++++..++
T Consensus 187 ~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~--~~K~l~gg~~~ 264 (401)
T PRK00854 187 NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTL--IGKALSGGFYP 264 (401)
T ss_pred CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEE--ecccccCCccC
Confidence 8999999999999999986 9999999999999999999997664432 223568887 46999885578
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLEDH 209 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~ 209 (324)
+ |++++++++++.+..... ..+++ + .+..++..+..++.+. ...++++++.+++.+.|++.+.... .
T Consensus 265 i-g~v~~~~~~~~~l~~~~~-~~t~~-~--~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~---- 333 (401)
T PRK00854 265 V-SAVLSNSEVLGVLKPGQH-GSTFG-G--NPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSNIV--R---- 333 (401)
T ss_pred e-EEEEEcHHHHhcccCCCC-CCCCC-c--CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhccCce--E----
Confidence 6 999999998887754322 11122 2 3333333333333332 2456678888999999988654211 0
Q ss_pred chhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
...+.|.++.+.+. +......+.+.+.. .|+.. .+ ..
T Consensus 334 -----------~~~g~g~~~~i~~~~~~~~~~~~~~~L~~---~GV~v-----------~~-----------------~~ 371 (401)
T PRK00854 334 -----------EVRGRGLMLAVELEPEAGGARQYCEALKE---RGLLA-----------KD-----------------TH 371 (401)
T ss_pred -----------EEeccceEEEEEEecCchhHHHHHHHHHH---CCeEE-----------ec-----------------CC
Confidence 01145778888774 33346677777764 33311 00 11
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+|+++. ...+++.++.+.+.|+.
T Consensus 372 ~~~lR~~p~-~~~t~e~i~~~i~~l~~ 397 (401)
T PRK00854 372 DHTIRLAPP-LVITREQVDWALEQIAK 397 (401)
T ss_pred CCEEEEeCC-cccCHHHHHHHHHHHHH
Confidence 368999998 66666666666665554
No 210
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.85 E-value=2.1e-19 Score=163.52 Aligned_cols=221 Identities=18% Similarity=0.214 Sum_probs=145.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh-cCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++++|||+|+++.|+|+++....... ... .|.++..++. .|++++++++.+.++++|+++.++
T Consensus 98 ~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~- 175 (416)
T PRK00011 98 QANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA- 175 (416)
T ss_pred HHHHHHHHHhcCCCCEEEEeccccCCcccccccccccc-ceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc-
Confidence 4677888888999999999999998754322111 111 3556666553 279999999943578999887544
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
+|...|+++|.++|+++|+++|+|++| .+.. ..+.. +.|++++|+||+++ |.+ ||+++.+ +++.+.+.
T Consensus 176 -~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~--g~~-gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 176 -YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLR--GPR-GGLILTNDEELAKKIN 250 (416)
T ss_pred -CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCC--CCC-ceEEEeCCHHHHHHHH
Confidence 456679999999999999999999997 3332 12334 68999999999884 455 5999885 68888887
Q ss_pred HhhhhhhhccCCCCCHHHHH-HHh-cCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAF-ELS-ERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ....+......+. .+. ..+ ..++.+.+++.++++++.+.|++.|+++. +. . .
T Consensus 251 ~~~~~~-~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~--~---------------~ 311 (416)
T PRK00011 251 SAVFPG-IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVV-SG--G---------------T 311 (416)
T ss_pred HHhCcc-ccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeee-ec--C---------------C
Confidence 654411 1111111122221 111 111 23566778889999999999999876543 21 0 1
Q ss_pred cceEEEEEeCCH-HHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETE-EKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~-~~~~~~~~~l~~ 248 (324)
.++++++.+++. .....+.+.|..
T Consensus 312 ~~~~~~i~~~~~~~~~~~~~~~L~~ 336 (416)
T PRK00011 312 DNHLVLVDLRSKGLTGKEAEAALEE 336 (416)
T ss_pred CCeEEEEeCcccCCCHHHHHHHHHH
Confidence 246888888522 134456666653
No 211
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.85 E-value=1.8e-19 Score=162.74 Aligned_cols=244 Identities=13% Similarity=0.157 Sum_probs=154.8
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc-----ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR-----ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~-----~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
++|+..+..|++........... .++ ..+..++..|++++++.+ ++++++|++++++||+|.+.+ ++
T Consensus 132 ~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~viiep~~~~~G~~~~~~~~l~ 210 (396)
T PRK04073 132 AEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI-TPNTAAFLVEPIQGEAGINIPPEGFLK 210 (396)
T ss_pred CEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhc-ccCeEEEEEcCccCCCCCccCCHHHHH
Confidence 78888888787644222111000 000 113455666899999999 788999999999999999975 78
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
+|.++|+++|+++|+||+|.++... ......|+++ ++|.++++++|+ |++++++++++.+..... ..++
T Consensus 211 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~--~sK~lg~gg~~i-g~~~~~~~i~~~~~~~~~-~~t~ 286 (396)
T PRK04073 211 AARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYI--LGKALGGGVFPI-SCVAANRDILGVFTPGSH-GSTF 286 (396)
T ss_pred HHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEE--ecccccCCCCcc-eEEEEcHHHHhhhcCCCC-CCCC
Confidence 9999999999999999999766421 1222456665 799999988997 999999998888754332 1122
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
+++.+.+.++...+..+.. +...++..++++++.+.|++.+..... ...+.|.++.++++.
T Consensus 287 ~~~~~~~aaa~aaL~~~~~-~~l~~~~~~~~~~l~~~L~~l~~~~i~-----------------~~~~~g~~~~~~~~~- 347 (396)
T PRK04073 287 GGNPLACAVSIAALEVLEE-EKLPERSLELGEYFKEQLKEIDNPMIK-----------------EVRGRGLFIGVELNE- 347 (396)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhhcCCccc-----------------ceecceEEEEEEecc-
Confidence 3332222222222221111 133455677788888888876431110 011467888888863
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
....+.+.+.. .|++. .+ ..+++||+++. ...++++++.+.++|+++
T Consensus 348 -~~~~~~~~l~~---~Gv~~-----------~~-----------------~~~~~iRi~p~-l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 348 -PARPYCEALKE---EGLLC-----------KE-----------------THETVIRFAPP-LVITKEELDWAFEKIKAV 394 (396)
T ss_pred -hHHHHHHHHHH---CCeEE-----------ec-----------------CCCCEEEEECC-cccCHHHHHHHHHHHHHH
Confidence 34567776653 33311 11 11368999987 666777677766666543
No 212
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.84 E-value=7.1e-20 Score=158.59 Aligned_cols=133 Identities=19% Similarity=0.251 Sum_probs=116.2
Q ss_pred chHHHHHHHcc-CCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC-SSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|++++++.+. ..+| +|+..+..|+.....++.+.. .|.++++++.. |++.+++.+ +++|++|.+.+
T Consensus 113 Es~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~--~g~~Vt~lpv~~~~~~d~~~~~~~i-~~~T~lv~I~~ 189 (428)
T KOG1549|consen 113 ESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQE--EGLEVTYLPVEDSGLVDISKLREAI-RSKTRLVSIMH 189 (428)
T ss_pred HHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHh--cCeEEEEeccCccccccHHHHHHhc-CCCceEEEEEe
Confidence 46788888763 3566 999999999999998876655 47999998875 899999999 99999999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++|.+|.++|+++|.++|+++|+.+++|.+| +....+..++++|++..|.|||||++| + |+++.++
T Consensus 190 Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~--i-GaLYvr~ 257 (428)
T KOG1549|consen 190 VNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPG--I-GALYVRR 257 (428)
T ss_pred cccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCc--c-eEEEEcc
Confidence 9999999999999999999999999999998 445567788899999999999999988 4 9998775
No 213
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.84 E-value=1.9e-18 Score=155.08 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=172.8
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+++|.|+.....|.+....++.. ....+.++..++.+|+++|++.++. .+.++|+++...++.|.+.|+++|.++|+
T Consensus 198 ~~~d~i~~D~~~HaSI~dG~~ls-~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~ 276 (476)
T PLN02955 198 NEKVAIFSDALNHASIIDGVRLA-ERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRK 276 (476)
T ss_pred CCCcEEEEeccchHHHHHHHHhc-cccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 45678888888898888877422 1112467777788899999998843 34578888999999999999999999999
Q ss_pred hcCCEEEEcCCCCcCCCCc----------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCC
Q 020548 91 DKGVTVVVDNTFSPLVLSP----------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 160 (324)
Q Consensus 91 ~~~~~~ivD~~~~~~~~~~----------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~ 160 (324)
+||+++|+||+++.+...+ ..-+.|++++|++|.+|.. ||++++++++++.++.....+ .+.++.
T Consensus 277 ~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~----GGfi~gs~~~~~~l~~~~~~~-ifStal 351 (476)
T PLN02955 277 KYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH----GGFIACSKKWKQLIQSRGRSF-IFSTAI 351 (476)
T ss_pred HcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc----CceeecHHHHHHHHHHhCCCC-eecccc
Confidence 9999999999985443221 1125789999999999876 599999999998888655422 222333
Q ss_pred CCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 161 MNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
+.+..++ .+..+. .-+.+++++.++.+++.+. .|+.+ .++++.+.+.+..
T Consensus 352 pp~~aaa-~laal~l~~~~~~~r~~L~~n~~~fr~~---~G~~~-----------------------~sPI~pI~ig~~~ 404 (476)
T PLN02955 352 PVPMAAA-AYAAVVVARKEKWRRKAIWERVKEFKAL---SGVDI-----------------------SSPIISLVVGNQE 404 (476)
T ss_pred cHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCC-----------------------CCCEEEEEeCCHH
Confidence 3222222 222221 2224455566677766652 23321 2458899998878
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
.+..+.+.|.. .| -+.+.+.+|..+. ....+|+++. ...++++++.+.++|..+.
T Consensus 405 ~a~~~~~~L~~---~G-------i~v~~i~yPtVP~--------------g~~rLRi~ls-A~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 405 KALKASRYLLK---SG-------FHVMAIRPPTVPP--------------NSCRLRVTLS-AAHTTEDVKKLITALSSCL 459 (476)
T ss_pred HHHHHHHHHHH---CC-------CEEEEECCCCCCC--------------CCceEEEeeC-CCCCHHHHHHHHHHHHHHH
Confidence 88888888874 33 3344455565432 2357999999 9999999999999998775
Q ss_pred hc
Q 020548 318 DS 319 (324)
Q Consensus 318 ~~ 319 (324)
+.
T Consensus 460 ~~ 461 (476)
T PLN02955 460 DF 461 (476)
T ss_pred hh
Confidence 43
No 214
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.84 E-value=1.7e-19 Score=164.17 Aligned_cols=261 Identities=14% Similarity=0.177 Sum_probs=161.8
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCC-----------CHHHHHHhhh
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDIS-----------DHEMVNSAIV 60 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~-----------d~~~l~~~l~ 60 (324)
+|+..++..+ ..++|+|++.++.|++........... ....++..++.+ |++++++.+.
T Consensus 107 ea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 186 (413)
T cd00610 107 EAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE 186 (413)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence 3566666654 256899999999999865544222111 012234555555 7899999884
Q ss_pred c--CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCcccccc
Q 020548 61 Q--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISG 127 (324)
Q Consensus 61 ~--~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~ 127 (324)
. ++++++++++.+|++|...+ +++|.++|+++|+++|+||+|+++... ......|+ .|++|++++
T Consensus 187 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~--~t~sK~l~~ 264 (413)
T cd00610 187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI--VTLGKGLGG 264 (413)
T ss_pred cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCe--EEEcccccC
Confidence 3 36889999999999999876 999999999999999999999665211 11223454 468899988
Q ss_pred CCCeeEEEEEcChhHHHHH--HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 128 GADIIAGAVCGPANLVNSM--MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 128 ~g~r~~G~i~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
|.|+ |++++++++++.+ ..... ..+..++.+.+.++...++.+.. ....++..++.+++.+.|++.......+.
T Consensus 265 -g~~~-g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~a~~a~l~~l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 340 (413)
T cd00610 265 -GLPL-GAVLGREEIMDAFPAGPGLH-GGTFGGNPLACAAALAVLEVLEE-EGLLENAAELGEYLRERLRELAEKHPLVG 340 (413)
T ss_pred -cccc-EEEEEcHHHHHhhccCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCcEE
Confidence 7997 9999999888886 22211 11122222222222222221111 23456667778888888876532110011
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCH--------HHHHHHHHHhhccccccccccccCCccceeccccccccCCC
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 277 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 277 (324)
...+.|+++++.+++. .....+.+.+.. .|+ .+.|.
T Consensus 341 ---------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gv-----------~v~~~------- 384 (413)
T cd00610 341 ---------------DVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE---RGL-----------LLRPS------- 384 (413)
T ss_pred ---------------EeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH---CCe-----------EEeec-------
Confidence 0114688999998642 456677777664 333 11111
Q ss_pred CHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 278 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 278 ~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
..+.+|+++. ...+++.++.+.++++.
T Consensus 385 ----------~~~~lR~~~~-~~~t~~~i~~~~~~l~~ 411 (413)
T cd00610 385 ----------GGNVIRLLPP-LIITEEEIDEGLDALDE 411 (413)
T ss_pred ----------CCCEEEEECC-CcCCHHHHHHHHHHHHH
Confidence 1367999999 77666666666666654
No 215
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.83 E-value=1.3e-18 Score=156.25 Aligned_cols=252 Identities=14% Similarity=0.132 Sum_probs=158.8
Q ss_pred CCEEEEcCCCchhHHHHHh--hhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 15 GGHVVAARTLYGGTHALLT--HFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~--~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
||+|+..++..+++...-. .+... ......++. .|.+++++.+ +++++.|+++..+|- +...|+++|+
T Consensus 166 gd~i~~l~l~~GGHlthg~~~n~~~~--~~~~~~y~vd~~~g~iD~d~l~~~~-~~~~plvii~g~S~~-~~~~dl~~i~ 241 (493)
T PRK13580 166 NQRLLGMSLDSGGHLTHGFRPNISGK--MFHQRSYGVDPDTGLLDYDEIAALA-REFKPLILVAGYSAY-PRRVNFAKLR 241 (493)
T ss_pred CCEEEeecCCCCCeeecCcccchhhh--eeeeEecccCcccCccCHHHHHHHH-hhcCCEEEEeCcccc-CCCcCHHHHH
Confidence 8999999877765533210 11111 122222222 2899999999 778888888888887 5577999999
Q ss_pred HHHHhcCCEEEEcCCC-CcCCC--------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 87 RLAHDKGVTVVVDNTF-SPLVL--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~-~~~~~--------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
++|+++|+++++|+++ .++.. ++. .++|++++|+||++.||. ||++++++++.+.+.....+ ..
T Consensus 242 eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P~---i~ 314 (493)
T PRK13580 242 EIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCPL---VL 314 (493)
T ss_pred HHHHHcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCCc---cc
Confidence 9999999999999998 44321 222 268999999999996554 79999999988888544331 33
Q ss_pred CCCCCHHHHHHH--hcCcc--cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 158 GPTMNPKVAFEL--SERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 158 ~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
++.+.+..++.+ +.... ....+.++..+|++.|.+.|++.|+.+.... ..+.++.+.+
T Consensus 315 gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~gg------------------TdshIV~V~l 376 (493)
T PRK13580 315 GGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGG------------------TDNHLVLIDV 376 (493)
T ss_pred CCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCC------------------CCCCEEEEEe
Confidence 333333333222 21111 2345777889999999999999998654222 1245889999
Q ss_pred CCHHHH-HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC----HHHHHHH
Q 020548 234 ETEEKA-NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQ 308 (324)
Q Consensus 234 ~~~~~~-~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~----~~~~~~~ 308 (324)
.+.... ..+.+.|.. .|+ +...+..|..+.. ......||++.. ..+ .+++++.
T Consensus 377 g~~~~~g~~a~~~L~e---~GI-------~vn~i~~Ptvp~g-----------~~~~srLRIg~~-A~ttrg~teedi~~ 434 (493)
T PRK13580 377 TSFGLTGRQAESALLD---AGI-------VTNRNSIPSDPNG-----------AWYTSGIRLGTP-ALTTLGMGSDEMDE 434 (493)
T ss_pred CCHHHHHHHHHHHHHH---CCe-------EEccccCCCCCCC-----------CCCCceEEeccc-hhhhcCCCHHHHHH
Confidence 754433 344445553 232 2233334443221 112467999987 532 3566777
Q ss_pred HHHHHHhhh
Q 020548 309 FEKALSRMQ 317 (324)
Q Consensus 309 l~~~l~~~~ 317 (324)
+.+++..+.
T Consensus 435 iad~l~~~l 443 (493)
T PRK13580 435 VAELIVKVL 443 (493)
T ss_pred HHHHHHHHH
Confidence 776665543
No 216
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.83 E-value=7.2e-19 Score=158.27 Aligned_cols=245 Identities=15% Similarity=0.178 Sum_probs=152.9
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc----C
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----N 81 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~----~ 81 (324)
+||+|++++|+|+++.......... .......+++.+|++++++.+ ++++++|++++++|++|... +
T Consensus 114 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~p~~~~~g~~~~~~~~ 192 (379)
T TIGR00707 114 EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAI-DDETAAVIVEPIQGEGGVNPASAEF 192 (379)
T ss_pred CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHh-hhCeeEEEEEccccCCCCccCCHHH
Confidence 3799999999998765443211100 011123344445899999999 77899999988888888653 3
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 154 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~ 154 (324)
+++|.++|+++|+++|+||+|.++... + .....|++ ++||.++ +|+|+ ||+++++++++.+..... ..
T Consensus 193 l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~ri-G~~~~~~~~~~~~~~~~~-~~ 267 (379)
T TIGR00707 193 LKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPI-GATLAKEEVAEAFTPGDH-GS 267 (379)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEccccc-CCccc-EEEEEcHHHHhhhcCCCC-CC
Confidence 789999999999999999999666432 1 11234554 6899998 79997 999999998888865432 11
Q ss_pred hccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 155 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+.++.+.+.++...+..+. .....+++.++++.+.+.|++.+........ .+.|.++++.++
T Consensus 268 ~~~~~~~~~~aa~aaL~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~~g~~~~~~~~ 330 (379)
T TIGR00707 268 TFGGNPLACAAALAVLEVIE-KERLLENVKEKGDYFKERLEELGKNYPNKEV----------------RGKGLMLGIELE 330 (379)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc----------------ccCceEEEEEec
Confidence 12222233333322332221 1234566677888888888876432211110 125778999986
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+. ...+.+.+.. .|+. +.|. ..+++|+|++ ...+++.++.+.++|+
T Consensus 331 ~~--~~~~~~~l~~---~Gv~-----------v~~~-----------------~~~~lRi~~~-~~~t~~~i~~~~~~l~ 376 (379)
T TIGR00707 331 AP--CKDIVKKALE---KGLL-----------VNCA-----------------GPKVLRFLPP-LIITKEEIDEAVSALE 376 (379)
T ss_pred Cc--HHHHHHHHHH---CCcE-----------EeeC-----------------CCCEEEEECC-CcCCHHHHHHHHHHHH
Confidence 42 4566666663 3331 1111 1378999988 6556665666665554
Q ss_pred h
Q 020548 315 R 315 (324)
Q Consensus 315 ~ 315 (324)
+
T Consensus 377 ~ 377 (379)
T TIGR00707 377 E 377 (379)
T ss_pred H
Confidence 3
No 217
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.83 E-value=9.9e-19 Score=157.19 Aligned_cols=279 Identities=17% Similarity=0.197 Sum_probs=176.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc----CCceEEEEe
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~----~~~~~v~~~ 70 (324)
+|+..++.++ +++||+|++++++|.++...+. ..|.++++++.+ |++++++++ + +++++|++.
T Consensus 55 ~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~~t~~v~~~ 128 (380)
T TIGR03588 55 SALHIACLALGVGPGDRVWTTPITFVATANCAL-----YCGAKVDFVDIDPDTGNIDEDALEKKL-AAAKGKLPKAIVPV 128 (380)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHHh-hcccCCCceEEEEe
Confidence 5788888888 7899999999999999877663 378888888762 789999999 6 688998854
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCC----cEEEeCCc--cccccCCCeeEEEEE-cChhH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA----DVVVHSIS--KFISGGADIIAGAVC-GPANL 142 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~----d~~~~S~s--K~~~~~g~r~~G~i~-~~~~~ 142 (324)
|++|...++++|.++|+++|+++|+|++++ +...+....+. |+.++|+| |+++.+. ||+++ .++++
T Consensus 129 ---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~---GG~v~~~~~~~ 202 (380)
T TIGR03588 129 ---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAE---GGAVTTNDEEL 202 (380)
T ss_pred ---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccC---ceEEEECCHHH
Confidence 578999999999999999999999999983 22233333345 99999987 8886543 57665 56778
Q ss_pred HHHHHHhhhhhhh-------------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-c
Q 020548 143 VNSMMDLHQGALM-------------------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-K 200 (324)
Q Consensus 143 ~~~l~~~~~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~ 200 (324)
.+.++....+... ..| ..+....++..+.++..++...++.+++++++.+.|...+. .
T Consensus 203 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 203 AERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred HHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 8877654331000 001 12344555554445566777778888999999999988764 2
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccc---cC
Q 020548 201 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST---SS 275 (324)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~ 275 (324)
...+..... ....++.+.++. .....++.+.|.. .|+ .+... +..+...|.... ..
T Consensus 283 ~~~~~~~~~--------------~~~~~~~i~~~~~~~~~r~~l~~~L~~---~gI-~~~~~-~~~~~~~~~~~~~~~~~ 343 (380)
T TIGR03588 283 PLTIPLGSK--------------SAWHLYPILLDQEFGCTRKEVFEALRA---AGI-GVQVH-YIPVHLQPYYRQGFGDG 343 (380)
T ss_pred CCCCCCCCE--------------eEEEEEEEEECCcCCCCHHHHHHHHHH---CCC-CcccC-CcccccChhhhccCCcC
Confidence 221110000 011233344431 1245666666664 333 22211 001101111000 00
Q ss_pred CCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 276 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++... .+..+.+++.++ ...++++++.+.++++++
T Consensus 344 ~~p~a~----~~~~~~l~lP~~-~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 344 DLPSAE----NFYLAEISLPLH-PALTLEQQQRVVETLRKV 379 (380)
T ss_pred CCcHHH----HHHhceEEcCCC-CCCCHHHHHHHHHHHHHh
Confidence 011111 122478999999 777788888888888754
No 218
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.83 E-value=1.9e-19 Score=159.93 Aligned_cols=222 Identities=15% Similarity=0.111 Sum_probs=153.1
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC------CceEEEEecCCCCcccccChHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~------~~~~v~~~~~~nptG~~~~~~~ 84 (324)
+.|++++++|.++...+. ..|.+++.++. .|++++++++ ++ ++++|++++++||||.+.|+++
T Consensus 96 ~~v~~~~~~h~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~ 169 (345)
T cd06450 96 LVIVCSDQAHVSVEKAAA-----YLDVKVRLVPVDEDGRMDPEALEAAI-DEDKAEGLNPIMVVATAGTTDTGAIDPLEE 169 (345)
T ss_pred eEEEEcCcchhHHHHHHH-----HHhcCeEEeeeCCCCCcCHHHHHHHH-HHHHHCCCCcEEEEEecccCCCCCCCCHHH
Confidence 478889999999887763 24677777664 2899999998 54 7889999999999999999999
Q ss_pred HHHHHHhcCCEEEEcCCCCcCCC--Ccc-----C-CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 85 LSRLAHDKGVTVVVDNTFSPLVL--SPA-----R-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 85 i~~l~~~~~~~~ivD~~~~~~~~--~~~-----~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
|+++|+++|+++++|++|+.+.. ... . .++|++..|+||++++| .++ |+++.+
T Consensus 170 i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~-g~~~~~----------------- 230 (345)
T cd06450 170 IADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGC-SAVLVR----------------- 230 (345)
T ss_pred HHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cch-HHHHHH-----------------
Confidence 99999999999999999944321 111 1 26899999999988653 453 776554
Q ss_pred cCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 157 LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
....+..+. ....++.++++..++++++.+.|++.+. .+..+. .++++.|.+
T Consensus 231 ------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~iv~f~~ 285 (345)
T cd06450 231 ------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-------------------NLSLVCFRL 285 (345)
T ss_pred ------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------------ceeEEEEEE
Confidence 111111111 1234566777788899999999998753 443322 356888888
Q ss_pred CC----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC-CHHHHHHH
Q 020548 234 ET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQ 308 (324)
Q Consensus 234 ~~----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~-~~~~~~~~ 308 (324)
++ ......+.+.+.. .|.+. .+... .+ .+.++|+|++ .. ++.++++.
T Consensus 286 ~~~~~~~~~~~~i~~~L~~---~g~~~-----------~~~~~------------~~-~~~~lRis~~-~~~~t~~di~~ 337 (345)
T cd06450 286 KPSVKLDELNYDLSDRLNE---RGGWH-----------VPATT------------LG-GPNVLRFVVT-NPLTTRDDADA 337 (345)
T ss_pred CCcchhhHHHHHHHHHHHh---cCCEE-----------EEeeE------------EC-CeEEEEEEec-CCCCCHHHHHH
Confidence 75 2455667777764 21100 11110 01 2468999999 75 48888888
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
+.++|++
T Consensus 338 l~~~l~~ 344 (345)
T cd06450 338 LLEDIER 344 (345)
T ss_pred HHHHHHh
Confidence 8888765
No 219
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.83 E-value=2.9e-18 Score=153.09 Aligned_cols=282 Identities=16% Similarity=0.189 Sum_probs=178.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ ++|||+|++++++|.++...+. . .|.++++++.+ |++++++++ ++++++|+ |+|
T Consensus 57 ~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~----~-~G~~~v~vd~d~~~~~~d~~~le~~i-~~~tk~Ii---p~~ 127 (376)
T TIGR02379 57 AALEMAALLLDIQPGDEVIMPSYTFVSTANAFV----L-RGAKIVFVDIRPDTMNIDETLIESAI-THRTKAIV---PVH 127 (376)
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH----H-cCCEEEEEecCCCcCCCCHHHHHHhc-CcCceEEE---EeC
Confidence 5777788877 8999999999999999887773 3 68888888764 788999999 78899987 567
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CCccCCC--CcEEEeCCc--cccccCCCeeEEEEE-cChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSIS--KFISGGADIIAGAVC-GPANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~~~~--~d~~~~S~s--K~~~~~g~r~~G~i~-~~~~~~~~l~~ 148 (324)
|+|...|+++|.++|+++|+++|+|++|+... .+....+ .|+.++|++ |.+.. |.+ ||+++ .++++.+.++.
T Consensus 128 ~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~-g~~-gG~v~~~~~~~~~~~~~ 205 (376)
T TIGR02379 128 YAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTS-GGE-GGALLINDQAFIERAEI 205 (376)
T ss_pred CCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCcc-cCC-ceEEEECCHHHHHHHHH
Confidence 89999999999999999999999999984332 3222233 377777774 55543 445 58765 45789998887
Q ss_pred hhhhhhh---------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCC
Q 020548 149 LHQGALM---------------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 209 (324)
Q Consensus 149 ~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~ 209 (324)
...+... ..| ..+....++..+.++..++...++.++++++..+.|+.... ....|..+..
T Consensus 206 ~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~ 285 (376)
T TIGR02379 206 IREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNG 285 (376)
T ss_pred HHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCC
Confidence 7642100 012 12445566666667777888888888888888888876542 1222332211
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccccc----CCCCHHHHHhc
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS----SELNAEEKALA 285 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ 285 (324)
.. ..-.++++.++...+..++.+.|.. .|+ .... .+..+...|....+ ...+..+
T Consensus 286 ~~------------~~~~~~~i~~~~~~~r~~l~~~L~~---~gI-~~~~-~~~p~~~~~~~~~~~~~~~~~p~~~---- 344 (376)
T TIGR02379 286 CQ------------HNAHMFYIKLKDEDDRNELIKYLKE---QEI-MAVF-HYVPLHSSPAGRYFGRFHGEDIYTT---- 344 (376)
T ss_pred Ce------------eeeEEEEEEECCcCCHHHHHHHHHH---CCC-Cccc-cCcCCCcchhHHhhCCCCCCChHHH----
Confidence 11 0113556777643345677777774 343 2111 11111111110000 0111111
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+..+.+.+=++ ..-+++.++.+.++++++
T Consensus 345 ~~~~~~l~LP~~-~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 345 KESERLVRLPLY-YGLSKEDQARVIQTICDY 374 (376)
T ss_pred HHHhceEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 112466777777 666777788888887664
No 220
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.83 E-value=2.1e-18 Score=154.66 Aligned_cols=278 Identities=17% Similarity=0.168 Sum_probs=176.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|++++++|.++...+. ..|.++++++.+ |++++++++ ++++++|+ |.|
T Consensus 59 ~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~v~vd~~~~~~~~d~~~l~~~i-~~~tkav~---~~~ 129 (379)
T PRK11658 59 AGMHITLMALGIGPGDEVITPSLTWVSTLNMIV-----LLGATPVMVDVDRDTLMVTPEAIEAAI-TPRTKAII---PVH 129 (379)
T ss_pred HHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHhc-ccCCeEEE---EeC
Confidence 5788888888 7999999999999999987763 378888888753 789999999 78899988 556
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCC---ccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS---PARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~---~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~ 149 (324)
++|...|+++|.++|+++|+++|+|++|+ +.... ....+.++..++.+|.+. ++. ||+++. ++++.+.++..
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~--~g~-GG~v~~~~~~~~~~~~~~ 206 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNIT--CAE-GGLVVTDDDELADRLRSL 206 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCc--ccC-ceEEEECCHHHHHHHHHH
Confidence 79999999999999999999999999983 33322 223355555555567664 445 688875 57888888765
Q ss_pred hhhhhh------------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCc-eeCCCCCC
Q 020548 150 HQGALM------------------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK-VLYPGLED 208 (324)
Q Consensus 150 ~~~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~p~~~~ 208 (324)
..+... ..| ..+..+.+++.+.++..+++..++.+++++++.+.|++.+.. +..|....
T Consensus 207 ~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~ 286 (379)
T PRK11658 207 KFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPH 286 (379)
T ss_pred HHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCC
Confidence 431000 011 224455566655566667777788888888999999877642 22222110
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC---HHHHHHHHHHhhccccccccccccCCcc-ceecccccc---ccCCCCHHH
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYE-TLMSCSGSS---TSSELNAEE 281 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~~~~~~g~~~-~~~~~~~~~---~~~~~~~~~ 281 (324)
. ....++.+.++. ......+.+.|.. .|+ ..+... .+...|... ....++..+
T Consensus 287 --~------------~~~~~~~~~~~~~~~~~~r~~~~~~L~~---~gI---~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 346 (379)
T PRK11658 287 --Q------------HAWHLFIIRVDEERCGISRDALMEALKE---RGI---GTGLHFRAAHTQKYYRERFPTLSLPNTE 346 (379)
T ss_pred --c------------eeEEEEEEEECCccccCCHHHHHHHHHH---CCC---CCcccCcCcccChhhhccCCCCCChHHH
Confidence 0 011345566542 2245677777764 343 122111 111111100 000111111
Q ss_pred HHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 282 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 282 ~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+..+.+-+-++ ..-+++.++.+.++++++
T Consensus 347 ----~~~~~~l~lP~~-~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 347 ----WNSERICSLPLF-PDMTDADVDRVITALQQI 376 (379)
T ss_pred ----HHHhCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 112466777777 666777788888888765
No 221
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.83 E-value=2.9e-18 Score=154.21 Aligned_cols=274 Identities=16% Similarity=0.124 Sum_probs=169.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcCC---
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGR--- 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~~--- 63 (324)
+|+..+++++++|||.| +++|.|..+...+. ..|.++++++. .|+++|++++ +++
T Consensus 79 ~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~-----~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I-~~~~~~ 151 (431)
T cd00617 79 GAENILFSILLKPGRTV-PSNMHFDTTRGHIE-----ANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLI-DEVGAE 151 (431)
T ss_pred HHHHHHHHHhCCCCCEE-ccCCcccchHHHHH-----hCCCEeEEEecccccccccccCCCCCcCHHHHHHHh-CcccCC
Confidence 47788888999999987 68899998877663 35666666544 3799999999 543
Q ss_pred -ceEEEEecCCCCc-ccccC---hHHHHHHHHhcCCEEEEcCCC-Cc---CC------C--Ccc-C------CCCcEEEe
Q 020548 64 -TKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTF-SP---LV------L--SPA-R------LGADVVVH 119 (324)
Q Consensus 64 -~~~v~~~~~~npt-G~~~~---~~~i~~l~~~~~~~~ivD~~~-~~---~~------~--~~~-~------~~~d~~~~ 119 (324)
+++|+++.|+||+ |++.+ +++|.++|+++|+++|.|+++ .. +. . .+. + ...|.+..
T Consensus 152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m 231 (431)
T cd00617 152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM 231 (431)
T ss_pred CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence 8899999999998 88875 567899999999999999995 21 10 1 111 1 13677777
Q ss_pred CCccccccCCCeeEEEEEcCh-hHHHHHHHhhh---hhhhccCCCCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHH
Q 020548 120 SISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ---GALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 120 S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L 194 (324)
|++|..+.+- |||+++++ ++++.++.... +..+.+|.+..+..+.+ .+..... .+..++..++++++.+.|
T Consensus 232 S~~K~~~~~~---GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l~~~~~~r~~l~~~L 307 (431)
T cd00617 232 SAKKDGLVNI---GGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-EDYLRHRVEQVRYLGDRL 307 (431)
T ss_pred EeecCCCCcc---ceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH
Confidence 7777665543 68999876 58888875331 11112222222222221 2222112 244555556779999999
Q ss_pred HhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--------HHHHHHHHHHhhccccccccccccCCcccee
Q 020548 195 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
++.|..+..|. +|..++++.+. ......|..+|-. ..|+.++..|......
T Consensus 308 ~~~G~~v~~P~-------------------Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~--e~gV~~~~~g~~~~~~ 366 (431)
T cd00617 308 DEAGVPIVEPA-------------------GGHAVFIDAREFLPHIPQEQFPAQALAAELYL--EAGVRAVELGIFSAGR 366 (431)
T ss_pred HHCCCCccCCC-------------------cceEEEEEhHHhcCCCCcccCcHHHHHHHHHH--HcCeeEEeecceeccc
Confidence 99998776665 56777777651 0125555544443 3444444444331110
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.|. ... ...-+.+.+||.+-+.--+.+.++.+.+++..+-+
T Consensus 367 -~~~--~~~--------~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 367 -DPN--TGE--------NKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred -CCC--CCc--------ccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 010 000 00112478999997323455566777777766643
No 222
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.83 E-value=1e-18 Score=160.01 Aligned_cols=269 Identities=15% Similarity=0.115 Sum_probs=160.4
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCc-----ccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR-----ACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~-----~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
|...++.+++++||+|+++...|+++...+...... ..+.++..++.+ |+++++++++..++++|++.
T Consensus 112 an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~-- 189 (452)
T PTZ00094 112 ANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG-- 189 (452)
T ss_pred HHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--
Confidence 566678888999999999999998877654211100 011333333333 89999999944577887764
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-C----CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
++.+|...|+++|.++|+++|+++++|++| .+.. . .+.. ++|++++|+|||++||. ||+++.++++.+.+
T Consensus 190 ~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l 265 (452)
T PTZ00094 190 ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR---SGLIFYRKKVKPDI 265 (452)
T ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-CCcEEEcCCccCCCCCC---ceEEEEecccchHH
Confidence 345999999999999999999999999998 4432 1 2322 79999999999997665 57776666554444
Q ss_pred HHhhhh--hhhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 147 MDLHQG--ALMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 147 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
...... ...+.| ++.....+.+ +..+ ...+...++..++++++.+.|++.++++..+... .
T Consensus 266 ~~~~~~~~~p~~~G-~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~---~-------- 333 (452)
T PTZ00094 266 ENKINEAVFPGLQG-GPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTD---N-------- 333 (452)
T ss_pred HHhhccccCCCCCC-CchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCC---C--------
Confidence 332210 001112 2222222222 2222 1233455667889999999998877766543310 0
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.-.++.|..++ .....+...|.. .|+ .++..+ .++.. ....++.||+|++ .
T Consensus 334 -----~~~~v~~~~~~-~~~~~~~~~L~~---~gI-~vs~~~-----~p~~~-------------~~~~~~~vRis~~-~ 384 (452)
T PTZ00094 334 -----HLVLVDLRPFG-ITGSKMEKLLDA---VNI-SVNKNT-----IPGDK-------------SALNPSGVRLGTP-A 384 (452)
T ss_pred -----ceEeecCCcCC-CCHHHHHHHHHH---CCc-EEeccc-----CCCCC-------------cCCCCCeEEECCH-H
Confidence 11233444332 123344444432 232 222110 01111 1123578999998 7
Q ss_pred CCH----HHHHHHHHHHHHhhhh
Q 020548 300 GTL----DQRWSQFEKALSRMQD 318 (324)
Q Consensus 300 ~~~----~~~~~~l~~~l~~~~~ 318 (324)
.++ +++++.+.++|+.+-+
T Consensus 385 ~tt~g~~~~di~~l~~~l~~~~~ 407 (452)
T PTZ00094 385 LTTRGAKEKDFKFVADFLDRAVK 407 (452)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHH
Confidence 765 7888888888776644
No 223
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.82 E-value=9.8e-19 Score=157.74 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=135.0
Q ss_pred hHHHHHHHc----cCCCC----EEEEcCCCchhHHHHHhhhcCc--c-cc-----eeEEEecCCCHHHHHHhhhcCCceE
Q 020548 3 AISSVLMQL----CSSGG----HVVAARTLYGGTHALLTHFFPR--A-CN-----ITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 3 ai~~~~~~~----~~~gd----~vl~~~p~y~~~~~~~~~~~~~--~-~g-----~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
|+..+++.. ..+|| +|++.++.|+++.......... . .+ ..+..++..|++++++.+ ++++++
T Consensus 100 A~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~a 178 (389)
T PRK01278 100 AVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAI-TPNTAA 178 (389)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhh-CCCeEE
Confidence 555555543 45676 8999999999876544211100 0 00 112234446899999999 778999
Q ss_pred EEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++|++|... ++++|+++|++||+++|+||+|.++.... .....|+ .|++|.++ +|+|+ |+
T Consensus 179 vivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~-~G~~i-g~ 254 (389)
T PRK01278 179 ILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIG-GGFPL-GA 254 (389)
T ss_pred EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhcc-CCcce-EE
Confidence 99999999999443 58899999999999999999997664211 1223454 57999997 58997 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
+++++++++.+..... ..+++++.+.+.++...+..+.. +...++..++.+++.+.|++.... .|.+..
T Consensus 255 ~~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~l~~l~~~--~~~~~~------- 323 (389)
T PRK01278 255 CLATEEAAKGMTPGTH-GSTYGGNPLAMAVGNAVLDVILA-PGFLDNVQRMGLYLKQKLEGLVDR--FPDVIE------- 323 (389)
T ss_pred EEEcHHHHhccCCCCC-CCCCCccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHhh--CCCcee-------
Confidence 9999888877754433 11222222222222222222111 123344556666666666653211 111000
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
...+.|.++++++.. +...|.+.+..
T Consensus 324 -----~v~g~G~~~~i~~~~--~~~~~~~~l~~ 349 (389)
T PRK01278 324 -----EVRGKGLLLGLKCVV--PNRDLVQALRD 349 (389)
T ss_pred -----eEecccEEEEEEEec--CHHHHHHHHHH
Confidence 112467788888853 35567777664
No 224
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.82 E-value=1.5e-17 Score=149.09 Aligned_cols=282 Identities=15% Similarity=0.155 Sum_probs=178.9
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|.++...+. ..|.++++++.+ |++++++++ ++++++|+++ |
T Consensus 57 ~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~-----~~G~~~v~~d~d~~~~~~d~~~le~~i-~~~tk~i~~~---~ 127 (375)
T PRK11706 57 AALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-----LRGAKIVFVDIRPDTMNIDETLIEAAI-TPKTRAIVPV---H 127 (375)
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHhc-CCCCeEEEEe---C
Confidence 4666666655 6899999999999999988773 378888888753 789999999 7789999965 4
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CC--ccCCCCcEEEeCCc--cccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LS--PARLGADVVVHSIS--KFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~--~~~~~~d~~~~S~s--K~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
++|...++++|.++|+++|+++|+|++|+... .+ +.....|+.++|++ |.++. |.+ |++++.++++.++++..
T Consensus 128 ~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~-g~g-G~~~~~~~~~~~~~~~~ 205 (375)
T PRK11706 128 YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTA-GEG-GALLINDPALIERAEII 205 (375)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccccc-cCC-eEEEECCHHHHHHHHHH
Confidence 79999999999999999999999999984332 22 22223578888877 99965 555 57778888888887766
Q ss_pred hhhh-h--------------hccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCc
Q 020548 150 HQGA-L--------------MLLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHP 210 (324)
Q Consensus 150 ~~~~-~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~ 210 (324)
..+. . ...|. .+....++..+.++..++...++..++.+.+.+.|.+.+. .+..|..+...
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 285 (375)
T PRK11706 206 REKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDC 285 (375)
T ss_pred HHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCC
Confidence 5310 0 00122 2345556665666666777777778888888888887641 12223211100
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc----cCCCCHHHHHhcC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST----SSELNAEEKALAG 286 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~ 286 (324)
.....++++.+++.....++.+.|.. .|+. ++.. +..+..+|.... ...++... .
T Consensus 286 ------------~~~~~~~~~~~~~~~~r~~l~~~L~~---~gI~-~~~~-~~p~~~~~~~~~~~~~~~~~p~a~----~ 344 (375)
T PRK11706 286 ------------KHNAHMFYIKLRDLEDRSALINFLKE---AGIM-AVFH-YIPLHSSPAGERFGRFHGEDRYTT----K 344 (375)
T ss_pred ------------ceeeEEEEEEECCcCCHHHHHHHHHH---CCCC-cccc-CCccCcchhhHhcCCCCCCChHHH----H
Confidence 01234667777644456777777775 3442 1211 111111111000 00111111 1
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+..+.+-+-++ ..-.+++++.+.++++++
T Consensus 345 ~~~~~l~lP~~-~~l~~~~~~~i~~~i~~~ 373 (375)
T PRK11706 345 ESERLLRLPLF-YNLTDVEQRTVIDTILEF 373 (375)
T ss_pred HHhCcEeccCC-CCCCHHHHHHHHHHHHHH
Confidence 12456666666 555566777777777654
No 225
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.82 E-value=1.3e-18 Score=169.11 Aligned_cols=289 Identities=14% Similarity=0.076 Sum_probs=174.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------------C--HHHHHHhhh-----
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------D--HEMVNSAIV----- 60 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------------d--~~~l~~~l~----- 60 (324)
+|++.++.++ +++||+|+++.-.|++....+ ....+ .|+++.+++.+ + .+++++.+.
T Consensus 108 ~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~~-~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~ 185 (805)
T PLN02724 108 AALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYALE-KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQK 185 (805)
T ss_pred HHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHHH-cCCeEEeccchhccccccccccccccchhhhhhhhhhhhcc
Confidence 4677888777 688999999999998877544 44444 68888887653 1 144554420
Q ss_pred ----cCCceEEEEecCCCCcccccChHHHHHHHHhc--------CCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccc
Q 020548 61 ----QGRTKVLYFESISNPTLAVANIPELSRLAHDK--------GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS 126 (324)
Q Consensus 61 ----~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~--------~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~ 126 (324)
.+++++|.+++.+|.||.+.|++++..+++.. ++++++|.++ +....+..++++|++++|+||++|
T Consensus 186 ~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~G 265 (805)
T PLN02724 186 REDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFG 265 (805)
T ss_pred ccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceecc
Confidence 14678999999999999999999775555432 3589999998 333445556689999999999998
Q ss_pred cCCCeeEEEEEcChhHHHHHHHhhhhh--------------------hhccCCCCCHHHHHHHhcCccc-----HHHHHH
Q 020548 127 GGADIIAGAVCGPANLVNSMMDLHQGA--------------------LMLLGPTMNPKVAFELSERIPH-----LGLRMK 181 (324)
Q Consensus 127 ~~g~r~~G~i~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 181 (324)
+|.+ .|+++.++++.+.+.+...+. ..+..+++.......+...++. ++...+
T Consensus 266 gP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~ 343 (805)
T PLN02724 266 YPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAM 343 (805)
T ss_pred CCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHH
Confidence 5533 488888888777665432211 0122233332222222222222 233334
Q ss_pred HHHHHHHHHHHHHHhCC-------CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-------HHHHHHHHHHhh
Q 020548 182 EHCHRALIFARRMKKLG-------LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------EEKANRLMNYLQ 247 (324)
Q Consensus 182 ~~~~~~~~l~~~L~~~~-------~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~~l~ 247 (324)
+..+.++++.+.|++++ .++..|.-... +...++++++|.+.+ ......+.+..+
T Consensus 344 ~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~-----------~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~g 412 (805)
T PLN02724 344 HTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKL-----------EFHIQGPIVTFNLKRADGSWVGHREVEKLASLSG 412 (805)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCC-----------CcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcC
Confidence 45788889999998874 23333320000 001267899999873 222444544444
Q ss_pred ccccccccccccCCccceeccccccccCCCCHHHH--------------Hhc-CCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 248 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK--------------ALA-GISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 248 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
+ .+..|..+....+- .+..+.+... ... +...+.||+|+| ..++.++++.|.++
T Consensus 413 I-------~vR~G~~Ca~~~~~---~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~lv~~ 481 (805)
T PLN02724 413 I-------QLRTGCFCNPGACA---KYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQKFIDF 481 (805)
T ss_pred c-------EEeeccccCchHHH---HHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHHHHHH
Confidence 4 33444332211000 0000000000 001 223489999999 99999999999999
Q ss_pred HHhh
Q 020548 313 LSRM 316 (324)
Q Consensus 313 l~~~ 316 (324)
|+..
T Consensus 482 l~~~ 485 (805)
T PLN02724 482 IISS 485 (805)
T ss_pred HHHH
Confidence 9874
No 226
>PRK10534 L-threonine aldolase; Provisional
Probab=99.82 E-value=1.8e-18 Score=152.83 Aligned_cols=213 Identities=16% Similarity=0.150 Sum_probs=134.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC------CceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG------RTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~------~~~~v~~~~ 71 (324)
++..++.+++.+||+|+++.|.|....... ......+.++..++.+ |++++++++ ++ ++++|++++
T Consensus 61 a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~~~~~~lv~l~n 137 (333)
T PRK10534 61 ANLVALLSHCERGEEYIVGQAAHNYLYEAG--GAAVLGSIQPQPIDAAADGTLPLDKVAAKI-KPDDIHFARTRLLSLEN 137 (333)
T ss_pred HHHHHHHHhcCCCCeeEEechhhhhHhcCC--chHHhcCceEEeecCCCCCCCCHHHHHHhh-cccCcCcccceEEEEec
Confidence 455666677899999999988875322110 0001112455555432 799999988 54 689999997
Q ss_pred CCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcC-----CCCcc--CCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPL-----VLSPA--RLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~-----~~~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|+ +|.+.+.+ +|.++|+++++++++||+|... ..... ....|.++.|+||.|+++ +|||++++++
T Consensus 138 p~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~ 212 (333)
T PRK10534 138 TH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP---VGSLLVGNRD 212 (333)
T ss_pred CC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc---ccceEEcCHH
Confidence 65 59998755 5567889999999999997311 11111 112465667899998764 4447899999
Q ss_pred HHHHHHHhhhhhhhccCCCCC--HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.++.... .++.... ...++.....++....++++..++++++.+.|++.|.++. |.
T Consensus 213 ~i~~~~~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~-------------- 273 (333)
T PRK10534 213 YIKRARRWRK----MTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREAGADVM-RQ-------------- 273 (333)
T ss_pred HHHHHHHHHH----HhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCccC-CC--------------
Confidence 9999987765 2232222 1212222222333234555556678899999999887654 32
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.++++++++++ .....+.+.++.
T Consensus 274 -----~~nfv~~~~~~-~~~~~~~~~l~~ 296 (333)
T PRK10534 274 -----DTNMLFVRVGE-EQAAALGEYMRE 296 (333)
T ss_pred -----CceEEEEECCc-hhHHHHHHHHHH
Confidence 36788998863 234566666664
No 227
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.82 E-value=6.5e-19 Score=159.43 Aligned_cols=223 Identities=16% Similarity=0.227 Sum_probs=136.0
Q ss_pred chHHHHHHHccCCC-------CEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLCSSG-------GHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-------d~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..+++.+...+ ++|++..+.|+++........... ....+..++..|++++++++ ++++++
T Consensus 107 eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~ 185 (396)
T PRK02627 107 EANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAI-TDKTAA 185 (396)
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhc-CCCeEE
Confidence 46677777544332 679999999987654332111000 00112334455899999999 788999
Q ss_pred EEEecCCCCccc-cc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLA-VA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~-~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++||+|. .. .+++|.++|+++|+++|+||+|+++.... .....|+ .++||.++ +|.|+ ||
T Consensus 186 vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi--~t~sK~~~-~G~ri-g~ 261 (396)
T PRK02627 186 VMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDI--MTLAKGLG-GGVPI-GA 261 (396)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCE--EEEcchhh-CCccc-EE
Confidence 999999999994 43 38899999999999999999997664221 1123454 46999998 68997 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
+++++++++.+..... ..+++++.+.+.++...++.... +...++..++.+++.+.|++..... |...
T Consensus 262 ~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~-------- 329 (396)
T PRK02627 262 VLAKEKVADVFTPGDH-GSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKY--PGIK-------- 329 (396)
T ss_pred EEEcHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhC--CCee--------
Confidence 9999988887754322 11233333333333333322211 2234445555666666665542111 1100
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
...+.|.+++++++. ...++.+.+..
T Consensus 330 -----~~~~~g~~~~i~~~~--~~~~~~~~l~~ 355 (396)
T PRK02627 330 -----EVRGLGLMIGIELDR--PAAEIVKKALE 355 (396)
T ss_pred -----eeccCcEEEEEEecC--cHHHHHHHHHH
Confidence 011357889999842 35567776653
No 228
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.81 E-value=3.9e-18 Score=156.98 Aligned_cols=255 Identities=17% Similarity=0.148 Sum_probs=163.7
Q ss_pred ccCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-c
Q 020548 11 LCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-A 80 (324)
Q Consensus 11 ~~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~ 80 (324)
++++|| +|++++++|+.+...+. ..|++++.++.+ |++++++++ ++++++|++++|+ |||.. .
T Consensus 153 ~~~~Gd~~~~~Vlv~~~~hp~~~~~~~-----~~G~~vv~v~~~~~~~~D~e~L~~~i-~~~t~~V~v~~Pn-~tG~~~~ 225 (481)
T PRK04366 153 HEARGDTKRTEVIVPDSAHGTNPASAA-----MAGFKVVEIPSNEDGLVDLEALKAAV-GEDTAALMLTNPN-TLGLFER 225 (481)
T ss_pred hhccCcCCCCEEEEcCCccHhHHHHHH-----HcCCEEEEeecCCCCCcCHHHHHhhc-ccCCeEEEEeCCC-Cccccch
Confidence 356776 99999999999998773 378888877652 899999999 8889999999987 99987 5
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-Cc-C-CCCccCCCCcEEEeCCccccccC---CCeeEEEEEcChhHHHHHHHhh---h
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SP-L-VLSPARLGADVVVHSISKFISGG---ADIIAGAVCGPANLVNSMMDLH---Q 151 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~-~-~~~~~~~~~d~~~~S~sK~~~~~---g~r~~G~i~~~~~~~~~l~~~~---~ 151 (324)
|+++|+++|+++|+++++|+++ .+ + ..++.++|+|++++|.||++++| |++-+|+++.++++.+.+.... .
T Consensus 226 dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~ 305 (481)
T PRK04366 226 NILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKD 305 (481)
T ss_pred HHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeecc
Confidence 8999999999999999999998 22 2 24677789999999999998755 2221488888877776653110 0
Q ss_pred h--h----------hhccCCCCCH---HHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 152 G--A----------LMLLGPTMNP---KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 152 ~--~----------~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
+ + .+....+.+. ..++..+. +.+.+.+..++...+++++.+.|++. +.+..+. +
T Consensus 306 g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~----~---- 376 (481)
T PRK04366 306 GDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDR----P---- 376 (481)
T ss_pred CCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCC----C----
Confidence 0 0 0001111111 11111111 22334444566688899999999886 3322211 0
Q ss_pred HHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 215 LKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.-..+.|..+ ......++.++|.. .|+. .+ ....| ...++
T Consensus 377 ----------~~~~~~~~~~~~~~~g~~~~~v~~~L~~---~Gi~---~~----~~~~p----------------~~~~~ 420 (481)
T PRK04366 377 ----------CMHEFVLSGKKLKETGVRTLDIAKRLLD---YGFH---PP----TIYFP----------------LIVPE 420 (481)
T ss_pred ----------eeEEEEEECccccccCCCHHHHHHHHHH---CCcc---CC----ccccc----------------cccCC
Confidence 0112233221 11245667777764 3331 11 00001 11246
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.+|+|++ ..++.++++.|.++|+.+.+
T Consensus 421 ~l~is~~-e~~t~edid~l~~~l~~i~~ 447 (481)
T PRK04366 421 ALMIEPT-ETESKETLDAFIAAMKQIAE 447 (481)
T ss_pred eEEEccc-CCCCHHHHHHHHHHHHHHHH
Confidence 8999999 88888888888888877753
No 229
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.80 E-value=1.6e-17 Score=150.35 Aligned_cols=266 Identities=15% Similarity=0.171 Sum_probs=157.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeE--EEecC------CCHHHHHHhhhcCCceEEEEecC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT--TFVDI------SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~--~~~~~------~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++|+..++.++++|||+|+++...|.+.... ...+...+... ..++. .|++++++.++..++++|+++.+
T Consensus 100 ~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~ 177 (416)
T PRK13034 100 SQANGAVYLALLKPGDTILGMSLSHGGHLTH--GAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS 177 (416)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCccceeeeec--CCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC
Confidence 3578888999999999999999999763210 00000011111 22222 48999999884457889887654
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNS 145 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~ 145 (324)
. +|...|+++|.++|+++|+++++|+++ .+.. ..+.. ++|++++|+||+++++. ||+++++. .+.+.
T Consensus 178 ~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~ 251 (416)
T PRK13034 178 A--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKK 251 (416)
T ss_pred c--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHH
Confidence 3 578889999999999999999999997 3322 12222 58999999999996655 67776654 45555
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHH---hcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFEL---SERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.... .+ ..+....+..++.. ...+ ....++.++..++.+++++.|++.|+++..+.
T Consensus 252 ~~~~~~-~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~---------------- 313 (416)
T PRK13034 252 INSAVF-PG-LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGG---------------- 313 (416)
T ss_pred HHhhcC-Cc-ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCC----------------
Confidence 554332 11 11122222222221 1111 12234567789999999999999887654331
Q ss_pred CCCcceEEEEEeCCHH-HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC-
Q 020548 222 EYGFGGLLCLDMETEE-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL- 299 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~-~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~- 299 (324)
..+.++.+.+.+.. ....+.+.|.. .|++....+ .|.... ....+..+|+|+. .
T Consensus 314 --~~t~i~~v~~~~~~~~~~~~~~~L~~---~GI~v~~~~-------~p~~~~-----------~p~~~~~lR~~~~-~~ 369 (416)
T PRK13034 314 --TDNHLLLVDLRPKGLSGKDAEQALER---AGITVNKNT-------VPGDTE-----------SPFVTSGIRIGTP-AG 369 (416)
T ss_pred --CCCcEEEEEcCCCCCCHHHHHHHHHh---CCcEEeccC-------CCCCCc-----------CCCCCCeeEeCcH-HH
Confidence 02446777776322 33444455553 333211111 111000 0111357999987 5
Q ss_pred ---CCHHHHHHHHHHHHHhh
Q 020548 300 ---GTLDQRWSQFEKALSRM 316 (324)
Q Consensus 300 ---~~~~~~~~~l~~~l~~~ 316 (324)
...+++++.+.++++++
T Consensus 370 t~~~~~~~di~~l~~~l~~~ 389 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDV 389 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHH
Confidence 34467777777777655
No 230
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.80 E-value=4.1e-17 Score=142.02 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=145.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhh-cCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIV-QGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~-~~~~~~v~~~~~~np 75 (324)
.|+..++.++++|||+|++......+ .-|..++.+ +|.++..++.. |++++++++. +++.++|.+.+.-..
T Consensus 67 ~amEAav~sl~~pgdkVLv~~nG~FG--~R~~~ia~~-~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETS 143 (383)
T COG0075 67 LAMEAAVASLVEPGDKVLVVVNGKFG--ERFAEIAER-YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETS 143 (383)
T ss_pred HHHHHHHHhccCCCCeEEEEeCChHH--HHHHHHHHH-hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCc
Confidence 47888899999999999999876554 334445555 78888777654 9999999994 256889999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
||...|+++|+++|++||+++|||.+- ++...++.++|+|+++.+..|++++|.+- |++..+++.++.+......
T Consensus 144 TGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGl--a~v~~S~~a~e~~~~~~~~~ 221 (383)
T COG0075 144 TGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGL--AFVAVSERALEAIEERKHPS 221 (383)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCcc--ceeEECHHHHHHHhcCCCCc
Confidence 999999999999999999999999985 44456677889999999999999886543 7887777766666532110
Q ss_pred ----------hh---hccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 153 ----------AL---MLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 153 ----------~~---~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+. ..+..++.......+ ++.+ +.++.+.+|++++++.+++.++++|+++..
T Consensus 222 ~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 222 FYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred eeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 11 112222222222222 2211 236789999999999999999999996543
No 231
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.80 E-value=1.2e-18 Score=157.61 Aligned_cols=190 Identities=23% Similarity=0.235 Sum_probs=139.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCch---hHHHHHhhhcCcccceeEEEecC---CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYG---GTHALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~---~~~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
++|+..++.+ +.+||+|++++..|. +..... ..... .|+++.+++. .+++++++++ +++|++|++++++|
T Consensus 147 ~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~-~~~~~-~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN 222 (454)
T TIGR00474 147 AAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIP-DVMEQ-SGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSN 222 (454)
T ss_pred HHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHH-HHHHH-cCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCc
Confidence 3577777744 689999999997753 322221 12223 7999999876 4789999999 88999999999999
Q ss_pred Cc--c--cccChHHHHHHHHhcCCEEEEcCCCCcC-------------CCCccCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 75 PT--L--AVANIPELSRLAHDKGVTVVVDNTFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 75 pt--G--~~~~~~~i~~l~~~~~~~~ivD~~~~~~-------------~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++ | ...|+++|+++||++|+++++|.+.+.+ ..++.+.|+|++++|.+|+++||. +|+++
T Consensus 223 ~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~---~G~i~ 299 (454)
T TIGR00474 223 YRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ---AGIIV 299 (454)
T ss_pred ccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe---EEEEE
Confidence 85 6 4689999999999999999999873211 124456799999999999998874 69999
Q ss_pred cChhHHHHHHHhhh------------hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 138 GPANLVNSMMDLHQ------------GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 138 ~~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+++++++.++.... ......+..+.+..++..+..+..+..+.+++.+++..+.++|++.
T Consensus 300 g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~ 371 (454)
T TIGR00474 300 GKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAA 371 (454)
T ss_pred ECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence 99888765432111 0011223334445555566667777788889999999999999874
No 232
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.79 E-value=1e-17 Score=151.75 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=133.1
Q ss_pred CCEEEEcCCCchhHHHHHhh----------hcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---
Q 020548 15 GGHVVAARTLYGGTHALLTH----------FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~----------~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 81 (324)
.++|+..+..|++....... +.+ ....+..++.+|++++++.+ .+++++|+++++++..|...+
T Consensus 129 ~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~l~~~l-~~~~aaiiiep~~~~gg~~~~~~~ 205 (403)
T PRK05093 129 KTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGP--KPADITHVPFNDLAAVKAVI-DDHTCAVVVEPIQGEGGVIPATPE 205 (403)
T ss_pred CCeEEEEcCCcCCchhhhHhhcCChhhhhcCCC--CCCCcEEeCCCCHHHHHHHh-cCCeEEEEEecccCCCCCccCCHH
Confidence 35788888888775432211 111 12235566677999999999 778999999955444444432
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|+++|++||+++|+||+|.++.... .....| +.|+||.++ +|+|+ ||+++++++++.+..... .
T Consensus 206 ~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd--i~s~sK~l~-~G~ri-g~vv~~~~i~~~l~~~~~-~ 280 (403)
T PRK05093 206 FLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD--ILTSAKALG-GGFPI-GAMLTTAEIASHFKVGTH-G 280 (403)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC--EEEeccccc-CCcce-EEEEEcHHHHhhcCCCCC-C
Confidence 8899999999999999999997663221 112345 567999998 58997 999999999888865333 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.+++++.+.+.++...++.+. -.+..+++.++++.+.+.|++.+....... ...+.|.++++.+
T Consensus 281 ~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---------------~~~~~G~~~~~~l 344 (403)
T PRK05093 281 STYGGNPLACAVAEAVFDIIN-TPEVLEGVKARRQRFVDGLQKINQKYGVFS---------------EIRGMGLLIGAEL 344 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHhhCCCeE---------------eEeeCceEEEEEe
Confidence 122223333323232222221 234556778889999999988643211100 1114688899998
Q ss_pred CCH--HHHHHHHHHhhc
Q 020548 234 ETE--EKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~--~~~~~~~~~l~~ 248 (324)
++. ....+|.+.+..
T Consensus 345 ~~~~~~~~~~~~~~l~~ 361 (403)
T PRK05093 345 KPQYKGRARDFLNAAAE 361 (403)
T ss_pred cCcchhHHHHHHHHHHH
Confidence 642 246677777664
No 233
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.79 E-value=6e-17 Score=145.02 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=147.8
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCccc
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLA 78 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~ 78 (324)
+..++..+.++||.|++....|.+....++.. .+..+. ++..|++++++.++. +++.+|++++++|++|.
T Consensus 84 ~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~----~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~ 158 (370)
T PRK05937 84 NLGLCAHLSSVTDYVLWDEQVHISVVYSLSVI----SGWHQS-FRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGT 158 (370)
T ss_pred HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHc----CCceEE-ecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCC
Confidence 33344445578888888889998888877431 233333 455689999998842 34567888999999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCcc----CCC---CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPA----RLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~----~~~---~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+.|+++|.++|+++|+++++|++|+ + +..+.. .++ .++++.|+||.+|+.| +| ++..++....+...
T Consensus 159 i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~-vl~~~~~~~~~~~~ 234 (370)
T PRK05937 159 LAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AA-LLSSSEVKQDLMLN 234 (370)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eE-EEcCHHHHHHHHHh
Confidence 9999999999999999999999994 3 332221 122 3467899999998865 34 44445655555432
Q ss_pred hhhhhhccCCCCCHHHHHHHhcCcccH----HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 150 HQGALMLLGPTMNPKVAFELSERIPHL----GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
..+. .+.++ ..+.....+...++.+ ....++..++++++.+.|...+ +
T Consensus 235 ~~~~-~~s~~-~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~-----~--------------------- 286 (370)
T PRK05937 235 SPPL-RYSTG-LPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAA-----P--------------------- 286 (370)
T ss_pred CCCC-eecCC-CCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCC-----C---------------------
Confidence 2211 12222 2222222222222222 1223344555555555543211 1
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
+....+.+++. ....+.+.|.. .|+ .++ ..+.| ..+.+|+|++ ..+++++
T Consensus 287 ~~~~~i~~~~~-~~~~~~~~L~~---~gi-~v~------~~~~~------------------~~~~iRis~~-~~~t~ed 336 (370)
T PRK05937 287 GCVQPIFLPGI-SEQELYSKLVE---TGI-RVG------VVCFP------------------TGPFLRVNLH-AFNTEDE 336 (370)
T ss_pred CCEEEEEeCCh-hHHHHHHHHHH---CCe-eEE------eeCCC------------------CCCEEEEEcC-CCCCHHH
Confidence 11234555533 24556666653 232 111 11111 1357999999 9999999
Q ss_pred HHHHHHHHHhhhh
Q 020548 306 WSQFEKALSRMQD 318 (324)
Q Consensus 306 ~~~l~~~l~~~~~ 318 (324)
++.+.++|+++.+
T Consensus 337 id~l~~~L~~~~~ 349 (370)
T PRK05937 337 VDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 234
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.79 E-value=1.1e-18 Score=151.19 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=102.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------CCHHHHHHhhhc-CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------SDHEMVNSAIVQ-GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------~d~~~l~~~l~~-~~~~~v~~ 69 (324)
+|+..++.++++|||+|+++.++|.+....+. ..|.++.+++. .|++++++++++ +++++|++
T Consensus 86 ~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l 160 (294)
T cd00615 86 SSNKAVILAVCGPGDKILIDRNCHKSVINGLV-----LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVI 160 (294)
T ss_pred HHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH-----HCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEE
Confidence 46778888899999999999999999888774 25777766643 278999999843 57899999
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++| |++|.+.|+++|+++|+++|+++++|++|+. +.+. ....++|+++.|+||++++ .+.+|++..+.
T Consensus 161 ~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g--~~~~~~l~~~~ 235 (294)
T cd00615 161 TNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA--LTQGSMIHVKG 235 (294)
T ss_pred ECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccch--HhHHHHHHhCC
Confidence 988 7899999999999999999999999999843 3221 2234899999999999754 33335554443
No 235
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.79 E-value=2.9e-17 Score=148.84 Aligned_cols=214 Identities=16% Similarity=0.131 Sum_probs=129.8
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCc--c------cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPR--A------CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---- 81 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~--~------~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---- 81 (324)
.+++|++.+..|++.....-..... . ....+..++..|++++++.++.+++++|++++++||+|.+.+
T Consensus 121 ~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~ 200 (400)
T PTZ00125 121 NQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGY 200 (400)
T ss_pred CCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHH
Confidence 3578888888887754332111000 0 001234455569999999994368999999999999999987
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 154 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~ 154 (324)
+++|.++|++||+++|+||+|.++... . .....|+++ ++|++++++.++ |+++.++++++.+..... ..
T Consensus 201 l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~g~~~i-g~v~~~~~~~~~~~~~~~-~~ 276 (400)
T PTZ00125 201 LKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL--LGKALSGGLYPI-SAVLANDDVMLVIKPGEH-GS 276 (400)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE--EcccccCCCcCc-EEEEEcHHHHhhccCCCC-CC
Confidence 999999999999999999999655321 1 122457765 679998754597 999999998888764332 11
Q ss_pred hccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 155 MLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
..+.++....++ ..++.+.. ....++..++.+.+.+.|++......... ...+.|.++++.+
T Consensus 277 -t~~~~~~~~~aa~~~l~~i~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~---------------~~~~~g~~~~v~~ 339 (400)
T PTZ00125 277 -TYGGNPLACAVAVEALEVLKE-EKLAENAQRLGEVFRDGLKELLKKSPWVK---------------EIRGKGLLNAIVF 339 (400)
T ss_pred -CCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhcCCCeE---------------EEecccEEEEEEE
Confidence 222222222222 12211111 12234445566666777765410000000 0013578888888
Q ss_pred CC--HHHHHHHHHHhhc
Q 020548 234 ET--EEKANRLMNYLQN 248 (324)
Q Consensus 234 ~~--~~~~~~~~~~l~~ 248 (324)
+. ......+.+.+..
T Consensus 340 ~~~~~~~~~~~~~~l~~ 356 (400)
T PTZ00125 340 DHSDGVNAWDLCLKLKE 356 (400)
T ss_pred ccCcchHHHHHHHHHHH
Confidence 63 3456667777653
No 236
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.78 E-value=1.6e-17 Score=149.29 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=136.7
Q ss_pred chHHHHHHHc-cCCC-CEEEEcCCCchhHHHHHhhhcCc--c---c---ceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQL-CSSG-GHVVAARTLYGGTHALLTHFFPR--A---C---NITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~-~~~g-d~vl~~~p~y~~~~~~~~~~~~~--~---~---g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++... .-+| ++|++.++.|++........... . + ...+..++.+|++++++.+ ++++++|++++
T Consensus 97 ~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~ii~e~ 175 (377)
T PRK02936 97 EANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM-NEEVAAVMLEV 175 (377)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhc-cCCeEEEEEec
Confidence 3555566532 1234 67999999888543222111000 0 0 0123455556899999999 78899999999
Q ss_pred CCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC--c-----cCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
+++++|... .+++|.++|++||+++|+||+|.++... + .....|++ ++||.++ +|+|+ |++++++
T Consensus 176 i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~i-g~v~~~~ 251 (377)
T PRK02936 176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-NGIPV-GAMIGKK 251 (377)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-CCCcc-EEEEEcH
Confidence 999988774 3899999999999999999999666432 1 11234654 6999998 58996 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--CceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~p~~~~~~~~~~~~~~ 218 (324)
++.+.+..... ..++.++.+.+.++...+..+. .+..+++..++.+++.+.|++.. .....+
T Consensus 252 ~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------- 315 (377)
T PRK02936 252 ELGTAFGPGSH-GSTFGGNPLAMAAAKEVLQVIK-QPSFLEEVQEKGEYFLQKLQEELEHLECVKN-------------- 315 (377)
T ss_pred HHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhhCCcEEe--------------
Confidence 98887754332 1112222233333333332221 12445666778888888887631 211100
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
..+.|.++++++++. ...+.+.+..
T Consensus 316 ---v~~~g~~~~i~~~~~--~~~~~~~l~~ 340 (377)
T PRK02936 316 ---IRGKGLMIGIECTEE--VAPVIEQLRE 340 (377)
T ss_pred ---EeecceEEEEEecch--HHHHHHHHHH
Confidence 013577899999743 4556666653
No 237
>PRK04311 selenocysteine synthase; Provisional
Probab=99.77 E-value=7e-18 Score=153.01 Aligned_cols=190 Identities=22% Similarity=0.174 Sum_probs=134.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH---HHHHhhhcCcccceeEEEecC---CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT---HALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~---~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+ +.+||+|++++.++..+ ... .....+ .|+++.+++. .+++++++++ +++|++|++++++|+
T Consensus 153 aAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i-~~~~~~-~G~~l~~v~~~~~t~~~dle~aI-~~~TklV~~vh~sN~ 228 (464)
T PRK04311 153 AAVLLALNA-LAAGKEVIVSRGELVEIGGAFRI-PDVMRQ-AGARLVEVGTTNRTHLRDYEQAI-NENTALLLKVHTSNY 228 (464)
T ss_pred HHHHHHHHH-hCCCCEEEEcchhhhhcCcchhh-HHHHHH-CCcEEEEECCCCCCCHHHHHHhc-CccCeEEEEEcCCCc
Confidence 577777755 68999999998755422 111 112223 7899888875 3789999999 889999999999998
Q ss_pred --cc--cccChHHHHHHHHhcCCEEEEcCCCCcC-------------CCCccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 76 --TL--AVANIPELSRLAHDKGVTVVVDNTFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 76 --tG--~~~~~~~i~~l~~~~~~~~ivD~~~~~~-------------~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+| ...|+++|+++||++|+++++|++.+.+ ...+.+.|+|++++|++|++|||. +|++++
T Consensus 229 ~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~---~G~i~g 305 (464)
T PRK04311 229 RIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ---AGIIVG 305 (464)
T ss_pred cccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc---eEEEEE
Confidence 34 5679999999999999999999953211 123445799999999999998875 699999
Q ss_pred ChhHHHHHHHhhhh-hhhccCCCCCHHHHHHH-----------hcCcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 139 PANLVNSMMDLHQG-ALMLLGPTMNPKVAFEL-----------SERIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 139 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
++++++.++..... ..+....+++++.+.+. +..+..+..+.+++.++++.+.++|+++.
T Consensus 306 ~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~ 377 (464)
T PRK04311 306 KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL 377 (464)
T ss_pred cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence 99998877632110 11122333444433332 11223355677888899999999999874
No 238
>PLN02271 serine hydroxymethyltransferase
Probab=99.77 E-value=1.2e-16 Score=144.39 Aligned_cols=220 Identities=18% Similarity=0.176 Sum_probs=150.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhh-----hcCcccceeEEEec--CC------CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTH-----FFPRACNITTTFVD--IS------DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-----~~~~~~g~~~~~~~--~~------d~~~l~~~l~~~~~~~v~ 68 (324)
.|...++.++++|||+|+..+..|+++...... .... .|+.+..++ .+ |.+++++.....++|+|+
T Consensus 225 ~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~-sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII 303 (586)
T PLN02271 225 SANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSG-ASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILI 303 (586)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCchhccccccccccccc-ccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEE
Confidence 467788889999999999999999888765421 1111 344333332 32 889999854488999999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh-
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN- 141 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~- 141 (324)
+....+| ...|+++++++|+++|+++++|.++ .++. .+|.. ++|++++|+||++.||- ||+++.+++
T Consensus 304 ~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~ 377 (586)
T PLN02271 304 CGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGP 377 (586)
T ss_pred ECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCCCCC---ceEEEecccc
Confidence 9888888 7789999999999999999999998 5553 23444 59999999999997765 677765543
Q ss_pred -------------------HHHHHHHhhhhhhhccCCCCCHHHHHH--Hhc--CcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 142 -------------------LVNSMMDLHQGALMLLGPTMNPKVAFE--LSE--RIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 142 -------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+.+++.....+ . ..++......++. .+. ....+..+.++..+|++.|.+.|.+.|
T Consensus 378 ~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-g-lqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G 455 (586)
T PLN02271 378 KLRKQGMLLSHGDDNSHYDFEEKINFAVFP-S-LQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRK 455 (586)
T ss_pred cccccCCccccccccccHHHHHHhhcccCC-c-cccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44444433321 1 2233322222222 122 123356788888999999999999999
Q ss_pred CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 199 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 199 ~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
+++..-. +.+ ..+++++. +...+++.++...+
T Consensus 456 ~~vv~gg---Tdn---------------HlvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 456 CRLVTGG---TDN---------------HLLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred CeEeeCC---CCc---------------ceeeecCcccCCCHHHHHHHHHHcCe
Confidence 9776433 222 26677665 35667777776664
No 239
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.77 E-value=8e-17 Score=156.22 Aligned_cols=266 Identities=18% Similarity=0.168 Sum_probs=176.8
Q ss_pred hHHHHHHHccCC-CC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc---CCceEEEE
Q 020548 3 AISSVLMQLCSS-GG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ---GRTKVLYF 69 (324)
Q Consensus 3 ai~~~~~~~~~~-gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~---~~~~~v~~ 69 (324)
|+..+++++.++ || +|+++...|+++...+. ..|++++.++.+ |+++|++++ + +++++|++
T Consensus 599 a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~-----~~G~~vv~v~~d~~G~vDle~L~~~i-~~~~~~ta~V~v 672 (993)
T PLN02414 599 AGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA-----MCGMKIVVVGTDAKGNINIEELRKAA-EAHKDNLAALMV 672 (993)
T ss_pred HHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH-----HCCCEEEEeccCCCCCcCHHHHHHHH-hccCCCeEEEEE
Confidence 678888888866 88 89999999999998884 268898888764 899999999 5 47899999
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-Cc--CCCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhH
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP--LVLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANL 142 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~--~~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~ 142 (324)
++|+|.+|...|+++|.++||++|+++++|.++ .+ ....|.++|+|++++|.||+|++| |.-+ |+++.++++
T Consensus 673 t~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~-G~l~~~~~L 751 (993)
T PLN02414 673 TYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHL 751 (993)
T ss_pred ECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCe-eeEEEchhh
Confidence 999999999999999999999999999999998 22 235677889999999999987743 2334 999888876
Q ss_pred HHHHHHhhhh----hh----hccCCCCC--HH-------HHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 143 VNSMMDLHQG----AL----MLLGPTMN--PK-------VAFELS--ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 143 ~~~l~~~~~~----~~----~~~~~~~~--~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
...+-....+ .. ..+.++.. .. .++..+ .+.+.+.+..+....+++++.+.|++ +..+.+
T Consensus 752 ~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~ 830 (993)
T PLN02414 752 APFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLF 830 (993)
T ss_pred cccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccc
Confidence 6655432100 00 01111111 11 111111 12333444456668899999999987 333333
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEE-eCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLD-MET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
+.-.+ + . -.-.++.+. ++. ...+..+.++|.. +|+++. ...
T Consensus 831 ~~~~~-~---~---------~hEfv~~~~~l~~~~g~~~~di~krL~d---~Gihap-------------t~~------- 874 (993)
T PLN02414 831 RGKNG-T---C---------AHEFIIDLRPFKNTAGIEPEDVAKRLMD---YGFHAP-------------TMS------- 874 (993)
T ss_pred cCCCC-C---e---------eeeEEEeccccccccCCCHHHHHHHHHH---cCcEEe-------------eec-------
Confidence 22000 0 0 001122222 211 1234567677663 444221 000
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+. .++.+|++.. ..+..++++.|.+++..+.+
T Consensus 875 ----~p-v~~~lmiepT-E~~skeelDrf~~al~~i~~ 906 (993)
T PLN02414 875 ----WP-VPGTLMIEPT-ESESKAELDRFCDALISIRE 906 (993)
T ss_pred ----cc-cCCEEEEEee-eeCCHHHHHHHHHHHHHHHH
Confidence 01 1578999999 88899999999999988764
No 240
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.76 E-value=6.4e-17 Score=146.02 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=152.4
Q ss_pred CCEEEEcCCCchhHHHHHhhhcC--cc------cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc----Ch
Q 020548 15 GGHVVAARTLYGGTHALLTHFFP--RA------CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NI 82 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~--~~------~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~----~~ 82 (324)
.++|+..+..|++.....-.... .. ....+..++.+|++++++++ ++++++|++++++++.|... .+
T Consensus 124 r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epi~~~~G~~~~~~~~l 202 (397)
T TIGR03246 124 KSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALI-SDKTCAVIVEPIQGEGGVVPADPAFL 202 (397)
T ss_pred CCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHh-ccCeEEEEEecccCCCCCcCCCHHHH
Confidence 35788888777775432211100 00 01134456667999999999 77899999999888888663 38
Q ss_pred HHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh
Q 020548 83 PELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 155 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~ 155 (324)
++|+++|++||+++|+||+|.++... .....+|++ +++|.+++ |.++ |++++++++++.+..... ..+
T Consensus 203 ~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lgg-G~pi-gav~~~~~i~~~~~~~~~-~~t 277 (397)
T TIGR03246 203 KGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALGG-GFPI-GAMLTTTEIAAHLKVGTH-GTT 277 (397)
T ss_pred HHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--EeehhhhC-Ccce-eEEEEcHHHHHhccCCCc-CCC
Confidence 89999999999999999998666321 112245665 69999975 8997 999999988887754322 112
Q ss_pred ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 156 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+.++.+...++...+..+. -+...++..++.+++.+.|++.+.+..... ...+.|.++.+++.+
T Consensus 278 ~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~---------------~vrg~G~~~~i~~~~ 341 (397)
T TIGR03246 278 YGGNPLACAVAGKVLDLVN-TPELLAGVKQRHDLFVDGLEKINARYNVFS---------------EIRGKGLLIGAVLTE 341 (397)
T ss_pred CCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHhcCCCeE---------------eeecCceEEEEEEcC
Confidence 3222222222222222221 234567778888889888887643111011 112467788888753
Q ss_pred --HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 236 --EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 236 --~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
......|.+.+.. .|++. .+ ..++.+|+++. ...++++++.+.++|
T Consensus 342 ~~~~~~~~~~~~l~~---~Gv~~-----------~~-----------------~g~~~lR~~p~-~~~t~~~i~~~~~~l 389 (397)
T TIGR03246 342 AYQGKAKQFVNAAAE---EGVIA-----------LI-----------------AGPNVVRFAPS-LVISDDDIDEGLARF 389 (397)
T ss_pred chhhHHHHHHHHHHH---CCeEE-----------ee-----------------cCCCEEEEeCC-CCCCHHHHHHHHHHH
Confidence 2345677777664 33311 11 01368999887 655665555555555
Q ss_pred Hhh
Q 020548 314 SRM 316 (324)
Q Consensus 314 ~~~ 316 (324)
++.
T Consensus 390 ~~~ 392 (397)
T TIGR03246 390 ERA 392 (397)
T ss_pred HHH
Confidence 443
No 241
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.5e-16 Score=138.66 Aligned_cols=280 Identities=20% Similarity=0.243 Sum_probs=181.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+.++++++ ++|||+||+++-+|.++...+ ...|.+++++|.+ |++.+++++ +++||+|+.. +
T Consensus 60 ~AL~laL~al~ig~GDeVI~ps~TfvATan~i-----~~~Ga~PVFvDid~~T~nid~~~ie~aI-t~~tKAIipV---h 130 (374)
T COG0399 60 AALHLALLALAIGPGDEVIVPSFTFVATANAV-----LLVGAKPVFVDIDPDTLNIDPDLIEAAI-TPRTKAIIPV---H 130 (374)
T ss_pred HHHHHHHHhcCCCCCCEEEecCCchHHHHHHH-----HHcCCeEEEEecCCcccCCCHHHHHHHc-ccCCeEEEEe---h
Confidence 3677777755 699999999999999988877 3379999999986 899999999 8889999954 5
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCC--CcEEEeCC--ccccccCCCeeEEEEE-cChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLG--ADVVVHSI--SKFISGGADIIAGAVC-GPANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~--~d~~~~S~--sK~~~~~g~r~~G~i~-~~~~~~~~l~~ 148 (324)
-.|...|+++|.++|++||++||+|.++ .+..+.....| -|+.++|| +|.++... ||.++ .++++.++++.
T Consensus 131 l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgE---GGav~tnd~ela~k~~~ 207 (374)
T COG0399 131 LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGE---GGAVVTNDEELAEKARS 207 (374)
T ss_pred hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccC---ceEEEeCCHHHHHHHHH
Confidence 7899999999999999999999999998 33333322332 57888888 78886643 67775 56788888887
Q ss_pred hhhhhhh----------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 149 LHQGALM----------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 149 ~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
.+.+... ..| ..+....+++.+.+++.+++..++.+++++.+.+.|++.+. +..|..+....|
T Consensus 208 lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~---- 282 (374)
T COG0399 208 LRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVH---- 282 (374)
T ss_pred HHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCcee----
Confidence 6652110 112 22455566666777788888888888999999999998753 112221111110
Q ss_pred HHhccCCCcceEEEEEeCCH-HHHHHHHHHhhccccccccccccCCccc-eeccccccc-----cCCCCHHHHHhcCCCC
Q 020548 217 SMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYET-LMSCSGSST-----SSELNAEEKALAGISA 289 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~ 289 (324)
.-..+.+.++.. .....+.+.|+. .|+ ....+.. +...+.... ...++..+. ...
T Consensus 283 --------~~~~~~i~~~~~~~~R~~l~~~L~~---~gi---~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~----~~~ 344 (374)
T COG0399 283 --------AWHLYTILVDEEGISRDALMESLKE---AGV---GAVVYFRPLHLQPAYRQLGYFPEGDLPNAED----LSE 344 (374)
T ss_pred --------eeeeeEEEecCCCCCHHHHHHHHHh---CCC---CceEEeeccccchhhhcccccccCCCchHHH----Hhh
Confidence 112344555532 445667777775 222 2111111 111110000 011222211 124
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+.+++=+. ..-+++.++.+.+++..+-
T Consensus 345 r~l~LP~~-p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 345 RILSLPLH-PNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred CeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 67888777 7767777788877776653
No 242
>PRK07505 hypothetical protein; Provisional
Probab=99.76 E-value=8.5e-16 Score=139.18 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=93.5
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEE
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 96 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 96 (324)
.|++.+..|++......... + .+.++..++..|++++++++ +++++++++++|+||+|.+.++++|.++|+++|+++
T Consensus 136 ~vi~~~~~~H~s~~~~~~~~-~-~~~~v~~~~~~d~~~l~~~~-~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~l 212 (402)
T PRK07505 136 PHMVFDKNAHASLNILKGIC-A-DETEVETIDHNDLDALEDIC-KTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFL 212 (402)
T ss_pred CEEEEchhhhHhHHhhhhhh-h-cCCeEEEeCCCCHHHHHHHH-hcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEE
Confidence 36676666655432221221 1 24577788888999999998 667789999999999999999999999999999999
Q ss_pred EEcCCCC--cCCC-------CccC---CCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhh
Q 020548 97 VVDNTFS--PLVL-------SPAR---LGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQ 151 (324)
Q Consensus 97 ivD~~~~--~~~~-------~~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~ 151 (324)
|+||+|+ .+.. .... .+.+++++|++|.++++ ||+++ .++++.+.+.....
T Consensus 213 i~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~ 276 (402)
T PRK07505 213 YIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELILRYAG 276 (402)
T ss_pred EEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHHHhCC
Confidence 9999972 2211 1111 24568889999999876 47875 57788888876544
No 243
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.75 E-value=6e-17 Score=144.54 Aligned_cols=277 Identities=18% Similarity=0.176 Sum_probs=175.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++ +++||+|+++..+|.++...+. ..|.+++++|.+ |++++++++ ++++++|++.+
T Consensus 51 ~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~-----~~G~~pv~~Di~~~~~~id~~~~~~~i-~~~t~ai~~~h--- 121 (363)
T PF01041_consen 51 SALHLALRALGLGPGDEVIVPAYTFPATASAIL-----WAGAEPVFVDIDPETLNIDPEALEKAI-TPKTKAILVVH--- 121 (363)
T ss_dssp HHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH-----HTT-EEEEE-BETTTSSB-HHHHHHHH-HTTEEEEEEE----
T ss_pred HHHHHHHHhcCCCcCceEecCCCcchHHHHHHH-----HhccEEEEEeccCCcCCcCHHHHHHHh-ccCccEEEEec---
Confidence 4788888887 6899999999999999998883 489999999875 899999999 89999999764
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCc--cCCCCcEEEeCC--ccccccCCCeeEEEEEc-ChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSP--ARLGADVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~--~~~~~d~~~~S~--sK~~~~~g~r~~G~i~~-~~~~~~~l~~ 148 (324)
..|...|+++|.++|+++|+++|+|.+++.. .... ...--|+.++|| +|.+.... ||+++. ++++.+.++.
T Consensus 122 ~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge---GG~v~~~~~~~~~~~~~ 198 (363)
T PF01041_consen 122 LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGE---GGAVVTNDPELAERARA 198 (363)
T ss_dssp GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS----EEEEESTHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCCC---CeeEEecHHHHHHHhhh
Confidence 6889999999999999999999999998332 2222 222359999998 58886544 677755 5678888887
Q ss_pred hhhhhhhc------------cC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ce-eCCCCCCCchh
Q 020548 149 LHQGALML------------LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KV-LYPGLEDHPHH 212 (324)
Q Consensus 149 ~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~-~~p~~~~~~~~ 212 (324)
+... +.. .| ..++...++..+.++..++..+++.+++.+.+.+.|...+. .. ..+.... .
T Consensus 199 ~~~~-g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~--~- 274 (363)
T PF01041_consen 199 LRNH-GRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAE--R- 274 (363)
T ss_dssp HTBT-TEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTE--E-
T ss_pred hhcc-CcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccc--c-
Confidence 6652 111 11 23677778878888888999999999999999999999875 22 2122100 0
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceecccccccc-----CCCCHHHHHhc
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS-----SELNAEEKALA 285 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ 285 (324)
.....+.+.+++. .....+.+.|.. .|+ .....-...+-..|..... ..++...
T Consensus 275 -----------~~~~~f~i~~~~~~~~~rd~l~~~L~~---~GI-~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae---- 335 (363)
T PF01041_consen 275 -----------SSYYRFPIRLPDEALADRDELVEALRA---RGI-ETRPHYPKPLHRQPVYRSYPYYAPGDLPNAE---- 335 (363)
T ss_dssp -----------BCESSEEEEETCCGCSTHHHHHHHHHH---TTB-EEBCSTSSCGGGSGGGTTGEEEETSSSHHHH----
T ss_pred -----------cccccccccccccccchHHHHHHHHHH---CCC-cccccccCchhhhHHHHhcCccccCCCHHHH----
Confidence 1233456677642 236677777775 333 1111110011101111000 0011111
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+..+.+-|-++ ..-+++.++.+.++++
T Consensus 336 ~l~~r~l~LP~~-~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 336 RLSQRLLSLPIH-PRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHEEEEEHS-TTSCHHHHHHHHHHHH
T ss_pred HHHhCeEECcCC-CCCCHHHHHHHhhccC
Confidence 112466888888 7777778888887763
No 244
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.75 E-value=4.7e-16 Score=131.58 Aligned_cols=232 Identities=21% Similarity=0.311 Sum_probs=153.4
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~ 69 (324)
+||..++.++++|||+++... .-|......+- ..+.. +|+.+..++.. |.+.+++++ ++++|+|++
T Consensus 83 HAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e-~Gi~Y~~v~L~~dg~~D~~~i~~~~-~~~tk~v~I 160 (403)
T PF06838_consen 83 HAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE-FGIKYREVPLTEDGTIDWEAIKKAL-KPNTKMVLI 160 (403)
T ss_dssp HHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG-GT-EEEE--B-TTSSB-HHHHHHHH-HTTEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH-hCceeEEEeecCCCCcCHHHHHHhh-ccCceEEEE
Confidence 478899999999999998644 77888877772 22233 78999888864 899999999 789999999
Q ss_pred ec----CCCCcccccChHHHHHHHHhc--CCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES----ISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~----~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
.- ..-|+-.+.+++++.+++|+. +++++||++|+.|. ..|.+.|+|++.+|+-|..|+.-.+.|||++++++
T Consensus 161 QRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~ 240 (403)
T PF06838_consen 161 QRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKD 240 (403)
T ss_dssp E-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHH
T ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHH
Confidence 75 233444445677777777764 78999999999986 46888899999999999999876678999999999
Q ss_pred HHHHHHHhh--hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+.... ++.+...|.++.... .+.+++..-+....+..+-+......++++|+++. |.... +.
T Consensus 241 lVe~~a~RLTaPGiG~e~G~t~~~~R--~~~QGlFlAP~vV~eAlKgaif~A~~fe~lG~~v~-P~~~~-~R-------- 308 (403)
T PF06838_consen 241 LVERAAYRLTAPGIGKEVGATLGTNR--LMFQGLFLAPHVVGEALKGAIFAAALFEKLGFEVS-PKPDD-PR-------- 308 (403)
T ss_dssp HHHHHHHHHS-TTTGGGSS--TTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEE-S-TTS-----------
T ss_pred HHHHHHhhhcCCccccccccCcchHH--HHHhHHhhchHHHHHHHHHHHHHHHHHHHcCCcCC-CCCCC-CC--------
Confidence 999887543 334455666655322 23334444456666667777888888999999876 54221 11
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccc
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 252 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~ 252 (324)
.--+.++.+.+.+....|++.++...+.
T Consensus 309 -----~DiIQai~l~~~e~l~~FC~~iQ~~sPV 336 (403)
T PF06838_consen 309 -----SDIIQAIELGSPEKLIAFCQGIQAASPV 336 (403)
T ss_dssp -----SSS-EEEE-SSHHHHHHHHHHHHHTSSS
T ss_pred -----CceEEEEECCCHHHHHHHHHHHHhcCCc
Confidence 2235688999999999999999964433
No 245
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.74 E-value=1.9e-15 Score=137.25 Aligned_cols=182 Identities=15% Similarity=0.163 Sum_probs=133.8
Q ss_pred hHHHHHHHc---------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEE
Q 020548 3 AISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 3 ai~~~~~~~---------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v 67 (324)
|+..++.++ ++|||+|+++.++|.++...+. ..|.++++++.+ |++++++++ ++++++|
T Consensus 90 al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~-----~~G~~pv~vdvd~~~~~id~~~le~~i-~~~tkaV 163 (438)
T PRK15407 90 ANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII-----QNGLVPVFVDVELPTYNIDASLLEAAV-SPKTKAI 163 (438)
T ss_pred HHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHHc-CcCCeEE
Confidence 555666554 4889999999999999988774 267887777653 799999999 8899999
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc---cCCCCcEEEeCCc--cccccCCCeeEEEEEc-Ch
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP---ARLGADVVVHSIS--KFISGGADIIAGAVCG-PA 140 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~---~~~~~d~~~~S~s--K~~~~~g~r~~G~i~~-~~ 140 (324)
++++ ++|...++++|.++|+++|+++|+|++|+ +...+. ...| |+.++||+ |.+.... ||+++. ++
T Consensus 164 i~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~~~ge---GG~l~t~d~ 236 (438)
T PRK15407 164 MIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHITMGE---GGAVFTNDP 236 (438)
T ss_pred EEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCccccC---ceEEEECCH
Confidence 9886 46778899999999999999999999983 222222 2223 88888885 5454322 577755 56
Q ss_pred hHHHHHHHhhhhhhh----------------------------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHH
Q 020548 141 NLVNSMMDLHQGALM----------------------------------LLG--PTMNPKVAFELSERIPHLGLRMKEHC 184 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~----------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (324)
++.+.++..... +. ..| ..++...+++.+.++..++...++.+
T Consensus 237 ~l~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~ 315 (438)
T PRK15407 237 LLKKIIESFRDW-GRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARK 315 (438)
T ss_pred HHHHHHHHHHHh-CcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654331 10 011 23666777777778888888889999
Q ss_pred HHHHHHHHHHHhCC
Q 020548 185 HRALIFARRMKKLG 198 (324)
Q Consensus 185 ~~~~~l~~~L~~~~ 198 (324)
++++++.+.|+..+
T Consensus 316 ~~a~~y~~~L~~~~ 329 (438)
T PRK15407 316 ANFAYLKEGLASLE 329 (438)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999998764
No 246
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.74 E-value=1.8e-16 Score=143.46 Aligned_cols=212 Identities=16% Similarity=0.121 Sum_probs=132.0
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCc--c---cc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccc-----c
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPR--A---CN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV-----A 80 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~--~---~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~-----~ 80 (324)
+..+|+..+..|++........... . ++ ..+..++.+|++++++.+ ++++++|+++ |.|++|-+ .
T Consensus 127 ~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aaviiE-Pv~~~gg~~~~~~~ 204 (406)
T PRK12381 127 HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALI-DDQTCAVIVE-PIQGEGGVIPADKA 204 (406)
T ss_pred CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhc-cCCeeEEEEe-CCcCCCCCcCCCHH
Confidence 3478999999998875432111100 0 00 123445556899999999 7789999997 55666653 2
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
.+++|+++|++||+++|+||+|.++.... .....|+ .|++|.+++ |+++ |++++++++++.+..... .
T Consensus 205 ~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~g-G~~i-g~~~~~~~~~~~~~~~~~-~ 279 (406)
T PRK12381 205 FLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALGG-GFPI-GAMLTTEKCASVMTVGTH-G 279 (406)
T ss_pred HHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhhC-CCce-EEEEEcHHHHhhcCCCCC-C
Confidence 47899999999999999999996663211 1224565 579999975 8997 999999998888764332 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.++.++.+.+.++...++.+ ..+...++..++.+++.+.|++.+.+..... +..+.|.++++++
T Consensus 280 ~t~~~~pl~~aaa~a~l~~l-~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~---------------~vrg~Gl~~~~~l 343 (406)
T PRK12381 280 TTYGGNPLASAVAGKVLELI-NTPEMLNGVKQRHDWFVERLNTINARYGLFS---------------EIRGLGLLIGCVL 343 (406)
T ss_pred CCCCCCHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhCCCEE---------------EEecCeEEEEEEe
Confidence 11222222222222222222 1224566778888888888887643211111 1125688999998
Q ss_pred CCH--HHHHHHHHHhhc
Q 020548 234 ETE--EKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~--~~~~~~~~~l~~ 248 (324)
+.. .....+.+.+..
T Consensus 344 ~~~~~~~~~~~~~~l~~ 360 (406)
T PRK12381 344 NAEYAGKAKQISQEAAK 360 (406)
T ss_pred cCchhhHHHHHHHHHHH
Confidence 742 245666666663
No 247
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.74 E-value=3.7e-16 Score=140.32 Aligned_cols=243 Identities=10% Similarity=0.157 Sum_probs=143.6
Q ss_pred CCCCEEEEcCCCchhHH-HHHhhh-c---Ccccce---eEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---
Q 020548 13 SSGGHVVAARTLYGGTH-ALLTHF-F---PRACNI---TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~-~~~~~~-~---~~~~g~---~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 81 (324)
.++++|++.+..|++.. ..+... . ...++. .+.+.+.+|++++++.+ ++++++|++++++|++|...+
T Consensus 108 ~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l-~~~~a~vi~e~v~~~~G~~~~~~~ 186 (375)
T PRK04260 108 TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALV-NKNTAAVMLELVQGESGVLPADKD 186 (375)
T ss_pred cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhc-CCCeEEEEECCeECCCCCcCCCHH
Confidence 34678999998888633 222100 0 000111 12233345899999988 678899999999999998864
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCC--c-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
++++.++|+++|+++|+||+|.++... + .....|++ |+||.+++ |.|+ |++++++++.+.+..... .
T Consensus 187 ~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-g~~~~~~~~~~~~~~~~~-~ 261 (375)
T PRK04260 187 FVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLAN-GVPV-GAMLAKSSLGGAFGYGSH-G 261 (375)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccC-Ccce-EEEEEcHHHHhhcCCCCC-C
Confidence 899999999999999999999665421 1 11245644 79999974 7997 999999988777753222 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHH----HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI----FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
.++.++.+.+.++...+..... +...++..++.+. +.+.+.+++.....+ +.|.++
T Consensus 262 ~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~ 321 (375)
T PRK04260 262 STFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTVR-------------------GLGYMI 321 (375)
T ss_pred CCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-------------------ccceEE
Confidence 1222233332222223322211 1233333344444 444444433211111 368899
Q ss_pred EEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHH
Q 020548 230 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 230 ~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l 309 (324)
+++++. ....+.+.+.. .|++. .|. ..+.+|+++. ...++++++.+
T Consensus 322 ~~~~~~--~~~~~~~~l~~---~Gi~v-----------~~~-----------------~~~~lR~~~~-~~~t~~~i~~~ 367 (375)
T PRK04260 322 GIETTA--DLSQLVEAARD---KGLIV-----------LTA-----------------GTNVIRLLPP-LTLTKEEIEQG 367 (375)
T ss_pred EEEecC--cHHHHHHHHHh---CCCEE-----------ecC-----------------CCCEEEEcCC-CccCHHHHHHH
Confidence 999852 35567777664 33311 110 1367999997 65556666655
Q ss_pred HHHHHh
Q 020548 310 EKALSR 315 (324)
Q Consensus 310 ~~~l~~ 315 (324)
.+.++.
T Consensus 368 l~~l~~ 373 (375)
T PRK04260 368 IAILSE 373 (375)
T ss_pred HHHHHH
Confidence 555543
No 248
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.74 E-value=5.7e-16 Score=131.51 Aligned_cols=250 Identities=14% Similarity=0.195 Sum_probs=165.2
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
||-+|......|.+...-+++ .+++-.....+|+++|++.++. .-+|+|.++++++.+|.+.|+++|.++++
T Consensus 256 pgcei~SD~gNHASMI~GIrn-----s~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah 330 (570)
T KOG1360|consen 256 PGCEIFSDEGNHASMIQGIRN-----SRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH 330 (570)
T ss_pred CCcEEeccccchHHHHHHhhh-----cCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence 555555555555555444421 2333333344689999998853 34799999999999999999999999999
Q ss_pred hcCCEEEEcCCC-CcCC-CCc--------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCC
Q 020548 91 DKGVTVVVDNTF-SPLV-LSP--------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 160 (324)
Q Consensus 91 ~~~~~~ivD~~~-~~~~-~~~--------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~ 160 (324)
+||++.++||++ .++. ... .-...|++.+++.|.||.- ||||.+..++++.++.+..+. ....+
T Consensus 331 ~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcV----GGYIAat~~LvDmiRSyAaGF--IFTTS 404 (570)
T KOG1360|consen 331 KYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCV----GGYIAATRKLVDMIRSYAAGF--IFTTS 404 (570)
T ss_pred HhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccc----cceehhhhhHHHHHHHhcCce--EEecC
Confidence 999999999997 3332 111 1114799999999999876 599999999999999988753 33344
Q ss_pred CCHHHHHHHhcCccc---H--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 161 MNPKVAFELSERIPH---L--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+.+....-+++..+. - ...++.++++..++++.|.+.|+.+. |. -+-++-+.+.+
T Consensus 405 LPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi-~~-------------------pSHIiPv~vgd 464 (570)
T KOG1360|consen 405 LPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVI-PN-------------------PSHIIPVRVGD 464 (570)
T ss_pred CChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCccc-CC-------------------CcceeeeeccC
Confidence 333333333332222 2 23445568889999999999998654 22 13378888876
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
........+.|-. ++++ +...+-+|.... ....+|+... ...+.+..+.|.++|..
T Consensus 465 a~l~~~~sd~Li~--~h~i-------YvQaINyPTV~r--------------G~E~LRiaPT-P~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 465 AALAKQASDILIS--KHNI-------YVQAINYPTVAR--------------GTERLRIAPT-PHHTPQMMNILVNALLD 520 (570)
T ss_pred HHHHHHHHHHHHH--hcCe-------EEEeccCCcccc--------------cceeeecCCC-CCCCHHHHHHHHHHHHH
Confidence 6556555555442 2232 222222343322 2467898887 77788877777777666
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
...
T Consensus 521 vw~ 523 (570)
T KOG1360|consen 521 VWN 523 (570)
T ss_pred HHH
Confidence 543
No 249
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.74 E-value=1.1e-16 Score=138.13 Aligned_cols=260 Identities=16% Similarity=0.226 Sum_probs=166.2
Q ss_pred chHHHHHHHc---cC-C-CCEEEEcCCCchhHH-HHH---------hhhcCcccceeEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQL---CS-S-GGHVVAARTLYGGTH-ALL---------THFFPRACNITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~---~~-~-gd~vl~~~p~y~~~~-~~~---------~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++... .. + .-+||.....|++-. ..+ +.+.|..- .+.+++..|++++++++ +++|.+
T Consensus 111 EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~--g~~~vpfnDi~al~~ai-~~~taA 187 (404)
T COG4992 111 EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP--GFRHVPFNDIEALEAAI-DEDTAA 187 (404)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC--CceecCCCCHHHHHHHh-ccCeEE
Confidence 3555555532 22 2 247888887776532 111 11222211 24566677999999999 789999
Q ss_pred EEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++.+...|.+.+ +++++++|++||+++|.||+|.++...- .....|+++ +.|.+|+ |.++ |.
T Consensus 188 vivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~LgG-G~Pi-gA 263 (404)
T COG4992 188 VIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALGG-GFPI-GA 263 (404)
T ss_pred EEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eeccccC-Cccc-ee
Confidence 999999999999964 7899999999999999999998775321 233567777 9999988 6997 88
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
++.++++.+.+.+..++ +..|+++...++..+....-.-+...++.++..+++.+.|++...+. |-+
T Consensus 264 ~la~~~~~~~~~~G~Hg--STfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~--~~v--------- 330 (404)
T COG4992 264 MLATEEIASAFTPGDHG--STFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRY--PLV--------- 330 (404)
T ss_pred eEEchhhhhcCCCCccc--CCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcC--Cce---------
Confidence 87776666666655552 24444444444333222221223455666777778888887764321 110
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
.+..|.|-++.+++.....+..++..++. .|++. .++ .++.|||.
T Consensus 331 ----~~vRG~GLmiGiel~~~~~a~~~~~~~~~---~gvL~-----------~~a-----------------~~~ViR~~ 375 (404)
T COG4992 331 ----KEVRGRGLMIGIELKEPYRARDIVRALRE---EGVLV-----------LPA-----------------GPNVIRFL 375 (404)
T ss_pred ----eeeecceeEEEEEecCcccHHHHHHHHHH---CCeEE-----------ecC-----------------CCCeEEec
Confidence 03347899999999854356778887774 33322 211 24689988
Q ss_pred eccCC----CHHHHHHHHHHHHHhhh
Q 020548 296 VGYLG----TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 296 ~g~~~----~~~~~~~~l~~~l~~~~ 317 (324)
.. +. +.++.++.|+++++...
T Consensus 376 Pp-L~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 376 PP-LVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred CC-ccCCHHHHHHHHHHHHHHHHHhh
Confidence 77 53 44445566666665543
No 250
>PRK02769 histidine decarboxylase; Provisional
Probab=99.73 E-value=7.9e-16 Score=136.98 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=127.4
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCC---ceEEEEecCCCCcccccChHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGR---TKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~---~~~v~~~~~~nptG~~~~~~~ 84 (324)
.++++|++++.+|++....++. +|++...++. .|+++|++++ +++ |.+|+++.++|++|.+.|+++
T Consensus 108 ~~~~~ii~s~~~H~Sv~ka~~~-----lg~~~~~V~~~~~g~id~~~L~~~i-~~~~~~t~lvv~t~gtt~tG~idpi~~ 181 (380)
T PRK02769 108 FPDGTLYYSKDTHYSVSKIARL-----LRIKSRVITSLPNGEIDYDDLISKI-KENKNQPPIIFANIGTTMTGAIDNIKE 181 (380)
T ss_pred CCCcEEEeCCCceehHHHHHHH-----cCCCCceeccCCCCcCcHHHHHHHH-HhCCCCcEEEEEEeCCCCCcccCCHHH
Confidence 5789999999999999988842 3444333332 2899999999 544 899999999999999999999
Q ss_pred HHHHHHhcC---CEEEEcCCCCcCCCC------ccCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 85 LSRLAHDKG---VTVVVDNTFSPLVLS------PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 85 i~~l~~~~~---~~~ivD~~~~~~~~~------~~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
|.++|+++| +++++|.+|+++... +.+. ++|.+..|.||++++|.+. |+++.+++..+.+.....+
T Consensus 182 I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~--G~l~~r~~~~~~~~~~~~yl 259 (380)
T PRK02769 182 IQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPC--GIVLAKKKYVERISVDVDYI 259 (380)
T ss_pred HHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCc--EEEEEehhhhhhcccCcccc
Confidence 999999998 699999999553221 2222 7999999999999855443 7776666666555321111
Q ss_pred --h-hhccCCCC--CHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 153 --A-LMLLGPTM--NPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 153 --~-~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
. .+..|+.. .....+..+..+ ..+.+..++..++++++.+.|++.+.++
T Consensus 260 ~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~ 315 (380)
T PRK02769 260 GSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPA 315 (380)
T ss_pred CCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 0 01122222 233444444332 3356677778999999999999887744
No 251
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.73 E-value=9.4e-16 Score=125.70 Aligned_cols=222 Identities=18% Similarity=0.229 Sum_probs=143.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCC-CcCC------CCccCCCCcEEEeC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTF-SPLV------LSPARLGADVVVHS 120 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~-~~~~------~~~~~~~~d~~~~S 120 (324)
|.+++. + .+.+.+|+++-|.||||.+. ++.+|..+|++||++++.|++| .+|. ..+....+.+.|.|
T Consensus 170 DF~~l~--i-~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~S 246 (417)
T COG3977 170 DFEHLH--I-GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMS 246 (417)
T ss_pred CHHHcc--c-ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEee
Confidence 666654 2 57899999999999999995 4677788899999999999999 4442 13444578899999
Q ss_pred CccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc--H-HHHHHH-HHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--L-GLRMKE-HCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~~~l~~~L~~ 196 (324)
+|| +|.||.|+ |.++++++++..+..... ......+.+.+..+..+++.-+. + ++.++- |.++.+...+.|++
T Consensus 247 LSK-~GLPG~R~-GIiIane~viqaitnmn~-iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~ 323 (417)
T COG3977 247 LSK-LGLPGSRC-GIIIANEKVIQAITNMNG-IISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRR 323 (417)
T ss_pred hhh-cCCCCcce-eEEEccHHHHHHHHhccc-eeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999 57899996 999999999998877654 33355556666665555543322 2 223332 56666666777766
Q ss_pred C-CC---ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 197 L-GL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 197 ~-~~---~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
. +. .+-.|+ +.-|.|+.+++ +.....++++|+. .| ++..|+.
T Consensus 324 ~lp~~~~~iHkpE-------------------GAIFlWLWf~dLPItt~~LYq~LKa---~G-----------vl~VPG~ 370 (417)
T COG3977 324 YLPEYRCLIHKPE-------------------GAIFLWLWFKDLPITTEELYQRLKA---RG-----------VLMVPGH 370 (417)
T ss_pred hcCccceeeecCC-------------------cceeehhhhccCCCCHHHHHHHHHh---Ce-----------EEEeccc
Confidence 4 32 222233 34455666652 2346678888885 33 3345555
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCC--HHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGT--LDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~--~~~~~~~l~~~l~~~ 316 (324)
.+.-.+.. .+.-.+.++|+|+- .+. .+.-+..|.+.++++
T Consensus 371 ~FFpGl~~----ewpH~hqC~Rmn~~-~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 371 YFFPGLDK----EWPHTHQCMRMNYV-PEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred ccCCCCCC----CCCCccceEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence 55432221 12224688999997 432 233455666666554
No 252
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.73 E-value=7.6e-15 Score=118.77 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=143.2
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh---c---CCceEEEE
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV---Q---GRTKVLYF 69 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~---~---~~~~~v~~ 69 (324)
|=+.++.+++++||.|++....|....-+.. + .|.++..+|.. +++...+.+. + ..+.+.++
T Consensus 88 ~KfavMhal~~~gd~vV~D~~aHYttyvAAE----r-agl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lall 162 (382)
T COG1103 88 AKFAVMHALCKEGDWVVVDSLAHYTTYVAAE----R-AGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALL 162 (382)
T ss_pred hHHHHHHHhccCCCEEEEcCcchHHHHHHHH----h-cCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEE
Confidence 4467788899999999999999887776663 4 78888888753 4555544441 2 34788999
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
+++....|++.|.+.++++|+++|+++++..+| +-+..+..+.++||+++|.||++.. ..++ |++..+.++.+.+.
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAA-s~Pi-Gvl~~~eE~ae~V~ 240 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAA-SAPI-GVLAMSEEWAEIVL 240 (382)
T ss_pred eccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhc-cCCe-eEEeehhHHHHHHH
Confidence 999999999999999999999999999999999 4456677788999999999999976 5665 99999999888876
Q ss_pred Hhhhh-----hhhccCCCCCHHHHHHHhcCcccHHHHHHHH---HHHHHHHHHHHHhCCC
Q 020548 148 DLHQG-----ALMLLGPTMNPKVAFELSERIPHLGLRMKEH---CHRALIFARRMKKLGL 199 (324)
Q Consensus 148 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~~ 199 (324)
....- -.-..|.+........++.+...+.+|+++. .++++++.+.|++++.
T Consensus 241 r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg 300 (382)
T COG1103 241 RRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEKIGG 300 (382)
T ss_pred hhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54310 0112344433333444555666666676663 7789999999999873
No 253
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.72 E-value=8.5e-16 Score=137.77 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=157.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce-eEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
.|++.++.+++++++.+++..-.|+..... ....+ .|. +++.++.+ |+++ + +. ++.|.+++..|.
T Consensus 78 ~~~~~~~~~l~~~~~~~vi~~g~f~~~~~~--~~~~~-~g~~~v~~~~~~~g~~~d~~~----i-~~-~~~V~~~h~~t~ 148 (378)
T PRK03080 78 GAWEMALWSLLGARRVDHLAWESFGSKWAT--DVVKQ-LKLEDPRVLEADYGSLPDLSA----V-DF-DRDVVFTWNGTT 148 (378)
T ss_pred HHHHHHHHhcCCCCcceEEEeCHHHHHHHH--HHHhh-cCCCCceEeccCCCCCCCHhh----c-CC-CCCEEEEecCCc
Confidence 367888888887533334445566653221 11123 577 66666542 4444 3 32 577999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
||...|+++|++ +++|+++++|.++ .+...+.++ ..|++++|.+||+++ +| .|+++.+++.++.+.+...+
T Consensus 149 tG~~~pi~~I~~--~~~g~~~vVDa~q-s~G~~pidv~~iD~~~~s~~K~l~~P~G---~g~l~v~~~~~~~~~p~~~~~ 222 (378)
T PRK03080 149 TGVRVPVARWIG--ADREGLTICDATS-AAFALPLDWSKLDVYTFSWQKVLGGEGG---HGMAILSPRAVERLESYTPAR 222 (378)
T ss_pred cceeccchhhcc--ccCCCeEEEeccc-ccccCCCCHHHCcEEEEehhhhCCCCCc---eEEEEECHHHHHhhhcccCCC
Confidence 999999999999 8899999999997 222223332 379999999999976 45 59999998888877653210
Q ss_pred ---------------hhhccC---CCCCHHHHHH---HhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCC
Q 020548 153 ---------------ALMLLG---PTMNPKVAFE---LSERI---PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLE 207 (324)
Q Consensus 153 ---------------~~~~~~---~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~ 207 (324)
...+.+ +++....... .+..+ ..++.+.++..++++++.++|++.+. .+..+. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~-~ 301 (378)
T PRK03080 223 PIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVAD-P 301 (378)
T ss_pred CCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCC-c
Confidence 000111 2222222211 11111 13556667778889999999998874 433221 1
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC---HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHh
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 284 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
.. ..+.+++|.+++ ... .++...+.. .|+ .+..|+..
T Consensus 302 ~~--------------~s~~i~~~~~~~~~~~~~-~~~~~~l~~---~~i-~v~~g~~~--------------------- 341 (378)
T PRK03080 302 AT--------------RSNTSVTLDFVDAQAAVD-AAAVAKLLR---ENG-AVDIEPYR--------------------- 341 (378)
T ss_pred cc--------------cCccEEEEEcCCchHHHH-HHHHHHHHH---cCC-eecccccc---------------------
Confidence 00 134588888875 222 234444432 121 22222210
Q ss_pred cCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 285 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 285 ~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
..++.+|+|++ ..++.++++.+.++|+.+-+
T Consensus 342 --~~~~~vRis~~-~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 342 --DAPNGLRIWCG-PTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred --CCCCcEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 01368999999 99999999999999887643
No 254
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.72 E-value=1.1e-15 Score=138.49 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=153.7
Q ss_pred CCEEEEcCCCchhH-HHHHhhhcC----cccc---eeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC---
Q 020548 15 GGHVVAARTLYGGT-HALLTHFFP----RACN---ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~-~~~~~~~~~----~~~g---~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~--- 81 (324)
.++|+.....|++. ...+..... ..++ ..+..++..|++++++.+++ +++++|+++++++++|...+
T Consensus 128 ~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~ 207 (401)
T TIGR01885 128 QAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDG 207 (401)
T ss_pred CCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHH
Confidence 36777788888753 333321000 0011 12344556689999998842 56789999999999999976
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|.++|++||+++|+||+|.++... ......|+++ ++|.++++++++ |++++++++++.+..... .
T Consensus 208 ~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~g~~~i-g~v~~~~~i~~~~~~~~~-~ 283 (401)
T TIGR01885 208 YLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSGGVYPV-SAVLADDDVMLTIKPGEH-G 283 (401)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccCCCCCc-EEEEEcHHHHhhccCCCC-C
Confidence 899999999999999999998555321 1123567775 679998866897 999999998887754222 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.++.++.+.+.++...+..+.. +...++..++.+++.+.|++++..+. +. ..+.|.++.+.+
T Consensus 284 ~t~~~~p~~~~aa~a~L~~i~~-~~l~~~~~~~~~~~~~~L~~l~~~~~-~~----------------~~g~g~~~~i~~ 345 (401)
T TIGR01885 284 STYGGNPLACAVAVAALEVLEE-EKLAENAEKLGEIFRDQLKKLPKPII-TE----------------VRGRGLLNAIVI 345 (401)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhccCCce-eE----------------EeecCeeEEEEe
Confidence 1233332222222222221111 12335566778888888988753221 11 114678888888
Q ss_pred CCH---HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 234 ETE---EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 234 ~~~---~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.. ....++.+.+.. .|++. .| ..++.+|++.. ...++++++.+.
T Consensus 346 ~~~~~~~~~~~l~~~l~~---~Gv~v-----------~~-----------------~~~~~lRi~p~-l~~t~~~i~~~l 393 (401)
T TIGR01885 346 DESKTGRTAWDLCLKLKE---KGLLA-----------KP-----------------THGNIIRLAPP-LVITEEQLDEGL 393 (401)
T ss_pred ccCcchhHHHHHHHHHHh---CCEEE-----------Ee-----------------cCCCEEEEeCC-ccCCHHHHHHHH
Confidence 632 256777777763 34311 11 11478999998 666666666666
Q ss_pred HHHHh
Q 020548 311 KALSR 315 (324)
Q Consensus 311 ~~l~~ 315 (324)
++|++
T Consensus 394 ~~l~~ 398 (401)
T TIGR01885 394 EIIKK 398 (401)
T ss_pred HHHHH
Confidence 66654
No 255
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.72 E-value=7.2e-16 Score=136.92 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=163.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHH-hhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~-~l~~~~~~~v~~~~~~n 74 (324)
.|+.+++.+++.+||++++......+.. +...+.+ +|.. ..+..+ +..++++ .+ ++++++|.+++..+
T Consensus 78 ~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~-~g~~-~~~~~~~~~g~~~~~~~~~~~l-~~~~~~V~~th~eT 152 (360)
T PRK05355 78 LQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKK-YGEV-NVAASSEDDGFTYIPPLDEWQL-SDDAAYVHYTSNET 152 (360)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHH-hCCc-eEEecccccCCCCCCChhhccC-CCCCCEEEEccCCC
Confidence 4688888999999998888776554433 2333334 5644 222211 2334444 67 66899999999999
Q ss_pred Cccccc-ChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh-h
Q 020548 75 PTLAVA-NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-H 150 (324)
Q Consensus 75 ptG~~~-~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~-~ 150 (324)
.||... |+++| +|++++||.++ ++...+..+ .|++++|.+|++|++| .|+++.++++++.+.+. .
T Consensus 153 stGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~--~d~~~~ssqK~lgP~G---lg~l~~s~~~l~~~~~~~~ 221 (360)
T PRK05355 153 IDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSK--FGLIYAGAQKNIGPAG---LTIVIVREDLLGRALPSIP 221 (360)
T ss_pred cceEecCccccc------CCCcEEEEcCccccCccCCHHH--ccEEEEeccccccCCc---eEEEEECHHHHhhcccCCC
Confidence 999997 77766 79999999997 222233333 4699999999998777 69999998888776552 1
Q ss_pred hh------hh-hccCCCCCHHHHHHHhcCc-----c-cHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHH
Q 020548 151 QG------AL-MLLGPTMNPKVAFELSERI-----P-HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 151 ~~------~~-~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~ 216 (324)
.+ .. ....+++.....+.+...+ . .++.+.+++.+.+++++++|++.+. ....+. .
T Consensus 222 ~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~-----~----- 291 (360)
T PRK05355 222 SMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAP-----E----- 291 (360)
T ss_pred hHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCh-----h-----
Confidence 00 00 0112333333222222211 2 4667778889999999999999884 111110 0
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
...+.+++|.+++......+.+.+. +.|+++ ..| . . ..+.+|+|+
T Consensus 292 ------~rs~~v~sf~~~~~~~~~~~~~~~~---~~Gi~~-~~~----------~--------------~-~~g~vRiS~ 336 (360)
T PRK05355 292 ------DRSRMNVPFTLADEELDKKFLAEAK---AAGLVG-LKG----------H--------------R-SVGGMRASI 336 (360)
T ss_pred ------hcCCcEEEEEcCChHHHHHHHHHHH---HCCCcc-cCC----------C--------------C-ccCcEEEEC
Confidence 0134578999886533345544443 244421 111 0 0 136899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhc
Q 020548 297 GYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+ .+++.++++.|.++|+.+.++
T Consensus 337 ~-~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 337 Y-NAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999887543
No 256
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.71 E-value=6.2e-16 Score=136.21 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=136.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcC-----cccceeEEEecCC------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP-----RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~-----~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~ 70 (324)
.|...++.++++|||+|+..++.++++...-..... .-...+...++.+ |.+++++.+...++++|++.
T Consensus 97 ~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G 176 (399)
T PF00464_consen 97 QANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICG 176 (399)
T ss_dssp HHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE
T ss_pred HHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEEC
Confidence 367788889999999999999888766432110000 0011223333322 89999998867899999998
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-----CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-----LVLSPARLGADVVVHSISKFISGGADIIAGAVCGP----- 139 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-----~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~----- 139 (324)
....| ...|+++++++|++.|+++++|.++ .+ +..+|++. +|++.+|+||+|.||. +|+|+.+
T Consensus 177 ~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~GPr---ggiI~~~~~~~~ 250 (399)
T PF00464_consen 177 ASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLRGPR---GGIILTNKGSKN 250 (399)
T ss_dssp -SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-SSS----EEEEES-SEEE
T ss_pred chhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEEEeeccccccccC---ceEEEEcCCccc
Confidence 75554 5689999999999999999999998 33 35688876 9999999999997665 7999888
Q ss_pred ---------hhHHHHHHHhhhhhhhccCCCCCHHHHHH--HhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 140 ---------ANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 140 ---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
+++.+.+..... .+...++.+...++.+ +.+.. ....++.++..+|++.|.+.|.+.|+++..-.
T Consensus 251 ~~~~~~~~~~~l~~~I~~avf-P~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~gg-- 327 (399)
T PF00464_consen 251 VDKKGKEIDEELAEKIDSAVF-PGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGG-- 327 (399)
T ss_dssp E-TTS-EEEHHHHHHHHHHHT-TTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS--
T ss_pred cCCcccccHHHHHHHhccccC-CCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECC--
Confidence 778888876654 1112223333222222 12212 23567888889999999999999999776422
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
+ ...++++.+. +...+...+++..+
T Consensus 328 -T---------------d~H~vlvd~~~~~~~g~~a~~~Le~~gI 356 (399)
T PF00464_consen 328 -T---------------DNHQVLVDLRSFGIDGKEAEKALEEAGI 356 (399)
T ss_dssp -----------------SSSEEEEEGGGGTS-HHHHHHHHHHTTE
T ss_pred -C---------------CCCeEEEEecccccchHHHHHHHHhcCe
Confidence 1 2347888875 33455666666554
No 257
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.71 E-value=4.1e-15 Score=126.91 Aligned_cols=220 Identities=20% Similarity=0.238 Sum_probs=153.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHh--hhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLT--HFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~--~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|...++.++++|||+|+-.+..++++...-. .+..+ . .+...++.+ |.|++++.....++|+|+.-...
T Consensus 99 ~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~-~-~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~Sa 176 (413)
T COG0112 99 QANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGK-L-FNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSA 176 (413)
T ss_pred HHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccce-e-EEeEecccccccCccCHHHHHHHHHHhCCCEEEECccc
Confidence 46778889999999999999988877765441 11111 1 233333332 89999998867899999976533
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSM 146 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l 146 (324)
. -...|.++++++|++.|+++++|.++ .++ ..+|+.. +|++++|.||+|.||. ||+|.++. ++.+++
T Consensus 177 Y--~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlrGPr---GG~Il~~~eel~kki 250 (413)
T COG0112 177 Y--SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLRGPR---GGIILTNDEELAKKI 250 (413)
T ss_pred c--ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCCCCC---ceEEEeccHHHHHHh
Confidence 3 36689999999999999999999997 444 4678887 9999999999997664 89998874 888888
Q ss_pred HHhhhhhhhccCCCCCHHHHHH--HhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+... .+...|+.+...++-. +.+.+ ..+..+.++..+|++.|.+.|.+.|+++..-. +.
T Consensus 251 n~aVF-Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGg---Td------------- 313 (413)
T COG0112 251 NSAVF-PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGG---TD------------- 313 (413)
T ss_pred hhhcC-CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCC---cc-------------
Confidence 77543 2223333333222221 22222 23567888889999999999999999876433 22
Q ss_pred CcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 224 GFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 224 ~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
.-++.+++. +...++..+++..+
T Consensus 314 --nHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 314 --NHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred --ceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 225666665 35667777777664
No 258
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.71 E-value=5.3e-16 Score=137.96 Aligned_cols=254 Identities=13% Similarity=0.081 Sum_probs=152.4
Q ss_pred chHHHHHHHccC---CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------C-HHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------D-HEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d-~~~l~~~l~~~~~~~v~~~~ 71 (324)
.|++.++.+++. +||+|+.... ...+.....+ .|+++..++.+ + ++..+..+ ++++++|.+++
T Consensus 74 ~a~~~~~~~l~~~~~~~~~i~~g~~-----~~~~~~~a~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~lV~~~h 146 (355)
T cd00611 74 GQFAAVPLNLLGDKGTADYVVTGAW-----SAKAAKEAKR-YGGVVVIVAAKEEGKYTKIPDVETWDL-APDAAYVHYCS 146 (355)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHH-----HHHHHHHHHh-cCCCcEEEecccccCCCCCCCHhhcCC-CCCCCEEEEeC
Confidence 478888888877 5555554222 2211122224 67777776643 3 23333345 67899999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
..|.||...+ ++++.+|++++||.++ +....+..+++ +++.|.+|+||++| .|+++.++++.+.+.+.
T Consensus 147 ~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G---~g~l~~~~~~~~~~~~~ 216 (355)
T cd00611 147 NETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAG---VTVVIVRKDLLGKARKI 216 (355)
T ss_pred CcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCc---eEEEEECHHHHhhcccC
Confidence 9999999843 4455699999999997 33333433334 56677999998777 69999998888766542
Q ss_pred hhh---hh----h-ccCCCCCHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHH
Q 020548 150 HQG---AL----M-LLGPTMNPKVAFELSERIP------HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 150 ~~~---~~----~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~ 214 (324)
... .. . ...+++.....+.+...++ .++.+.+++.++++++.++|++. ++. ..+. . +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~-~~~~-~--~~--- 289 (355)
T cd00611 217 TPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFY-RGPV-D--KR--- 289 (355)
T ss_pred CCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcccc-ccCC-C--HH---
Confidence 110 00 0 1123343322222222222 35566677899999999999998 431 0111 0 00
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
...+.+++|.+++......+. +++.+.|++ ...+ | + ..+.+|+
T Consensus 290 --------~rs~~vvsf~~~~~~l~~~~~---~~~~r~G~~-~~~~-------------~-----------~-~~g~vR~ 332 (355)
T cd00611 290 --------ARSRMNVPFRLGKEELEKEFL---KEAEAAGMI-GLKG-------------H-----------R-SVGGIRA 332 (355)
T ss_pred --------HcCceEEEEEcCChhhhHHHH---HHHHHCCCc-ccCC-------------C-----------c-ccCeEEE
Confidence 013356899987641112222 232334441 1111 1 0 1368999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhh
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|++ .+++.++++.|.++|+++.
T Consensus 333 S~~-~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 333 SIY-NALSLEGVQALADFMKEFQ 354 (355)
T ss_pred Ecc-CCCCHHHHHHHHHHHHHHh
Confidence 999 9999999999999998874
No 259
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.70 E-value=2.2e-16 Score=125.46 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=103.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEecCC-----CH--HHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDIS-----DH--EMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~~~-----d~--~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++++++++|++++++|++.. ..+. . .|.++..++.+ +. +.+++....++++++++++++
T Consensus 28 ~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (170)
T cd01494 28 GANEAALLALLGPGDEVIVDANGHGSRYWVAAE----L-AGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNT 102 (170)
T ss_pred HHHHHHHHHhCCCCCEEEEeecccceehhhHHH----h-cCCEEEEeccCCCCccchhhhhhhhccccCceEEEEEecCc
Confidence 5788888888888999999999999887 4442 3 67888877654 11 245444435789999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC-----CccCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|++|...|.++|+++|+++|+++|+|++|..+.. .+...++|+++.|++|++++++ +|+++.+
T Consensus 103 ~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~---~G~l~~~ 170 (170)
T cd01494 103 TSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEG---GGVVIVK 170 (170)
T ss_pred CCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCCCc---eEEEEeC
Confidence 9999999999999999999999999999954432 2445589999999999998754 5988753
No 260
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.1e-15 Score=121.96 Aligned_cols=295 Identities=22% Similarity=0.265 Sum_probs=193.8
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~ 69 (324)
+||.+++..+++|||+.+... .-|....+.+- ..+.. +|+.+..++.. |.+.+...+ +++||+|.+
T Consensus 94 HAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~d-fgi~Y~~v~Lt~~gkiD~~~v~~~i-~~~tkli~I 171 (416)
T COG4100 94 HAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKD-FGIKYKAVPLTADGKIDIQAVKTAI-SDRTKLIGI 171 (416)
T ss_pred hHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHH-hCcceeecccccCCcccHHHHHHhc-CccceEEEE
Confidence 588999999999999987665 55766666652 22223 67777777764 899999999 899999998
Q ss_pred ec----CCCCcccccChHHHHHHHHhc--CCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES----ISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~----~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
.- ..-|+-.+.++++++++.++. +++++||++|+.|. ..|-+.|+|++.+|+-|.-|+.-...|||+.++++
T Consensus 172 QRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~ 251 (416)
T COG4100 172 QRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE 251 (416)
T ss_pred EeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHH
Confidence 64 455666667888888888875 69999999998886 46778899999999999998866667899999999
Q ss_pred HHHHHHHhh--hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++...-.. ++.++..|.++.+. ..+.+++...+....+..+-+......|.+.|+.+. |.. ..+..+++
T Consensus 252 ~ve~~~yRlTaPGIG~e~Gat~~~l--~~myqGlFlAPhvv~qa~Kga~fta~~le~lg~~~~-P~~-~~kRtDlI---- 323 (416)
T COG4100 252 LVEAAAYRLTAPGIGREGGATLYSL--REMYQGLFLAPHVVSQAVKGAHFTARFLEKLGFPVN-PKY-DAKRTDLI---- 323 (416)
T ss_pred HHHhhceeeecCCccccccccHHHH--HHHHhhhccchHHHHHHhhhhHHHHHHHHHcCCCCC-Ccc-cccccchh----
Confidence 998875332 22333444443332 223334433445555566677777888888888654 442 22333333
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccc----ccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
-++.+.+.++.-.|+.+++...+.+.+ .....++++-+.+.+-++.+..+-+.....++.+.++-..
T Consensus 324 ---------Qavkf~~~eKmIaFcqaiQ~aSPi~a~v~p~p~~MPGYed~ViMAaGTFIqGasiElsADgPiRePY~~yv 394 (416)
T COG4100 324 ---------QAVKFGSKEKMIAFCQAIQAASPIDAHVQPEPAYMPGYEDDVIMAAGTFIQGASIELSADGPIREPYIAYV 394 (416)
T ss_pred ---------hheecCCHHHHHHHHHHHhhcCCcccccCcCcccCCCcccceeeeccceeccceeEEecCCCCCCCeEEEE
Confidence 378899999999999999964444432 2234566655554444443222211111112233344444
Q ss_pred eccCCCHHHHHHHHHHHHHhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~ 316 (324)
=| -.+-+...-.+.++++++
T Consensus 395 QG-Glt~~Hvkiav~~a~~~~ 414 (416)
T COG4100 395 QG-GLTYEHVKIAVERALDAL 414 (416)
T ss_pred cC-CccHHHHHHHHHHHHHHh
Confidence 44 444555555566666554
No 261
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.70 E-value=1.3e-14 Score=132.81 Aligned_cols=194 Identities=18% Similarity=0.098 Sum_probs=120.1
Q ss_pred hHHHHHHHccCCCCEEEEcCC---CchhHHHHHhhhcCccccee--EEEecCC------CHHHHHHhhhcCCceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAART---LYGGTHALLTHFFPRACNIT--TTFVDIS------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p---~y~~~~~~~~~~~~~~~g~~--~~~~~~~------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
|...++.++++|||+|+..+. .|.++............+.. ...+..+ |.+++++++...++++|++.
T Consensus 112 AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~- 190 (475)
T PLN03226 112 ANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG- 190 (475)
T ss_pred HHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-
Confidence 667788899999999999553 33332221111000001211 1122222 89999998854678877663
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-C----CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH--
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLV-- 143 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~-- 143 (324)
.++ +|...|+++|.++|+++|+++++|+++ .++. . .|.+ ++|++++|+||+++||. ||+++.+++..
T Consensus 191 ~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~ 265 (475)
T PLN03226 191 ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPP 265 (475)
T ss_pred cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-CCeEEEecCcccccCCC---ceEEEEchhhccc
Confidence 233 678889999999999999999999998 4443 1 2333 69999999999996554 68887776543
Q ss_pred ---------HH---HHHhhhhhhhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 144 ---------NS---MMDLHQGALMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 144 ---------~~---l~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+. +..... .. +.++ +.....+.+ +..+ ...+.+.++..++++++.+.|++.|+++..+.
T Consensus 266 ~~~g~~~~~d~~~~i~~a~~-~~-~~g~-p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~ 341 (475)
T PLN03226 266 KGQGEGAVYDYEDKINFAVF-PG-LQGG-PHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGG 341 (475)
T ss_pred ccCCCccHHHHHHHhccccC-Cc-cCCC-chHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC
Confidence 11 111111 11 2222 222222222 2212 12445677789999999999999888776443
No 262
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.70 E-value=2.4e-15 Score=132.93 Aligned_cols=255 Identities=12% Similarity=0.036 Sum_probs=162.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec---------CCCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD---------ISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~---------~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
.|+++++.+++++||++++......+.. +...+.+ +|. +..+. ..++++++ + ++++++|.+++.
T Consensus 67 ~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~-~g~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~th~ 139 (349)
T TIGR01364 67 GQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKK-YGV-VNVVASGKEGNYTKIPDPSTWE--I-SEDAAYVHYCAN 139 (349)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHH-hCC-cEEEeccccCCCCCCCCHHhcC--C-CCCCCEEEEcCC
Confidence 4788999999989999888876554433 2344444 676 43333 12555444 3 568999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.+.||...+ ++++.++++++||.++ ++...+..+ .|++++|.+|+||+|| .|+++.++++++.+.+..
T Consensus 140 ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~--~d~~~~ssqK~lgP~G---lg~l~~s~~~~~~~~~~~ 209 (349)
T TIGR01364 140 ETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSK--FGLIYAGAQKNIGPAG---LTVVIVRKDLLGRASRIT 209 (349)
T ss_pred CCcccEecc-----eecccCCCeEEEEccccccCccCCHHH--ccEEEEecccccCCCc---eEEEEECHHHHhhcccCC
Confidence 999999876 6677789999999996 223333333 4599999999998777 599999988887664321
Q ss_pred hh----h--h--hccCCCCCHHHHHHHhcCc-----c-cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHH
Q 020548 151 QG----A--L--MLLGPTMNPKVAFELSERI-----P-HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELL 215 (324)
Q Consensus 151 ~~----~--~--~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~ 215 (324)
.. . . ....+++.....+.+...+ . .++.+.+++.++++++.+.|++.+ +...... +.
T Consensus 210 ~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~----~~---- 281 (349)
T TIGR01364 210 PSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVD----PR---- 281 (349)
T ss_pred CCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCC----HH----
Confidence 00 0 0 0111233333222222111 2 366777888999999999999985 3221110 00
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
.....+++|.+++......+.+.+. +.|+ ++..|.. ..+.+|+|
T Consensus 282 -------~rs~~v~sf~~~~~~~~~~~~~~~~---~~Gi-~~~~~~~-------------------------~~g~vRvS 325 (349)
T TIGR01364 282 -------NRSRMNVVFTLGNEELEKRFLKEAE---ERGL-VSLKGHR-------------------------SVGGMRAS 325 (349)
T ss_pred -------HcCCeEEEEecCChhHhHHHHHHHH---HCCC-cccCCcc-------------------------ccCeeEEE
Confidence 0133578899875322234434333 3443 3222210 13689999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++ .+++.++++.|.++|+.+.+
T Consensus 326 ~~-~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 326 IY-NAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred Cc-CCCCHHHHHHHHHHHHHHHH
Confidence 99 99999999999999998764
No 263
>PLN00144 acetylornithine transaminase
Probab=99.70 E-value=2.6e-15 Score=134.59 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=93.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc-----ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc--C--hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR-----ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA--N--IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~-----~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~--~--~~ 83 (324)
.+|+.....|++........... .++ -.+..++..|++++++.++.+++++|++++.+||.|... . ++
T Consensus 112 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~ 191 (382)
T PLN00144 112 TEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQ 191 (382)
T ss_pred ceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHH
Confidence 57899998888765333211100 000 123556667899999988556899999999999966553 2 78
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+|+++|++||+++|+||+|+++... ......| +.|++|.+++ |.++ |+++.++++++.+..
T Consensus 192 ~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~-G~pi-g~v~~~~~~~~~~~~ 259 (382)
T PLN00144 192 GLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAG-GLPI-GAVLVTEKVASAINP 259 (382)
T ss_pred HHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEecccccC-Ccce-EEEEEcHHHHhccCC
Confidence 9999999999999999999766322 1223466 5669999976 7997 999999999888754
No 264
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.70 E-value=1e-15 Score=125.06 Aligned_cols=251 Identities=14% Similarity=0.175 Sum_probs=160.2
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh---cCCceEEEEecCCCCcccccChH
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~~~ 83 (324)
++.+++.|.|.|......|.+...-++ + -.+...+ |.-+++..++ +.+.++|+....-+..|.+.|++
T Consensus 143 ~feail~pedAvfSDeLNhASIIdGir-L-----ckry~h~---dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ 213 (417)
T KOG1359|consen 143 AFEAILTPEDAVFSDELNHASIIDGIR-L-----CKRYRHV---DVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLE 213 (417)
T ss_pred HHHHhcChhhhhhccccccchhhhhhH-H-----Hhhhccc---hhHHHHHHHHHhhhheEEEEEecceeccCCCcccHH
Confidence 334445555555555555554444431 1 1112222 3444444331 55788999999999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCCc-----c---C--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLSP-----A---R--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~~-----~---~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+|.+++++||+++++||+++.+++.+ . . -++|++.++++|.+|+.. |||..+|..++..++....++
T Consensus 214 ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~li~llrqr~Rpy 290 (417)
T KOG1359|consen 214 EISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKPLISLLRQRSRPY 290 (417)
T ss_pred HHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChhHHHHHHhcCCce
Confidence 99999999999999999983332211 1 1 158999999999998655 799999999999998765543
Q ss_pred hhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 154 LMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
...+++.+..........+ .-...+.+.+.+.+++++..+..|+.+...+ -++..
T Consensus 291 --lFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~--------------------hPI~p 348 (417)
T KOG1359|consen 291 --LFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGAS--------------------HPICP 348 (417)
T ss_pred --eecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecCCC--------------------CCccc
Confidence 3333333221111111111 1224456678888999999998888765432 23667
Q ss_pred EEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 231 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.+.+...+.++.+.+-. .|+ +.-.+.+|..+ ...-.||+.+. .-.++++++++-
T Consensus 349 v~lGda~lA~~~ad~lLk---~Gi-------~Vigfs~PvVP--------------~gkariRVqiS-AaHt~edid~~i 403 (417)
T KOG1359|consen 349 VMLGDARLASKMADELLK---RGI-------YVIGFSYPVVP--------------KGKARIRVQIS-AAHTEEDIDRLI 403 (417)
T ss_pred eecccHHHHHHHHHHHHh---cCc-------eEEeecCCcCC--------------CCceEEEEEEe-hhcCHHHHHHHH
Confidence 778777778888888774 333 22222333332 12357999888 777888888887
Q ss_pred HHHHhh
Q 020548 311 KALSRM 316 (324)
Q Consensus 311 ~~l~~~ 316 (324)
+++..+
T Consensus 404 ~Af~~v 409 (417)
T KOG1359|consen 404 EAFSEV 409 (417)
T ss_pred HHHHHH
Confidence 777655
No 265
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.69 E-value=2.8e-15 Score=146.15 Aligned_cols=247 Identities=17% Similarity=0.167 Sum_probs=165.8
Q ss_pred HHHHHHHc-cCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 4 ISSVLMQL-CSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 4 i~~~~~~~-~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
.+.+++++ .++ +|+|++++.+|+.+...++..... .|++++.++.++ + +.++++..+++..| |.+|.+.
T Consensus 151 ~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~G~ev~~~~~~~--d----~~~~~~~~vlvq~p-~~~G~i~ 222 (954)
T PRK05367 151 AEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEP-LGIEVVVGDAAK--A----LDHDDVFGVLLQYP-GTSGEVR 222 (954)
T ss_pred HHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHh-CCCEEEEecCcc--C----CCcccEEEEEEecC-CCCeeec
Confidence 34444444 344 489999999999999998776666 899999987643 1 21346666767766 6799999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccc-----cccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF-----ISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~-----~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
|+++|+++||++|+++++|..+ .....+|.++|+|++++|.+|| ||||+ +|+++.++++.+.+....-+.
T Consensus 223 d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~---aGflavr~~~~r~lpgrivG~ 299 (954)
T PRK05367 223 DYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPH---AAYFAVRDAYKRSMPGRIVGV 299 (954)
T ss_pred cHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCC---EEEEEECHHHHhhCCCCeeee
Confidence 9999999999999999999855 3344578889999999999999 88876 699999988877764321110
Q ss_pred h--------------------hcc-CC-CC-CHHHHHHHh-------cCcccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 154 L--------------------MLL-GP-TM-NPKVAFELS-------ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 154 ~--------------------~~~-~~-~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
. ++. +. +. ........+ .+...+....++...++.++.+.|++.+.++..
T Consensus 300 s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~ 379 (954)
T PRK05367 300 SVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVH 379 (954)
T ss_pred ecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 0 111 11 11 111111111 122334444556688888999999887765443
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHH
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (324)
+. ....+.++++ .+..++.+++.. .|+.. .
T Consensus 380 ~~-------------------~f~~~~~~~~--~~~~~i~~~l~~---~gi~~---~----------------------- 409 (954)
T PRK05367 380 DS-------------------FFDTLTVEVG--GDAAAVLARALA---AGINL---R----------------------- 409 (954)
T ss_pred CC-------------------CCCeEEEeCC--CCHHHHHHHHHH---CCcee---c-----------------------
Confidence 32 1235667764 235567777664 33311 0
Q ss_pred hcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 284 LAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 284 ~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
-..++.+|+|++ ..+++++++.|.++|.
T Consensus 410 --~~~~~~l~is~~-e~~t~~did~l~~~l~ 437 (954)
T PRK05367 410 --RVDDDHVGISLD-ETTTREDLAALLAVFG 437 (954)
T ss_pred --cccCCEEEEEec-ccCCHHHHHHHHHHHc
Confidence 112467999999 8999999999999986
No 266
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.69 E-value=1.6e-15 Score=135.01 Aligned_cols=263 Identities=8% Similarity=0.000 Sum_probs=158.5
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccCh
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 82 (324)
|++.++.+++.+ +.+++....|...........+. .+ ++..++.+..+.++..+ ++++++|.+++..|.||...|+
T Consensus 72 a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~lV~~~h~et~tG~~~pi 147 (361)
T TIGR01366 72 FWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPW-LG-EPIIVTADPGSAPEPQA-DPGVDVIAWAHNETSTGVAVPV 147 (361)
T ss_pred HHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhc-cC-CceEEecCCCCCCCCcc-CCCCCEEEEcccCCccceeccc
Confidence 677777777643 45556566676555555444332 23 44444433223333444 6789999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh------h--
Q 020548 83 PELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG------A-- 153 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~------~-- 153 (324)
++| +|++|+++++|.++ .+...+.++ .+|++++|.+|+++++++ + ++++.++++++++.....+ +
T Consensus 148 ~~I---~~~~g~~~iVDavq-s~g~~~idv~~~D~~~~s~~K~lg~~~G-l-~~~~~s~~~~~~~~~~~~~~~~~p~~~d 221 (361)
T TIGR01366 148 RRP---EGSDDALVVIDATS-GAGGLPVDIAETDVYYFAPQKNFASDGG-L-WLAIMSPAALERIEAIAASGRWVPEFLS 221 (361)
T ss_pred ccc---cccCCCeEEEEcCc-cccCCCCCHHHCCEEEEEchhhcCCCCc-e-EEEEECHHHHhhhhcccCCCCCCchhhh
Confidence 888 58899999999996 333333333 389999999999999864 3 5566777777666532110 0
Q ss_pred ----h-----hccCCCCCHHHHHH---Hhc---CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHH
Q 020548 154 ----L-----MLLGPTMNPKVAFE---LSE---RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 154 ----~-----~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~ 217 (324)
. ....+++.....+. ++. ....++.+.+++.+.++++.++|++.+. ++..+. ....
T Consensus 222 ~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~-~~~~------- 293 (361)
T TIGR01366 222 LPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTD-PGKR------- 293 (361)
T ss_pred HHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC-hhhc-------
Confidence 0 01122333322211 121 1113556667889999999999999885 333221 0000
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
......++| +...+...+.+.+.. .|+ .+. +.. . .+.++.+|+|.+
T Consensus 294 -----s~~v~~v~~--~~g~~~~~v~~~L~~---~gI-~i~----------~~~---~----------~l~~~~vRis~~ 339 (361)
T TIGR01366 294 -----SQVVGTIDF--VDDIDAATVAKILRA---NGI-VDT----------EPY---R----------KLGRNQLRVAMF 339 (361)
T ss_pred -----ccceEEEEC--CCccCHHHHHHHHHH---CCC-eec----------cCc---c----------ccCCCcEEEEcC
Confidence 011234444 333345566666654 233 111 100 0 112468999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhh
Q 020548 298 YLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~~~ 318 (324)
..++.++++.+.++|+.+.+
T Consensus 340 -~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 340 -PAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred -CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 267
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.69 E-value=3.7e-15 Score=134.39 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=128.8
Q ss_pred CEEEEcCCCchhHHHHHhhhc--Cc---ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFF--PR---ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~--~~---~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
.+|+.....|++.....-... +. -++ ..+..++.+|++.+++.+..+++++|++++.+...|...+ ++
T Consensus 132 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~ 211 (408)
T PRK04612 132 RVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLA 211 (408)
T ss_pred cEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHH
Confidence 468998888887543221110 00 000 1234556669999999984456778887765554444432 78
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccC
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~ 158 (324)
+|.++|+++|+++|+||+|.++.... ...+.+..+.+++|.+++ |+++ |+++.++++.+.+..... ..++.+
T Consensus 212 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~-G~pi-ga~~~~~~~~~~~~~~~~-~~t~~~ 288 (408)
T PRK04612 212 RVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGG-GFPI-GAMLAGPKVAETMQFGAH-GTTFGG 288 (408)
T ss_pred HHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcC-CCce-EEEEECHHHHhhhcCCCc-CCCCCC
Confidence 99999999999999999996664322 122455666779999975 7997 999888888777754332 122332
Q ss_pred CCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
++. .++++...++.+ +...++..++.+++.+.|++...+..... +..|.|.++.+++..
T Consensus 289 -~p~--~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~---------------~vrg~Gl~~~i~~~~~ 350 (408)
T PRK04612 289 -NPL--AAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFA---------------QVRGRGLMLGAVLAPA 350 (408)
T ss_pred -CHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCee---------------eeeccceEEEEEecCc
Confidence 222 222222222222 24455667777778777776532221111 223689999999852
Q ss_pred -HHHHHHHHHHhhc
Q 020548 236 -EEKANRLMNYLQN 248 (324)
Q Consensus 236 -~~~~~~~~~~l~~ 248 (324)
......+++.+..
T Consensus 351 ~~~~a~~i~~~l~~ 364 (408)
T PRK04612 351 HAGQAGAILDLAAE 364 (408)
T ss_pred hhhHHHHHHHHHHH
Confidence 2345666666663
No 268
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.68 E-value=9.7e-15 Score=132.99 Aligned_cols=97 Identities=13% Similarity=0.207 Sum_probs=73.8
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~ 118 (324)
++++++.+. .+++++|++++.++..|...+ +++|.++|+++|+++|+||+|+++.... . ..+.+..+
T Consensus 184 ~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi 263 (425)
T PRK08088 184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADL 263 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCE
Confidence 566888773 256889999986665566544 8899999999999999999996653221 1 22444557
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.|+||.++ +|.|+ ||+++++++++.+....
T Consensus 264 ~s~sK~l~-~G~ri-g~v~~~~~~~~~~~~~~ 293 (425)
T PRK08088 264 TTFAKSIA-GGFPL-AGVTGRAEVMDAIAPGG 293 (425)
T ss_pred EEEecccc-CCCcc-eeeEecHHHHhhcCCCC
Confidence 88999997 58997 99999999998886543
No 269
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.67 E-value=3.7e-14 Score=117.00 Aligned_cols=194 Identities=16% Similarity=0.179 Sum_probs=144.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+++++..++.|||+|++....--+ ..+..+..+ +|+++..++.+ .++.+.+++.++++++|++++...-|
T Consensus 79 ~g~E~al~N~lePgd~vLv~~~G~wg--~ra~D~~~r-~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 79 SGWEAALVNLLEPGDNVLVVSTGTWG--QRAADCARR-YGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSST 155 (385)
T ss_pred chHHHHHHhhcCCCCeEEEEEechHH--HHHHHHHHh-hCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccc
Confidence 57888999999999998887743322 222234445 89999888665 79999999978899999999999999
Q ss_pred ccccC-hHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 77 LAVAN-IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 77 G~~~~-~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
|...| ++.+.++||+|+++++||.+- ++..+...++++|+......|.+++|.+- +.++.++...+.++...+.
T Consensus 156 gV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GL--siisfS~ka~~~~~~rK~~~ 233 (385)
T KOG2862|consen 156 GVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGL--SIISFSDKALEAIRDRKTKP 233 (385)
T ss_pred cccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCc--ceeecCHHHHHHHhhccCCc
Confidence 99999 778889999999999999985 44455666779999999999999987544 6677787778888764431
Q ss_pred ---------hhhccCC---------CCCHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 020548 153 ---------ALMLLGP---------TMNPKVAFELSER-----IPHLGLRMKEHCHRALIFARRMKKLGLK 200 (324)
Q Consensus 153 ---------~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 200 (324)
.+.+++. +++....+.+... -+.+++..++++++.+++...|+++|.+
T Consensus 234 ~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq 304 (385)
T KOG2862|consen 234 VSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQ 304 (385)
T ss_pred eEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 1112221 2222221111111 2347789999999999999999999884
No 270
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.67 E-value=4.5e-15 Score=135.37 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=96.8
Q ss_pred hHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhh------------cC---cccceeEEEecCCCHHHHHHhhhc--CC
Q 020548 3 AISSVLMQL--CSSGGHVVAARTLYGGTHALLTHF------------FP---RACNITTTFVDISDHEMVNSAIVQ--GR 63 (324)
Q Consensus 3 ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~------------~~---~~~g~~~~~~~~~d~~~l~~~l~~--~~ 63 (324)
|+..+++.. ....++|+...+.|++....+... .+ ...+.....++..|++++++.+.+ ++
T Consensus 116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 195 (423)
T TIGR00713 116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEE 195 (423)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCc
Confidence 455555432 124589999999999965432110 00 000112334445589999998832 57
Q ss_pred ceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 64 TKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 64 ~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
+++|++++ ++| +|.+.+ +++|.++|++||+++|+||+|.++.... .....|++ +++|.++ +|+|+
T Consensus 196 ~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~-~G~pi 271 (423)
T TIGR00713 196 IAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG-GGLPV 271 (423)
T ss_pred EEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc-CCCce
Confidence 89999975 555 788865 7899999999999999999996663211 12235644 6999998 58997
Q ss_pred EEEEEcChhHHHHHHH
Q 020548 133 AGAVCGPANLVNSMMD 148 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~ 148 (324)
|++++++++++.+..
T Consensus 272 -g~v~~~~~i~~~~~~ 286 (423)
T TIGR00713 272 -GAFGGRREIMERLAP 286 (423)
T ss_pred -eeeeEHHHHHHhhCc
Confidence 999999999888864
No 271
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.67 E-value=2e-14 Score=129.79 Aligned_cols=206 Identities=14% Similarity=0.026 Sum_probs=138.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
-+|+++..+|.+....++ .+|++++.++.+ |+++|++++ ++++.+|+++..+|.||.+.|+++|+++|
T Consensus 139 ~~ii~s~~~H~sv~ka~~-----~lg~~v~~i~~d~~~~~vd~~~L~~~i-~~~t~lV~~t~g~t~tG~idpi~~I~~i~ 212 (431)
T TIGR01788 139 PNLVMGSNVQVCWEKFAR-----YFDVELREVPMDPGRYVIDPEQVVEAV-DENTIGVVCILGTTYTGEYEDVKALNDAL 212 (431)
T ss_pred cEEEEcCcchHHHHHHHH-----HcCceeEEEecCCCceeeCHHHHHHHH-hhCCeEEEEEeCCCCCcccCCHHHHHHHH
Confidence 379999999999988773 256666665542 789999999 78899999999999999999999999999
Q ss_pred Hhc------CCEEEEcCCCCcCC----CC--cc---CCCCcEEEeCCcccc-ccCCCeeEEEEEcCh-h-HHHHHHHhhh
Q 020548 90 HDK------GVTVVVDNTFSPLV----LS--PA---RLGADVVVHSISKFI-SGGADIIAGAVCGPA-N-LVNSMMDLHQ 151 (324)
Q Consensus 90 ~~~------~~~~ivD~~~~~~~----~~--~~---~~~~d~~~~S~sK~~-~~~g~r~~G~i~~~~-~-~~~~l~~~~~ 151 (324)
+++ |+++++|.+|+++. .. +. ..++|.+..|.||++ ++.| .|+++.++ + +.+.+.....
T Consensus 213 ~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g---~G~l~~r~~~~l~~~~~~~~~ 289 (431)
T TIGR01788 213 DEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG---VGWVIWRDEEALPEELIFHVN 289 (431)
T ss_pred HHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC---cEEEEEeChHHcchhheeccc
Confidence 999 99999999996432 11 11 226889999999987 4444 37776543 2 2232211100
Q ss_pred hhh------hccCCCC--CHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhc
Q 020548 152 GAL------MLLGPTM--NPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 152 ~~~------~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.. +..++.. .....+..+.. ...+....++..++++++.+.|++.+ +++..|.
T Consensus 290 yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~--------------- 354 (431)
T TIGR01788 290 YLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG--------------- 354 (431)
T ss_pred ccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC---------------
Confidence 000 0111111 11222333222 23466777888999999999999987 4655442
Q ss_pred cCCCcceEEEEEeCC----HHHHHHHHHHhhc
Q 020548 221 KEYGFGGLLCLDMET----EEKANRLMNYLQN 248 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~----~~~~~~~~~~l~~ 248 (324)
...++++|++++ ..+...+.+.|..
T Consensus 355 ---~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~ 383 (431)
T TIGR01788 355 ---SGIPLVAFKLKDDADPGYTLYDLSHRLRE 383 (431)
T ss_pred ---CCceEEEEEeCCCCCCCcCHHHHHHHHHH
Confidence 135689999874 2334566666663
No 272
>PLN03032 serine decarboxylase; Provisional
Probab=99.66 E-value=1.5e-14 Score=128.01 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=126.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC--CceEEEEecCCCCcccccChHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++.+|+++.-.|++....++ .+|..+..++.+ |+++|++++.+. ++.+|+++..+|++|.+.|+++|+
T Consensus 110 ~~~~vi~s~~~H~Sv~kaa~-----~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~ 184 (374)
T PLN03032 110 PDGILYASRESHYSVFKAAR-----MYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRIL 184 (374)
T ss_pred CCcEEEeCCCceeHHHHHHH-----HcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHH
Confidence 45689999999999998874 245545455443 899999999332 577888899999999999999999
Q ss_pred HHHHhcC-----CEEEEcCCCCcCCCC--------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 87 RLAHDKG-----VTVVVDNTFSPLVLS--------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 87 ~l~~~~~-----~~~ivD~~~~~~~~~--------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
++|+++| +++++|.+|++.... ....++|.++.|.||+++.|-+ +|+++.+++..+.+.....+.
T Consensus 185 ~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g--~G~ll~r~~~~~~~~~~~~Yl 262 (374)
T PLN03032 185 RILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMP--CGVALTRKKHVKALSQNVEYL 262 (374)
T ss_pred HHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcC--eEEEEEEchhhHhhccCCccc
Confidence 9999996 589999999443211 1123689999999999874433 377777666665543221110
Q ss_pred ----hhccCCCC--CHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 154 ----LMLLGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 154 ----~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
.+..|+-. ....++..+. +.+.+.+.+++..++++++.+.|++.+..+
T Consensus 263 ~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~ 318 (374)
T PLN03032 263 NSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTC 318 (374)
T ss_pred CCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 11222222 2334444433 345577888889999999999999987743
No 273
>PLN02624 ornithine-delta-aminotransferase
Probab=99.66 E-value=1.1e-14 Score=133.85 Aligned_cols=246 Identities=17% Similarity=0.224 Sum_probs=145.5
Q ss_pred EEEEcCCCchhHHHHHhh----------hcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC---
Q 020548 17 HVVAARTLYGGTHALLTH----------FFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~----------~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~--- 81 (324)
.|+.....|++....... +.+.. ..+..++..|++.+++.++. +++++|++++++|++|.+.|
T Consensus 168 ~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~ 245 (474)
T PLN02624 168 IIVSCCGCFHGRTLAAISMSCDNEATRGFGPLL--PGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDG 245 (474)
T ss_pred EEEEECCCcCCCCHHHhhcCCCccccccCCCCC--CCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHH
Confidence 577777778765322211 11110 12344556689999998842 56899999999999999876
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|.++|++||+++|+||+|.++.... .....|+++ ++|.++++++++ |+++.+++++..+.+... .
T Consensus 246 ~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~--lsK~lggG~~pi-gav~~~~~i~~~~~~~~~-~ 321 (474)
T PLN02624 246 YLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVI--LGKALGGGVIPV-SAVLADKDVMLCIKPGEH-G 321 (474)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEE--ecccccCCCCcc-eeeeecHHHHhHhccCCc-C
Confidence 9999999999999999999996653211 123467666 689999877897 999988888777654332 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.+++++.+...++...+..+.. ....++..++.+.+.+.|++...+. |.... ...+.|.++.+.+
T Consensus 322 ~T~~g~pl~~aaa~aaLe~l~~-~~l~~~~~~~~~~l~~~L~~l~~~~--~~~i~------------~vrg~G~~~~i~l 386 (474)
T PLN02624 322 STFGGNPLASAVAMAALQVVQD-EKLAERSAKLGQELRDQLQKIQKQF--PKLIK------------EVRGRGLLNAVVL 386 (474)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhC--CCceE------------EEEeeEEEEEEEe
Confidence 1222322222222222221111 1233344555666666666542111 11000 0114677888888
Q ss_pred CC----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHH
Q 020548 234 ET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 234 ~~----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l 309 (324)
+. ......+.+.+.. .|++. .|. .++.+||++. ...++++++.+
T Consensus 387 ~~~~~~~~~a~~~~~~L~e---~GV~v-----------~p~-----------------~~~~lR~~p~-l~~t~e~id~~ 434 (474)
T PLN02624 387 NSPKLGPVSAYDVCLKLKE---RGLLA-----------KPT-----------------HDTIIRLAPP-LSISEDELQEC 434 (474)
T ss_pred cCCCcChHHHHHHHHHHHh---CCeEE-----------ecC-----------------CCCEEEEECC-ccCCHHHHHHH
Confidence 63 2345667777653 34311 111 1478999987 65555555555
Q ss_pred HHHHHh
Q 020548 310 EKALSR 315 (324)
Q Consensus 310 ~~~l~~ 315 (324)
.+.|++
T Consensus 435 l~~L~~ 440 (474)
T PLN02624 435 SKALSD 440 (474)
T ss_pred HHHHHH
Confidence 554443
No 274
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.65 E-value=6.5e-14 Score=119.30 Aligned_cols=183 Identities=12% Similarity=0.090 Sum_probs=122.9
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-CCceEEEE-ecCCCCcccccC-
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-GRTKVLYF-ESISNPTLAVAN- 81 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-~~~~~v~~-~~~~nptG~~~~- 81 (324)
..|...|.+++|+|+++..++. . .|.++..++.- |.+.+.+.+++ +.-.+|++ ..+|||||.-++
T Consensus 117 ~~~~~~vwis~PtW~NH~~If~----~-aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~ 191 (396)
T COG1448 117 FFPDATVWISDPTWPNHKAIFE----A-AGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTE 191 (396)
T ss_pred hCCCceEEeCCCCcHhHHHHHH----h-cCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCH
Confidence 4566789999999999999985 2 67777665542 78888877743 33346666 458999999864
Q ss_pred --hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----------CCC-CcEEEeCCccccccCCCeeEEEEE--cChhHHHHH
Q 020548 82 --IPELSRLAHDKGVTVVVDNTFSPLVLSPA----------RLG-ADVVVHSISKFISGGADIIAGAVC--GPANLVNSM 146 (324)
Q Consensus 82 --~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----------~~~-~d~~~~S~sK~~~~~g~r~~G~i~--~~~~~~~~l 146 (324)
..+|+++.++.+.+.++|-+|.+|..... ..+ --+++.|+||.||.-|-|+|++.+ .+.+....+
T Consensus 192 ~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v 271 (396)
T COG1448 192 EQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRV 271 (396)
T ss_pred HHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHH
Confidence 66888888999999999999987754311 112 269999999999999999844442 344444444
Q ss_pred HHhhhhhhhccCCCCCHHH---HHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 147 MDLHQGALMLLGPTMNPKV---AFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
........+..-++|.... .+..+.+ ...+...++|+.++|+.+++.|++++.
T Consensus 272 ~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~ 334 (396)
T COG1448 272 LSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGA 334 (396)
T ss_pred HHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4322212222233333222 2223322 123556777889999999999999643
No 275
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.65 E-value=2e-14 Score=129.28 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=130.1
Q ss_pred hHHHHHHHcc--C-CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcC---CceEEE
Q 020548 3 AISSVLMQLC--S-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQG---RTKVLY 68 (324)
Q Consensus 3 ai~~~~~~~~--~-~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~---~~~~v~ 68 (324)
++.+++.++- + +||+|+++.-+|.+....+ ...|.++++++. .|++++++++ ++ +..+++
T Consensus 136 al~laL~alr~~~~~gd~VI~p~~th~S~~kAi-----~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aI-t~~~~kai~~V 209 (444)
T TIGR03531 136 SLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAI-----STAGFEPRVIETVLDGDELTTDVEDIERAI-EEIGPDNILCV 209 (444)
T ss_pred HHHHHHHHcCCcCCCCCEEEEECcChHHHHHHH-----HHcCCeEEEeeeeecCcCCCcCHHHHHHHH-HhccCCCEEEE
Confidence 3445555543 2 5899999999999988887 347888888883 1899999999 54 455666
Q ss_pred EecC-CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCC-CcEEEeCCccccccCCCeeEEEEEc-
Q 020548 69 FESI-SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLG-ADVVVHSISKFISGGADIIAGAVCG- 138 (324)
Q Consensus 69 ~~~~-~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~-~d~~~~S~sK~~~~~g~r~~G~i~~- 138 (324)
+.++ .+++|...|+++|+++|++||+++|+|++|+.... .....| +|++++|+||++..|++ ||+++.
T Consensus 210 v~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~ 287 (444)
T TIGR03531 210 LSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIYSF 287 (444)
T ss_pred EEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCC--EEEEEEC
Confidence 6555 45566889999999999999999999999954221 122333 69999999999988664 366644
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
++++.+.+.....+ ...+++.+ .++. ...+.+.+.+.++++.++++++.+.|++..
T Consensus 288 d~el~~~i~~~y~g---~~~~s~~~-~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~ 345 (444)
T TIGR03531 288 DENFIQEISKSYPG---RASASPSL-DVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLA 345 (444)
T ss_pred CHHHHHHHHHhccC---CCCChHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888765331 11222322 2332 223456678888889999999999988763
No 276
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.64 E-value=3e-14 Score=129.15 Aligned_cols=250 Identities=15% Similarity=0.141 Sum_probs=153.0
Q ss_pred CEEEEcCCCchhHHHHHhhhcC-----ccc---ceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccC-
Q 020548 16 GHVVAARTLYGGTHALLTHFFP-----RAC---NITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN- 81 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~-----~~~---g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~- 81 (324)
.+|+.....|++.......... ..+ ...+..++.+|.+++++.++. +++.+|++++.+...|...+
T Consensus 164 ~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~ 243 (442)
T TIGR03372 164 FTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243 (442)
T ss_pred cEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCC
Confidence 5788889888876433221100 001 112355666688888877732 56899999999988898877
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~ 150 (324)
++++.++|++||+++|+||++.++... -.....|+++ ++|.+++ | .++ |.++.++++++.+....
T Consensus 244 ~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~-G~~Pi-gavv~~~~i~~~~~~~~ 319 (442)
T TIGR03372 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG-GVMPI-GATIATEAVFSVLFDNP 319 (442)
T ss_pred HHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC-Ccccc-eEEEecHHHHHhhhccC
Confidence 899999999999999999999666321 1223578776 9999976 5 576 77778888887774221
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.......++++...+++ +..++.++ ...++..+.-+++.+.|++...+ +|.... +..|.|.+
T Consensus 320 ~~~~~T~~gnp~~~Aaa--~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~--~~~~i~------------~vRG~Gl~ 383 (442)
T TIGR03372 320 FLHTTTFGGNPLACAAA--LATINELLEKNLPAQAAIKGDFLLDGFQQLAAE--YPDLII------------EARGKGLL 383 (442)
T ss_pred ccccCCCCCCHHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh--CCCceE------------EEecceEE
Confidence 10111223333333332 22233322 23344556666677776654221 111000 22368999
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+.+++.+......+.+.+.. .|++. .+. +...+.+|+++. ..-++++++.
T Consensus 384 ~giel~~~~~~~~i~~~l~~---~Gvl~-----------~~~---------------~~~~~~lr~~Pp-l~~t~~~id~ 433 (442)
T TIGR03372 384 MAIEFRDNEIGYAFAKELFQ---QNILV-----------AGT---------------LNNAKSIRIEPP-LTITIEQCAL 433 (442)
T ss_pred EEEEeCChHHHHHHHHHHHH---CCcEE-----------eec---------------CCCCCEEEEECC-cccCHHHHHH
Confidence 99999855455667777664 33311 110 112368999999 7777777777
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
+.+++++
T Consensus 434 ~~~~l~~ 440 (442)
T TIGR03372 434 VIKAAKD 440 (442)
T ss_pred HHHHHHH
Confidence 7777654
No 277
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.64 E-value=1.9e-14 Score=130.29 Aligned_cols=251 Identities=13% Similarity=0.122 Sum_probs=146.8
Q ss_pred CCEEEEcCCCchhHHHHHhhhc-----Ccccce---eEEEecC--------CCHHHHHHhhhc-----CCceEEEEecCC
Q 020548 15 GGHVVAARTLYGGTHALLTHFF-----PRACNI---TTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESIS 73 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~-----~~~~g~---~~~~~~~--------~d~~~l~~~l~~-----~~~~~v~~~~~~ 73 (324)
..+|+.....|++......... ...++. .+..++. ++++.+++.+.+ +++++|++++.+
T Consensus 125 r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~ 204 (412)
T TIGR02407 125 RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQ 204 (412)
T ss_pred CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEecccc
Confidence 3678888888887654332110 010111 2233333 236778887732 467999999999
Q ss_pred CCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCC-------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLV-------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~-------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
++.|... | +++|.++|+++|+++|+||+++++. ........|+++ ++|++++.|.++ |+++.++++
T Consensus 205 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G~pi-gav~~~~~~ 281 (412)
T TIGR02407 205 GEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYGLPL-ALTLIKPEL 281 (412)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhccCCccce-eEEEEchhh
Confidence 9999864 2 7899999999999999999997663 222344678775 789997658997 999888775
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHH-HHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVA-FELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+..... . ...++++...++ ...+.. +.. ....++..+..+++.+.|++..... |....
T Consensus 282 -~~~~~~~~-~-~T~~gnpl~~aaa~a~l~~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~--~~~~~------------ 343 (412)
T TIGR02407 282 -DVWKPGEH-N-GTFRGNNLAFVTATAALEYYWSD-DAFEKAVQRKSEIIQERLDRIVAEY--PELIK------------ 343 (412)
T ss_pred -hccCCCcc-C-CCCCccHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhhC--CCceE------------
Confidence 44322211 1 122233332222 222221 111 2233444555566666655421110 10000
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~ 300 (324)
...+.|.++++++++......+...+.. .|++. .+. +..++.||++.. ..
T Consensus 344 ~vrg~Gl~~~l~l~~~~~~~~~~~~~~~---~Gv~v-----------~~~---------------~~~~~~lr~~p~-l~ 393 (412)
T TIGR02407 344 QVRGRGLMQGIECGDGDLAGKIAKAAFE---NGLII-----------ETS---------------GPNDEVIKLLPP-LT 393 (412)
T ss_pred eeecceeEEEEEecChHHHHHHHHHHHH---CCCEE-----------ecc---------------CCCCCEEEEECC-CC
Confidence 1125788999999865556677777663 33311 110 112478999999 77
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
.++++++.+.++++..
T Consensus 394 ~t~~~i~~~~~~l~~~ 409 (412)
T TIGR02407 394 IDEETLQQGLDILEQA 409 (412)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777776666554
No 278
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.64 E-value=2.7e-14 Score=138.86 Aligned_cols=250 Identities=19% Similarity=0.146 Sum_probs=158.9
Q ss_pred hHHHHHHHc-cCCC--CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 3 AISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~-~~~g--d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
+.+.+++++ +++| |+|++++.+|+.+...++..... .|++++.++.++.+ .. .+.+..+++..| |.+|.+
T Consensus 177 aaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~-~GieV~~v~~~~~~----~~-~~~v~~vlvq~P-~~~G~v 249 (993)
T PLN02414 177 AAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADG-LGLEVVVADEKDFD----YS-SGDVCGVLVQYP-ATDGEV 249 (993)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhh-cCCEEEEecchhhc----cc-cCceEEEEEecC-CCCeEE
Confidence 344444444 3444 78999999999999999877766 89999998754322 12 334555655555 459999
Q ss_pred cChHHHHHHHHhcCCEEEE--cCCCCcCCCCccCCCCcEEEeCCcccc-----ccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 80 ANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKFI-----SGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~~-----~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.|+++|.++||++|+++++ |........+|.++|+|+++++.+||. ||| . .|+++.++++.+.+-...-+
T Consensus 250 ~dv~~I~~~ah~~GaL~iVaad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP--~-aGflavr~~~~r~~PgriVG 326 (993)
T PLN02414 250 LDYAEFVKNAHANGVKVVMATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGP--H-AAFLATSQEYKRLMPGRIIG 326 (993)
T ss_pred cCHHHHHHHHHHcCCEEEEEECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCC--C-eeEEEECHHHHhhCCCcccC
Confidence 9999999999999999999 433222223577889999999999997 443 3 49999988876644211111
Q ss_pred h--------------------hhc-cCCC-C-C--HHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 153 A--------------------LML-LGPT-M-N--PKVAFEL-----SERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 153 ~--------------------~~~-~~~~-~-~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
. .++ .+.+ . . .+.+.+. ..+...+....++..+++.++.+.|++.|.++.
T Consensus 327 ~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~ 406 (993)
T PLN02414 327 VSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQ 406 (993)
T ss_pred cccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 0 000 1111 1 0 1111110 111133444456678888999999988776543
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.+. ....+.|.++. ..++.+++.. .|+ .+.
T Consensus 407 ~~~-------------------~f~~vt~~~~~---~~~v~~~L~~---~gI---~l~---------------------- 436 (993)
T PLN02414 407 SLP-------------------FFDTVKVKCSD---ADAIADAAAK---VGI---NLR---------------------- 436 (993)
T ss_pred CCC-------------------CcCeEEEecCC---HHHHHHHHHH---CCC---eeE----------------------
Confidence 332 12367777753 2556666653 222 110
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++.+|+|++ ..+++++++.|.++|...
T Consensus 437 ---~~~~~~lrvs~~-e~~T~edId~L~~~l~~~ 466 (993)
T PLN02414 437 ---VVDANTVTVSFD-ETTTLEDVDKLFKVFAGG 466 (993)
T ss_pred ---EecCCeEEEEee-ccCCHHHHHHHHHHHccc
Confidence 011367999999 999999999999999644
No 279
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.64 E-value=4.8e-14 Score=126.88 Aligned_cols=245 Identities=14% Similarity=0.144 Sum_probs=145.5
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc-----ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR-----ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~-----~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
.+|+..+..|++.....-..... .++ ..+...+..|++++++.+ ++++++|+++++++..|...+ ++
T Consensus 125 ~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epv~~~gG~~~~~~~~l~ 203 (395)
T PRK03715 125 YEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLI-TDKTVAVMLEPVQGEGGVIPATREFMQ 203 (395)
T ss_pred cEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHc-CCCceEEEEeCCcCCCCCccCCHHHHH
Confidence 57888888887653222111110 000 012223345899999999 678999999999999998876 99
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
+|.++|+++|+++|+||+++++.. .-....+|+++ ++|.+++ |.++ |.+++++++.. +..... ..++
T Consensus 204 ~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t--~gK~lg~-G~p~-~av~~~~~i~~-~~~~~~-~~T~ 277 (395)
T PRK03715 204 QLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMT--LGKGIGG-GVPL-AALLAKAEVAV-FEAGDQ-GGTY 277 (395)
T ss_pred HHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceee--ehhhhhC-Ccce-EEEEEcccccc-ccCCCc-CCCC
Confidence 999999999999999999976632 11233567755 8899987 6886 77777777642 211111 1122
Q ss_pred cCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 157 LGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
++. +..++.++..++.+ +...++..++.+++.+.|++...+...+. ..|.|.++.+++.
T Consensus 278 -~g~--pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~----------------vrG~Glm~~i~l~ 338 (395)
T PRK03715 278 -NGN--PLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEG----------------ERGEGLLRALLLG 338 (395)
T ss_pred -CCC--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCCcCe----------------EEcceeEEEEEec
Confidence 222 33333333333332 23456667777788887776432111111 1257889999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+. ....+.+.+......|++. . ...++.+|+++. ...++++++.+.++|+
T Consensus 339 ~~-~~~~~~~~~~~~~~~Gi~~-----------~-----------------~~~~~~lR~~p~-l~~t~~ei~~~~~~l~ 388 (395)
T PRK03715 339 KD-IGPQIVEKARDMQPDGLLL-----------N-----------------APRPNLLRFMPA-LNVTTEEIDQMIAMLR 388 (395)
T ss_pred Cc-hHHHHHHHHHhccCCCEEE-----------e-----------------ecCCCEEEEeCC-cccCHHHHHHHHHHHH
Confidence 42 2233333333211113211 0 011367999999 7777777777666665
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
+.
T Consensus 389 ~~ 390 (395)
T PRK03715 389 SV 390 (395)
T ss_pred HH
Confidence 54
No 280
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.62 E-value=1.9e-13 Score=116.73 Aligned_cols=241 Identities=16% Similarity=0.145 Sum_probs=138.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh-cCCceEEEEec-CCCCcccccChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV-QGRTKVLYFES-ISNPTLAVANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~-~~~~~~v~~~~-~~nptG~~~~~~~i~~l~ 89 (324)
=+.+++.|.|..+..+++ .+|++++.|++. |.+.+++.++ ++.+|.+++.+ -+||||.+++-+-+.++|
T Consensus 125 vKfLCPvPGYDRHFai~E-----~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA 199 (425)
T PF12897_consen 125 VKFLCPVPGYDRHFAITE-----HFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLA 199 (425)
T ss_dssp -EEEEEES--HHHHHHHH-----HCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHH
T ss_pred ceEEecCCCchHHHHHHH-----hhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHh
Confidence 479999999999999985 489999999874 9999999873 57889888855 899999998755444444
Q ss_pred ----HhcCCEEEEcCCC--CcCCCC-cc----CC----------CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 90 ----HDKGVTVVVDNTF--SPLVLS-PA----RL----------GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 90 ----~~~~~~~ivD~~~--~~~~~~-~~----~~----------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
.+.+..|+.|++| .++..+ +. +. +..+...|+||.- .+|..+ +++.++++-++.+++
T Consensus 200 ~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGv-a~~aaS~~Nl~~~~~ 277 (425)
T PF12897_consen 200 AMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGV-AFFAASEANLAWIKK 277 (425)
T ss_dssp HS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS--EEEEE-HHHHHHHHH
T ss_pred cCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcce-eeeecCHHHHHHHHH
Confidence 4579999999999 444211 11 11 4679999999965 346665 999888877777766
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcc-cHHHHHHHH----HHHHHHHHHHHHhC-----CC-ceeCCCCCCCchhHHHHH
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEH----CHRALIFARRMKKL-----GL-KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~~L~~~-----~~-~~~~p~~~~~~~~~~~~~ 217 (324)
... ..+.+....+|+....++...+ .+...++++ ..+.+.+.+.|++. +. .+..|.
T Consensus 278 ~~~-~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~------------ 344 (425)
T PF12897_consen 278 HLS-VQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK------------ 344 (425)
T ss_dssp HHH-HH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S------------
T ss_pred Hhc-CceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC------------
Confidence 544 2224445577777777777766 566555554 44455555555543 33 677776
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC--CCCeEEEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMS 295 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iR~s 295 (324)
+|+|++|...+. .+.++++..+. .|+.-...|.. +| +|. .+..||+.
T Consensus 345 -------GGYFIsld~~~G-~AkrvV~lake---AGV~LT~AGAt-----fP---------------yg~DP~D~nIRiA 393 (425)
T PF12897_consen 345 -------GGYFISLDVLDG-TAKRVVELAKE---AGVALTPAGAT-----FP---------------YGKDPRDSNIRIA 393 (425)
T ss_dssp -------BSS-EEEEESTT--HHHHHHHHHH---TTEE---TTTT-----SG---------------GG--TTS-EEEE-
T ss_pred -------CceEEEEecCCC-hHHHHHHHHHH---hCceeCCCCCC-----CC---------------CCCCCCCCcEEec
Confidence 899999998753 35666666554 33321111211 11 122 25789999
Q ss_pred eccCCCHHHHHHH
Q 020548 296 VGYLGTLDQRWSQ 308 (324)
Q Consensus 296 ~g~~~~~~~~~~~ 308 (324)
.. +...+|+...
T Consensus 394 PS-~P~leel~~A 405 (425)
T PF12897_consen 394 PS-YPSLEELETA 405 (425)
T ss_dssp -S-SS-HHHHHHH
T ss_pred CC-CCCHHHHHHH
Confidence 99 7766665433
No 281
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.62 E-value=5.5e-14 Score=128.31 Aligned_cols=214 Identities=13% Similarity=0.143 Sum_probs=130.0
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc--c------cceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccC-
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR--A------CNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN- 81 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~--~------~g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~- 81 (324)
.+|+.....|++........... . ....+..++.+|.+++++.++. +++.+|++++.+...|.+.+
T Consensus 171 ~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp 250 (459)
T PRK11522 171 FTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPP 250 (459)
T ss_pred cEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCC
Confidence 46888888888754332111100 0 0011334555688888888732 46889999999998999876
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~ 150 (324)
++++.++|++||+++|+||++.++.. .-.....|+++ ++|.+++ | .++ |.++.++++++.+....
T Consensus 251 ~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lgg-G~~Pi-gav~~~~~i~~~~~~~~ 326 (459)
T PRK11522 251 EGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILC--LAKALGG-GVMPI-GATIATEEVFSVLFDNP 326 (459)
T ss_pred HHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEE--echhhhC-CCccc-eeEEEcHHHHHHhccCC
Confidence 89999999999999999999966632 11223578775 8999986 5 576 77777777777654211
Q ss_pred hhhhhccCCCCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 151 QGALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
.......++++...+++. .+..+.. +...++..++.+++.+.|+++..+ +|.... +..|.|.++
T Consensus 327 ~~~~~T~~gnp~~~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~i~------------~VrG~Gl~~ 391 (459)
T PRK11522 327 FLHTTTFGGNPLACAAALATINVLLE-QNLPAQAEQKGDYLLDGFRQLARE--YPDLVQ------------EARGKGMLM 391 (459)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHh--CCCcee------------eEEeceeEE
Confidence 101112223333333222 2222221 234566677777787777765321 121000 223678999
Q ss_pred EEEeCCHHHHHHHHHHhhc
Q 020548 230 CLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 230 ~~~l~~~~~~~~~~~~l~~ 248 (324)
.+++.+.+....+.+.+..
T Consensus 392 giel~~~~~~~~i~~~l~~ 410 (459)
T PRK11522 392 AIEFVDNEIGYNFASEMFR 410 (459)
T ss_pred EEEecCchHHHHHHHHHHH
Confidence 9999755455667776664
No 282
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.61 E-value=6.7e-14 Score=127.04 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=95.1
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccc-cC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAV-AN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~-~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~ 116 (324)
++.+++.++ .+++++|++++.++..|.. .+ +++|.++|+++|+++|+||+|.++.... .....|+
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDi 262 (421)
T PRK06777 183 LSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262 (421)
T ss_pred HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCE
Confidence 666777773 2468999999999988865 34 8899999999999999999997663211 1223676
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+ +++|.++ +|+++ |++++++++++.+..... ..+++++.+...++...+..+.. +...++..++.+++.+.|++
T Consensus 263 v--~~sK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~L~~~~~-~~l~~~~~~~g~~l~~~L~~ 336 (421)
T PRK06777 263 I--TMAKSLG-GGMPI-SAVVGRAEVMDAPAPGGL-GGTYAGNPLAVAAALAVLDVIAE-EKLCQRALILGAHLVEVLEK 336 (421)
T ss_pred E--eeehhhc-CCCce-EEEEEcHHHHhccCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 5 5999998 58997 999999998887764433 22233333333233223322221 34556667777888888876
Q ss_pred C
Q 020548 197 L 197 (324)
Q Consensus 197 ~ 197 (324)
.
T Consensus 337 l 337 (421)
T PRK06777 337 A 337 (421)
T ss_pred H
Confidence 5
No 283
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.61 E-value=2.3e-14 Score=130.08 Aligned_cols=213 Identities=13% Similarity=0.194 Sum_probs=125.5
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~ 116 (324)
++.+++.++ .+++++|++++.++++|... | +++|.++|+++|+++|+||++.++.... .....|+
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi 262 (421)
T PRK09792 183 LDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL 262 (421)
T ss_pred HHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE
Confidence 577888774 25689999999999999764 5 8899999999999999999997663211 1124564
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
.+++|.+++ |.++ |++++++++++.+..... ..++.++.+...++...+.-+.. ....++..+..+++.+.|++
T Consensus 263 --~t~gK~l~~-G~pi-gav~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~ 336 (421)
T PRK09792 263 --MTMAKSLAG-GMPL-SGVVGNANIMDAPAPGGL-GGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNTLID 336 (421)
T ss_pred --EEeehhhcC-CCce-EEEEEcHHHHhccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 569999975 8997 999999998887754322 12233333332222222221211 12233333444444444443
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH-------HHHHHHHHHhhccccccccccccCCccceeccc
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 269 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~ 269 (324)
+..+ +|... .+.|.|.++++++++. .....+...+.. .|++. .+
T Consensus 337 l~~~--~p~v~-------------~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~---~Gv~i-----------~~ 387 (421)
T PRK09792 337 AKES--VPAIA-------------AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA---QGLLL-----------LT 387 (421)
T ss_pred HHHh--CCCcc-------------eecccceEEEEEecCCccCCcchHHHHHHHHHHHH---CCcEE-----------ee
Confidence 2111 11100 1226799999999632 234555555553 33311 11
Q ss_pred cccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 270 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+..++.|||.+. ...+++.++.+.++++.
T Consensus 388 ---------------~g~~~~~irl~P~-l~i~~~ei~~~~~~l~~ 417 (421)
T PRK09792 388 ---------------CGAYGNVIRFLYP-LTIPDAQFDAAMKILQD 417 (421)
T ss_pred ---------------cCCCCCEEEEeCC-CcCCHHHHHHHHHHHHH
Confidence 0122478999988 65555555555555544
No 284
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.60 E-value=8.2e-14 Score=121.81 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=122.0
Q ss_pred HHccCCCCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--CCceEEEEec
Q 020548 9 MQLCSSGGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFES 71 (324)
Q Consensus 9 ~~~~~~gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~ 71 (324)
+++.+ -|+|+....+|++..+.+---. |...|+ .+..++.+|++.+++++++ +++++|++++
T Consensus 130 Ra~Tg-R~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEP 208 (432)
T COG0001 130 RAYTG-RDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEP 208 (432)
T ss_pred HHhhC-CCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEecc
Confidence 34444 4899999999999887763110 111222 2344556799999999954 4899999999
Q ss_pred CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+....|.+.| ++.|+++|+++|+++|.||+..+|.... ....+|+.+ +.|.+|+ |.++ |.+.++++
T Consensus 209 v~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDltt--lGKiIGG-GlP~-ga~gGr~e 284 (432)
T COG0001 209 VAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTT--LGKIIGG-GLPI-GAFGGRAE 284 (432)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhh--hhhhhcC-Ccce-eeeccHHH
Confidence 7666788765 7899999999999999999987775432 223456665 9999977 9997 99999999
Q ss_pred HHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----HHHhCCCce
Q 020548 142 LVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR----RMKKLGLKV 201 (324)
Q Consensus 142 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~~~~~~ 201 (324)
+++.+.+... +.++++++..+..+....+..+...+...++..+..++|.+ .+++++..+
T Consensus 285 iM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~ 350 (432)
T COG0001 285 IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPL 350 (432)
T ss_pred HHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9998876543 12233333333333322333222211133444444444444 444555543
No 285
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.60 E-value=5.9e-14 Score=127.60 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=73.3
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
++.+++.+. .+++.+|++++.+..+|...+ +++|+++|++||+++|+||+|.++... ......|+
T Consensus 182 ~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi 261 (420)
T TIGR00700 182 LAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDL 261 (420)
T ss_pred HHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCE
Confidence 456666652 357899999999888998765 889999999999999999999776421 11224565
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+ +++|.++ +|+|+ |++++++++++.+...
T Consensus 262 ~--~lsK~l~-~G~pi-g~v~~~~~i~~~~~~~ 290 (420)
T TIGR00700 262 I--TTAKSLA-DGLPL-SGVTGRAEIMDAPAPG 290 (420)
T ss_pred E--Eeecccc-CCcce-EEEEecHHHHhhcCCC
Confidence 5 4999998 58997 9999999998887543
No 286
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.60 E-value=5.4e-13 Score=118.69 Aligned_cols=274 Identities=15% Similarity=0.074 Sum_probs=164.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcC---C
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQG---R 63 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~---~ 63 (324)
|++.+....++|||+| +++.|.... ..+. ..|.....++. .|++++++++... +
T Consensus 98 Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe-----~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~ 170 (450)
T TIGR02618 98 AENLLSQIAIKPGDYV--PGNMYFTTTRYHQE-----KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADK 170 (450)
T ss_pred HHHHHHHhCCCCcCEE--CCceeHHHHHHHHH-----hCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcc
Confidence 5566666678999977 667774443 3342 24554333311 1899999999322 4
Q ss_pred ceEEEEecCCCCc-cccc---ChHHHHHHHHhcCCEEEEcCCC-C--cCC-------C--Ccc-------CCCCcEEEeC
Q 020548 64 TKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-S--PLV-------L--SPA-------RLGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~-~--~~~-------~--~~~-------~~~~d~~~~S 120 (324)
+++|.+++++|.. |.+. +++++.++|+++|+.++.|.+. . ..+ . .+. -..+|.++.|
T Consensus 171 ~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S 250 (450)
T TIGR02618 171 IPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMS 250 (450)
T ss_pred cCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEe
Confidence 5678888888865 7884 5789999999999999999997 2 111 1 111 1158999999
Q ss_pred CccccccCCCeeEEEEE-cChhHHHHHHHhhhhh-hhccCCCCCHHHHHHHhcCccc-HH-HHHHHHHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAVC-GPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPH-LG-LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~L~~ 196 (324)
++|.++++- ||+++ .++++.++++.+..-. +....+.++......+..++.. ++ ...+....+.++|.+.|.+
T Consensus 251 ~~Kd~~~~~---GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~ 327 (450)
T TIGR02618 251 GKKDCLVNI---GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKA 327 (450)
T ss_pred eccCCCCCC---ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999987774 68886 7889999998875411 1111122222221112222222 22 2333446678999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
.|..+..|. +|..+.++.. ....+..+..+|-. ..|+-++..|..-..- -
T Consensus 328 ~Gvpv~~p~-------------------ggh~V~vda~~~lph~~~~~~p~~al~~~ly~--~~gir~~e~g~~~~~~-~ 385 (450)
T TIGR02618 328 AGVPIVEPV-------------------GGHAVFLDARRFLPHIPQDQFPAQSLAASIYV--ETGVRSMERGIVSAGR-N 385 (450)
T ss_pred CCCcccCCC-------------------CcceEEEEhHHhCCCCChhhChHHHHHHHHHH--HhCccEEeecceeccc-C
Confidence 988775554 4556666543 12245566666554 4566566666441110 1
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|.... ....+-..+|+.+-..--+..-++.+.+++..+-+
T Consensus 386 ~~~~~----------~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 386 NVTGE----------HHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYK 425 (450)
T ss_pred CCCCc----------ccCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 11100 00111378999998433455567778887777754
No 287
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.59 E-value=3.2e-13 Score=122.84 Aligned_cols=214 Identities=16% Similarity=0.121 Sum_probs=124.8
Q ss_pred CCEEEEcCCCchhHHHHHhhhc-----Ccccce---eEEEecC--------CCHHHHHHhhhc-----CCceEEEEecCC
Q 020548 15 GGHVVAARTLYGGTHALLTHFF-----PRACNI---TTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESIS 73 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~-----~~~~g~---~~~~~~~--------~d~~~l~~~l~~-----~~~~~v~~~~~~ 73 (324)
..+|+.....|++.....-... ...++. .+..++. .|++++++.+++ +++++|++++.+
T Consensus 129 r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~ 208 (425)
T PRK09264 129 RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQ 208 (425)
T ss_pred CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEeccc
Confidence 3678888888887543221110 000111 2233333 367788888742 357899999988
Q ss_pred CCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
...|... .+++|.++|++||+++|+||+++++.. .......|+++ ++|.+++.|.++ |+++.++++
T Consensus 209 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l~~~G~pi-gav~~~~~i 285 (425)
T PRK09264 209 GEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVT--LSKSISGYGLPM-ALVLIKPEL 285 (425)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEE--eccccCCCccce-EEEEEchhh
Confidence 8888754 489999999999999999999966531 12234567664 789998778997 999888775
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
..+..... ..++ ++++....+. ..+.....-....++..++.+++.+.|++...+ +|.... +
T Consensus 286 -~~~~~~~~-~~T~-~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~--~~~~~~------------~ 348 (425)
T PRK09264 286 -DVWKPGEH-NGTF-RGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAK--YPGLGA------------E 348 (425)
T ss_pred -hccCCCcc-CCCC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh--CCCcee------------c
Confidence 33322111 1122 2222222222 222111111134455566677777776654211 111000 1
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
..+.|.++++++++......+...+..
T Consensus 349 vrg~Gl~~~i~l~~~~~~~~l~~~~~~ 375 (425)
T PRK09264 349 VRGRGMMQGIDFGDGELAGKIAAEAFE 375 (425)
T ss_pred ceecccEEEEEecChHHHHHHHHHHHH
Confidence 125788999999866666677766663
No 288
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.59 E-value=3.1e-13 Score=123.57 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=124.1
Q ss_pred HHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCcc
Q 020548 55 VNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISK 123 (324)
Q Consensus 55 l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK 123 (324)
+++.+..+++++|++++.+...|...+ +++|.++|++||+++|+||++.++... -.....|+++ ++|
T Consensus 211 l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK 288 (443)
T PRK06058 211 IEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLIT--TAK 288 (443)
T ss_pred HHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEE--Ecc
Confidence 334442367999999988777777753 889999999999999999999776421 1223568877 689
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
.+++ |.++ |++++++++++.+..... ..++.++.+. .+++. ..++.+ +...++..++.+++.+.|++...+.
T Consensus 289 ~l~~-G~Pi-~av~~~~~i~~~~~~~~~-~~T~~gnpl~-~aaa~--a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~ 362 (443)
T PRK06058 289 GIAG-GLPL-SAVTGRAEIMDAPHPGGL-GGTYGGNPVA-CAAAL--AAIETIEEDDLVARARQIEALMTDRLRALAAED 362 (443)
T ss_pred cccC-CCcc-EEEEEcHHHHhhccCCCC-CCCCCCCHHH-HHHHH--HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9985 7997 999999998887754332 1223333333 22222 222222 1344555666777777777642111
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-------HHHHHHHHHHhhccccccccccccCCccceecccccccc
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 274 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 274 (324)
.... +..|.|.++.+++.+ ......+.+.+.. .|++ +.+.
T Consensus 363 ~~i~---------------~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~---~Gv~-----------~~~~---- 409 (443)
T PRK06058 363 DRIG---------------DVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA---AGVI-----------VLTC---- 409 (443)
T ss_pred CcEE---------------eeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH---CCeE-----------Eecc----
Confidence 1111 123678899998842 1234455555443 3331 1111
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 275 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 275 ~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+..++++|+... ...++++++.+.+++++
T Consensus 410 -----------~~~~~~lr~~Pp-l~~t~~~i~~~~~~l~~ 438 (443)
T PRK06058 410 -----------GTYGNVIRLLPP-LVIGDELLREGLDVLEA 438 (443)
T ss_pred -----------CCCCCEEEEECC-CccCHHHHHHHHHHHHH
Confidence 111368999877 55555555555555543
No 289
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.59 E-value=8.7e-14 Score=126.77 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=101.2
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~ 116 (324)
++.+++.+. .+++++|++++.+||+|.+.+ ++++.++|+++|+++|+||+|.++.... .....|+
T Consensus 189 ~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDi 268 (443)
T PRK08360 189 VEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDI 268 (443)
T ss_pred HHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCE
Confidence 344556663 257999999999999998864 7899999999999999999997663211 1224566
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+ +++|.++ +|+++ |++++++++++.+..... ..+..++.+...++...+..+.. +...++..++.+++.+.|++
T Consensus 269 i--tlsK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~ 342 (443)
T PRK08360 269 I--TLGKPLG-GGLPI-SATIGRAEIMDSLPPLAH-AFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLGNYTKKRLEE 342 (443)
T ss_pred E--Eeccccc-CCcee-EEEEEcHHHHhhhcCCCC-CCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH
Confidence 5 5899998 58997 999999999888864332 11222222222222222222211 12344555566666666655
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
...+...+. +..|.|.++.+++.
T Consensus 343 l~~~~~~v~---------------~vrg~Gl~~gie~~ 365 (443)
T PRK08360 343 MKKKHELIG---------------DVRGIGLMIGVDLV 365 (443)
T ss_pred HHHhCCCee---------------eeeccceEEEEEEe
Confidence 311110111 22367889999885
No 290
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.58 E-value=3.3e-13 Score=131.84 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=160.9
Q ss_pred cCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc--CCceEEEEecCCCCccccc
Q 020548 12 CSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 12 ~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~ 80 (324)
.++|| +|++++..|++....+. ..|++++.++.+ |+++|++++.. .++.+|++++|++..+...
T Consensus 583 ~~~G~~~r~~vlis~~aH~snp~sa~-----~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~ 657 (954)
T PRK05367 583 ESRGEGHRDVCLIPSSAHGTNPASAV-----MAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEE 657 (954)
T ss_pred hccCCCCCCEEEEEchhhhhhHHHHH-----HCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecC
Confidence 35665 59999999988887773 378888888764 89999998833 2578888898887644457
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcC--CCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPL--VLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~--~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
|+++|+++||++|+++++|.++ .++ ...|.++|+|++++|+||+|+.| |.- .|++..++.+...+.....+.
T Consensus 658 ~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg-~G~l~vr~~l~p~lpg~~v~~ 736 (954)
T PRK05367 658 TIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPG-VGPIGVKAHLAPFLPGHPVQI 736 (954)
T ss_pred CHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCc-eEEEeecccccccCCCCccCc
Confidence 8999999999999999999998 332 23566789999999999997533 222 478877655444443221000
Q ss_pred hhc---cCCCC-CHH-------HHHHH--hcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 154 LML---LGPTM-NPK-------VAFEL--SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 154 ~~~---~~~~~-~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
... .+... +.. .++.. ..+.+.+.+..++...+++++.+.|++. +++.+++-.+
T Consensus 737 ~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~-~~~~~~~~~~------------ 803 (954)
T PRK05367 737 AGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH-YPVLYTGANG------------ 803 (954)
T ss_pred CCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh-cCccccCCCC------------
Confidence 000 01111 100 01111 1233345555666678999999999874 3332221000
Q ss_pred cCCCcceEEEEE-eCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 221 KEYGFGGLLCLD-MET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 221 ~~~~~g~~~~~~-l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
..-...++.+. ++. ......+.++|.. +|+++. ... +.. ++.+|+++.
T Consensus 804 -~~~~e~i~~~~~~~~~~g~~~~di~krL~d---~G~~~~------------t~~------------~pv-~~~l~i~pt 854 (954)
T PRK05367 804 -RVAHECILDLRPLKESTGITVDDIAKRLID---YGFHAP------------TMS------------FPV-AGTLMVEPT 854 (954)
T ss_pred -CcccceEEEeecccccCCCCHHHHHHHHHH---CCCeEe------------ecC------------Ccc-CCEEEEEee
Confidence 00123355552 321 2245677777764 444221 000 011 478999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhh
Q 020548 298 YLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~~~ 318 (324)
..+..++++.|.+++..+.+
T Consensus 855 -E~~s~~elDr~~~al~~i~~ 874 (954)
T PRK05367 855 -ESESKAELDRFCDAMIAIRA 874 (954)
T ss_pred -ecCCHHHHHHHHHHHHHHHH
Confidence 88888999999999988764
No 291
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.58 E-value=3.4e-13 Score=122.83 Aligned_cols=250 Identities=13% Similarity=0.173 Sum_probs=148.8
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc----------ccceeEEEecCCC-----HHHHHHhhh--cCCceEEEEec-CCCCcc
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR----------ACNITTTFVDISD-----HEMVNSAIV--QGRTKVLYFES-ISNPTL 77 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~----------~~g~~~~~~~~~d-----~~~l~~~l~--~~~~~~v~~~~-~~nptG 77 (324)
.+|+.....|++........... ..+......+..| ++++++.+. .+++++|++++ +++..|
T Consensus 135 ~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG 214 (423)
T PRK05964 135 SRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGG 214 (423)
T ss_pred cEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCC
Confidence 58999999998855433211110 0122222222224 788888873 25688999998 688888
Q ss_pred cccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
...+ +++|.++|++||+++|+||++.++... .....+|+++ ++|+++++..++ |+++.++++.+.+
T Consensus 215 ~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~~p~-~av~~~~~i~~~~ 291 (423)
T PRK05964 215 MLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMC--LSKGLTGGYLPL-AATLCTAEIFEAF 291 (423)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeee--eehhhhcCcccc-eEEEEcHHHHHhh
Confidence 7753 889999999999999999999666321 1223467654 789998755786 8899999998887
Q ss_pred HHhhhhhhhccCC--CCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 147 MDLHQGALMLLGP--TMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
...........++ ...+..++.+...++.+ +...++..++.+++.+.|++... .|.+. +.
T Consensus 292 ~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~---~~~i~-------------~v 355 (423)
T PRK05964 292 YSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD---LPGVA-------------DV 355 (423)
T ss_pred hcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc---CCCeE-------------Ee
Confidence 5320000001111 12222222222222222 23445566677777777776521 12110 11
Q ss_pred CCcceEEEEEeCCHH---HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 223 YGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~---~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.+.|.++.+++.+.. ....+...+.. .|++. .+ ..+.+|++.. .
T Consensus 356 rg~Gl~~~i~l~~~~~~~~~~~l~~~l~~---~Gv~v-----------~~------------------~~~~lR~~p~-l 402 (423)
T PRK05964 356 RVLGAIGAVELDRPVLERDGPALRAFALE---RGVLL-----------RP------------------LGNTIYLMPP-Y 402 (423)
T ss_pred ecccEEEEEEeccCcchhHHHHHHHHHHH---CCeEE-----------Ee------------------cCCEEEEeCC-c
Confidence 246888899987432 35566666653 33311 11 1257999999 8
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 020548 300 GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~ 317 (324)
..++++++.+.+++++.-
T Consensus 403 ~~t~edId~~v~~l~~al 420 (423)
T PRK05964 403 IITAEELDRITDAIVEVA 420 (423)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 888888887777776653
No 292
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.58 E-value=1e-13 Score=126.55 Aligned_cols=176 Identities=11% Similarity=0.114 Sum_probs=107.8
Q ss_pred CHHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEE
Q 020548 51 DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVV 117 (324)
Q Consensus 51 d~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~ 117 (324)
+++++++.++ .+++++|++++.+...|.+.+ +++++++|++||+++|+||+|+++.... ...+....
T Consensus 191 ~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pD 270 (433)
T PRK08117 191 CLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPD 270 (433)
T ss_pred HHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCC
Confidence 4566666653 246899999999999999887 9999999999999999999997663211 11233233
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~ 195 (324)
+.+++|.+++ |.++ |++++++++++.+..... ..++.+ ++...+++. ..++.+ +...++..++.+++.+.|+
T Consensus 271 i~t~sK~lg~-G~pi-gav~~~~~i~~~~~~~~~-~~T~~~-np~~~aaa~--a~L~~l~~~~l~~~~~~~g~~l~~~L~ 344 (433)
T PRK08117 271 IMTIAKGIAS-GLPL-SAVVASKELMEQWPLGSH-GTTFGG-NPVACAAAL--ATLEVIKEEKLLDNANEMGAYALERLE 344 (433)
T ss_pred EeehhhhccC-CCcc-eeEEEcHHHHhhccCCCC-CCCCCc-CHHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4579999985 8997 999999988887743322 112222 222222222 222222 2344555666677777776
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC------HHHHHHHHHHhh
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMNYLQ 247 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~l~ 247 (324)
+...+. |... +..+.|.++.+++.+ ......+.+.+.
T Consensus 345 ~l~~~~--~~~~-------------~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~ 387 (433)
T PRK08117 345 VLKEKH--PVIG-------------DVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL 387 (433)
T ss_pred HHHhcC--Ccee-------------eeecCCcEEEEEEecCCCCcchHHHHHHHHHHH
Confidence 643211 1100 112577888888842 223445555554
No 293
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.58 E-value=3.2e-13 Score=129.97 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=124.9
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccC-hHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN-IPELS 86 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-~~~i~ 86 (324)
.++|+++...|+.....++ ..|++++.++.+ |+++|++++.+ +++++|++++|+| +|.+.+ +++|.
T Consensus 578 R~~vlip~saHgtnPasa~-----~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~ 651 (939)
T TIGR00461 578 RNICLIPVSAHGTNPASAA-----MAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHAC 651 (939)
T ss_pred CCEEEEEccccCcCHHHHH-----HCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHH
Confidence 3579999999977776663 368888888764 89999999932 5899999999999 798876 99999
Q ss_pred HHHHhcCCEEEEcCCC-C-c-CCCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhHHHHHHHhhhhh------
Q 020548 87 RLAHDKGVTVVVDNTF-S-P-LVLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDLHQGA------ 153 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~-~-~-~~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~~~~l~~~~~~~------ 153 (324)
++||++|..+++|.++ . . ....|.++|+|++++|.||+|++| |.-+ |++..++++...+-....+.
T Consensus 652 ~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~-G~i~vr~~L~~~lPg~~v~~t~d~~g 730 (939)
T TIGR00461 652 DIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGM-GPIGVKSHLIPFLPKHDVVSMITGIG 730 (939)
T ss_pred HHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCe-EEEEEhhhchhhcCCCcccccccCCC
Confidence 9999999999999998 3 2 234567889999999999977622 3334 99988866554432110000
Q ss_pred ------hhc---cCCCCCHHHHHHH--hcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 154 ------LML---LGPTMNPKVAFEL--SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 154 ------~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
... ++.......++.. +.+.+.+.+..+....+++++.+.|++ +.++.++
T Consensus 731 req~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~ 791 (939)
T TIGR00461 731 GSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFV 791 (939)
T ss_pred CccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCccccc
Confidence 000 1111111222222 223344666666678899999999987 3444444
No 294
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.57 E-value=2.9e-14 Score=126.28 Aligned_cols=184 Identities=17% Similarity=0.230 Sum_probs=119.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------CH-----HHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------DH-----EMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d~-----~~l~~~l~~-~~~~ 65 (324)
+|+..++.++++|||+|+++..+|-+....+ .+.|+.++++++. ++ +.+++++++ +..+
T Consensus 93 ~g~~a~i~a~~~~gd~VLv~RN~HkSv~~al-----il~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k 167 (417)
T PF01276_consen 93 SGNQAMIMALCRPGDKVLVDRNCHKSVYNAL-----ILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAK 167 (417)
T ss_dssp HHHHHHHHHHTTTTCEEEEETT--HHHHHHH-----HHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcHHHHHHHH-----HHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCcccc
Confidence 3678889999999999999999999998877 3468888887652 34 889888843 3334
Q ss_pred ---EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCC-----ccCCCCc-------EEEeCCccccccCC
Q 020548 66 ---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS-----PARLGAD-------VVVHSISKFISGGA 129 (324)
Q Consensus 66 ---~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~-----~~~~~~d-------~~~~S~sK~~~~~g 129 (324)
+|++++|+. .|.+.|+++|+++|++++++++||||| +.+.+. ...+|+| +++.|.||.+++
T Consensus 168 ~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-- 244 (417)
T PF01276_consen 168 APRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPA-- 244 (417)
T ss_dssp CESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--
T ss_pred CceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhcccc--
Confidence 499999854 799999999999999999999999999 444433 2345899 999999999754
Q ss_pred CeeEEEEEcChh---HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH-----HHHHHHHHHHHHHHHHHHHh
Q 020548 130 DIIAGAVCGPAN---LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL-----GLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 130 ~r~~G~i~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~L~~ 196 (324)
..-++++-.+.+ -.+.++.... ....++|+-...+-+-.....+ ....++..++++.+++.+++
T Consensus 245 ltQts~lh~~~~~~v~~~~~~~~l~---~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 245 LTQTSMLHVKGDRIVDHERVNEALS---MHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp -TT-EEEEEETCCCTTHHHHHHHHH---HHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEecCCCcccHHHHHHHHH---HHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333477743332 2355554433 1445555533222111111112 23455667777888888843
No 295
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.57 E-value=1.8e-13 Score=121.73 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=130.5
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
.+++++++++.+...|.+.+ ++++.++|++||+++|+||+|.++... -.....|+++ ++|.+++ |.
T Consensus 221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G~ 297 (447)
T COG0160 221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-GL 297 (447)
T ss_pred CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-CC
Confidence 36899999999999999964 789999999999999999999777532 2222578888 9999988 99
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
++ |.++.++++++ ..+... .. ++++++...+++.+....-+-+...++..+.-+++.+.|.++..+...-.
T Consensus 298 Pl-~avv~r~ei~~-~~~g~~-~~-Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig----- 368 (447)
T COG0160 298 PL-SAVVGRAEIMD-WPPGGH-GG-TFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG----- 368 (447)
T ss_pred ce-eEEeccHHhcc-cCCccc-CC-CCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee-----
Confidence 97 99999999888 443333 12 34444444444433222111124556667777777777776533211111
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
+..|.|.++.+++. +.+...++++++.. .|++ +..
T Consensus 369 ----------dVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~---~Gli----------l~~-------------- 411 (447)
T COG0160 369 ----------DVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFE---RGLL----------LLT-------------- 411 (447)
T ss_pred ----------cccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH---cCCE----------Eec--------------
Confidence 34478999999876 13556777777664 3331 111
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.|...+.+||..- ..-+++.++...++|+
T Consensus 412 --~G~~~nviRi~PP-L~is~e~~d~~l~il~ 440 (447)
T COG0160 412 --CGPHGNVLRILPP-LTISDEELDEGLDILE 440 (447)
T ss_pred --cCCCCcEEEEeCC-cccCHHHHHHHHHHHH
Confidence 2334688998887 5544444444444443
No 296
>PLN02880 tyrosine decarboxylase
Probab=99.57 E-value=6.5e-13 Score=122.23 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=124.9
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce-----eEEEecC-----CCHHHHHHhhhcC-----CceEEEEecCCCCcccccC
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI-----TTTFVDI-----SDHEMVNSAIVQG-----RTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~-----~~~~~~~-----~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~ 81 (324)
.|++++..|.+....+. ++|+ ..+.++. .|+++|++++++. .+-+|+.+.....+|.+.|
T Consensus 183 vv~~S~~aH~Sv~Kaa~-----~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp 257 (490)
T PLN02880 183 VVYASDQTHSALQKACQ-----IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP 257 (490)
T ss_pred EEEEcCCchHHHHHHHH-----HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc
Confidence 56678888999888873 3555 2334432 2899999988421 2456677778999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcC-CCCc------cC-CCCcEEEeCCccccccCCCeeEEEEEc-Chh-HHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPL-VLSP------AR-LGADVVVHSISKFISGGADIIAGAVCG-PAN-LVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~-~~~~------~~-~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~-~~~~l~~~~~ 151 (324)
+++|+++|+++|++++||.+|++. ...+ .. .++|.++.++|||++.|-.+ |+++. ++. +.+.+.....
T Consensus 258 l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~--g~llvr~~~~l~~~~~~~~~ 335 (490)
T PLN02880 258 LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDC--SLLWVKDRNALIQSLSTNPE 335 (490)
T ss_pred HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccE--EEEEEeCHHHHHHHHccCHH
Confidence 999999999999999999999554 3221 12 26899999999999776544 66644 333 2232221111
Q ss_pred hhhhc-----------------cCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCch
Q 020548 152 GALML-----------------LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPH 211 (324)
Q Consensus 152 ~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~ 211 (324)
+... .+-....+..+..++ +.+.+.+++++..+.++++.+.+++.+ +++..|.
T Consensus 336 -Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~------ 408 (490)
T PLN02880 336 -FLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR------ 408 (490)
T ss_pred -HhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC------
Confidence 0000 111122344443332 345577788888899999999998875 4655443
Q ss_pred hHHHHHHhccCCCcceEEEEEeC
Q 020548 212 HELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
..+++.|+++
T Consensus 409 -------------~~~iv~Fr~~ 418 (490)
T PLN02880 409 -------------IFSLVCFRLV 418 (490)
T ss_pred -------------ceEEEEEEEe
Confidence 2458888876
No 297
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.56 E-value=4.1e-13 Score=111.72 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=127.9
Q ss_pred HHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCC
Q 020548 31 LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV 106 (324)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~ 106 (324)
.++.+.|-.-| .+..++..|.++|+.++++++++++++++.+...|.+.| ++.+.++|.+|++++|.||+|.++.
T Consensus 176 s~~~fgp~~P~-~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~ 254 (427)
T KOG1402|consen 176 SWDGFGPFLPG-VVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLA 254 (427)
T ss_pred hhhccCCCCCC-cceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhccc
Confidence 34455554223 256677789999999998889999999999999999964 8899999999999999999997764
Q ss_pred C-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHH
Q 020548 107 L-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179 (324)
Q Consensus 107 ~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (324)
. +-.+...|+++ +.|.++|.-.++ ..+.++++++-.+++..++ .++.|+.+....+.+++. .-.-+..
T Consensus 255 RTGk~la~d~env~PDivi--lgKalSGG~~Pv-savl~~~~im~~~~pgeHg-sTyggNpLg~~vaiAale-vi~eekL 329 (427)
T KOG1402|consen 255 RTGKLLACDYENVRPDIVI--LGKALSGGVYPV-SAVLADDDIMLNIKPGEHG-STYGGNPLGCAVAIAALE-VIVEEKL 329 (427)
T ss_pred ccCcEEEeehhhcCCCeEE--EeccccCCeeee-EEEEecHHHHhccCCCccc-cccCCChHHHHHHHHHHH-HHHHHHH
Confidence 3 22334689999 899999977787 7778888888888777652 234444433333322222 1112244
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 180 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 180 ~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+|-...-..++.+|.+++.++ |...+ ...|+|.+..+.+.
T Consensus 330 ~era~~lG~~l~~~L~~l~~~~--p~~v~------------~VRGrGl~~ai~i~ 370 (427)
T KOG1402|consen 330 VERAAKLGEILRDQLNKLQKKF--PHVVK------------EVRGRGLLNAIVIN 370 (427)
T ss_pred HHHHHHHHHHHHHHHHhccccc--cchhh------------eeeccceEEEEEec
Confidence 5555666677777887775432 22111 33478888888887
No 298
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.55 E-value=1.4e-13 Score=125.35 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=96.8
Q ss_pred hHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhh--------c-Ccccce------eEEEecCCCHHHHHHhhhc--CC
Q 020548 3 AISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF--------F-PRACNI------TTTFVDISDHEMVNSAIVQ--GR 63 (324)
Q Consensus 3 ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~--------~-~~~~g~------~~~~~~~~d~~~l~~~l~~--~~ 63 (324)
|+..+++... ..+++|+..++.|++....+... . +...+. ....++..|++++++.+.. ++
T Consensus 118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 197 (426)
T PRK00062 118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDE 197 (426)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCc
Confidence 4555555432 23579999999999975322111 0 000011 1223344588999888832 47
Q ss_pred ceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeE
Q 020548 64 TKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+++|++++....+|.+.+ +++|.++|++||+++|+||+|.++.... .....|+ .+++|.+++ |+++
T Consensus 198 ~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~~-G~p~- 273 (426)
T PRK00062 198 IAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIGG-GLPV- 273 (426)
T ss_pred EEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhhC-CCcc-
Confidence 889999988777999987 8999999999999999999996653211 1123454 568999975 7886
Q ss_pred EEEEcChhHHHHHH
Q 020548 134 GAVCGPANLVNSMM 147 (324)
Q Consensus 134 G~i~~~~~~~~~l~ 147 (324)
|+++.++++++.+.
T Consensus 274 ga~~~~~~i~~~~~ 287 (426)
T PRK00062 274 GAFGGRREIMEQLA 287 (426)
T ss_pred eeeeEHHHHHHhhc
Confidence 88899988888885
No 299
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.55 E-value=2.1e-12 Score=119.14 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=121.7
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhc---CCceEEEEe--cCCCCcccccC
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQ---GRTKVLYFE--SISNPTLAVAN 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~---~~~~~v~~~--~~~nptG~~~~ 81 (324)
+..|+++.-.|.+....+. +.|+ +++.++.+ |+++|++++++ .+++.+.+. ..++.||.+.|
T Consensus 209 ~~~v~~S~~~H~S~~kaa~-----~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp 283 (522)
T TIGR03799 209 GLAILVSERGHYSLGKAAD-----VLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP 283 (522)
T ss_pred ceEEEECCCchHHHHHHHH-----HcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC
Confidence 4679999999999887763 2444 45555543 89999998831 455555444 56779999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC-CCc------cCC-CCcEEEeCCccccccCCCeeEEEE-EcChhHHHHHHHhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV-LSP------ARL-GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQG 152 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~-~~~------~~~-~~d~~~~S~sK~~~~~g~r~~G~i-~~~~~~~~~l~~~~~~ 152 (324)
+++|+++|+++|++++||.+|++.. ..+ ... ++|.++.|.|||+++|-+. |++ +.++++.+.+.....+
T Consensus 284 l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~--G~llvr~~~~~~~~~~~~~Y 361 (522)
T TIGR03799 284 LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGA--GMVLFKDPALMSAIEHHAEY 361 (522)
T ss_pred HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCccc--EEEEEeCHHHHHHhccCcch
Confidence 9999999999999999999995432 222 122 6899999999988776544 655 5556665554431110
Q ss_pred ----------hhhccCCCCC-HHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCC
Q 020548 153 ----------ALMLLGPTMN-PKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP 204 (324)
Q Consensus 153 ----------~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p 204 (324)
..+..++... ....+..++. ...++..+++..++++++.+.|++.+. ++..|
T Consensus 362 l~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~ 427 (522)
T TIGR03799 362 ILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE 427 (522)
T ss_pred hcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC
Confidence 0012222222 2223333332 234667788889999999999998854 55544
No 300
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.54 E-value=1.3e-12 Score=125.25 Aligned_cols=256 Identities=17% Similarity=0.191 Sum_probs=153.6
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhh--cCCceEEEEecCCCCcccccChHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~--~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
++|+++...|+.....+. ..|++++.++.+ |+++|++++. ++++++|.+++|++-.+...++++|.++
T Consensus 592 ~~vLIp~saHgtNpasa~-----~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~i 666 (954)
T PRK12566 592 DICLIPSSAHGTNPASAQ-----MAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEV 666 (954)
T ss_pred CEEEecccccccCHHHHH-----HCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHH
Confidence 578899988877665552 268898888774 8999999983 2678889999998877666779999999
Q ss_pred HHhcCCEEEEcCCC--CcCC-CCccCCCCcEEEeCCccccccCCCe---eEEEEEcChhHHHHHHHhh----hh-----h
Q 020548 89 AHDKGVTVVVDNTF--SPLV-LSPARLGADVVVHSISKFISGGADI---IAGAVCGPANLVNSMMDLH----QG-----A 153 (324)
Q Consensus 89 ~~~~~~~~ivD~~~--~~~~-~~~~~~~~d~~~~S~sK~~~~~g~r---~~G~i~~~~~~~~~l~~~~----~~-----~ 153 (324)
||++|+++++|.++ +... ..|.++|+|++++++||+|++|-.- -.|.+...+.+...+..+. .+ .
T Consensus 667 ah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~g 746 (954)
T PRK12566 667 VHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNG 746 (954)
T ss_pred HHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCC
Confidence 99999999999998 2333 3467889999999999999754222 0244444444444443221 00 0
Q ss_pred hhccCCCCC---HHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 154 LMLLGPTMN---PKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 154 ~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
++...+..+ ...++..+..+.. +.+..+....+++++.+.|.+ ++.+.+... .+. . -.-+.+
T Consensus 747 a~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~--~~~--~---------~hEfii 812 (954)
T PRK12566 747 AVSAAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGG-AFPVLYRGR--NER--V---------AHECIL 812 (954)
T ss_pred ceeecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCC--CCC--e---------eeEEEE
Confidence 011111122 1122222222221 222222236788899999977 333222110 000 0 001112
Q ss_pred EE-EeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 230 CL-DMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 230 ~~-~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
.+ .++. ......+.++|.. +|+++.. +.. . .++.+|++.. ..+..+++
T Consensus 813 ~~~~l~~~~g~~~~dvakRL~d---~Gihapt-------~~f-----------------P-v~~~LmIepT-E~eskeEI 863 (954)
T PRK12566 813 DLRPLKAQTGISEEDVAKRLMD---YGFHAPT-------MSF-----------------P-VPGTLMVEPT-ESESKAEL 863 (954)
T ss_pred EccccccccCCCHHHHHHHHHH---CCcEEeE-------Eee-----------------c-cCCEEEEEee-eeCCHHHH
Confidence 22 2321 1234557777663 4442210 001 1 1478999999 88999999
Q ss_pred HHHHHHHHhhhhc
Q 020548 307 SQFEKALSRMQDS 319 (324)
Q Consensus 307 ~~l~~~l~~~~~~ 319 (324)
+.|.++|..+.++
T Consensus 864 Drf~eAL~~I~~e 876 (954)
T PRK12566 864 DRFVEAMLSIRAE 876 (954)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 301
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.53 E-value=3e-12 Score=108.76 Aligned_cols=249 Identities=17% Similarity=0.149 Sum_probs=156.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH-----HHHhhhcCcccceeEEEecC----CCHHHHHHhhhc-----CCceEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH-----ALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQ-----GRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~-----~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~-----~~~~~v 67 (324)
+|...++.+.++||+.|++..-.|-... ..+. .+.++..++. .+++++++.+.. ..+.++
T Consensus 61 ~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~------~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~ 134 (342)
T COG2008 61 QANQLALAAHCQPGESVICHETAHIYTDECGAPEFFG------GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLA 134 (342)
T ss_pred HHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHc------CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceE
Confidence 3667788889999999999997774332 2221 2344444432 289999997732 235666
Q ss_pred EEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCC-C-c-CCCCc----cCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 68 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF-S-P-LVLSP----ARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 68 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~-~-~-~~~~~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++++.+|..|++++ +++|.++||++|+.+.+|.+. . . ....+ ...++|.+..++||..+.|+ +.+++
T Consensus 135 ~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~ 211 (342)
T COG2008 135 VLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVF 211 (342)
T ss_pred EEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEE
Confidence 66666668899987 557778899999999999984 1 1 11222 22389999999999987775 56668
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHH--HHHHhcCccc-HHHHHHHH-HHHHHHHHHHHHhC-CCceeCCCCCCCchh
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKV--AFELSERIPH-LGLRMKEH-CHRALIFARRMKKL-GLKVLYPGLEDHPHH 212 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~ 212 (324)
+++++.+.++.++. ..|..+++.. ++..+..+.. +..+.+++ .+.+++|.+.|+.. |.++..|.
T Consensus 212 gn~~~~~~a~~~rK----~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~------- 280 (342)
T COG2008 212 GNRDFAKRARRWRK----RAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPV------- 280 (342)
T ss_pred cCHHHHHHHHHHHH----HhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCC-------
Confidence 99999999998877 4455444332 1222212222 22222333 33489999999965 66776654
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH-HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC-C
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA-G 290 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 290 (324)
..+++-+.++.. ....++...+.. .|.. .... .
T Consensus 281 ------------~tN~vf~~l~~~~i~~l~~~~~~~~----------~~~~-----------------------~~~~~~ 315 (342)
T COG2008 281 ------------ETNMVFVRLPESAIEALRLAGALFY----------RGVL-----------------------IGAHGE 315 (342)
T ss_pred ------------cccEEEEECChHHHHHHHhhchhhe----------eeee-----------------------ccCCCc
Confidence 356888888732 112222111111 1100 0001 3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+||--+ ....++.++.+...++.+
T Consensus 316 ~vRfvts-~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 316 IVRFVTS-WATSEEDVDELVAAIKAL 340 (342)
T ss_pred eEEEEee-ccCCHHHHHHHHHHHHHh
Confidence 6999988 778888788777777654
No 302
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.52 E-value=1.2e-12 Score=118.72 Aligned_cols=162 Identities=12% Similarity=0.116 Sum_probs=100.1
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~ 118 (324)
++++++.+. .+++++|++++.+..+|... | +++|.++|++||+++|+||+|.++.... ...+....+
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi 262 (425)
T PRK07495 183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADL 262 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCE
Confidence 455676663 25689999998766688553 2 7899999999999999999997664221 112333445
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHh
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~ 196 (324)
.+++|.+++ |.++ |++++++++++.+..... .. ..++++...+++ +..++.+. ...++..+..+++.+.|++
T Consensus 263 ~tlsK~l~~-G~pi-gav~~~~~i~~~~~~~~~-~~-T~~~~pl~~aaa--~a~l~~l~~~~l~~~~~~~g~~l~~~L~~ 336 (425)
T PRK07495 263 TTMAKGLAG-GFPL-AAVTGRAEIMDAPGPGGL-GG-TYGGNPLGIAAA--HAVLDVIEEEDLCERANQLGNRLKQRLAS 336 (425)
T ss_pred EeehhhhcC-Cccc-eEEEEcHHHHhccCCCCc-CC-CCCCCHHHHHHH--HHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 669999975 7997 999999998887754322 11 222332222222 22222222 3344556666667776665
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.-.+. |... +..|.|.++++++.
T Consensus 337 l~~~~--~~i~-------------~vrG~Gl~~~iel~ 359 (425)
T PRK07495 337 LRETV--PEIA-------------DIRGPGFMNAVEFN 359 (425)
T ss_pred HHhhC--CCee-------------eeecCceEEEEEEe
Confidence 42211 2100 22367899999985
No 303
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.52 E-value=1.2e-11 Score=110.41 Aligned_cols=274 Identities=14% Similarity=0.033 Sum_probs=161.0
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEec-----------C----CCHHHHHHhhhc---CC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVD-----------I----SDHEMVNSAIVQ---GR 63 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~-----------~----~d~~~l~~~l~~---~~ 63 (324)
|+..++...++|||+| +..+|.... ..+. . .|....-++ . .|++++++++.+ .+
T Consensus 105 Al~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~----~-~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~ 177 (460)
T PRK13237 105 AENLLSRIAIKPGQYV--PGNMYFTTTRYHQE----L-NGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAEN 177 (460)
T ss_pred HHHHHHHhCCCCcCEE--CCccchHhhHHHHH----h-CCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCc
Confidence 4555555568999965 555444333 3242 1 444322221 1 289999999832 24
Q ss_pred ceEEEEecCCCCc-cccc---ChHHHHHHHHhcCCEEEEcCCC-Cc---CC------C--Ccc-------CCCCcEEEeC
Q 020548 64 TKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-SP---LV------L--SPA-------RLGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~-~~---~~------~--~~~-------~~~~d~~~~S 120 (324)
+++|.++.++|.. |+.. +++++.++|+++|+.+|.|.+. .+ |. + .+. -...|.+++|
T Consensus 178 ~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S 257 (460)
T PRK13237 178 IAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMS 257 (460)
T ss_pred cCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEe
Confidence 5567777788887 6765 6799999999999999999997 33 11 1 111 1147999999
Q ss_pred CccccccCCCeeEEEE-EcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCc-ccHH-HHHHHHHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAV-CGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERI-PHLG-LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~L~~ 196 (324)
++|.++.+. ||++ +.++++.++++....- -+...-+.++......+..++ +.++ .+.+....+.++|.+.|.+
T Consensus 258 ~~K~~~~~~---GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~ 334 (460)
T PRK13237 258 GKKDCLVNI---GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLA 334 (460)
T ss_pred CCCCCCCCC---ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 999987764 5777 5577899998877421 011111223222222222222 2222 5666667889999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
.|..+..|. +|--+.++.. ....+..+..+|-. ..|+-++..|..-..- -
T Consensus 335 ~Gvpv~~p~-------------------ggH~v~vda~~~lph~~~~~~p~~al~~~ly~--~~GiR~~e~g~~~~~~-~ 392 (460)
T PRK13237 335 AGVPIVEPV-------------------GGHAVFLDARRFLPHLPQDQFPAQALAAELYI--ESGVRSMERGIVSAGR-D 392 (460)
T ss_pred CCCceecCC-------------------CceEEEEEhHHhCCCCCcccChHHHHHHHHHH--HhCcCeEeecceeccc-C
Confidence 999887775 3333444321 12245566666554 4555555555441110 1
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|.... ....+-..+|+.+-..--+.+-++.+.+++..+-+
T Consensus 393 ~~~~~----------~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 393 PKTGE----------NHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred CCCCc----------cCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 11100 00111378999998433455567788888877754
No 304
>PLN02590 probable tyrosine decarboxylase
Probab=99.51 E-value=6.7e-12 Score=115.79 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=120.2
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce---eEEEecC-------CCHHHHHHhhhcC-----CceEEEEecCCCCcccccC
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDI-------SDHEMVNSAIVQG-----RTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~-------~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~ 81 (324)
.|++++..|.+....+. ++|+ .++.++. .|+++|++++.+. .+-+|+.+.....+|.+.|
T Consensus 231 vvy~S~~aH~Sv~KAa~-----ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 231 VVYGSDQTHSSFRKACL-----IGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred EEEecCCchHHHHHHHH-----HcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 56677888999888773 3444 2444433 2899999998321 2456777778999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC-CCcc------CC-CCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHH---h
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV-LSPA------RL-GADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMD---L 149 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~------~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~---~ 149 (324)
+++|+++|++||+++.||.+|+++. ..+. .+ .+|-+..++|||+..|-.+ +.+++.++. +.+.+.. +
T Consensus 306 l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~c-g~llvr~~~~l~~a~~~~~~Y 384 (539)
T PLN02590 306 LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC-SPLWVKDRYSLIDALKTNPEY 384 (539)
T ss_pred HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCE-EEEEecCHHHHHHHhhcCHHH
Confidence 9999999999999999999996643 2221 11 4799999999999886555 244455543 3333221 1
Q ss_pred hhh-------------hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCC
Q 020548 150 HQG-------------ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP 204 (324)
Q Consensus 150 ~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p 204 (324)
... ++...+-....+..|..++ +.+.+.+++++..+.++++.+.+++.+. ++..|
T Consensus 385 L~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~ 455 (539)
T PLN02590 385 LEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT 455 (539)
T ss_pred hCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 100 0001111123444454443 3355778899999999999999998864 65544
No 305
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.50 E-value=1.7e-12 Score=118.49 Aligned_cols=150 Identities=15% Similarity=0.241 Sum_probs=96.4
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|+++++++..|...+ +++|.++|++||+++|+||++.++... -.....|++ +++|.+++ |.
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~-G~ 282 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAG-GM 282 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccC-Cc
Confidence 57899999999998898865 899999999999999999999666321 112346766 49999976 68
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |++++++++++.+..... .. ..++. +..++..+..++.+ +...++..++.+++.+.|++...+.....
T Consensus 283 p~-gav~~~~~i~~~~~~~~~-~~-T~~~~--pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~--- 354 (445)
T PRK08593 283 PM-SAIVGRKEIMESLEAPAH-LF-TTGAN--PVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVG--- 354 (445)
T ss_pred cc-EEEEEcHHHHhhhccCCC-CC-CCCCC--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEE---
Confidence 86 999999999888753222 11 22222 23333222223222 23445556666777777765421111111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|.++.+++.
T Consensus 355 ------------~vrG~Gl~~gi~l~ 368 (445)
T PRK08593 355 ------------DVRGYGLSIGIDIV 368 (445)
T ss_pred ------------EEeccceEEEEEEe
Confidence 22367888888874
No 306
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.49 E-value=2.1e-12 Score=106.17 Aligned_cols=250 Identities=16% Similarity=0.199 Sum_probs=160.2
Q ss_pred HHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-------CceEEEEec
Q 020548 5 SSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-------RTKVLYFES 71 (324)
Q Consensus 5 ~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-------~~~~v~~~~ 71 (324)
..+++.-| ++|.+|++.+..|--..+.- -.....|+.+..+... +++++++++..+ .|++|++++
T Consensus 85 llaIm~Hc~~rg~eii~gd~~HI~~~E~g--g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclEN 162 (384)
T KOG1368|consen 85 LLAIMVHCHQRGSEIIVGDRAHIHRYEQG--GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLEN 162 (384)
T ss_pred HHHHHHHhcCCCceEEeccchheeehhcc--ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeec
Confidence 34555556 48999999987663222111 1112245555554432 899999998522 489999999
Q ss_pred CCCCcc-cccChH---HHHHHHHhcCCEEEEcCCC---CcC--CCCccCC--CCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTL-AVANIP---ELSRLAHDKGVTVVVDNTF---SPL--VLSPARL--GADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG-~~~~~~---~i~~l~~~~~~~~ivD~~~---~~~--~~~~~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
-+|.+| .+.|++ ++.+||+++|+.+.+|.+. +.. ..+..+. ..|-+.--+||.+|.|- |.++++++
T Consensus 163 T~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV---GSViVG~k 239 (384)
T KOG1368|consen 163 THNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV---GSVIVGSK 239 (384)
T ss_pred cccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc---ccEEEccH
Confidence 888777 887755 6677899999999999984 111 1111111 35666666999998874 56779999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHH--HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPK--VAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+..+. ..|+.+.|. .+++++-.++.-...++.-.+++..+.+.+++.+ +++..|..
T Consensus 240 ~FI~kA~~~RK----alGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~----------- 304 (384)
T KOG1368|consen 240 DFIDKARHFRK----ALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAV----------- 304 (384)
T ss_pred HHHHHHHHHHH----HhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchh-----------
Confidence 99999887776 334443332 2333333333322255556788889999999876 46666642
Q ss_pred HhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
..+++.+.+. +...++.+++.+.. .|++. . +.....+|+++
T Consensus 305 -------etNiv~~~l~q~~~~~~~l~~~~~k---~gi~l-----------m-----------------~~~s~r~Rivl 346 (384)
T KOG1368|consen 305 -------ETNIVNMVLCQARLTAEELCKFLEK---NGILL-----------M-----------------GGASRRIRIVL 346 (384)
T ss_pred -------hcceeeeecccccCCHHHHHHHHHH---CCeEE-----------e-----------------eccccceEEEE
Confidence 3457777765 55567778888775 33311 1 22234599999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 020548 297 GYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l 313 (324)
+ ..-+++.++.+..++
T Consensus 347 h-~Qvt~~~ve~~~~~~ 362 (384)
T KOG1368|consen 347 H-HQVTDEDVEYVKSVL 362 (384)
T ss_pred E-EecCHHHHHHHHHHH
Confidence 9 766666777777777
No 307
>PLN02263 serine decarboxylase
Probab=99.49 E-value=1.2e-11 Score=111.38 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=127.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCC--ceEEEEecCCCCcccccChHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~--~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+...++++...|.+....+ +++|++++.++.+ |+++|++++.++. +-+|+.+..+.++|.+.|+++|.
T Consensus 177 ~~~vvy~S~~aH~Sv~KAa-----~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa 251 (470)
T PLN02263 177 PDGILYASRESHYSVFKAA-----RMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVI 251 (470)
T ss_pred CCcEEEEcCCccHHHHHHH-----HhcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHH
Confidence 3447889999999999888 4578888777764 8999999884332 55677788999999999999999
Q ss_pred HHHHhcCC-----EEEEcCCCCcCCC----C--ccC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 87 RLAHDKGV-----TVVVDNTFSPLVL----S--PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 87 ~l~~~~~~-----~~ivD~~~~~~~~----~--~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
++|+++|+ ++.||.+|+++.. . ..+ ..+|-+..+.||+++.|-.+ |++..+.+..+.+.....+
T Consensus 252 ~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~c--gvll~R~~~~~~~~~~~~Yl 329 (470)
T PLN02263 252 KTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPC--GVQITRMEHINVLSSNVEYL 329 (470)
T ss_pred HHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCE--EEEEEehhhHhhhccChHhh
Confidence 99999997 9999999966532 1 111 14889999999999876544 6665555444333221110
Q ss_pred ---hhhccCCCC--CHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 020548 153 ---ALMLLGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLK 200 (324)
Q Consensus 153 ---~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 200 (324)
-.+..++-. ..+.+|..++ +.+.+.+++++..++++++.+.|++.++.
T Consensus 330 ~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~ 384 (470)
T PLN02263 330 ASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGIS 384 (470)
T ss_pred CCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 001222222 2345555444 34557788889999999999999999874
No 308
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.49 E-value=1.9e-12 Score=118.73 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCC--CcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~--~d~~~~S~sK~~~~~g~ 130 (324)
+++.+|++++.+...|.+.+ +++|+++|+++|+++|+||+|.++.... ..++ .| +.|++|.++ +|+
T Consensus 218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pD--i~t~sK~l~-~G~ 294 (451)
T PRK06918 218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPD--LITVSKSLG-AGV 294 (451)
T ss_pred CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCC--EEeeehhhc-CCC
Confidence 57899999988777787643 7899999999999999999997764221 1123 56 447999998 589
Q ss_pred eeEEEEEcChhHHHHHHHh
Q 020548 131 IIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~ 149 (324)
|+ ||+++++++++.+...
T Consensus 295 pi-g~v~~~~~i~~~~~~~ 312 (451)
T PRK06918 295 PI-SGVIGRKEIMDESAPG 312 (451)
T ss_pred cc-EEEEEcHHHHhccCCC
Confidence 97 9999999988877543
No 309
>PRK06541 hypothetical protein; Provisional
Probab=99.47 E-value=4.9e-12 Score=115.85 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=105.6
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+.+++.+. .+++++|++++.+++.|.+.+ +++|.++|+++|+++|+||++.++.. .-.....|+++
T Consensus 208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt 287 (460)
T PRK06541 208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT 287 (460)
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE
Confidence 56777773 246889999999999999987 99999999999999999999966631 11223478776
Q ss_pred eCCccccccCCC-eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 119 ~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~ 195 (324)
++|.+++ |+ ++ |.++.++++++.+................+..++.++..++.+ +...++..++.+++.+.|+
T Consensus 288 --~gK~l~~-G~~pi-gav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~ 363 (460)
T PRK06541 288 --CAKGITS-GYSPL-GAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLE 363 (460)
T ss_pred --ecccccC-Cccce-eEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999985 65 87 8888888888877543210000111122233333333333332 2345667788888888888
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+... +|... ...|.|.++.+++.
T Consensus 364 ~l~~---~~~v~-------------~vrg~Gl~~~ie~~ 386 (460)
T PRK06541 364 KLLD---LPIVG-------------DVRGDGYFYGIELV 386 (460)
T ss_pred Hhhc---CCCeE-------------EEEecceEEEEEEe
Confidence 7531 11100 12257889999984
No 310
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.47 E-value=7.6e-12 Score=104.23 Aligned_cols=250 Identities=16% Similarity=0.145 Sum_probs=150.9
Q ss_pred CCCCEEEEcCC-CchhHHHHHhhhcCcccce--eEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 13 SSGGHVVAART-LYGGTHALLTHFFPRACNI--TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 13 ~~gd~vl~~~p-~y~~~~~~~~~~~~~~~g~--~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
++|++||+++- .|+.-..+.+..... .++ ++.- ...++++++++ ++.+.+|++++++.-||+..++.+|-.++
T Consensus 117 ~~~r~vIv~E~~~fpTdly~a~g~~~~-~~~~~~~~~--~~~P~~~~~~~-~dd~AvV~L~~V~y~TGql~dm~aiT~~A 192 (407)
T COG3844 117 QEGRRVIVSEGDNFPTDLYIAEGLADL-LGIGYDLEG--VIAPRALEEAI-TDDVAVVLLSHVNYKTGQLLDMRAITALA 192 (407)
T ss_pred CCCceEEeecCCCCCcchhhhcchhhh-hccccccee--eeChHHHHHhh-ccceEEEEeccccccccceeeHHHHHHHH
Confidence 45888888873 343333333222221 332 2222 23678999999 89999999999999999999999999999
Q ss_pred HhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh---------------
Q 020548 90 HDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--------------- 152 (324)
Q Consensus 90 ~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~--------------- 152 (324)
|++|++++.|=++ .+ +..+.-..|+|+-+++.+|++.+..+..+|..+.++ ..+...+...+
T Consensus 193 H~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~ 271 (407)
T COG3844 193 HQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYA 271 (407)
T ss_pred HhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccc-cccccccccccccCCCCcchhhhccC
Confidence 9999999999998 33 334444559999999999998775444434444443 33222111110
Q ss_pred ----hhhccCCCCCHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHhCC----CceeCCCCCCCchhHHHHHHh
Q 020548 153 ----ALMLLGPTMNPKVAFELSERI-----PHLGLRMKEHCHRALIFARRMKKLG----LKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~p~~~~~~~~~~~~~~~ 219 (324)
...+-.+++.......+...+ -.+.+.+++.....+++++-++.+. ..+..|.-.
T Consensus 272 p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~------------ 339 (407)
T COG3844 272 PGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH------------ 339 (407)
T ss_pred cCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh------------
Confidence 111111222222222111111 1255566666788888888888763 245445411
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
..+|+-+++..+. ..+++.+|.. .|+++ . -..++.+||.+. .
T Consensus 340 ---~~rGsqvS~~hp~---~~~V~qaLi~---rGVig----D------------------------~R~P~vlRfgft-P 381 (407)
T COG3844 340 ---EERGSQVSLYHPH---GYQVMQALID---RGVIG----D------------------------FREPDVLRFGFT-P 381 (407)
T ss_pred ---hhccceeeEecCc---HHHHHHHHHH---cCccc----c------------------------ccCCCeeeecCc-c
Confidence 1268889999974 4455555553 33322 0 113578998875 3
Q ss_pred -----CCHHHHHHHHHHHHHhhh
Q 020548 300 -----GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 -----~~~~~~~~~l~~~l~~~~ 317 (324)
.+.=..++.|+++|+...
T Consensus 382 lY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 382 LYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ceechhHHHHHHHHHHHHHHhhc
Confidence 345556677777776553
No 311
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.47 E-value=9.8e-12 Score=113.60 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=94.4
Q ss_pred CCceEEEEecCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|+++++++..|... | +++++++|++||+++|.||+|.+|... -.....|+++ ++|.+++ |+
T Consensus 205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G~ 281 (442)
T TIGR00709 205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-GL 281 (442)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-Cc
Confidence 4689999999877777764 3 789999999999999999999777421 1223578888 8999988 79
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |+++.+++ ++.+..... .. ..++++...+++. ..++.++ ...++..++.+++.+.|+++..+...+.
T Consensus 282 Pi-gav~~~~~-~~~~~~~~~-~~-T~~gnpla~aaa~--a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~--- 352 (442)
T TIGR00709 282 PL-AVLLIAPE-FDAWQPAGH-TG-TFRGNQLAMVTGT--EALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG--- 352 (442)
T ss_pred cc-EEEEEchH-HhccCCCcC-CC-CCCcCHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCee---
Confidence 97 88888777 444322111 11 2223333332222 2222221 3445566777777777776421111111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|.++.+++.
T Consensus 353 ------------~vrG~Gl~~~ie~~ 366 (442)
T TIGR00709 353 ------------NVRGRGLMQGIMIV 366 (442)
T ss_pred ------------eeeccceEEEEEEc
Confidence 23378999999985
No 312
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.45 E-value=3.2e-12 Score=115.94 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=132.7
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceE--EEEecCCCCcccccChHHHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKV--LYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~--v~~~~~~nptG~~~~~~~i~~l 88 (324)
+|+++...|.+....+. .+|++.+.++.. |++++++++ ++++.. |+.+..+.++|.+.|+++|.++
T Consensus 159 ~ii~s~~aH~s~~Kaa~-----~lG~~~~~v~~~~~~~~id~~~l~~~i-~~~t~~g~vV~~aGtT~~G~iDdi~~ia~i 232 (460)
T COG0076 159 NIVCSETAHFSFEKAAR-----YLGLGLRRVPTVPTDYRIDVDALEEAI-DENTIGGVVVGTAGTTDTGSIDDIEELADI 232 (460)
T ss_pred eEEecCcchhHHHHHHH-----HhCCCceeEEeccCccccCHHHHHHHH-HhhccCceEEEEecCCCCCccCCHHHHHHH
Confidence 69999999999988883 356655554432 899999999 666655 7778899999999999999999
Q ss_pred HHhcCCEEEEcCCCCcCCC---Ccc-----CC-CCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHHhhhhh-----
Q 020548 89 AHDKGVTVVVDNTFSPLVL---SPA-----RL-GADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGA----- 153 (324)
Q Consensus 89 ~~~~~~~~ivD~~~~~~~~---~~~-----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~~~~~~----- 153 (324)
|++++++++||++++++.. ++. .. ++|-+..|+||++..|-.+ |.+++.+++ +.+.+.-...+.
T Consensus 233 a~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~-G~il~rd~e~l~~~~~~~~~yl~~~~~ 311 (460)
T COG0076 233 AEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGC-GVVLFRDEEALRRILIFADYYLPGGGI 311 (460)
T ss_pred HHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCc-eEEEEECHHHhhhhhhcccccCCCCCc
Confidence 9999999999999977642 111 11 6899999999998765544 344466663 444443222210
Q ss_pred --hhccCCCCC--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 154 --LMLLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 154 --~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.+..++-+. ....+..+. +.+.+....++..++++++.+.|++.+ +++..+. ..
T Consensus 312 ~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-------------------~l 372 (460)
T COG0076 312 PNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-------------------EL 372 (460)
T ss_pred CceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-------------------cc
Confidence 011111122 122233332 345577788888999999999999997 5554322 35
Q ss_pred eEEEEEeCC
Q 020548 227 GLLCLDMET 235 (324)
Q Consensus 227 ~~~~~~l~~ 235 (324)
++++|++++
T Consensus 373 ~~V~fr~~~ 381 (460)
T COG0076 373 PIVAFRLKD 381 (460)
T ss_pred ceEEEEcCC
Confidence 589999864
No 313
>PRK15029 arginine decarboxylase; Provisional
Probab=99.45 E-value=3.6e-12 Score=121.03 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=124.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------C-----HHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------D-----HEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d-----~~~l~~~l~~-~~~~ 65 (324)
+|+.+++++.+++||+|++..++|-+....+ .+.|..++++.+. + ++.++++++. +.++
T Consensus 232 ~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al-----~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k 306 (755)
T PRK15029 232 GSNRTIMQACMTDNDVVVVDRNCHKSIEQGL-----ILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTK 306 (755)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHH-----HHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhh
Confidence 3677888999999999999999999998877 3478888887642 3 8888888832 2334
Q ss_pred --------EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCC-------Ccc-----C-CCCc-EEEeCCc
Q 020548 66 --------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-------SPA-----R-LGAD-VVVHSIS 122 (324)
Q Consensus 66 --------~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~-------~~~-----~-~~~d-~~~~S~s 122 (324)
++++++|+. .|.+.++++|+++|++++++++||||| +++.+ .++ . .|+| +++.|.|
T Consensus 307 ~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStH 385 (755)
T PRK15029 307 DKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTH 385 (755)
T ss_pred hccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchh
Confidence 899999854 799999999999999999999999999 43422 222 2 5788 9999999
Q ss_pred cccccCCCeeEEEEEcChh---H-HHHHHHhhhhhhhccCCCCCHHHHHHH--h-cCcc--cHHHHHHHHHHHHHHHHHH
Q 020548 123 KFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMNPKVAFEL--S-ERIP--HLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~~~~~~~l~~~ 193 (324)
|.+++ ...++++-.+.+ + .+.++.... ...+++|+-...+-+ . ..+. .-.....+..+.+..+++.
T Consensus 386 KtL~a--lTQaS~LHv~~~~~~id~~r~~~~l~---~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~ 460 (755)
T PRK15029 386 KLLNA--LSQASYIHVREGRGAINFSRFNQAYM---MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA 460 (755)
T ss_pred hcccc--hhhhhhheeCCCccccCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99854 444456633221 1 234443332 234445443222111 1 1111 1123445566777777777
Q ss_pred HHhCC
Q 020548 194 MKKLG 198 (324)
Q Consensus 194 L~~~~ 198 (324)
+++.+
T Consensus 461 l~~~~ 465 (755)
T PRK15029 461 MARLY 465 (755)
T ss_pred HHhcc
Confidence 76653
No 314
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.44 E-value=3.8e-12 Score=117.49 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=102.5
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.+. .+++++|++++.+...|.+.+ +++|+++|++||+++|+||++.+|.. .-....+|+++
T Consensus 247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt 326 (504)
T PLN02760 247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS 326 (504)
T ss_pred HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE
Confidence 45666652 246889999999888898877 99999999999999999999977632 11223577766
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++|.+++...++ |.+++++++++.+..... ......++++. .++.++..++.++ ...++..++.+++.
T Consensus 327 --lgK~lggG~~Pi-gAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl--~~Aaala~Le~i~~~~l~~~~~~~g~~l~ 401 (504)
T PLN02760 327 --LAKALSSAYMPI-GAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPV--SCAVALEALKIYKERNIPEHVNKIAPRFQ 401 (504)
T ss_pred --ecccccCCcccc-ceEeecHHHHhhhhcccccccCcccCCCCCCCHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899997733476 778888898887753210 00112223333 3333333333322 34555667777777
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|++.. + .|... +..|.|.++.+++.
T Consensus 402 ~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~~ 428 (504)
T PLN02760 402 DGIKAFS-G--SPIIG-------------EIRGTGLILGTEFV 428 (504)
T ss_pred HHHHHHh-c--CCCee-------------eEEeCceEEEEEEe
Confidence 7777641 1 11100 23368899999885
No 315
>PRK07678 aminotransferase; Validated
Probab=99.44 E-value=8.2e-12 Score=114.24 Aligned_cols=217 Identities=9% Similarity=0.096 Sum_probs=126.1
Q ss_pred HHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEe
Q 020548 54 MVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVH 119 (324)
Q Consensus 54 ~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~ 119 (324)
.+++.++ .+++++|++++.+...|.+.+ ++++.++|++||+++|+||++.+|... -....+|+++
T Consensus 201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt- 279 (451)
T PRK07678 201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT- 279 (451)
T ss_pred HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE-
Confidence 3555563 257999999998887888864 889999999999999999999776321 1233578887
Q ss_pred CCccccccCCCeeEEEEEcChhHHHHHHHhhh----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 120 S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++|.+++...++ |.+++++++++.+..... ......++++... +.++..++.+. ...++..+..+++.+.
T Consensus 280 -~gK~lggG~~Pi-~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~--aaa~a~l~~l~~~~~~~~~~~~g~~l~~~ 355 (451)
T PRK07678 280 -MAKGITSAYLPL-SATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAAC--ALALKNLEIMENENLIERSAQLGELLLEQ 355 (451)
T ss_pred -eecccccCCcce-eEEEEcHHHHHHHhccCcccccccCCCCCcCHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 899998843687 888889898887753210 0111222333333 33222233322 2344455555666666
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC---------HHHHHHHHHHhhccccccccccccCCccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---------EEKANRLMNYLQNYAQFGFMAVSLGYYET 264 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~ 264 (324)
|++.-.+...+. +..|.|.++.+++.. ......+...+.. .|++.
T Consensus 356 l~~~~~~~~~v~---------------~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~---~Gv~~-------- 409 (451)
T PRK07678 356 LKEELGEHPLVG---------------DIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKE---KGLII-------- 409 (451)
T ss_pred HHHHHhcCCCEE---------------EEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHH---CCcEE--------
Confidence 654211110111 223678899998841 1234556655553 33311
Q ss_pred eeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 265 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+.... .....+.+|++.. ...++++++.+.++++..
T Consensus 410 ---~~~g~~-----------v~~~~~~lrl~Pp-l~it~~eid~~~~~l~~~ 446 (451)
T PRK07678 410 ---GKNGDT-----------VAGYNNVLTLSPP-LVISSEEIAFIVGTLKTA 446 (451)
T ss_pred ---eecCcc-----------ccCCCCEEEEECC-CcCCHHHHHHHHHHHHHH
Confidence 110000 0011368999988 655666666555555443
No 316
>PRK05965 hypothetical protein; Provisional
Probab=99.43 E-value=5.8e-12 Score=115.41 Aligned_cols=216 Identities=14% Similarity=0.168 Sum_probs=132.3
Q ss_pred HHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.+.. +++.+|++++.+...|.+.+ ++++.++|++||+++|+||++.+|.. .-....+|+++
T Consensus 202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 281 (459)
T PRK05965 202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT 281 (459)
T ss_pred HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE
Confidence 567777732 57899999999888888753 78999999999999999999977732 11233578888
Q ss_pred eCCccccccCC-CeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 119 HSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 119 ~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++|.+++ | .++ |.++.++++++.+..... ..+...++.+.. ++..+..++.++ ...++..+..+++
T Consensus 282 --~gKgl~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~--~Aaa~a~L~~l~~~~l~~~~~~~g~~l 355 (459)
T PRK05965 282 --VAKGLTS-GYVPM-GAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVS--AAVGLEVLRLYHEGGLLANGQKAGPRF 355 (459)
T ss_pred --echhhcc-CCcce-eEEEEcHHHHHHHhccccccccccccCCCCCCHHH--HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8999987 6 487 888889898887753210 011122333333 333332333332 3445556677777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-H----------HHHHHHHHHhhcccccccccccc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-E----------EKANRLMNYLQNYAQFGFMAVSL 259 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~----------~~~~~~~~~l~~~~~~g~~~~~~ 259 (324)
.+.|++.. + +|... +..|.|.++.+++.. . .....+...+.. .|++.
T Consensus 356 ~~~l~~l~-~--~~~v~-------------~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~---~Gll~--- 413 (459)
T PRK05965 356 AAGLDALR-A--HPLVG-------------DVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYA---NGLVF--- 413 (459)
T ss_pred HHHHHhhc-c--CCCEE-------------EEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHh---CCeEE---
Confidence 77777642 1 12110 233689999998841 1 123445444442 33311
Q ss_pred CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc---CCCHHHHHHHHHHHHHhhhhcCC
Q 020548 260 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLDQRWSQFEKALSRMQDSGV 321 (324)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~---~~~~~~~~~~l~~~l~~~~~~~~ 321 (324)
.+ ...+.||+...+ .++.++.++.|+++|..+.+++.
T Consensus 414 --------~~-----------------~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~~~ 453 (459)
T PRK05965 414 --------RA-----------------FGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLADPD 453 (459)
T ss_pred --------Ee-----------------cCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11 013678888441 45566667777778877765554
No 317
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.42 E-value=5.4e-12 Score=115.10 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=121.4
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++.+|++++.+...|...+ +++|.++|+++|+++|+||++.++... ......|+++ ++|.+++ |.
T Consensus 220 ~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~-G~ 296 (441)
T PRK05769 220 EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAG-GL 296 (441)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccC-Cc
Confidence 57899999999888999887 999999999999999999999666321 1122468775 8899986 78
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH-HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG-LRMKEHCHRALIFARRMKKLGLKVLYPGLEDH 209 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~ 209 (324)
++ |+++++++++..... .. ..++.+ ++.. ++.++..++.++ ...++..++.++|.+.|++...+...+.
T Consensus 297 p~-gav~~~~~i~~~~~~-~~-~~T~~g-~p~~--~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~---- 366 (441)
T PRK05769 297 PL-GAVIGRAELMFLPPG-SH-ANTFGG-NPVA--AAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIG---- 366 (441)
T ss_pred cc-EEEEEehhhhhcCCC-CC-CCCCCc-CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee----
Confidence 86 889888887643221 11 112322 2222 222222233322 3445567777788887776532111111
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCH------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHH
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (324)
+..|.|.++.+++.+. .....+.+.+.. .|++. .+
T Consensus 367 -----------~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~Gil~-----------~~-------------- 407 (441)
T PRK05769 367 -----------DVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK---RGLLL-----------LG-------------- 407 (441)
T ss_pred -----------eeecceEEEEEEeccCCccccHHHHHHHHHHHHh---CCcEE-----------ec--------------
Confidence 2236788999988521 233445554442 33311 11
Q ss_pred hcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 284 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 284 ~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...+.+||+.. ...++++++.+.+++++.
T Consensus 408 ---~~~~~lr~~p~-l~~t~~~id~~~~~l~~~ 436 (441)
T PRK05769 408 ---AGKSAIRIIPP-LIITEEEADIGLEILEEA 436 (441)
T ss_pred ---CCCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 11367999988 766666666555555443
No 318
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.42 E-value=3.7e-11 Score=110.11 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=99.0
Q ss_pred HHHHHHhhhc-----CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCc
Q 020548 52 HEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGAD 115 (324)
Q Consensus 52 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d 115 (324)
++.+++.+.+ +++.+|++++.+...|.+.+ ++++.++|+++|+++|+||++.+|.. .-....+|
T Consensus 215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PD 294 (464)
T PRK06938 215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPD 294 (464)
T ss_pred HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCC
Confidence 5677777732 26899999998888887753 78999999999999999999977732 12334678
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
+++ ++|.+++ |.++ |.++.++++ +.+..... .. ..++++.. ++.++..++.+. ...++..+..+++.+.
T Consensus 295 iv~--~gKglgg-G~Pl-sAv~~~~~~-~~~~~~~~-~~-T~~gnpla--~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~ 365 (464)
T PRK06938 295 VVV--LSKAIGG-SLPL-AVVVYREWL-DTWQPGAH-AG-TFRGNQMA--MAAGSATLRYIKEHRLAEHAAAMGERLREH 365 (464)
T ss_pred EEE--eeccccC-CCce-EEEeehhHh-hccCCCCC-CC-CCCcCHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 888 8999987 7897 777777663 43322111 11 22233333 333333333322 2344455556666666
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|+++..+..... +..|.|.++.+++.
T Consensus 366 L~~l~~~~~~i~---------------~VrG~Glm~gie~~ 391 (464)
T PRK06938 366 LRQLQRDYPQLG---------------DVRGRGLMLGVEIV 391 (464)
T ss_pred HHHHHHhCCCee---------------eeeccceEEEEEec
Confidence 665321111111 23368999999985
No 319
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.42 E-value=6.2e-12 Score=115.10 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=110.8
Q ss_pred CCEEEEcCCCchhHHHHHhhh---------cCcccce------eEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcc
Q 020548 15 GGHVVAARTLYGGTHALLTHF---------FPRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTL 77 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG 77 (324)
.++|+.....|++....+... .+...|. .+..++.+|++++++.++. +++++|++++.....|
T Consensus 181 r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G 260 (474)
T PLN02482 181 REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSG 260 (474)
T ss_pred CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCC
Confidence 368999898898854321100 0110121 1233455689999988842 4688999999988889
Q ss_pred cccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.| ++++.++|++||+++|+||++.++.... .....|+++ ++|.+++ |.++ |.+++++++++.+.
T Consensus 261 ~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t--~gK~lgg-G~Pi-gav~g~~ei~~~~~ 336 (474)
T PLN02482 261 FIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTT--LGKVIGG-GLPV-GAYGGRREIMEMVA 336 (474)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEE--ecchhhC-CCce-EEEEEcHHHHHhhc
Confidence 8865 5689999999999999999986653211 223467765 8999986 7887 77799999988875
Q ss_pred Hhhh--hhhhccCCCCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 148 DLHQ--GALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 148 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
.... ...++. +++...++.. .++.+.. +...++..++.+++.+.|++..
T Consensus 337 ~~~~~~~~~T~~-gnpl~~aAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~ 388 (474)
T PLN02482 337 PAGPMYQAGTLS-GNPLAMTAGIHTLKRLQQ-PGTYEYLDKITKKLIQGILEAG 388 (474)
T ss_pred cCCCcccccCcc-hhHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHH
Confidence 3211 011122 2233232222 2222211 2345555666777777776653
No 320
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.42 E-value=3.1e-11 Score=116.48 Aligned_cols=238 Identities=15% Similarity=0.115 Sum_probs=157.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 93 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 93 (324)
++++|++++..|+.+...++..+.. .|++++.++ .++|++.+ ++..+++++| |-.|.+.|+++|++++|++|
T Consensus 152 ~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~v~~~~---~~~l~~~~---~~~~v~~q~P-n~~G~ied~~~i~~~~h~~g 223 (939)
T TIGR00461 152 KANKFFVAKDLHPQTKSVLHTRAKP-FGIEVIVVD---CSDIKKAV---DVFGCLLQYP-ATDGSILDYKQLIDALHSHK 223 (939)
T ss_pred CCCEEEECCCCCcchHHHHHHHHHh-cCcEEEEEc---HHHHhhcC---CEEEEEEECC-CCCeEEecHHHHHHHHHHcC
Confidence 4489999999999999999866655 899988874 56666554 5788888888 55899999999999999999
Q ss_pred CEEEEcCCC--CcCCCCccCCCCcEEEeCCccc-----cccCCCeeEEEEEcChhHHHHHHHhhhh--------------
Q 020548 94 VTVVVDNTF--SPLVLSPARLGADVVVHSISKF-----ISGGADIIAGAVCGPANLVNSMMDLHQG-------------- 152 (324)
Q Consensus 94 ~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~-----~~~~g~r~~G~i~~~~~~~~~l~~~~~~-------------- 152 (324)
++++++.-. ..+..+|.++|+|+++++..++ ||||+ +|++..++++.+.+-...-+
T Consensus 224 al~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~---aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~ 300 (939)
T TIGR00461 224 SLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH---AAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLA 300 (939)
T ss_pred CEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc---eeeeeecHhhHhhCCCCceeEEecCCCCccceee
Confidence 999996544 3345678899999998866654 33444 69998888777765321111
Q ss_pred -------hhhccCC----CCCHHHH---H--HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 153 -------ALMLLGP----TMNPKVA---F--ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 153 -------~~~~~~~----~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
..+..+. +...+.+ + +...+.+.+.+.-++...++.++.+.|++.|+++..+.+
T Consensus 301 LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~f---------- 370 (939)
T TIGR00461 301 LQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINKTW---------- 370 (939)
T ss_pred cccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc----------
Confidence 0000111 1111111 1 112233445555566678889999999998876543321
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
-..+.++++. ...+++.+++.. .|+. +. ...++.+++|+
T Consensus 371 ---------F~~~~v~~~~-~~~~~i~~~~~~---~gi~---l~-------------------------~~~~~~i~~s~ 409 (939)
T TIGR00461 371 ---------FDTLTVKVGN-GISSELLKAAEE---FNIN---LR-------------------------AVDTTTVGIAL 409 (939)
T ss_pred ---------cceEEEEeCC-CCHHHHHHHHHH---CCCe---ee-------------------------ecCCCEEEEEe
Confidence 1134555542 235556666553 2221 00 01246899999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 020548 297 GYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~ 314 (324)
. ..++.++++.|.+++.
T Consensus 410 ~-E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 410 D-ETTTKADVENLLKVFD 426 (939)
T ss_pred e-cCCCHHHHHHHHHHhc
Confidence 9 8899999999998885
No 321
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=99.41 E-value=8.5e-11 Score=101.69 Aligned_cols=245 Identities=18% Similarity=0.173 Sum_probs=163.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcc-cccChHHHHHHHHhc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL-AVANIPELSRLAHDK 92 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG-~~~~~~~i~~l~~~~ 92 (324)
+.++++++..+|+.+.+.++....- +|+++..++.+|++++++. .+..+..++++.|+ -.| ...+++++.+.+|++
T Consensus 163 k~~~~~V~~~vhpqt~~Vl~Tra~~-~g~~i~~~~~~d~~~l~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~ 239 (450)
T COG0403 163 KRNKFLVPKDVHPQTLDVLRTRAEG-LGIEIEVVDADDLDDLESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSA 239 (450)
T ss_pred cCceEEecCCCCHHHHHHHHhhccc-CceEEEEeccchhhhhhhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhc
Confidence 4689999999999999999888776 8999999999999999998 46789999999996 567 556799999999999
Q ss_pred CCEEEE--cCCCCcCCCCccCCCCcEEEeCCccc-----cccCCCeeEEEEEcChhHHHHHHHhhhh-------------
Q 020548 93 GVTVVV--DNTFSPLVLSPARLGADVVVHSISKF-----ISGGADIIAGAVCGPANLVNSMMDLHQG------------- 152 (324)
Q Consensus 93 ~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~-----~~~~g~r~~G~i~~~~~~~~~l~~~~~~------------- 152 (324)
|+++++ |-.-..+...|.++|+|++++|..-. ||||. +||+..+.++.+++-...-|
T Consensus 240 ~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh---ag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rL 316 (450)
T COG0403 240 GALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH---AGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRL 316 (450)
T ss_pred CCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc---eeeeeEhHhHhhcCCCceeeeeecCCCCchhhh
Confidence 988775 43334556788999999999998763 44443 69998888876655211100
Q ss_pred ------------hhhccCCCCCHHHHH-----HHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--CceeCCCCCCCchhH
Q 020548 153 ------------ALMLLGPTMNPKVAF-----ELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHE 213 (324)
Q Consensus 153 ------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~p~~~~~~~~~ 213 (324)
-.+++-++...+.+. +...+...+.+.-++..+.+.++.++|++.+ .++....+
T Consensus 317 aLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~f------- 389 (450)
T COG0403 317 ALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHF------- 389 (450)
T ss_pred hHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccc-------
Confidence 111222222211111 1223445566666778899999999999665 44432220
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
=..+.++++. +....++++... . ++.++ ..+++.+=
T Consensus 390 ------------Fdt~~v~~~~-~~~~~l~~~~~~---~---G~~L~-------------------------~~~~~~~~ 425 (450)
T COG0403 390 ------------FDTFTVRVPE-EVAEALLAAAIA---G---GINLR-------------------------RVDADTVL 425 (450)
T ss_pred ------------eeeEEEecch-hHHHHHHHHHHh---c---CCcee-------------------------eecCCceE
Confidence 0134555543 445555555443 1 11111 11234566
Q ss_pred EEeccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+++. -..+.+.++.|.+++...
T Consensus 426 ia~t-Et~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 426 IALT-ETTTKEDIDALVAAFGGV 447 (450)
T ss_pred EEee-cccCHHHHHHHHHHHhhh
Confidence 7776 566788888888887654
No 322
>PRK12403 putative aminotransferase; Provisional
Probab=99.40 E-value=8.1e-11 Score=107.96 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=100.2
Q ss_pred HHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.+.+ +++++|++++.+...|.+.+ +++|.++|++||+++|+||+++++.. .-.....|+++
T Consensus 209 ~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~ 288 (460)
T PRK12403 209 LQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS 288 (460)
T ss_pred HHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE
Confidence 456555522 56889999999888898876 99999999999999999999977632 12233578887
Q ss_pred eCCccccccCC-CeeEEEEEcChhHHHHHHHhhhh--hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHH-HHHHHHHH
Q 020548 119 HSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQG--ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHC-HRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~ 192 (324)
++|.+++ | .++ |.+++++++++.+...... .....++ .+..++.++..++.++ ...++.. ++.+++.+
T Consensus 289 --~gK~lgg-G~~Pi-ga~v~~~~i~~~~~~~~~~~~~~~T~~g--nPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~ 362 (460)
T PRK12403 289 --IAKGLTS-GYVPM-GGLVLSKRIAEALVEQGGVFAHGLTYSG--HPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQR 362 (460)
T ss_pred --Ecccccc-cccce-EEEEECHHHHHHHhcCCCccccCCCCCC--CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999987 5 476 6666778887776532110 1112222 3333333333333332 2344443 56666767
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++...+...+. +..|.|.++.+++.
T Consensus 363 ~L~~l~~~~~~i~---------------~vrG~Gl~~gie~~ 389 (460)
T PRK12403 363 CLREVFGDHPLVG---------------EVQGAGLVAALQFA 389 (460)
T ss_pred HHHHHHhcCCCEE---------------eEeecceEEEEEEc
Confidence 6665321111111 23368999999985
No 323
>PRK06062 hypothetical protein; Provisional
Probab=99.40 E-value=1e-11 Score=113.58 Aligned_cols=92 Identities=11% Similarity=0.208 Sum_probs=71.8
Q ss_pred HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 52 HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
++++++.++. +++++|++++.+...|.+.+ +++|.++|+++|+++|+||++++|... -....+|++
T Consensus 200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~ 279 (451)
T PRK06062 200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI 279 (451)
T ss_pred HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee
Confidence 5677777732 46899999999888898877 999999999999999999999776321 123357766
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~ 147 (324)
+ ++|.+++ | .++ |.++.++++++.+.
T Consensus 280 t--~gK~lgg-G~~Pi-gav~~~~~i~~~~~ 306 (451)
T PRK06062 280 T--FAKGVNS-GYVPL-GGVAISEAIAATFA 306 (451)
T ss_pred e--echhhhc-CCcCc-EEEEEcHHHHHHhc
Confidence 5 8999987 5 476 77777778888775
No 324
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.40 E-value=4.3e-11 Score=106.19 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=93.9
Q ss_pred hHHHHHHHc-cCCC-CEEEEcCCCchhHHHHHhh----------hcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEe
Q 020548 3 AISSVLMQL-CSSG-GHVVAARTLYGGTHALLTH----------FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~-~~~g-d~vl~~~p~y~~~~~~~~~----------~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 70 (324)
|+..++... ..+| ++|+.....|++.....-. +.+. -..+..++.+|++++++.+ .+++++|+++
T Consensus 93 A~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~--~~~~~~~~~~d~~~l~~~i-~~~~aAvivE 169 (364)
T PRK04013 93 AVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPL--VPGFKHIPFNDVEAAKEAI-TKETAAVIFE 169 (364)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCC--CCCcEEecCCCHHHHHHHh-cCCcEEEEEc
Confidence 455555533 2245 8999999999886433211 1111 1123455666899999999 7889999999
Q ss_pred cCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 71 SISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 71 ~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
+.+...|... | ++++.++|+++|+++|+||++.++... -.....|+++ ++|.+++ |.++ |.++.++
T Consensus 170 pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~--~gK~lgg-G~P~-~a~~~~~ 245 (364)
T PRK04013 170 PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVT--MGKGIGN-GVPV-SLTLTNF 245 (364)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEE--ecccccC-Ccee-EEEEecc
Confidence 9888777764 4 899999999999999999998665211 1233578777 8999988 6887 7666665
Q ss_pred hH
Q 020548 141 NL 142 (324)
Q Consensus 141 ~~ 142 (324)
++
T Consensus 246 ~~ 247 (364)
T PRK04013 246 DV 247 (364)
T ss_pred cc
Confidence 54
No 325
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.40 E-value=5e-11 Score=108.58 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=110.3
Q ss_pred CCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcc
Q 020548 15 GGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTL 77 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG 77 (324)
..+|+.....|++......... +...+. .+..++.+|++.+++.++. +++.+|++++.++..|
T Consensus 135 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G 214 (428)
T PRK12389 135 RTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFG 214 (428)
T ss_pred CCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCC
Confidence 3678888888887543221110 000111 2334455689999888842 4689999999999899
Q ss_pred cccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.+ +++|.++|+++|+++|+||+++++... -.....|+++ ++|.+++ |.++ |.+++++++++.+.
T Consensus 215 ~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt--~gK~lgg-G~Pi-~av~~~~~i~~~~~ 290 (428)
T PRK12389 215 IVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTA--LGKIIGG-GLPI-GAYGGRKDIMEQVA 290 (428)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeee--echhhcC-CCce-eEEeEHHHHHhhhc
Confidence 8876 899999999999999999999766221 1223567765 8999977 6887 77788888888774
Q ss_pred Hhhh-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHh
Q 020548 148 DLHQ-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~ 196 (324)
.... ......++++...+++ +..++.++ ...++..++.+++.+.|++
T Consensus 291 ~~~~~~~~~T~~gnpl~~Aaa--la~L~~l~~~~l~~~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 291 PLGPAYQAGTMAGNPASMAAG--IACLEVLQQEGVYEKLDRLGAMLEEGILE 340 (428)
T ss_pred cCCCcccccCCccCHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3111 0111222333333322 22222221 3445556666777766665
No 326
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.39 E-value=2.2e-11 Score=111.37 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=102.0
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|++++.+...|.+.+ +++|.++|++||+++|+||++.++.. .-....+|+++ ++|.+++ |.
T Consensus 221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~ 297 (457)
T PRK05639 221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS-GM 297 (457)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC-CC
Confidence 57999999999888888754 78999999999999999999966632 11233578888 8999987 68
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |.+++++++++ ...... . ...+..+. .+++++..++.+. ...++..++.+++.+.|++...+...+.
T Consensus 298 pi-~av~~~~~i~~-~~~~~~-~-~T~~g~p~--~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~--- 368 (457)
T PRK05639 298 GL-SGVIGRKELMD-LTSGSA-L-LTPAANPV--ISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIG--- 368 (457)
T ss_pred cc-eeEEehHHHHh-hcCCCc-c-cCCCcCHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEE---
Confidence 86 89989988887 322111 1 12223333 3333333333322 3345555666777777766321111111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC------HHHHHHHHHHhh
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMNYLQ 247 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~l~ 247 (324)
+..|.|.++.+++.. ......+.+.+.
T Consensus 369 ------------~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~ 401 (457)
T PRK05639 369 ------------DVRGKGLMIGVEIVKENGKPDPELTGKICWRAF 401 (457)
T ss_pred ------------eeccceeEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 233689999998842 223455655555
No 327
>PRK06105 aminotransferase; Provisional
Probab=99.39 E-value=2.5e-11 Score=111.31 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=104.7
Q ss_pred HHHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
.+++++.+. .+++++|++++.+...|...+ ++++.++|++||+++|+||++.++.. .-.....|++
T Consensus 204 ~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~ 283 (460)
T PRK06105 204 ANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL 283 (460)
T ss_pred HHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCee
Confidence 356677663 246899999999888888865 89999999999999999999966632 1123357877
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhh--h---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--G---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
+ ++|.+++...++ |.+++++++++.+..... + .....+++ +..++.++..++.+. ...++..+..+++
T Consensus 284 ~--~gK~lggG~~P~-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gn--pl~~aaa~a~L~~i~~~~l~~~v~~~g~~l 358 (460)
T PRK06105 284 V--MSKQLSSSYQPL-SAVLMNEKVYDPIADESGKIGTFGHGFTASGH--PVAAAVALENLAIIEERDLVGNAAERGARL 358 (460)
T ss_pred e--eecccccCcccc-eEEEEcHHHHHHHhcccccCcccccCCCCCCC--HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6 999998733576 889889888887754211 0 01122222 333333333333332 3456667777777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+.|++. .+. |... +..|.|.++.+++.
T Consensus 359 ~~~L~~l-~~~--~~v~-------------~vrG~Gl~~gie~~ 386 (460)
T PRK06105 359 QARLRAL-ADH--PLVG-------------EVRGVGLIAAVELV 386 (460)
T ss_pred HHHHHHh-hcC--CCeE-------------EEEecceEEEEEEe
Confidence 7777765 221 2100 23368889999884
No 328
>PRK07481 hypothetical protein; Provisional
Probab=99.39 E-value=3.5e-11 Score=110.11 Aligned_cols=152 Identities=12% Similarity=0.108 Sum_probs=97.8
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCC-
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA- 129 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g- 129 (324)
+++.+|++++.+...|...+ ++++.++|+++|+++|.||++.++.. .-....+|+++ ++|.+++ |
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g-G~ 288 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITS-GY 288 (449)
T ss_pred CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccC-CC
Confidence 57999999999888888754 88999999999999999999977632 12233578888 8999987 5
Q ss_pred CeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 130 DIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.++ |.+++++++++.+..... ..+...++++. .+++++..++.+ +...++..+..+++.+.|++.-.+..
T Consensus 289 ~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl--~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 365 (449)
T PRK07481 289 VPL-GATMVNARIADAFEANADFGGAIMHGYTYSGHPV--ACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFE 365 (449)
T ss_pred cCc-eEEEEcHHHHHHHhccCccccccccCCCCCCCHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 576 888888888887753210 01112222232 233333233332 23445556667777777766422111
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+. +..|.|.++.+++.
T Consensus 366 ~i~---------------~vrG~Glm~gi~l~ 382 (449)
T PRK07481 366 LVG---------------DVRGKGLMLALDLV 382 (449)
T ss_pred CeE---------------EEeecceEEEEEec
Confidence 111 23368899999884
No 329
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.38 E-value=2.5e-11 Score=110.55 Aligned_cols=208 Identities=13% Similarity=0.171 Sum_probs=120.9
Q ss_pred HHHHHHhhh--cCCceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~ 118 (324)
++++++.+. .+++.+|++++.+...|... .+++|.++|++||+++|+||+++++... .....+|+++
T Consensus 205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~ 284 (431)
T TIGR03251 205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA 284 (431)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE
Confidence 445555552 36799999999988889875 3889999999999999999999776432 1234678887
Q ss_pred eCCccccccCCCeeEEEEEcCh--hHHHHHHHhh-hhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPA--NLVNSMMDLH-QGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~--~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++|.+ + . +|++.+++ ++........ .... ..++++...+++ ...++.+. ...++..++.+++.+.
T Consensus 285 --~gK~~-~-~---~g~~~~~~i~~~~~~~~~~~~~~~~-T~~gnpl~~aaa--~a~L~~l~~~~l~~~~~~~g~~l~~~ 354 (431)
T TIGR03251 285 --FGKKT-Q-V---CGIMAGRRVDEVADNVFAVPSRLNS-TWGGNLVDMVRA--TRILEIIEEERLVDNARVQGAHLLAR 354 (431)
T ss_pred --ecccC-c-c---ceEEecchHHHhhhhcccCccccCC-CCCCCHHHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 78886 2 2 47776654 2222111111 1111 222333333222 22222221 2234445555555555
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
|++...+ +|.+.. +..+.|.++.+++++......+...+.. .|++. .+.
T Consensus 355 L~~l~~~--~~~~i~------------~vrg~G~~~~i~~~~~~~~~~~~~~l~~---~Gvl~-----------~~~--- 403 (431)
T TIGR03251 355 LHELAAE--FPHLVS------------NPRGRGLMCAFDLPSTADRDEVIRQLYR---EGVLL-----------LGC--- 403 (431)
T ss_pred HHHHHHh--Ccccee------------cccccceeEEEEeCCHHHHHHHHHHHHh---CCeEE-----------ecC---
Confidence 5543111 111000 1125788999999865555667776663 34321 110
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
..+.+|++++ ...++++++.+.+++++
T Consensus 404 --------------g~~~lr~~P~-l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 404 --------------GERSIRFRPP-LTVTREEIDAAIDAIRR 430 (431)
T ss_pred --------------CCCeEEEECC-ccCCHHHHHHHHHHHHh
Confidence 1267999999 88888888888777764
No 330
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.37 E-value=3.8e-11 Score=109.56 Aligned_cols=211 Identities=11% Similarity=0.131 Sum_probs=126.0
Q ss_pred HHHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
.+++++.++ .+++.+|++++.+...|...+ +++|+++|++||+++|+||++.++.. .-.....|++
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv 280 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL 280 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee
Confidence 457777773 256889999999999999987 99999999999999999999966632 1122356776
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
+ ++|.+++...++ |.++.++++++.+..... ......++ .+..++.++..++.+. ...++..++.+++
T Consensus 281 t--~gK~l~gG~~P~-gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g--~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l 355 (442)
T PRK13360 281 T--CAKGLTNGAIPM-GAVFVSSEIHDAFMQGPEAGIEFFHGYTYSG--HPLACAAALATLDLYEREGLLTRAARLAPYW 355 (442)
T ss_pred e--eeeccccCccce-EEEEEcHHHHHHhhcCCccccccccCCCCCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5 899997733676 778788888877643110 00112222 2333333333333322 3445556677777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-----HHHHHHHHHHhhccccccccccccCCccce
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETL 265 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~ 265 (324)
.+.|++... +|.+. +..|.|.+..+.+.. ...+..+...+.. .|++.
T Consensus 356 ~~~l~~l~~---~~~v~-------------~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~---~Gvl~--------- 407 (442)
T PRK13360 356 EDALHSLRD---APHVI-------------DIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFE---KGLMI--------- 407 (442)
T ss_pred HHHHHHhhc---CCCee-------------eeeccceEEEEEEecCCCCcchhHHHHHHHHHH---CCcEE---------
Confidence 777776431 11100 112567676676641 1223445554442 33311
Q ss_pred eccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 266 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+ ..+.+||+.. ...++++++.+.++|++.
T Consensus 408 --~~------------------~~~~lr~~Pp-l~~t~~eid~~~~~l~~~ 437 (442)
T PRK13360 408 --RY------------------TGDILALSPP-LIIEEAQIDELFDILAQA 437 (442)
T ss_pred --Ee------------------cCCEEEEeCC-CccCHHHHHHHHHHHHHH
Confidence 00 1257999988 666666666666666544
No 331
>PRK07046 aminotransferase; Validated
Probab=99.36 E-value=7.4e-11 Score=107.81 Aligned_cols=130 Identities=20% Similarity=0.184 Sum_probs=93.5
Q ss_pred CCEEEEcCCCchhHHHHHh-hh-------cCcccce------eEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 15 GGHVVAARTLYGGTHALLT-HF-------FPRACNI------TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~-~~-------~~~~~g~------~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
.++|+.....|++...... .. .+...|+ .+..++.+|++++++.+..+++++|++++.+...|.+.
T Consensus 156 r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~ 235 (453)
T PRK07046 156 RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVL 235 (453)
T ss_pred CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcC
Confidence 4789999988988642221 00 0000121 23344556999999998546899999999888788776
Q ss_pred C----hHHHHHHHHhcCCEEEEcCCCC---cCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 81 N----IPELSRLAHDKGVTVVVDNTFS---PLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 81 ~----~~~i~~l~~~~~~~~ivD~~~~---~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+ ++++.++|+++|+++|+||++. ++.- .-....+|+++ ++|.+++ |.++ |.+++++++++.+..
T Consensus 236 p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t--~gK~lgg-G~Pi-~av~g~~~i~~~~~~ 308 (453)
T PRK07046 236 PEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLV--VGKPIAG-GVPC-AVYGFSAELAERAQA 308 (453)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCcccee--ehhhhcC-CCcc-eeeeehHHHHHHHhh
Confidence 4 7899999999999999999985 2221 11233578876 8999987 7897 999999999988764
No 332
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.36 E-value=2.2e-11 Score=110.47 Aligned_cols=214 Identities=11% Similarity=0.122 Sum_probs=130.7
Q ss_pred CHHHHHHhhhc--CCceEEEEecC-CCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcE
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~-~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~ 116 (324)
|++++++.++. +++.+|++++. +...|... .+++|.++|+++|+++|+||++.++.. .-.....|+
T Consensus 190 d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi 269 (428)
T PRK07986 190 DIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDI 269 (428)
T ss_pred HHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCE
Confidence 56778877732 46889999984 66667643 288999999999999999999866632 112235688
Q ss_pred EEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 117 ~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++ ++|.+++ | .++ |.+++++++++.+...... .+...+++ +..++.++..++.++ ...++..++.+++
T Consensus 270 ~t--~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~g~--p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l 343 (428)
T PRK07986 270 LC--LGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGN--PLACAVANASLSLLESGDWQQQVAAIEAQL 343 (428)
T ss_pred EE--echhhhC-CcccC-cchhchHHHHHHhhcCCCCccccCCCCCcC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76 8999976 5 576 8888888988888642100 01122222 333333333333332 3455566777777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 270 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~ 270 (324)
.+.|++... +|.+. +..|.|.++.+++........+.+.+.. .|++. .+
T Consensus 344 ~~~l~~l~~---~~~i~-------------~vRg~Gl~~~ve~~~~~~~~~~~~~l~~---~Gl~~-----------~~- 392 (428)
T PRK07986 344 REELAPLRD---APMVA-------------DVRVLGAIGVVETTRPVNMAALQRFFVE---QGVWI-----------RP- 392 (428)
T ss_pred HHHHHHHhc---CCCEE-------------eEeccceEEEEEeCCcccHHHHHHHHHH---CCcEE-----------Ee-
Confidence 777776421 12110 2236788999998744345566666553 33311 11
Q ss_pred ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
..+.+|+..- +.-++++++.+.++|++.-+.
T Consensus 393 -----------------~g~~i~~~Pp-l~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 393 -----------------FGKLIYLMPP-YIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred -----------------cCCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Confidence 0257899887 666666666666666554333
No 333
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.7e-12 Score=109.65 Aligned_cols=256 Identities=12% Similarity=0.161 Sum_probs=164.7
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc------CCc------eEEEEecCCC
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ------GRT------KVLYFESISN 74 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~------~~v~~~~~~n 74 (324)
.+.+++.||--|+.....|.+...-+ ++-|..++-...+|.++||+.+++ ++| -+|+++...+
T Consensus 213 ~~p~l~~~gsLIiSDelNHaSi~~Ga-----RLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiys 287 (519)
T KOG1357|consen 213 NIPSLLGKGSLIISDELNHASLITGA-----RLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYS 287 (519)
T ss_pred CcceeecCCcceeeccccchheeccc-----cccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeecccee
Confidence 34456778877777777777666544 445777777777899999998842 222 2566678888
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CC---------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LV---------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~---------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
.-|.+.++.+++.+++++.++++.||++ .+ .. ..+...++|+..++++|++++. ||++.+++++.
T Consensus 288 mEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~----GGyiagsk~li 363 (519)
T KOG1357|consen 288 MEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA----GGYIAGSKELI 363 (519)
T ss_pred ccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc----cceecCcHHHH
Confidence 9999999999999999999999999998 22 21 1122236899999999999886 59999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCc---------ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERI---------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
+.++.... ....+.++++..+...+..+ ..-.++.++..+|+.+++..|++.++.+....
T Consensus 364 d~lrt~s~--~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~--------- 432 (519)
T KOG1357|consen 364 DYLRTPSP--SALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNN--------- 432 (519)
T ss_pred hhhccCCC--ceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCC---------
Confidence 98875443 12334444444433332221 12446778889999999999999887544222
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
.++++.+-+-.......|-.++.. .+ +++-.++ .|+++ +-...+|+
T Consensus 433 ----------dSpVvplll~~~~k~~~f~r~~l~---~n-igvVvvg------fPatp--------------l~e~r~R~ 478 (519)
T KOG1357|consen 433 ----------DSPVVPLLLYGPAKIVAFSREMLE---RN-IGVVVVG------FPATP--------------LLESRARF 478 (519)
T ss_pred ----------CCCcceeeecCcccccHHHHHHHh---cC-ceEEEEe------CCCch--------------HHHhHHHh
Confidence 233444444333334444444331 11 1222222 23321 12356888
Q ss_pred EeccCCCHHHHHHHHHHHHHhhh
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
... ...+.+.++.+.++.+...
T Consensus 479 c~S-a~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 479 CLS-ASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred hhc-ccccHHHHHHHHHHHhhhc
Confidence 888 7777766666666666554
No 334
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.35 E-value=2.8e-12 Score=109.85 Aligned_cols=194 Identities=18% Similarity=0.119 Sum_probs=127.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-----CCceEEEEecC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-----GRTKVLYFESI 72 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-----~~~~~v~~~~~ 72 (324)
|...+++++++|++.|++..+.|....+.- ......|.++..++.. ++++|++.+.. .++++|+++++
T Consensus 56 An~~al~~~~~~~~~vi~~~~aHi~~~E~g--a~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t 133 (290)
T PF01212_consen 56 ANQLALRAHLRPGESVICADTAHIHFDETG--AIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENT 133 (290)
T ss_dssp HHHHHHHHHHHTTEEEEEETTEHHHHSSTT--HHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESS
T ss_pred HHHHHHHHHHhcCCceeccccceeeeeccc--hhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEec
Confidence 456677888899999999998764332211 0001257777666543 79999998854 46899999999
Q ss_pred CCCc-cccc---ChHHHHHHHHhcCCEEEEcCCC-Cc-C---CCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 73 SNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-SP-L---VLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 73 ~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~-~~-~---~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+|.. |+++ ++++|.++||++|+.+++|.+. .. . ...+ ...++|.+..|++|.+++++ |++++++++
T Consensus 134 ~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~ 210 (290)
T PF01212_consen 134 TELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKE 210 (290)
T ss_dssp BTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHH
T ss_pred CcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEccccccc---ceEEEechH
Confidence 8864 7776 4678888999999999999985 11 1 1112 22379999999999998887 888899999
Q ss_pred HHHHHHHhhhhhhhccCCCCC---HHHH-----HHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 142 LVNSMMDLHQGALMLLGPTMN---PKVA-----FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+++....+.. ..|+.+. ...+ ...+..++....+.++..++++++.+.|+..+..+..|.
T Consensus 211 ~i~~~~~~~k----~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~~~~~~~ 278 (290)
T PF01212_consen 211 FIAKARRQRK----RLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEALGGVLPRPV 278 (290)
T ss_dssp HHHHHHHHHH----HHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEECEEEETTS
T ss_pred HHHHHHHHHH----HhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence 7776655544 1121111 1222 123333344445667778889999999999887655444
No 335
>PRK07482 hypothetical protein; Provisional
Probab=99.35 E-value=2.9e-11 Score=110.93 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=101.7
Q ss_pred HHHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
++++++.+. .+++.+|++++.+...|.+.+ +++|.++|++||+++|+||++.+|.. .-....+|++
T Consensus 206 ~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv 285 (461)
T PRK07482 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLI 285 (461)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEE
Confidence 567777773 256899999998888887753 78999999999999999999977732 1223468888
Q ss_pred EeCCccccccCCC-eeEEEEEcChhHHHHHHHhh--hh---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGAD-IIAGAVCGPANLVNSMMDLH--QG---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ |. ++ |.++.++++++.+.... .+ .+...++++.. ++.++..++.+. ...++..+..++
T Consensus 286 ~--~gKgl~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~--~Aaa~a~L~~~~~~~l~~~~~~~g~~ 359 (461)
T PRK07482 286 T--VAKGLTS-AYAPL-SGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPIC--AAAALANLDILERENLVGNAAEVGAY 359 (461)
T ss_pred E--Ecccccc-Ccccc-ceeeecHHHHHHHhcccccCCccccCCCCCcCHHH--HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8 8999987 54 77 77777888877665311 00 11122233333 333332333322 233445566666
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|++.-.+...+. +..|.|.++.+++.
T Consensus 360 l~~~L~~l~~~~~~v~---------------~vrG~Glm~giel~ 389 (461)
T PRK07482 360 FRARLRAAFGDHPLVG---------------EVRGVGMLAAVEFV 389 (461)
T ss_pred HHHHHHHHHhcCCCEE---------------EEeeceeEEEEEec
Confidence 6666664321111111 23368899999985
No 336
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.35 E-value=1.6e-10 Score=102.53 Aligned_cols=185 Identities=13% Similarity=0.080 Sum_probs=118.5
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHh-hhcCcccce-eEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLT-HFFPRACNI-TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~-~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
.|+.+++.+++ ++||+|++.. .|+. -|. .++.+ .|+ ++..++.+ ++++++. + +.|++++.-
T Consensus 69 ~a~Eaa~~nl~~~~g~~vLv~g-~FG~---r~~~eia~~-~g~~~v~~l~~~~g~~~~~~~ve~---~---~~v~~vhnE 137 (374)
T TIGR01365 69 GAVEMALWSMLGCRGVDVLAWE-SFGK---GWVTDVTKQ-LKLPDVRVLEAEYGKLPDLKKVDF---K---NDVVFTWNG 137 (374)
T ss_pred HHHHHHHHHcCCCCCCeEEEEC-HHHH---HHHHHHHHh-cCCCCcEEEcCCCCCCCCHHHcCC---C---CCEEEecCC
Confidence 36788888888 5899998864 3333 222 33333 666 35554432 6777752 2 226678888
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh-
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ- 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~- 151 (324)
..||...|++++.+.. +++++|||.+ +.+.-.+.++ +.|+++.|..|.+++|++- ++++.+++.++.+.....
T Consensus 138 TSTGv~npv~~i~~~~--~~~lliVDav-Ss~g~~~l~~d~iDv~~tgsQK~L~~ppGl--s~v~vs~~Al~~~~~~~~y 212 (374)
T TIGR01365 138 TTSGVRVPNGDFIPAD--REGLTICDAT-SAAFAQDLDYHKLDVVTFSWQKVLGGEGAH--GMLILSPRAVARLESYTPA 212 (374)
T ss_pred Cchheecccccccccc--CCCcEEEEcc-chhcCCCCChhHCcEEEEechhccCCCCce--EEEEECHHHHHHHhhcCCC
Confidence 8899999987666432 4899999998 4444444444 5999999999999987644 677777777766553110
Q ss_pred ----h-------------hh-hccCCCCCHHHHHHHhcCc------ccHHHHHHHHHHHHHHHHHHHHhCC-Ccee
Q 020548 152 ----G-------------AL-MLLGPTMNPKVAFELSERI------PHLGLRMKEHCHRALIFARRMKKLG-LKVL 202 (324)
Q Consensus 152 ----~-------------~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~ 202 (324)
. .. ....+++.......+...+ ..++.+.+|+.++++.++++++++| +.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~ 288 (374)
T TIGR01365 213 WPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFL 288 (374)
T ss_pred CCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 0 00 0112233333222222212 2488899999999999999999998 4443
No 337
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.34 E-value=7.3e-11 Score=107.77 Aligned_cols=210 Identities=11% Similarity=0.136 Sum_probs=126.3
Q ss_pred HHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.++. +++.+|++++.+...|...+ ++++.++|+++|+++|+||+++++.. .-.....|+++
T Consensus 205 ~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~ 284 (445)
T PRK09221 205 DDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT 284 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE
Confidence 566776631 56899999999999999887 99999999999999999999866632 11223467765
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++|.+++...++ |.+++++++++.+..... ......++ .+..++.++..++.+. ...++..++.+++.
T Consensus 285 --~gK~l~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~--~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 359 (445)
T PRK09221 285 --FAKGLTNGAIPM-GAVIASDEIYDAFMQGPEYAIEFFHGYTYSA--HPVACAAGLATLDIYREEDLFERAAELAPYFE 359 (445)
T ss_pred --eccccccCcccc-eeeEEcHHHHHhhccCcccccccccccCCCc--CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 899997743676 888888888887653110 00112222 2333333333333322 34566677777888
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHhhccccccccccccCCcccee
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
+.|++... +|.+. +..|.|.+..+++... .....+.+.+.. .|++.
T Consensus 360 ~~l~~l~~---~~~v~-------------~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~---~Gv~~---------- 410 (445)
T PRK09221 360 DAVHSLKG---LPHVI-------------DIRNIGLVAGIELAPRPGAPGARGYEAFMKCFE---KGLLV---------- 410 (445)
T ss_pred HHHHhhcc---CCCEE-------------EEecCceEEEEEEecccccccchHHHHHHHHHH---CCeEE----------
Confidence 87776521 12100 1125677777777521 123445555442 33311
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+ ..+.+||+.. ...++++++.+.++|++.
T Consensus 411 -~~------------------~~~~lr~~Pp-l~~t~~eid~~~~~l~~~ 440 (445)
T PRK09221 411 -RY------------------TGDTIALSPP-LIIEKAQIDELVDALGDA 440 (445)
T ss_pred -ee------------------cCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 10 1257999988 666666666655555443
No 338
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.34 E-value=4.8e-11 Score=108.24 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=125.5
Q ss_pred HHHHHhhhcCCceEEEEecC-CCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeC
Q 020548 53 EMVNSAIVQGRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHS 120 (324)
Q Consensus 53 ~~l~~~l~~~~~~~v~~~~~-~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S 120 (324)
+.+++.+ .+++.+|++++. +...|... .++++.++|++||+++|+||++.++... -.....|+++
T Consensus 191 ~~~~~~~-~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t-- 267 (422)
T PRK05630 191 RSLELLI-DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMC-- 267 (422)
T ss_pred HHHHHHH-hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeee--
Confidence 4455555 568999999984 88778764 3789999999999999999999666421 1223577774
Q ss_pred CccccccCC-CeeEEEEEcChhHHHHHHHhhh----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 121 ISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 121 ~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++|.+++ | .++ |.+++++++.+.+..... ......++++ ..++..+..++.+. ...++..++.+++.+.
T Consensus 268 ~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~P--la~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~ 343 (422)
T PRK05630 268 VGKALTG-GFMSF-AATLCTDKVAQLISTPNGGGALMHGPTFMANP--LACAVAHASLEIIETGMWRKQVKRIEAELIAG 343 (422)
T ss_pred eechhhc-Ccccc-ceeeccHHHHHHHhccCCCCccccCCCCcCCH--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 8999976 5 465 999999998887753100 0011222333 33333222222222 2334556666777776
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
|++.. + +|.+. +..|.|.++.+++.+......+.+.+.. .|++. .+
T Consensus 344 L~~l~-~--~~~v~-------------~vRg~Gl~~~ie~~~~~~~~~~~~~~~~---~Gl~~-----------~~---- 389 (422)
T PRK05630 344 LSPLA-H--LPGVA-------------DVRVLGAIGVVEMEQPVDMEEATQAAVD---HGVWL-----------RP---- 389 (422)
T ss_pred HHHhh-c--CCCee-------------eeeccccEEEEEECCcccHHHHHHHHHH---CCeEE-----------Ee----
Confidence 66432 1 12211 2336899999999743334556655553 33311 10
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+||... +.-++++++.+.++|+..
T Consensus 390 --------------~g~~l~~~Pp-L~it~~~i~~~~~~l~~a 417 (422)
T PRK05630 390 --------------FGRLVYVMPP-YITTSEQIAQICAALAAA 417 (422)
T ss_pred --------------cCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 0257898887 666666666666666544
No 339
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.34 E-value=7.5e-11 Score=107.11 Aligned_cols=176 Identities=12% Similarity=0.106 Sum_probs=111.0
Q ss_pred CHHHHHHhhh--cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 51 DHEMVNSAIV--QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~--~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
+++.+++.+. .+++.+|++++. +...|...+ ++++.++|++||+++|+||++.++... -.....|+
T Consensus 192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi 271 (429)
T PRK06173 192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDI 271 (429)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCE
Confidence 3666777773 257999999985 888887743 789999999999999999999666321 12335787
Q ss_pred EEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh---hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 117 ~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++ ++|.+++ | .++ +.++.++++++.+..... ..+...++ .+..++.++..++.+. ...++..++.+++
T Consensus 272 v~--~gK~l~g-G~~p~-~a~~~~~~i~~~~~~~~~~~~~~~~T~~g--~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l 345 (429)
T PRK06173 272 MC--IGKALTG-GYLTL-SATITTEAIAQTICSGEAKCFMHGPTFMA--NPLACAIAAESIRLLLESPWQQNIQRIEAQL 345 (429)
T ss_pred EE--eehhhhC-Ccccc-ceEEecHHHHHHHhcCCCCccccCCCCCc--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77 8999976 5 465 888888888887753110 01111122 3344444333333332 2355567777788
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.+.|++.. . +|.+. +..+.|.++.+++.+......+.+.+..
T Consensus 346 ~~~L~~~~-~--~~~v~-------------~vRg~Gl~~~iel~~~~~~~~i~~~l~e 387 (429)
T PRK06173 346 KQELAPAA-E--FDSVA-------------EVRVLGAIGVVEMKEPVNMATLQPRFVE 387 (429)
T ss_pred HHHHHHhh-c--CCCee-------------eeeccceEEEEEeCCcccHHHHHHHHHH
Confidence 88887541 1 12110 1225788999999754445566666653
No 340
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.34 E-value=5.9e-11 Score=108.55 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=103.7
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
++++++.+. .+++.+|++++ ++...|...+ ++++.++|++||+++|+||++.++... -....+|++
T Consensus 208 ~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDiv 287 (453)
T PRK06943 208 LADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFL 287 (453)
T ss_pred HHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeE
Confidence 467777773 25799999998 4888887653 789999999999999999999777421 123357888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh--h--hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ--G--ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
+ ++|.+++ | .++ |.++.++++++.+..... . .....++++.. ++.++..++.++ ...++..+.-+++
T Consensus 288 t--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~--~aaa~a~L~~i~~~~l~~~~~~~G~~l 361 (453)
T PRK06943 288 C--LSKGISG-GYLPL-SLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLA--CRAALATLDLFAEDDVLARNARKSARL 361 (453)
T ss_pred e--eehhhcc-Ccccc-eEEEEcHHHHHhhcccCccCCccCCCCCCCCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 8999987 6 587 888888888887753210 0 11122233333 333332333322 3445556667777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+.|+++.. +|.+. +..|.|.++.+++.
T Consensus 362 ~~~L~~l~~---~~~v~-------------~vrG~Gl~~gvel~ 389 (453)
T PRK06943 362 RAALAPLAA---HPQVR-------------HLRQRGTIFAFDVA 389 (453)
T ss_pred HHHHHHHhc---CCCEE-------------eEeccccEEEEEEc
Confidence 777776521 12211 22368999999985
No 341
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.33 E-value=9e-11 Score=107.54 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=99.0
Q ss_pred HHHHHhhhc-CCceEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCC
Q 020548 53 EMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSI 121 (324)
Q Consensus 53 ~~l~~~l~~-~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~ 121 (324)
+.+++.++. +++++|+++++++..+...| ++++.++|++||+++|+||+++++... -.....|+++ +
T Consensus 218 ~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~ 295 (459)
T PRK06082 218 DYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--I 295 (459)
T ss_pred HHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--e
Confidence 557777732 46899999998876444455 889999999999999999999766321 1233578887 8
Q ss_pred ccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCC
Q 020548 122 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
+|.+++...++ |.++.++++......... . ...++.+.. ++.++..++.+. ...++..++.+++.+.|++...
T Consensus 296 gKgl~gG~~P~-~av~~~~~i~~~~~~~~~-~-~T~~gnpl~--~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~ 370 (459)
T PRK06082 296 GKGLGGGLVPI-AAMITKDKYNTAAQISLG-H-YTHEKSPLG--CAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKA 370 (459)
T ss_pred cccccCCCCcc-eEEEEcHHHHhhccCCCC-C-CCCCcCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99998733587 877777776543311111 1 122233332 333322333322 3455667777777777776422
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+...+. +..|.|.++.+++.
T Consensus 371 ~~~~i~---------------~vrG~Gl~~~ve~~ 390 (459)
T PRK06082 371 KYPLIG---------------DVRGIGLLWGVELV 390 (459)
T ss_pred hCCCee---------------eeeeccceeEEEEc
Confidence 111111 23368999999985
No 342
>PRK06917 hypothetical protein; Provisional
Probab=99.33 E-value=1.3e-10 Score=106.25 Aligned_cols=162 Identities=12% Similarity=0.131 Sum_probs=99.9
Q ss_pred HHHHHHhhhc---CCceEEEEecCCCC-cccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcE
Q 020548 52 HEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~~---~~~~~v~~~~~~np-tG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~ 116 (324)
++.+++.+.. +++.+|++++.+.. .|.+.+ ++++.++|+++|+++|+||++.++.. .-.....|+
T Consensus 185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi 264 (447)
T PRK06917 185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDI 264 (447)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCE
Confidence 4566776632 46899999987653 445543 78999999999999999999966631 112335787
Q ss_pred EEeCCccccccCCC-eeEEEEEcChhHHHHHHHhhhh--hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQG--ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 117 ~~~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++ ++|.+++ |. ++ |.+++++++++.+...... .+...+++ +..++.++..++.+. ...++..++.+++.
T Consensus 265 ~~--~gK~l~~-G~~Pi-~a~~~~~~i~~~~~~~~~~~~~~~T~~gn--pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 338 (447)
T PRK06917 265 MT--LGKGLGA-GYTPI-AATVVSDRVMEPILRGSRSIMSGHTLSAN--PLSAATALAVLEYMEKHNLPEKAAEKGEYLI 338 (447)
T ss_pred EE--eeehhcc-CCcce-EEEEEcHHHHHHHhccCcccccccCCCCC--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 76 8999976 54 76 8888888888877532110 01122222 333333333333332 34455666667777
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|+++..+...+. +..|.|.++.+++.
T Consensus 339 ~~L~~l~~~~~~i~---------------~vrG~Gl~~~ie~~ 366 (447)
T PRK06917 339 KGLQKVQQQSTIIG---------------DVRGKGLLIGVEFV 366 (447)
T ss_pred HHHHHHHhcCCCEE---------------EEeecceEEEEEEe
Confidence 77766432111111 23368899999884
No 343
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.32 E-value=8.9e-11 Score=106.80 Aligned_cols=211 Identities=11% Similarity=0.084 Sum_probs=130.0
Q ss_pred CHHHHHHhhhc--CCceEEEEecC-CCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~-~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
|++++++.+.. +++++|++++. ++..|... ++++|.++|+++|+++|+||++.++... -.....|+
T Consensus 193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi 272 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDI 272 (427)
T ss_pred HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCE
Confidence 46677777732 46889999985 67666543 5889999999999999999998555321 12235787
Q ss_pred EEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 117 ~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++ ++|.+++ | ..+ +.++.++++++.+...... .....+++ +..++.++..++.+. ...++..++.+++
T Consensus 273 ~~--~gK~l~g-G~~p~-~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~--p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l 346 (427)
T TIGR00508 273 LC--VGKALTG-GYMTL-SATVTTDKVAQTISSGEAGCFMHGPTFMGN--PLACAVAEASLAILLEGEWQKQVSAIENQL 346 (427)
T ss_pred EE--echhhhc-Ccccc-eEEEEcHHHHHHHhcCCCCccccCCCCCcC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76 8999965 5 365 8888888888888642110 01111222 222222222222221 3346667778888
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 270 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~ 270 (324)
.+.|++... .|... ...|.|.++.+.+.+......+.+++.. .|++. .+
T Consensus 347 ~~~L~~l~~---~~~i~-------------~vrg~G~~~~i~~~~~~~~~~~~~~l~~---~Gv~~-----------~~- 395 (427)
T TIGR00508 347 KRELSPLRK---NPVVK-------------DVRVLGAIGVVEMYKPVNVEELQKKFVE---QGVWI-----------RP- 395 (427)
T ss_pred HHHHHHhhc---CCCEE-------------eEeccccEEEEEECCccCHHHHHHHHHH---CCeEE-----------Ee-
Confidence 888887643 12111 1225788999999743345566666653 33311 11
Q ss_pred ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|++.. ...++++++.+.+++++.
T Consensus 396 -----------------~~~~l~~~pp-l~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 396 -----------------FGKLIYVMPP-YIITTEQLQKLTAALIEA 423 (427)
T ss_pred -----------------cCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 0246899888 666777777777776554
No 344
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=99.32 E-value=1.4e-10 Score=102.93 Aligned_cols=187 Identities=19% Similarity=0.130 Sum_probs=114.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccCh
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 82 (324)
|+.++.+.--++.++|+++...|+.+...++.++.. .|++++.++.++-... . ++++.+|++++|+ -.|.+.++
T Consensus 142 a~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~iv~~~~~~~~~~---d-~~~~a~v~vq~Pn-~~G~~ed~ 215 (429)
T PF02347_consen 142 AMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAP-LGIEIVEVPLDEDGTT---D-DDDTAAVMVQNPN-TFGVFEDI 215 (429)
T ss_dssp HHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCH-CCEEEEEE-BBTTCSB-----STTEEEEEEESS--TTSB--TH
T ss_pred HHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhh-CCeEEEEecccccCCc---c-ccCeEEEEeecCC-CCceEeeH
Confidence 343444433344579999999999999988877765 7999988875421100 0 5789999999995 58999999
Q ss_pred HHHHHHHHhcCCEEEEcCCC---CcCCCCccCCCCcEEEeCCccccccC---CCeeEEEEEcChhHHHHHHHhhhh----
Q 020548 83 PELSRLAHDKGVTVVVDNTF---SPLVLSPARLGADVVVHSISKFISGG---ADIIAGAVCGPANLVNSMMDLHQG---- 152 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~---~~~~~~~~~~~~d~~~~S~sK~~~~~---g~r~~G~i~~~~~~~~~l~~~~~~---- 152 (324)
++|.+++|++|+++++ .+- ......|.++|+|+++++ +|.||.| |++-.|++..++++++.+-...-+
T Consensus 216 ~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D 293 (429)
T PF02347_consen 216 KEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKD 293 (429)
T ss_dssp HHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEB
T ss_pred HHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccc
Confidence 9999999999999987 553 223467889999999887 8876644 222259998888877766422110
Q ss_pred ---------------------hhhccCCCCCHHH-----HHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 153 ---------------------ALMLLGPTMNPKV-----AFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 153 ---------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
-++++-++...+. .++...+.+.+.+.-++...++.++.+.|++.
T Consensus 294 ~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 294 ADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp CCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112222222221 12233344557777777899999999999987
No 345
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.31 E-value=4.1e-11 Score=112.88 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH-HhhhcCcccceeEEEecCC----------C-----HHHHHHhhhcC--C
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDIS----------D-----HEMVNSAIVQG--R 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~-~~~~~~~~~g~~~~~~~~~----------d-----~~~l~~~l~~~--~ 63 (324)
+|+..++++.+++||.|++..++|-+.... + .+.|..++++.+. + .+.+++++++. .
T Consensus 201 ~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaL-----iLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~ 275 (720)
T PRK13578 201 ASNKVVTNALLTPGDLVLFDRNNHKSNHHGAL-----IQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPE 275 (720)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCcc
Confidence 467888999999999999999999998863 4 2367888787542 3 45588887432 1
Q ss_pred -------ceEEEEecCCCCcccccChHHHHHH-HHhcCCEEEEcCCC-CcCCCCc---------cCCCCc----EEEeCC
Q 020548 64 -------TKVLYFESISNPTLAVANIPELSRL-AHDKGVTVVVDNTF-SPLVLSP---------ARLGAD----VVVHSI 121 (324)
Q Consensus 64 -------~~~v~~~~~~nptG~~~~~~~i~~l-~~~~~~~~ivD~~~-~~~~~~~---------~~~~~d----~~~~S~ 121 (324)
.+++++++|+ -.|.+.++++|+++ ++.++ ++++|||| +.+.+.| .+.|+| +++.|.
T Consensus 276 ~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QSt 353 (720)
T PRK13578 276 RADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSV 353 (720)
T ss_pred ccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEECh
Confidence 5899999885 47999999999998 68888 99999999 4443333 244889 999999
Q ss_pred ccccccCCCeeEEEEEc
Q 020548 122 SKFISGGADIIAGAVCG 138 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~ 138 (324)
||.+++ ...++++-.
T Consensus 354 HKtL~a--lTQaS~LHv 368 (720)
T PRK13578 354 HKQQAG--FSQTSQIHK 368 (720)
T ss_pred hhcchh--hhhHhhhhc
Confidence 999854 443466633
No 346
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.31 E-value=2.4e-11 Score=108.25 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=115.3
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc----CCce-EEEEecCCCCcccccChHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ----GRTK-VLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~----~~~~-~v~~~~~~nptG~~~~~~~i~ 86 (324)
.|++++-.|.+....+ .++|+.++.++.+ |+++|++++.+ ..+- +|+.+..+..+|.+.|+++|+
T Consensus 143 ~i~~s~~aH~S~~Kaa-----~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~ 217 (373)
T PF00282_consen 143 VIYVSEQAHYSIEKAA-----RILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIA 217 (373)
T ss_dssp EEEEETTS-THHHHHH-----HHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHH
T ss_pred ccccccccccHHHHhc-----ceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHh
Confidence 5777777899988888 3467777777654 78888888732 2233 566677999999999999999
Q ss_pred HHHHhcCCEEEEcCCCCc--CCCC---ccCC---CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh---
Q 020548 87 RLAHDKGVTVVVDNTFSP--LVLS---PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM--- 155 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~--~~~~---~~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~--- 155 (324)
++|+++++++.||.+|++ +... .... .+|-+..++||+++.|-.. +-+++.++............+..
T Consensus 218 ~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~-~~~l~r~~~~l~~~~~~~~~Yl~~~~ 296 (373)
T PF00282_consen 218 DICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGC-GVLLVRDKSDLRDAFSINADYLGNDD 296 (373)
T ss_dssp HHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS--EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred hhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccc-eeEEeecccchHHHhccChhhhcccc
Confidence 999999999999999966 2211 1111 5899999999999886655 24446666555433211100000
Q ss_pred ----------ccC--CC--CCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeC
Q 020548 156 ----------LLG--PT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLY 203 (324)
Q Consensus 156 ----------~~~--~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~ 203 (324)
..+ ++ ...+..+..+. +.+.+.+++++..+.++++.+.|++.+. ++..
T Consensus 297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~ 361 (373)
T PF00282_consen 297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN 361 (373)
T ss_dssp SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 011 11 12233343333 3455778889999999999999999875 5543
No 347
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.31 E-value=4.7e-11 Score=109.50 Aligned_cols=161 Identities=9% Similarity=0.044 Sum_probs=102.5
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
++++++.++ .+++.+|++++ ++...|.+.+ ++++.++|+++|+++|+||++.++.. .-.....|++
T Consensus 210 ~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv 289 (460)
T PRK06916 210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIM 289 (460)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCee
Confidence 556677773 25799999998 6888887753 78999999999999999999966632 1123357888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHhh----h-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----Q-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ | .++ |.+++++++++.+.... . ......++.+. .++.++..++.+. ...++..++.++
T Consensus 290 ~--~gK~l~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl--~~aaa~a~l~~l~~~~l~~~~~~~g~~ 363 (460)
T PRK06916 290 T--AGKGLTG-GYLPI-AITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPL--GCAVALANLELYEKTNLIEQVARKTEY 363 (460)
T ss_pred e--eehhhhc-Ccccc-ceeeecHHHHHHhhccccccCccccCCCCCCCHH--HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7 8999987 6 587 88888888887764311 0 00112222223 2333332333222 345556677777
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|+++. + +|.+. +..|.|.++.+++.
T Consensus 364 l~~~l~~l~-~--~~~v~-------------~vrG~Glm~giel~ 392 (460)
T PRK06916 364 VATQLEDLF-A--LKHVG-------------DIRQLGLMVGIELV 392 (460)
T ss_pred HHHHHHHhh-c--CCCeE-------------EeecCCceeeEEee
Confidence 777777652 1 12110 23368889999885
No 348
>PLN02452 phosphoserine transaminase
Probab=99.30 E-value=2.5e-10 Score=101.18 Aligned_cols=254 Identities=12% Similarity=0.070 Sum_probs=155.6
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec--------CCCHHHHHHhhhcCCceEEEEecCCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD--------ISDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~--------~~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
++.+++.+++.+||++++....+.+- -+...+.+ +|...+... ..++++++ . +++.+.|.+++...
T Consensus 83 ~~ea~~~nl~~~~~~~l~~~~G~fg~--r~~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~hnET 156 (365)
T PLN02452 83 QFAAIPLNLCKPGDKADFVVTGSWSK--KAAKEAKK-YCKTNVIASGKDEKYTKIPSVSEWE--L-TPDAKFVHICANET 156 (365)
T ss_pred HHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHH-hCCCcEEEecCCCCCCCCCChHHcC--C-CCCCcEEEECCCCC
Confidence 57788888899999888887655432 22223333 454332221 12455542 1 45788999999888
Q ss_pred Ccccc-cChHHHHHHHHhcCCEEEEcCCCCcCCC---CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 75 PTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVL---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 75 ptG~~-~~~~~i~~l~~~~~~~~ivD~~~~~~~~---~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.||.. .|++++. ++++|+|.+. .+.. +..++++|+ .|.+|.+|++| .|+++.++++++.+....
T Consensus 157 stGv~~~~~~~i~------~~~lvVDa~S-s~g~~pidv~~~~v~~--~saqK~lGP~G---l~~v~vr~~~l~~~~~~~ 224 (365)
T PLN02452 157 IHGVEFKDYPDVG------NVPLVADMSS-NFLSKPVDVSKYGVIY--AGAQKNVGPSG---VTIVIIRKDLIGNARPIT 224 (365)
T ss_pred CCcEecCcccccC------CCeEEEECCc-cccCcccCHHHcCEEE--EecccccCCCC---eEEEEEcHHHHhhcccCC
Confidence 99995 7776664 3899999995 3333 333445544 69999998777 488988888887654321
Q ss_pred hhh---h-----hccCCCCCHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHH
Q 020548 151 QGA---L-----MLLGPTMNPKVAFELSERIP------HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 151 ~~~---~-----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~ 215 (324)
..+ . ...-+++.....+.+...++ .++.+.++++++++.+.++|++. ++ ...+. . +.
T Consensus 225 ~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~-y~~~~-~--~~---- 296 (365)
T PLN02452 225 PGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF-YVCPV-E--KS---- 296 (365)
T ss_pred CchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCC-C--hH----
Confidence 110 0 01112333333222222222 36677788899999999999986 44 11111 0 00
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
..+..+++|.+++.....+|++.++. .|+.. .++... ..+ +|+|
T Consensus 297 -------~rs~~~vsF~~~~~~~~~~f~~~~~~---~g~~~-----------~~G~r~--------------~gg-~R~s 340 (365)
T PLN02452 297 -------VRSLMNVPFTLGGSELEAEFVKEAAK---AGMVQ-----------LKGHRS--------------VGG-MRAS 340 (365)
T ss_pred -------HhCCeEEEEEcCCchhHHHHHHHHHH---CCCcc-----------cCCccc--------------cCc-eEEE
Confidence 01455889999866678888888885 34311 122110 123 9999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhhc
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+= ..-..+.++.|.+.++.+.++
T Consensus 341 ~y-na~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 341 IY-NAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred Cc-CCCCHHHHHHHHHHHHHHHHh
Confidence 85 566777889999999888654
No 349
>PRK06148 hypothetical protein; Provisional
Probab=99.30 E-value=1.2e-10 Score=116.09 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=123.4
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cCCCCcEEEeCCccccccCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGA 129 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~~~~d~~~~S~sK~~~~~g 129 (324)
+++++|++++.+...|.+.+ ++++.++|+++|+++|+||++.+|.... .....|+++ ++|.+|+ |
T Consensus 783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lgg-G 859 (1013)
T PRK06148 783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGN-G 859 (1013)
T ss_pred CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccC-C
Confidence 46899999998888888865 8899999999999999999997663211 223577777 8999987 7
Q ss_pred CeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 130 DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
.++ |.+++++++++.+.....+.. ..++++...+++. ..++.+. ...++..+..+++.+.|++...+.....
T Consensus 860 ~Pl-gav~~~~ei~~~~~~g~~~~~-Tf~gnpla~aaa~--a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~-- 933 (1013)
T PRK06148 860 HPM-GAVVTTREIADSFDNGMEYFN-TFGGNPVSCAIGL--AVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG-- 933 (1013)
T ss_pred cce-EEEEEcHHHHhhccCCCcccc-CCCCCHHHHHHHH--HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCce--
Confidence 897 888888888887753221111 3333333333332 2232222 3445556666777777766422111111
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC--------HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCH
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET--------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 279 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~--------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 279 (324)
+..|.|.++.+++.. ......+.+.+.. .|++. .+
T Consensus 934 -------------~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~---~Gvl~-----------~~---------- 976 (1013)
T PRK06148 934 -------------DVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE---RGILI-----------GT---------- 976 (1013)
T ss_pred -------------EEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh---CCeEE-----------ec----------
Confidence 234689999999852 1234556666553 33311 11
Q ss_pred HHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 280 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 280 ~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.|..++.+|+... ...+++.++.+.++|++
T Consensus 977 -----~g~~~~vlr~~Pp-l~it~~~id~~l~~l~~ 1006 (1013)
T PRK06148 977 -----EGPHDNVLKIRPP-LIFSRADADHLLEVLDD 1006 (1013)
T ss_pred -----cCCCCCEEEEeCC-ccCCHHHHHHHHHHHHH
Confidence 0222478998887 65555555555554443
No 350
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.30 E-value=2.2e-10 Score=104.09 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=75.8
Q ss_pred cCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCc
Q 020548 48 DISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGAD 115 (324)
Q Consensus 48 ~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d 115 (324)
+.+|++++++.++. +++++|++++.....|...| +++|.++|++||+++|+||++.++... -.....|
T Consensus 184 ~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PD 263 (433)
T PRK00615 184 PYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPD 263 (433)
T ss_pred CCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCC
Confidence 34578899888842 46889999998888898876 559999999999999999999666211 1223578
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+++ ++|.+++ |.++ |++++++++++.+..
T Consensus 264 i~~--~gK~lgg-G~p~-~av~~~~~i~~~~~~ 292 (433)
T PRK00615 264 ITV--YGKILGG-GLPA-AAVVAHKSIMDHLAP 292 (433)
T ss_pred eEE--EcccccC-Ccce-eeeeecHHHHhhhcC
Confidence 776 8999976 5775 999999999888753
No 351
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.29 E-value=8.5e-11 Score=107.31 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred HHHHHHhhh--cCCceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~ 118 (324)
++++++.+. .+++++|++++.+...|.+. .+++|.++|++||+++|+||++.++... -.....|+++
T Consensus 212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 291 (443)
T PRK08297 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA 291 (443)
T ss_pred HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE
Confidence 455566663 26799999999888888774 3889999999999999999999777432 1233678887
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHH-hh---hhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMD-LH---QGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 192 (324)
++|.++. +|++.+++ +.+.... .. .... ..++++.. ++..+..++.+ +...++..+..+++.+
T Consensus 292 --~gK~l~~-----~a~l~~~~-i~~~~~~~~~~~~~~~~-T~~gnpl~--~aaa~a~L~~l~~~~l~~~~~~~g~~l~~ 360 (443)
T PRK08297 292 --FGKKTQV-----CGIMAGRR-VDEVEDNVFAVSSRINS-TWGGNLVD--MVRARRILEVIEEDGLVENAARQGEYLLA 360 (443)
T ss_pred --ecccccc-----cceecchH-HHHhhhhhccCccccCC-CCCccHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8999742 46666553 3222211 10 1111 22222222 22222222222 1344555666666666
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccc
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 272 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~ 272 (324)
.|++...+. |.... ...|.|.++.+++.+......+...+.. .|++ +.|.
T Consensus 361 ~L~~l~~~~--~~~~~------------~vrg~G~~~~i~~~~~~~~~~~~~~l~~---~Gvl-----------~~~~-- 410 (443)
T PRK08297 361 RLEELAAEF--PAVVS------------NVRGRGLMCAFDLPTTADRDEVIRRLWE---EGVL-----------VLPC-- 410 (443)
T ss_pred HHHHHHHHC--CCcce------------eeeccceEEEEEecCHHHHHHHHHHHHH---CCEE-----------EecC--
Confidence 666542111 11000 1125788999999765555667766653 3331 1111
Q ss_pred ccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 273 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|+++. ...++++++.+.+++++.
T Consensus 411 ---------------~~~~lr~~P~-l~~t~~eid~~l~~l~~~ 438 (443)
T PRK08297 411 ---------------GERSIRFRPA-LTVTTEEIDAAIDALRRA 438 (443)
T ss_pred ---------------CCCeEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 1256999888 666666666666555443
No 352
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.29 E-value=4.3e-10 Score=95.94 Aligned_cols=194 Identities=19% Similarity=0.155 Sum_probs=121.6
Q ss_pred hHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEE--ecC-----CCHHHHHHhhhc----CCceEEEEe
Q 020548 3 AISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTF--VDI-----SDHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~--~~~-----~d~~~l~~~l~~----~~~~~v~~~ 70 (324)
|+..++..++ .+.+-|+++-|.|+-|.+.+.. +|..... .+. .|.++|++.+++ -+++++++.
T Consensus 148 ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l-----~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvI 222 (475)
T KOG0258|consen 148 AIRSILSLLIAGKKTGVLIPIPQYPLYSATISL-----LGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVI 222 (475)
T ss_pred HHHHHHHHHhcCCCCceEeecCCCchhHHHHHH-----hCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEE
Confidence 5677777665 4779999999999999988853 3333222 222 278888887732 368899999
Q ss_pred cCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------CCC---C----cEEEeCCccccccC-
Q 020548 71 SISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLG---A----DVVVHSISKFISGG- 128 (324)
Q Consensus 71 ~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~~~---~----d~~~~S~sK~~~~~- 128 (324)
+|.||||++. .+++|.++|.+++++++.||+|..-.+.+. +++ . .+..+|.||.+-+-
T Consensus 223 NPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gEC 302 (475)
T KOG0258|consen 223 NPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGEC 302 (475)
T ss_pred CCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeee
Confidence 9999999996 588999999999999999999844322110 111 1 36678889988664
Q ss_pred CCeeEEEE-E-c-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----cc-------HHHHHHHHHHHHHHHHHHH
Q 020548 129 ADIIAGAV-C-G-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PH-------LGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 129 g~r~~G~i-~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~l~~~L 194 (324)
|.| ||++ + . +++....+.+... ...+.....+........-. .. .+......+.+++.+.+.+
T Consensus 303 G~R-GGYmEv~n~~prv~~qi~Kl~s--i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ 379 (475)
T KOG0258|consen 303 GQR-GGYMESLNRDPRVKQQIKKLAS--IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAF 379 (475)
T ss_pred ccc-CCeeecccCChhHHHHHHHHHh--hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHH
Confidence 445 7998 2 2 3455555554433 11333333333222222110 11 1223344567777788888
Q ss_pred HhCCC-ceeCC
Q 020548 195 KKLGL-KVLYP 204 (324)
Q Consensus 195 ~~~~~-~~~~p 204 (324)
++... .++.|
T Consensus 380 ns~~gi~cn~~ 390 (475)
T KOG0258|consen 380 NSLEGISCNPV 390 (475)
T ss_pred hhcCceeeccC
Confidence 87643 55533
No 353
>PRK06149 hypothetical protein; Provisional
Probab=99.29 E-value=1.3e-10 Score=115.78 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cCCCCcEEEeCCccccccCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGA 129 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~~~~d~~~~S~sK~~~~~g 129 (324)
+++.+|++++.+...|.+.+ ++++.++|++||+++|+||++.+|...- .....|+++ ++|.+|+ |
T Consensus 743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~-G 819 (972)
T PRK06149 743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGN-G 819 (972)
T ss_pred CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccC-C
Confidence 57899999998888898876 8999999999999999999996663211 223578875 8999976 6
Q ss_pred CeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 130 DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
.++ |.+++++++++.+........ ..++++...+ ..+..++.++ ...++..+.-+++.+.|++...+.....
T Consensus 820 ~Pl-~av~~~~~i~~~~~~~~~~~s-T~~gnP~~~a--aala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~-- 893 (972)
T PRK06149 820 HPL-GAVITRREIAEALEAEGYFFS-STGGSPVSCR--IGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIG-- 893 (972)
T ss_pred eee-EEEEEcHHHHhhhccCCcccC-CCCCCHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeE--
Confidence 887 999999998887754211111 2233333333 3332333322 2334445555667777765421111111
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhc
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQN 248 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~ 248 (324)
...|.|.++.+++. .......+.+.+..
T Consensus 894 -------------~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~ 929 (972)
T PRK06149 894 -------------AVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE 929 (972)
T ss_pred -------------EEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh
Confidence 23368999999883 12334566666653
No 354
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.29 E-value=6.7e-11 Score=107.76 Aligned_cols=207 Identities=18% Similarity=0.159 Sum_probs=120.4
Q ss_pred CHHHHHHhhhc--CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC--Cc
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG--AD 115 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~--~d 115 (324)
+++++++.+.. +++.+|++++.+...|.+.+ ++++.++|+++|+++|+||++.++.... .... .|
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD 316 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD 316 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC
Confidence 35567777732 46899999999988898876 8999999999999999999996664311 1222 78
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
+++ ++|.+++. |++++++. ......... .. ..++.+. .++..+..++.+. ...++..+.-+++.+.
T Consensus 317 i~t--~gK~lg~g-----G~~~~~~~-~~~~~~~~~-~~-T~~gnp~--~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~ 384 (464)
T TIGR00699 317 MVT--FSKKFQTA-----GYFFHDPA-FRPNKPYRQ-FN-TWMGDPS--RALILREIIQEIKRKDLLENVAHVGDYLYTG 384 (464)
T ss_pred EEE--ehhhhccC-----Cccccchh-ccCCCCccc-cc-CCCCCHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 866 89999642 44443321 111001111 11 2222222 2222222222221 2334445555666666
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCC--CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEY--GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
|++...+ +|.... +.. |.|.++.+++++......+.+.+.. .|++. .+
T Consensus 385 L~~l~~~--~~~~i~------------~vRg~G~Glm~gie~~~~~~~~~i~~~~~~---~Gvl~-----------~~-- 434 (464)
T TIGR00699 385 LEDLQKK--YPEFIQ------------NLRGKGRGTFIAWDTPDEAKRDKLLKKARN---NGVNI-----------GG-- 434 (464)
T ss_pred HHHHHHh--CCCcee------------eecccCeEEEEEEecCCHHHHHHHHHHHHH---CCcEE-----------ec--
Confidence 6654211 120000 111 5799999999765556677777664 33311 11
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
...+.|||+.. +.-++++++.+.++|++
T Consensus 435 ---------------~g~~~ir~~Pp-l~it~~eid~~~~~l~~ 462 (464)
T TIGR00699 435 ---------------CGVKAIRLRPM-LVFQKHHADIFLEIISK 462 (464)
T ss_pred ---------------CCCCeEEEeCC-CCCCHHHHHHHHHHHHH
Confidence 01367999998 77777777777777654
No 355
>PRK07483 hypothetical protein; Provisional
Probab=99.28 E-value=2.3e-10 Score=104.48 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=98.8
Q ss_pred HHHHHhhh---cCCceEEEEecCCC-CcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISN-PTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~n-ptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
+++++.+. .+++.+|++++.+. ..|...+ ++++.++|++||+++|+||++.++.. .-....+|++
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv 265 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLV 265 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCee
Confidence 56666552 25789999999875 3466643 88999999999999999999977732 1223457888
Q ss_pred EeCCccccccCCC-eeEEEEEcChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFAR 192 (324)
Q Consensus 118 ~~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 192 (324)
+ ++|.+++ |. ++ |.++.++++++.+..... ..+...++.+...+ .++..++.++ ...++..+..+++.+
T Consensus 266 ~--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~a--aa~a~l~~i~~~~l~~~~~~~g~~l~~ 339 (443)
T PRK07483 266 T--IAKGLGA-GYQPI-GAVLASDRIYDAIADGSGFFQHGHTYLGHATACA--AALAVQRVIAEDGLLANVRARGEQLRA 339 (443)
T ss_pred e--ehhhhcc-Ccccc-EEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8 8999977 64 87 888888888887753210 01112223333332 2222232221 344555666666666
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++.-.+..... +..|.|.++.+++.
T Consensus 340 ~L~~l~~~~~~i~---------------~vRG~Glm~gie~~ 366 (443)
T PRK07483 340 RLRERLGQHPHVG---------------DIRGRGLFVGVELV 366 (443)
T ss_pred HHHHHHhcCCCee---------------eEeecccEEEEEEe
Confidence 6665311110011 22368889999884
No 356
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.27 E-value=1.9e-10 Score=99.89 Aligned_cols=139 Identities=27% Similarity=0.274 Sum_probs=103.2
Q ss_pred chHHHHHHHccCCCCEEEEcC-----CCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-----TLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-----p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++.. +.+|+++. +..+.....++ ..|.++..+... ...+++.++ .+++++++=.+-+
T Consensus 94 aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~d~~~-----~aG~~l~EvG~tn~t~~~d~~~AI-ne~ta~llkV~s~ 166 (395)
T COG1921 94 AAVLLTLNALAE-GKEVVVSRGELVEGGAFRVPDIIR-----LAGAKLVEVGTTNRTHLKDYELAI-NENTALLLKVHSS 166 (395)
T ss_pred HHHHHHHhhhcc-CCeEEEEccccccCCCCChhHHHH-----HcCCEEEEecccCcCCHHHHHHHh-ccCCeeEEEEeec
Confidence 356666666665 55666554 36667777773 367777776543 789999999 8888877766555
Q ss_pred CCcccc--cChHHHHHHHHhcCCEEEEcCCCCcCC------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 74 NPTLAV--ANIPELSRLAHDKGVTVVVDNTFSPLV------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 74 nptG~~--~~~~~i~~l~~~~~~~~ivD~~~~~~~------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|- |.. .+.++++++||++|+++++|.+-+... ......|+|+|++|..|.++||. +|+|++++++++.
T Consensus 167 ~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq---aGii~GkKelI~~ 242 (395)
T COG1921 167 NY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ---AGIIVGKKELIEK 242 (395)
T ss_pred cc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc---cceEechHHHHHH
Confidence 53 555 467889999999999999999853321 12234599999999999998876 7999999999998
Q ss_pred HHHhhh
Q 020548 146 MMDLHQ 151 (324)
Q Consensus 146 l~~~~~ 151 (324)
++...-
T Consensus 243 lq~~~l 248 (395)
T COG1921 243 LQSHPL 248 (395)
T ss_pred HHhhhh
Confidence 876543
No 357
>PRK07480 putative aminotransferase; Validated
Probab=99.26 E-value=2.3e-10 Score=104.73 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=98.4
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+.+++.+. .+++.+|++++.+...|...+ +++|+++|++||+++|+||++.+|.. .-....+|+++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 285 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT 285 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee
Confidence 55655442 257899999998888888765 88999999999999999999977632 11223577776
Q ss_pred eCCccccccCC-CeeEEEEEcChhHHHHHHH-hhh-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHH-HHHHHHHHH
Q 020548 119 HSISKFISGGA-DIIAGAVCGPANLVNSMMD-LHQ-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEH-CHRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~ 192 (324)
++|.+++ | .++ |.+++++++++.+.. ... ......+++ +..++..+..++.++ ...++. .+..+++.+
T Consensus 286 --~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~T~~gn--pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~ 359 (456)
T PRK07480 286 --IAKGLTS-GYIPM-GAVGVGDRVAEVLIEEGGEFNHGFTYSGH--PVAAAVALANLRILRDEGIVERVRDDTGPYLQK 359 (456)
T ss_pred --eehhhcc-CCccc-eEEEEcHHHHHHHhcCCCCcccCCCCCcC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8999987 5 476 777778888877732 110 011122233 333333333333322 233444 355666666
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++.. + +|... +..|.|.++.+++.
T Consensus 360 ~l~~l~-~--~~~i~-------------~vrG~Glm~gie~~ 385 (456)
T PRK07480 360 RLRELA-D--HPLVG-------------EVRGVGLVGAIELV 385 (456)
T ss_pred HHHHhh-c--CCCee-------------eEEeecceEEEEEe
Confidence 666531 1 12100 23368999999984
No 358
>PRK07036 hypothetical protein; Provisional
Probab=99.26 E-value=4e-10 Score=103.48 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=101.3
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-----C---ccCCCCcEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-----S---PARLGADVV 117 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-----~---~~~~~~d~~ 117 (324)
+.+++.+. .+++++|++++.+...|...+ ++++.++|++||+++|+||++.+|.. . -....+|++
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDiv 286 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDII 286 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEE
Confidence 34444442 257899999999888898865 88999999999999999999966632 1 123357877
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHh---h--hhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDL---H--QGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ | .++ |.+++++++++.+... . ...+...++++. .++.++..++.+. ...++..+..++
T Consensus 287 t--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl--~~aaa~a~Le~i~~~~l~~~~~~~g~~ 360 (466)
T PRK07036 287 T--FAKGLTS-GYQPL-GAVIISERLLDVISGPNAKGNVFTHGFTYSGHPV--ACAAALKNIEIMEREGLCEHVREVGPY 360 (466)
T ss_pred E--Ecccccc-Ccccc-EEEEEcHHHHHHHhcccCcCcccccCCCCCCCHH--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7 8999976 6 476 8888888888877532 0 001112222333 3333333333332 344556666777
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|++.. + +|.. . +..|.|.++.+++.
T Consensus 361 l~~~L~~l~-~--~~~v-~------------~vrG~Gl~~~ve~~ 389 (466)
T PRK07036 361 FEERLASLR-E--LPLV-G------------DVRGDHLMACVECV 389 (466)
T ss_pred HHHHHHHhc-c--CCCE-E------------EEEeeceEEEEEEc
Confidence 777776541 1 1210 0 23468999999985
No 359
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.26 E-value=2e-09 Score=91.19 Aligned_cols=220 Identities=17% Similarity=0.186 Sum_probs=138.5
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHh-hhcCcccceeEEE-------ecCC----CHHHHHHhhhcCCceEEEEe
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLT-HFFPRACNITTTF-------VDIS----DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-~~~~~~~g~~~~~-------~~~~----d~~~l~~~l~~~~~~~v~~~ 70 (324)
|.+.+.+++++|+|+|+--+.-.+++...-. .-..+ ....-++ ++.. |-|.|++....-++|+++..
T Consensus 118 ANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kk-ISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG 196 (477)
T KOG2467|consen 118 ANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKK-ISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAG 196 (477)
T ss_pred hhhHHHhhhcCCCCeeeeccCCCCCccccccccCCce-eeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEec
Confidence 5677888999999999987754444332210 00011 0111111 1111 77888876545688988865
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---- 140 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---- 140 (324)
.... -...|.++++++|.+.|+++++|-++ +++. .+|+++ +|+|..+.||++-|| | ||.|+-++
T Consensus 197 ~SaY--~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsLRGP--R-g~mIFyRkGvk~ 270 (477)
T KOG2467|consen 197 TSAY--SRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGP--R-GAMIFYRKGVKS 270 (477)
T ss_pred cccc--hhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccccccCC--c-ceeEEEeccCCc
Confidence 4322 35679999999999999999999998 5553 456665 899999999998765 4 68775333
Q ss_pred -----------hHHHHHHHhhhhhhhccCCCCCHHHHHH-HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 141 -----------NLVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 141 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++-++++..-. .+-..|+.....++.+ ++.+. ..+.++.++..+|++.+.+.|.+.|.++..-+.
T Consensus 271 ~~~k~g~~i~ydlE~kINfaVF-P~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGT 349 (477)
T KOG2467|consen 271 IKPKQGKEILYDLEDKINFAVF-PGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGT 349 (477)
T ss_pred CCCCCCCcceechhhhhhhhcc-ccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCc
Confidence 22233332211 1112333333222222 23222 336678888899999999999999997654432
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
. ..++.+.+. ++..++.+++.+.+
T Consensus 350 D------------------nHlvLvDLr~~G~dGarvE~vle~~~I 377 (477)
T KOG2467|consen 350 D------------------NHLVLVDLRPKGVDGARVEKVLELCHI 377 (477)
T ss_pred c------------------ceEEEEeccccCCchHHHHHHHHHhhh
Confidence 1 226677776 56778888888775
No 360
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.25 E-value=2.5e-10 Score=104.62 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++.+|++++.+...|...+ ++++.++|+++|+++|+||++.+|.. .-....+|+++ ++|.+++ |.
T Consensus 224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~g-G~ 300 (459)
T PRK06931 224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGG-GL 300 (459)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccC-Cc
Confidence 35899999998888887753 88999999999999999999977731 12234578888 8999987 68
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |.++.++++ +.+..... .. ..++++...++ ++..++.+. ...++..+..+++.+.|++...+.....
T Consensus 301 Pi-~av~~~~~~-~~~~~~~~-~~-T~~gnpla~aa--ala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~--- 371 (459)
T PRK06931 301 PL-AVLGIKKEF-DAWQPGGH-TG-TFRGNQLAMAT--GLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIG--- 371 (459)
T ss_pred ce-eeeeeHHHH-hhccCCCC-CC-CCCCCHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeE---
Confidence 97 777776653 44422211 11 22333333332 222222221 2334445555666666655311110111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|.++.+++.
T Consensus 372 ------------~vrG~Glm~giel~ 385 (459)
T PRK06931 372 ------------NVRGRGLMIGIEIV 385 (459)
T ss_pred ------------eEecCceEEEEEEc
Confidence 23368999999984
No 361
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.25 E-value=3.3e-10 Score=103.98 Aligned_cols=161 Identities=13% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
++++++.+. .+++.+|++++ ++...|...+ ++++.++|+++|+++|+||++.++.. .......|++
T Consensus 201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv 280 (466)
T PRK07030 201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFL 280 (466)
T ss_pred HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEE
Confidence 456677773 25789999998 5777787753 78999999999999999999977642 1233467888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHhh----h-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----Q-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ | .++ |.++.++++++.+.... . ......++.+.. +++++..++.++ ...++..+.-++
T Consensus 281 ~--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla--~aaa~a~L~~i~~~~l~~~~~~~G~~ 354 (466)
T PRK07030 281 C--LSKALTG-GYLPL-AAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLA--CAAALATLDIFEQDNVIENNRALARR 354 (466)
T ss_pred e--eehhccC-Ccccc-eEEEecHHHHHHHhcccccccccccCCCCCCCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 7999987 6 487 88888989888775310 0 011122233333 333332333322 344555666777
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|++.. + +|.+. +..|.|.++.+++.
T Consensus 355 l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~~ 383 (466)
T PRK07030 355 MAEATAHLA-D--HPHVA-------------EVRQTGMILAIEMV 383 (466)
T ss_pred HHHHHHHHh-c--CCCEE-------------EeEeceeEEEEEec
Confidence 777776642 1 12110 23368999999884
No 362
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.24 E-value=2.8e-10 Score=104.44 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=71.0
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
++.+++.+. .+++.+|++++ .++..|.+.+ ++++.++|+++|+++|+||++.+|... -.....|++
T Consensus 223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv 302 (472)
T PRK08742 223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLL 302 (472)
T ss_pred HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEE
Confidence 466666663 25789999998 5777887643 789999999999999999999776421 123357888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~ 147 (324)
+ ++|.+++ | .++ |.++.++++++.+.
T Consensus 303 ~--~gKgl~g-G~~Pl-aav~~~~ei~~~~~ 329 (472)
T PRK08742 303 C--LSKGLTG-GFLPL-SAVLATQQLYDAFL 329 (472)
T ss_pred E--EcccccC-CCCCc-ceeeccHHHHHHhh
Confidence 8 8999977 5 477 88888888887764
No 363
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=99.23 E-value=4e-09 Score=87.58 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=131.5
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccc----eeEEEecCC----CHHHHHHhhhcCCce-EEEEec-CCCCcccccC---
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACN----ITTTFVDIS----DHEMVNSAIVQGRTK-VLYFES-ISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g----~~~~~~~~~----d~~~l~~~l~~~~~~-~v~~~~-~~nptG~~~~--- 81 (324)
...|.+++|+|..+..++.. .| ....+++.. |++.+...++..... ++++.. .+||||.-+.
T Consensus 125 ~~~VY~SnPTW~nH~~if~~-----aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQ 199 (410)
T KOG1412|consen 125 KNTVYVSNPTWENHHAIFEK-----AGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQ 199 (410)
T ss_pred cceeEecCCchhHHHHHHHH-----cCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHH
Confidence 56799999999999999953 44 234455543 788888888433333 444444 5999998764
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCCccC-----------CCC-cEEEeCCccccccCCCeeEEEE---EcChhHHHHH
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-----------LGA-DVVVHSISKFISGGADIIAGAV---CGPANLVNSM 146 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~-----------~~~-d~~~~S~sK~~~~~g~r~~G~i---~~~~~~~~~l 146 (324)
..+|++..++.+...+.|-+|.+|.....+ .|. -+++.||+|.||..+.|+ |.+ +.++..+..+
T Consensus 200 W~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRv-Gnltvv~~n~a~i~~v 278 (410)
T KOG1412|consen 200 WKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERV-GNLTVVVNNPAVIAGV 278 (410)
T ss_pred HHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccc-cceEEEecChhHHHHH
Confidence 567777788899999999999777532211 132 589999999999999997 755 4555555555
Q ss_pred HHhhhhhhhccCCCCCHHHHHH---HhcCcc-------cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE---LSERIP-------HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
.+-..-..+...+.|.+..+-. .+...+ .+...-.|+.+.|..|++.|..++. |+ .+.++.
T Consensus 279 ~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~T----PG-----tWDHI~ 349 (410)
T KOG1412|consen 279 KSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKT----PG-----TWDHIT 349 (410)
T ss_pred HHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC-----cHHHHH
Confidence 4332211123333444443333 232221 1233445567778888888877653 33 222222
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+ ..++|++.=-.+...+.+.+....
T Consensus 350 ~-------QiGMFSyTGLtp~qV~~li~~h~v 374 (410)
T KOG1412|consen 350 Q-------QIGMFSYTGLTPAQVDHLIENHKV 374 (410)
T ss_pred h-------hccceeecCCCHHHHHHHHHhceE
Confidence 2 345888874455556666666443
No 364
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.19 E-value=6.8e-09 Score=91.30 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=154.9
Q ss_pred hHHHHHHHccCCCCEEE--EcCCCchhHHHHHhhhcCcccceeEEEec---------CCCHHHHHHhhhcCCceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVV--AARTLYGGTHALLTHFFPRACNITTTFVD---------ISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl--~~~p~y~~~~~~~~~~~~~~~g~~~~~~~---------~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++.++...++++||+++ +....|.. . +...+.+ +| .+..+. ..+++++ .+ +++.+.|++++
T Consensus 80 ~~ea~~~Nll~~g~~~~~~~~tG~fg~-r--~~~ea~~-~g-~v~~~~~~~~~~~~~~p~~~~~--~~-~~d~~~v~~t~ 151 (364)
T PRK12462 80 QFSMIPMNFSRPGAAAPEYVTTGYWSR-K--AIGEASR-VA-AMRVVWDGAASGYRTLPSLAEL--DW-DARAPFRHYVS 151 (364)
T ss_pred HHHHHHHHcCCCCCcEEEEEeCCHHHH-H--HHHHHHh-cC-CceEecCcCCCCCCcCCCHHHh--cc-CCCCcEEEEcc
Confidence 56778888899999665 44343332 2 1222223 44 232222 1244554 22 45678888888
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
-...+|...+ ++.+.+++++|+|.+ +.+.-.|.++ ..|++..+..|.+|++| .++++.++++++......
T Consensus 152 NETstGv~~~-----~~~~~~~~llvvD~s-S~~~s~pid~~~~dvi~agsQKnlgP~G---ltvvivs~~al~~~~~~~ 222 (364)
T PRK12462 152 NETVEGLQFP-----DAAGLPDSPLIADMS-SDFMSRPFDVEAYGMVYAHAQKNLGPAG---VTVAIIRRALLERVPDTL 222 (364)
T ss_pred CCCCceEecC-----cccccCCCeEEEEcC-chhhCCCCChHHccEEEeeccccCCCCc---eEEEEECHHHHhhccccC
Confidence 8888888875 233346899999998 5555555555 35999999999999776 467777887776654321
Q ss_pred hhh-------hh-ccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHH
Q 020548 151 QGA-------LM-LLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHEL 214 (324)
Q Consensus 151 ~~~-------~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~ 214 (324)
..+ .. ...++|.....+.+...+ ..++.+.+++.+.++.+++++.+.+ +-.. +.-+..
T Consensus 223 p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~-~~~~~~----- 296 (364)
T PRK12462 223 PPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDC-HAHRAA----- 296 (364)
T ss_pred CchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCChhh-----
Confidence 100 00 112344433333322211 2566778889999999999999986 4211 111111
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
.+-..+.|++.+.+...+|++..+. .|+.. +.|.. .-+.+|+
T Consensus 297 ---------RS~mnv~f~~~~~~l~~~f~~~a~~---~gl~~--lkGhr------------------------~vgg~Ra 338 (364)
T PRK12462 297 ---------RSTMNVAFRFRQPRLDTLFKEQSTE---AGFCG--LSGHR------------------------SIGGIRA 338 (364)
T ss_pred ---------cCcceEEEEcCCHHHHHHHHHHHHH---CCCcc--ccCCc------------------------ccCceEE
Confidence 1233577888877778889888885 44311 11110 1245999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
|+= .--+.+.++.|.+.++.+.++
T Consensus 339 s~y-na~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 339 SLY-NAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 995 666778889999999888654
No 365
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.19 E-value=1.4e-10 Score=102.46 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=88.1
Q ss_pred CCEEEEcCCCchhHHHHHh----------hhcCcccceeEEEecCCCHHH----------HHH---hhhcCCceEEEEec
Q 020548 15 GGHVVAARTLYGGTHALLT----------HFFPRACNITTTFVDISDHEM----------VNS---AIVQGRTKVLYFES 71 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~----------~~~~~~~g~~~~~~~~~d~~~----------l~~---~l~~~~~~~v~~~~ 71 (324)
..+|+.....|++...... .+.+ ....+..+|.+++.. +++ ....+++.+|++++
T Consensus 108 r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEP 185 (339)
T PF00202_consen 108 RRKILAFEGSYHGRTLGALSLTGNPPYRKGFGP--LYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEP 185 (339)
T ss_dssp TTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCS--SSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEES
T ss_pred CceEEEeeeeeeccCcccccccCCccccccccc--cccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEec
Confidence 3689999999986432211 1111 112345566666555 222 22256789999999
Q ss_pred CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
.+...|...+ +++|.++|+++|+++|+||+++++.. ......+|+++ ++|.+++ |.++ |.++.++
T Consensus 186 i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~g-G~p~-sav~~~~ 261 (339)
T PF00202_consen 186 IQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLGG-GLPI-SAVLGSE 261 (339)
T ss_dssp SBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGGT-TSSE-EEEEEEH
T ss_pred cccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccc--cccchhh-hhhc-ccccccc
Confidence 8887787642 78999999999999999999977632 12234689998 6799988 5997 9999998
Q ss_pred hHHHHHHHh
Q 020548 141 NLVNSMMDL 149 (324)
Q Consensus 141 ~~~~~l~~~ 149 (324)
++.+.+...
T Consensus 262 ~i~~~~~~~ 270 (339)
T PF00202_consen 262 EIMEAFQPG 270 (339)
T ss_dssp HHHTTSCTT
T ss_pred hhhcccccc
Confidence 888777443
No 366
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.16 E-value=8.7e-10 Score=97.98 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=110.1
Q ss_pred HHHHHHhhhc---CCceEEEEecCCCC-cccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 52 HEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~~---~~~~~v~~~~~~np-tG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
.++|++.+.. +++.++++++...- .|...+ ++++.++|++||+++|+||+-.+|... -.....|+
T Consensus 200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi 279 (449)
T COG0161 200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDI 279 (449)
T ss_pred HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCe
Confidence 4566666643 57899999996665 777754 889999999999999999998777521 22335788
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccC--CCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG--PTMNPKVAFELSERIPHLG--LRMKEHCHRALIFAR 192 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 192 (324)
++ ++|.+++.-.++ |.++..+++.+.+..... .....| .+-.+.+++.++..++-++ ..+++..+...++.+
T Consensus 280 ~~--~aKGLT~GY~Pl-~a~l~~~~I~~~~~~~~~-~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~ 355 (449)
T COG0161 280 LC--LAKGLTGGYLPL-SAVLTSDRIYEAFSDGDA-GAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQA 355 (449)
T ss_pred ee--ecccccccchhh-HhHhhhHHHHHHHhcccC-CeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88 999999877787 777777788888865411 111223 2344556666555554433 455666777888888
Q ss_pred HHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++. ... |... +..+.|.+..+++.
T Consensus 356 ~L~~~l~~~---p~Vg-------------dVR~~Gli~~iElv 382 (449)
T COG0161 356 GLQAALADH---PLVG-------------DVRGLGLIGAIELV 382 (449)
T ss_pred HHHHhcccC---CcEE-------------EeeccceEEEEEEe
Confidence 88873 211 1111 23367888889887
No 367
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.16 E-value=4.4e-09 Score=90.61 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=93.6
Q ss_pred EEEEcCCCchhHHHHHhh--hcCcccce-------eEEEecCCCHHHHHHhhhcCC--ceEEEEecCCCCcccccC----
Q 020548 17 HVVAARTLYGGTHALLTH--FFPRACNI-------TTTFVDISDHEMVNSAIVQGR--TKVLYFESISNPTLAVAN---- 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~--~~~~~~g~-------~~~~~~~~d~~~l~~~l~~~~--~~~v~~~~~~nptG~~~~---- 81 (324)
++|....+|++-...+-. ..+. ++. .+.....+|..++++.++.++ +.+|++++.+...|.++.
T Consensus 150 ~~Iaf~nsyHG~tlgals~~~~s~-y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peF 228 (433)
T KOG1401|consen 150 KFIAFENSYHGRTLGALSVTGNSK-YGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEF 228 (433)
T ss_pred eEEEEecCcCCcchhHHHhhcccc-cCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHH
Confidence 488888888764322211 1111 232 123333458999999996544 799999999998888853
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+..|+++|+++|+++|.||++.++.... .....|+.+ +.|.+++ |+++ |....++++++.+.+..+
T Consensus 229 l~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~g-GlPi-gA~~v~~kV~~~i~~~~~ 301 (433)
T KOG1401|consen 229 LIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITT--VAKPLGG-GLPI-GATGVRDKVAEMISPGDH 301 (433)
T ss_pred HHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCccee--ehhhccC-Ccee-EEEeehHHHHhhcCCCCc
Confidence 6799999999999999999997765322 222456665 9999987 7997 999999999998876543
No 368
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=99.15 E-value=1.3e-10 Score=98.26 Aligned_cols=249 Identities=14% Similarity=0.121 Sum_probs=126.5
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCE
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT 95 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~ 95 (324)
-+|+...|.|+.|.....-+.. ....+- . |.......- +...-+=++++||||.|.+-. . +.+.-+..
T Consensus 97 ~~VVa~aPYY~~Y~~qt~~f~s----~~y~w~-G-da~~~~~~~-~~~~~IElVTSPNNPDG~lr~--~---V~~g~~~k 164 (363)
T PF04864_consen 97 ASVVAAAPYYSSYPEQTDFFDS----RLYKWA-G-DASNFKNSD-NPSPYIELVTSPNNPDGQLRE--A---VLNGSSGK 164 (363)
T ss_dssp EEEEE-SS--CHHHHHCCCT-B----TTEEEE-E-ECCCGTT-S--CCGEEEEEESS-TTT-----------SSTTTEEE
T ss_pred ceeEecCCCccchHHHHHhccc----cCcccc-c-cHHhhccCC-CCCCeEEEEeCCCCCcccccc--h---hcCCCCcc
Confidence 4799999999999876632211 112221 1 211111110 234455677899999998742 1 23455677
Q ss_pred EEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEE-EcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC
Q 020548 96 VVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 172 (324)
Q Consensus 96 ~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (324)
+|-|-+|. ++..-+...+-|+.++|+||.=|-.|.|+ ||. +.++++.+++..+.. ..+.+.+.-+|+-++.++..
T Consensus 165 ~I~D~AYYWPhyTpI~~~aD~DiMLFT~SK~TGHAGSR~-GWAlVKD~~Va~kM~~y~~-lnTiGvS~dsQLRa~kiLk~ 242 (363)
T PF04864_consen 165 VIHDLAYYWPHYTPITAPADHDIMLFTLSKLTGHAGSRF-GWALVKDEEVAKKMTKYME-LNTIGVSRDSQLRALKILKV 242 (363)
T ss_dssp EEEE-TT-STTTS---S-B--SEEEEEHHHHCS-GGG-E-EEEEES-HHHHHHHHHHHH-HHCSS--HHHHHHHHHHHHH
T ss_pred eeeeeeeecccccccCCCCCCceEEEEEecccCcccccc-ceeeecCHHHHHHHHHHHH-HhcccCcHHHHHHHHHHHHH
Confidence 89999983 33332334467999999999998899998 888 667788898888765 22222233445544443321
Q ss_pred ----cc------c-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHH
Q 020548 173 ----IP------H-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKA 239 (324)
Q Consensus 173 ----~~------~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~ 239 (324)
.. . ++--.+...++-++|.+.+.+.. .+..|.++. .+=.+.++... ....+.|++.+. .+++
T Consensus 243 v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~-rFSLq~~~~-~yC~ff~~~~~---psPafAWlkCe~eed~DC 317 (363)
T PF04864_consen 243 VLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK-RFSLQKFSP-QYCNFFKRVRE---PSPAFAWLKCEREEDEDC 317 (363)
T ss_dssp HHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS-SEEE---SC-EEETTTTCEEE------SEEEEEESSCGGSSH
T ss_pred HHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC-ceecCcCCc-hhccccccccC---CCCCeEEEecCCcccccH
Confidence 11 1 12222334555666666666543 333333211 00011112111 256789999983 3578
Q ss_pred HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 240 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 240 ~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
..++...++..|.|. .+|.+..++|+|+- +.++..+.|.+-|..
T Consensus 318 ~~~l~~~~I~tr~G~-----------------------------~fga~~ryVRlSml---~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 318 YAVLREAKIITRSGV-----------------------------LFGADSRYVRLSML---KRDDDFDQLLERLSK 361 (363)
T ss_dssp HHHHHCTTEEEEEGG-----------------------------GGTS-TTEEEEESS---S-HHHHHHHHHHHHC
T ss_pred HHHHHhCCcccCCCC-----------------------------ccCCCCCeEEEecc---CCHHHHHHHHHHHHh
Confidence 889888887665554 13556799999998 566555665555443
No 369
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.14 E-value=4.4e-09 Score=91.28 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=90.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-cChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~i~~l~ 89 (324)
+.|++++..|+...... ...|.+++.++.+ |+++|++++ .++++++.+++|+. .|.. .++.+|+++.
T Consensus 158 ~~~LIP~SAHGTNPASA-----am~G~~VV~V~~~~~G~VDlddLk~k~-~~~~AalMiTnPsT-~GvFE~~I~ei~~iv 230 (496)
T COG1003 158 NICLIPDSAHGTNPASA-----AMAGFKVVVVKCDENGNVDLDDLRAKA-EDNLAALMITNPST-LGVFEEDIREICEIV 230 (496)
T ss_pred cEEEeeccccCCChhhH-----hhcCceEEEEecCCCCCccHHHHHHHh-ccceeEEEeccCcc-cccchhhHHHHHHHH
Confidence 68999999999888877 3478898888775 899999999 89999999999955 5666 5799999999
Q ss_pred HhcCCEEEEcCCC--CcC-CCCccCCCCcEEEeCCccccccC
Q 020548 90 HDKGVTVVVDNTF--SPL-VLSPARLGADVVVHSISKFISGG 128 (324)
Q Consensus 90 ~~~~~~~ivD~~~--~~~-~~~~~~~~~d~~~~S~sK~~~~~ 128 (324)
|++|..+..|.+- +-+ ...|.++|.|++=.-+||+|+.|
T Consensus 231 H~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHKTF~iP 272 (496)
T COG1003 231 HEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHKTFCIP 272 (496)
T ss_pred HHcCCEEEecCcchhhhhccccccccccceEEeecccccccC
Confidence 9999999999986 222 25788999999999999999765
No 370
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.11 E-value=1.4e-09 Score=102.54 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=94.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~-~~~~ 65 (324)
+|+..++++++++||.|++..++|-+....+ .+.|+.++++.+. +.+.+++++++ ++.+
T Consensus 222 ~~n~av~~a~~~~Gd~VLvdRN~HKSv~haL-----ilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak 296 (714)
T PRK15400 222 TANKIVGMYSAPAGSTVLIDRNCHKSLTHLM-----MMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNAT 296 (714)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHH-----HHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCcccc
Confidence 3677888899999999999999999988777 3468888887543 37888888843 2333
Q ss_pred ---EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCc-------cCCCC---c--EEEeCCccccccCC
Q 020548 66 ---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSP-------ARLGA---D--VVVHSISKFISGGA 129 (324)
Q Consensus 66 ---~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~-------~~~~~---d--~~~~S~sK~~~~~g 129 (324)
.+++++| +-.|.+.++++|+++|+.++ +++||||++ +.+.+ +..++ | +++.|.||.+++
T Consensus 297 ~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~a-- 371 (714)
T PRK15400 297 WPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-- 371 (714)
T ss_pred CccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccc--
Confidence 7888888 56899999999999999887 689999943 32222 22345 4 999999999854
Q ss_pred CeeEEEE
Q 020548 130 DIIAGAV 136 (324)
Q Consensus 130 ~r~~G~i 136 (324)
...++++
T Consensus 372 lTQaS~L 378 (714)
T PRK15400 372 FSQASMI 378 (714)
T ss_pred hhHHhHH
Confidence 3333454
No 371
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.10 E-value=1.6e-10 Score=99.58 Aligned_cols=141 Identities=26% Similarity=0.307 Sum_probs=46.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCc---hhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLY---GGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y---~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++ +|.+|+++...- ++.+.+- ..... .|.+++.+-.. .+++.++++ +++|++++-.+++|.
T Consensus 73 AAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip-~vm~~-sGa~lvEVGttN~t~~~Dye~AI-~e~Ta~ll~Vh~Sn~ 148 (367)
T PF03841_consen 73 AAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIP-DVMRQ-SGARLVEVGTTNRTHLSDYEKAI-TENTAALLKVHTSNF 148 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-cccccccccccccccccccccc-ccccc-ccccccccccccccccccccccc-ccccccccccccccc
Confidence 46666666665 578899888433 3322211 11112 57766666443 588999999 899999887777776
Q ss_pred c--ccc--cChHHHHHHHHhcCCEEEEcCCCCcCC-------------CCccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 76 T--LAV--ANIPELSRLAHDKGVTVVVDNTFSPLV-------------LSPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 76 t--G~~--~~~~~i~~l~~~~~~~~ivD~~~~~~~-------------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
. |.. .+++++++++++|++++++|..-+.+. ......|+|++++|..|.+|||. +|++++
T Consensus 149 ~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ---aGiI~G 225 (367)
T PF03841_consen 149 RIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ---AGIIVG 225 (367)
T ss_dssp ------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S----EEEEE
T ss_pred ccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC---eEEEEe
Confidence 4 434 579999999999999999998742111 11244599999999999999887 799999
Q ss_pred ChhHHHHHHHh
Q 020548 139 PANLVNSMMDL 149 (324)
Q Consensus 139 ~~~~~~~l~~~ 149 (324)
++++++.+++.
T Consensus 226 kk~lI~~lk~~ 236 (367)
T PF03841_consen 226 KKELIEKLKKH 236 (367)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHhhC
Confidence 99999998754
No 372
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=99.10 E-value=5.2e-09 Score=89.62 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=102.0
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCee
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
+.+++.+.++.+...|.+.+ +++..++|+++|.++|.||++++|...- ...++.--+-|++|.+|. |.++
T Consensus 211 ~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn-G~Pl 289 (442)
T KOG1404|consen 211 ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN-GFPL 289 (442)
T ss_pred CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC-CCcc
Confidence 46788999999999999863 8899999999999999999997775321 222444445569999977 7997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
|.++..+++.+-+.+...+..++.|+. .+.++..+....-.-+...++..+-..++.+.|.+...+...-+
T Consensus 290 -~AVvtt~EIa~v~~~~~~~fnTyggnP-~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIG------- 360 (442)
T KOG1404|consen 290 -GAVVTTPEIADVLNQKSSHFNTYGGNP-VACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIG------- 360 (442)
T ss_pred -eeeecCHHHHHHHHhccccccccCCCc-hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCcee-------
Confidence 888888889988887663333344443 33333333222222233344445566667777766543211111
Q ss_pred HHHHHHhccCCCcceEEEEEeC
Q 020548 213 ELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|-++.+++-
T Consensus 361 --------dVRG~GLm~GvE~V 374 (442)
T KOG1404|consen 361 --------DVRGRGLMLGVELV 374 (442)
T ss_pred --------ecccceeEEEEEEe
Confidence 34478989998875
No 373
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.09 E-value=1.6e-08 Score=97.70 Aligned_cols=174 Identities=14% Similarity=0.029 Sum_probs=119.0
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCC
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 94 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~ 94 (324)
..+|+++...|+.+...++..+.. .|++++. +++++.+ ++++..|++.+|+ -.|.+.|+++|.+++|+.|+
T Consensus 168 ~~~~~v~~~~hP~~~~v~~t~~~~-~g~~i~~------~~~~~~~-~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~ga 238 (954)
T PRK12566 168 SNRFFVDEHCHPQTLSVLRTRAEG-FGFELVV------DAVDNLA-AHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQA 238 (954)
T ss_pred CCEEEECCCCCHHHHHHHHHhhhc-CCcEEEE------cchhhcC-CCCEEEEEEECCC-CceEEccHHHHHHHHHHcCC
Confidence 568999999999999999877766 7888765 3344455 5679999999995 58999999999999999999
Q ss_pred EEEEcCCC---CcCCCCccCCCCcEEEeCCc-----cccccCCCeeEEEEEcChhHHHHHHHhhhh--------------
Q 020548 95 TVVVDNTF---SPLVLSPARLGADVVVHSIS-----KFISGGADIIAGAVCGPANLVNSMMDLHQG-------------- 152 (324)
Q Consensus 95 ~~ivD~~~---~~~~~~~~~~~~d~~~~S~s-----K~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-------------- 152 (324)
+++ +.+- ..+...|.++|+|+++++.. =.||||. +|++..++++.+.+-...-|
T Consensus 239 l~~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~ 314 (954)
T PRK12566 239 LAC-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPH---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMA 314 (954)
T ss_pred EEE-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCC---eeeeeehHHHHhhCCCCccceeecCCCCeeeehh
Confidence 866 3332 33456788999999998543 3455555 69999888877766321111
Q ss_pred -----------hhhccCCCCCHHHHH-----HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 153 -----------ALMLLGPTMNPKVAF-----ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 153 -----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
-++++-++...+.+. +...+.+.+.+.-++...++.++.+.|++.|+++
T Consensus 315 LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~ 379 (954)
T PRK12566 315 LQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKR 379 (954)
T ss_pred hhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222222211111 1222344455555667788899999999987754
No 374
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.08 E-value=2.9e-08 Score=90.35 Aligned_cols=193 Identities=18% Similarity=0.170 Sum_probs=124.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----------CHHHHHHhhhc-CCc-eEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----------DHEMVNSAIVQ-GRT-KVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----------d~~~l~~~l~~-~~~-~~v~ 68 (324)
+|+..++++++++||.|+++.++|.+....+ ...|...+++... +.+.+++++.+ +.. |+++
T Consensus 97 ~ank~vi~a~~~~GD~VLvdRN~HKSi~~gl-----ilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~v 171 (557)
T COG1982 97 TANKAVINAVLTPGDKVLVDRNCHKSIHHGL-----ILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAV 171 (557)
T ss_pred HHHHHHHHhhcCCCCEEEecCCccHHHHHHH-----HHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEE
Confidence 4678889999999999999999999988775 2367777776542 67888887633 344 7888
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh-
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPA- 140 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~- 140 (324)
+++|+ -.|.+.++++|+++++++++++.+|++. ..+... ..+.++|+++.|.||.+++ ...+.++-.+.
T Consensus 172 itnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~a--lSQaS~iHv~~~ 248 (557)
T COG1982 172 ITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAA--LSQASMIHVKDG 248 (557)
T ss_pred EecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhh--hhhhHHHhhCCC
Confidence 88885 4799999999999999999999999997 333221 1234899999999999854 33335553332
Q ss_pred --hHHHHHHHhhhhhhhccCCCCCHHH-----HHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCC
Q 020548 141 --NLVNSMMDLHQGALMLLGPTMNPKV-----AFELSERI---PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPG 205 (324)
Q Consensus 141 --~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~ 205 (324)
--.+++..... ...+++|+... ++....+. ...++.+.+..+.++.+.+..++.++ .+..|.
T Consensus 249 ~~~~~~r~nea~~---~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~ 321 (557)
T COG1982 249 RAVNHERFNEALM---MHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPE 321 (557)
T ss_pred ccCCHHHHHHHHH---HHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccc
Confidence 11233333222 12333333221 11111111 11233355556777777777777763 444444
No 375
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.06 E-value=9.9e-09 Score=99.25 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=70.8
Q ss_pred HHHHHhhh-------cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCC
Q 020548 53 EMVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLG 113 (324)
Q Consensus 53 ~~l~~~l~-------~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~ 113 (324)
+.+++.+. .+++.+|++++. +.-.|.+.+ +++++++|++||+++|.||++.+|.. .-....
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 45666663 146899999984 777788753 78999999999999999999977742 122335
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~ 147 (324)
.|+++ ++|.+++ | .++ |.++.++++++.+.
T Consensus 647 PDIi~--~gKgLtg-G~~Pl-aa~l~~~~I~~~f~ 677 (817)
T PLN02974 647 PDIAC--YAKLLTG-GLVPL-AATLATEEVFEAFR 677 (817)
T ss_pred CCEEe--ecccccC-CCCcc-EEEEEcHHHHHhhc
Confidence 78888 9999987 6 687 88888888888875
No 376
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.05 E-value=1e-08 Score=96.84 Aligned_cols=183 Identities=11% Similarity=0.103 Sum_probs=114.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------C-----HHHHHHhhhc-C---
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------D-----HEMVNSAIVQ-G--- 62 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d-----~~~l~~~l~~-~--- 62 (324)
+|+..++++.+++||.|++..++|-+....+ .+.|+.++++.+. + .+.+++++++ +
T Consensus 222 ~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aL-----ilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~ 296 (713)
T PRK15399 222 TSNKIVGMYAAPAGSTLLIDRNCHKSLAHLL-----MMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQ 296 (713)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHH-----HHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcC
Confidence 3677888899999999999999999988777 3478888887643 2 3888888843 2
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEE-EEcCCCCc-CCCCc-------cCC--CCcEE---EeCCccccccC
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTV-VVDNTFSP-LVLSP-------ARL--GADVV---VHSISKFISGG 128 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~-ivD~~~~~-~~~~~-------~~~--~~d~~---~~S~sK~~~~~ 128 (324)
+++++++++| +..|.+.++++|++.| |+.+ ++||||++ +.+.| +.. ++|.+ +.|.||.+++
T Consensus 297 ~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a- 371 (713)
T PRK15399 297 WPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAA- 371 (713)
T ss_pred CceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccc-
Confidence 2368888988 5689999999999999 5666 69999943 33322 112 46766 9999999854
Q ss_pred CCeeEEEEEcChhHH-HHHHHhhhhhhhccCCCCCHHHHHHHhcC---cc--cHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 129 ADIIAGAVCGPANLV-NSMMDLHQGALMLLGPTMNPKVAFELSER---IP--HLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 129 g~r~~G~i~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
...++++-.+..+- +.++.... ...+++|+-...+.+-.. .. .=....++..+.+..+++.+.+..
T Consensus 372 -lTQaS~iHvk~~vd~~~~n~a~~---m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~ 443 (713)
T PRK15399 372 -FSQASLIHIKGEYDEETFNEAFM---MHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLR 443 (713)
T ss_pred -cchheeeeecCCCCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 44346663332221 33333222 133444443221111000 11 112334555666666777776643
No 377
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.00 E-value=1.3e-08 Score=92.95 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=70.1
Q ss_pred ecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEE
Q 020548 47 VDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVV 118 (324)
Q Consensus 47 ~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~ 118 (324)
++..|++++++.+.. +++++|++++.....+....+++|.++|++||+++|+||++.++.... ....+|+++
T Consensus 169 ~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t 248 (431)
T PRK06209 169 FRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSC 248 (431)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceee
Confidence 344589999998832 468899998865543333458999999999999999999986653221 122456644
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
++|.+++ |.++ |.+++++++++.
T Consensus 249 --~gK~lgg-G~p~-~av~~~~~i~~~ 271 (431)
T PRK06209 249 --FGKALGN-GFAV-SALAGKREYMEL 271 (431)
T ss_pred --ehhhhcC-Cccc-EEEEEHHHHHhh
Confidence 8999987 6775 999998888775
No 378
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.2e-08 Score=83.57 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=97.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCC-------------ceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGR-------------TKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~-------------~~~v~ 68 (324)
+++..++.++++.||.|.+..-...+....++. ..-.+.+...+|.+++++.+ .++ -+.++
T Consensus 165 ~ti~S~ipafsKrGDIi~~de~~nfaIq~Glql-----SRS~i~~Fkhndm~~lerll-~E~~~~~~K~~k~~~~Rrfiv 238 (467)
T KOG1358|consen 165 STIESAIPAFSKRGDIIFVDEAVNFAIQKGLQL-----SRSTISYFKHNDMEDLERLL-PEQEDEDQKNPKKALTRRFIV 238 (467)
T ss_pred chhhhcchhhhccCcEEEEehhhhHHHHHHHhh-----hhheeEEecCCCHHHHHHhc-cCcchhhhhccccccceEEEE
Confidence 467788899999999999999888777776642 23445666677888888876 322 24677
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-C---Ccc-----C-CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L---SPA-----R-LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~---~~~-----~-~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++....++|.+.|+.+|+++..+|...+|+||.+ .+.. . ... . -..|++++|+.-.++.. ||+.+
T Consensus 239 ~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~----GgFc~ 314 (467)
T KOG1358|consen 239 VEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG----GGFCA 314 (467)
T ss_pred EEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc----Cceee
Confidence 7888888999999999999999999999999998 2321 1 111 1 15799999999998775 58888
Q ss_pred cCh
Q 020548 138 GPA 140 (324)
Q Consensus 138 ~~~ 140 (324)
++.
T Consensus 315 G~~ 317 (467)
T KOG1358|consen 315 GKS 317 (467)
T ss_pred cce
Confidence 854
No 379
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=98.91 E-value=8.8e-08 Score=84.06 Aligned_cols=249 Identities=13% Similarity=0.117 Sum_probs=151.6
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+++++...+..+.... .. ++++++.++.+ |+..+.+.+ +++|.+++.+.|+.|+|...|+++|.++.-
T Consensus 172 ~iv~~~~v~~a~eK~a----~y-f~v~l~~V~~~~~~~~~D~~k~~~~i-~eNti~lv~~~~~~p~G~~e~ve~l~~l~~ 245 (491)
T KOG1383|consen 172 NIVTPQNVHAAFEKAA----RY-FEVELREVPLDEGDYRVDPGKVVRMI-DENTIMLVGSLPNFPTGEIEDVEKLADLLL 245 (491)
T ss_pred cccchHHHHHHHHHHH----hh-EEEEEEeeeccccceEecHHHHHHHh-ccceEEEEEEcCCCCccchhhHHHHHHHHH
Confidence 3555555444444433 33 78888887765 899999999 999999999999999999999999999999
Q ss_pred h-cCCEEEEcCCCCcCCCC-------ccCC---CCcEEEeCCccccccCCCeeEEEE-EcChhHH-HHHHH---hhhh--
Q 020548 91 D-KGVTVVVDNTFSPLVLS-------PARL---GADVVVHSISKFISGGADIIAGAV-CGPANLV-NSMMD---LHQG-- 152 (324)
Q Consensus 91 ~-~~~~~ivD~~~~~~~~~-------~~~~---~~d~~~~S~sK~~~~~g~r~~G~i-~~~~~~~-~~l~~---~~~~-- 152 (324)
+ +++.+.+|.+-++|... +.++ +..-+..+.||+--.+- - .||+ ..++++. .++.- +..+
T Consensus 246 e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~-G-~~~vl~r~k~~~~~q~~~~~~w~Gg~y 323 (491)
T KOG1383|consen 246 EIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPA-G-SSWVLYRNKELLPHQLFFHTDWLGGIY 323 (491)
T ss_pred HHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeec-C-cEEEEEcccccccceEEEeccccCccc
Confidence 8 99999999998777542 1222 34556678899532322 2 2666 4444432 22221 1111
Q ss_pred -hhhccCCCCCHH--HHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 153 -ALMLLGPTMNPK--VAFELS--ERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 153 -~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
+-+..++-+... ++++.+ .+-+.+.+..++..+++..+.+.+++.+. .+..+.
T Consensus 324 ~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp--------------------- 382 (491)
T KOG1383|consen 324 ASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKP--------------------- 382 (491)
T ss_pred cCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC---------------------
Confidence 112233333322 333322 23344667788889999999999998643 433222
Q ss_pred eEEEEEeC--CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 227 GLLCLDME--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 227 ~~~~~~l~--~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++|.+. ...+..++.+.|+. +|- .+. -...|.. +--...|+.+. .+=.+.
T Consensus 383 -~vs~~~~~s~~~~i~elsd~l~~---~GW---~ln----alq~P~a---------------~Hi~vt~~~~~-~~~A~~ 435 (491)
T KOG1383|consen 383 -LVSFILFGSNDVNIFELSDLLRK---KGW---ILN----ALQFPAA---------------IHICVTRVHAR-EDVADR 435 (491)
T ss_pred -cEEEEEccCCccchhhhhHHHHh---cCc---Ccc----ccCCCCc---------------eEEEEEeeecc-HHHHHH
Confidence 3455543 22344555555553 111 111 1112211 00134677776 444677
Q ss_pred HHHHHHHHHHhhhhcCC
Q 020548 305 RWSQFEKALSRMQDSGV 321 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~~~ 321 (324)
++.++.++++.+...+.
T Consensus 436 ~v~Di~~~~~el~~~p~ 452 (491)
T KOG1383|consen 436 FVADIRKVVEELKSLPE 452 (491)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 89999999998876543
No 380
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.91 E-value=1.5e-07 Score=83.79 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=131.8
Q ss_pred CHHHHHHhhhc---CCceEEEEecCCCC-cccccC---hHHHHHHHHhcCCEEEEcCCC-C--cCC----------CCcc
Q 020548 51 DHEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN---IPELSRLAHDKGVTVVVDNTF-S--PLV----------LSPA 110 (324)
Q Consensus 51 d~~~l~~~l~~---~~~~~v~~~~~~np-tG~~~~---~~~i~~l~~~~~~~~ivD~~~-~--~~~----------~~~~ 110 (324)
|+++++++++. +++..+.++-.+|. .|++.+ ++++.++|++||+.++.|.+. . ..+ .++.
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~ 247 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIE 247 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHH
Confidence 89999999943 34444444333343 466655 678899999999999999874 1 111 1111
Q ss_pred C------CCCcEEEeCCccccccCCCeeEEEEEcChh----HHHHHHHhhh---hhhhccCCCCCHHHHHHHhcCccc--
Q 020548 111 R------LGADVVVHSISKFISGGADIIAGAVCGPAN----LVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPH-- 175 (324)
Q Consensus 111 ~------~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~----~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (324)
+ ..+|.+..|++|.++.|- ||+++++++ +.++++.... +..+. +.++.....++..++..
T Consensus 248 eI~rE~~~~aDsvt~slsKglgApv---Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tY--GGlagrd~ea~a~Gl~e~~ 322 (467)
T TIGR02617 248 QITRETYKYADMLAMSAKKDAMVPM---GGLLCFKDDSFFDVYTECRTLCVVQEGFPTY--GGLEGGAMERLAVGLYDGM 322 (467)
T ss_pred HHHHHhhccCCEEEEEcCCCCCCcc---cceEEecchhHHHHHHHHHhhcccccCCcCc--CchhHHHHHHHHhhhhhcc
Confidence 1 268999999999987764 688877654 4445444322 11111 23444444444434433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE-----EeC-CHHHHHHHHHHhhcc
Q 020548 176 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL-----DME-TEEKANRLMNYLQNY 249 (324)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~l~-~~~~~~~~~~~l~~~ 249 (324)
...+++......++|.+.|.+.|..+..++ |++-++-- .++ ....+..+..+|-.
T Consensus 323 ~~~yl~~ri~qv~yl~~~L~~~Gvpi~~~G------------------ghav~iDa~~~lphip~~~fpa~al~~~ly~- 383 (467)
T TIGR02617 323 NLDWLAYRINQVQYLVNGLEEIGVVCQQAG------------------GHAAFVDAGKLLPHIPADQFPAHALACELYK- 383 (467)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCcEEecC------------------ccEEEEehhhhCCCCChhhCcHHHHHHHHHH-
Confidence 234555567778999999999998665433 12211110 112 12235555555554
Q ss_pred ccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 250 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 250 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
..|+-++..|..-..- -|... .. ...+-..+|+.+-..--+.+-++.+.+++..+.++
T Consensus 384 -~~GiR~~e~G~~~~~r-d~~~~--~~--------~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 384 -VAGIRAVEIGSLLLGR-DPKTG--KQ--------LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred -HcCcceEeecceeccc-CCCCC--cc--------CCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 4565555566441110 11110 00 01113789999984334556678888888877543
No 381
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=98.83 E-value=2.1e-07 Score=78.64 Aligned_cols=216 Identities=11% Similarity=0.129 Sum_probs=130.1
Q ss_pred HccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEE---ecCC----CHHHHHHhhhc-CCceEEEE-ecCCCCccccc
Q 020548 10 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF---VDIS----DHEMVNSAIVQ-GRTKVLYF-ESISNPTLAVA 80 (324)
Q Consensus 10 ~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~---~~~~----d~~~l~~~l~~-~~~~~v~~-~~~~nptG~~~ 80 (324)
+..-|+..|.+++|+|.++...++ ..|..+.+ ++.. |.+.+.+.+.+ +.-..|++ ...|||||.-+
T Consensus 141 ~~f~~~~~I~ip~PTWgNh~~if~-----~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDP 215 (427)
T KOG1411|consen 141 ARFYPSRDIYIPDPTWGNHKNIFK-----DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDP 215 (427)
T ss_pred HhhccccceeecCCcccccCcccc-----ccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCc
Confidence 334468999999999999888774 25665533 3332 66666665522 12234444 33899999875
Q ss_pred ---ChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC------------CCcEEEeCCccccccCCCeeEEEE---EcChhH
Q 020548 81 ---NIPELSRLAHDKGVTVVVDNTFSPLVLSPARL------------GADVVVHSISKFISGGADIIAGAV---CGPANL 142 (324)
Q Consensus 81 ---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~------------~~d~~~~S~sK~~~~~g~r~~G~i---~~~~~~ 142 (324)
..++|.++.++.+.+-+.|.+|.+|.....+. +..+++.|+.|.+|.-|-|+ |.+ +.+++.
T Consensus 216 t~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERv-Ga~svvc~~ad~ 294 (427)
T KOG1411|consen 216 TKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERV-GALSVVCKDADE 294 (427)
T ss_pred cHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcc-ceeEEEecCHHH
Confidence 46688888999999999999997775322211 34588999999999999997 765 455555
Q ss_pred HHHHHHhhhhhhh---ccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 143 VNSMMDLHQGALM---LLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 143 ~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
..++..-..-..+ +..+...+..+...+... ..+.....|+...++.+.+.|++.+... ++
T Consensus 295 A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~---------~W 365 (427)
T KOG1411|consen 295 AKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPG---------NW 365 (427)
T ss_pred HHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCc---------cH
Confidence 5554432210111 222222222333333322 2233455667777888888887765311 23
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.++.++ =++|+|.--+++..+.+.++..
T Consensus 366 ~hI~~Q-------IGMF~fTgl~peQv~~l~ke~~ 393 (427)
T KOG1411|consen 366 SHITKQ-------IGMFCFTGLNPEQVDWLTKEYH 393 (427)
T ss_pred HHHHHh-------hheeeecCCCHHHHHHHHhhhe
Confidence 333332 3377776556666666655543
No 382
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=98.83 E-value=2.1e-07 Score=87.21 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=118.0
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhc---C--CceEEEEecCCCCcccccChH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQ---G--RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~---~--~~~~v~~~~~~nptG~~~~~~ 83 (324)
+++++...|.+....+. ++|+ .++.++.+ |+++|++.+++ . .+-+|+.+..+..+|.+.|++
T Consensus 224 ~vl~s~~aHyS~~KAa~-----ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~ 298 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAAD-----IIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGID 298 (608)
T ss_pred EEEECCCccHHHHHHHH-----HcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHH
Confidence 68888888999888873 3565 35566553 89999888732 1 244566677899999999999
Q ss_pred HHHHHH---HhcCC--EEEEcCCCCcCC----CC------cc-----------------------------C-CCCcEEE
Q 020548 84 ELSRLA---HDKGV--TVVVDNTFSPLV----LS------PA-----------------------------R-LGADVVV 118 (324)
Q Consensus 84 ~i~~l~---~~~~~--~~ivD~~~~~~~----~~------~~-----------------------------~-~~~d~~~ 118 (324)
+|+++| +++|+ +++||++|+++. .+ |. . ..+|-++
T Consensus 299 eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSIt 378 (608)
T TIGR03811 299 KIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVT 378 (608)
T ss_pred HHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEE
Confidence 999998 66887 699999997642 11 00 0 1589999
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh-------------hhccCCCCC--HHHHHHHhcC----cccHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------------LMLLGPTMN--PKVAFELSER----IPHLGLR 179 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~----~~~~~~~ 179 (324)
.++||++..|-.. +++++.++.+.+.+.....+. ....+.-+. ....+..++. ...+...
T Consensus 379 vDpHK~g~~Py~~-G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~ 457 (608)
T TIGR03811 379 IDPHKMGYIPYSA-GGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKL 457 (608)
T ss_pred eCcccccccCCCe-EEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998776554 455677766545443211100 011222233 3444444433 2346788
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 020548 180 MKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 180 ~~~~~~~~~~l~~~L~~~~~ 199 (324)
+++..+.++++.+.|++.++
T Consensus 458 i~~~i~~A~~~~~~L~~~~~ 477 (608)
T TIGR03811 458 IGASIEGAHRFYDFLNNLEF 477 (608)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 88889999999999998643
No 383
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=98.68 E-value=1.4e-06 Score=74.00 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=100.6
Q ss_pred HHHHHHhhhc-----CCceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCC---------CCccCCC
Q 020548 52 HEMVNSAIVQ-----GRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLV---------LSPARLG 113 (324)
Q Consensus 52 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~---------~~~~~~~ 113 (324)
++++++.+.+ ..+.++++++.+...|.-. -.+.+.+++++||+.+|+||+|.+.. +..++..
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 5555555532 3578999999999988773 27899999999999999999993332 1123336
Q ss_pred CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q 020548 114 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (324)
+|+++ |||-|-. |||.... ++... .+++. ..++.|-..-.+.+....+.+. -+...++...--+.|...
T Consensus 335 pD~vT--FSKK~q~-----gGffh~~-~frpn-~pYri-fNTWmGdP~k~lll~~vv~~I~-~~~Ll~n~~~vG~~l~~g 403 (484)
T KOG1405|consen 335 PDVVT--FSKKFQT-----GGFFHDE-EFRPN-EPYRI-FNTWMGDPSKNLLLEEVVQEIK-REDLLNNVAHVGKALLKG 403 (484)
T ss_pred cccee--hhhhhhc-----CccccCc-ccCCC-chHHH-hhhhcCChHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 88888 8888744 3755433 22211 01111 1112222211111111111111 112222233333444444
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 262 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~ 262 (324)
|.++.. .+|+.-+ ...|+|.|+.+.+++......|+..++. .++..||.
T Consensus 404 L~~Lq~--~~p~~~~------------~~RGrGTF~a~d~ps~~~Rdk~i~~~~~------nGv~~GGC 452 (484)
T KOG1405|consen 404 LLELQA--KYPGKIN------------NLRGRGTFIAWDCPSGSIRDKLILIARL------NGVNLGGC 452 (484)
T ss_pred HHHHHH--hCchhhh------------cccccceEEEEeCCChHHHHHHHHHHHH------cCceeccc
Confidence 444321 1333111 1236899999999988888889888886 45566654
No 384
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.52 E-value=1.3e-05 Score=68.44 Aligned_cols=233 Identities=15% Similarity=0.109 Sum_probs=126.9
Q ss_pred CHHHHHHhhhc---CCceEEEEec-CCCCccccc---ChHHHHHHHHhcCCEEEEcCCC-C---cCCC--Cc--cCC---
Q 020548 51 DHEMVNSAIVQ---GRTKVLYFES-ISNPTLAVA---NIPELSRLAHDKGVTVVVDNTF-S---PLVL--SP--ARL--- 112 (324)
Q Consensus 51 d~~~l~~~l~~---~~~~~v~~~~-~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~-~---~~~~--~~--~~~--- 112 (324)
|++.|++.+.. +++..|+++- .|.-.|+.. .++++.++|++|++.++.|.+. . .|.. .+ .++
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~ 249 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIE 249 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHH
Confidence 88999998832 4677777754 445556654 5789999999999999999884 2 1211 11 000
Q ss_pred --------CCcEEEeCCccccccCCCeeEEEEEcChh----HHHHHHHhhh-hhhhccCCCCCHHHHHHHhcCccc-H-H
Q 020548 113 --------GADVVVHSISKFISGGADIIAGAVCGPAN----LVNSMMDLHQ-GALMLLGPTMNPKVAFELSERIPH-L-G 177 (324)
Q Consensus 113 --------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~----~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 177 (324)
-+|-.+.|.-|---. .+||+++.+.+ +...++...- ..+...-+.++......+..++.. + .
T Consensus 250 ~IarEm~sYaD~~~mS~KKD~lv---nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~ 326 (471)
T COG3033 250 EIAREMYSYADGCTMSAKKDGLV---NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNF 326 (471)
T ss_pred HHHHHHHhhhhhheeecccccee---ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCc
Confidence 478888899886423 23799976554 6666665432 001111122222222222223322 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe----C----CHHHHHHHHHHhhcc
Q 020548 178 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM----E----TEEKANRLMNYLQNY 249 (324)
Q Consensus 178 ~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l----~----~~~~~~~~~~~l~~~ 249 (324)
.+++...+..++|.+.|.+.|.++..|. +|.-+-+.. + +...++.|..+|-
T Consensus 327 ~yl~~Rv~Qv~YL~~~l~~~GVpi~~pa-------------------GGHavfvda~~~lphip~eqFpaqala~ely-- 385 (471)
T COG3033 327 DYLAHRVAQVQYLADGLEEAGVPIVQPA-------------------GGHAVFVDAGKFLPHIPAEQFPAQALACELY-- 385 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeEecC-------------------CCceEEeehhhhcCCCChhhCcHHHHHHHHH--
Confidence 3445556777899999999998766665 222222222 2 1223445544443
Q ss_pred ccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 250 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 250 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.|+-++.+|.+.-. ...... .....+.+.+|+.+-...-+.+-++.+.+++.++-+
T Consensus 386 ~e~GiRavElG~~~~~--rd~ktg---------~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 386 KEAGIRAVELGSFSLG--RDPKTG---------KQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred HHhCeeeeeeeceecc--cCCCcc---------ccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence 3566666666644111 000000 001122378999998322344455666666666643
No 385
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=98.46 E-value=2.6e-06 Score=74.18 Aligned_cols=175 Identities=9% Similarity=0.042 Sum_probs=114.2
Q ss_pred EEcCCCchhHHHHHhhhcCcccc---eeEEEecCC-----CHHHHHHhhhc--CC---ceEEEEecCCCCcccccChHHH
Q 020548 19 VAARTLYGGTHALLTHFFPRACN---ITTTFVDIS-----DHEMVNSAIVQ--GR---TKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 19 l~~~p~y~~~~~~~~~~~~~~~g---~~~~~~~~~-----d~~~l~~~l~~--~~---~~~v~~~~~~nptG~~~~~~~i 85 (324)
-.++.+|.+...... .+| -.++.++.+ ++++|++.+.. .+ +-+|-.+......|...|+..|
T Consensus 201 FtSeesHYSi~kaAa-----~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~i 275 (510)
T KOG0629|consen 201 FTSEESHYSIKKAAA-----FLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGI 275 (510)
T ss_pred EecccchhhHHHHHH-----HhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHH
Confidence 344466776666553 133 345555544 78899887732 22 4556666678888999999999
Q ss_pred HHHHHhcCCEEEEcCCCCc-CCCCccC---C----CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----
Q 020548 86 SRLAHDKGVTVVVDNTFSP-LVLSPAR---L----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----- 152 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~~~-~~~~~~~---~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~----- 152 (324)
+++|++|+.++.||+++++ +..+... + .++-+..+.||++|.|-.+. .+++....++..+......
T Consensus 276 adiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCs-a~l~r~~gll~~Cn~~~A~YLFq~ 354 (510)
T KOG0629|consen 276 ADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCS-AFLTREEGLLQRCNQMSAIYLFQQ 354 (510)
T ss_pred HHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhh-HHHHHHHHHHHhhcccchhhhhcc
Confidence 9999999999999999944 5433211 1 47889999999998864442 3334444566655432211
Q ss_pred ------------hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 153 ------------ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 153 ------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
-...+|-.....-.|+... +...++..+.+..++++++.+.+++.+.
T Consensus 355 dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~ 415 (510)
T KOG0629|consen 355 DKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG 415 (510)
T ss_pred CceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1112333333344555443 3455888899999999999999999865
No 386
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=98.34 E-value=8.3e-06 Score=67.97 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=129.3
Q ss_pred HHHHHhhhc-----CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC--------CccCCCCc
Q 020548 53 EMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL--------SPARLGAD 115 (324)
Q Consensus 53 ~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~--------~~~~~~~d 115 (324)
+.+++.+++ .++++.+-++.++=.|++.| .+.+++..|.+|.+.|.||++.+|.. ....+-.|
T Consensus 194 d~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD 273 (452)
T KOG1403|consen 194 DPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD 273 (452)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc
Confidence 455555532 34667777888888888865 56888889999999999999977642 11223467
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
+++ +.|-+|- |-++ +.++..+++.+.+......+-...|++|...+..++....-.-++..+...+.-++|...|+
T Consensus 274 IVt--mgKpmGN-GhPV-a~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~ 349 (452)
T KOG1403|consen 274 IVT--MGKPMGN-GHPV-AAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLR 349 (452)
T ss_pred hhe--ecccCCC-CCee-eEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 777 9999965 8887 99999999888887633323235566666555544332221122222333444445555555
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceec
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~ 267 (324)
++..+...-+ +..|-|-|+.+++- +...+...+.+++. ..+++- |..
T Consensus 350 ~~k~kh~~IG---------------DvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke--~y~VLl-saD------- 404 (452)
T KOG1403|consen 350 RLKQKHECIG---------------DVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKE--LYRVLL-SAD------- 404 (452)
T ss_pred HHhhhcccee---------------ccccceEEEeeeeecccccCCCcHHHHHHHHHHHHH--hhhEEE-ecC-------
Confidence 5433211111 33467888888764 23345556666664 222211 111
Q ss_pred cccccccCCCCHHHHHhcCCCCCeEE----EEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 268 CSGSSTSSELNAEEKALAGISAGLVR----MSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~iR----~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|...+.+. ++|. .+|..+.+..|+++|..+.+
T Consensus 405 ------------------GPh~NilKiKPPmCFn-eena~e~v~~ld~iLT~mee 440 (452)
T KOG1403|consen 405 ------------------GPHRNILKIKPPMCFN-EENADEFVLGLDEILTVMEE 440 (452)
T ss_pred ------------------CCCCceeecCCCcccC-hhhHHHHHHHHHHHHHHHHH
Confidence 11123333 3556 77888888899988876654
No 387
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=98.34 E-value=2.6e-05 Score=68.74 Aligned_cols=206 Identities=15% Similarity=0.195 Sum_probs=116.5
Q ss_pred EEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc----CCceEEEEecCCCCcccc--cChHHHH
Q 020548 18 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ----GRTKVLYFESISNPTLAV--ANIPELS 86 (324)
Q Consensus 18 vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~----~~~~~v~~~~~~nptG~~--~~~~~i~ 86 (324)
+.+++..+.+....+ .+.+++++.++.+ +.+.|.+++++ +-+-.+++.+.. .||.+ .++.+|.
T Consensus 185 ~Y~SDqahssveka~-----~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-TT~~ca~D~l~elg 258 (511)
T KOG0628|consen 185 AYCSDQAHSSVEKAC-----LIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-TTSSCAFDELEELG 258 (511)
T ss_pred EEecCcccchHHHhH-----hhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-CccccccccHHHhc
Confidence 556667777777766 3467788777665 56777777733 234455555442 34555 4799999
Q ss_pred HHHHhcCCEEEEcCCCC-cCCCCcc-C---C---CCcEEEeCCccccccCCCeeEEEEEcChhHHH-----HHH------
Q 020548 87 RLAHDKGVTVVVDNTFS-PLVLSPA-R---L---GADVVVHSISKFISGGADIIAGAVCGPANLVN-----SMM------ 147 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~-~~~~~~~-~---~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-----~l~------ 147 (324)
.+|+++|+++.||++|+ ..+..|. . . .+|-+.+..|||+...-.+..=|+-....+.. .+.
T Consensus 259 ~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~ 338 (511)
T KOG0628|consen 259 PVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ 338 (511)
T ss_pred chhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhh
Confidence 99999999999999994 3433321 1 1 36777888899876654443122221111111 111
Q ss_pred Hh-hhh--hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhcc
Q 020548 148 DL-HQG--ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 148 ~~-~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.. ..+ +...-+--...+-.+..++ +.+.++++++++.+.++.+-..+.+-+ +++..|.
T Consensus 339 ~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~---------------- 402 (511)
T KOG0628|consen 339 GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR---------------- 402 (511)
T ss_pred ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc----------------
Confidence 00 000 0001111122333444333 234456666666666666665555433 2443333
Q ss_pred CCCcceEEEEEeC-CHHHHHHHHHHhhc
Q 020548 222 EYGFGGLLCLDME-TEEKANRLMNYLQN 248 (324)
Q Consensus 222 ~~~~g~~~~~~l~-~~~~~~~~~~~l~~ 248 (324)
.=+++.|+++ +.+..+.+++++..
T Consensus 403 ---~lgLvcFRlk~~N~~ne~Ll~~in~ 427 (511)
T KOG0628|consen 403 ---ILGLVCFRLKGDNEINEALLNRLNS 427 (511)
T ss_pred ---ccceeEEeecCCcHHHHHHHHHHHh
Confidence 2348899998 45667888888884
No 388
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=98.28 E-value=3.7e-05 Score=70.49 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=113.9
Q ss_pred HHHHcc-CCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhh--cCCceEEEEecCCC
Q 020548 7 VLMQLC-SSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIV--QGRTKVLYFESISN 74 (324)
Q Consensus 7 ~~~~~~-~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~--~~~~~~v~~~~~~n 74 (324)
+++++. .+|+ ..+++...|+..+.... ..|.+++.+..+ |..+|.+... +++.+++.++.|+.
T Consensus 617 ~IRaY~~~kge~hRnvClIPvSAHGTNPASA~-----MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST 691 (1001)
T KOG2040|consen 617 VIRAYLESKGEGHRNVCLIPVSAHGTNPASAA-----MAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST 691 (1001)
T ss_pred HHHHHHHhccCCcceeEEEeecccCCChhhHH-----hcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc
Confidence 455553 2342 46777777877776662 378888888765 6777776652 35678999999976
Q ss_pred Ccccc-cChHHHHHHHHhcCCEEEEcCCC--CcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 75 PTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 75 ptG~~-~~~~~i~~l~~~~~~~~ivD~~~--~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.|.. ..++++.++.|++|.-+..|.+- +.. ...|.+.|.|+.=--+||.|+.|-+- ||=-.+|-.+.+.+.+..
T Consensus 692 -~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGG-GGPg~gPIgVK~HLapfL 769 (1001)
T KOG2040|consen 692 -HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGG-GGPGMGPIGVKKHLAPFL 769 (1001)
T ss_pred -cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccceeecccceeeecCCC-CCCCCCccchhhhccccC
Confidence 4555 57999999999999999999985 222 24688889999998999999765322 222223322233332221
Q ss_pred hh------------------hhhccCCC-CCHH-HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 151 QG------------------ALMLLGPT-MNPK-VAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 151 ~~------------------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+. +...+|+. ..+. -++..+-+...+....+...-|++++..+|+.+
T Consensus 770 P~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h 836 (1001)
T KOG2040|consen 770 PSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH 836 (1001)
T ss_pred CCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc
Confidence 10 01112211 1111 122223344445555555677889999999886
No 389
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.16 E-value=9.2e-06 Score=71.07 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=86.5
Q ss_pred HHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhc--CCceEEEEecC
Q 020548 5 SSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQ--GRTKVLYFESI 72 (324)
Q Consensus 5 ~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~--~~~~~v~~~~~ 72 (324)
.+.+.++. ..++.|+.+.-.+.+....+. . .|.+++.++.. |.+.+++.+++ ....+.+++++
T Consensus 89 ~l~l~~l~~r~~a~~Viw~ridqkSc~kai~----~-AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvlttt 163 (389)
T PF05889_consen 89 TLCLLALRMRPKAKYVIWPRIDQKSCFKAIE----R-AGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTT 163 (389)
T ss_dssp HHHHHHHHHHCT--EEEEEEEETHHHHHHHH----H-TT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred HHHHHHHhcccCCceEEEeeccccchHHHHH----h-cCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEec
Confidence 34444442 357899999977766665553 2 67777666631 67777777732 34567777887
Q ss_pred CCCcccccC-hHHHHHHHHhcCCEEEEcCCCCcCC-------CCccCC-CCcEEEeCCccccccCCCeeEEEEEc-ChhH
Q 020548 73 SNPTLAVAN-IPELSRLAHDKGVTVVVDNTFSPLV-------LSPARL-GADVVVHSISKFISGGADIIAGAVCG-PANL 142 (324)
Q Consensus 73 ~nptG~~~~-~~~i~~l~~~~~~~~ivD~~~~~~~-------~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~ 142 (324)
+--.+...| +++|+++|++||++.++-+||+--. ...... -.|+++.|+-|.|-.|-+ ++.+.+ ++..
T Consensus 164 scfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvG--gai~As~~~~~ 241 (389)
T PF05889_consen 164 SCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVG--GAIMASFDPSG 241 (389)
T ss_dssp STTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESS--HEEEEESSHHH
T ss_pred CccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCC--CcEEEecCHHH
Confidence 777788887 9999999999999999999983211 011122 368999999998755431 244443 4567
Q ss_pred HHHHHHhhh
Q 020548 143 VNSMMDLHQ 151 (324)
Q Consensus 143 ~~~l~~~~~ 151 (324)
+..+.....
T Consensus 242 i~~vs~~Yp 250 (389)
T PF05889_consen 242 ILAVSKEYP 250 (389)
T ss_dssp HHHHHHTSH
T ss_pred HHHHHHHhh
Confidence 777766543
No 390
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=98.14 E-value=0.00023 Score=61.46 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=122.7
Q ss_pred cCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
.++...|++++-...+|.-.+ +.-.... +.++|+|.+ +.+.-.+.+. ..|++.++..|.+|+.| + ++++.+
T Consensus 142 ~~~~ayv~~~~NeTi~Gv~v~--~~p~~~~--~~~~v~D~S-S~ilsr~iDvsk~dviyagaQKnlGpaG--l-tvvIvr 213 (365)
T COG1932 142 SDNDAYVHFCWNETISGVEVP--ELPDIGS--DGLLVADAS-SAILSRPIDVSKYDVIYAGAQKNLGPAG--L-TVVIVR 213 (365)
T ss_pred CCCccEEEEecCCcccceEcc--CCCCCCC--CceEEEecc-cHHhcCCCChhHcceEEEehhhccCccc--e-EEEEEc
Confidence 334444666654445555543 2122222 288999987 4554455555 57899999999998877 4 888889
Q ss_pred hhHHHHHHHh-hhh-----hhh---ccCCCCCHHHHHHHhcC------cccHHHHHHHHHHHHHHHHHHHHhCCCc--ee
Q 020548 140 ANLVNSMMDL-HQG-----ALM---LLGPTMNPKVAFELSER------IPHLGLRMKEHCHRALIFARRMKKLGLK--VL 202 (324)
Q Consensus 140 ~~~~~~l~~~-~~~-----~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~ 202 (324)
+++++++... .+. ... ..-++|+..+.+..... ...++...+|..++++.|.+++.+.++- ..
T Consensus 214 ~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v 293 (365)
T COG1932 214 PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLV 293 (365)
T ss_pred HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 9988888664 110 001 11234444433332222 2336677788899999999999998762 11
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.|. + .+-.-+.|.+.+.+-...|+..+.. .|. . ..-| |-
T Consensus 294 ~~~---~--------------RS~mnV~f~~~~~~ld~~fv~eae~---~gl-~-~lkG------hr------------- 332 (365)
T COG1932 294 AKA---N--------------RSRMNVTFTLVDAELDKGFVAEAEA---AGL-I-YLKG------HR------------- 332 (365)
T ss_pred chh---h--------------ccceeEEEEcCcHHHHHHHHHHHHH---cCC-c-eecc------cc-------------
Confidence 122 1 1233567888776667788888774 222 1 1111 00
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
. .+-+|+|++ .--.-+.++.|.+.++.+.+
T Consensus 333 ----~-vgGmRasiy-nA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 333 ----S-VGGLRASIY-NAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred ----C-CCceeeeee-cCCCHHHHHHHHHHHHHHHH
Confidence 0 234999999 76666778888888877754
No 391
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=98.07 E-value=0.002 Score=59.64 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=77.9
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
..++.+.++...+|+.+.+.++.-..- +|+++.-. |+++... . ..++..|++..|.. -|.+.|..++++.+++
T Consensus 202 ~~krkk~vvd~~~hpqtlsV~~TRa~~-~~i~v~~~---~~~~~~~-s-~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~ 274 (1001)
T KOG2040|consen 202 INKRKKFVVDSNCHPQTLSVVKTRAKG-FGIKVVVS---DIKEADY-S-SKDVSGVLVQYPDT-EGSVLDFDELVELAHA 274 (1001)
T ss_pred hcccceEEecCCCCcchhhhhhccccc-cceeEEec---CHHHhhc-c-ccceeEEEEEcCCC-CCcccCHHHHHHHhhc
Confidence 345678999999999999999755544 67775443 4443322 2 45688999998855 6999999999999999
Q ss_pred cCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccc
Q 020548 92 KGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF 124 (324)
Q Consensus 92 ~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~ 124 (324)
.|.++++---. ..+...|.++|+|+.++|....
T Consensus 275 ~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF 309 (1001)
T KOG2040|consen 275 NGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF 309 (1001)
T ss_pred cCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence 99887653222 2234578899999999987763
No 392
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.0028 Score=53.49 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=90.8
Q ss_pred HHHHHHHccCCC---CEEEEcCCCchhHHHHHhhhcCcccceeE----EEecCC------CHHHHHHhhh--cCCceEEE
Q 020548 4 ISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS------DHEMVNSAIV--QGRTKVLY 68 (324)
Q Consensus 4 i~~~~~~~~~~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~----~~~~~~------d~~~l~~~l~--~~~~~~v~ 68 (324)
+..++.++.+|- -+|+...-.|++-.-++...+.. .|+.+ +.+.+. ..+++...+. .+.+++|+
T Consensus 141 lh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~l-hG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~ 219 (465)
T KOG3846|consen 141 LHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKL-HGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVC 219 (465)
T ss_pred HHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhh-cCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEE
Confidence 344555666654 36888887777655555433332 45543 222221 3455555552 24578899
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++.++.-||+..++.+|.+.-+..|+++=.|-++ +......-++|+|+.+....|++..+.+.+||..+-.+
T Consensus 220 fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 220 FSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEK 293 (465)
T ss_pred eecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehh
Confidence 9999999999999999997777789999999886 33333344679999999999988765555556665443
No 393
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.066 Score=44.46 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=84.6
Q ss_pred cceeEEEecC--------CCHHHHHHhhhcCCceEEEEec--CCCCcccc-cChHHHHHHHHhcCCEEEEcCCCCcCCC-
Q 020548 40 CNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFES--ISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVL- 107 (324)
Q Consensus 40 ~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~--~~nptG~~-~~~~~i~~l~~~~~~~~ivD~~~~~~~~- 107 (324)
.|.+++.+.. .|++.+++.++.-....+++.+ .+--.-.. ..+++|+.+|..|+++-+|.++|+--..
T Consensus 123 agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee 202 (432)
T KOG3843|consen 123 AGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEE 202 (432)
T ss_pred cCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHH
Confidence 5666555443 1778888877443444333221 11111122 2489999999999999999999843211
Q ss_pred ------CccCC-CCcEEEeCCccccccCCCeeEEEEEc--ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHh-cCcccHH
Q 020548 108 ------SPARL-GADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQGALMLLGPTMNPKVAFELS-ERIPHLG 177 (324)
Q Consensus 108 ------~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 177 (324)
...+. ..|.++.|+.|.|-.|- ||.+++ +..++..+.+..++ ....+|+......++ .+...+.
T Consensus 203 ~i~~iaa~~~~grida~vqsldknf~vpv---ggaiia~fk~n~iq~iak~ypg---rasa~ps~dllitll~~gqn~f~ 276 (432)
T KOG3843|consen 203 CIHKIAAAAECGRIDAFVQSLDKNFMVPV---GGAIIAAFKDNFIQEIAKMYPG---RASASPSLDLLITLLSLGQNAFK 276 (432)
T ss_pred HHHHHHHHhhhccHHHHHHHhhhcceeec---chhHhhHhHHHHHHHHHHhCCC---ccccCccHHHHHHHHHhchhHHH
Confidence 11122 36899999999996553 566643 45677777665443 334445543333332 2333333
Q ss_pred HHHHHH----HHHHHHHHHHHHhCCC
Q 020548 178 LRMKEH----CHRALIFARRMKKLGL 199 (324)
Q Consensus 178 ~~~~~~----~~~~~~l~~~L~~~~~ 199 (324)
+...+. ...++++...-+..+.
T Consensus 277 e~~~eqkemf~~l~~ki~~~ae~~~e 302 (432)
T KOG3843|consen 277 ELFGEQKEMFLKLRNKIIKFAEAIGE 302 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333332 4444445444444443
No 394
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=94.70 E-value=1.7 Score=36.90 Aligned_cols=243 Identities=12% Similarity=0.056 Sum_probs=123.9
Q ss_pred CEEEEcCCCchhHHHHHhhhcCccccee-EEEe--------cCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNIT-TTFV--------DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~--------~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
|.|+.-.+.-.++.++-+ +|.. .+.. ..+|.+.++. +++.+.|+.|.--...|.-. .++-
T Consensus 101 dYiVTGsWS~KA~~EAkk------~~~~~~V~~~~k~y~ygkvPd~~~w~~---~~da~yvyyCaNETVHGVEf--~~~P 169 (370)
T KOG2790|consen 101 DYVVTGSWSAKAAEEAKK------YGTPNIVIPKLKSYTYGKVPDPSTWEL---NPDASYVYYCANETVHGVEF--DFIP 169 (370)
T ss_pred ceEEeccccHHHHHHHHh------hCCceEEeccccccccCcCCChhhccc---CCCccEEEEecCceeeceec--CCCC
Confidence 677777776666665542 3322 1111 2236565543 45666777665333333332 2221
Q ss_pred HHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----------hh
Q 020548 87 RLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-----------AL 154 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-----------~~ 154 (324)
+-.-+|+++++|-. +.|...|.+. ..+++.....|..|+.|.. .++.+++++.......+- +.
T Consensus 170 -~~~~~~~vlVaDmS-SnflSrpvDvsk~gvi~aGAQKN~G~aG~T---vvivr~dllg~~~~~tP~v~dyk~~~~NnSl 244 (370)
T KOG2790|consen 170 -VNDPKGAVLVADMS-SNFLSRPVDVSKFGVIFAGAQKNVGPAGVT---VVIVRKDLLGNALDITPSVLDYKIMDKNNSL 244 (370)
T ss_pred -CCCCCCceEEEecc-cchhcCCccchhcceEEeccccccCccccE---EEEEehhhhcccccCCccccceeeecccccc
Confidence 22346889999976 6777677766 4568888899999887633 344455665544332210 11
Q ss_pred hccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 155 MLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
....+........+.+.. ...+...-+...+..+.+.+.+.+...-+..|-.+... +-.-+.|
T Consensus 245 yNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~R--------------S~MNV~F 310 (370)
T KOG2790|consen 245 YNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVR--------------SRMNVPF 310 (370)
T ss_pred ccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhh--------------hhcccce
Confidence 111111111122222211 12244444445778888999999873322234322221 1123567
Q ss_pred EeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHH
Q 020548 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 311 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~ 311 (324)
++...+...+|++.... . .-+++-|..+ =+-||.|+= .--.-+..+.|.+
T Consensus 311 ri~~d~Le~eFLkeA~~---~--~mv~LKGhRS------------------------VGGiRASlY-NAisv~~~q~L~~ 360 (370)
T KOG2790|consen 311 RIEKDELEAEFLKEAAK---E--HMVQLKGHRS------------------------VGGIRASLY-NAISVEEVQKLAA 360 (370)
T ss_pred eecchHHHHHHHHHHHH---h--hhhccccccc------------------------cccchhhhh-ccccHHHHHHHHH
Confidence 77755556667666442 1 1222222211 145888874 3334445667777
Q ss_pred HHHhhhh
Q 020548 312 ALSRMQD 318 (324)
Q Consensus 312 ~l~~~~~ 318 (324)
.++.+.+
T Consensus 361 ~m~~F~k 367 (370)
T KOG2790|consen 361 FMKEFQK 367 (370)
T ss_pred HHHHHHH
Confidence 7766654
No 395
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.70 E-value=7.2 Score=28.40 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=50.2
Q ss_pred HHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc--CCEEEEcCCC
Q 020548 28 THALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF 102 (324)
Q Consensus 28 ~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~ 102 (324)
-...+..++.+ .|.++..++.+ +.+++.+.+.+.++++|.++... +.......++++..++. ++.+++=..+
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 33444455555 69999888776 56888887767889999987642 33445567888887776 7888887765
No 396
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=80.44 E-value=1.8 Score=41.37 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=34.5
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL 107 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~ 107 (324)
..=.|++..|...+++++++.||+.|+-||+|-|+.+|..
T Consensus 202 g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 202 GYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred eeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 3335788889999999999999999999999999977753
No 397
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=79.40 E-value=12 Score=30.96 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHccCCCCEE-EEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 7 VLMQLCSSGGHV-VAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 7 ~~~~~~~~gd~v-l~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
++.++++++-+| ++..+.-......++ . .|.++...+.+|.+.|.+++ + ++..|++..+.+......--..+
T Consensus 14 v~~~L~~~~~~V~~l~R~~~~~~~~~l~----~-~g~~vv~~d~~~~~~l~~al-~-g~d~v~~~~~~~~~~~~~~~~~l 86 (233)
T PF05368_consen 14 VVRALLSAGFSVRALVRDPSSDRAQQLQ----A-LGAEVVEADYDDPESLVAAL-K-GVDAVFSVTPPSHPSELEQQKNL 86 (233)
T ss_dssp HHHHHHHTTGCEEEEESSSHHHHHHHHH----H-TTTEEEES-TT-HHHHHHHH-T-TCSEEEEESSCSCCCHHHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeccchhhhhhhh----c-ccceEeecccCCHHHHHHHH-c-CCceEEeecCcchhhhhhhhhhH
Confidence 344455555443 334444222223332 2 68888899999999999999 5 45556665544433333345678
Q ss_pred HHHHHhcCCEEE
Q 020548 86 SRLAHDKGVTVV 97 (324)
Q Consensus 86 ~~l~~~~~~~~i 97 (324)
++.|++.|+-.+
T Consensus 87 i~Aa~~agVk~~ 98 (233)
T PF05368_consen 87 IDAAKAAGVKHF 98 (233)
T ss_dssp HHHHHHHT-SEE
T ss_pred HHhhhccccceE
Confidence 888888885444
No 398
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.76 E-value=6.8 Score=34.28 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=77.0
Q ss_pred HHccCCCCEEEEcC-CCc-hhHHHHHhhhcCcccceeEEEec-CCCH-----HHHHHhhhcCCceEEEEec---CCCCcc
Q 020548 9 MQLCSSGGHVVAAR-TLY-GGTHALLTHFFPRACNITTTFVD-ISDH-----EMVNSAIVQGRTKVLYFES---ISNPTL 77 (324)
Q Consensus 9 ~~~~~~gd~vl~~~-p~y-~~~~~~~~~~~~~~~g~~~~~~~-~~d~-----~~l~~~l~~~~~~~v~~~~---~~nptG 77 (324)
.-+.+.|.+|++.. -+| .+..+.++.+..+ .|++++.-. ..|+ ++++.+. ..+..+|++.+ -||-+.
T Consensus 161 ~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-~gv~vI~~~~G~DpAaVafDAi~~Ak-ar~~DvvliDTAGRLhnk~n 238 (340)
T COG0552 161 KYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-LGVPVISGKEGADPAAVAFDAIQAAK-ARGIDVVLIDTAGRLHNKKN 238 (340)
T ss_pred HHHHHCCCeEEEEecchHHHHHHHHHHHHHHH-hCCeEEccCCCCCcHHHHHHHHHHHH-HcCCCEEEEeCcccccCchh
Confidence 34566787777666 334 3455666667777 788887643 2343 5666666 67899999987 577777
Q ss_pred cccChHHHHHHHHhcC------CEEEEcCCCCc--CCC-Cc--cCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 78 AVANIPELSRLAHDKG------VTVVVDNTFSP--LVL-SP--ARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~------~~~ivD~~~~~--~~~-~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
...+++.|.+++++.. ++++.|.+-+. +.+ .. ...+.|-++ ++|.=| ..+ ||.++
T Consensus 239 LM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiI--lTKlDg--tAK-GG~il 304 (340)
T COG0552 239 LMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGII--LTKLDG--TAK-GGIIL 304 (340)
T ss_pred HHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEE--EEeccc--CCC-cceee
Confidence 7778999999998754 66777987521 111 00 112556666 677653 233 57665
No 399
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=77.17 E-value=24 Score=32.06 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=50.9
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccce---eEEEecCCCHHHHHHhhhcCCceEEEEecCC---CCc-----cccc
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDISDHEMVNSAIVQGRTKVLYFESIS---NPT-----LAVA 80 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~---npt-----G~~~ 80 (324)
.+.+ +|++..-+=....-.++ ..+ +|+ .+......+++++.+.+.+.+++++++.+.+ ++. |.+.
T Consensus 118 A~~~-~vLYVsGEES~~QiklR--A~R-L~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVs 193 (456)
T COG1066 118 AKRG-KVLYVSGEESLQQIKLR--ADR-LGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVS 193 (456)
T ss_pred HhcC-cEEEEeCCcCHHHHHHH--HHH-hCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHH
Confidence 4445 66666555444433332 113 443 2222334589999999977899999998743 333 5443
Q ss_pred C----hHHHHHHHHhcCCEEEE
Q 020548 81 N----IPELSRLAHDKGVTVVV 98 (324)
Q Consensus 81 ~----~~~i~~l~~~~~~~~iv 98 (324)
. ..++.++|+++|+.++.
T Consensus 194 QVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 194 QVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred HHHHHHHHHHHHHHHcCCeEEE
Confidence 3 34788899999987664
No 400
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=71.52 E-value=32 Score=27.59 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=46.7
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhc-C--cccceeEEEecC------------CCHHH---HHHhhhcCCceEEEEecC
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFF-P--RACNITTTFVDI------------SDHEM---VNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~-~--~~~g~~~~~~~~------------~d~~~---l~~~l~~~~~~~v~~~~~ 72 (324)
+++|+|+|+=..-.=++......+.. | .++|+.+-.+.+ .|++. |.+++....+.+|+-.-.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMa 145 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMA 145 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccC
Confidence 57899988765533344444433221 1 123333322221 25544 444453445677777778
Q ss_pred CCCccccc-ChHHHHHHHHh
Q 020548 73 SNPTLAVA-NIPELSRLAHD 91 (324)
Q Consensus 73 ~nptG~~~-~~~~i~~l~~~ 91 (324)
.|+||... |=..+.++|.+
T Consensus 146 pnaTGvr~~Dh~~~i~LC~s 165 (232)
T KOG4589|consen 146 PNATGVRIRDHYRSIELCDS 165 (232)
T ss_pred CCCcCcchhhHHHHHHHHHH
Confidence 89999884 78889999965
No 401
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=67.75 E-value=41 Score=23.83 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=39.6
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEE
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 96 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 96 (324)
++++.......+...+. .-.+.-++.+..+-+..++ ...+++++++.. ..+-+++.++|++.++.+
T Consensus 23 ~v~v~a~~~~~~~~~~~-------~~~lvIt~gdR~di~~~a~-~~~i~~iIltg~------~~~~~~v~~la~~~~i~v 88 (105)
T PF07085_consen 23 KVVVGAMSLSDFLEYLK-------PGDLVITPGDREDIQLAAI-EAGIACIILTGG------LEPSEEVLELAKELGIPV 88 (105)
T ss_dssp EEEE-SS-HHHHHHCHH-------TTEEEEEETT-HHHHHHHC-CTTECEEEEETT----------HHHHHHHHHHT-EE
T ss_pred eEEEEECCHHHHHhhcC-------CCeEEEEeCCcHHHHHHHH-HhCCCEEEEeCC------CCCCHHHHHHHHHCCCEE
Confidence 34555554444444331 1233344456777777777 777899998753 334489999999999888
Q ss_pred EE
Q 020548 97 VV 98 (324)
Q Consensus 97 iv 98 (324)
+.
T Consensus 89 i~ 90 (105)
T PF07085_consen 89 IS 90 (105)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 402
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=65.97 E-value=51 Score=28.95 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=48.3
Q ss_pred cCCceEEEEecCCCCcccccChHHHH----HHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEE
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELS----RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~----~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
+++++.|++- .|+|.|.+..-+.|. ++..+.-+++++++.- +++ .....+|-++.+-+=..|. +|
T Consensus 95 ~~~vk~vvL~-inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY---~IA~aAd~I~a~p~si~GS-----IG 165 (317)
T COG0616 95 DPSVKAVVLR-INSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASGGY---YIALAADKIVADPSSITGS-----IG 165 (317)
T ss_pred CCCCceEEEE-EECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecchhh---hhhccCCEEEecCCceeee-----ce
Confidence 4678887775 567888886544444 4443333667777653 222 2333566666555555533 47
Q ss_pred EEEcChhHHHHHHHhh
Q 020548 135 AVCGPANLVNSMMDLH 150 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~ 150 (324)
++..-+++.+.+.+..
T Consensus 166 Vi~~~~~~~~l~~k~G 181 (317)
T COG0616 166 VISGAPNFEELLEKLG 181 (317)
T ss_pred eEEecCCHHHHHHhcC
Confidence 7777777777776653
No 403
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.39 E-value=21 Score=33.53 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=44.8
Q ss_pred cc-eeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc--CCEEEEcCCCC
Q 020548 40 CN-ITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS 103 (324)
Q Consensus 40 ~g-~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~ 103 (324)
.| .++..+|.. +.+++.+.+.+.++++|.++.. |.......++++.+++. ++.+|+=..+.
T Consensus 35 ~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~---t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~ 102 (497)
T TIGR02026 35 AGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAI---TPAIYIACETLKFARERLPNAIIVLGGIHP 102 (497)
T ss_pred cCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecC---cccHHHHHHHHHHHHHHCCCCEEEEcCCCc
Confidence 57 577777753 5678887775678899998642 44455667888888876 89999988763
No 404
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=65.23 E-value=22 Score=29.13 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=60.8
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccc-cChHHHHHHHHhcCCEEEEcCCC-Cc--CCCCccCCC-CcEEEeCCccccc
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTF-SP--LVLSPARLG-ADVVVHSISKFIS 126 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~i~~l~~~~~~~~ivD~~~-~~--~~~~~~~~~-~d~~~~S~sK~~~ 126 (324)
++.+++++ +..+.++-+-.-+..+-.. .-.+++.++|++|++.+|+++=. -. ..-+....| -|.-+....|.+
T Consensus 24 ~~~ve~al-~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~- 101 (211)
T COG0352 24 LEWVEAAL-KGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELL- 101 (211)
T ss_pred HHHHHHHH-hCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhc-
Confidence 78899999 7777777775544444443 34579999999999999998754 11 112222332 245555566776
Q ss_pred cCCCeeEEEEEcChhHHHHHHHh
Q 020548 127 GGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 127 ~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+++..+ |+-+.+.+........
T Consensus 102 ~~~~iI-G~S~h~~eea~~A~~~ 123 (211)
T COG0352 102 GPGLII-GLSTHDLEEALEAEEL 123 (211)
T ss_pred CCCCEE-EeecCCHHHHHHHHhc
Confidence 447776 8887766655555543
No 405
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=65.10 E-value=27 Score=30.26 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=44.1
Q ss_pred EcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 20 AARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 20 ~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
..-|+|++..+.-... . ...-+..++.. -++.++++. +.+++.+++-+...+ ..+-++|.++|+++|+.++=
T Consensus 49 ~G~~~y~sv~dlp~~~--~-~DlAvi~vp~~~v~~~l~e~~-~~gvk~avI~s~Gf~---~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 49 LGLPVFNTVAEAVEAT--G-ANASVIYVPPPFAADAILEAI-DAGIDLIVCITEGIP---VLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred eCeeccCCHHHHhhcc--C-CCEEEEEcCHHHHHHHHHHHH-HCCCCEEEEECCCCC---HHHHHHHHHHHHHcCCEEEC
Confidence 3445566665544200 0 24455555543 366777766 667777666543322 22234899999999998875
Q ss_pred cCCC
Q 020548 99 DNTF 102 (324)
Q Consensus 99 D~~~ 102 (324)
=++.
T Consensus 122 PNc~ 125 (291)
T PRK05678 122 PNCP 125 (291)
T ss_pred CCCC
Confidence 5553
No 406
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=64.68 E-value=42 Score=24.34 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=41.5
Q ss_pred hhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc---CCEEEEcC
Q 020548 34 HFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK---GVTVVVDN 100 (324)
Q Consensus 34 ~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~---~~~~ivD~ 100 (324)
.++.. .|.++.+.... .++++.+.+.+.++++|.++... +.......++++.+++. ++.+++=.
T Consensus 21 ~~l~~-~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 21 RALRD-AGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 34444 79998776543 67788777767788998887542 22335667777777776 34455444
No 407
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=64.30 E-value=63 Score=27.52 Aligned_cols=37 Identities=5% Similarity=0.125 Sum_probs=20.7
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 93 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 93 (324)
..+++.+.+++.+.+.|.+.+|+.|. +++.++++..+
T Consensus 132 e~~~~~~~~~~~gi~~I~lv~PtT~~------eri~~i~~~a~ 168 (263)
T CHL00200 132 ESDYLISVCNLYNIELILLIAPTSSK------SRIQKIARAAP 168 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCH------HHHHHHHHhCC
Confidence 34445555545667777777665432 55555555543
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=63.95 E-value=72 Score=28.76 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=35.0
Q ss_pred ecCCCHHHHHHhhhcCCceEEEEecCCCCc--------ccccC----hHHHHHHHHhcCCEEEE
Q 020548 47 VDISDHEMVNSAIVQGRTKVLYFESISNPT--------LAVAN----IPELSRLAHDKGVTVVV 98 (324)
Q Consensus 47 ~~~~d~~~l~~~l~~~~~~~v~~~~~~npt--------G~~~~----~~~i~~l~~~~~~~~iv 98 (324)
.+..+++.+.+.+...++++|++.+.++.. |.... +..+.++++++|+.+++
T Consensus 142 ~~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvil 205 (372)
T cd01121 142 LAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFI 205 (372)
T ss_pred EccCcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 344578888888856788999998865432 11221 34577889999977653
No 409
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=62.81 E-value=55 Score=23.56 Aligned_cols=84 Identities=23% Similarity=0.187 Sum_probs=50.1
Q ss_pred HHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhc-CCceEEEEec-CCCCcccccCh
Q 020548 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQ-GRTKVLYFES-ISNPTLAVANI 82 (324)
Q Consensus 8 ~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~-~~~~~v~~~~-~~nptG~~~~~ 82 (324)
+..+.+.|=+++.... +...++ . .|+++..+... .-.++.+.+.+ .++.+|+... +.+......+-
T Consensus 18 a~~l~~~G~~i~AT~g----Ta~~L~----~-~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg 88 (112)
T cd00532 18 APKLSSDGFPLFATGG----TSRVLA----D-AGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDG 88 (112)
T ss_pred HHHHHHCCCEEEECcH----HHHHHH----H-cCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCCh
Confidence 3344456767765543 333332 3 57766554321 12445666657 7888877643 33322234567
Q ss_pred HHHHHHHHhcCCEEEEcC
Q 020548 83 PELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~ 100 (324)
..|++.|-+++++++.+-
T Consensus 89 ~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 89 TALLRLARLYKIPVTTPN 106 (112)
T ss_pred HHHHHHHHHcCCCEEECH
Confidence 899999999999998763
No 410
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=62.44 E-value=21 Score=27.10 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=44.3
Q ss_pred cceeEEEecC-C--CHHHHHHhhhcCCceEEEE-ecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 40 CNITTTFVDI-S--DHEMVNSAIVQGRTKVLYF-ESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 40 ~g~~~~~~~~-~--d~~~l~~~l~~~~~~~v~~-~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.|.++..+-. + --.++.+.+..+++.+|++ --|.++-..-.|++.|.++|.-||+++-..-+
T Consensus 47 tgL~V~~~~SGplGGDqQIga~Ia~g~id~vIFf~DPl~~~phepDi~aLlRlc~v~nIP~AtN~a 112 (143)
T TIGR00160 47 TGLNINAMLSGPMGGDQQIGALIAEGKIDAVIFFWDPLNAQPHEPDVKALLRLCTVWNIPLATNVA 112 (143)
T ss_pred HCCCeEEeccCCccHHHHHHHHHHhCCCCEEEEecCCCCCCCCCcCHHHHHHHHHhhCcccccCHH
Confidence 4555544322 1 2356777675677776554 77888888889999999999999998776654
No 411
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=62.17 E-value=50 Score=24.26 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=41.2
Q ss_pred cceeEEEecCCCHHHHHHhhhc-CCceEEEEecCCCCcccccChHHHHHHHHhcC--CEEEEcCCC
Q 020548 40 CNITTTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKG--VTVVVDNTF 102 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~--~~~ivD~~~ 102 (324)
.|..+...+....+...+.+.. .++++|.++. .+.......++++..|+.+ +.+++=..+
T Consensus 15 ~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~---~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 15 AGFIVAEHDVLSADDIVEDIKELLKPDVVGISL---MTSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred CCCeeeecCCCCHHHHHHHHHHhcCCCEEEEee---ccccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 5677777776666666666634 6888998875 2333345677888888864 888887766
No 412
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.10 E-value=83 Score=26.74 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=21.9
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 92 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 92 (324)
..+.+.+.+++.+...|.+.+|+.|. +++..+++..
T Consensus 130 e~~~~~~~~~~~gl~~I~lvap~t~~------eri~~i~~~s 165 (258)
T PRK13111 130 EAEELRAAAKKHGLDLIFLVAPTTTD------ERLKKIASHA 165 (258)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHHhC
Confidence 34445555545678888888876652 4555555544
No 413
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.33 E-value=20 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=35.9
Q ss_pred CHHHHHHhhhc--CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
+.+.|.+.+.+ .+.++++++- .--|.+.+.+.++++||+.|+++++|-=
T Consensus 129 ~~~~ll~~~~~~l~~~~~vVLSD--Y~KG~L~~~q~~I~~ar~~~~pVLvDPK 179 (467)
T COG2870 129 DENKLLEKIKNALKSFDALVLSD--YAKGVLTNVQKMIDLAREAGIPVLVDPK 179 (467)
T ss_pred hHHHHHHHHHHHhhcCCEEEEec--cccccchhHHHHHHHHHHcCCcEEECCC
Confidence 34444444422 4677888875 3468888899999999999999999943
No 414
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=59.84 E-value=19 Score=28.98 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 62 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.+..|+++ ..|+.|......++.++|++||+.++.
T Consensus 155 l~Pa~VicE-i~~~dG~mar~~~~~~fa~~h~l~~it 190 (203)
T COG0108 155 LKPAGVICE-IMNDDGTMARLPELEEFAKEHGLPVIT 190 (203)
T ss_pred CCCcEEEEE-EeCCCccccChHHHHHHHHHcCCcEEE
Confidence 345566666 557799999999999999999988874
No 415
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.24 E-value=59 Score=29.86 Aligned_cols=88 Identities=8% Similarity=0.096 Sum_probs=48.6
Q ss_pred cCCCCEEEEcC-CCc-hhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 12 CSSGGHVVAAR-TLY-GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 12 ~~~gd~vl~~~-p~y-~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
...|.+|.+.+ -.| .+....++.+... .|+++.. ..++.++.+.+...+.+.|++.++..+.-....++++.++.
T Consensus 249 ~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~-lgvp~~~--~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~ 325 (432)
T PRK12724 249 LHMGKSVSLYTTDNYRIAAIEQLKRYADT-MGMPFYP--VKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFY 325 (432)
T ss_pred HhcCCeEEEecccchhhhHHHHHHHHHHh-cCCCeee--hHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHH
Confidence 44566554444 222 2233333333333 4554432 22456666666445678899987655544445566666665
Q ss_pred Hh------cCCEEEEcCCC
Q 020548 90 HD------KGVTVVVDNTF 102 (324)
Q Consensus 90 ~~------~~~~~ivD~~~ 102 (324)
+. ...++++|.++
T Consensus 326 ~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 326 SCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HhhcCCCCCeEEEEEeCCC
Confidence 43 25778888875
No 416
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=59.14 E-value=30 Score=26.06 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=38.4
Q ss_pred CCHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHH-HHhc-CCE-EEEcCCC
Q 020548 50 SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRL-AHDK-GVT-VVVDNTF 102 (324)
Q Consensus 50 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l-~~~~-~~~-~ivD~~~ 102 (324)
.+++.|.+.+++.++..+++-.|-|..|...+ +++.++. .++. ++. .++||-+
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSC
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence 48999999997789999999999999998865 2333333 3333 655 4599987
No 417
>PLN00191 enolase
Probab=57.50 E-value=71 Score=29.73 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=54.3
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
++.+=+-+.+.+|....-...+..+..+ ..+++.--+. .+++++++.+...-..++.+-. |..|.+.+..+++++
T Consensus 307 L~~~y~I~~IEDPl~~~D~eg~~~Lt~~-~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl--~qiGGITea~~~a~l 383 (457)
T PLN00191 307 FVSDYPIVSIEDPFDQDDWEHWAKLTSL-EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKV--NQIGTVTESIEAVKM 383 (457)
T ss_pred HhhcCCcEEEECCCCcccHHHHHHHHcc-CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecc--cccCCHHHHHHHHHH
Confidence 3443345677888766655555544433 3333322221 3678888887444455555543 567888888899999
Q ss_pred HHhcCCEEEEcC
Q 020548 89 AHDKGVTVVVDN 100 (324)
Q Consensus 89 ~~~~~~~~ivD~ 100 (324)
|+++|..+++-.
T Consensus 384 A~~~G~~~~ish 395 (457)
T PLN00191 384 SKAAGWGVMTSH 395 (457)
T ss_pred HHHCCCEEEeCC
Confidence 999998887643
No 418
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.50 E-value=25 Score=31.02 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=20.1
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+.++|.+.|+++| +++.|..|.-+
T Consensus 110 ~e~~~iveaA~~rg-v~~meg~~~R~ 134 (351)
T KOG2741|consen 110 AEAEEIVEAAEARG-VFFMEGLWWRF 134 (351)
T ss_pred HHHHHHHHHHHHcC-cEEEeeeeeec
Confidence 46789999999988 88889887443
No 419
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=57.37 E-value=43 Score=28.94 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=46.0
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCE
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT 95 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~ 95 (324)
.-+..-|+|++..+.-... . ....+..++.. -++.++++. +.+++.+++-+...+- .+-++|.++|+++|+.
T Consensus 44 ~~v~G~~~y~sv~dlp~~~--~-~Dlavi~vpa~~v~~~l~e~~-~~Gvk~avIis~Gf~e---~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 44 TTVLGLPVFDSVKEAVEET--G-ANASVIFVPAPFAADAIFEAI-DAGIELIVCITEGIPV---HDMLKVKRYMEESGTR 116 (286)
T ss_pred ceecCeeccCCHHHHhhcc--C-CCEEEEecCHHHHHHHHHHHH-HCCCCEEEEECCCCCH---HHHHHHHHHHHHcCCE
Confidence 3344456777776654210 0 24455555543 356666766 6677776665433211 1347999999999988
Q ss_pred EEEcCC
Q 020548 96 VVVDNT 101 (324)
Q Consensus 96 ~ivD~~ 101 (324)
++==++
T Consensus 117 ilGPNc 122 (286)
T TIGR01019 117 LIGPNC 122 (286)
T ss_pred EECCCC
Confidence 875555
No 420
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=56.22 E-value=76 Score=27.78 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=54.6
Q ss_pred CEE-EEcCCCchh---HHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHH
Q 020548 16 GHV-VAARTLYGG---THALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 16 d~v-l~~~p~y~~---~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
.+| ++.+|.... ..+-++..++. .|+++...... |.+...+.+ .+++.++++..-+. ...-...+...
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v~~~ndi~~a~~~l-~g~~d~i~~p~dn~---i~s~~~~l~~~ 234 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAVTSVNDIPRAVQAL-LGKVDVIYIPTDNL---IVSAIESLLQV 234 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEecCcccccHHHHHHh-cCCCcEEEEecchH---HHHHHHHHHHH
Confidence 455 677777633 33444455555 79998887765 445545555 57889998765332 22256788889
Q ss_pred HHhcCCEEEEcCC
Q 020548 89 AHDKGVTVVVDNT 101 (324)
Q Consensus 89 ~~~~~~~~ivD~~ 101 (324)
+.+++++++.++.
T Consensus 235 a~~~kiPli~sd~ 247 (322)
T COG2984 235 ANKAKIPLIASDT 247 (322)
T ss_pred HHHhCCCeecCCH
Confidence 9999999999886
No 421
>smart00642 Aamy Alpha-amylase domain.
Probab=56.20 E-value=11 Score=29.52 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.0
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
.|...+++++++.||++|+.+++|-+.
T Consensus 66 ~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 66 FGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 344557889999999999999999986
No 422
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=55.90 E-value=78 Score=26.90 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++..+++..+.|. |..- + +|+++..+... ++.++.+.+++.++++|+.+.-.++ +.+.
T Consensus 169 ~~~~~v~~H~af~-Y~~~------~-ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~ 233 (266)
T cd01018 169 KQRAFMVYHPAWG-YFAR------D-YGLTQIPIEEEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFST-------KSAE 233 (266)
T ss_pred CCCeEEEECchhH-HHHH------H-cCCEEEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc-------HHHH
Confidence 4566777777664 3322 2 67776544211 4566666665678898888753332 4455
Q ss_pred HHHHhcCCEEEE
Q 020548 87 RLAHDKGVTVVV 98 (324)
Q Consensus 87 ~l~~~~~~~~iv 98 (324)
.++++.|+.++.
T Consensus 234 ~la~~~g~~v~~ 245 (266)
T cd01018 234 AIAREIGAKVVT 245 (266)
T ss_pred HHHHHcCCeEEE
Confidence 778888877654
No 423
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=55.55 E-value=47 Score=25.27 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=40.1
Q ss_pred ceeEEEecCC---CHHHHHHhhhcCCceEEEEec-CCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 41 NITTTFVDIS---DHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 41 g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~-~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
|+++..+-.. .-.++.+.++++++.+|+... |..+.+...+...|++.|-+++++++..
T Consensus 50 Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 50 GLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred CCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 7766554111 225567777677888887653 3455554567889999999999998865
No 424
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=55.37 E-value=1.2e+02 Score=25.89 Aligned_cols=91 Identities=11% Similarity=0.199 Sum_probs=47.6
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc-CCEEEEcCCC--CcCCCCccCCCCcEEEeCCcccccc
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISG 127 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~ 127 (324)
..+.+.+..++...+.|++.+|+.+. +.+.++++.. |.+..+= .+ .+. ..+......=.+....| +..
T Consensus 135 e~~~~~~~~~~~gi~~I~lvaPtt~~------~rl~~i~~~a~GFiY~vs-~~GvTG~-~~~~~~~~~~~v~~vr~-~~~ 205 (265)
T COG0159 135 ESDELLKAAEKHGIDPIFLVAPTTPD------ERLKKIAEAASGFIYYVS-RMGVTGA-RNPVSADVKELVKRVRK-YTD 205 (265)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHHhCCCcEEEEe-cccccCC-CcccchhHHHHHHHHHH-hcC
Confidence 45566666656788889998887764 5566666554 4333322 11 111 11101001111111222 223
Q ss_pred CCCeeEEEEEcChhHHHHHHHhhh
Q 020548 128 GADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 128 ~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
....+ ||=+.+++..+.+..+..
T Consensus 206 ~Pv~v-GFGIs~~e~~~~v~~~AD 228 (265)
T COG0159 206 VPVLV-GFGISSPEQAAQVAEAAD 228 (265)
T ss_pred CCeEE-ecCcCCHHHHHHHHHhCC
Confidence 34444 888888888888877754
No 425
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=54.41 E-value=73 Score=27.33 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=42.7
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++..+++..|.|. |..- . +|+++..+.. . ++.++.+.+++.++++|+.+.-.++ +.
T Consensus 170 ~~~~~v~~H~af~-Y~~~------~-~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 234 (282)
T cd01017 170 KGKTFVTQHAAFG-YLAR------R-YGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASS-------KI 234 (282)
T ss_pred CCCeEEEecccHH-HHHH------H-CCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 4667888888776 3322 2 6777654321 1 4566666665678998888764443 44
Q ss_pred HHHHHHhcCCEEE
Q 020548 85 LSRLAHDKGVTVV 97 (324)
Q Consensus 85 i~~l~~~~~~~~i 97 (324)
+..++++.|+.++
T Consensus 235 ~~~la~~~g~~v~ 247 (282)
T cd01017 235 AETLAKETGAKLL 247 (282)
T ss_pred HHHHHHHcCCcEE
Confidence 5557788887654
No 426
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=54.31 E-value=22 Score=26.46 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=23.8
Q ss_pred HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 54 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.+++.+ ..++.+++++.-. .+.+++.++|++++++++.=
T Consensus 73 ~l~~l~-~~~~P~iIvt~~~------~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 73 RLEKLF-SYNPPCIIVTRGL------EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHHC-TTT-S-EEEETTT---------HHHHHHHHHCT--EEEE
T ss_pred HHHHHh-CCCCCEEEEECcC------CCCHHHHHHHHHhCCcEEEc
Confidence 444455 5678888887644 34589999999999988753
No 427
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.31 E-value=92 Score=23.48 Aligned_cols=56 Identities=7% Similarity=0.088 Sum_probs=39.4
Q ss_pred hhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc
Q 020548 34 HFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 92 (324)
Q Consensus 34 ~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 92 (324)
.++.. .|.++++.-.+ .++++.++..+.++++|.++.... .....++++.+.+++.
T Consensus 25 ~~lr~-~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 25 RALTE-AGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYG--HGEIDCRGLREKCIEA 81 (137)
T ss_pred HHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccc--cCHHHHHHHHHHHHhc
Confidence 33334 79999887654 578888888678899999876544 2334567777777765
No 428
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=54.12 E-value=42 Score=24.16 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=34.3
Q ss_pred CHHHHHHhhhcCCceEEEEec---CCCCcccccChHHHHHHHHhc-CCEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFES---ISNPTLAVANIPELSRLAHDK-GVTVV 97 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~---~~nptG~~~~~~~i~~l~~~~-~~~~i 97 (324)
++....+.+.+.++.+|.+.+ -.||+|..+.++++.+..++. |+.||
T Consensus 53 ~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV 103 (107)
T PF08821_consen 53 KLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVV 103 (107)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEe
Confidence 344444444467889999977 567888777899999998887 87554
No 429
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.68 E-value=53 Score=24.72 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC
Q 020548 31 LLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 93 (324)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 93 (324)
.+..++.. .|.++...-.+ .++++.++..++++.+|.+++-. +.....++++.+.+++.|
T Consensus 20 iv~~~l~~-~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~--~~~~~~~~~~~~~l~~~g 80 (134)
T TIGR01501 20 ILDHAFTN-AGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLY--GHGEIDCKGLRQKCDEAG 80 (134)
T ss_pred HHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--ccCHHHHHHHHHHHHHCC
Confidence 33344444 79999887665 67888887767889999987653 233346788888888876
No 430
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=52.58 E-value=79 Score=27.28 Aligned_cols=68 Identities=9% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
.+..+++..|.|.=+.. + +|+++..+-. . ++.++.+.+++.++++|+.+.-.++ +.
T Consensus 176 ~~~~~v~~H~af~Y~~~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 240 (287)
T cd01137 176 EKRKLVTSEGAFSYFAK-------A-YGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVND-------RL 240 (287)
T ss_pred ccCEEEEecccHHHHHH-------H-cCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCh-------HH
Confidence 35678888887763332 2 6777654211 1 4556666665678999988764443 55
Q ss_pred HHHHHHhcCCEE
Q 020548 85 LSRLAHDKGVTV 96 (324)
Q Consensus 85 i~~l~~~~~~~~ 96 (324)
+..++++.|+.+
T Consensus 241 ~~~ia~~~gv~v 252 (287)
T cd01137 241 MKQVAKETGAKI 252 (287)
T ss_pred HHHHHHHhCCcc
Confidence 677888888765
No 431
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=52.47 E-value=98 Score=27.41 Aligned_cols=78 Identities=21% Similarity=0.116 Sum_probs=46.0
Q ss_pred ceeEEEecCCCHHHHHHhhhcCCceEEEEe--cCCCCccc-----c-cC---hHHHHHHHHhcCCEEEEcCCC--CcCCC
Q 020548 41 NITTTFVDISDHEMVNSAIVQGRTKVLYFE--SISNPTLA-----V-AN---IPELSRLAHDKGVTVVVDNTF--SPLVL 107 (324)
Q Consensus 41 g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~--~~~nptG~-----~-~~---~~~i~~l~~~~~~~~ivD~~~--~~~~~ 107 (324)
+..+..=+..+.++.+.++ +.....|.+. +-+|=++. . .. +.++++.++.+++.+|.|.-. ++-..
T Consensus 150 ~~~viaGNV~T~e~a~~Li-~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~ 228 (343)
T TIGR01305 150 EHTIMAGNVVTGEMVEELI-LSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVA 228 (343)
T ss_pred CCeEEEecccCHHHHHHHH-HcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHH
Confidence 3444444445788888887 6667777654 22232322 2 12 456666677778999999753 11122
Q ss_pred CccCCCCcEEEe
Q 020548 108 SPARLGADVVVH 119 (324)
Q Consensus 108 ~~~~~~~d~~~~ 119 (324)
..+..|+|.+.-
T Consensus 229 KALA~GAd~VMl 240 (343)
T TIGR01305 229 KAFGAGADFVML 240 (343)
T ss_pred HHHHcCCCEEEE
Confidence 345568887774
No 432
>PLN02591 tryptophan synthase
Probab=52.45 E-value=1.4e+02 Score=25.17 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=12.2
Q ss_pred HHHHHhhhcCCceEEEEecCCCC
Q 020548 53 EMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 53 ~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+++.+.+++.+...|++.+|+.+
T Consensus 121 ~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 121 EALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCC
Confidence 34444443456666666665543
No 433
>PRK04296 thymidine kinase; Provisional
Probab=52.17 E-value=54 Score=26.22 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=46.6
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh--cCCceEEEEecCCCCcccccChHHHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV--QGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~--~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
+...|.+|++..|.+..... ......+ .|+++........+++.+.+. ..+..+|++.-.+..+ ...+.++.+.
T Consensus 26 ~~~~g~~v~i~k~~~d~~~~-~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~--~~~v~~l~~~ 101 (190)
T PRK04296 26 YEERGMKVLVFKPAIDDRYG-EGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLD--KEQVVQLAEV 101 (190)
T ss_pred HHHcCCeEEEEecccccccc-CCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCC--HHHHHHHHHH
Confidence 34568888887664332111 1122233 565443322234555555441 3467889998764321 1125567777
Q ss_pred HHhcCCEEEEcCC
Q 020548 89 AHDKGVTVVVDNT 101 (324)
Q Consensus 89 ~~~~~~~~ivD~~ 101 (324)
++..|+.+|+=.-
T Consensus 102 l~~~g~~vi~tgl 114 (190)
T PRK04296 102 LDDLGIPVICYGL 114 (190)
T ss_pred HHHcCCeEEEEec
Confidence 7778888776443
No 434
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.10 E-value=91 Score=23.35 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred CchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC---CEEEEc
Q 020548 24 LYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG---VTVVVD 99 (324)
Q Consensus 24 ~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~---~~~ivD 99 (324)
.|..-...+..++.. .|.++.....+ +++++.++..+.++.+|.+++-. +.....++++.+..++.+ +.+++=
T Consensus 14 ~Hd~g~~iv~~~l~~-~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 14 GHDRGAKVIATAYAD-LGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred ccHHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 343333444445544 79999887654 67777666557889999987643 334445778888887764 455553
No 435
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=50.42 E-value=1.1e+02 Score=28.59 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=34.8
Q ss_pred ecCCCHHHHHHhhhcCCceEEEEecCCCCc--------ccccCh----HHHHHHHHhcCCEEEE
Q 020548 47 VDISDHEMVNSAIVQGRTKVLYFESISNPT--------LAVANI----PELSRLAHDKGVTVVV 98 (324)
Q Consensus 47 ~~~~d~~~l~~~l~~~~~~~v~~~~~~npt--------G~~~~~----~~i~~l~~~~~~~~iv 98 (324)
++..+++.+.+.+.+.++++|++.+.+... |....+ ..|.++++++|+.++.
T Consensus 154 ~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvll 217 (454)
T TIGR00416 154 LSETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFI 217 (454)
T ss_pred cCCCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 334578888888866688999998865432 222222 3577889999976553
No 436
>PLN02654 acetate-CoA ligase
Probab=50.36 E-value=1.4e+02 Score=29.29 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=50.9
Q ss_pred HHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 7 VLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 7 ~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
.++.+ +++||+|.+..|.-..+...+-... + .|.....++.. ..+++...+++-++++++.+......|...++.+
T Consensus 136 ~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~-~-~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~ 213 (666)
T PLN02654 136 YLKDVGVKKGDAVVIYLPMLMELPIAMLACA-R-IGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKD 213 (666)
T ss_pred HHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH-H-cCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHH
Confidence 34443 7799999998877666554442222 3 57766666544 6788888886678888887664444455555554
Q ss_pred HHH
Q 020548 85 LSR 87 (324)
Q Consensus 85 i~~ 87 (324)
+.+
T Consensus 214 ~~~ 216 (666)
T PLN02654 214 IVD 216 (666)
T ss_pred HHH
Confidence 443
No 437
>PTZ00081 enolase; Provisional
Probab=50.33 E-value=91 Score=28.87 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=54.3
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEec--CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+++=+-+.+.+|....-...++.+..+ .| +.+.--+ ..+++.+.+.+...-...+.+.. |..|.+.+..++++
T Consensus 294 l~~y~I~~IEDPl~~~D~eg~~~Lt~~-lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKv--nqiGGITe~l~~a~ 370 (439)
T PTZ00081 294 VKKYPIVSIEDPFDQDDWEAYAKLTAA-IGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKV--NQIGTVTEAIEAAK 370 (439)
T ss_pred HhcCCcEEEEcCCCcccHHHHHHHHHh-hCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEecc--ccccCHHHHHHHHH
Confidence 343345677888877666666555444 42 2222211 13588888888444455555543 56788888899999
Q ss_pred HHHhcCCEEEEc
Q 020548 88 LAHDKGVTVVVD 99 (324)
Q Consensus 88 l~~~~~~~~ivD 99 (324)
+|+++|..+++=
T Consensus 371 lA~~~Gi~~iis 382 (439)
T PTZ00081 371 LAQKNGWGVMVS 382 (439)
T ss_pred HHHHcCCcEEEe
Confidence 999999887763
No 438
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=50.16 E-value=1.2e+02 Score=23.57 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+++.+++.|-+|.+..-.-..... . .++++...+..|++.+.+++ . +...|+...+.++. .....+.+.
T Consensus 14 l~~~L~~~~~~V~~~~R~~~~~~~-------~-~~~~~~~~d~~d~~~~~~al-~-~~d~vi~~~~~~~~-~~~~~~~~~ 82 (183)
T PF13460_consen 14 LAKQLLRRGHEVTALVRSPSKAED-------S-PGVEIIQGDLFDPDSVKAAL-K-GADAVIHAAGPPPK-DVDAAKNII 82 (183)
T ss_dssp HHHHHHHTTSEEEEEESSGGGHHH-------C-TTEEEEESCTTCHHHHHHHH-T-TSSEEEECCHSTTT-HHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEecCchhccc-------c-cccccceeeehhhhhhhhhh-h-hcchhhhhhhhhcc-ccccccccc
Confidence 455566667665555543333332 2 57888898888999999999 5 45666665533322 234466777
Q ss_pred HHHHhcCC
Q 020548 87 RLAHDKGV 94 (324)
Q Consensus 87 ~l~~~~~~ 94 (324)
+.|++.|+
T Consensus 83 ~a~~~~~~ 90 (183)
T PF13460_consen 83 EAAKKAGV 90 (183)
T ss_dssp HHHHHTTS
T ss_pred cccccccc
Confidence 77777653
No 439
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=50.15 E-value=83 Score=27.41 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=67.1
Q ss_pred EEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEE-ec-------CCCCccccc----ChHHH
Q 020548 18 VVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF-ES-------ISNPTLAVA----NIPEL 85 (324)
Q Consensus 18 vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~-------~~nptG~~~----~~~~i 85 (324)
+.+...+|.+....+...... -.......|..|.+.+.+.+++.++.+|+= -. ..+|.-.+. -.--|
T Consensus 30 ~~~DkLTYAgn~~~l~~~~~~-~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~L 108 (340)
T COG1088 30 VNLDKLTYAGNLENLADVEDS-PRYRFVQGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTL 108 (340)
T ss_pred EEEecccccCCHHHHHhhhcC-CCceEEeccccCHHHHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHH
Confidence 556669999988887544332 244555556668899999885446665542 11 222222221 13467
Q ss_pred HHHHHhcCC-----EEEEcCCCCcCCCC--------cc---------CCCCcEEEeCCccccccC
Q 020548 86 SRLAHDKGV-----TVVVDNTFSPLVLS--------PA---------RLGADVVVHSISKFISGG 128 (324)
Q Consensus 86 ~~l~~~~~~-----~~ivD~~~~~~~~~--------~~---------~~~~d~~~~S~sK~~~~~ 128 (324)
.+.++++.. .|=.||+|+.+..+ |. +...|.++.+..++||.|
T Consensus 109 LEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TYglp 173 (340)
T COG1088 109 LEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLP 173 (340)
T ss_pred HHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHcCCc
Confidence 777888763 23379999665421 11 115788899999999876
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.66 E-value=1.1e+02 Score=27.74 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=49.7
Q ss_pred CCCEEE-Ec-CCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc-CCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 14 SGGHVV-AA-RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 14 ~gd~vl-~~-~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
.|.+|. +. ++...+....++.+... .|+++.... +.+++.+.+.. .+..+|++..+.........+.++.++.+
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~-lgvpv~~~~--~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDI-MGIPVKAIE--SFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhc-CCcceEeeC--cHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 344443 33 33334555556666655 677665433 66777765522 45688999775443334444566666655
Q ss_pred hc----CCEEEEcCCC
Q 020548 91 DK----GVTVVVDNTF 102 (324)
Q Consensus 91 ~~----~~~~ivD~~~ 102 (324)
.. ..++++|.+.
T Consensus 282 ~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 282 ACGRDAEFHLAVSSTT 297 (388)
T ss_pred hcCCCCeEEEEEcCCC
Confidence 42 4778888775
No 441
>PLN02522 ATP citrate (pro-S)-lyase
Probab=49.63 E-value=81 Score=30.49 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=50.1
Q ss_pred cCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 21 ARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 21 ~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.-|.|.+..+..+. .+. ....+.+++.. -.+++.+++...+++.+++.+-.-|- .+..+|.++|+++|+.+|==
T Consensus 62 ~iPVf~tv~eA~~~-~~~-~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe---~d~~~l~~~Ar~~g~rlIGP 136 (608)
T PLN02522 62 AIPVHGSIEAACKA-HPT-ADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPE---SDTKQLIAYARANNKVVIGP 136 (608)
T ss_pred CccccchHHHHHHh-CCC-CcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCCh---hhHHHHHHHHHHcCCEEECC
Confidence 34888888887753 222 46677788764 34566666634578877776543331 34789999999999887755
Q ss_pred CC
Q 020548 100 NT 101 (324)
Q Consensus 100 ~~ 101 (324)
++
T Consensus 137 Nc 138 (608)
T PLN02522 137 AT 138 (608)
T ss_pred CC
Confidence 44
No 442
>PRK07377 hypothetical protein; Provisional
Probab=49.44 E-value=77 Score=25.15 Aligned_cols=46 Identities=9% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEE
Q 020548 23 TLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 23 p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~ 69 (324)
+.+......++.+..+ +..++..++..|.+++.+++.+..+.+++.
T Consensus 90 ~~~~~l~~~l~~~~~~-y~~rlElv~y~~~~~l~~aL~~~eVh~~c~ 135 (184)
T PRK07377 90 SVFDQLIDQLRTILDK-YHLRLELVVYPDLQALEQALRDKEVHAICL 135 (184)
T ss_pred ccHHHHHHHHHHHHHH-hCceeeEEecCCHHHHHHHHhcCCccEEec
Confidence 3344455555556655 677788888889999999996677776654
No 443
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.22 E-value=65 Score=20.46 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=29.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
.++++.+..++.+.+.+.++..+|..|. .++.++++++|+.++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~~----~~~~~~~~~~gi~~i 58 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFGA----VEFYKAAKKAGIKPI 58 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccCH----HHHHHHHHHcCCeEE
Confidence 5666666665678888888876655443 466777778887665
No 444
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=49.19 E-value=60 Score=24.35 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.0
Q ss_pred hHHHHHHHHhcCCEEEE
Q 020548 82 IPELSRLAHDKGVTVVV 98 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~iv 98 (324)
+.++++.||+.|+-+++
T Consensus 46 lge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 68999999999988774
No 445
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.87 E-value=78 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=40.8
Q ss_pred HhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC
Q 020548 32 LTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 93 (324)
Q Consensus 32 ~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 93 (324)
+..++.. .|.++...-.+ .++.+.++..++++.+|.+++-. |.....++++.+.+++.|
T Consensus 19 v~~~L~~-~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~--t~~~~~~~~~~~~l~~~g 78 (128)
T cd02072 19 LDHAFTE-AGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLY--GHGEIDCKGLREKCDEAG 78 (128)
T ss_pred HHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cCCHHHHHHHHHHHHHCC
Confidence 3334434 79999887665 67887777657889999987642 233456788888888875
No 446
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=47.46 E-value=1.4e+02 Score=25.72 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=56.6
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 92 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 92 (324)
+|...+..-|.|....+.++.. . .+..+++++.. -.|++.+++ +...++|++-+-+=| +.|.-++.+.+++.
T Consensus 43 kgG~~~~g~PVf~tV~EA~~~~--~-a~~svI~Vp~~~aadai~EAi-da~i~liv~ITEgIP---~~D~~~~~~~a~~~ 115 (293)
T COG0074 43 KGGQTILGLPVFNTVEEAVKET--G-ANASVIFVPPPFAADAILEAI-DAGIKLVVIITEGIP---VLDMLELKRYAREK 115 (293)
T ss_pred CCceEEcCccHHHHHHHHHHhh--C-CCEEEEecCcHHHHHHHHHHH-hCCCcEEEEEeCCCC---HHHHHHHHHHHHhc
Confidence 4456777789999998888654 2 46778888765 456777788 655777776543222 24667888889999
Q ss_pred CCEEEEcCC
Q 020548 93 GVTVVVDNT 101 (324)
Q Consensus 93 ~~~~ivD~~ 101 (324)
|..++==++
T Consensus 116 g~~iiGPnc 124 (293)
T COG0074 116 GTRLIGPNC 124 (293)
T ss_pred CCEEECCCC
Confidence 977775554
No 447
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=46.99 E-value=13 Score=35.84 Aligned_cols=26 Identities=15% Similarity=0.538 Sum_probs=22.3
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
..+++++++.||++|+-||+|-++-+
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH 253 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNH 253 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCC
Confidence 34688999999999999999999843
No 448
>PLN03244 alpha-amylase; Provisional
Probab=46.97 E-value=21 Score=35.36 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL 107 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~ 107 (324)
|+...|...+++++++.||+.|+-||.|-|+.++..
T Consensus 433 pssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~ 468 (872)
T PLN03244 433 ASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 468 (872)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCC
Confidence 556677778899999999999999999999866643
No 449
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=46.42 E-value=1e+02 Score=28.44 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=54.3
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+.+=+-+.+.+|....-...+..+..+ . .+++.--+. .++..+++.+....+.++.+.. |..|.+.+..++++
T Consensus 275 le~~~i~~iEdPl~~~D~~~~~~L~~~-~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~--~~iGGItea~~ia~ 351 (425)
T TIGR01060 275 VEKYPIVSIEDGLSEEDWEGWAELTKE-LGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKP--NQIGTLTETLDAVE 351 (425)
T ss_pred HhcCCcEEEEcCCCcccHHHHHHHHHh-cCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecc--cccCCHHHHHHHHH
Confidence 333346678888876665556544433 3 233322221 2588888888445556665543 56788899999999
Q ss_pred HHHhcCCEEEE
Q 020548 88 LAHDKGVTVVV 98 (324)
Q Consensus 88 l~~~~~~~~iv 98 (324)
+|+++|+.+++
T Consensus 352 lA~~~Gi~~vv 362 (425)
T TIGR01060 352 LAKKAGYTAVI 362 (425)
T ss_pred HHHHcCCcEEE
Confidence 99999987553
No 450
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=46.23 E-value=94 Score=26.10 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++..+++..+.|.-+.. . +|+++..+.. . ++.++.+.+++.++++|+.+.-.++ +.
T Consensus 149 ~~~~~v~~h~~~~Y~~~-------~-~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~ 213 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAK-------R-YGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSS-------KL 213 (256)
T ss_dssp SGGEEEEEESTTHHHHH-------H-TT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HH
T ss_pred cCCeEEEEChHHHHHHH-------h-cCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HH
Confidence 45788888888874432 2 6776554431 1 4556666666678889888754333 45
Q ss_pred HHHHHHhcCCEEEE
Q 020548 85 LSRLAHDKGVTVVV 98 (324)
Q Consensus 85 i~~l~~~~~~~~iv 98 (324)
+..++++.|+.++.
T Consensus 214 ~~~la~~~g~~vv~ 227 (256)
T PF01297_consen 214 AEALAKETGVKVVY 227 (256)
T ss_dssp HHHHHHCCT-EEEE
T ss_pred HHHHHHHcCCcEEE
Confidence 56668888877653
No 451
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=44.79 E-value=78 Score=24.07 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=37.1
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChH-HHHHHHH----hcCC-EEEEcCCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP-ELSRLAH----DKGV-TVVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~-~i~~l~~----~~~~-~~ivD~~~ 102 (324)
+++.+.+.+++.++..|++--|.|+.|...+.. .+.++++ +.++ ++++||=.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERl 98 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERL 98 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 778888888777899999999999999997633 2333333 2443 45578753
No 452
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=44.67 E-value=50 Score=22.42 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.+...+++++.+.++|++..-..+ .-.+.+.++|+.++++++...+
T Consensus 13 ~~~vlkaIk~gkakLViiA~Da~~----~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 13 AKQTLKAITNCNVLQVYIAKDAEE----HVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred hHHHHHHHHcCCeeEEEEeCCCCH----HHHHHHHHHHHhCCCCEEEeCC
Confidence 356667775788999998642111 2357899999999999865544
No 453
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.66 E-value=1.7e+02 Score=23.66 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCEEEEcCC--CchhHH-HHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 15 GGHVVAART--LYGGTH-ALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 15 gd~vl~~~p--~y~~~~-~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+.+|++..+ +.+... ..+..++.. .|.++.+.-.+ .++++.+.+.+.++++|.++..... ....++++++..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~--~~~~~~~~i~~lr 158 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTT--TMGGMKEVIEALK 158 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc--cHHHHHHHHHHHH
Confidence 346665543 333332 233334444 79999876554 6788888886788999998764333 3456777777777
Q ss_pred hcC----CEEEEcCCCCcCCCCc-cCCCCcEEEeCC
Q 020548 91 DKG----VTVVVDNTFSPLVLSP-ARLGADVVVHSI 121 (324)
Q Consensus 91 ~~~----~~~ivD~~~~~~~~~~-~~~~~d~~~~S~ 121 (324)
+.+ +.+++=... +.... ...|+|.+..+.
T Consensus 159 ~~~~~~~~~i~vGG~~--~~~~~~~~~GaD~~~~da 192 (201)
T cd02070 159 EAGLRDKVKVMVGGAP--VNQEFADEIGADGYAEDA 192 (201)
T ss_pred HCCCCcCCeEEEECCc--CCHHHHHHcCCcEEECCH
Confidence 753 556655431 11111 223677666543
No 454
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=44.65 E-value=16 Score=31.40 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.5
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
..|...+++++++.||++|+.||+|-+.
T Consensus 47 ~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 47 RFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp TTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccchhhhhhhhhhccccccceEEEeeec
Confidence 4566678999999999999999999886
No 455
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=44.59 E-value=2.5e+02 Score=27.13 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=47.0
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+++||+|.+.-|.-..+...+-... + .|.....++.. ..+++...+++-++++++........|...++.+..
T Consensus 110 v~~gd~V~i~~~n~~e~~~~~lA~~-~-~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~ 183 (625)
T TIGR02188 110 VKKGDRVAIYMPMIPEAAIAMLACA-R-IGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIV 183 (625)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-H-hCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHH
Confidence 6789999888876655554442222 3 57766666543 678888888666888888765544455555554433
No 456
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=44.48 E-value=51 Score=28.63 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=51.5
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 92 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 92 (324)
-|-+.+|....-...|+.+..+ .| +.+.--|. .+++.+++.+.......+++-. |..|++.+.-+.+++|+++
T Consensus 151 IvsIEDpf~edD~e~w~~lt~~-~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~--NQigTvte~lea~~~a~~~ 227 (295)
T PF00113_consen 151 IVSIEDPFDEDDWEGWAKLTKR-LGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKP--NQIGTVTETLEAVKLAKSA 227 (295)
T ss_dssp EEEEESSS-TT-HHHHHHHHHH-HTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-H--HHHSSHHHHHHHHHHHHHT
T ss_pred eEEEEccccccchHHHHHHHHh-hhcceeeecccccccchhhhhccchhhhccchhhhh--hhhHHHHHHHHHHHHHHHC
Confidence 6778888887777777666555 55 33433332 3789999988444455665543 5678898888999999999
Q ss_pred CCEEEEcC
Q 020548 93 GVTVVVDN 100 (324)
Q Consensus 93 ~~~~ivD~ 100 (324)
|..+++=.
T Consensus 228 g~~~vvS~ 235 (295)
T PF00113_consen 228 GWGVVVSH 235 (295)
T ss_dssp T-EEEEE-
T ss_pred CceeeccC
Confidence 97776643
No 457
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=44.39 E-value=77 Score=27.84 Aligned_cols=74 Identities=7% Similarity=0.103 Sum_probs=46.1
Q ss_pred cCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH-hcCCEEEE
Q 020548 21 ARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTVVV 98 (324)
Q Consensus 21 ~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~-~~~~~~iv 98 (324)
.-|+|++..+..... . ....+.++|.. -++.++++. +..++++++-+-+-|- .+..++.++++ ++|+.+|=
T Consensus 73 Gvpvy~sv~ea~~~~--~-~D~avI~VPa~~v~dai~Ea~-~aGI~~~ViiteGfpe---~d~~~l~~~~~~~~g~rliG 145 (317)
T PTZ00187 73 GLPVFATVKEAKKAT--G-ADASVIYVPPPHAASAIIEAI-EAEIPLVVCITEGIPQ---HDMVKVKHALLSQNKTRLIG 145 (317)
T ss_pred CccccCCHHHHhccc--C-CCEEEEecCHHHHHHHHHHHH-HcCCCEEEEECCCCch---hhHHHHHHHHhhcCCCEEEC
Confidence 679999888877321 1 35667777654 467788887 6778877765533332 22445555554 57877765
Q ss_pred cCC
Q 020548 99 DNT 101 (324)
Q Consensus 99 D~~ 101 (324)
=++
T Consensus 146 PNc 148 (317)
T PTZ00187 146 PNC 148 (317)
T ss_pred CCC
Confidence 554
No 458
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=44.25 E-value=21 Score=34.00 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.3
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||+|-++.++
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 45889999999999999999998443
No 459
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=44.23 E-value=1.6e+02 Score=24.85 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC
Q 020548 62 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 106 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~ 106 (324)
+...+|++..- .......++.+.++.+. |.++|+|++. .+..
T Consensus 155 ~~fD~iFiDad--K~~Y~~y~~~~l~ll~~-GGviv~DNvl~~G~v 197 (247)
T PLN02589 155 GTFDFIFVDAD--KDNYINYHKRLIDLVKV-GGVIGYDNTLWNGSV 197 (247)
T ss_pred CcccEEEecCC--HHHhHHHHHHHHHhcCC-CeEEEEcCCCCCCcc
Confidence 46778888752 33333445555666654 7789999996 4443
No 460
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=43.95 E-value=20 Score=33.50 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
....|...+++++++.||++|+.||+|-|.
T Consensus 74 d~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 74 RTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 345667778999999999999999999997
No 461
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.73 E-value=2.1e+02 Score=24.52 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=45.0
Q ss_pred EEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh---c-CCceEEEEecCCCCcccccChHHHHHHHHh---
Q 020548 19 VAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV---Q-GRTKVLYFESISNPTLAVANIPELSRLAHD--- 91 (324)
Q Consensus 19 l~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---~-~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--- 91 (324)
+..++...+....|..+... .++++... .+.+++.+.+. + .+...|++.++....-....++++.++.+.
T Consensus 109 i~~D~~ri~~~~ql~~~~~~-~~~~~~~~--~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~ 185 (270)
T PRK06731 109 ITTDHSRIGTVQQLQDYVKT-IGFEVIAV--RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP 185 (270)
T ss_pred EecCCCCHHHHHHHHHHhhh-cCceEEec--CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC
Confidence 33334444566666555554 56655442 36666665542 1 357899998764433223345555555433
Q ss_pred cCCEEEEcCCC
Q 020548 92 KGVTVVVDNTF 102 (324)
Q Consensus 92 ~~~~~ivD~~~ 102 (324)
...++++|.+.
T Consensus 186 ~~~~LVl~a~~ 196 (270)
T PRK06731 186 DYICLTLSASM 196 (270)
T ss_pred CeEEEEEcCcc
Confidence 34688888764
No 462
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=43.70 E-value=85 Score=23.73 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=37.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHH-hcC-CEEEEcCCCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAH-DKG-VTVVVDNTFS 103 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~-~~~-~~~ivD~~~~ 103 (324)
+.+.|.+.+++.++..+++--|-|+.|...+ +++.++..+ ..+ -+.++||-|+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 4778888886778999999999999998854 333333333 234 4567999873
No 463
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=43.38 E-value=77 Score=21.47 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=32.5
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.++..+++++.+.++|++..-..+ .-.+.+..+|++++++++.-+.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~----~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVAEDADP----RLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred HHHHHHHHHcCCeeEEEEECCCCH----HHHHHHHHHHHHcCCCEEEECC
Confidence 466777776788999998652222 1357888999999998875543
No 464
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=43.35 E-value=74 Score=23.74 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=37.3
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccCh----HHHHHH-HHhcC-CEEEEcCCCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANI----PELSRL-AHDKG-VTVVVDNTFS 103 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~----~~i~~l-~~~~~-~~~ivD~~~~ 103 (324)
+.+.|.+.++..++..+++--|-|+.|...+. ++.++. .++.+ -+.++||-++
T Consensus 36 ~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~T 94 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERLS 94 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 57888888867789999999999999998652 233222 23345 3566899763
No 465
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=43.21 E-value=68 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCCceEEEEecC-CCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~-~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.+.+++.+ ++.-++++-+- .---+....++.|.+++++.++++++|+-
T Consensus 92 v~~i~k~L--~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaD 140 (306)
T KOG3974|consen 92 VDIIEKLL--QRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDAD 140 (306)
T ss_pred HhHHHHHH--hheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCC
Confidence 34444444 46667777542 11122334678999999999999999973
No 466
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=43.17 E-value=1.3e+02 Score=21.92 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=41.8
Q ss_pred HHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEecCCCHHHHHHhhh--cCCceEEEEecCCCCcccccCh
Q 020548 6 SVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDISDHEMVNSAIV--QGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 6 ~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~--~~~~~~v~~~~~~nptG~~~~~ 82 (324)
.+...+.+ .++|++....+.... ..+...+.. .|..+..++ +.+....... +++.-+|+++ .+|...++
T Consensus 5 ~~~~~i~~-~~~i~i~g~g~s~~~a~~~~~~l~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~iS----~~g~~~~~ 76 (139)
T cd05013 5 KAVDLLAK-ARRIYIFGVGSSGLVAEYLAYKLLR-LGKPVVLLS--DPHLQLMSAANLTPGDVVIAIS----FSGETKET 76 (139)
T ss_pred HHHHHHHh-CCEEEEEEcCchHHHHHHHHHHHHH-cCCceEEec--CHHHHHHHHHcCCCCCEEEEEe----CCCCCHHH
Confidence 34444433 356666665443222 112222223 466665553 3333333221 3444444444 34555667
Q ss_pred HHHHHHHHhcCCEEE
Q 020548 83 PELSRLAHDKGVTVV 97 (324)
Q Consensus 83 ~~i~~l~~~~~~~~i 97 (324)
.++++.++++|+.++
T Consensus 77 ~~~~~~a~~~g~~iv 91 (139)
T cd05013 77 VEAAEIAKERGAKVI 91 (139)
T ss_pred HHHHHHHHHcCCeEE
Confidence 788899999976554
No 467
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=42.72 E-value=96 Score=27.84 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=48.1
Q ss_pred ceeEEEecCCCHHHHHHhhhcCCceEEEEecCC--CCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-CCCccCCCCcE
Q 020548 41 NITTTFVDISDHEMVNSAIVQGRTKVLYFESIS--NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-VLSPARLGADV 116 (324)
Q Consensus 41 g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~--nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-~~~~~~~~~d~ 116 (324)
+.++..-...+.++.+++. +-.++.|++++.. +..+...+++.+.++++..++.||+|.-. .+. ....+.+|+|.
T Consensus 236 ~~pviiKgV~~~eda~~a~-~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~a 314 (361)
T cd04736 236 PHKLLVKGIVTAEDAKRCI-ELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANA 314 (361)
T ss_pred CCCEEEecCCCHHHHHHHH-HCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 3343333345888888888 7788999987532 22333345788888887778999999643 111 12334556666
Q ss_pred EE
Q 020548 117 VV 118 (324)
Q Consensus 117 ~~ 118 (324)
+.
T Consensus 315 V~ 316 (361)
T cd04736 315 VL 316 (361)
T ss_pred EE
Confidence 65
No 468
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=42.51 E-value=1.7e+02 Score=24.03 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=23.3
Q ss_pred cCCceEEEEecCCCCcccccChHHHHHHH---HhcCCEEE
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELSRLA---HDKGVTVV 97 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~---~~~~~~~i 97 (324)
++++++|++.- +.|.|...+.++|.+.. ++.+.+++
T Consensus 44 d~~ik~vvL~~-~s~gg~~~~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 44 DDRIKGIVLDL-DGLSGGLAKLEELRQALERFRASGKPVI 82 (222)
T ss_pred CCCeEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHhCCeEE
Confidence 46789999874 56777666666666554 33455554
No 469
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=42.36 E-value=37 Score=26.89 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=34.2
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCccccc-ChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVA-NIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.++.+++++ +..+..|.+-.+........ -.+++.++|+++++.+++++-
T Consensus 14 ~~~~l~~~~-~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~ 64 (180)
T PF02581_consen 14 FLEQLEAAL-AAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDR 64 (180)
T ss_dssp HHHHHHHHH-HTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-
T ss_pred HHHHHHHHH-HCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCC
Confidence 356777778 66788888877655544444 367899999999988887763
No 470
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=41.86 E-value=1.1e+02 Score=26.96 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=51.6
Q ss_pred HccCCCCEEEEcCCCchhHHHHH---hhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEE-E-------ecCCCCccc
Q 020548 10 QLCSSGGHVVAARTLYGGTHALL---THFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY-F-------ESISNPTLA 78 (324)
Q Consensus 10 ~~~~~gd~vl~~~p~y~~~~~~~---~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~-~-------~~~~nptG~ 78 (324)
.|++.|+.|++.+..-..+...+ +....+-.++.+...|..|.+.|++.++..+...|+ + ++..+|+-.
T Consensus 21 ~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y 100 (343)
T KOG1371|consen 21 ALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSY 100 (343)
T ss_pred HHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhh
Confidence 46788999888886554444444 333332245777778888999999998444444333 1 112333111
Q ss_pred cc----ChHHHHHHHHhcCCEEEEc
Q 020548 79 VA----NIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 79 ~~----~~~~i~~l~~~~~~~~ivD 99 (324)
.. -.--+.+.++++|..-++=
T Consensus 101 ~~nNi~gtlnlLe~~~~~~~~~~V~ 125 (343)
T KOG1371|consen 101 YHNNIAGTLNLLEVMKAHNVKALVF 125 (343)
T ss_pred eehhhhhHHHHHHHHHHcCCceEEE
Confidence 11 1225667788887554443
No 471
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.82 E-value=2.6e+02 Score=25.86 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=46.2
Q ss_pred cCCCCEEEE-cC-CCchhHHHHHhhhcCcccceeEEEec-CCCHH-----HHHHhhhcCCceEEEEecCCCCcccccChH
Q 020548 12 CSSGGHVVA-AR-TLYGGTHALLTHFFPRACNITTTFVD-ISDHE-----MVNSAIVQGRTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 12 ~~~gd~vl~-~~-p~y~~~~~~~~~~~~~~~g~~~~~~~-~~d~~-----~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 83 (324)
.+.|.+|++ .. +.-++....++.+..+ .++++.... ..|+. .++.+- ..+..+|++.++....-...-++
T Consensus 125 ~~~G~kV~lV~~D~~R~aA~eQLk~~a~~-~~vp~~~~~~~~dp~~i~~~~l~~~~-~~~~DvViIDTaGr~~~d~~lm~ 202 (429)
T TIGR01425 125 QRKGFKPCLVCADTFRAGAFDQLKQNATK-ARIPFYGSYTESDPVKIASEGVEKFK-KENFDIIIVDTSGRHKQEDSLFE 202 (429)
T ss_pred HHCCCCEEEEcCcccchhHHHHHHHHhhc-cCCeEEeecCCCCHHHHHHHHHHHHH-hCCCCEEEEECCCCCcchHHHHH
Confidence 355655443 33 3334555555545555 566654332 23542 333333 45678999988643222112234
Q ss_pred HHHHHH---HhcCCEEEEcCCC
Q 020548 84 ELSRLA---HDKGVTVVVDNTF 102 (324)
Q Consensus 84 ~i~~l~---~~~~~~~ivD~~~ 102 (324)
++.++. +...+++++|...
T Consensus 203 El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 203 EMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred HHHHHhhhcCCcEEEEEecccc
Confidence 454444 3345889999764
No 472
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=41.81 E-value=46 Score=26.37 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=23.7
Q ss_pred HHHHHHhhhc-CCceEEEEecCCCCccccc--------ChHHHHHHHHhcCCEEEE
Q 020548 52 HEMVNSAIVQ-GRTKVLYFESISNPTLAVA--------NIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 52 ~~~l~~~l~~-~~~~~v~~~~~~nptG~~~--------~~~~i~~l~~~~~~~~iv 98 (324)
++.+++.+.. .++++|++.+..+-.+.-. -+..+.++|+++|+.+++
T Consensus 129 ~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 129 LEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp HHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred HHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4566666644 4688888887555444311 245667778888876653
No 473
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=41.55 E-value=36 Score=25.47 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=30.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCC-----cccccC-----hHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNP-----TLAVAN-----IPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~np-----tG~~~~-----~~~i~~l~~~~~~~~ivD~~ 101 (324)
|++-+.+.+++.+++.+++..|-|. ||...+ .+.|.++|+++|+ =++|-.
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf-~v~D~s 96 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF-NVADFS 96 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT---EEE-T
T ss_pred HHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEecc
Confidence 6777777776788999999888885 554432 5688999999998 777754
No 474
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=41.54 E-value=59 Score=26.85 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHhhhcCC-ceEEEEecCCCCccccc-ChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGR-TKVLYFESISNPTLAVA-NIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~-~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~ivD~~ 101 (324)
++.+++++ ... +++|.+-..+.+.-... -.+++.++|+++|+.+|+++-
T Consensus 29 ~~~l~~al-~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~ 79 (221)
T PRK06512 29 AKLLRAAL-QGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD 79 (221)
T ss_pred HHHHHHHH-cCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH
Confidence 46677777 666 68888765544333332 356899999999999999874
No 475
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=41.25 E-value=57 Score=26.34 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.2
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
.+.+|+++-. |..|...+.+++.++|++||+.++.
T Consensus 152 ~p~avi~eil-~~dG~~~~~~~~~~fA~~~~l~~vs 186 (194)
T PF00926_consen 152 SPVAVICEIL-DDDGDMARRDELEEFAKKHGLPIVS 186 (194)
T ss_dssp -SBEEEEEBB-ETTSSBHCHHHHHHHHHHTT-EEEE
T ss_pred CCcEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 4566666654 6699999999999999999998873
No 476
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=41.22 E-value=53 Score=26.33 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=72.1
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
.++++.+.+ +-...+|.+..-.-+-- .+++++.+-.|+...++..|-+-..=.....+.|.|++..+++=+- +.
T Consensus 53 T~~ev~~l~-~aGadIIAlDaT~R~Rp--~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT---~~ 126 (192)
T PF04131_consen 53 TLKEVDALA-EAGADIIALDATDRPRP--ETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYT---PY 126 (192)
T ss_dssp SHHHHHHHH-HCT-SEEEEE-SSSS-S--S-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSS---TT
T ss_pred CHHHHHHHH-HcCCCEEEEecCCCCCC--cCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCC---CC
Confidence 678888888 77888999976433332 7889999999998888888864211112344569999998876543 22
Q ss_pred eeEEEEEcC-hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-Cccc--HHHHHHHHHHHHHHHHHHHH
Q 020548 131 IIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPH--LGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 131 r~~G~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~L~ 195 (324)
.- + ..| -++++.+..... ...-.|.-.++..+..++. +... +-..+.|-....+++.+.++
T Consensus 127 t~-~--~~pD~~lv~~l~~~~~-pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~It~~F~~ai~ 191 (192)
T PF04131_consen 127 TK-G--DGPDFELVRELVQADV-PVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQEITKRFVDAIK 191 (192)
T ss_dssp ST-T--SSHHHHHHHHHHHTTS-EEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHHHHHHHHHCH
T ss_pred CC-C--CCCCHHHHHHHHhCCC-cEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHHHHHHHHHHHHh
Confidence 32 4 222 246677765432 2223444444444444333 2222 23455555556666666554
No 477
>PRK06683 hypothetical protein; Provisional
Probab=41.06 E-value=93 Score=21.09 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.+...+++++++.++|++..-..+. -.+.+.++|+.++++++.-++
T Consensus 16 ~~~v~kaik~gkaklViiA~Da~~~----~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 16 HKRTLEAIKNGIVKEVVIAEDADMR----LTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred HHHHHHHHHcCCeeEEEEECCCCHH----HHHHHHHHHHhcCCCEEEECC
Confidence 4566667757889999985421111 347889999999999876554
No 478
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=40.46 E-value=2.3e+02 Score=26.88 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=58.0
Q ss_pred HccCCCCEEEEcCCCchhHHH---HHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEec-CC----C--Ccc--
Q 020548 10 QLCSSGGHVVAARTLYGGTHA---LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES-IS----N--PTL-- 77 (324)
Q Consensus 10 ~~~~~gd~vl~~~p~y~~~~~---~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~-~~----n--ptG-- 77 (324)
++.+.|--|++.+..+.-... .++.....+-+..+..-+..+.++.+.++ +....+|.+.. +. + .+|
T Consensus 255 ~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~-~aGaD~i~vg~g~G~~~~t~~~~~~g 333 (505)
T PLN02274 255 HLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI-QAGVDGLRVGMGSGSICTTQEVCAVG 333 (505)
T ss_pred HHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH-HcCcCEEEECCCCCccccCccccccC
Confidence 455666444444444432222 22222222113444444556788888877 66777877642 11 1 122
Q ss_pred --cccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEE
Q 020548 78 --AVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV 118 (324)
Q Consensus 78 --~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~ 118 (324)
....+..+.+++++.++.+|.|.-.. +-....+..|++.++
T Consensus 334 ~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~ 378 (505)
T PLN02274 334 RGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVM 378 (505)
T ss_pred CCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 12356678888999999999997531 111233456777555
No 479
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=40.43 E-value=2.2e+02 Score=23.88 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=12.6
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhH
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGT 28 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~ 28 (324)
+..+.....+.|..|++.+.+-+..
T Consensus 37 l~ia~~~a~~~~~~vly~SlEm~~~ 61 (259)
T PF03796_consen 37 LQIALNAALNGGYPVLYFSLEMSEE 61 (259)
T ss_dssp HHHHHHHHHTTSSEEEEEESSS-HH
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCHH
Confidence 3444444444456777776665443
No 480
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=40.29 E-value=2e+02 Score=23.22 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=59.9
Q ss_pred CEEEEcCCC--chhHHHHH-hhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 16 GHVVAARTL--YGGTHALL-THFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 16 d~vl~~~p~--y~~~~~~~-~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
.+|++..+. ++.....+ ..++.. .|.++++.-.+ .++++.+.+.+.++++|.++....+ ....++++.+..++
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~--~~~~~~~~i~~l~~ 161 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTT--TMYGQKDINDKLKE 161 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcccccc--CHHHHHHHHHHHHH
Confidence 355555533 44433332 233333 79999887555 6788888887788999998864333 24456788888877
Q ss_pred cC----CEEEEcCCCCcCCCC-ccCCCCcEEEeCC
Q 020548 92 KG----VTVVVDNTFSPLVLS-PARLGADVVVHSI 121 (324)
Q Consensus 92 ~~----~~~ivD~~~~~~~~~-~~~~~~d~~~~S~ 121 (324)
.+ +.+++=... +... ....|+|.+..+.
T Consensus 162 ~~~~~~v~i~vGG~~--~~~~~~~~~gad~~~~da 194 (197)
T TIGR02370 162 EGYRDSVKFMVGGAP--VTQDWADKIGADVYGENA 194 (197)
T ss_pred cCCCCCCEEEEEChh--cCHHHHHHhCCcEEeCCh
Confidence 63 556665432 1111 1233777766543
No 481
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=40.06 E-value=1.3e+02 Score=28.33 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHccCCCCEEEEcCCCchhH---HHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEec-CCC------Cccc
Q 020548 9 MQLCSSGGHVVAARTLYGGT---HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES-ISN------PTLA 78 (324)
Q Consensus 9 ~~~~~~gd~vl~~~p~y~~~---~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~-~~n------ptG~ 78 (324)
.++.+.|-.++..++.++.. ...++.......+..+.-=+..+.++.+.++ +-..++|.+.. |.. .+|.
T Consensus 247 ~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~-~aGad~I~vg~g~Gs~~~t~~~~~~ 325 (495)
T PTZ00314 247 AALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLI-DAGADGLRIGMGSGSICITQEVCAV 325 (495)
T ss_pred HHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHH-HcCCCEEEECCcCCcccccchhccC
Confidence 34566675555555443321 2233332222113344332445778887777 66777776532 211 1111
Q ss_pred c----cChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEE
Q 020548 79 V----ANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVV 118 (324)
Q Consensus 79 ~----~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~ 118 (324)
- ..+.++++.|+++++.+|.|.-. .+ -....+..|+|.++
T Consensus 326 g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm 371 (495)
T PTZ00314 326 GRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVM 371 (495)
T ss_pred CCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 1 23567888899999999999653 11 11234456888666
No 482
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=39.74 E-value=1.2e+02 Score=27.77 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=52.9
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEec--CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++++=+-+.+.+|..+.-...+..+..+ . .+++.--+ ..+++++.+.+....+.++.+.. |..|.+.+..+++
T Consensus 273 l~e~~~i~~iEdPl~~~D~eg~~~L~~~-~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~--~~iGGite~~~ia 349 (408)
T cd03313 273 LVKKYPIVSIEDPFDEDDWEGWAKLTAK-LGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKV--NQIGTLTETIEAI 349 (408)
T ss_pred HHHhCCcEEEEeCCCCcCHHHHHHHHHh-cCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcc--cccCCHHHHHHHH
Confidence 3444456678888876555555444333 3 23332212 12688888888444455555543 4568888889999
Q ss_pred HHHHhcCCEEEE
Q 020548 87 RLAHDKGVTVVV 98 (324)
Q Consensus 87 ~l~~~~~~~~iv 98 (324)
++|+++|+.+++
T Consensus 350 ~lA~~~G~~~~~ 361 (408)
T cd03313 350 KLAKKNGYGVVV 361 (408)
T ss_pred HHHHHcCCeEEc
Confidence 999999988764
No 483
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=39.70 E-value=92 Score=23.15 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHhhhcCCceEEEE-ecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 53 EMVNSAIVQGRTKVLYF-ESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 53 ~~l~~~l~~~~~~~v~~-~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.++...+.++++.++++ --|-|+--.-+|++++.++|.-|++++-..-+
T Consensus 65 QQiGa~Iaeg~id~lIFf~DPLtaqPHdpDVkAL~Rl~~V~nIP~A~N~a 114 (142)
T COG1803 65 QQIGALIAEGKIDVLIFFWDPLTAQPHDPDVKALLRLATVYNIPVATNRA 114 (142)
T ss_pred HHHHHHHhcCcceEEEEEecCCCCCCCCcCHHHHHHHHHhhcccchhhHh
Confidence 67777776777776655 56878777778999999999999988765543
No 484
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=39.63 E-value=82 Score=21.71 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=32.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHH-HHHHHHhcCCEEEEcC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE-LSRLAHDKGVTVVVDN 100 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~-i~~l~~~~~~~~ivD~ 100 (324)
-..+..+++...+.++|++..-.+|. .... +..+|++++++++.=.
T Consensus 19 G~~~v~k~l~~~~~~lvilA~d~~~~----~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 19 GIKEVLKALKKGKAKLVILAEDCSPD----SIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp SHHHHHHHHHTTCESEEEEETTSSSG----HHHHHHHHHHHHTTEEEEEES
T ss_pred chHHHHHHHHcCCCcEEEEcCCCChh----hhcccchhheeccceeEEEEC
Confidence 46677777867788999987644442 2334 7789999998876544
No 485
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=39.58 E-value=2.3e+02 Score=27.69 Aligned_cols=73 Identities=12% Similarity=-0.014 Sum_probs=46.5
Q ss_pred HHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 7 VLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 7 ~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
.+..+ +++||+|.+.-|.-..+...+-... + .|.....++.. ..+++...+++-+++++++.......|...+
T Consensus 108 ~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~ 182 (647)
T PTZ00237 108 VLLNLNISKNDNVLIYMANTLEPLIAMLSCA-R-IGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIIT 182 (647)
T ss_pred HHHHcCCCCCCEEEEECCCCHHHHHHHHHHH-H-hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceec
Confidence 34333 7899999888876665554442222 3 67766666554 7888888886678889887654333344433
No 486
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=39.42 E-value=69 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
.+..|+++- -|..|.....+++.++|++||..++
T Consensus 172 ~P~~vicEi-l~~dG~ma~~~~l~~fA~~~~l~ii 205 (230)
T PRK00014 172 RPAGVLCEL-MNADGTMMRGASLERYAAKEGLVAL 205 (230)
T ss_pred CceEEEEEE-eCCCCCccCHHHHHHHHHHcCCcEE
Confidence 345566554 5778999999999999999998876
No 487
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=39.36 E-value=55 Score=23.09 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.++..+++++.+.++|++..-..+ .-.+.+..+|++++++++.-
T Consensus 21 ~~~v~kai~~gkaklViiA~D~~~----~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 21 SKRTIKAIKLGKAKLVIVASNCPK----DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEE
Confidence 456667775678889988642111 22478889999999887553
No 488
>PRK00077 eno enolase; Provisional
Probab=39.30 E-value=1.7e+02 Score=26.94 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=53.9
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++++=+-+.+.+|..+.-...+..+..+ .| +++.--+. .++..+.+.+....+.++.+.. |..|.+.+..+++
T Consensus 273 l~e~y~i~~iEdPl~~~D~~g~~~L~~~-~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~--~~~GGitea~~ia 349 (425)
T PRK00077 273 LVDKYPIVSIEDGLDENDWEGWKLLTEK-LGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKV--NQIGTLTETLDAI 349 (425)
T ss_pred HHhhCCcEEEEcCCCCccHHHHHHHHHh-cCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCc--cccCCHHHHHHHH
Confidence 3444456788888876555555444433 32 33322221 2688888888445556665543 5578888899999
Q ss_pred HHHHhcCCEEEE
Q 020548 87 RLAHDKGVTVVV 98 (324)
Q Consensus 87 ~l~~~~~~~~iv 98 (324)
++|+++|+.+++
T Consensus 350 ~lA~~~gi~~~v 361 (425)
T PRK00077 350 ELAKRAGYTAVV 361 (425)
T ss_pred HHHHHcCCeEEE
Confidence 999999986554
No 489
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.97 E-value=1.5e+02 Score=21.58 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=41.5
Q ss_pred hhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc---CCEEEEcC
Q 020548 34 HFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK---GVTVVVDN 100 (324)
Q Consensus 34 ~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~---~~~~ivD~ 100 (324)
.++.. .|.++.+.-.+ .++++.++..+.++++|.++.... -....++++++..++. ++.+++=.
T Consensus 21 ~~l~~-~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~--~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 21 RALRD-AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG--GHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch--hhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 34434 79999887654 567777776577889999876532 2334567777777776 44555443
No 490
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=38.95 E-value=1.5e+02 Score=21.50 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=45.3
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---CCHHHHHHhhhcCCceEEEEec-CCCCcccccChHHHHHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~l~~~~~~~v~~~~-~~nptG~~~~~~~i~~l~~ 90 (324)
|=++..+..++.-... ..|+++..+.. ..-+++.+.+...++.+|+... |....+...|-..|++.|-
T Consensus 27 Gf~i~AT~gTa~~L~~--------~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~ 98 (115)
T cd01422 27 RHRLVATGTTGLLIQE--------ATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCD 98 (115)
T ss_pred CCEEEEechHHHHHHH--------hhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHH
Confidence 6666655544333221 13565554422 2225566777577888776553 2133333557889999999
Q ss_pred hcCCEEEE
Q 020548 91 DKGVTVVV 98 (324)
Q Consensus 91 ~~~~~~iv 98 (324)
+++++++.
T Consensus 99 ~~~Ip~~T 106 (115)
T cd01422 99 VYNIPLAT 106 (115)
T ss_pred HcCCCEEE
Confidence 99998874
No 491
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=38.85 E-value=1.1e+02 Score=19.70 Aligned_cols=54 Identities=7% Similarity=-0.034 Sum_probs=30.9
Q ss_pred cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 40 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.|+++..+... .+.+. ..+..++++.+..+.+- ..+.++|.++.++=|-++|+|
T Consensus 17 ~g~~v~~~~~~-~~~l~----~~~~tll~i~~~~~~~~-~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 17 QGVKVERWRKP-YEALE----ADDGTLLVIGPDLRLSE-PEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred CCCeeEEeccc-HHHhC----CCCCEEEEEeCCCCCCc-hHHHHHHHHHHHcCCEEEEeC
Confidence 58888766532 33332 23444555443323221 356789999998777777764
No 492
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=38.70 E-value=2.1e+02 Score=27.29 Aligned_cols=82 Identities=18% Similarity=0.024 Sum_probs=55.3
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 92 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 92 (324)
+||+|++.-|.-+.....+-... + .|.-...+-. -..++++.-+.+-..|+++........|...++.+..+.+...
T Consensus 64 kGDrV~iymp~~pe~~~a~LA~~-r-iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~ 141 (528)
T COG0365 64 KGDRVAIYMPNSPEAVIALLATA-R-IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS 141 (528)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHH-H-cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc
Confidence 89999999987776665553222 3 4654433322 3688888888677889999888888889988776655554433
Q ss_pred CCEEEEc
Q 020548 93 GVTVVVD 99 (324)
Q Consensus 93 ~~~~ivD 99 (324)
.++++
T Consensus 142 --~iv~~ 146 (528)
T COG0365 142 --VVVVP 146 (528)
T ss_pred --eEEec
Confidence 44443
No 493
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=38.61 E-value=2.6e+02 Score=27.09 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=49.0
Q ss_pred HHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChH
Q 020548 6 SVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 6 ~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 83 (324)
..++.+ +++||+|.+..|.-..+...+-... + .|.....++.. ..+++...+++-++++++........|...+..
T Consensus 98 ~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~ 175 (628)
T TIGR02316 98 SALRALGVGRGDRVLIYMPMIAEAVFAMLACA-R-IGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYK 175 (628)
T ss_pred HHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH-H-hCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccH
Confidence 334443 6799999888876655544442222 3 67766666544 678888888666788888765444445555544
Q ss_pred HHH
Q 020548 84 ELS 86 (324)
Q Consensus 84 ~i~ 86 (324)
+..
T Consensus 176 ~~~ 178 (628)
T TIGR02316 176 PLL 178 (628)
T ss_pred HHH
Confidence 433
No 494
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=38.56 E-value=74 Score=25.82 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
.+.+|+++- -|..|.....+++.++|++||..++
T Consensus 157 ~p~~vicEi-l~~dG~m~~~~~~~~fA~~~~l~~i 190 (199)
T TIGR00506 157 KPAGVICEM-MNDDGTMARKPELMEYAKKHNLKLI 190 (199)
T ss_pred CceEEEEEE-eCCCCCccCHHHHHHHHHHcCCcEE
Confidence 355666665 4668999999999999999998876
No 495
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=38.50 E-value=34 Score=23.79 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=44.1
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEe----cCCCH-H---HHHHhhhcCCceEEEEecCCCCccc
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV----DISDH-E---MVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~----~~~d~-~---~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
.++.+.+-|=+|+.+..++ ..++ . .|+++..+ ...+. + ++.+.++..++.+|+... ......
T Consensus 5 ~a~~l~~lG~~i~AT~gTa----~~L~----~-~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~-~~~~~~ 74 (95)
T PF02142_consen 5 LAKRLAELGFEIYATEGTA----KFLK----E-HGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP-YPFSDQ 74 (95)
T ss_dssp HHHHHHHTTSEEEEEHHHH----HHHH----H-TT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE---THHHH
T ss_pred HHHHHHHCCCEEEEChHHH----HHHH----H-cCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC-CCCccc
Confidence 3445556676777665544 3332 2 67773332 22211 2 266677677888776553 222222
Q ss_pred cc-ChHHHHHHHHhcCCEEE
Q 020548 79 VA-NIPELSRLAHDKGVTVV 97 (324)
Q Consensus 79 ~~-~~~~i~~l~~~~~~~~i 97 (324)
.. +-..|++.|-++++.++
T Consensus 75 ~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 75 EHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HTHHHHHHHHHHHHTTSHEE
T ss_pred ccCCcHHHHHHHHHcCCCCc
Confidence 23 67789999999998765
No 496
>PRK11823 DNA repair protein RadA; Provisional
Probab=38.34 E-value=2.9e+02 Score=25.69 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=35.0
Q ss_pred cCCCHHHHHHhhhcCCceEEEEecCCCCc--------ccccC----hHHHHHHHHhcCCEEEE
Q 020548 48 DISDHEMVNSAIVQGRTKVLYFESISNPT--------LAVAN----IPELSRLAHDKGVTVVV 98 (324)
Q Consensus 48 ~~~d~~~l~~~l~~~~~~~v~~~~~~npt--------G~~~~----~~~i~~l~~~~~~~~iv 98 (324)
...+++++.+.+.+.++++|++.+.++.. |.... +.+|.++++++|+.+++
T Consensus 141 ~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvil 203 (446)
T PRK11823 141 AETNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFL 203 (446)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34578888888856689999999866432 22222 23678889999986654
No 497
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=38.03 E-value=1.1e+02 Score=22.03 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=37.0
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
+++++++.+ ..++..+++.+. .+|.+.-.++..+++++.++-+++-
T Consensus 50 ~~eEle~~l-ee~~E~ivvGTG--~~G~l~l~~ea~e~~r~k~~~vi~~ 95 (121)
T COG1504 50 ALEELEELL-EEGPEVIVVGTG--QSGMLELSEEAREFFRKKGCEVIEL 95 (121)
T ss_pred CHHHHHHHH-hcCCcEEEEecC--ceeEEEeCHHHHHHHHhcCCeEEEe
Confidence 799999999 788888887653 5677777788999999998776654
No 498
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.95 E-value=1.5e+02 Score=21.27 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=40.3
Q ss_pred cceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc--CCEEEEcCCC
Q 020548 40 CNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF 102 (324)
Q Consensus 40 ~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~ 102 (324)
.|.++.+.... ..+++.+.+...++++|.++..... ....++.+.++.++. ++.+++=..+
T Consensus 26 ~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~--~~~~~~~~~~~~~~~p~~~~ivvGG~~ 89 (125)
T cd02065 26 NGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTT--HMEAMKLVIEALKELGIDIPVVVGGAH 89 (125)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHh--HHHHHHHHHHHHHhcCCCCeEEEeCCc
Confidence 68888887654 5567777765678999998753221 223455666666666 5888887754
No 499
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.81 E-value=2.1e+02 Score=25.48 Aligned_cols=76 Identities=22% Similarity=0.131 Sum_probs=43.9
Q ss_pred eeEEEecCCCHHHHHHhhhcCCceEEE-------EecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCC--CcCCCC
Q 020548 42 ITTTFVDISDHEMVNSAIVQGRTKVLY-------FESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTF--SPLVLS 108 (324)
Q Consensus 42 ~~~~~~~~~d~~~l~~~l~~~~~~~v~-------~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~--~~~~~~ 108 (324)
..+.-=+..+.+..+.++ +...++|- +|+-.-.+|.-.| +.+.++.++++|+.+|.|.-. .+-...
T Consensus 152 ~~vIaGNV~T~e~a~~Li-~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~K 230 (346)
T PRK05096 152 KTICAGNVVTGEMVEELI-LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAK 230 (346)
T ss_pred CcEEEecccCHHHHHHHH-HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHH
Confidence 334333344777777776 54445543 2222334444433 567788889999999999753 111123
Q ss_pred ccCCCCcEEE
Q 020548 109 PARLGADVVV 118 (324)
Q Consensus 109 ~~~~~~d~~~ 118 (324)
.+..|+|.++
T Consensus 231 AlaaGAd~VM 240 (346)
T PRK05096 231 AFGGGADFVM 240 (346)
T ss_pred HHHcCCCEEE
Confidence 3455888766
No 500
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.77 E-value=2.2e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 49 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
..+.++.++++ +-..+.++.. ..| .++.+.|+++|++++--
T Consensus 67 Vl~~~~a~~a~-~aGA~FivsP-~~~--------~~v~~~~~~~~i~~iPG 107 (204)
T TIGR01182 67 VLNPEQLRQAV-DAGAQFIVSP-GLT--------PELAKHAQDHGIPIIPG 107 (204)
T ss_pred CCCHHHHHHHH-HcCCCEEECC-CCC--------HHHHHHHHHcCCcEECC
Confidence 34788888877 5555665422 222 58999999999987763
Done!