Query 020548
Match_columns 324
No_of_seqs 204 out of 2527
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndn_A O-succinylhomoserine su 100.0 1.1E-43 3.8E-48 320.6 31.4 298 1-313 106-413 (414)
2 3ri6_A O-acetylhomoserine sulf 100.0 4.4E-44 1.5E-48 323.9 27.8 300 1-314 107-430 (430)
3 3nmy_A Xometc, cystathionine g 100.0 3.7E-43 1.3E-47 315.8 29.7 299 1-314 92-397 (400)
4 1qgn_A Protein (cystathionine 100.0 6.8E-42 2.3E-46 310.5 33.9 301 2-316 140-445 (445)
5 2fq6_A Cystathionine beta-lyas 100.0 1.7E-41 5.8E-46 306.1 28.2 298 1-316 107-414 (415)
6 3qhx_A Cystathionine gamma-syn 100.0 2.4E-40 8.1E-45 297.4 32.8 295 1-313 91-391 (392)
7 3acz_A Methionine gamma-lyase; 100.0 3.2E-40 1.1E-44 296.4 31.7 300 2-315 85-388 (389)
8 3cog_A Cystathionine gamma-lya 100.0 1.6E-39 5.3E-44 293.0 34.4 302 2-318 93-400 (403)
9 1n8p_A Cystathionine gamma-lya 100.0 2.4E-39 8.1E-44 291.0 28.7 300 2-317 81-392 (393)
10 1e5e_A MGL, methionine gamma-l 100.0 1.8E-38 6.1E-43 286.3 32.4 303 2-318 88-397 (404)
11 1gc0_A Methionine gamma-lyase; 100.0 4E-38 1.4E-42 283.8 31.6 301 2-316 91-397 (398)
12 2ctz_A O-acetyl-L-homoserine s 100.0 2.6E-37 8.9E-42 280.2 28.8 303 2-313 84-420 (421)
13 2rfv_A Methionine gamma-lyase; 100.0 1.5E-36 5.1E-41 273.6 32.7 301 2-316 90-396 (398)
14 2cb1_A O-acetyl homoserine sul 100.0 4.2E-36 1.4E-40 271.7 33.7 299 2-315 82-411 (412)
15 1ibj_A CBL, cystathionine beta 100.0 6.8E-36 2.3E-40 273.0 30.4 299 2-316 159-462 (464)
16 1pff_A Methionine gamma-lyase; 100.0 1.1E-35 3.9E-40 261.2 28.5 301 2-316 24-330 (331)
17 1cs1_A CGS, protein (cystathio 100.0 3E-34 1E-38 257.5 34.4 300 2-317 78-384 (386)
18 3jzl_A Putative cystathionine 100.0 1E-29 3.5E-34 228.1 24.4 295 2-316 88-408 (409)
19 3i16_A Aluminum resistance pro 100.0 1.2E-29 4.3E-34 228.3 24.2 295 2-316 102-425 (427)
20 3hvy_A Cystathionine beta-lyas 100.0 1.4E-29 4.9E-34 227.9 24.5 295 2-316 103-425 (427)
21 1b5p_A Protein (aspartate amin 100.0 1.5E-29 5.1E-34 226.8 24.1 219 2-247 102-342 (385)
22 3ly1_A Putative histidinol-pho 100.0 1.2E-28 4.1E-33 218.3 24.2 253 2-317 79-349 (354)
23 3aow_A Putative uncharacterize 100.0 7.8E-29 2.7E-33 226.3 23.1 220 2-248 151-398 (448)
24 3op7_A Aminotransferase class 100.0 1.8E-28 6.2E-33 218.9 24.3 218 2-246 92-326 (375)
25 3get_A Histidinol-phosphate am 100.0 6.2E-29 2.1E-33 221.1 21.2 252 2-316 93-363 (365)
26 2z61_A Probable aspartate amin 100.0 3.5E-28 1.2E-32 216.7 25.8 212 2-247 100-325 (370)
27 3ffh_A Histidinol-phosphate am 100.0 6E-28 2E-32 214.6 25.3 251 2-315 95-361 (363)
28 1o4s_A Aspartate aminotransfer 100.0 7.2E-28 2.5E-32 216.1 26.0 215 2-247 112-345 (389)
29 3a2b_A Serine palmitoyltransfe 100.0 1.1E-27 3.9E-32 215.5 27.0 262 2-317 114-389 (398)
30 1fg7_A Histidinol phosphate am 100.0 7.2E-28 2.5E-32 213.6 24.5 250 2-316 86-354 (356)
31 1gd9_A Aspartate aminotransfer 100.0 2.8E-28 9.6E-33 218.7 21.5 219 2-247 98-340 (389)
32 1u08_A Hypothetical aminotrans 100.0 3.5E-28 1.2E-32 217.9 22.0 219 2-247 102-342 (386)
33 1yiz_A Kynurenine aminotransfe 100.0 4.9E-28 1.7E-32 220.0 23.2 219 2-247 112-378 (429)
34 3h14_A Aminotransferase, class 100.0 5.2E-28 1.8E-32 217.2 23.0 216 2-247 102-335 (391)
35 3b46_A Aminotransferase BNA3; 100.0 4.5E-28 1.5E-32 221.4 22.9 207 2-235 129-369 (447)
36 2r2n_A Kynurenine/alpha-aminoa 100.0 7.4E-28 2.5E-32 218.6 23.9 207 2-235 119-362 (425)
37 1j32_A Aspartate aminotransfer 100.0 5.4E-28 1.8E-32 216.8 22.7 219 2-247 101-343 (388)
38 2x5d_A Probable aminotransfera 100.0 9E-28 3.1E-32 217.1 24.3 218 2-246 110-351 (412)
39 1iay_A ACC synthase 2, 1-amino 100.0 2.9E-27 1E-31 214.8 27.6 262 2-316 119-423 (428)
40 3dzz_A Putative pyridoxal 5'-p 100.0 9.5E-28 3.2E-32 215.3 23.8 220 2-246 96-342 (391)
41 3fvs_A Kynurenine--oxoglutarat 100.0 6.6E-28 2.2E-32 218.6 22.9 206 2-234 102-345 (422)
42 3nra_A Aspartate aminotransfer 100.0 1.4E-27 4.7E-32 215.4 24.4 216 2-247 113-359 (407)
43 1vp4_A Aminotransferase, putat 100.0 3.3E-28 1.1E-32 220.9 20.3 267 2-319 120-421 (425)
44 2dou_A Probable N-succinyldiam 100.0 2E-28 6.7E-33 218.8 18.4 219 2-248 98-334 (376)
45 3g0t_A Putative aminotransfera 100.0 3.1E-28 1.1E-32 221.7 20.0 262 2-317 116-434 (437)
46 3ele_A Amino transferase; RER0 100.0 3E-27 1E-31 212.7 25.5 216 2-248 110-354 (398)
47 2o0r_A RV0858C (N-succinyldiam 100.0 1.3E-27 4.6E-32 215.9 23.3 218 2-246 97-338 (411)
48 3p1t_A Putative histidinol-pho 100.0 3.9E-27 1.3E-31 207.2 25.6 247 2-317 79-334 (337)
49 3jtx_A Aminotransferase; NP_28 100.0 9E-28 3.1E-32 215.9 21.8 216 2-246 102-345 (396)
50 1v2d_A Glutamine aminotransfer 100.0 2.1E-27 7.3E-32 212.4 23.6 208 2-236 89-317 (381)
51 2o1b_A Aminotransferase, class 100.0 3.2E-28 1.1E-32 219.5 18.3 219 2-247 120-357 (404)
52 2zyj_A Alpha-aminodipate amino 100.0 1.3E-27 4.3E-32 215.1 21.9 220 2-248 102-346 (397)
53 3e2y_A Kynurenine-oxoglutarate 100.0 2.4E-27 8.1E-32 214.1 23.8 206 2-234 96-338 (410)
54 1c7n_A Cystalysin; transferase 100.0 1.7E-27 5.8E-32 214.3 22.5 221 2-247 100-347 (399)
55 3tqx_A 2-amino-3-ketobutyrate 100.0 5.7E-27 2E-31 210.7 25.8 262 2-318 114-394 (399)
56 3hdo_A Histidinol-phosphate am 100.0 1.3E-27 4.4E-32 212.3 21.2 256 2-318 93-353 (360)
57 2dr1_A PH1308 protein, 386AA l 100.0 4.7E-27 1.6E-31 210.3 24.4 264 2-316 82-375 (386)
58 3euc_A Histidinol-phosphate am 100.0 1.7E-27 5.9E-32 211.9 21.4 252 2-316 96-364 (367)
59 3cq5_A Histidinol-phosphate am 100.0 2.3E-27 7.8E-32 211.4 22.2 249 2-316 103-364 (369)
60 2zc0_A Alanine glyoxylate tran 100.0 3.8E-27 1.3E-31 212.6 23.6 220 2-248 109-356 (407)
61 1bs0_A Protein (8-amino-7-oxon 100.0 6E-27 2.1E-31 209.7 24.5 259 2-316 110-383 (384)
62 3dyd_A Tyrosine aminotransfera 100.0 3.1E-27 1.1E-31 214.6 22.7 217 2-246 129-379 (427)
63 3kax_A Aminotransferase, class 100.0 7.1E-27 2.4E-31 209.0 24.7 220 2-247 93-339 (383)
64 1fc4_A 2-amino-3-ketobutyrate 100.0 7.4E-27 2.5E-31 210.3 24.9 260 3-317 117-394 (401)
65 3piu_A 1-aminocyclopropane-1-c 100.0 9.7E-27 3.3E-31 211.9 25.4 219 2-247 122-385 (435)
66 1xi9_A Putative transaminase; 100.0 4.5E-27 1.5E-31 212.2 22.9 218 2-247 112-357 (406)
67 4dq6_A Putative pyridoxal phos 100.0 2.8E-27 9.6E-32 212.2 21.3 220 2-248 101-348 (391)
68 2w8t_A SPT, serine palmitoyltr 100.0 7.3E-27 2.5E-31 212.2 23.9 260 3-316 136-411 (427)
69 3t18_A Aminotransferase class 100.0 1.2E-26 4.2E-31 209.7 25.3 255 2-317 112-411 (413)
70 1lc5_A COBD, L-threonine-O-3-p 100.0 7E-27 2.4E-31 207.9 22.7 252 2-316 87-356 (364)
71 3kki_A CAI-1 autoinducer synth 100.0 1.9E-26 6.4E-31 208.3 25.6 261 2-319 130-403 (409)
72 3fdb_A Beta C-S lyase, putativ 100.0 1.6E-27 5.3E-32 212.9 18.0 207 2-235 92-318 (377)
73 2gb3_A Aspartate aminotransfer 100.0 1.2E-26 4.1E-31 209.6 22.7 217 2-247 113-348 (409)
74 3ezs_A Aminotransferase ASPB; 100.0 5.5E-27 1.9E-31 209.3 20.1 256 2-316 93-371 (376)
75 2x5f_A Aspartate_tyrosine_phen 100.0 3.8E-27 1.3E-31 214.2 19.3 219 2-247 124-388 (430)
76 3ppl_A Aspartate aminotransfer 100.0 1.2E-26 4.2E-31 210.7 22.1 219 2-248 106-371 (427)
77 3l8a_A METC, putative aminotra 99.9 5.5E-27 1.9E-31 212.6 19.4 221 2-247 130-376 (421)
78 1d2f_A MALY protein; aminotran 99.9 2.7E-26 9.4E-31 205.9 23.3 220 2-247 98-343 (390)
79 3ftb_A Histidinol-phosphate am 99.9 2.5E-26 8.4E-31 203.9 22.6 251 2-317 89-358 (361)
80 1bw0_A TAT, protein (tyrosine 99.9 1.5E-26 5.2E-31 209.3 21.2 219 2-246 115-368 (416)
81 1vjo_A Alanine--glyoxylate ami 99.9 1.4E-26 4.8E-31 207.9 20.6 264 2-316 96-391 (393)
82 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 3.9E-27 1.3E-31 209.8 16.6 263 2-317 80-367 (371)
83 3rq1_A Aminotransferase class 99.9 8.2E-26 2.8E-30 204.6 25.3 218 2-247 113-376 (418)
84 3qgu_A LL-diaminopimelate amin 99.9 5.4E-27 1.8E-31 214.4 16.1 218 2-247 143-394 (449)
85 3zrp_A Serine-pyruvate aminotr 99.9 1.9E-25 6.4E-30 199.7 24.8 264 2-316 65-359 (384)
86 3tcm_A Alanine aminotransferas 99.9 9.5E-26 3.3E-30 208.6 23.2 196 2-205 168-412 (500)
87 1elu_A L-cysteine/L-cystine C- 99.9 2.4E-26 8.2E-31 206.0 18.6 263 2-316 87-388 (390)
88 3isl_A Purine catabolism prote 99.9 1.5E-25 5E-30 202.6 23.9 223 2-247 73-343 (416)
89 3nnk_A Ureidoglycine-glyoxylat 99.9 1.1E-25 3.9E-30 203.0 23.1 265 2-316 75-386 (411)
90 3ihj_A Alanine aminotransferas 99.9 1E-25 3.4E-30 208.1 23.0 196 2-205 164-411 (498)
91 3ht4_A Aluminum resistance pro 99.9 1.2E-25 4.2E-30 203.3 22.6 297 2-318 94-416 (431)
92 1kmj_A Selenocysteine lyase; p 99.9 1E-25 3.4E-30 202.9 21.7 272 2-317 96-402 (406)
93 1t3i_A Probable cysteine desul 99.9 6.8E-26 2.3E-30 205.0 20.7 276 2-317 101-410 (420)
94 2bwn_A 5-aminolevulinate synth 99.9 6.6E-25 2.3E-29 197.6 26.5 249 13-317 130-397 (401)
95 3cai_A Possible aminotransfera 99.9 4.7E-26 1.6E-30 205.4 18.7 270 2-316 97-405 (406)
96 3f6t_A Aspartate aminotransfer 99.9 1.2E-25 4E-30 209.3 21.9 133 2-141 175-330 (533)
97 3fkd_A L-threonine-O-3-phospha 99.9 5.9E-26 2E-30 200.7 18.9 253 2-318 78-340 (350)
98 3ez1_A Aminotransferase MOCR f 99.9 1.1E-25 3.8E-30 204.1 20.9 265 2-317 98-416 (423)
99 3d6k_A Putative aminotransfera 99.9 2.1E-25 7.3E-30 202.2 22.2 215 5-247 109-368 (422)
100 7aat_A Aspartate aminotransfer 99.9 2.1E-25 7E-30 200.9 21.5 190 2-198 107-337 (401)
101 3kgw_A Alanine-glyoxylate amin 99.9 5.1E-25 1.8E-29 197.4 23.8 225 2-248 85-342 (393)
102 3g7q_A Valine-pyruvate aminotr 99.9 2.7E-25 9.2E-30 201.1 21.3 222 2-248 109-362 (417)
103 4eu1_A Mitochondrial aspartate 99.9 2.2E-25 7.6E-30 201.2 20.5 185 7-198 123-345 (409)
104 3f9t_A TDC, L-tyrosine decarbo 99.9 5.4E-25 1.8E-29 197.4 20.6 253 2-316 97-394 (397)
105 2zy4_A L-aspartate beta-decarb 99.9 6.6E-25 2.3E-29 204.4 21.6 141 2-147 176-339 (546)
106 2z9v_A Aspartate aminotransfer 99.9 1.4E-24 4.7E-29 194.8 22.8 269 2-317 70-368 (392)
107 2ch1_A 3-hydroxykynurenine tra 99.9 5.4E-25 1.9E-29 197.7 20.2 223 2-247 80-336 (396)
108 3if2_A Aminotransferase; YP_26 99.9 5.5E-25 1.9E-29 200.7 20.4 223 2-248 117-388 (444)
109 3lvm_A Cysteine desulfurase; s 99.9 8E-25 2.7E-29 198.3 21.2 277 2-316 96-395 (423)
110 4f4e_A Aromatic-amino-acid ami 99.9 1.3E-24 4.6E-29 196.8 22.3 190 2-197 128-355 (420)
111 3k7y_A Aspartate aminotransfer 99.9 1.6E-24 5.6E-29 194.6 22.3 191 2-199 108-341 (405)
112 1eg5_A Aminotransferase; PLP-d 99.9 8.7E-25 3E-29 195.3 20.4 278 2-316 72-372 (384)
113 3asa_A LL-diaminopimelate amin 99.9 1.7E-25 5.9E-30 201.4 15.8 217 2-246 106-346 (400)
114 2huf_A Alanine glyoxylate amin 99.9 1.6E-24 5.6E-29 194.4 22.0 223 2-247 81-336 (393)
115 1uu1_A Histidinol-phosphate am 99.9 6.3E-25 2.1E-29 193.0 18.9 206 2-248 87-302 (335)
116 1m32_A 2-aminoethylphosphonate 99.9 1.1E-24 3.7E-29 193.4 19.6 264 2-317 67-362 (366)
117 3bwn_A AT1G70560, L-tryptophan 99.9 3.2E-25 1.1E-29 199.0 16.2 183 2-198 102-302 (391)
118 1iug_A Putative aspartate amin 99.9 1.4E-24 4.8E-29 191.8 19.9 260 2-316 62-344 (352)
119 3ei9_A LL-diaminopimelate amin 99.9 9.8E-25 3.3E-29 198.4 19.3 219 2-246 130-381 (432)
120 4hvk_A Probable cysteine desul 99.9 1.4E-24 4.7E-29 193.7 19.2 276 2-316 71-369 (382)
121 3f0h_A Aminotransferase; RER07 99.9 1.2E-24 4.1E-29 194.1 18.8 265 2-319 82-373 (376)
122 3meb_A Aspartate aminotransfer 99.9 2.1E-24 7.2E-29 197.1 20.0 194 2-198 130-372 (448)
123 4eb5_A Probable cysteine desul 99.9 3.7E-24 1.3E-28 191.2 20.7 274 2-314 71-367 (382)
124 3fsl_A Aromatic-amino-acid ami 99.9 5.3E-24 1.8E-28 191.3 21.7 191 2-198 106-334 (397)
125 3ffr_A Phosphoserine aminotran 99.9 1.8E-24 6.2E-29 191.7 17.4 258 2-317 72-361 (362)
126 1jg8_A L-ALLO-threonine aldola 99.9 1.7E-24 5.9E-29 191.0 16.7 254 2-316 64-342 (347)
127 3vax_A Putative uncharacterize 99.9 2.1E-24 7.1E-29 194.1 17.3 278 2-317 91-397 (400)
128 3b1d_A Betac-S lyase; HET: PLP 99.9 4.8E-27 1.7E-31 211.0 0.0 222 1-247 99-347 (392)
129 2yrr_A Aminotransferase, class 99.9 5.6E-24 1.9E-28 187.9 19.4 221 2-248 63-308 (353)
130 1ajs_A Aspartate aminotransfer 99.9 8.3E-24 2.8E-28 191.1 20.6 189 2-198 110-345 (412)
131 3e9k_A Kynureninase; kynurenin 99.9 4.5E-24 1.5E-28 195.9 18.5 267 2-320 139-461 (465)
132 1yaa_A Aspartate aminotransfer 99.9 7.5E-24 2.6E-28 191.4 19.1 190 2-198 109-345 (412)
133 2bkw_A Alanine-glyoxylate amin 99.9 6.8E-23 2.3E-27 183.1 24.8 264 2-317 70-381 (385)
134 2q7w_A Aspartate aminotransfer 99.9 5.5E-24 1.9E-28 191.2 17.7 189 2-198 105-333 (396)
135 2aeu_A Hypothetical protein MJ 99.9 6.3E-24 2.1E-28 189.4 16.7 139 2-151 87-233 (374)
136 2ay1_A Aroat, aromatic amino a 99.9 7.2E-24 2.5E-28 190.3 17.2 191 2-198 102-330 (394)
137 1b9h_A AHBA synthase, protein 99.9 8.1E-23 2.8E-27 183.1 23.0 282 2-317 64-385 (388)
138 2eh6_A Acoat, acetylornithine 99.9 1.2E-23 4.1E-28 187.6 17.3 251 2-315 97-373 (375)
139 3ruy_A Ornithine aminotransfer 99.9 1.6E-23 5.4E-28 188.0 16.5 254 2-316 104-390 (392)
140 1qz9_A Kynureninase; kynurenin 99.9 5.8E-23 2E-27 185.6 20.1 259 2-316 99-398 (416)
141 3uwc_A Nucleotide-sugar aminot 99.9 2.2E-22 7.7E-27 179.3 23.2 285 2-321 64-372 (374)
142 3frk_A QDTB; aminotransferase, 99.9 7.8E-23 2.7E-27 182.3 20.0 280 2-318 62-366 (373)
143 3nyt_A Aminotransferase WBPE; 99.9 2.9E-22 1E-26 178.2 23.0 279 2-317 61-361 (367)
144 1mdo_A ARNB aminotransferase; 99.9 2.8E-22 9.7E-27 179.8 22.8 282 2-319 65-385 (393)
145 4adb_A Succinylornithine trans 99.9 3.8E-23 1.3E-27 186.3 15.6 224 2-248 107-360 (406)
146 2oga_A Transaminase; PLP-depen 99.9 1.1E-21 3.6E-26 176.6 24.7 185 2-197 89-294 (399)
147 3dr4_A Putative perosamine syn 99.9 4.3E-22 1.5E-26 178.6 22.1 279 2-316 82-389 (391)
148 1v72_A Aldolase; PLP-dependent 99.9 7.3E-22 2.5E-26 174.6 22.5 250 2-318 70-351 (356)
149 3lws_A Aromatic amino acid bet 99.9 7.5E-23 2.6E-27 181.3 16.1 260 2-318 73-354 (357)
150 4h51_A Aspartate aminotransfer 99.9 4.4E-23 1.5E-27 185.4 14.5 190 4-199 126-353 (420)
151 2hox_A ALLIIN lyase 1; cystein 99.9 3.7E-23 1.3E-27 187.5 14.0 180 2-197 134-336 (427)
152 1vef_A Acetylornithine/acetyl- 99.9 7.2E-23 2.5E-27 183.9 15.1 255 2-316 115-393 (395)
153 3mad_A Sphingosine-1-phosphate 99.9 2.3E-22 7.9E-27 186.7 18.7 258 2-319 171-472 (514)
154 2ord_A Acoat, acetylornithine 99.9 2.9E-23 9.8E-28 186.6 12.0 251 2-316 108-393 (397)
155 1wyu_B Glycine dehydrogenase s 99.9 1.3E-22 4.3E-27 186.5 15.8 253 12-317 148-438 (474)
156 2dkj_A Serine hydroxymethyltra 99.9 3.5E-22 1.2E-26 180.0 18.1 217 3-248 97-334 (407)
157 2c81_A Glutamine-2-deoxy-scyll 99.9 2.6E-21 8.8E-26 175.1 23.6 288 2-319 68-413 (418)
158 3pj0_A LMO0305 protein; struct 99.9 2E-22 6.9E-27 178.6 16.0 261 2-318 74-357 (359)
159 3ju7_A Putative PLP-dependent 99.9 7.1E-22 2.4E-26 176.2 19.5 282 2-318 64-373 (377)
160 2c0r_A PSAT, phosphoserine ami 99.9 8.8E-23 3E-27 181.2 12.6 251 2-317 79-358 (362)
161 1svv_A Threonine aldolase; str 99.9 1.5E-21 5.3E-26 172.6 20.4 254 2-317 77-355 (359)
162 2pb2_A Acetylornithine/succiny 99.9 2.5E-22 8.6E-27 181.8 15.4 258 2-315 125-413 (420)
163 3ecd_A Serine hydroxymethyltra 99.9 3.4E-21 1.2E-25 174.4 21.4 219 2-247 105-342 (425)
164 3n0l_A Serine hydroxymethyltra 99.9 4.6E-21 1.6E-25 173.2 22.1 194 2-202 98-306 (417)
165 3hbx_A GAD 1, glutamate decarb 99.9 1.5E-21 5.2E-26 180.3 18.9 265 3-318 129-446 (502)
166 3mc6_A Sphingosine-1-phosphate 99.9 1.2E-21 4.1E-26 181.2 18.3 260 2-319 137-440 (497)
167 2oat_A Ornithine aminotransfer 99.9 1.7E-21 5.9E-26 177.3 18.8 257 2-316 144-435 (439)
168 1z7d_A Ornithine aminotransfer 99.9 1.6E-21 5.4E-26 177.2 18.4 258 2-316 133-425 (433)
169 3nx3_A Acoat, acetylornithine 99.9 1.5E-21 5.1E-26 175.3 18.0 255 2-316 104-391 (395)
170 3gbx_A Serine hydroxymethyltra 99.9 1.3E-21 4.4E-26 176.9 17.5 218 2-247 103-341 (420)
171 2fnu_A Aminotransferase; prote 99.9 4.7E-21 1.6E-25 170.6 20.6 276 2-318 58-370 (375)
172 1rv3_A Serine hydroxymethyltra 99.9 1.4E-21 4.6E-26 179.9 17.1 194 3-204 122-351 (483)
173 3a9z_A Selenocysteine lyase; P 99.9 3.5E-21 1.2E-25 174.9 19.5 282 2-316 89-424 (432)
174 1w23_A Phosphoserine aminotran 99.9 3.2E-22 1.1E-26 177.3 12.1 252 2-317 78-357 (360)
175 1sff_A 4-aminobutyrate aminotr 99.9 4.4E-21 1.5E-25 173.9 18.7 258 2-316 113-420 (426)
176 2po3_A 4-dehydrase; external a 99.9 1.7E-20 5.7E-25 170.1 22.4 185 2-197 78-280 (424)
177 1o69_A Aminotransferase; struc 99.9 3.7E-20 1.3E-24 166.2 23.8 282 2-320 58-387 (394)
178 3ke3_A Putative serine-pyruvat 99.9 1.3E-20 4.4E-25 168.3 20.1 197 2-204 62-301 (379)
179 2vi8_A Serine hydroxymethyltra 99.9 8.6E-21 3E-25 170.7 18.6 267 2-316 96-383 (405)
180 2dgk_A GAD-beta, GADB, glutama 99.9 1E-20 3.5E-25 172.9 19.0 265 3-316 115-430 (452)
181 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.9E-20 6.6E-25 171.2 20.6 191 2-205 101-340 (456)
182 1s0a_A Adenosylmethionine-8-am 99.9 8.3E-21 2.8E-25 172.3 16.3 262 2-317 114-421 (429)
183 2x3l_A ORN/Lys/Arg decarboxyla 99.9 3E-21 1E-25 175.9 13.3 131 2-144 83-230 (446)
184 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.9E-20 6.7E-25 171.1 17.5 247 14-316 175-454 (456)
185 2eo5_A 419AA long hypothetical 99.8 1.9E-20 6.3E-25 169.5 17.1 251 2-316 115-414 (419)
186 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 3.5E-19 1.2E-23 162.0 25.3 286 2-317 88-433 (437)
187 3dxv_A Alpha-amino-epsilon-cap 99.8 1E-20 3.6E-25 172.2 14.9 219 2-248 115-383 (439)
188 1zod_A DGD, 2,2-dialkylglycine 99.8 1.3E-20 4.5E-25 171.2 15.0 263 2-316 113-428 (433)
189 2fyf_A PSAT, phosphoserine ami 99.8 3.5E-20 1.2E-24 166.6 17.2 262 2-317 108-395 (398)
190 3i4j_A Aminotransferase, class 99.8 6.3E-20 2.2E-24 166.6 18.1 144 2-149 100-286 (430)
191 3vp6_A Glutamate decarboxylase 99.8 9.1E-20 3.1E-24 168.8 18.8 254 14-318 191-503 (511)
192 3h7f_A Serine hydroxymethyltra 99.8 5.8E-20 2E-24 167.6 16.1 191 2-202 118-331 (447)
193 2a7v_A Serine hydroxymethyltra 99.8 3.1E-19 1.1E-23 163.1 19.7 220 2-247 131-387 (490)
194 3b8x_A WBDK, pyridoxamine 5-ph 99.8 2.2E-18 7.5E-23 154.4 24.9 273 2-313 60-389 (390)
195 3a8u_X Omega-amino acid--pyruv 99.8 5.3E-19 1.8E-23 161.4 21.2 261 2-316 121-443 (449)
196 1ax4_A Tryptophanase; tryptoph 99.8 5.9E-19 2E-23 161.8 20.1 270 2-316 102-437 (467)
197 1wyu_A Glycine dehydrogenase ( 99.8 7E-19 2.4E-23 160.1 19.7 246 12-316 147-436 (438)
198 1js3_A DDC;, DOPA decarboxylas 99.8 3.3E-19 1.1E-23 164.3 17.7 204 18-248 185-429 (486)
199 3tfu_A Adenosylmethionine-8-am 99.8 1.9E-19 6.4E-24 164.5 15.7 263 2-316 146-449 (457)
200 3l44_A Glutamate-1-semialdehyd 99.8 1.2E-19 4.1E-24 164.9 14.2 191 2-197 122-343 (434)
201 3n5m_A Adenosylmethionine-8-am 99.8 4.8E-19 1.6E-23 161.8 18.2 264 2-316 118-448 (452)
202 3gju_A Putative aminotransfera 99.8 9.8E-19 3.4E-23 160.1 20.3 144 2-148 123-314 (460)
203 2okj_A Glutamate decarboxylase 99.8 5.9E-19 2E-23 163.4 18.9 183 16-203 189-412 (504)
204 4a6r_A Omega transaminase; tra 99.8 8.4E-19 2.9E-23 160.5 18.9 143 2-147 122-311 (459)
205 1c4k_A Protein (ornithine deca 99.8 2.4E-18 8.3E-23 164.0 22.6 191 2-204 200-447 (730)
206 4e1o_A HDC, histidine decarbox 99.8 1E-18 3.4E-23 160.8 19.1 251 14-317 187-475 (481)
207 2jis_A Cysteine sulfinic acid 99.8 1.8E-18 6.2E-23 160.4 20.6 180 17-203 205-427 (515)
208 2cy8_A D-phgat, D-phenylglycin 99.8 2.5E-19 8.7E-24 163.7 14.5 191 2-197 124-344 (453)
209 3dod_A Adenosylmethionine-8-am 99.8 7.6E-19 2.6E-23 160.3 16.5 143 2-148 115-304 (448)
210 4ffc_A 4-aminobutyrate aminotr 99.8 1.3E-18 4.4E-23 158.9 17.8 222 2-248 136-407 (453)
211 3oks_A 4-aminobutyrate transam 99.8 1.9E-18 6.3E-23 157.8 17.8 260 2-316 133-447 (451)
212 2epj_A Glutamate-1-semialdehyd 99.8 1.3E-19 4.6E-24 164.6 10.1 223 2-248 123-393 (434)
213 2qma_A Diaminobutyrate-pyruvat 99.8 1.6E-18 5.4E-23 160.2 17.1 250 15-317 201-493 (497)
214 3hmu_A Aminotransferase, class 99.8 2.2E-18 7.4E-23 158.0 17.5 191 2-197 127-366 (472)
215 3k28_A Glutamate-1-semialdehyd 99.8 6.1E-19 2.1E-23 160.0 13.3 190 2-197 120-340 (429)
216 3k40_A Aromatic-L-amino-acid d 99.8 3E-18 1E-22 157.2 17.9 251 14-317 181-468 (475)
217 2vyc_A Biodegradative arginine 99.8 1.8E-17 6.1E-22 159.3 23.2 184 2-197 232-464 (755)
218 2cjg_A L-lysine-epsilon aminot 99.8 1.8E-19 6.1E-24 164.5 8.3 246 15-316 157-444 (449)
219 2e7u_A Glutamate-1-semialdehyd 99.8 1.9E-18 6.6E-23 156.5 14.6 221 2-248 119-389 (424)
220 3e77_A Phosphoserine aminotran 99.8 2.3E-18 7.8E-23 152.3 14.2 259 2-319 88-374 (377)
221 3i5t_A Aminotransferase; pyrid 99.8 3.3E-18 1.1E-22 157.1 15.4 193 2-198 125-370 (476)
222 3qm2_A Phosphoserine aminotran 99.8 9.4E-18 3.2E-22 149.1 15.1 257 2-319 102-384 (386)
223 3fq8_A Glutamate-1-semialdehyd 99.8 2.2E-18 7.6E-23 156.2 11.3 191 2-197 119-340 (427)
224 4e77_A Glutamate-1-semialdehyd 99.8 1.2E-17 4.3E-22 151.4 15.0 143 2-148 120-291 (429)
225 2oqx_A Tryptophanase; lyase, p 99.7 5.2E-17 1.8E-21 148.9 17.4 195 2-205 100-351 (467)
226 2yky_A Beta-transaminase; tran 99.6 2.6E-19 8.9E-24 162.7 0.0 214 2-235 167-398 (465)
227 1ohv_A 4-aminobutyrate aminotr 99.7 5.3E-17 1.8E-21 148.9 10.7 206 51-317 241-468 (472)
228 3m5u_A Phosphoserine aminotran 99.7 1.9E-15 6.4E-20 133.1 16.8 253 2-319 80-359 (361)
229 3n75_A LDC, lysine decarboxyla 99.6 1.6E-15 5.5E-20 143.6 15.0 184 2-198 222-443 (715)
230 3ou5_A Serine hydroxymethyltra 99.6 1.1E-14 3.7E-19 128.4 17.3 222 2-248 131-391 (490)
231 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 1.1E-14 3.6E-19 129.1 11.6 183 4-197 147-355 (501)
232 3bc8_A O-phosphoseryl-tRNA(SEC 99.6 1.7E-13 5.9E-18 122.6 18.3 173 15-198 144-338 (450)
233 4ao9_A Beta-phenylalanine amin 99.5 1.3E-13 4.5E-18 124.5 11.2 199 15-234 169-383 (454)
234 4atq_A 4-aminobutyrate transam 99.4 8E-13 2.7E-17 119.8 13.2 166 62-248 225-413 (456)
235 4e3q_A Pyruvate transaminase; 99.3 3E-11 1E-15 109.9 15.3 161 53-234 223-404 (473)
236 4a0g_A Adenosylmethionine-8-am 99.2 7.6E-11 2.6E-15 114.3 11.0 92 53-148 577-688 (831)
237 1tks_A 3,4-dihydroxy-2-butanon 73.8 5.2 0.00018 31.3 5.0 38 61-98 157-194 (204)
238 4h1h_A LMO1638 protein; MCCF-l 68.6 15 0.00051 31.2 7.3 69 11-80 8-95 (327)
239 1pq4_A Periplasmic binding pro 66.0 30 0.001 28.7 8.6 70 14-98 189-265 (291)
240 2yxb_A Coenzyme B12-dependent 65.7 20 0.0007 26.7 6.8 75 16-93 19-97 (161)
241 3tla_A MCCF; serine protease, 65.6 19 0.00064 31.2 7.4 68 12-80 40-126 (371)
242 3gi1_A LBP, laminin-binding pr 65.2 28 0.00095 28.8 8.2 70 14-98 178-256 (286)
243 3sr3_A Microcin immunity prote 62.2 23 0.00077 30.2 7.2 69 11-80 9-96 (336)
244 1iv0_A Hypothetical protein; r 61.3 18 0.00062 24.5 5.2 52 51-102 39-95 (98)
245 3ic5_A Putative saccharopine d 60.3 36 0.0012 23.0 8.2 76 8-97 21-97 (118)
246 4e5s_A MCCFLIKE protein (BA_56 59.6 20 0.0007 30.4 6.4 69 11-80 8-95 (331)
247 1y80_A Predicted cobalamin bin 58.2 41 0.0014 26.2 7.7 83 16-101 89-179 (210)
248 3mwd_B ATP-citrate synthase; A 57.7 24 0.00083 30.0 6.5 76 22-102 64-140 (334)
249 3mio_A DHBP synthase, 3,4-dihy 57.5 20 0.00068 28.0 5.4 37 62-98 157-194 (206)
250 3io5_A Recombination and repai 55.9 83 0.0028 26.7 9.3 61 14-76 57-124 (333)
251 1vhx_A Putative holliday junct 55.6 26 0.00089 25.8 5.7 54 51-104 43-102 (150)
252 4gqr_A Pancreatic alpha-amylas 55.4 5.9 0.0002 35.5 2.5 86 13-102 7-99 (496)
253 2o1e_A YCDH; alpha-beta protei 55.1 40 0.0014 28.3 7.5 69 14-97 189-266 (312)
254 1g57_A DHBP synthase, 3,4-dihy 53.8 25 0.00087 27.7 5.5 36 62-98 166-201 (217)
255 1snn_A DHBP synthase, 3,4-dihy 51.6 22 0.00074 28.3 4.8 37 61-98 176-212 (227)
256 1xvl_A Mn transporter, MNTC pr 51.3 55 0.0019 27.5 7.8 68 15-97 204-280 (321)
257 3cx3_A Lipoprotein; zinc-bindi 49.5 32 0.0011 28.4 5.9 69 14-97 176-253 (284)
258 2xw6_A MGS, methylglyoxal synt 49.3 37 0.0013 24.5 5.4 60 40-99 48-111 (134)
259 1zl0_A Hypothetical protein PA 48.1 38 0.0013 28.4 6.2 69 11-80 13-97 (311)
260 3dmy_A Protein FDRA; predicted 47.6 16 0.00054 32.9 3.9 128 1-147 1-129 (480)
261 1ry2_A Acetyl-coenzyme A synth 46.6 79 0.0027 29.5 8.8 75 12-88 136-211 (663)
262 3v7e_A Ribosome-associated pro 46.3 35 0.0012 22.1 4.6 47 51-101 15-61 (82)
263 1g94_A Alpha-amylase; beta-alp 45.5 9.3 0.00032 34.0 2.1 30 73-102 58-87 (448)
264 2prs_A High-affinity zinc upta 44.9 32 0.0011 28.4 5.2 70 14-98 173-251 (284)
265 3hh8_A Metal ABC transporter s 43.7 42 0.0014 27.8 5.8 67 16-97 184-259 (294)
266 3qtp_A Enolase 1; glycolysis, 43.4 61 0.0021 28.7 6.9 86 11-99 291-379 (441)
267 3sho_A Transcriptional regulat 42.8 54 0.0018 24.6 6.0 101 6-119 31-137 (187)
268 3ezx_A MMCP 1, monomethylamine 42.1 74 0.0025 24.9 6.7 82 16-100 93-184 (215)
269 1qyd_A Pinoresinol-lariciresin 42.0 1.4E+02 0.0048 24.3 9.5 88 7-98 20-113 (313)
270 2ya0_A Putative alkaline amylo 41.4 12 0.00042 35.6 2.3 26 79-104 254-279 (714)
271 1xrs_B D-lysine 5,6-aminomutas 41.4 1.4E+02 0.0049 24.2 9.3 84 36-122 152-243 (262)
272 3o63_A Probable thiamine-phosp 41.1 34 0.0012 27.5 4.7 49 52-101 46-104 (243)
273 3bzy_B ESCU; auto cleavage pro 41.1 17 0.00058 23.8 2.3 20 82-101 29-48 (83)
274 2e8y_A AMYX protein, pullulana 40.9 9.7 0.00033 36.3 1.6 27 78-104 314-340 (718)
275 3bh4_A Alpha-amylase; calcium, 40.8 15 0.00052 32.9 2.8 28 75-102 74-101 (483)
276 1vmd_A MGS, methylglyoxal synt 40.2 63 0.0022 24.6 5.6 60 40-99 72-135 (178)
277 1toa_A Tromp-1, protein (perip 39.9 1.1E+02 0.0037 25.6 7.8 70 15-96 197-277 (313)
278 1ud2_A Amylase, alpha-amylase; 39.7 16 0.00055 32.7 2.8 28 75-102 76-103 (480)
279 1wpc_A Glucan 1,4-alpha-maltoh 39.6 16 0.00056 32.8 2.8 28 75-102 78-105 (485)
280 1mxg_A Alpha amylase; hyperthe 39.5 17 0.00057 32.2 2.8 29 75-103 82-110 (435)
281 1hvx_A Alpha-amylase; hydrolas 39.3 16 0.00056 33.1 2.8 28 75-102 77-104 (515)
282 3ghf_A Septum site-determining 39.2 45 0.0015 23.5 4.5 54 40-97 15-78 (120)
283 1gcy_A Glucan 1,4-alpha-maltot 38.8 17 0.00058 33.1 2.8 30 74-103 87-116 (527)
284 3dm5_A SRP54, signal recogniti 38.5 78 0.0027 28.1 6.9 92 10-102 123-224 (443)
285 2al1_A Enolase 1, 2-phospho-D- 38.2 58 0.002 28.8 6.1 86 11-99 285-372 (436)
286 1wza_A Alpha-amylase A; hydrol 38.1 17 0.00058 32.7 2.7 27 76-102 78-104 (488)
287 4aie_A Glucan 1,6-alpha-glucos 37.9 14 0.00049 33.6 2.2 26 77-102 77-102 (549)
288 1b93_A Protein (methylglyoxal 37.6 54 0.0018 24.2 4.8 60 40-99 56-119 (152)
289 1ccw_A Protein (glutamate muta 37.4 52 0.0018 23.6 4.8 67 30-99 21-91 (137)
290 3kts_A Glycerol uptake operon 37.2 53 0.0018 25.4 4.9 82 50-149 17-100 (192)
291 1lwj_A 4-alpha-glucanotransfer 37.0 16 0.00054 32.4 2.3 27 76-102 66-92 (441)
292 3mfq_A TROA, high-affinity zin 36.9 43 0.0015 27.6 4.8 71 16-98 164-243 (282)
293 2dh2_A 4F2 cell-surface antige 36.9 19 0.00064 31.8 2.7 29 76-104 78-106 (424)
294 1ht6_A AMY1, alpha-amylase iso 36.8 16 0.00053 32.0 2.2 29 76-104 65-93 (405)
295 1jae_A Alpha-amylase; glycosid 36.8 15 0.00051 32.9 2.1 31 72-102 67-97 (471)
296 3ujp_A Mn transporter subunit; 36.4 79 0.0027 26.4 6.4 67 15-96 190-265 (307)
297 3nl6_A Thiamine biosynthetic b 36.3 36 0.0012 31.1 4.5 49 52-101 28-77 (540)
298 3i6i_A Putative leucoanthocyan 36.2 1.8E+02 0.006 24.2 8.8 60 40-102 60-120 (346)
299 3gv0_A Transcriptional regulat 35.8 98 0.0034 24.9 6.9 68 23-98 23-94 (288)
300 1k4i_A 3,4-dihydroxy-2-butanon 35.6 53 0.0018 26.2 4.7 37 61-98 165-212 (233)
301 1sjd_A N-acylamino acid racema 35.5 1E+02 0.0035 26.2 7.2 48 51-100 244-291 (368)
302 2vt1_B Surface presentation of 35.0 24 0.00082 23.7 2.3 20 82-101 29-48 (93)
303 2guy_A Alpha-amylase A; (beta- 34.6 18 0.00062 32.4 2.3 28 76-103 94-121 (478)
304 3dhu_A Alpha-amylase; structur 34.2 20 0.00067 31.8 2.4 23 80-102 84-106 (449)
305 2z1k_A (NEO)pullulanase; hydro 34.1 18 0.00061 32.3 2.2 27 77-103 94-120 (475)
306 2zcu_A Uncharacterized oxidore 33.8 1.2E+02 0.004 24.3 7.1 52 41-94 45-96 (286)
307 2wc7_A Alpha amylase, catalyti 33.6 17 0.00059 32.6 2.0 27 77-103 100-126 (488)
308 2ptz_A Enolase; lyase, glycoly 33.5 66 0.0023 28.4 5.7 85 12-99 285-373 (432)
309 2ioj_A Hypothetical protein AF 33.4 1.3E+02 0.0044 21.4 8.6 49 44-99 55-104 (139)
310 1nu0_A Hypothetical protein YQ 33.4 34 0.0011 24.9 3.1 53 51-103 41-99 (138)
311 2ya1_A Putative alkaline amylo 33.1 21 0.00071 35.6 2.5 27 79-105 561-587 (1014)
312 3t7y_A YOP proteins translocat 32.9 24 0.00081 23.9 2.1 20 82-101 44-63 (97)
313 1ea9_C Cyclomaltodextrinase; h 32.8 28 0.00095 32.2 3.2 55 51-105 170-244 (583)
314 1ua7_A Alpha-amylase; beta-alp 32.6 18 0.00063 31.8 1.9 30 76-105 71-100 (422)
315 4a18_G RPL30; ribosome, eukary 32.4 67 0.0023 21.8 4.4 44 51-98 26-69 (104)
316 3faw_A Reticulocyte binding pr 32.3 21 0.00071 34.9 2.3 25 79-103 369-393 (877)
317 2aaa_A Alpha-amylase; glycosid 32.2 20 0.00068 32.2 2.1 26 77-102 95-120 (484)
318 3m9w_A D-xylose-binding peripl 32.0 1.2E+02 0.004 24.8 6.9 72 22-100 14-91 (313)
319 2fym_A Enolase; RNA degradosom 31.8 1.1E+02 0.0036 27.0 6.8 83 15-100 283-369 (431)
320 3igs_A N-acetylmannosamine-6-p 31.7 50 0.0017 26.3 4.2 63 51-118 90-154 (232)
321 3c01_E Surface presentation of 31.5 26 0.00088 23.8 2.1 20 82-101 29-48 (98)
322 2akz_A Gamma enolase, neural; 31.3 71 0.0024 28.3 5.5 85 12-99 283-369 (439)
323 3otr_A Enolase; structural gen 31.2 69 0.0024 28.4 5.3 85 12-99 294-382 (452)
324 2i2x_B MTAC, methyltransferase 30.5 1.1E+02 0.0037 24.7 6.1 83 15-100 123-211 (258)
325 3tqp_A Enolase; energy metabol 30.3 64 0.0022 28.5 5.0 86 12-100 276-365 (428)
326 1vp5_A 2,5-diketo-D-gluconic a 30.3 2E+02 0.0067 23.7 7.8 15 83-97 184-198 (298)
327 1m53_A Isomaltulose synthase; 30.3 23 0.00077 32.7 2.2 24 80-103 93-116 (570)
328 3o83_A Peptide arylation enzym 30.2 1.4E+02 0.0047 26.9 7.5 58 12-71 77-135 (544)
329 3tha_A Tryptophan synthase alp 30.1 99 0.0034 25.0 5.7 20 54-73 132-151 (252)
330 1j0h_A Neopullulanase; beta-al 30.0 26 0.0009 32.4 2.6 27 79-105 222-248 (588)
331 2oz8_A MLL7089 protein; struct 30.0 90 0.0031 26.9 5.9 43 51-99 254-296 (389)
332 2xhz_A KDSD, YRBH, arabinose 5 30.0 1.4E+02 0.0048 22.1 6.5 90 5-101 39-133 (183)
333 2yvq_A Carbamoyl-phosphate syn 29.9 95 0.0033 22.4 5.2 45 54-99 87-131 (143)
334 1wzl_A Alpha-amylase II; pullu 29.8 25 0.00087 32.4 2.4 28 78-105 218-245 (585)
335 3vnd_A TSA, tryptophan synthas 29.7 1.4E+02 0.0048 24.3 6.6 41 51-97 136-177 (267)
336 3q58_A N-acetylmannosamine-6-p 29.6 56 0.0019 26.0 4.1 63 51-118 90-154 (229)
337 1uok_A Oligo-1,6-glucosidase; 29.4 24 0.00081 32.4 2.2 26 77-102 76-101 (558)
338 2r6j_A Eugenol synthase 1; phe 29.4 1.5E+02 0.0052 24.2 7.2 54 40-98 58-112 (318)
339 1zja_A Trehalulose synthase; s 29.3 25 0.00084 32.3 2.3 28 77-104 77-104 (557)
340 2jl1_A Triphenylmethane reduct 29.3 2.2E+02 0.0074 22.7 8.0 52 41-94 46-99 (287)
341 3on1_A BH2414 protein; structu 29.2 87 0.003 21.0 4.6 44 51-98 22-65 (101)
342 3bc9_A AMYB, alpha amylase, ca 28.9 28 0.00097 32.3 2.6 26 77-102 206-231 (599)
343 3uj2_A Enolase 1; enzyme funct 28.1 74 0.0025 28.3 5.0 85 12-99 302-390 (449)
344 1d3c_A Cyclodextrin glycosyltr 28.0 26 0.00091 33.1 2.3 26 77-102 113-138 (686)
345 4aef_A Neopullulanase (alpha-a 27.8 26 0.00089 32.8 2.2 52 51-102 237-308 (645)
346 3pff_A ATP-citrate synthase; p 27.7 83 0.0028 30.4 5.5 75 22-102 550-626 (829)
347 1gjw_A Maltodextrin glycosyltr 27.6 24 0.00083 33.0 1.9 26 79-104 181-206 (637)
348 8abp_A L-arabinose-binding pro 27.6 1.2E+02 0.004 24.6 6.0 68 25-99 17-89 (306)
349 2zic_A Dextran glucosidase; TI 27.5 25 0.00087 32.1 2.0 26 77-102 76-101 (543)
350 3u5e_c L32, RP73, YL38, 60S ri 27.2 88 0.003 21.2 4.3 44 51-98 26-69 (105)
351 2wan_A Pullulanase; hydrolase, 27.1 33 0.0011 33.7 2.8 27 79-105 531-557 (921)
352 3kjx_A Transcriptional regulat 26.9 2.2E+02 0.0076 23.5 7.8 66 23-97 81-151 (344)
353 1qho_A Alpha-amylase; glycosid 26.9 29 0.00098 32.8 2.3 26 77-102 105-130 (686)
354 3aie_A Glucosyltransferase-SI; 26.8 33 0.0011 33.3 2.7 32 74-105 687-718 (844)
355 1cyg_A Cyclodextrin glucanotra 26.8 29 0.00098 32.8 2.3 26 77-102 109-134 (680)
356 3vgf_A Malto-oligosyltrehalose 26.6 26 0.0009 32.1 1.9 26 80-105 168-193 (558)
357 3bmv_A Cyclomaltodextrin gluca 26.6 29 0.001 32.7 2.3 26 77-102 114-139 (683)
358 3ff4_A Uncharacterized protein 26.5 52 0.0018 23.2 3.1 39 54-101 74-112 (122)
359 3edf_A FSPCMD, cyclomaltodextr 26.4 30 0.001 32.1 2.3 52 51-102 146-221 (601)
360 1rlg_A 50S ribosomal protein L 26.3 1.3E+02 0.0045 20.8 5.2 45 51-98 31-75 (119)
361 2aif_A Ribosomal protein L7A; 26.3 1.3E+02 0.0044 21.5 5.2 45 51-98 45-89 (135)
362 2rdx_A Mandelate racemase/muco 26.1 2.6E+02 0.0088 23.8 8.1 49 51-101 248-296 (379)
363 1xx6_A Thymidine kinase; NESG, 26.1 72 0.0025 24.4 4.1 82 11-98 32-113 (191)
364 3c1o_A Eugenol synthase; pheny 25.9 2.7E+02 0.0091 22.6 8.2 54 40-98 56-110 (321)
365 4aee_A Alpha amylase, catalyti 25.8 30 0.001 32.8 2.2 52 51-102 263-334 (696)
366 3ttq_A Dextransucrase; (beta/a 25.6 37 0.0013 33.7 2.8 30 73-102 906-935 (1108)
367 3aj7_A Oligo-1,6-glucosidase; 25.5 32 0.0011 31.8 2.3 24 80-103 88-111 (589)
368 2xij_A Methylmalonyl-COA mutas 25.4 2.4E+02 0.0083 26.9 8.1 76 16-94 605-684 (762)
369 2bhu_A Maltooligosyltrehalose 25.4 31 0.001 32.1 2.1 26 80-105 193-218 (602)
370 3jy6_A Transcriptional regulat 25.1 1.2E+02 0.0042 24.0 5.7 65 27-101 24-94 (276)
371 2ze0_A Alpha-glucosidase; TIM 25.0 27 0.00091 32.0 1.6 26 77-102 76-101 (555)
372 1w6t_A Enolase; bacterial infe 25.0 82 0.0028 27.9 4.8 82 15-99 295-380 (444)
373 2fc3_A 50S ribosomal protein L 25.0 1.4E+02 0.0049 20.8 5.2 45 51-98 32-76 (124)
374 3ffs_A Inosine-5-monophosphate 25.0 3.1E+02 0.011 23.8 8.3 108 9-118 150-273 (400)
375 3uug_A Multiple sugar-binding 24.9 1.2E+02 0.0039 25.0 5.6 71 23-100 16-92 (330)
376 1g5a_A Amylosucrase; glycosylt 24.8 37 0.0013 31.7 2.6 22 81-102 164-185 (628)
377 1chr_A Chloromuconate cycloiso 24.8 1.8E+02 0.0063 24.7 6.9 49 51-101 250-298 (370)
378 3klk_A Glucansucrase; native f 24.7 38 0.0013 33.6 2.7 29 74-102 740-768 (1039)
379 3gt7_A Sensor protein; structu 24.7 1.8E+02 0.0063 20.4 6.9 54 14-71 6-59 (154)
380 3zq4_A Ribonuclease J 1, RNAse 24.6 1.6E+02 0.0056 26.8 6.8 77 12-94 321-408 (555)
381 2lbw_A H/ACA ribonucleoprotein 24.6 1.7E+02 0.0058 20.4 5.5 47 51-100 24-70 (121)
382 1pg4_A Acetyl-COA synthetase; 24.6 1.3E+02 0.0046 27.9 6.4 73 12-86 129-202 (652)
383 2qlc_A DNA repair protein RADC 24.5 1.1E+02 0.0039 21.6 4.6 41 53-95 58-105 (126)
384 3qn3_A Enolase; structural gen 24.4 87 0.003 27.5 4.7 87 11-100 273-363 (417)
385 3m07_A Putative alpha amylase; 24.4 39 0.0013 31.5 2.6 26 80-105 203-228 (618)
386 1zgd_A Chalcone reductase; pol 24.4 3E+02 0.01 22.7 8.0 50 47-99 165-214 (312)
387 3zss_A Putative glucanohydrola 24.2 43 0.0015 31.7 2.9 23 80-102 321-343 (695)
388 1vbj_A Prostaglandin F synthas 24.0 2.9E+02 0.0099 22.4 8.0 16 83-98 176-191 (281)
389 3etc_A AMP-binding protein; ad 24.0 1.8E+02 0.006 26.6 7.0 58 12-71 108-166 (580)
390 3f7j_A YVGN protein; aldo-keto 23.7 2.8E+02 0.0097 22.4 7.6 18 54-71 125-142 (276)
391 3v7q_A Probable ribosomal prot 23.5 1.3E+02 0.0045 20.1 4.6 44 51-98 23-66 (101)
392 1m7x_A 1,4-alpha-glucan branch 23.4 35 0.0012 31.8 2.1 26 80-105 205-230 (617)
393 3ni2_A 4-coumarate:COA ligase; 23.4 3.8E+02 0.013 23.8 9.2 57 12-70 71-128 (536)
394 2ps2_A Putative mandelate race 23.2 1.8E+02 0.0061 24.8 6.5 49 51-101 250-298 (371)
395 3g7s_A Long-chain-fatty-acid-- 23.1 2.5E+02 0.0087 25.1 7.9 58 12-71 74-132 (549)
396 3i4k_A Muconate lactonizing en 23.0 1.8E+02 0.0061 25.0 6.5 48 51-100 256-303 (383)
397 2kg4_A Growth arrest and DNA-d 23.0 2.2E+02 0.0075 21.3 6.0 58 32-92 78-150 (165)
398 1wuf_A Hypothetical protein LI 23.0 1.7E+02 0.0058 25.2 6.4 48 51-100 263-310 (393)
399 3gd6_A Muconate cycloisomerase 22.9 88 0.003 27.1 4.5 80 18-101 218-297 (391)
400 3czg_A Sucrose hydrolase; (alp 22.9 35 0.0012 32.0 2.0 52 51-102 104-178 (644)
401 1qwk_A Aldose reductase, aldo- 22.9 3.2E+02 0.011 22.5 8.3 50 49-101 154-203 (317)
402 3h7u_A Aldo-keto reductase; st 22.7 2.6E+02 0.0089 23.4 7.3 50 49-101 179-228 (335)
403 2b8t_A Thymidine kinase; deoxy 22.7 58 0.002 25.8 3.0 85 11-101 36-124 (223)
404 1req_A Methylmalonyl-COA mutas 22.6 2.7E+02 0.0093 26.4 7.9 82 16-100 597-685 (727)
405 3cg4_A Response regulator rece 22.6 1.9E+02 0.0065 19.7 7.4 54 14-71 6-59 (142)
406 1s1p_A Aldo-keto reductase fam 22.6 3.4E+02 0.011 22.6 8.1 55 43-100 161-217 (331)
407 1oi7_A Succinyl-COA synthetase 22.5 78 0.0027 26.1 3.9 110 22-147 50-161 (288)
408 3jva_A Dipeptide epimerase; en 22.5 1.5E+02 0.0051 25.1 5.8 49 51-101 245-293 (354)
409 1hw6_A 2,5-diketo-D-gluconic a 22.5 2.9E+02 0.0098 22.4 7.4 14 84-97 172-185 (278)
410 3buv_A 3-OXO-5-beta-steroid 4- 22.4 3.4E+02 0.011 22.5 8.3 54 43-99 164-219 (326)
411 3i42_A Response regulator rece 22.4 1.8E+02 0.0061 19.4 5.8 51 17-71 5-55 (127)
412 4f40_A Prostaglandin F2-alpha 22.2 3.2E+02 0.011 22.2 8.3 45 51-98 156-200 (288)
413 3b1s_B Flagellar biosynthetic 27.8 19 0.00064 23.9 0.0 21 82-102 29-49 (87)
414 3llv_A Exopolyphosphatase-rela 22.1 2E+02 0.0068 20.0 5.8 56 10-72 24-79 (141)
415 1afs_A 3-alpha-HSD, 3-alpha-hy 22.0 3.2E+02 0.011 22.7 7.7 55 43-100 161-217 (323)
416 1mdb_A 2,3-dihydroxybenzoate-A 22.0 3.2E+02 0.011 24.4 8.3 58 12-71 72-130 (539)
417 3j21_Z 50S ribosomal protein L 22.0 1.6E+02 0.0053 19.6 4.7 44 51-98 19-62 (99)
418 1vq8_F 50S ribosomal protein L 22.0 1.6E+02 0.0054 20.5 4.9 45 51-98 33-77 (120)
419 2xzm_U Ribosomal protein L7AE 21.9 1.9E+02 0.0065 20.4 5.3 45 51-98 28-72 (126)
420 4ina_A Saccharopine dehydrogen 21.9 2.5E+02 0.0086 24.2 7.3 85 7-97 16-104 (405)
421 3nav_A Tryptophan synthase alp 21.9 2.1E+02 0.0073 23.3 6.3 23 52-74 139-161 (271)
422 2yv1_A Succinyl-COA ligase [AD 21.8 67 0.0023 26.6 3.4 109 23-147 57-167 (294)
423 3g1w_A Sugar ABC transporter; 21.5 1.6E+02 0.0056 23.6 5.8 69 25-100 19-94 (305)
424 3b3e_A YVGN protein; aldo-keto 21.5 3.2E+02 0.011 22.6 7.6 19 53-71 158-176 (310)
425 1v25_A Long-chain-fatty-acid-C 21.3 2.1E+02 0.0073 25.6 7.0 57 12-70 69-126 (541)
426 2wsk_A Glycogen debranching en 21.2 43 0.0015 31.5 2.2 27 79-105 241-267 (657)
427 3h75_A Periplasmic sugar-bindi 21.0 1E+02 0.0035 25.7 4.5 66 28-100 22-94 (350)
428 2d59_A Hypothetical protein PH 21.0 1.6E+02 0.0053 21.2 4.9 40 55-102 94-133 (144)
429 3e2i_A Thymidine kinase; Zn-bi 20.9 76 0.0026 25.1 3.3 82 12-99 53-134 (219)
430 3o9z_A Lipopolysaccaride biosy 20.7 1.4E+02 0.0046 24.8 5.1 25 51-75 55-84 (312)
431 2ale_A SNU13, NHP2/L7AE family 20.5 2.1E+02 0.007 20.5 5.3 45 51-98 36-80 (134)
432 2jli_A YSCU, YOP proteins tran 20.5 53 0.0018 23.3 2.1 20 82-101 73-92 (123)
433 4ggi_A UDP-2,3-diacylglucosami 20.5 1.6E+02 0.0054 24.2 5.3 41 52-97 234-275 (283)
434 3l0g_A Nicotinate-nucleotide p 20.5 57 0.002 27.1 2.6 71 45-125 210-285 (300)
435 3aml_A OS06G0726400 protein; s 20.4 43 0.0015 32.1 2.1 26 80-105 251-276 (755)
436 2gdq_A YITF; mandelate racemas 20.3 1.5E+02 0.0053 25.4 5.5 47 51-99 247-293 (382)
437 1ji1_A Alpha-amylase I; beta/a 20.3 45 0.0015 31.1 2.2 54 51-104 189-267 (637)
438 1qyc_A Phenylcoumaran benzylic 20.2 3.4E+02 0.012 21.8 7.8 54 40-98 56-110 (308)
439 3k1d_A 1,4-alpha-glucan-branch 20.2 44 0.0015 31.8 2.1 26 80-105 313-338 (722)
440 3k8k_A Alpha-amylase, SUSG; al 20.2 58 0.002 30.7 2.9 52 51-102 58-129 (669)
441 3l6u_A ABC-type sugar transpor 20.2 1.5E+02 0.0051 23.7 5.2 65 29-100 27-97 (293)
442 3hcw_A Maltose operon transcri 20.1 1.7E+02 0.0057 23.6 5.6 70 23-100 25-99 (295)
443 4had_A Probable oxidoreductase 20.1 86 0.0029 26.4 3.8 41 61-101 84-145 (350)
444 1xbi_A 50S ribosomal protein L 20.0 2.1E+02 0.0073 19.8 5.2 45 51-98 33-77 (120)
No 1
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-43 Score=320.59 Aligned_cols=298 Identities=30% Similarity=0.481 Sum_probs=263.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++++++++||+|++++|+|+++...+.....+ .|.++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 106 ~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~ai-~~~t~~v~le~p~NptG~~~ 183 (414)
T 3ndn_A 106 MAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFETPSNPMQSLV 183 (414)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHT-SSCCSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCccc
Confidence 36788889999999999999999999998887654444 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCC-CeeEEEEEcChhHHH-HHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVN-SMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~-~l~~~~~~~~~~~ 157 (324)
|+++|+++|+++|+++|+|++|+ +....+...++|+++.|+||+++++| .+ +|+++++++.+. .+..... ..
T Consensus 184 ~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~-~G~vv~~~~~~~~~l~~~~~----~~ 258 (414)
T 3ndn_A 184 DIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVL-GGAILGDREYIDGPVQKLMR----HT 258 (414)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCC-CEEEEECHHHHTTHHHHHHH----HH
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCce-EEEEEECHHHHHHHHHHHHH----Hc
Confidence 99999999999999999999994 44456777899999999999999988 56 599999988776 6655444 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+..+.+..++.++..++++..++++..++++++.++|++++. .+.+|.+++++.+.++.++.+ |.|++++|++++
T Consensus 259 g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~G~~l~~~l~~ 335 (414)
T 3ndn_A 259 GPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---GGGTVVTFALDC 335 (414)
T ss_dssp CCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCC---CCceEEEEEEcC
Confidence 667788888888888888999999999999999999999876 678899999999999999875 689999999974
Q ss_pred -----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 236 -----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 236 -----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
.+...+|+++++. ++ +++|+|+.++++++|+...|..+++.++...|+.+++||||+| .++.++++++|+
T Consensus 336 ~~~~~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG-~e~~~dli~dl~ 410 (414)
T 3ndn_A 336 PEDVAKQRAFEVLDKMRL---ID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDDLIADID 410 (414)
T ss_dssp CGGGHHHHHHHHHHHCSS---SE-ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCcc---ce-EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHH
Confidence 6778999999986 44 5889999999999999999999999999999999999999999 999999999999
Q ss_pred HHH
Q 020548 311 KAL 313 (324)
Q Consensus 311 ~~l 313 (324)
++|
T Consensus 411 ~al 413 (414)
T 3ndn_A 411 RAL 413 (414)
T ss_dssp HHH
T ss_pred Hhh
Confidence 987
No 2
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=100.00 E-value=4.4e-44 Score=323.91 Aligned_cols=300 Identities=31% Similarity=0.491 Sum_probs=252.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++++++++||+|++++|+|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 107 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~~~~v~~~d~~~l~~ai-~~~t~~v~~e~p~NptG~~~ 184 (430)
T 3ri6_A 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS-FGIEVRFVDVMDSLAVEHAC-DETTKLLFLETISNPQLQVA 184 (430)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCCCCCeec
Confidence 36788889999999999999999999998866544444 79999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEE--cChhH---------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC--GPANL--------------- 142 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~--~~~~~--------------- 142 (324)
|+++|+++|+++|+++|+|++| .+....+...|+|+++.|+||+++++|..++|+++ .+.++
T Consensus 185 dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~ 264 (430)
T 3ri6_A 185 DLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP 264 (430)
T ss_dssp CHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch
Confidence 9999999999999999999999 45557788889999999999999998877778887 44333
Q ss_pred ---HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHH
Q 020548 143 ---VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 143 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~ 217 (324)
+..++.. .....|..+++..+++.+.+++.+..+++++.+++.++.++|++++. ++.+|.++++|.|.++.+
T Consensus 265 ~~~i~~~~~~---~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~ 341 (430)
T 3ri6_A 265 MAFLYKARKE---VFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKR 341 (430)
T ss_dssp GHHHHHHHHT---HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHH
T ss_pred hhHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHH
Confidence 2222221 11245677888888888888888889999999999999999999875 688999999999999999
Q ss_pred HhccCCCcce-EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~-~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
+. |.|+ +++|++++.+.+.+|++.++.. + +++|+|+.++++++|+...|..++++.+...|+.+++||+|+
T Consensus 342 ~~----g~Gg~~lsf~l~~~~~~~~~~~~l~~~---~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsv 413 (430)
T 3ri6_A 342 QF----RYAGSILTFELESKEASYRFMDALKLI---R-RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSV 413 (430)
T ss_dssp HC----SSCCSEEEEECSSHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEEC
T ss_pred hC----CCCceEEEEEECCHHHHHHHHHhCCcc---e-ecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 87 5677 9999999878899999999973 3 588999999999999999999999888888899999999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 020548 297 GYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~ 314 (324)
| .|+.++++++|+++|+
T Consensus 414 G-~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 414 G-IEEIEDLKEDILQALC 430 (430)
T ss_dssp C-SSCHHHHHHHHHHHHC
T ss_pred c-cCCHHHHHHHHHHhhC
Confidence 9 9999999999999983
No 3
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=100.00 E-value=3.7e-43 Score=315.76 Aligned_cols=299 Identities=35% Similarity=0.598 Sum_probs=262.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh-cCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+|+.. +.+++++||+|+++.+.|++....+... ..+ .|+++.+++.+|++++++++ ++++++|++++|+||+|.+
T Consensus 92 ~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~np~G~~ 168 (400)
T 3nmy_A 92 MAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT-AGLDFSFVDLTDPAAFKAAI-RADTKMVWIETPTNPMLKL 168 (400)
T ss_dssp HHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHH-HCCEEEEECTTSHHHHHHHC-CTTEEEEEEESSCTTTCCC
T ss_pred HHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhh-cCeEEEEECCCCHHHHHHHh-ccCCCEEEEECCCCCCCee
Confidence 356776 5668899999999999999887776544 334 69999999999999999999 8899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEE-EE-EcChhHHHHHHHhhhhhhhc
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAG-AV-CGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G-~i-~~~~~~~~~l~~~~~~~~~~ 156 (324)
.|+++|+++|+++|+++|+|++|+ ++...+...++|+++.|+||+++++|.+++| ++ ..++++.+.+..... .
T Consensus 169 ~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~----~ 244 (400)
T 3nmy_A 169 VDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN----S 244 (400)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH----H
T ss_pred ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH----h
Confidence 999999999999999999999994 4456777889999999999999998888767 44 557788888877665 5
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+..+.+..++.++..++.+..+++++.++++++.++|++++. .+.+|.+++++.|.++.++.+ |.|++++|+++
T Consensus 245 ~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~---g~G~~~~~~l~ 321 (400)
T 3nmy_A 245 IGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFGGIVSIVLK 321 (400)
T ss_dssp HCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEET
T ss_pred cCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCceEEEEeC
Confidence 5677788888888888888889999999999999999999876 688999999999999999875 68999999998
Q ss_pred C-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 235 T-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 235 ~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
+ .+...+|++.++.. + +++|+|+.++++++|+...|..+++..+...|++++.+|+|+| .++.++++++|+++|
T Consensus 322 ~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-le~~~dli~dl~~al 396 (400)
T 3nmy_A 322 GGFDAAKRFCEKTELF---T-LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVG-IEDLGDLRGDLERAL 396 (400)
T ss_dssp THHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCcc---e-EecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHHHHHHHH
Confidence 5 45688999999863 3 5889999999999999999999999999999999999999999 999999999999999
Q ss_pred H
Q 020548 314 S 314 (324)
Q Consensus 314 ~ 314 (324)
+
T Consensus 397 ~ 397 (400)
T 3nmy_A 397 V 397 (400)
T ss_dssp C
T ss_pred h
Confidence 7
No 4
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=100.00 E-value=6.8e-42 Score=310.47 Aligned_cols=301 Identities=31% Similarity=0.551 Sum_probs=260.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCc-eEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT-KVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~-~~v~~~~~~nptG~~~ 80 (324)
+|+..++++++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ ++++ ++|++++|+||+|.+.
T Consensus 140 ~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tv~lV~le~p~NptG~v~ 217 (445)
T 1qgn_A 140 CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELAL-NQKKVNLFFTESPTNPFLRCV 217 (445)
T ss_dssp HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHH-HHSCEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCCCCEEEEeCCCCCCCccc
Confidence 5788889988999999999999999988876544555 79999999999999999999 6778 9999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++|+|++| .++...+...++|++++|+||+++++|...+|++++++++++.+..... ..|.
T Consensus 218 dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~----~~g~ 293 (445)
T 1qgn_A 218 DIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH----ILGG 293 (445)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH----HHCC
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHH----HhCC
Confidence 9999999999999999999999 4455667778999999999999998764325999999999888876554 4566
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-H
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-E 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~ 236 (324)
.+.+..++.++..++.+..+++++.++++++.++|++++. ++.+|.+++++.|.++.++.+ +.|++++|.+++ .
T Consensus 294 ~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~g~ivsf~l~~~~ 370 (445)
T 1qgn_A 294 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDL 370 (445)
T ss_dssp CCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---CCCSEEEEEESSCH
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhcc---CCCcEEEEEECCCH
Confidence 6777777777777888888889999999999999999875 677899889999999988765 578999999984 3
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+....|++.++. ++ +++|+|+.++++++|....|..++++++..+|++++.||+|+| .++.++++++|+++++++
T Consensus 371 ~~~~~~l~~l~~---~~-i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 371 LTTAKFVDALKI---PY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFDDLKADILQALDSI 445 (445)
T ss_dssp HHHHHHHHHCSS---SE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC---ce-EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhC
Confidence 568889999875 33 5889999999999999888888888889999998899999999 999999999999999753
No 5
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=100.00 E-value=1.7e-41 Score=306.06 Aligned_cols=298 Identities=21% Similarity=0.395 Sum_probs=251.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
++|+..++.+++++||+|+++.++|+++...+...+.+ .|+++.+++.+|++++++++ +++|++|++++|+||+|.+.
T Consensus 107 t~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~d~~~le~ai-~~~tklV~~e~~~NptG~v~ 184 (415)
T 2fq6_A 107 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPGSITMEVH 184 (415)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGGC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhh-ccCCcEEEEECCCCCCCEee
Confidence 36888899989999999999999999998888655555 79999999999999999999 78899999999999999999
Q ss_pred ChHHHHHHHHh--cCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHD--KGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~--~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++|++ +|+++++|++|+ ++...|...++|++++|+||+++++|.+++|++++++++++.+..... ..
T Consensus 185 dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~----~~ 260 (415)
T 2fq6_A 185 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY----LM 260 (415)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH----HT
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHH----hc
Confidence 99999999999 999999999994 445667778999999999999999987766999998888888876654 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
|..+.+..++.++..++.+..++++..+++..+.++|++++. ++.+|.++.++.+.++.++.+ +.|++++|.+++
T Consensus 261 G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---~~g~i~sf~l~g 337 (415)
T 2fq6_A 261 GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFSFVLKK 337 (415)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEEEEESS
T ss_pred CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEECC
Confidence 666777777766666777888889999999999999999865 567899999999988887653 578899999986
Q ss_pred ---HHHHHHHHHHhhccccccccccccCCccceecc--ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 236 ---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
......|++.++. ++ +++|+|+.++++.+ |+..+|.... ...|..++.||+|+| .+++++++++|.
T Consensus 338 ~~~~~~~~~~l~~l~~---~~-~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G-~e~~~d~i~~l~ 408 (415)
T 2fq6_A 338 KLNNEELANYLDNFSL---FS-MAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIG-LEDVDDLIADLD 408 (415)
T ss_dssp CCCHHHHHHHHTTCSS---CE-ECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECC-SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCc---Ce-EeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEec-CCCHHHHHHHHH
Confidence 5689999999885 33 58899999999987 7655432110 124667799999999 999999999999
Q ss_pred HHHHhh
Q 020548 311 KALSRM 316 (324)
Q Consensus 311 ~~l~~~ 316 (324)
++|+++
T Consensus 409 ~al~~~ 414 (415)
T 2fq6_A 409 AGFARI 414 (415)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999864
No 6
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=100.00 E-value=2.4e-40 Score=297.45 Aligned_cols=295 Identities=33% Similarity=0.507 Sum_probs=254.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
++|+..++.+++++||+|+++.|+|+++...+...... .|.++.+++.+|++++++++ ++++++|++++|+||||.+.
T Consensus 91 t~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~ 168 (392)
T 3qhx_A 91 MAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTG-WNVEYTPVALADLDAVRAAI-RPTTRLIWVETPTNPLLSIA 168 (392)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHh-cCcEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCCCCcEEe
Confidence 36788899888999999999999999988887655555 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCC-CeeEEEEEcC-hhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGA-DIIAGAVCGP-ANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~-~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++|+++|+++|+|++| .++...+...++|+++.|+||+++++| .+ +|+++.+ +++.+.+..... ..
T Consensus 169 ~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~-~G~v~~~~~~~~~~l~~~~~----~~ 243 (392)
T 3qhx_A 169 DIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVV-GGALVTNDEELDQSFAFLQN----GA 243 (392)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCC-CEEEEESCHHHHHHHHHHHH----HH
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCce-EEEEEECcHHHHHHHHHHHH----hc
Confidence 9999999999999999999999 445567778899999999999999987 46 5999887 688888877665 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+....+..++.++..++.+..++++..++++++.++|++++. .+.+|.+++++.+.++.++.+ |.|++++|++++
T Consensus 244 g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~~~~l~~ 320 (392)
T 3qhx_A 244 GAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGGMVSVRMRA 320 (392)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEETT
T ss_pred CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCC---CCceEEEEEeCC
Confidence 666777777777777777888889999999999999999875 678899999999999999875 689999999985
Q ss_pred -HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 236 -EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 236 -~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
....+.|++.++. ++ +++|+|+.++++++|....|..+... ..|+.++.||||+| .+++++++++|+++|
T Consensus 321 ~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg-~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 321 GRTAAEQLCAKTNI---FI-LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLDDLKQAL 391 (392)
T ss_dssp CHHHHHHHHHHCSS---SE-ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECC-SSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCC---ce-ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEec-cCCHHHHHHHHHHHh
Confidence 5778899999986 44 48899999999998887766554443 46788899999999 999999999999987
No 7
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=100.00 E-value=3.2e-40 Score=296.45 Aligned_cols=300 Identities=35% Similarity=0.561 Sum_probs=256.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+||+|.+.|
T Consensus 85 ~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 162 (389)
T 3acz_A 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPR-FGIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSD 162 (389)
T ss_dssp HHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHH-TTCEEEEECTTCHHHHHHTC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCCeecC
Confidence 5788888888899999999999999988776443334 79999999999999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhccCC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~~~~ 159 (324)
+++|+++|+++|+++|+|++|+ ++...+.+.++|+++.|+||+++++++|++|+++.++ ++++.+..... ..+.
T Consensus 163 l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~----~~g~ 238 (389)
T 3acz_A 163 IKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK----DAGS 238 (389)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH----HHCC
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH----hcCC
Confidence 9999999999999999999994 4444677789999999999999999998669999988 88888877654 3455
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
..++..++..+..++.+..++++..++++.+.++|++++. .+.+|.+.+.+.+.++.+..+ +.|++++|.+++.+
T Consensus 239 ~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~---g~g~~~~~~l~~~~ 315 (389)
T 3acz_A 239 LMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFE 315 (389)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEESSHH
T ss_pred CCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCeEEEEEECCHH
Confidence 6677777766667777878888889999999999999875 677899988888988887653 57889999997655
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
....+++.++... .++|+|+.++++++|....|..++++++...|++++.||+|+| .+++++++++|.++|+.
T Consensus 316 ~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 316 AAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQALEL 388 (389)
T ss_dssp HHHHHHTTCSSSE----EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcE----ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 6777777766522 4778999999999999988888888888888998899999999 99999999999999864
No 8
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=100.00 E-value=1.6e-39 Score=292.97 Aligned_cols=302 Identities=28% Similarity=0.496 Sum_probs=254.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++. ++++||+|++++|+|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 93 ~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~t~~v~~~~p~nptG~~~~ 169 (403)
T 3cog_A 93 AATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-FGLKISFVDCSKIKLLEAAI-TPETKLVWIETPTNPTQKVID 169 (403)
T ss_dssp HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-GTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCeeeC
Confidence 57888888 8899999999999999987776555555 79999999988999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcC-CEEEEcCCCCcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 82 IPELSRLAHDKG-VTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 82 ~~~i~~l~~~~~-~~~ivD~~~~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
+++|+++|+++| +++|+|++|+.+ ...+.+.++|++++|+||++++++++.+|++++ ++++.+.+..... ..+
T Consensus 170 l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~----~~g 245 (403)
T 3cog_A 170 IEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQN----SLG 245 (403)
T ss_dssp HHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHH----HHC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHH----hcC
Confidence 999999999999 999999999544 346677899999999999999888632499988 4788888877655 345
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
...++..++++...++.+..+++++.+++..+.++|++++. ++.+|.+.+.+.+.++.+..+ +.|++++|.++ .
T Consensus 246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~~~~l~~~ 322 (403)
T 3cog_A 246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTGMVTFYIKGT 322 (403)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEEEEESSC
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC---CCceEEEEEecCC
Confidence 55666666666666777888888889999999999999876 678899988888888876543 57899999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+...++++.+++.. .++|+|+.++++++|+...|...+++.+...|+++++||+|+| .+++++++++|.++|+.
T Consensus 323 ~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 323 LQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LEDEEDLLEDLDQALKA 397 (403)
T ss_dssp HHHHHHHHHHCSSSE----ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcce----EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 466778888777522 3789999999999999988888888888888988899999999 99999999999999988
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
+.+
T Consensus 398 ~~~ 400 (403)
T 3cog_A 398 AHP 400 (403)
T ss_dssp HCC
T ss_pred hhc
Confidence 754
No 9
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=2.4e-39 Score=290.98 Aligned_cols=300 Identities=28% Similarity=0.453 Sum_probs=249.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++. ++++||+|+++.|+|++....+...... .|.++.+++.+| +++++++ ++++++|++++|+||||.+.|
T Consensus 81 ~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d-~~l~~~i-~~~t~lv~~~~~~nptG~~~~ 156 (393)
T 1n8p_A 81 ATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTNDLL-NDLPQLI-KENTKLVWIETPTNPTLKVTD 156 (393)
T ss_dssp HHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESSHH-HHHHHHS-CSSEEEEEECSSCTTTCCCCC
T ss_pred HHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEeCCCh-HHHHHhc-ccCceEEEEECCCCCcceecC
Confidence 57888888 8999999999999999877766444444 799999998878 9999999 788999999999999999999
Q ss_pred hHHHHHHHHhc----CCEEEEcCCCCcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhh
Q 020548 82 IPELSRLAHDK----GVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM 155 (324)
Q Consensus 82 ~~~i~~l~~~~----~~~~ivD~~~~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~ 155 (324)
+++|.++|+++ |+++|+|++|+.+ ..++...++|++++|+||+++++|+|++|+++. ++++++.+.....
T Consensus 157 l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~---- 232 (393)
T 1n8p_A 157 IQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN---- 232 (393)
T ss_dssp HHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHH----
Confidence 99999999999 9999999999443 235666789999999999999999887799987 4788888877654
Q ss_pred ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC---ceeCCCCCCCchhHHHHHHhccCCC-c-ceEEE
Q 020548 156 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKSMANKEYG-F-GGLLC 230 (324)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~-~-g~~~~ 230 (324)
..+..+.+..++.+...++.+..++++..++++.+.++|++++. .+.+|.+.+.+.+.++.+..+ + . |++++
T Consensus 233 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~---~~~~~~i~~ 309 (393)
T 1n8p_A 233 AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR---DALGGGMIS 309 (393)
T ss_dssp HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG---GGCCCSEEE
T ss_pred hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCC---CCCCccEEE
Confidence 34455566666655556667778888888999999999998864 456788888888888877543 2 4 78999
Q ss_pred EEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHH
Q 020548 231 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 231 ~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l 309 (324)
|.++ .......|++.++. ++ +++|+|+++++..+|+..+|..++++++..+|++++.||+|+| .++++++++++
T Consensus 310 ~~l~~~~~~~~~~l~~l~~---~~-~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g-~~~~~~~i~~l 384 (393)
T 1n8p_A 310 FRIKGGAEAASKFASSTRL---FT-LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IEDTDDLLEDI 384 (393)
T ss_dssp EEESSCHHHHHHHHHHCSS---SE-ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEeCCcHHHHHHHHhhCCc---ce-ECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHHH
Confidence 9997 44678889999875 33 4889999999999998888877776677778888899999999 99999999999
Q ss_pred HHHHHhhh
Q 020548 310 EKALSRMQ 317 (324)
Q Consensus 310 ~~~l~~~~ 317 (324)
.++|+++.
T Consensus 385 ~~al~~~~ 392 (393)
T 1n8p_A 385 KQALKQAT 392 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998875
No 10
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=1.8e-38 Score=286.34 Aligned_cols=303 Identities=33% Similarity=0.591 Sum_probs=250.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|.|+++...+...... .|.++.+++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 88 ~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~t~~v~l~~p~NptG~v~~ 165 (404)
T 1e5e_A 88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETPANPTLKIID 165 (404)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCcEEEEECCCCCCCcccC
Confidence 5788888888999999999999999998855433334 79999999988999999999 789999999999999999999
Q ss_pred hHHHHHHHHh-cCCEEEEcCCCCcCC-CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhcc-
Q 020548 82 IPELSRLAHD-KGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLL- 157 (324)
Q Consensus 82 ~~~i~~l~~~-~~~~~ivD~~~~~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~- 157 (324)
+++|+++|++ +|+++|+|++|+.+. ..+...++|+++.|+||+++++|+|++||+++++++++ .+..... ..
T Consensus 166 l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~----~~~ 241 (404)
T 1e5e_A 166 MERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIK----DIT 241 (404)
T ss_dssp HHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCC----CCC
T ss_pred HHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHH----hCC
Confidence 9999999999 999999999995543 35666789999999999999999995599999998887 7766544 33
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+...++..++.....+..+..+.++..++.+.+.++|++++. .+.+|.+.+.|.+.++.+..+ +.|+++.|++++
T Consensus 242 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~~~~~~~ 318 (404)
T 1e5e_A 242 GSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMITFILKS 318 (404)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCCSEEEEEETT
T ss_pred CCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEeCC
Confidence 455666655555555666777888888999999999998864 467788888888888876543 568899999985
Q ss_pred H-HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 E-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
. +...+++++++... .+.++|+.++++++|....|..+++..+...|++++++|+|+| .++.++++++|+++++
T Consensus 319 ~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~e~~~~li~~l~~al~ 393 (404)
T 1e5e_A 319 GFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIADFKQGLD 393 (404)
T ss_dssp HHHHHHHHHHTCSSSE----ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHHH
Confidence 4 44666776665422 4778999999999999988888888888888887899999999 8999999999999998
Q ss_pred hhhh
Q 020548 315 RMQD 318 (324)
Q Consensus 315 ~~~~ 318 (324)
.+-+
T Consensus 394 ~~~~ 397 (404)
T 1e5e_A 394 ALLR 397 (404)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7654
No 11
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=100.00 E-value=4e-38 Score=283.79 Aligned_cols=301 Identities=37% Similarity=0.565 Sum_probs=240.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+||||.+.|
T Consensus 91 ~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 168 (398)
T 1gc0_A 91 GAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMAD 168 (398)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCccccc
Confidence 5788888888999999999999999998887554444 79999999988999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhc-cC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALML-LG 158 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~-~~ 158 (324)
+++|+++|+++|+++|+|++|+. ....+...++|+++.|+||+++++++|++|+++.+++.++ .+..... . .+
T Consensus 169 l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~----~~~~ 244 (398)
T 1gc0_A 169 IAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK----DMTG 244 (398)
T ss_dssp HHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH----HHTC
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhh----ccCC
Confidence 99999999999999999999943 3345566789999999999999999987799999987665 4554433 3 45
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
++.++..++.+...++.+..+.++..++++.+.++|++++. .+.+|.+.+.+.+.++.+..+ +.|+++.|++++.
T Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 321 (398)
T 1gc0_A 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIAFELKGG 321 (398)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTTEEEEEETTH
T ss_pred CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC---CCceEEEEEECCC
Confidence 56667666666666677788888899999999999999875 566788877777777775432 5789999999753
Q ss_pred -HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 -EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 -~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+....++++++... .++|+|+.++++++|....|...+.+.+...|++++.||+|+| .++++++++++.++|++
T Consensus 322 ~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 322 IGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHh
Confidence 45777888877532 4678999999999999888888888888889998999999999 99999999999999986
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 397 ~ 397 (398)
T 1gc0_A 397 S 397 (398)
T ss_dssp H
T ss_pred c
Confidence 5
No 12
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=2.6e-37 Score=280.22 Aligned_cols=303 Identities=30% Similarity=0.451 Sum_probs=247.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEe-cCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++.+++++||+|+++.++|+++...+...... .|+++.++ +.+|++++++++ ++++++|++++++||+|.+.
T Consensus 84 ~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~n~~G~~~ 161 (421)
T 2ctz_A 84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIP 161 (421)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHhh-ccCCeEEEEECCCCCCCccc
Confidence 5788888888999999999999999988877443334 79999999 888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-C-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC--hhH----HHHHHHh---
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-S-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANL----VNSMMDL--- 149 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~--~~~----~~~l~~~--- 149 (324)
|+++|+++|+++|+++|+|++| + ++...+...++|++++|+||+++++|.++||+++.+ +++ .+.+...
T Consensus 162 ~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g 241 (421)
T 2ctz_A 162 DLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG 241 (421)
T ss_dssp CHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGG
T ss_pred CHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccch
Confidence 9999999999999999999999 4 233456667899999999999999998885555642 222 2223211
Q ss_pred -------------------hhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 150 -------------------HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 150 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
........|..+.+..+++...+++.+..+++++.++++++.++|++++. .+.+|.+++
T Consensus 242 ~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~ 321 (421)
T 2ctz_A 242 YHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH 321 (421)
T ss_dssp GTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT
T ss_pred hhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCC
Confidence 00001124556777777777777788888888888999999999999865 345788888
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
++.|.++.++.+ .+.|++++|++++ ......|+++++. ++ +++++|+.++++++|....|..+++..+...|+
T Consensus 322 ~~~~~~~~~~~~--~~~g~ivsf~l~~~~~~~~~~~~~l~~---~~-~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~ 395 (421)
T 2ctz_A 322 HPHHDRAQKYFK--GKPGAVLTFGLKGGYEAAKRFISRLKL---IS-HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGV 395 (421)
T ss_dssp CTTHHHHHHHHT--TCCCSEEEEEETTHHHHHHHHHHTCSS---SE-ECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTC
T ss_pred CCCHHHHHHhcc--CCCceEEEEEeCCCHHHHHHHHHhCCc---ce-ecccCCCCCceeeCCcccccccCCHHHHHhcCC
Confidence 999999988762 1578999999986 3568889999875 33 477999999999999999998888888888999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
+++.||+|+| .++.++++++|+++|
T Consensus 396 ~~~~vRlS~g-~e~~~~li~~l~~al 420 (421)
T 2ctz_A 396 SPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp CTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred CCCeEEEEeC-CCCHHHHHHHHHHHh
Confidence 9999999999 999999999999987
No 13
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=1.5e-36 Score=273.57 Aligned_cols=301 Identities=38% Similarity=0.636 Sum_probs=245.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|+|+++...+...... .|.++..++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 90 ~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 167 (398)
T 2rfv_A 90 SAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM-RPETKVVYIETPANPTLSLVD 167 (398)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSBTTTTBCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCcccC
Confidence 5788888888999999999999999998877443334 78999999989999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhcc-C
Q 020548 82 IPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLL-G 158 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~-~ 158 (324)
+++|+++|+++|+++|+|++|+ +....+...++|+++.|+||+++++|+|++||+++++++++ .+..... .. +
T Consensus 168 l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~----~~~~ 243 (398)
T 2rfv_A 168 IETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK----DITG 243 (398)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH----HTTC
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH----hCCC
Confidence 9999999999999999999995 33345666789999999999999999986699999988876 5554443 33 4
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
.+.++..++.+...++.+..+.++..++++.+.+.|++++. .+.+|.+.+.+.+.++.+..+ +.|++++|++++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~~~~~~~~ 320 (398)
T 2rfv_A 244 GCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPGGIISFEIAGG 320 (398)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEETTH
T ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEEcCC
Confidence 45555555555555566677778888899999999999874 566788877788777765432 478899999985
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
......+++.++. .| ++++.|+.++++++|....|..++.+.+...|..++.+|+|+| .++++++++++.++|+.
T Consensus 321 ~~~~~~l~~~~~~---~~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 321 LEAGRRMINSVEL---CL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHHHHHHHTTCSS---SE-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc---ce-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHh
Confidence 3456778777764 34 4779999999998988877777777777777887899999999 99999999999999976
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 396 ~ 396 (398)
T 2rfv_A 396 A 396 (398)
T ss_dssp H
T ss_pred h
Confidence 5
No 14
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-36 Score=271.70 Aligned_cols=299 Identities=32% Similarity=0.495 Sum_probs=244.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|.++.+++.+ ++++++++ ++++++|++++|+||+|.+.|
T Consensus 82 ~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~l~~~i-~~~~~~v~~~~~~n~~G~~~~ 158 (412)
T 2cb1_A 82 AATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL-MGVTVRYVDPE-PEAVREAL-SAKTRAVFVETVANPALLVPD 158 (412)
T ss_dssp HHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT-TTCEEEEECSS-HHHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCC-HHHHHHHh-ccCCeEEEEeCCCCCCccccc
Confidence 5788888888999999999999999888777554444 79999998764 99999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-------------------
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA------------------- 140 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~------------------- 140 (324)
+++|+++|+++|+++|+|++|+. +...+...++|++++|+||++++|++++||+++.++
T Consensus 159 l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (412)
T 2cb1_A 159 LEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQI 238 (412)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC------
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccc
Confidence 99999999999999999999944 345666678999999999999999998744455552
Q ss_pred --------hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCCc
Q 020548 141 --------NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDHP 210 (324)
Q Consensus 141 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~~ 210 (324)
++.+.++.... ...+..+.+..++.....++.+..+.++..++++++.++|++.+. . +..|....++
T Consensus 239 ~~~~~~~~~~~~~~r~~~~---~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p 315 (412)
T 2cb1_A 239 PWEALRARCFPERVRTLGL---SLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDP 315 (412)
T ss_dssp -HHHHGGGHHHHHHHHHHT---TTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCT
T ss_pred hhhccchHHHHHHHHHHHH---HhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence 33344443321 123445667777666667777887888888999999999998753 4 6678888889
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.|.++.++.+ +.+++++|.+.+.+....++++++++. +.|+|+.++++++|+...|..+++.++..+|+.++
T Consensus 316 ~~~~~~~~~~---~~~~iv~~~~~~~~~~~~~l~~~~i~~-----~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (412)
T 2cb1_A 316 AHRNARKYLA---SGGPILTLDLGDLERASRFLGAIRLLK-----AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPG 387 (412)
T ss_dssp THHHHHHHCS---SSCSEEEEECSSHHHHHHHHHHCSSEE-----CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTT
T ss_pred cHHHHHHhCC---CCceEEEEEeCCHHHHHHHHHhCCeee-----ecccCCCcceeecCcccccccCCHHHHHhcCCCCC
Confidence 9999999875 578899999954556777777766521 55889999999999988888888888889999899
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.||+|+| .++++++++++.++|++
T Consensus 388 ~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 388 LVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred eEEEEec-cCCHHHHHHHHHHHHhh
Confidence 9999999 99999999999999875
No 15
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=100.00 E-value=6.8e-36 Score=273.05 Aligned_cols=299 Identities=30% Similarity=0.477 Sum_probs=235.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++. ++++||+|++++|.|+++...+...... .|.++.+++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 159 ~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 159 AALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCTTTCCCCC
T ss_pred HHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCceEEEEeCCCCCCCEeec
Confidence 46766664 7899999999999999998776555544 79999999998999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccC-CCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~-g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
+++|+++|+++|+++|+|++|. +....+.+.++|++++|+||+++++ |.++ ||++++ +++.+.+..... ..+
T Consensus 236 l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~-G~l~~~~~~l~~~l~~~~~----~~g 310 (464)
T 1ibj_A 236 IRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGEKLAKEVYFLQN----SEG 310 (464)
T ss_dssp HHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCC-EEEEECSHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcE-EEEEEChHHHHHHHHHHHH----hcC
Confidence 9999999999999999999993 4444566778999999999999876 5675 999887 478888876654 345
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
....+..++++...+..+..+.++..++...+.++|++++. ++.++.+...+.+.++.+.. .+.|++++|.+++.
T Consensus 311 ~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~---~g~g~~~~~~l~~~ 387 (464)
T 1ibj_A 311 SGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA---KGAGSVFSFITGSV 387 (464)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC---SCCCSEEEEECSCH
T ss_pred CCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC---CCCceEEEEEECCH
Confidence 55566555555555666777777777888888999998763 66778887777776665432 25688999999764
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.....|++.+.. +| ++++.|..++++++|....+...+++.+...|..++++|+|+| .++.++++++|+++++.+
T Consensus 388 ~~~~~~~~~L~~---~g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 388 ALSKHLVETTKY---FS-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHHHHHHCSS---SE-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCc---ce-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHHHHHHHHhhc
Confidence 445678888875 44 4789999999999887655443333333445666789999999 899999999999998764
No 16
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=100.00 E-value=1.1e-35 Score=261.23 Aligned_cols=301 Identities=32% Similarity=0.543 Sum_probs=237.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|.++.+++..|++++++++ ++++++|++++|+||||.+.|
T Consensus 24 ~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 101 (331)
T 1pff_A 24 GAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVID 101 (331)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHTC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-cCCCeEEEEECCCCCcCcccC
Confidence 5788888888999999999999999988777433333 68899999888999999999 788999999999999999999
Q ss_pred hHHHHHHHHh-cCCEEEEcCCCCcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhc-c
Q 020548 82 IPELSRLAHD-KGVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALML-L 157 (324)
Q Consensus 82 ~~~i~~l~~~-~~~~~ivD~~~~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~-~ 157 (324)
+++|.++|++ +|+++|+|++|+.. ...+.+.++|++++|+||+++++|+|++|++++++ ++.+.+..... . .
T Consensus 102 ~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~----~~~ 177 (331)
T 1pff_A 102 IEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIK----DIT 177 (331)
T ss_dssp HHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCC----CCC
T ss_pred HHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHH----hhc
Confidence 9999999999 99999999999432 23445678999999999999999998449999998 88888876654 3 3
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+....+..++.+...+..+..+.++..++.+.+.+.|++++. ....+.+.+.+...++....+ +.+++++|.+++
T Consensus 178 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 254 (331)
T 1pff_A 178 GAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK---MFGSMIAFDVDG 254 (331)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCS---SCCSEEEEECSS
T ss_pred CCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEECC
Confidence 445555555544444555666677778888999999988753 556677777777777665432 468899999975
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
......+++..+++. .++|+|+.++++.+|....+...+...+...|.+++.+|+|+| .++++++++.+.++|+.
T Consensus 255 ~~~~~~~l~~~gI~~----~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 255 LEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG-CENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHHHHHHHHTCSSSE----ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCce----eccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEe-cCCHHHHHHHHHHHHHH
Confidence 555555555544311 2568899999999988777777777777778888899999999 99999999999999875
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 330 ~ 330 (331)
T 1pff_A 330 V 330 (331)
T ss_dssp C
T ss_pred h
Confidence 3
No 17
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=3e-34 Score=257.47 Aligned_cols=300 Identities=29% Similarity=0.448 Sum_probs=237.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|+|++....+...... .|.++..++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 78 ~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 155 (386)
T 1cs1_A 78 SAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPLLRVVD 155 (386)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-ccCCcEEEEeCCCCCCCcccC
Confidence 5788888888999999999999999877766444444 78999999988999999999 778999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC-CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhccCC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~~~~ 159 (324)
+++|.++|+++|+++|+|++|+.+. ..+...++|++++|+||++++++++++|+++.++ ++++.+..... ..+.
T Consensus 156 l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~----~~~~ 231 (386)
T 1cs1_A 156 IAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN----NIGV 231 (386)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH----HHTC
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHH----hcCC
Confidence 9999999999999999999995543 3455668999999999999998888559998875 78888877655 2334
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH-
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~- 236 (324)
...+..++.....++.+..+.++..++++.+.+.|++++. .+..|.+...+.+.++.+.. .+.|+++.|.+++.
T Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 308 (386)
T 1cs1_A 232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQ---KGFGAMLSFELDGDE 308 (386)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHC---SSCCSEEEEEESSCH
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhc---CCCceEEEEEECCCH
Confidence 4555554444445566777778888899999999998765 45568887777777776542 25788999999742
Q ss_pred HHHHHHHHHhhcccccccc--ccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQNYAQFGFM--AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+....+++.. |++ +.++|+.++++++|....|...++..+...|.+++++|+|+| .++++++++.|.++|+
T Consensus 309 ~~~~~~l~~~------gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~~i~~l~~al~ 381 (386)
T 1cs1_A 309 QTLRRFLGGL------SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFR 381 (386)
T ss_dssp HHHHHHHHTC------SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------CcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHHHHHHHH
Confidence 3333444333 332 234788889999998777666666667777887899999999 9999999999999998
Q ss_pred hhh
Q 020548 315 RMQ 317 (324)
Q Consensus 315 ~~~ 317 (324)
.+.
T Consensus 382 ~~~ 384 (386)
T 1cs1_A 382 AAN 384 (386)
T ss_dssp HHT
T ss_pred Hhh
Confidence 875
No 18
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.97 E-value=1e-29 Score=228.14 Aligned_cols=295 Identities=18% Similarity=0.202 Sum_probs=224.2
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++.++++|||+|+++. +.|..+...+. ..+.. .|+++.+++. .|++++++++ ++++++|++
T Consensus 88 ~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~-~G~~~~~v~~~~~g~~d~e~l~~ai-~~~tklV~i 165 (409)
T 3jzl_A 88 HAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKD-FHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGI 165 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGG-GTCEEEECCCCTTSCCCHHHHHHHC-CTTEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHH-cCCEEEEeCCCCCCCcCHHHHHHhc-cCCCeEEEE
Confidence 578888999999999999998 99999887652 23334 7899999987 5999999999 889999999
Q ss_pred ec----CCCCcccccChHHHHHHHHh--cCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~----~~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
++ |+||+|.+.|+++|+++|++ +|+++++|++|+.+. ..+...++|++++|+||++++++..+|||++++++
T Consensus 166 ~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 166 QRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp ECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred ECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHH
Confidence 99 99999999999999999999 999999999995543 46777899999999999999877555799999999
Q ss_pred HHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+..... +.....++.+.+. ..+++++..++.+++++.+++.++.++|+++|+++ +|. ++++.
T Consensus 246 li~~l~~~~~~~~~g~~~g~~~~~~--~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~-~~~~~-------- 313 (409)
T 3jzl_A 246 LVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGVEA-DPV-WDAPR-------- 313 (409)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC--------
T ss_pred HHHHHHHHhccccccccccccHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cCC-CCCCC--------
Confidence 9999987432 1222344444322 33455666778889999999999999999999977 576 44333
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccc----ccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
..-+++|.+++.+.+.+|++.++.....+.+ .....|++..+++.+-.+.+..+.+.....++.+.++...
T Consensus 314 -----~~~i~~i~l~~~~~~~~~~~~L~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~f~~~~~~e~~~~~~~~~~~~~~~ 388 (409)
T 3jzl_A 314 -----TDLIQSVSFHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYV 388 (409)
T ss_dssp -----SSSCCEEECSCHHHHHHHHHHHHHTSSSSTTSCCCCBCCTTCSSCEEEECCCSSTTCSSSCEEEEESSTTTEEEE
T ss_pred -----ccEEEEEEeCCHHHHHHHHHHHHhcCcccccCCCCCCCCCCCCCceeEeccccCCCcceeecCCCCCCCCeEEEE
Confidence 3347899999888999999999975544443 1244677766555554443333322222234466788888
Q ss_pred eccCCCHHHHHHHHHHHHHhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~ 316 (324)
-| -.+-+...-.+..++.++
T Consensus 389 ~~-~~~~~~~~~~~~~~~~~~ 408 (409)
T 3jzl_A 389 QG-GLTYEHIKIAVTRAIQKI 408 (409)
T ss_dssp EC-CSSHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHhh
Confidence 88 777777666666666654
No 19
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.97 E-value=1.2e-29 Score=228.33 Aligned_cols=295 Identities=18% Similarity=0.202 Sum_probs=221.1
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHH-------hhhcCcccceeEEEecC-----CCHHHHHHhhhc--CCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALL-------THFFPRACNITTTFVDI-----SDHEMVNSAIVQ--GRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~-------~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~--~~~~~ 66 (324)
+|+..++.++++|||+|++++ |.|+.+...+ ...+.. .|+++.+++. .|++++++++ + +++++
T Consensus 102 ~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~-~G~~~~~v~~~~~g~~D~e~l~~~l-~~~~~tkl 179 (427)
T 3i16_A 102 HALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVL-KEDESITL 179 (427)
T ss_dssp HHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGG-GTCEEEECCCCTTSSCCHHHHHHHH-HTCTTEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHH-cCCEEEEecCccCCCcCHHHHHHHh-hCCCCCEE
Confidence 578888999999999999999 9999888665 123333 7999999987 4999999999 5 78999
Q ss_pred EEEec----CCCCcccccChHHHHHHHHh--cCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 67 LYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 67 v~~~~----~~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|++++ |+||+|.+.|+++|+++|++ +|+++++|++|+.+. ..+...++|++++|+||++++++...+||+++
T Consensus 180 V~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~ 259 (427)
T 3i16_A 180 VHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAG 259 (427)
T ss_dssp EEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred EEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEE
Confidence 99999 99999999999999999999 999999999995543 56777899999999999999877444799999
Q ss_pred ChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 139 PANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 139 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
++++++.++.... +.+...+++. ..++++++++..+..+++++.+++.++.++|+++|.++ +|. ++++.
T Consensus 260 ~~~li~~l~~~~~~~~~g~~~~~~~--~~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~----- 330 (427)
T 3i16_A 260 TKDCIEKTSYRLTVPGIGGECGSTF--GVVRSMYQGLFLAPHISMEALKGAILCSRIMELAGFEV-MPK-YDEKR----- 330 (427)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC-----
T ss_pred CHHHHHHHHHhcccCccCccCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCC-----
Confidence 9999999987432 1111112111 12455666777788899999999999999999999977 676 44443
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccc----cccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA----VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
+.-+++|.+++.+.+.+|++.++...+.+.+. ....|++.-+.+.+-.+.+..+.+.....++.+.++
T Consensus 331 --------~~~i~~i~l~~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 402 (427)
T 3i16_A 331 --------SDIIQSIKFNDKDKLIEFCKGIQTGSPIDSFVSCEPWDMPGYTDQVIMAAGAFIQGSSIELSADAPIREPYI 402 (427)
T ss_dssp --------SSSCEEEECSSHHHHHHHHHHHHHTCSSSTTSCCCCBCC---CCCEEEEECCSSTTCSSSSEEEEESCTTCE
T ss_pred --------ccEEEEEEECCHHHHHHHHHHHhhcCcccccccCcCCCCCCCCCceeeccCcCCCCccccccCCCCCCCCeE
Confidence 23388999998889999999999755444421 244666655555544443333322222234566788
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...-| -.+-+...-.+..++.++
T Consensus 403 ~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 403 AYLQG-GLTFDHAKIGILIALSRI 425 (427)
T ss_dssp EEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred EEEcC-CccHHHHHHHHHHHHHHH
Confidence 88888 777777767777777665
No 20
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.97 E-value=1.4e-29 Score=227.94 Aligned_cols=295 Identities=20% Similarity=0.226 Sum_probs=220.1
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh-------hhcCcccceeEEEecC----CCHHHHHHhhhc--CCceEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT-------HFFPRACNITTTFVDI----SDHEMVNSAIVQ--GRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~-------~~~~~~~g~~~~~~~~----~d~~~l~~~l~~--~~~~~v 67 (324)
+|+..++.++++|||+|++++ |.|+++...+. ..... .|+++..++. .|++++++++ + +++|+|
T Consensus 103 ~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~-~G~~~~~v~~~~~~~d~e~l~~~i-~~~~~tklV 180 (427)
T 3hvy_A 103 HAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE-YGVKYKMVDLKDGKVDINTVKEEL-KKDDSIKLI 180 (427)
T ss_dssp HHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGG-GTCEEEECCCBTTBCCHHHHHHHH-HHCTTEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHH-cCCEEEEecCCCCCcCHHHHHHHh-hCCCCCEEE
Confidence 578888999999999999999 99998875551 22333 7999999987 6999999999 5 799999
Q ss_pred EEec----CCCCcccccChHHHHHHHHh--cCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 68 YFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 68 ~~~~----~~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
++++ |+||||.+.|+++|+++|++ +|+++++|++|+.+ ...|...++|++++|+||++++++...||+++++
T Consensus 181 ~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~ 260 (427)
T 3hvy_A 181 HIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK 260 (427)
T ss_dssp EEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred EEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEEC
Confidence 9999 99999999999999999999 89999999999554 3577778999999999999998765547999999
Q ss_pred hhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.++.... +.+...+.++. .+..+++++..++.++++..+++..+.++|+++|.++ +|. ++++.
T Consensus 261 ~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~~~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~------ 330 (427)
T 3hvy_A 261 EEYVTQATFRVTVPGIGGECGSTFG--VMRSLYEGLFMAPHVTIEAVKGAVFCARIMELAGFDV-LPK-YNDKR------ 330 (427)
T ss_dssp HHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC------
T ss_pred HHHHHHHHHHhhcCCcccccCCCHH--HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCC------
Confidence 999999987532 11112222222 2455566667778889999999999999999999977 576 44433
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccc----cccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA----VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
+..+++|.+++.+.+.+|++.++...+.+.+. -.+.|+++.+++.+-.+.+..+.+.....++.+.++.
T Consensus 331 -------~~li~~~~l~~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~Gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 403 (427)
T 3hvy_A 331 -------TDIIQAIKFNDEKKLIDFIKGIQTASPVDSFVQCEAWDMPGYEDKVIMAAGTFVQGASIELSADAPIREPYIG 403 (427)
T ss_dssp -------SSSEEEEECSSHHHHHHHHHHHHHTCSSSTTCCC----------CEEEECCCSSTTCSSSSEEEEESCTTCEE
T ss_pred -------ceEEEEEeCCCHHHHHHHHHHhccccccccccCCCCCCCCCCcCceeeeccccCCCccccccCCCCCCCCeeE
Confidence 34488999998889999999999755444431 2567777766666555433333332223345678899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..-| -.+-+...-.+..++.++
T Consensus 404 ~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 404 YLQG-GLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHTT
T ss_pred EEcC-CccHHHHHHHHHHHHHHh
Confidence 9888 777777766777776654
No 21
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=1.5e-29 Score=226.81 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=165.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 102 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~N 175 (385)
T 1b5p_A 102 QALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVEVETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNN 175 (385)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTTCCCHHHHHTTC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeecCcccCCCCCHHHHHHhc-CCCCEEEEEeCCCC
Confidence 57889999999999999999999999988774 267787777652 789999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|||.+++ +++|+++|+++|+++|+||+|+.+... .... +.+++++|+||+++++|+|+ ||+++++++++
T Consensus 176 PtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~ 254 (385)
T 1b5p_A 176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRI-GYACGPKEVIK 254 (385)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCC-EEEECCHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccce-EEEEeCHHHHH
Confidence 9999976 889999999999999999999665432 1222 67899999999999899997 99999999998
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSER----IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
.+...... ...+.+.+.+.++..++.. ..+++...+++.++++.+.+.|++.+..+..|.
T Consensus 255 ~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 318 (385)
T 1b5p_A 255 AMASVSRQ-STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS--------------- 318 (385)
T ss_dssp HHHHHHHT-TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS---------------
T ss_pred HHHHHHhh-ccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC---------------
Confidence 88876541 1122233333333334432 233556667788899999999998766554343
Q ss_pred cCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 221 KEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
++.++++.++. ..+..++.+.+.
T Consensus 319 ----~~~~~~~~~~~~~~~~~~l~~~l~ 342 (385)
T 1b5p_A 319 ----GAFYVLMDTSPIAPDEVRAAERLL 342 (385)
T ss_dssp ----BTTEEEEECTTTCSSHHHHHHHHH
T ss_pred ----eeEEEEEecCCCCCCHHHHHHHHH
Confidence 45677888851 123455666665
No 22
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.97 E-value=1.2e-28 Score=218.33 Aligned_cols=253 Identities=14% Similarity=0.206 Sum_probs=186.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++.+++.+ |++++++++.+ +++++|++++|+||
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~np 153 (354)
T 3ly1_A 79 EGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-----IAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNP 153 (354)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTT
T ss_pred HHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-----HcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCC
Confidence 57888999999999999999999999988774 378888888876 89999999932 78999999999999
Q ss_pred cccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc-----c----CC-CCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----RL-GADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~-----~----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+.+++.++++. +|+++|+|++|+++.... . .. +.+++++|+||+++++|.|+ ||++.++++.
T Consensus 154 tG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~ 232 (354)
T 3ly1_A 154 TGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRV-GYAVAHPTVI 232 (354)
T ss_dssp TCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCC-EEEECCHHHH
T ss_pred cCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhh-eeeecCHHHH
Confidence 9999998888888777 999999999996654321 1 22 67799999999999889997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+.+...... ...+.+.+.++..++.....+....+++.++++++.+.|++.+..+. |.
T Consensus 233 ~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~------------------ 290 (354)
T 3ly1_A 233 ALMGRYVAG---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLKLPYL-PS------------------ 290 (354)
T ss_dssp HHHGGGTTC---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC------------------
T ss_pred HHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEC-CC------------------
Confidence 888776551 22222333333334443344666777789999999999998866543 33
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.|.++++.++. +...+.+.+.. .|+ .++ |.+. + .++++|+|++ . +
T Consensus 291 -~~~~~~~~~~~--~~~~~~~~l~~---~gi-~v~-g~~~----------------------~-~~~~iRis~~-~---~ 335 (354)
T 3ly1_A 291 -EGNFVFHQLVV--PLKDYQTHMAD---AGV-LIG-RAFP----------------------P-ADNWCRISLG-T---P 335 (354)
T ss_dssp -CSSEEEEECSS--CHHHHHHHHHH---TTE-ECC-CCCT----------------------T-CTTEEEEECC-C---H
T ss_pred -CceEEEEECCC--CHHHHHHHHHH---CCE-EEe-ecCC----------------------C-CCCEEEEEcC-C---H
Confidence 46788999974 34556666653 343 223 3210 1 2589999998 3 3
Q ss_pred HHHHHHHHHHHhhh
Q 020548 304 QRWSQFEKALSRMQ 317 (324)
Q Consensus 304 ~~~~~l~~~l~~~~ 317 (324)
++++.+.++|+.+-
T Consensus 336 ~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 336 QEMQWVADTMREFR 349 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666665553
No 23
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=7.8e-29 Score=226.30 Aligned_cols=220 Identities=17% Similarity=0.193 Sum_probs=164.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc---C--CceEEE-Eec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ---G--RTKVLY-FES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~---~--~~~~v~-~~~ 71 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |+++|++++.. + ++++|+ +++
T Consensus 151 ~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~ 225 (448)
T 3aow_A 151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-----FYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPT 225 (448)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCC
Confidence 57888999999999999999999999998874 267777776652 89999999930 4 899985 588
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC---CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR---LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+. ... .+.++++.|+||+++ +|+|+ ||++++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~Glri-G~v~~~ 303 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRI-GWMVGD 303 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCC-EEEEEC
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccE-EEEEeC
Confidence 9999999986 568999999999999999999665421 112 257899999999998 89997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhC---CCceeCCCCCCCchhH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~p~~~~~~~~~ 213 (324)
+++++.+...... ...+++.+.+.++..++... .++....+++.++++.+.+.|++. +..+..|.
T Consensus 304 ~~l~~~l~~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~-------- 374 (448)
T 3aow_A 304 PGIIRKMEIAKQS-TDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPE-------- 374 (448)
T ss_dssp HHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCS--------
T ss_pred HHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCC--------
Confidence 9999988776542 22333444444444444432 234455666788999999999874 34554444
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|.++|+.++...+...+.+.+..
T Consensus 375 -----------~g~~~~v~~~~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 375 -----------GGMFIWVTLPDGIDSKKMLERAIK 398 (448)
T ss_dssp -----------BSSEEEEECSTTCCHHHHHHHHHH
T ss_pred -----------ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999743345567666654
No 24
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=1.8e-28 Score=218.91 Aligned_cols=218 Identities=19% Similarity=0.196 Sum_probs=161.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 92 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n 165 (375)
T 3op7_A 92 GANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-----SLGAEVDLWQIEEENGWLPDLEKLRQLI-RPTTKMICINNANN 165 (375)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHHHC-CTTCCEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccCCCCCCHHHHHHhh-ccCCeEEEEcCCCC
Confidence 57888999999999999999999999888774 267777776643 899999999 78999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|||.+.| +++|+++|+++|+++|+|++|+.+...+. ..+.+++++|+||.++++|.|+ ||+++++++++.+
T Consensus 166 ptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~v~~~~~l~~~~ 244 (375)
T 3op7_A 166 PTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRI-GWVAANHQVTDIL 244 (375)
T ss_dssp TTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCC-EEEECCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccce-EEEEeCHHHHHHH
Confidence 9999998 99999999999999999999966554321 1267799999999999889997 9999999999998
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ....++.+.+..+...+..... ++...+++.++++.+.+.|++.+. .+..|.
T Consensus 245 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------- 304 (375)
T 3op7_A 245 RDYRDY-TMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPA------------------- 304 (375)
T ss_dssp TTTGGG-TTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS-------------------
T ss_pred HHHHhh-hccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC-------------------
Confidence 776551 1122222222223223332222 334445568889999999998643 444343
Q ss_pred cceEEEEEeCCHHHHHHHHHHh
Q 020548 225 FGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++++.++.......+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l 326 (375)
T 3op7_A 305 VVSTSFVKIAVDMPMEDFCLQL 326 (375)
T ss_dssp SSSCEEEEECCSSCHHHHHHHH
T ss_pred CeEEEeEEcCCCCCHHHHHHHH
Confidence 4556677776333345565554
No 25
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=6.2e-29 Score=221.12 Aligned_cols=252 Identities=13% Similarity=0.205 Sum_probs=187.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+|||
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~npt 166 (365)
T 3get_A 93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-----QCGAKCYKTQSITHNLDEFKKLYETH-KDEIKLIFLCLPNNPL 166 (365)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----HHTCEEEECSSSSCCHHHHHHHHHHT-TTTEEEEEEESSCTTT
T ss_pred HHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecCCCCCCCHHHHHHHh-CCCCCEEEEcCCCCCC
Confidence 57888899999999999999999999988774 36888888886 4789999999 7899999999999999
Q ss_pred ccccChHHHHHHHH--hcCCEEEEcCCCCcCC---C-----Ccc----CCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 77 LAVANIPELSRLAH--DKGVTVVVDNTFSPLV---L-----SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 77 G~~~~~~~i~~l~~--~~~~~~ivD~~~~~~~---~-----~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|.+.|.+++.++++ ++|+++|+|++|+.+. . +.. ..+.+++++|+||+++++|.|+ ||++.++++
T Consensus 167 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~ 245 (365)
T 3get_A 167 GECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRI-GYGIANANI 245 (365)
T ss_dssp CCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCC-EEEEECHHH
T ss_pred CCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchhe-EEEEcCHHH
Confidence 99999888888887 6799999999996443 1 111 1267899999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+.+...... +..+.+.+..+..++....++....+++.++++++.+.|++++..+. |.
T Consensus 246 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~----------------- 304 (365)
T 3get_A 246 ISAFYKLRAP---FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKHNIKII-DS----------------- 304 (365)
T ss_dssp HHHHHHHSCT---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-CC-----------------
T ss_pred HHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEC-CC-----------------
Confidence 9999877652 22233333344444544444667777889999999999999876653 33
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|+++++.++.. +...+.+.+.. .|+ .++.| .. ++ ++++|+|++ .
T Consensus 305 --~~~~~~~~~~~~-~~~~~~~~l~~---~gi-~v~~g----------~~------------~~--~~~iRis~~-~--- 349 (365)
T 3get_A 305 --YTNFITYFFDEK-NSTDLSEKLLK---KGI-IIRNL----------KS------------YG--LNAIRITIG-T--- 349 (365)
T ss_dssp --SSSEEEEECSSS-CHHHHHHHHHT---TTE-ECEEC----------GG------------GT--CSEEEEECC-C---
T ss_pred --CCeEEEEECCCC-CHHHHHHHHHH---CCE-EEEEC----------cc------------CC--CCEEEEEcC-C---
Confidence 466889999743 45667777764 233 22222 11 12 488999999 2
Q ss_pred HHHHHHHHHHHHhh
Q 020548 303 DQRWSQFEKALSRM 316 (324)
Q Consensus 303 ~~~~~~l~~~l~~~ 316 (324)
+++++.+.++|+.+
T Consensus 350 ~~~i~~l~~~l~~~ 363 (365)
T 3get_A 350 SYENEKFFTEFDKI 363 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 26
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.96 E-value=3.5e-28 Score=216.66 Aligned_cols=212 Identities=17% Similarity=0.214 Sum_probs=162.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++ .|++++++++ ++++++|++++|+||||.+.+
T Consensus 100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~-~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~ 172 (370)
T 2z61_A 100 LGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-----FLGAKPVFCD-FTVESLEEAL-SDKTKAIIINSPSNPLGEVID 172 (370)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEEC-SSHHHHHHHC-CSSEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeC-CCHHHHHHhc-ccCceEEEEcCCCCCcCcccC
Confidence 57888888889999999999999999988774 3688888887 7899999999 778999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccC----CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.+ |.++|+++|+++|+||+|+.+.. +... .++|++++|+||+++++|.|+ ||+++++++++.+.....
T Consensus 173 ~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~- 249 (370)
T 2z61_A 173 RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRI-GYVISNDEIIEAILKLQQ- 249 (370)
T ss_dssp HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHH-
T ss_pred HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceE-EEEEECHHHHHHHHHHHh-
Confidence 99 99999999999999999965532 1222 267999999999998889997 999999999998877655
Q ss_pred hhhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 153 ALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
....+.+......+...++ +++...+++.++++.+.+.|++.+.++..|. .|.
T Consensus 250 ---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~ 307 (370)
T 2z61_A 250 ---NLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPI-------------------GAY 307 (370)
T ss_dssp ---HHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-------------------BTT
T ss_pred ---hcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-------------------cce
Confidence 2222233333222222232 2445566678899999999998865544333 466
Q ss_pred EEEEEeCCHHHHHHHHHHhh
Q 020548 228 LLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~ 247 (324)
++++.++. +...+.+.+.
T Consensus 308 ~~~~~~~~--~~~~~~~~l~ 325 (370)
T 2z61_A 308 YVFPNIGE--DGREFAYKLL 325 (370)
T ss_dssp EECCBCSS--CHHHHHHHHH
T ss_pred EEEEecCC--CHHHHHHHHH
Confidence 77888864 3455666654
No 27
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.96 E-value=6e-28 Score=214.59 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=185.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 95 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~npt 168 (363)
T 3ffh_A 95 ELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-----IEGAEVREIPLLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPT 168 (363)
T ss_dssp HHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-----HHTCEEEEEECCTTSCCCHHHHHHHC-CTTEEEEEEESSCTTT
T ss_pred HHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCCCCCCcCHHHHHHhc-ccCCCEEEEeCCCCCc
Confidence 57888888889999999999999999988774 368888888876 999999999 7899999999999999
Q ss_pred ccccChHHHHHHHHhc--CCEEEEcCCCCcCCC----Ccc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDK--GVTVVVDNTFSPLVL----SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~----~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|.+.|.+++.++++.+ |+++|+|++|+++.. ... ..+.++++.|+||+++++|.|+ ||++.++++++.+
T Consensus 169 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l 247 (363)
T 3ffh_A 169 GNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARV-GYGIADKEIIRQL 247 (363)
T ss_dssp CCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC-EEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhce-eeeecCHHHHHHH
Confidence 9999999999998887 999999999965432 111 1256799999999999899997 9999999999998
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh-CCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK-LGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
...... +..+.+.+..+..++....++....+++.++++++.+.|++ .+..+. |. .
T Consensus 248 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~-------------------~ 304 (363)
T 3ffh_A 248 NIVRPP---FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PA-------------------N 304 (363)
T ss_dssp HHTCCS---CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CC-------------------C
T ss_pred HHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CC-------------------C
Confidence 876551 22222333333334444345667777789999999999999 555543 33 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++++.++. +...+.+.+.. .|+ .++.|.. ++. ++++|+|++ ++++
T Consensus 305 ~~~~~~~~~~--~~~~~~~~l~~---~gi-~v~~g~~----------------------~~~-~~~iRis~~----~~~~ 351 (363)
T 3ffh_A 305 GNFVLIDLGI--EAGTIFSYLEK---NGY-ITRSGAA----------------------LGF-PTAVRITIG----KEED 351 (363)
T ss_dssp SSEEEEECSS--CHHHHHHHHHH---TTE-ECEETTT----------------------TTC-TTEEEEECC----CHHH
T ss_pred CeEEEEECCC--CHHHHHHHHHH---CCe-EEEeCcc----------------------CCC-CCeEEEECC----CHHH
Confidence 6788999974 34556666653 233 2222211 122 579999998 3344
Q ss_pred HHHHHHHHHh
Q 020548 306 WSQFEKALSR 315 (324)
Q Consensus 306 ~~~l~~~l~~ 315 (324)
++.+.++|++
T Consensus 352 i~~~~~~l~~ 361 (363)
T 3ffh_A 352 NSAVIALLEK 361 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556555544
No 28
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=7.2e-28 Score=216.14 Aligned_cols=215 Identities=19% Similarity=0.216 Sum_probs=162.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~n 185 (389)
T 1o4s_A 112 QALFNAFMALLDPGDEVIVFSPVWVSYIPQII-----LAGGTVNVVETFMSKNFQPSLEEVEGLL-VGKTKAVLINSPNN 185 (389)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECCGGGTTCCCHHHHHHTC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecCCccCCCCCHHHHHHhc-ccCceEEEEcCCCC
Confidence 57888888889999999999999999988774 267777777653 789999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... ... .++|++++|+||+++++|.|+ ||+++++++
T Consensus 186 ptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~l~~~~~~ 264 (389)
T 1o4s_A 186 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV-GYLISSEKV 264 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC-EEEECCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce-EEEEeCHHH
Confidence 9999977 889999999999999999999655431 111 368999999999998889997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
++.+.....+ .....+.+.+..+..++... ++...+++.++++.+.+.|++.+.++..|.
T Consensus 265 ~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 324 (389)
T 1o4s_A 265 ATAVSKIQSH-TTSCINTVAQYAALKALEVD--NSYMVQTFKERKNFVVERLKKMGVKFVEPE----------------- 324 (389)
T ss_dssp HHHHHHHHHH-HTCSCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----------------
T ss_pred HHHHHHHhhh-cccCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhcCCeeecCC-----------------
Confidence 9888776542 11222223333333333322 556677788999999999999865544332
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++++.++ .+..++.+.+.
T Consensus 325 --~~~~~~~~~~--~~~~~l~~~l~ 345 (389)
T 1o4s_A 325 --GAFYLFFKVR--GDDVKFCERLL 345 (389)
T ss_dssp --BSSEEEEECS--SCHHHHHHHHH
T ss_pred --cceEEEEeCC--CCHHHHHHHHH
Confidence 4667788885 22445655553
No 29
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.96 E-value=1.1e-27 Score=215.46 Aligned_cols=262 Identities=15% Similarity=0.115 Sum_probs=187.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC---CceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG---RTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~ 78 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++..|++++++++.+. ++++|++++++||||.
T Consensus 114 ~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~-----~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~ 188 (398)
T 3a2b_A 114 QSNLGPLSCLMGRNDYILLDERDHASIIDGSR-----LSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGD 188 (398)
T ss_dssp HHHHHHHHHSSCTTCEEEEETTCCHHHHHHHH-----HSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCC
T ss_pred HHHHHHHHHHhCCCCEEEECCccCHHHHHHHH-----HcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 57888999999999999999999999988874 368889999888999999999332 7999999999999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcCCC-----CccC---C--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR---L--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~---~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+.++++|.++|+++|+++|+||+|+.+.. ...+ . ++|++++|+||+++++| ||+++++++++.+..
T Consensus 189 ~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~~~~~~~l~~ 264 (398)
T 3a2b_A 189 IVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG----GFVAGDADVIDFLKH 264 (398)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC----EEEEECHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC----cEEEeCHHHHHHHHH
Confidence 99999999999999999999999954422 1111 1 25899999999998764 999999999988877
Q ss_pred hhhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 149 LHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
..........+++.+.+++ .++....++....+++.++++++.+.|++.+.++..| .|+
T Consensus 265 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~g~ 324 (398)
T 3a2b_A 265 NARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--------------------ESP 324 (398)
T ss_dssp HCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--------------------CSS
T ss_pred hcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--------------------CCC
Confidence 4321111223333333222 2333222233566778899999999999986654322 367
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHH
Q 020548 228 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 307 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~ 307 (324)
++++.++...+...+.+.+.. .|+ .+..|.. +.. +..++++|+|++ ...+++.++
T Consensus 325 ~~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~------~~~--------------~~~~~~iRis~~-~~~~~e~i~ 379 (398)
T 3a2b_A 325 ILPIFIRSNEKTFWVTKMLQD---DGV-FVNPVVS------PAV--------------PAEESLIRFSLM-ATHTYDQID 379 (398)
T ss_dssp EEEEECCCHHHHHHHHHHHHH---TTE-ECEEECT------TTS--------------CGGGCEEEEECC-TTCCHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHH---CCc-EEEeeCC------CCC--------------CCCCceEEEEEe-CCCCHHHHH
Confidence 999999865567778777764 243 2121211 000 012478999999 765666666
Q ss_pred HHHHHHHhhh
Q 020548 308 QFEKALSRMQ 317 (324)
Q Consensus 308 ~l~~~l~~~~ 317 (324)
.+.++|+.+-
T Consensus 380 ~~~~~l~~~l 389 (398)
T 3a2b_A 380 EAIEKMVKVF 389 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 30
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=7.2e-28 Score=213.62 Aligned_cols=250 Identities=16% Similarity=0.187 Sum_probs=177.6
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++| |+|+++.|+|+++...++ ..|.++..++. .|++++++++ + ++++|++++|+||
T Consensus 86 ~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~-~~~~v~l~~p~np 158 (356)
T 1fg7_A 86 EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTVPTLDNWQLDLQGISDKL-D-GVKVVYVCSPNNP 158 (356)
T ss_dssp HHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEECCCCTTSCCCHHHHHTSC-T-TEEEEEEESSCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeeCCCCCCCCHHHHHHHh-c-CCCEEEEeCCCCC
Confidence 57888899999999 999999999999998874 26778777765 2789999988 6 8999999999999
Q ss_pred cccccChHH---HHHHHHhcCCEEEEcCCCCcCC--CCcc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 76 TLAVANIPE---LSRLAHDKGVTVVVDNTFSPLV--LSPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 76 tG~~~~~~~---i~~l~~~~~~~~ivD~~~~~~~--~~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
||.+.+.++ |+++|+ +|+++|+||+|..+. .+.. ..+.++++.|+||+||++|.|+ ||+++++++++.+
T Consensus 159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l 236 (356)
T 1fg7_A 159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRC-GFTLANEEVINLL 236 (356)
T ss_dssp TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCC-EEEEECHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhh-EEEEeCHHHHHHH
Confidence 999987554 455566 899999999996554 1211 2367899999999999899997 9999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
...... +..+.+.+.++..++..... ++...+++.++++++.+.|++.+. ....|.
T Consensus 237 ~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------ 295 (356)
T 1fg7_A 237 MKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS------------------ 295 (356)
T ss_dssp HHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC------------------
T ss_pred HHhcCC---CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC------------------
Confidence 876551 22222333233333332222 556667778999999999999863 222343
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhcccccccccccc-CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|++++++++ +...+.+.+.. .|+.. .. |.. ++. ++++|+|++ .
T Consensus 296 -~~~~~~~~~~---~~~~l~~~L~~---~gI~v-~~~g~~----------------------~~~-~~~iRis~~-~--- 340 (356)
T 1fg7_A 296 -ETNYILARFK---ASSAVFKSLWD---QGIIL-RDQNKQ----------------------PSL-SGCLRITVG-T--- 340 (356)
T ss_dssp -SSSEEEEEET---THHHHHHHHHH---TTEEC-EECTTS----------------------TTC-TTEEEEECC-C---
T ss_pred -CCeEEEEECC---CHHHHHHHHHH---CCEEE-EECCCC----------------------CCC-CCeEEEEeC-C---
Confidence 5778899996 24556666653 34311 11 211 122 368999999 3
Q ss_pred HHHHHHHHHHHHhh
Q 020548 303 DQRWSQFEKALSRM 316 (324)
Q Consensus 303 ~~~~~~l~~~l~~~ 316 (324)
.++++.+.++|+.+
T Consensus 341 ~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 341 REESQRVIDALRAE 354 (356)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 45566776666543
No 31
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.96 E-value=2.8e-28 Score=218.73 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=162.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 98 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n 171 (389)
T 1gd9_A 98 QAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPVEVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPCN 171 (389)
T ss_dssp HHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEEEEECCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEeccCCccCCCCCHHHHHHhc-CcCceEEEEECCCC
Confidence 57888888889999999999999999988774 257777776642 789999999 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|+.+... ... .++|++++|+||+++++|.|+ ||++++++
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~ 250 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAPSW 250 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECCHH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce-EEEEECHH
Confidence 9999974 889999999999999999999655431 122 257899999999999889997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
+++.+.....+ .....+.+.+.++..++.... .++...+++.++++.+.+.|++.+.++..|.
T Consensus 251 ~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------- 316 (389)
T 1gd9_A 251 IIERMVKFQMY-NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK------------- 316 (389)
T ss_dssp HHHHHHHHHTT-TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-------------
T ss_pred HHHHHHHHHhh-hccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-------------
Confidence 99988876541 112222233333333443322 3455666778999999999999866544332
Q ss_pred hccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 219 ANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.|.++++.++. ..+...+.+.+.
T Consensus 317 ------~~~~~~~~~~~~~~~~~~~~~~l~ 340 (389)
T 1gd9_A 317 ------GAFYIFPRIRDTGLTSKKFSELML 340 (389)
T ss_dssp ------BTTEECCBCGGGTCCHHHHHHHHH
T ss_pred ------eeeEEEEeccCCCCCHHHHHHHHH
Confidence 45567878752 123456666654
No 32
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.96 E-value=3.5e-28 Score=217.91 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=165.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+||
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~np 175 (386)
T 1u08_A 102 EALYAAITALVRNGDEVICFDPSYDSYAPAIA-----LSGGIVKRMALQPPHFRVDWQEFAALL-SERTRLVILNTPHNP 175 (386)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeecCcccCcCCHHHHHHhh-cccCEEEEEeCCCCC
Confidence 57888888889999999999999999988774 26777777764 3799999999 788999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-C----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+.+. +. . .++|++++|+||+++++|.|+ ||+++++++
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~ 254 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPI 254 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccce-EEEEcCHHH
Confidence 999985 689999999999999999999664321 11 1 368999999999999889997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... .....+.+.+.++..++.. ..+++...+++.++++.+.+.|++.+..+..|.
T Consensus 255 ~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------- 317 (386)
T 1u08_A 255 SAEIRKVHQY-LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCE---------------- 317 (386)
T ss_dssp HHHHHHHHHH-HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC----------------
T ss_pred HHHHHHHHHh-hccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC----------------
Confidence 9888776541 1123333333333333432 233556667778999999999998876654333
Q ss_pred CCCcceEEEEEeCCH--HHHHHHHHHhh
Q 020548 222 EYGFGGLLCLDMETE--EKANRLMNYLQ 247 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~--~~~~~~~~~l~ 247 (324)
.|.++++.++.. .+...+.+.+.
T Consensus 318 ---~g~~~~~~~~~~~~~~~~~~~~~l~ 342 (386)
T 1u08_A 318 ---GTYFLLVDYSAVSTLDDVEFCQWLT 342 (386)
T ss_dssp ---BSSEEEEECTTTCCSCHHHHHHHHH
T ss_pred ---ceEEEEEecCCCCCCCHHHHHHHHH
Confidence 467899998742 23455666543
No 33
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.96 E-value=4.9e-28 Score=219.97 Aligned_cols=219 Identities=16% Similarity=0.204 Sum_probs=165.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++
T Consensus 112 ~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~ 185 (429)
T 1yiz_A 112 EALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-NEKTKM 185 (429)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHC-CTTEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCcccccccccccCcccCHHHHHHHh-ccCceE
Confidence 57888899989999999999999999988774 25666666553 3799999999 788999
Q ss_pred EEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-----CCCCcEEEeCCccccccCCCeeE
Q 020548 67 LYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-----RLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 67 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-----~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
|++++|+||||.+.+ +++|+++|+++|+++|+||+|+++... +. ..++|+++.|+||+++++|.|+
T Consensus 186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~- 264 (429)
T 1yiz_A 186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI- 264 (429)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcce-
Confidence 999999999999985 889999999999999999999654321 11 2367999999999999889997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--------IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
||+++++++++.+..... ...+.++.+.+.++..++.. ...+....+++.++++.+.+.|++.+..+..|.
T Consensus 265 G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 343 (429)
T 1yiz_A 265 GWAYGPEALLKNLQMVHQ-NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ 343 (429)
T ss_dssp EEEESCHHHHHHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEeCHHHHHHHHHHHh-hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 999999999988876544 11233333444333334433 233556667788999999999998876655443
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCH------------HHHHHHHHHhh
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETE------------EKANRLMNYLQ 247 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~------------~~~~~~~~~l~ 247 (324)
.|.+++++++.. .+...+.+.+.
T Consensus 344 -------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (429)
T 1yiz_A 344 -------------------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT 378 (429)
T ss_dssp -------------------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHH
T ss_pred -------------------cceEEEEEcccccccccccccccCCCHHHHHHHHH
Confidence 567899998742 24556666653
No 34
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=5.2e-28 Score=217.18 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=161.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |+++++++ ++++|++++|+|
T Consensus 102 ~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~----~~~~v~i~~p~n 172 (391)
T 3h14_A 102 GGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-----ALGLVPVDLPTAPENRLQPVPADFAGL----DLAGLMVASPAN 172 (391)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEECCGGGTTSCCHHHHTTS----CCSEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeecCcccCCCCCHHHHHhc----CCeEEEECCCCC
Confidence 57888999999999999999999999998874 368888887764 77777654 789999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++|+++|+||+|+.+... .... +.+++++|+||.+|++|.|+ ||++.++++.+.
T Consensus 173 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~ 251 (391)
T 3h14_A 173 PTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRV-GWMVVPEDQVRV 251 (391)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCC-EEEECCGGGHHH
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcccee-EEEEeCHHHHHH
Confidence 9999987 889999999999999999999665432 1222 57799999999999899997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccCCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+...... .....+.+.+.++...+.....+....+++.++++.+.+.|++.+... ..|.
T Consensus 252 ~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------- 311 (391)
T 3h14_A 252 VERIAQN-MFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD------------------- 311 (391)
T ss_dssp HHHHHHH-TTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC-------------------
T ss_pred HHHHHhh-hccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-------------------
Confidence 8776551 111222222223323344334466677778999999999999887633 2232
Q ss_pred cceEEEEEeCC-HHHHHHHHHHhh
Q 020548 225 FGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 225 ~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.+.++++.++. ..+...+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~ 335 (391)
T 3h14_A 312 GAFYVYADVSDLTDDSRAFAAEIL 335 (391)
T ss_dssp BTTEEEEECTTTCSCHHHHHHHHH
T ss_pred eeEEEEEecCccCCCHHHHHHHHH
Confidence 45678888863 234556666643
No 35
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-28 Score=221.40 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=159.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|+++|++++ ++++
T Consensus 129 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~ 202 (447)
T 3b46_A 129 EGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-----LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI-TSKT 202 (447)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTC-CTTE
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeCCCccccccccccccCcccCHHHHHHhh-ccCC
Confidence 57888999999999999999999999988774 25666555542 3799999999 7889
Q ss_pred eEEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC-----CCCcEEEeCCccccccCCCe
Q 020548 65 KVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-----LGADVVVHSISKFISGGADI 131 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~-----~~~d~~~~S~sK~~~~~g~r 131 (324)
++|++++|+||||.+. ++++|+++|+++|+++|+||+|..+.+. ... .++++++.|+||+++++|+|
T Consensus 203 ~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 282 (447)
T 3b46_A 203 KAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWR 282 (447)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSC
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchh
Confidence 9999999999999996 5889999999999999999999665431 111 26899999999999989999
Q ss_pred eEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 132 IAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 132 ~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
+ ||+++ ++++++.+..... ...++++.+.+.++..++... .+++...+++.++++.+.+.|++.+..+..|.
T Consensus 283 i-G~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 358 (447)
T 3b46_A 283 I-GWVLSLNAELLSYAAKAHT-RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPE-- 358 (447)
T ss_dssp C-EEEECSCHHHHHHHHHHHH-HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCS--
T ss_pred h-EEEEeCCHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC--
Confidence 7 99999 9999988876544 112333444443433344322 23555667789999999999998877665454
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 359 -----------------~g~~~~~~~~~ 369 (447)
T 3b46_A 359 -----------------GTYFVLVDFSK 369 (447)
T ss_dssp -----------------BSSEEEEECTT
T ss_pred -----------------eeEEEEEeccc
Confidence 57788998863
No 36
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=7.4e-28 Score=218.57 Aligned_cols=207 Identities=20% Similarity=0.221 Sum_probs=153.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc-----------CCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ-----------GRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~-----------~~~~~ 66 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |+++|++++.+ +++++
T Consensus 119 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~ 193 (425)
T 2r2n_A 119 QGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-----PLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKF 193 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-----GGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceE
Confidence 57889999999999999999999999988873 367777777652 79999998831 46888
Q ss_pred EEE-ecCCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC------ccC---CCCcEEEeCCccccccCCCeeE
Q 020548 67 LYF-ESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PAR---LGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 67 v~~-~~~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~------~~~---~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
|++ ++||||||.+.+.+ +|+++|+++|+++|+||+|+.+.+. ... .+.+++++|+||+++ +|+|+
T Consensus 194 v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRi- 271 (425)
T 2r2n_A 194 LYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRI- 271 (425)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCC-
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-Cccce-
Confidence 877 68999999998755 9999999999999999999654321 111 246799999999997 89997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc------ccHHHHHHHHHHHHHHHHHHHHhC--CC-ceeCC
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI------PHLGLRMKEHCHRALIFARRMKKL--GL-KVLYP 204 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~p 204 (324)
||+++++++++.+...... ...+.+.+.+.++..++... .++....+++.++++.+.+.|++. +. .+..|
T Consensus 272 G~~~~~~~l~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p 350 (425)
T 2r2n_A 272 GFLTGPKPLIERVILHIQV-STLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP 350 (425)
T ss_dssp EEEEEEHHHHHHHHHHHHT-TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred EEEecCHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC
Confidence 9999999999988876541 11222333333333333321 224445566788999999999884 43 33434
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
. +|.++|+.++.
T Consensus 351 ~-------------------~g~~~~~~~~~ 362 (425)
T 2r2n_A 351 A-------------------AGMFLWIKVKG 362 (425)
T ss_dssp S-------------------BSSEEEEEETT
T ss_pred C-------------------ceEEEEEEeCC
Confidence 3 67889999974
No 37
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=5.4e-28 Score=216.81 Aligned_cols=219 Identities=16% Similarity=0.210 Sum_probs=161.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~n 174 (388)
T 1j32_A 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVILPTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSN 174 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECCCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCEEEEecCCcccCCCCCHHHHHHhc-CcCceEEEEeCCCC
Confidence 57888999889999999999999999988774 267788777653 789999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... ... .++|+++.|+||+++++|.|+ ||+++++
T Consensus 175 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~ 253 (388)
T 1j32_A 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV-GFLAGPV 253 (388)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCC-EEEECCH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccce-EEEEeCH
Confidence 9999965 889999999999999999999665432 111 247899999999998899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+...... .....+.+.+.++...+.. ..+++...+++.++++.+.+.|++. +..+..|.
T Consensus 254 ~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------------- 319 (388)
T 1j32_A 254 PLVKAATKIQGH-STSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD------------- 319 (388)
T ss_dssp HHHHHHHHHHHT-TTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC-------------
T ss_pred HHHHHHHHHHhh-cccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-------------
Confidence 998888776541 1122222333333333432 2335667777889999999999987 44443332
Q ss_pred hccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 219 ANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.+.++++.++. ..+...+.+.+.
T Consensus 320 ------~~~~~~~~~~~~~~~~~~~~~~l~ 343 (388)
T 1j32_A 320 ------GAFYMFPSIAKTGRSSLDFCSELL 343 (388)
T ss_dssp ------BTTEECCBCGGGTCCHHHHHHHHH
T ss_pred ------eeEEEEEecCCCCCCHHHHHHHHH
Confidence 35566666642 123455666654
No 38
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.96 E-value=9e-28 Score=217.13 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=162.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 110 ~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~l~~p~n 183 (412)
T 2x5d_A 110 EGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-----IAGAQVRSVPLVPGIDFFNELERAIRES-IPKPRMMILGFPSN 183 (412)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HHTCEEEEEECSTTSCHHHHHHHHHHTE-ESCCSEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeecCCccCCCCCHHHHHHhc-ccCceEEEECCCCC
Confidence 57888899889999999999999999988774 257777776653 468888888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC------CccC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SPAR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~------~~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|+.+.. +... .+++++++|+||+++++|.|+ ||++++++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~ 262 (412)
T 2x5d_A 184 PTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRI-GFMVGNPE 262 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCC-EEEEECHH
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccce-EEEEcCHH
Confidence 9999976 67899999999999999999965542 1122 257899999999998889997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+...... ....++.+.+.++..++... .+++...+++.++++.+.+.|++.+..+..|.
T Consensus 263 ~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 326 (412)
T 2x5d_A 263 LVSALARIKSY-HDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPK--------------- 326 (412)
T ss_dssp HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCS---------------
T ss_pred HHHHHHHHHhh-hccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCC---------------
Confidence 99988876541 11223333333333344432 33566677788999999999998765543222
Q ss_pred cCCCcceEEEEEeCCHH---HHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMETEE---KANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~---~~~~~~~~l 246 (324)
.|.++++.++... +...+.+.+
T Consensus 327 ----~g~~~~~~~~~~~~~~~~~~~~~~l 351 (412)
T 2x5d_A 327 ----ASMYVWAKIPEPYAHLGSLEFAKKL 351 (412)
T ss_dssp ----BSSEEEEECCTTTGGGCHHHHHHHH
T ss_pred ----eeeEEEEEcCCccCCCCHHHHHHHH
Confidence 4667889986322 355666665
No 39
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=2.9e-27 Score=214.81 Aligned_cols=262 Identities=17% Similarity=0.176 Sum_probs=180.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|+..++++++++||+|+++.|+|+++...+. ...|.++..++.+ |++++++++.+ .++++|++
T Consensus 119 ~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 194 (428)
T 1iay_A 119 GANETIIFCLADPGDAFLVPSPYYPAFNRDLR----WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT----TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEccCCCcchHHHHH----HhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEE
Confidence 57888889999999999999999999876431 2268888887652 78999998842 37999999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cCC--C-------Cc--EEEeCCccccccCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-ARL--G-------AD--VVVHSISKFISGGA 129 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~~--~-------~d--~~~~S~sK~~~~~g 129 (324)
++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+. + ..+ + .| +++.|+||+||++|
T Consensus 195 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 195 TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 999999999998 899999999999999999999654321 1 111 1 45 99999999999899
Q ss_pred CeeEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 130 DIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 130 ~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
.|+ ||++. ++++++.+...... ..++.+.+.++..++.... .++...+++.++++++.+.|++.+..+..|
T Consensus 275 lr~-G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 350 (428)
T 1iay_A 275 FRV-GIIYSFNDDVVNCARKMSSF---GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN 350 (428)
T ss_dssp GCE-EEEEESCHHHHHHHHHHHTT---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred ceE-EEEEeCCHHHHHHHHHHHhc---ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 997 99988 67888888765431 2233344434333444332 234556667889999999999986654323
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCCH------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 278 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 278 (324)
. .|.++++.++.. .....+.+.+.. +.|+ .+ .|+..+.
T Consensus 351 ~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~gi-~v----------~~~~~~~---- 394 (428)
T 1iay_A 351 N-------------------AGLFCWMDLRPLLRESTFDSEMSLWRVIIN--DVKL-NV----------SPGSSFE---- 394 (428)
T ss_dssp S-------------------SSSEEEEECGGGCSSSSHHHHHHHHHHHHH--TSCE-EC----------EEGGGGT----
T ss_pred C-------------------eeEEEEEechhhcCCCchhHHHHHHHHHHH--hCCE-EE----------eCchhhC----
Confidence 2 477889998632 245567776653 1243 11 2211110
Q ss_pred HHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 279 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 279 ~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++++|+|++ .. +++.++.+.++|+.+
T Consensus 395 -------~~~~~~iRis~~-~~-~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 395 -------CQEPGWFRVCFA-NM-DDGTVDIALARIRRF 423 (428)
T ss_dssp -------CSSSSEEEEECS-SS-CHHHHHHHHHHHHHH
T ss_pred -------CCCCCEEEEEEe-cC-CHHHHHHHHHHHHHH
Confidence 112478999999 54 444455555555544
No 40
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=9.5e-28 Score=215.26 Aligned_cols=220 Identities=17% Similarity=0.146 Sum_probs=164.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|+++++++++++++++|++++|+
T Consensus 96 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~ 170 (391)
T 3dzz_A 96 PAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-----GNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPH 170 (391)
T ss_dssp HHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-----HTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSB
T ss_pred HHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-----HcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCC
Confidence 57888999999999999999999999988874 36778877776 489999999943799999999999
Q ss_pred CCcccc---cChHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCC---Cc--EEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS------PARLG---AD--VVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~---~d--~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+ .++++|+++|+++|+++|+|++|+.+... ....+ .| +++.|+||+++++|.|+ ||++.+
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~ 249 (391)
T 3dzz_A 171 NPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIP 249 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECC
T ss_pred CCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh-eEEEEC
Confidence 999999 56889999999999999999999655322 11222 45 99999999999889997 999887
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHH
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~ 215 (324)
+++.+.+............+.+.+.++...+.. ..+++...+++.++++++.+.|++ . +..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---------- 319 (391)
T 3dzz_A 250 NPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN---------- 319 (391)
T ss_dssp SHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC----------
T ss_pred CHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC----------
Confidence 889888877644211123333444333333332 233566677788999999999998 4 44554333
Q ss_pred HHHhccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 216 KSMANKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
.+.++++.++. ..+...+.+.+
T Consensus 320 ---------~~~~~~~~~~~~~~~~~~~~~~l 342 (391)
T 3dzz_A 320 ---------ASYLAWVDISALGMNAEDFCKYL 342 (391)
T ss_dssp ---------BSSEEEEECGGGCSCHHHHHHHH
T ss_pred ---------ceEEEEEehhhcCCCHHHHHHHH
Confidence 45667788863 13456676666
No 41
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.96 E-value=6.6e-28 Score=218.62 Aligned_cols=206 Identities=19% Similarity=0.240 Sum_probs=160.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~-~~~~ 175 (422)
T 3fvs_A 102 GALFTAFQALVDEGDEVIIIEPFFDCYEPMTM-----MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-TSRT 175 (422)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTC-CTTE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCchhhHHHHH-----HcCCEEEEEecccccccccccccccCCCCCHHHHHhhc-CCCc
Confidence 57888899999999999999999999988774 25666666653 2899999999 7889
Q ss_pred eEEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCe
Q 020548 65 KVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADI 131 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r 131 (324)
++|++++|+||||.+. ++++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||.+|++|.|
T Consensus 176 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r 255 (422)
T 3fvs_A 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWK 255 (422)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccce
Confidence 9999999999999998 58899999999999999999996654221 11 14669999999999989999
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--------CcccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--------RIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+ ||+++++++++.+..... ...+.++.+.+.++..++. ...+++...+++.++++.+.+.|++.+..+..
T Consensus 256 ~-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 333 (422)
T 3fvs_A 256 V-GWVLGPDHIMKHLRTVHQ-NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII 333 (422)
T ss_dssp C-EEEECCHHHHHHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB
T ss_pred E-EEEEeCHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC
Confidence 7 999999999988876654 1112233333333333333 13446667778899999999999998877665
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|. .|.++++.+.
T Consensus 334 ~~-------------------~~~~~~~~~~ 345 (422)
T 3fvs_A 334 PQ-------------------GSYFLITDIS 345 (422)
T ss_dssp CS-------------------BSSEEEEECH
T ss_pred CC-------------------eeeEEEEech
Confidence 65 6778888875
No 42
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.96 E-value=1.4e-27 Score=215.41 Aligned_cols=216 Identities=18% Similarity=0.184 Sum_probs=163.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------CCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------SDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------~d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|+++
T Consensus 113 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~ 186 (407)
T 3nra_A 113 GALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFS 186 (407)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH-HTTCCEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-----HcCCEEEEeecccccccCcCCCcCHHHHHHHH-hhCCcEEEEc
Confidence 57888888889999999999999999988874 36777777765 1899999999 6689999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c------cCCCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P------ARLGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~------~~~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+.+... + ...+.++++.|+||+++++|.|+ ||+
T Consensus 187 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~ 265 (407)
T 3nra_A 187 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL-GVA 265 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCC-EEE
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeE-EEE
Confidence 99999999988 899999999999999999999654321 1 11346799999999999889997 999
Q ss_pred EcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 137 CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
++++++++.+..... ....+........+...+ .+++...+++.++++++.+.|+++ +..+..|.
T Consensus 266 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------ 335 (407)
T 3nra_A 266 FGSRAIIARMEKLQA----IVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ------ 335 (407)
T ss_dssp EECHHHHHHHHHHHH----HHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCS------
T ss_pred EcCHHHHHHHHHHHh----hhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC------
Confidence 999999998887665 222222333222222222 336677778889999999999987 44544333
Q ss_pred hHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 212 HELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.|.++++.++. ......+.+.+.
T Consensus 336 -------------~~~~~~~~~~~~~~~~~~~~~~l~ 359 (407)
T 3nra_A 336 -------------AGSYLFPRLPKLAVAPAEFVKILR 359 (407)
T ss_dssp -------------BSSEECCBCCCBSSCHHHHHHHHH
T ss_pred -------------eeEEEEEeCCCCCCCHHHHHHHHH
Confidence 46788888864 334556666663
No 43
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=3.3e-28 Score=220.90 Aligned_cols=267 Identities=15% Similarity=0.208 Sum_probs=180.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc-------CCceEEE-E
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ-------GRTKVLY-F 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~-------~~~~~v~-~ 69 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++.+ .++++|+ +
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~ 194 (425)
T 1vp4_A 120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVV 194 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEEC
Confidence 57888899999999999999999999988874 267777776652 89999998833 2789985 6
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++|+||||.+.+ +++|+++|+++|+++|+||+|+.+... +. ..+.+++++|+||+++ +|.|+ ||++
T Consensus 195 ~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~ 272 (425)
T 1vp4_A 195 SNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVA 272 (425)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccce-EEEe
Confidence 899999999976 568999999999999999999665431 11 1257899999999998 89997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhC-----CCceeCCCCCCC
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKL-----GLKVLYPGLEDH 209 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~~p~~~~~ 209 (324)
+++++++.+...... .....+.+.+.++..++... ..+....+++.++++.+.+.|++. +..+..|.
T Consensus 273 ~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~---- 347 (425)
T 1vp4_A 273 GSKEFIRKIVQAKQS-ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSE---- 347 (425)
T ss_dssp CCHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS----
T ss_pred eCHHHHHHHHHHhhh-hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCC----
Confidence 999999888776542 11223333333333344322 223455566788999999999875 34444343
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
.|.++++.++...+...+.+.+.. .|+ .+. |+..+.. .+..+
T Consensus 348 ---------------~g~~~~~~~~~~~~~~~l~~~l~~---~gi-~v~----------~g~~f~~---------~~~~~ 389 (425)
T 1vp4_A 348 ---------------GGLFIWLTLPEGFDTWEMFEYAKR---KKV-FYV----------PGRVFKV---------YDEPS 389 (425)
T ss_dssp ---------------BSSEEEEECCTTCCTTTTHHHHHH---HTE-ECE----------EGGGGCT---------TCCCC
T ss_pred ---------------ccEEEEEEcCCCCCHHHHHHHHHH---CCC-EEE----------CchhhcC---------CCCCC
Confidence 577899998732223445555543 232 211 2111100 01125
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhhhhc
Q 020548 290 GLVRMSVGYLGT---LDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 290 ~~iR~s~g~~~~---~~~~~~~l~~~l~~~~~~ 319 (324)
+++|+|++ ..+ .++.++.|.++++.+.++
T Consensus 390 ~~iRis~~-~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 390 PSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp SEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999 642 333455555666555433
No 44
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.96 E-value=2e-28 Score=218.81 Aligned_cols=219 Identities=19% Similarity=0.175 Sum_probs=163.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+|||
T Consensus 98 ~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~npt 171 (376)
T 2dou_A 98 EGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-----VASLRTFLIPLREDGLADLKAVPEGV-WREAKVLLLNYPNNPT 171 (376)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HTTCEEEEECBCTTSSBCGGGSCHHH-HHHEEEEEECSSCTTT
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-----HcCCEEEEeeCCCCCCCCHHHHHHhh-ccCceEEEECCCCCCc
Confidence 57888899999999999999999999988774 26777777764 3778888888 6789999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccCC----CCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARL----GADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|.+.+ +++|+++|+++|+++|+||+|+.+.. +.... +.+++++|+||+++++|.|+ ||+++++++++
T Consensus 172 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~ 250 (376)
T 2dou_A 172 GAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRL-GFALGSEEALA 250 (376)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC-EEEEECHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhhee-EEEecCHHHHH
Confidence 99976 67889999999999999999965532 12222 57899999999998889997 99999999999
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+...... ...+.+.+.+.++...+... ..+....+++.++++.+.+.|++. ..+..|.
T Consensus 251 ~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~------------------ 310 (376)
T 2dou_A 251 RLERVKGV-IDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-LSLLPPR------------------ 310 (376)
T ss_dssp HHHHHHHH-HCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCC------------------
T ss_pred HHHHHHHh-cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCC------------------
Confidence 88876541 11222333333333344432 235566667789999999999887 5443232
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.+++++++...+...+.+.+..
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~l~~ 334 (376)
T 2dou_A 311 -ATMYLWGRLPEGVDDLEFGLRLVE 334 (376)
T ss_dssp -BSSEEEEECCTTCCHHHHHHHHHH
T ss_pred -eeEEEEEECCCCCCHHHHHHHHHH
Confidence 466788998743334566666654
No 45
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.96 E-value=3.1e-28 Score=221.75 Aligned_cols=262 Identities=14% Similarity=0.119 Sum_probs=185.9
Q ss_pred chHHHHHHHcc--CCCC--EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC--SSGG--HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd--~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++.+++ ++|| +|+++.|+|+++...++ ..|.++..++.+ |+++++++++++++++|++++
T Consensus 116 ~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~ 190 (437)
T 3g0t_A 116 QGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-----ILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSN 190 (437)
T ss_dssp HHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-----HHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEES
T ss_pred HHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-----HcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeC
Confidence 57888899988 9999 99999999999988874 267777777653 789999999667899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc------------CCCCcEEEeCCccccccCCCeeE
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA------------RLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~------------~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
|+||||.+.+ +++|+++|+++|+++|+|++|+.+... +. ..+.+++++|+||+++++|.|+
T Consensus 191 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~- 269 (437)
T 3g0t_A 191 PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRI- 269 (437)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCcccee-
Confidence 9999999986 777899999999999999999654321 11 1467899999999999889997
Q ss_pred EEEEcChhHHH-H-----------------HHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHH
Q 020548 134 GAVCGPANLVN-S-----------------MMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFA 191 (324)
Q Consensus 134 G~i~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~ 191 (324)
||++.++++++ . +..... ......+.+.+.++..++..... +....+++.++++.+.
T Consensus 270 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (437)
T 3g0t_A 270 GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY-ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMK 348 (437)
T ss_dssp EEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHH-HHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhhhhhhcccccccccchhHHHHHHHHh-hhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888 6 544333 11122333333333333433322 6777788899999999
Q ss_pred HHHHhCCCcee------CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccce
Q 020548 192 RRMKKLGLKVL------YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 265 (324)
Q Consensus 192 ~~L~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~ 265 (324)
+.|++.+..+. .|. ..+.++++.++ ..+...+.+.+.. .|+ .+.
T Consensus 349 ~~L~~~g~~~~~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~l~~~L~~---~gi-~v~------- 398 (437)
T 3g0t_A 349 KMFLDNGFNIVYDKDGNEPL------------------ADGFYFTVGYK-GMDSSKLIEKFVR---YGM-CAI------- 398 (437)
T ss_dssp HHHHTTTEEESSCEETTEEC------------------CSSSEEEEEET-TCCHHHHHHHHHH---TTE-ECE-------
T ss_pred HHHHHcCCEEeccccCCCCC------------------ceeEEEEEecC-CCCHHHHHHHHHH---cCe-EEe-------
Confidence 99999866554 131 15778999997 2345567676664 233 211
Q ss_pred eccccccccCCCCHHHHHhcCCC-CCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 266 MSCSGSSTSSELNAEEKALAGIS-AGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~-~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|.... +.. ++.+|+|++ .. +++.++.+.++|+.+.
T Consensus 399 ---~~~~~------------~~~~~~~iRis~~-~~-~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 399 ---TLKTT------------GSKRNEAMRICTS-LL-PESQFPDLEKRLQMLN 434 (437)
T ss_dssp ---ESTTT------------TCCCTTCEEEECS-SS-CGGGHHHHHHHHHHHH
T ss_pred ---ecccc------------CCCCCCEEEEEEe-cC-CHHHHHHHHHHHHHHH
Confidence 11111 111 378999999 65 4445566666665543
No 46
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.96 E-value=3e-27 Score=212.70 Aligned_cols=216 Identities=14% Similarity=0.166 Sum_probs=158.4
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++| |+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 110 ~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~n 183 (398)
T 3ele_A 110 ASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-----AAGARLVEVPADTEHFQIDFDALEERI-NAHTRGVIINSPNN 183 (398)
T ss_dssp HHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECCCTTTSSCCHHHHHHTC-CTTEEEEEECSSCT
T ss_pred HHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCCcCCcCCHHHHHHHh-CcCCCEEEEcCCCC
Confidence 57888999999999 999999999999988774 368888888764 899999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHh------cCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 75 PTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~------~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|||.+.+ +++|+++|++ +|+++|+||+|+.+.... ...+.+++++|+||+++++|.|+ ||+++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~ 262 (398)
T 3ele_A 184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERI-GYVLV 262 (398)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCC-EEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcccee-EEEEE
Confidence 9999987 6677789998 999999999996654321 12367899999999999889997 99999
Q ss_pred ChhHHH------HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 139 PANLVN------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 139 ~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
++++.+ .+..... ..............+...+... ...+++.++++++.+.|++.+..+..|.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~------- 331 (398)
T 3ele_A 263 PDEVYDKAELYAAVCGAGR---ALGYVCAPSLFQKMIVKCQGAT-GDINAYKENRDLLYEGLTRIGYHCFKPD------- 331 (398)
T ss_dssp CTTSTTHHHHHHHHHHHHH---HTTCCCSCHHHHHHHTTCTTCC-CCHHHHHHHHHHHHHHHHHHTCCEECCS-------
T ss_pred cchhhhHHHHHHHHHHHhh---hccccCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHcCCeecCCC-------
Confidence 887433 3322222 0112233333333332222221 1356678889999999998877665444
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.+.++|+.++.. +...+.+.+..
T Consensus 332 ------------~~~~~~~~~~~~-~~~~~~~~l~~ 354 (398)
T 3ele_A 332 ------------GAFYMFVKALED-DSNAFCEKAKE 354 (398)
T ss_dssp ------------BSSEEEEECSSS-CHHHHHHHHHT
T ss_pred ------------eeEEEEEEcCCC-CHHHHHHHHHH
Confidence 466689998742 35566666653
No 47
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.3e-27 Score=215.93 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=163.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++. .|++++++++ ++++++|++++|+
T Consensus 97 ~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~~~ 170 (411)
T 2o0r_A 97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-----MAGAHRVTVPLVPDGRGFALDADALRRAV-TPRTRALIINSPH 170 (411)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEEETTEEECCHHHHHHHC-CTTEEEEEEESSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEeeccccccCCCCCHHHHHHhh-ccCceEEEEeCCC
Confidence 57888888889999999999999999988774 25777666654 3899999999 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
||||.+.+ +++|+++|+++|+++|+|++|+.+... ... .++|+++.|+||+++++|.|+ ||+++++
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~ 249 (411)
T 2o0r_A 171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKI-GWACGPA 249 (411)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCE-EEEECCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceE-EEEeeCH
Confidence 99999976 589999999999999999999655321 111 357999999999999889997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++++.+...... .....+.+.+.++..++.. ..+++...+++.++++++.+.|++.+..+..|.
T Consensus 250 ~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------- 314 (411)
T 2o0r_A 250 ELIAGVRAAKQY-LSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSY-------------- 314 (411)
T ss_dssp HHHHHHHHHHHH-HTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC--------------
T ss_pred HHHHHHHHHHhh-ccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCC--------------
Confidence 999888766541 1233344444444334432 233555667778999999999998776654333
Q ss_pred ccCCCcceEEEEEeCCH--HHHHHHHHHh
Q 020548 220 NKEYGFGGLLCLDMETE--EKANRLMNYL 246 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~--~~~~~~~~~l 246 (324)
.|.++++.++.. .+...+.+.+
T Consensus 315 -----~g~~~~~~~~~~~~~~~~~~~~~l 338 (411)
T 2o0r_A 315 -----GTYFLCADPRPLGYDDSTEFCAAL 338 (411)
T ss_dssp -----BSSEEEEECGGGTCCCHHHHHHHH
T ss_pred -----eeEEEEEecCCCCCCCHHHHHHHH
Confidence 466889998631 1244565554
No 48
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=3.9e-27 Score=207.15 Aligned_cols=247 Identities=17% Similarity=0.210 Sum_probs=176.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++.++ +||+|+++.|+|+++...++ ..|.++..++.+ |+++++++ .+++++++++|+|||
T Consensus 79 ~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~---~~~~~v~i~~p~npt 148 (337)
T 3p1t_A 79 ECFDRISAEF--SSMRFVTAWPGFDGYRARIA-----VSGLRHFEIGLTDDLLLDPNDLAQV---SRDDCVVLANPSNPT 148 (337)
T ss_dssp HHHHHHHHHS--TTSEEEEESSSCSHHHHHHT-----TSCCEEEEECBCTTSSBCHHHHTTC---CTTEEEEEESSCTTT
T ss_pred HHHHHHHHhc--CCCeEEEeCCCcHHHHHHHH-----HcCCEEEEecCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCC
Confidence 4677777776 89999999999999988773 378888888754 78888775 468999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc---cC-CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP---AR-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
|.+.|++++.++|+++++ +|+||+|+.+.... .. .+.+++++|+||+++++|.|+ ||+++++++++.+......
T Consensus 149 G~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~ 226 (337)
T 3p1t_A 149 GQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRL-GALFGPSELIAAMKRKQWF 226 (337)
T ss_dssp CCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCC-EEEECCHHHHHHHHTTSCT
T ss_pred CCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchhe-EEEEeCHHHHHHHHhhcCC
Confidence 999999999999999986 56699996554221 12 267899999999999899997 9999999999988765431
Q ss_pred hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEE
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 232 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 232 (324)
...+.+.+.++..++.....+....+++.++++++.+.|++.+..+. |. .|+++++.
T Consensus 227 ---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~~~~~ 283 (337)
T 3p1t_A 227 ---CNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVA-SS-------------------EANFVLVE 283 (337)
T ss_dssp ---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC-CC-------------------SSSEEEEE
T ss_pred ---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCcCEEC-CC-------------------CCeEEEEE
Confidence 22223333333334444344566677778889999999999876554 22 36688888
Q ss_pred eCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 233 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 233 l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
.++... +.+.+.. .|+ .++.|.. ++. ++++|+|++ . ++.++.+.++
T Consensus 284 ~~~~~~---~~~~l~~---~gi-~v~~g~~----------------------~~~-~~~iRis~~-~---~~~~~~l~~a 329 (337)
T 3p1t_A 284 NAAGER---TLRFLRE---RGI-QVKDAGQ----------------------FGL-HHHIRISIG-R---EEDNDRLLAA 329 (337)
T ss_dssp CTTTHH---HHHHHHH---TTE-ECEEGGG----------------------GTC-CSEEEEECC-C---HHHHHHHHHH
T ss_pred cCCHHH---HHHHHHH---CCe-EEEECcc----------------------CCC-CCeEEEecC-C---HHHHHHHHHH
Confidence 875433 3333432 232 2222211 111 479999999 3 5566777777
Q ss_pred HHhhh
Q 020548 313 LSRMQ 317 (324)
Q Consensus 313 l~~~~ 317 (324)
|+.+.
T Consensus 330 l~~~~ 334 (337)
T 3p1t_A 330 LAEYS 334 (337)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
No 49
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.96 E-value=9e-28 Score=215.90 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=162.0
Q ss_pred chHHHHHHHccCCC-----CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-----d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++++++++| |+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|+++
T Consensus 102 ~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~g~~~d~~~l~~~~-~~~~~~v~l~ 175 (396)
T 3jtx_A 102 EALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-----LGGGEIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVC 175 (396)
T ss_dssp HHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-----HTTCEEEEEECCTTTCCCCGGGSCHHH-HHTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEeecCCCCCccCHHHHHHhh-ccCcEEEEEE
Confidence 57888999999997 799999999999988774 367888777652 778898888 6689999999
Q ss_pred cCCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC---cc-----------CCCCcEEEeCCccccccCCCeeE
Q 020548 71 SISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS---PA-----------RLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 71 ~~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~---~~-----------~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+|+||||.+.+.+ +|+++|+++|+++|+||+|+.+... +. ..+.++++.|+||.++++|.|+
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~- 254 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS- 254 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccce-
Confidence 9999999998655 5899999999999999999665432 11 2578899999999999999997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
||+++++++++.+...... .....+.+.+.++...+.....+....+++.++++.+.+.|++. ..+..|.
T Consensus 255 G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~-------- 324 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRTY-HGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV-FDVKLPD-------- 324 (396)
T ss_dssp EEEEECHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCCS--------
T ss_pred EEEEeCHHHHHHHHHHHhh-cccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCC--------
Confidence 9999999999998876551 11222333333433344444456667777889999999999876 3333233
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
.|.++|+.++. .....+.+.+
T Consensus 325 -----------~~~~~~~~~~~-~~~~~~~~~l 345 (396)
T 3jtx_A 325 -----------ASFYIWLKVPD-GDDLAFARNL 345 (396)
T ss_dssp -----------SSSEEEEECTT-SCHHHHHHHH
T ss_pred -----------eeEEEEEECCC-CCHHHHHHHH
Confidence 57789999974 2344555555
No 50
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.96 E-value=2.1e-27 Score=212.42 Aligned_cols=208 Identities=18% Similarity=0.211 Sum_probs=159.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+
T Consensus 89 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 89 EALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-----LAGAKARLVRLDLTPEGFRLDLSALEKAL-TPRTRALLLNTPM 162 (381)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEEETTEEECCHHHHHTTC-CTTEEEEEEESSC
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCCCCccCCcCHHHHHHhc-CcCCEEEEECCCC
Confidence 57888888889999999999999999988774 267777666542 899999999 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----Ccc--CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||||.+.+ +++|+++|+++|+++|+|++|+.+.. +.. ..++|+++.|+||+++++|.|+ ||++++++++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~ 241 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRV-GWIVGPKEFM 241 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCC-EEEECCTTTH
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccce-EEEEeCHHHH
Confidence 99999976 88999999999999999999965532 111 2478999999999999889997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+...... .....+.+.+.++..++.. ..+++...+++.++++++.+.|++.+.++..|.
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 305 (381)
T 1v2d_A 242 PRLAGMRQW-TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE--------------- 305 (381)
T ss_dssp HHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS---------------
T ss_pred HHHHHHHhh-cccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCC---------------
Confidence 888766541 1122333333333333332 233556677789999999999999777665443
Q ss_pred cCCCcceEEEEEeCCH
Q 020548 221 KEYGFGGLLCLDMETE 236 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~ 236 (324)
.|.++++.+++.
T Consensus 306 ----~~~~~~~~~~~~ 317 (381)
T 1v2d_A 306 ----GTYFLMAELPGW 317 (381)
T ss_dssp ----BSSEEEEECTTC
T ss_pred ----cceEEEEecChH
Confidence 466888988743
No 51
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.96 E-value=3.2e-28 Score=219.53 Aligned_cols=219 Identities=16% Similarity=0.116 Sum_probs=161.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+||
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~np 193 (404)
T 2o1b_A 120 NGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-----LADGKPVPLNLEPPHYLPDWSKVDSQI-IDKTKLIYLTYPNNP 193 (404)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-----HTTCEEEEEECCTTTCCCCGGGSCHHH-HHHEEEEEECSSCTT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEeccCcccCcCCHHHHHHhh-ccCceEEEEcCCCCC
Confidence 57888999999999999999999999998774 25777777664 2678888888 678999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccCC----CCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARL----GADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+.. +.... +.+++++|+||+++++|.|+ ||++++++++
T Consensus 194 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~ 272 (404)
T 2o1b_A 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRV-GFAVGNKDMI 272 (404)
T ss_dssp TCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCC-EEEEECHHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhhe-EeEecCHHHH
Confidence 999985 77899999999999999999966532 12222 46799999999998889997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+.+...... .....+.+.+.++..++.. ..+++...+++.++++.+.+.|++.+..+..|.
T Consensus 273 ~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 334 (404)
T 2o1b_A 273 QALKKYQTH-TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAK----------------- 334 (404)
T ss_dssp HHHHHHHHH-HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCC-----------------
T ss_pred HHHHHHHhh-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCC-----------------
Confidence 988776541 1122233333333333332 233555666778899999999999876654333
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++++.++...+...+.+.+.
T Consensus 335 --~g~~~~~~~~~~~~~~~l~~~l~ 357 (404)
T 2o1b_A 335 --GGIYVWLETPPGYDSEQFEQFLV 357 (404)
T ss_dssp --BSSEEEEECCTTCCHHHHHHHHH
T ss_pred --cceEEEEeCCCCCCHHHHHHHHH
Confidence 45678999873323445655543
No 52
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.96 E-value=1.3e-27 Score=215.12 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=161.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEE-EecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLY-FESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~-~~~~~npt 76 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++.+.++++|+ +++|+|||
T Consensus 102 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~npt 176 (397)
T 2zyj_A 102 QALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-----LQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPT 176 (397)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCC
Confidence 57888888889999999999999999988874 267777766542 899999999444789885 68999999
Q ss_pred ccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC------CCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 77 LAVANI---PELSRLAHDKGVTVVVDNTFSPLVLS------PARL------GADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 77 G~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|.+.+. ++|+++|+++|+++|+||+|+.+... ...+ +.+++++|+||+++ +|.|+ ||++++++
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~ 254 (397)
T 2zyj_A 177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRV-AFAVAHPE 254 (397)
T ss_dssp CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCC-EEEECCHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-cccee-EEEecCHH
Confidence 999874 48999999999999999999665421 1112 34599999999998 89997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC---CCceeCCCCCCCchhHHHH
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~p~~~~~~~~~~~~ 216 (324)
+++.+...... ...+++.+.+.++..++... ..+....+++.++++.+.+.|++. +..+..|.
T Consensus 255 ~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~----------- 322 (397)
T 2zyj_A 255 ALQKLVQAKQG-ADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK----------- 322 (397)
T ss_dssp HHHHHHHHHHH-HHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS-----------
T ss_pred HHHHHHHHHHh-hcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC-----------
Confidence 99888766542 11233334443443344433 234555666788999999999875 44544444
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.++++.++...+...+.+.+..
T Consensus 323 --------~g~~~~~~~~~~~~~~~~~~~l~~ 346 (397)
T 2zyj_A 323 --------GGMFVWMELPKGLSAEGLFRRALE 346 (397)
T ss_dssp --------BSSEEEEECSTTCCHHHHHHHHHH
T ss_pred --------ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999743335567666664
No 53
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.96 E-value=2.4e-27 Score=214.12 Aligned_cols=206 Identities=18% Similarity=0.213 Sum_probs=159.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------------CHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------------DHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------------d~~~l~~~l~~~~~~ 65 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++.+ |++++++++ +++++
T Consensus 96 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~-~~~~~ 169 (410)
T 3e2y_A 96 GSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-----MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF-SSKTK 169 (410)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC-CTTEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEeccccccccccccccCCcCCHHHHHhhc-CCCce
Confidence 57888899999999999999999999988774 256666666542 899999999 78899
Q ss_pred EEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCee
Q 020548 66 VLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADII 132 (324)
Q Consensus 66 ~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~ 132 (324)
+|++++|+||||.+. ++++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||.++++|.|+
T Consensus 170 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~ 249 (410)
T 3e2y_A 170 AIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKL 249 (410)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceE
Confidence 999999999999995 68899999999999999999996654321 11 145699999999999889997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--------CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--------RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
||+++++++++.+..... .....++.+.+.++...+. ...++....+++.++++.+.+.|++.+..+..|
T Consensus 250 -G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 327 (410)
T 3e2y_A 250 -GWSIGPAHLIKHLQTVQQ-NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVP 327 (410)
T ss_dssp -EEEECCHHHHHHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBC
T ss_pred -EEEEECHHHHHHHHHHHH-hhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 999999999998876654 1112233333333333333 133466677778999999999999988776655
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
. .|.++++.+.
T Consensus 328 ~-------------------~~~~~~~~~~ 338 (410)
T 3e2y_A 328 D-------------------GGYFIIADVS 338 (410)
T ss_dssp S-------------------BSSEEEEECG
T ss_pred C-------------------ccEEEEEEch
Confidence 5 5778888875
No 54
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.96 E-value=1.7e-27 Score=214.33 Aligned_cols=221 Identities=11% Similarity=0.048 Sum_probs=160.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++. .|++++++++.++++++|++++|+
T Consensus 100 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~ 174 (399)
T 1c7n_A 100 PAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (399)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC
Confidence 57888999999999999999999999988774 25777776654 379999999943789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+.+ +++|+++|+++|+++|+||+|+.+... ... .+.++++.|+||+++++|.|+ ||++.+
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~ 253 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM-SNIIIK 253 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECC
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchhe-EEEEEC
Confidence 99999988 899999999999999999999665321 111 246799999999999889997 999986
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHH
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~ 215 (324)
+++++.+............+.+.+.++..++.. ...++...+++.++++++.+.|++ . +..+..|.
T Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------- 323 (399)
T 1c7n_A 254 NPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE---------- 323 (399)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS----------
T ss_pred CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC----------
Confidence 678888877655211011222223222223322 233556666778999999999998 5 33443222
Q ss_pred HHHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 216 KSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
++.++|+.++.. .+...+.+.+.
T Consensus 324 ---------~~~~~~~~~~~~~~~~~~~~~~l~ 347 (399)
T 1c7n_A 324 ---------GTYLQWIDFRALKMDHKAMEEFMI 347 (399)
T ss_dssp ---------BSSEEEEECGGGCCCHHHHHHHHH
T ss_pred ---------ceEEEEEEcccCCCCHHHHHHHHH
Confidence 455667888631 23456666664
No 55
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=5.7e-27 Score=210.72 Aligned_cols=262 Identities=12% Similarity=0.154 Sum_probs=191.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++..|++++++.+++ .++++|++++|+|||
T Consensus 114 ~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~npt 188 (399)
T 3tqx_A 114 DANGGLFETLLGPEDAIISDELNHASIIDGIR-----LCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMD 188 (399)
T ss_dssp HHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----SCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTT
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCC
Confidence 36677788889999999999999999988773 37888989988889999998833 189999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc-------cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP-------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~-------~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|.+.|+++|.++|+++|+++|+||+|+ ++.... .. .++|++++|+||+++ |.+ |||+++++++++.+
T Consensus 189 G~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~-gG~~~~~~~~~~~~ 265 (399)
T 3tqx_A 189 GIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GAS-GGYTSGHKEIIEWL 265 (399)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSC-CEEEEECHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCc-eEEEEcCHHHHHHH
Confidence 999999999999999999999999993 432111 11 267999999999998 334 59999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
....... ..++++.+..++.+...+ .......+++.++++++.+.|++.+.++. +.
T Consensus 266 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~----------------- 325 (399)
T 3tqx_A 266 RNRSRPY--LFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLV-PG----------------- 325 (399)
T ss_dssp HHHCHHH--HSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC-----------------
T ss_pred HHhCcce--eccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcC-CC-----------------
Confidence 8764322 223344444333322222 33456777789999999999999876554 32
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|+++++.+++......+.+.+.. .|+.. ..+. .+. ....++++|+|++ ...+
T Consensus 326 --~~~~~~~~~~~~~~~~~~~~~l~~---~gi~v-~~~~------~~~--------------~~~~~~~iRi~~~-~~~~ 378 (399)
T 3tqx_A 326 --NHPIIPVMLGDAQLATNMADHLLQ---EGIYV-VGFS------YPV--------------VPMGKARIRVQMS-AVHT 378 (399)
T ss_dssp --SSSEEEEEEECHHHHHHHHHHHHH---TTEEC-CEEC------TTT--------------SCTTCEEEEEECC-TTCC
T ss_pred --CCCEEEEEeCCHHHHHHHHHHHHH---CCCEE-eeeC------CCC--------------CCCCCceEEEEee-cCCC
Confidence 477899999876677888888774 34311 1110 010 0112468999999 7777
Q ss_pred HHHHHHHHHHHHhhhh
Q 020548 303 DQRWSQFEKALSRMQD 318 (324)
Q Consensus 303 ~~~~~~l~~~l~~~~~ 318 (324)
++.++.+.++|+++-+
T Consensus 379 ~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 379 QQQLDRAIEAFGQVGK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666543
No 56
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.96 E-value=1.3e-27 Score=212.28 Aligned_cols=256 Identities=14% Similarity=0.142 Sum_probs=184.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.++-..+++..+..+++++++++|+||||.+.|
T Consensus 93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~ 167 (360)
T 3hdo_A 93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-----VQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFP 167 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-----HCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcC
Confidence 57888999999999999999999999988774 3688888887653212222221235789999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCC-cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLS-PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~-~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
++++.++|+++|+++|+||+|+.+... .. ..+.+++++|+||+++++|.|+ ||++.++++.+.+...... +
T Consensus 168 ~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~ 243 (360)
T 3hdo_A 168 LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRI-GLAIARPEVIAALDKIRDH---Y 243 (360)
T ss_dssp HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCC-EEEECCHHHHHHHHHHSCS---C
T ss_pred HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccce-eeEeeCHHHHHHHHHhCCC---C
Confidence 999999999999999999999665322 11 2367799999999999899997 9999999999999877651 2
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+.+.++..++....++....+++.++++++.+.|++.+..+. |. .|+++++.+++.
T Consensus 244 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-------------------~~~~~~~~~~~~ 303 (360)
T 3hdo_A 244 NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVI-PS-------------------QGNYLFATPPDR 303 (360)
T ss_dssp CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-CC-------------------SSSEEEEECTTC
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEc-CC-------------------CccEEEEECCCC
Confidence 2222333333334444444667777889999999999999866553 33 467888888632
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+...+.+.+.. .|+ .++.+.. ...++++|+|++ ++++++.+.++|+.+
T Consensus 304 -~~~~l~~~l~~---~gi-~v~~~~~-----------------------~~~~~~iRis~~----~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 304 -DGKRVYDGLYA---RKV-LVRHFSD-----------------------PLLAHGMRISIG----TREEMEQTLAALKEI 351 (360)
T ss_dssp -CHHHHHHHHHH---TTE-ECBCCCS-----------------------TTTTTSEEEECC----CHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHH---CCE-EEEECCC-----------------------CCCCCEEEEEcC----CHHHHHHHHHHHHHH
Confidence 35566666663 343 2111110 012478999999 456678888888887
Q ss_pred hh
Q 020548 317 QD 318 (324)
Q Consensus 317 ~~ 318 (324)
.+
T Consensus 352 ~~ 353 (360)
T 3hdo_A 352 GE 353 (360)
T ss_dssp HC
T ss_pred hc
Confidence 64
No 57
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=4.7e-27 Score=210.30 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=181.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhc-CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQ-GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~-~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|++ +...+. . .|.++..++. .|++++++++++ +++++|++++++
T Consensus 82 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 156 (386)
T 2dr1_A 82 GIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE----S-NGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNE 156 (386)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred HHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH----H-hCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeec
Confidence 57888888889999999999999998 555552 2 6788888776 489999999853 589999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh--
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-- 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~-- 149 (324)
||||.+.|+++|.++|+++|+++|+|++|+... .+....++|++++|+||+++++++ + ||++.++++++.+...
T Consensus 157 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g-~-G~~~~~~~~~~~~~~~~~ 234 (386)
T 2dr1_A 157 TSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPG-L-AIGAFSERFLEIAEKMPE 234 (386)
T ss_dssp TTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSS-C-EEEEECHHHHHHHTTCTT
T ss_pred CCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCc-e-EEEEECHHHHHHHhcCCC
Confidence 999999999999999999999999999994332 233345789999999999988643 4 9999999888776310
Q ss_pred -----------hhhh-hhccCCCCCHHH---HHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 150 -----------HQGA-LMLLGPTMNPKV---AFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 150 -----------~~~~-~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
.... ......++.... +...+.... .++...+++.++++++.+.|++.+.++..|.-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----- 309 (386)
T 2dr1_A 235 RGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPG----- 309 (386)
T ss_dssp CCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT-----
T ss_pred CceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc-----
Confidence 0000 001122333222 222222221 25567777899999999999998665543320
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
...+.++++.++...+...+.+.+.. .|+ .+..|. .. ..+++
T Consensus 310 -----------~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~~~----------~~-------------~~~~~ 351 (386)
T 2dr1_A 310 -----------HESPTITAVLTPPGIKGDEVYEAMRK---RGF-ELAKGY----------GS-------------VKEKT 351 (386)
T ss_dssp -----------CBCSSEEEEECCTTCCHHHHHHHHHH---TTE-ECEECC----------GG-------------GTTTE
T ss_pred -----------ccCCceEEEEcCCCCCHHHHHHHHHH---CCe-EEecCc----------cc-------------cCCCE
Confidence 01467899998733345667777664 233 212121 00 02478
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|+|++ ...++++++.+.++|+.+
T Consensus 352 iRi~~~-~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 352 FRIGHM-GYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp EEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHH
Confidence 999999 755555555555555443
No 58
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.96 E-value=1.7e-27 Score=211.92 Aligned_cols=252 Identities=17% Similarity=0.198 Sum_probs=182.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++ ++++|++++|+||
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~np 169 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-----FAGLEFVGVPLRADFTLDRGAMLAAM-AEHQPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-----TTTCEEEEEECCTTSCCCHHHHHHHH-HHHCCSEEEEESSCTT
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEecCCCCCCCCHHHHHHHh-hccCCCEEEEcCCCCC
Confidence 57888999999999999999999999887774 368888887753 899999999 55 8999999999999
Q ss_pred cccccC---hHHHHHHHHhc--CCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 76 TLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~--~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||.+.+ +++|+++|+++ |+++|+|++|+.+.... ...+.++++.|+||+ +++|.|+ ||++.++++.+.
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~-G~~~~~~~~~~~ 247 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRL-GYVAGDPQWLEQ 247 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCE-EEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCc-eeeeeCHHHHHH
Confidence 999964 77888889999 99999999996654221 123677999999999 8999997 999999999888
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+...... +..+.+.+..+..++....++....+++.++++++.+.|++. +..+ .|.
T Consensus 248 ~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~------------------- 304 (367)
T 3euc_A 248 LDKVRPP---YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTV-FPS------------------- 304 (367)
T ss_dssp HGGGCCS---SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE-CCC-------------------
T ss_pred HHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC-------------------
Confidence 8765541 222333333344444443345667777899999999999988 4453 343
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.|+++++.++ +...+.+.+.. .|+ .++.|... . +..++++|+|++ +++
T Consensus 305 ~~~~~~~~~~---~~~~l~~~l~~---~gi-~v~~~~~~------~---------------~~~~~~iRis~~----~~~ 352 (367)
T 3euc_A 305 AANFLLARVP---DAAQTFDRLLA---RKV-LIKNVSKM------H---------------PLLANCLRVTVS----TPE 352 (367)
T ss_dssp SSSEEEEECS---CHHHHHHHHHT---TTE-ECEECGGG------C---------------GGGTTEEEEECC----CHH
T ss_pred CCeEEEEECC---CHHHHHHHHHH---CCe-EEEECCcc------C---------------CCCCCEEEEecC----CHH
Confidence 4678899887 34556666653 343 22222110 0 112589999998 344
Q ss_pred HHHHHHHHHHhh
Q 020548 305 RWSQFEKALSRM 316 (324)
Q Consensus 305 ~~~~l~~~l~~~ 316 (324)
+++.+.++|+++
T Consensus 353 ~i~~~~~~l~~~ 364 (367)
T 3euc_A 353 ENAQFLEAFAAS 364 (367)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 59
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.96 E-value=2.3e-27 Score=211.38 Aligned_cols=249 Identities=15% Similarity=0.210 Sum_probs=181.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++ ++++|++++|+||
T Consensus 103 ~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 103 EILQQLLQAFGGPGRTALGFQPSYSMHPILAK-----GTHTEFIAVSRGADFRIDMDVALEEI-RAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEECCTTSSCCHHHHHHHH-HHHCCSEEEEESSCTT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCCcCCCCCHHHHHHHh-hccCCCEEEEeCCCCC
Confidence 57888888889999999999999999988774 267777777643 799999999 55 8899999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccC----CC-CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPAR----LG-ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~----~~-~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
||.+.|.+++.++++.+++++|+||+|+.+.. +... .+ .+++++|+||+++++|.|+ ||++.++++++.+..
T Consensus 177 tG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~ 255 (369)
T 3cq5_A 177 TGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRL-GYFVANPAFIDAVML 255 (369)
T ss_dssp TCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCC-EEEEECTHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccce-EEEEeCHHHHHHHHH
Confidence 99999999999999999999999999965542 2222 25 7799999999998889997 999999998888876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.... +..+.+.+..+..++....+++...+++.++++++.+.|++.+..+. |. .|++
T Consensus 256 ~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~ 312 (369)
T 3cq5_A 256 VRLP---YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELGYAVV-PS-------------------ESNF 312 (369)
T ss_dssp TSCT---TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHTCEEE-CC-------------------SSSE
T ss_pred cCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEC-CC-------------------CCeE
Confidence 5441 22222333333334433334556667788999999999988766554 43 4668
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++ .+...+.+.+.. .|+ .+ .|+ + .++++|+|++ . +++++.
T Consensus 313 ~~~~~~--~~~~~l~~~l~~---~gi-~v----------~~~---------------~-~~~~iRis~~-~---~~~i~~ 356 (369)
T 3cq5_A 313 VFFGDF--SDQHAAWQAFLD---RGV-LI----------RDV---------------G-IAGHLRTTIG-V---PEENDA 356 (369)
T ss_dssp EEEECC--SSHHHHHHHHHH---TTE-EC----------BCC---------------S-CTTEEEEECC-C---HHHHHH
T ss_pred EEEECC--CCHHHHHHHHHH---CCE-EE----------EEC---------------C-CCCeEEEEeC-C---HHHHHH
Confidence 899886 234456666653 333 11 111 0 1478999998 3 345566
Q ss_pred HHHHHHhh
Q 020548 309 FEKALSRM 316 (324)
Q Consensus 309 l~~~l~~~ 316 (324)
+.++|+++
T Consensus 357 ~~~~l~~~ 364 (369)
T 3cq5_A 357 FLDAAAEI 364 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 60
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.96 E-value=3.8e-27 Score=212.58 Aligned_cols=220 Identities=15% Similarity=0.197 Sum_probs=160.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh----c-CCceEEE-Eec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV----Q-GRTKVLY-FES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~----~-~~~~~v~-~~~ 71 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++. + +++++|+ +++
T Consensus 109 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 183 (407)
T 2zc0_A 109 GALDLLGRVLIDPGDVVITENPSYINTLLAFE-----QLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPT 183 (407)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCC
Confidence 57888999989999999999999999988774 267777776653 8999999993 2 2788875 688
Q ss_pred CCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC------ccCC---CCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PARL---GADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.|.+ +|+++|+++|+++|+|++|+.+... ...+ +.+++++|+||+++ +|.|+ ||++++
T Consensus 184 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~ 261 (407)
T 2zc0_A 184 GQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRI-GWIIAE 261 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCC-EEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcce-EEEecC
Confidence 999999998876 9999999999999999999655321 1122 46789999999998 79996 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhC-C-CceeCCCCCCCchhH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKL-G-LKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~-~-~~~~~p~~~~~~~~~ 213 (324)
+++++.+...... ....++.+.+..+..++... ..+....+++.++++.+.+.|++. + ..+..|.
T Consensus 262 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------- 332 (407)
T 2zc0_A 262 GEILKKVLMQKQP-IDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPI-------- 332 (407)
T ss_dssp HHHHHHHHHHHTT-TTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCS--------
T ss_pred HHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCC--------
Confidence 9999988876552 11222333333333344433 233445566788899999999874 3 3443333
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.++++.++...+...+.+.+..
T Consensus 333 -----------~~~~~~~~~~~~~~~~~l~~~l~~ 356 (407)
T 2zc0_A 333 -----------AGMFVMFFLPEGADGISFANELME 356 (407)
T ss_dssp -----------BSSEEEEECSTTCCHHHHHHHHHH
T ss_pred -----------CcEEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999643335566666653
No 61
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.96 E-value=6e-27 Score=209.68 Aligned_cols=259 Identities=12% Similarity=0.103 Sum_probs=186.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC--CceEEEEecCCCCcccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~ 79 (324)
+|+..++++++++||.|+++.|+|+.+...++ ..|.++..++..|++++++.+.+. ++++|++++|+||||.+
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~ 184 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDS 184 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCc
Confidence 46778888889999999999999999988774 368889999888999999998432 37899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCC----c----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLS----P----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~----~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
.|+++|.++|+++|+++|+||+|+.+... + ...+.|++++|+||+++++ |||+++++++++.+.....
T Consensus 185 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~----GG~~~~~~~~~~~l~~~~~ 260 (384)
T 1bs0_A 185 APLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSSTVADYLLQFAR 260 (384)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhcc----CcEEEeCHHHHHHHHHhch
Confidence 99999999999999999999999433211 1 1235899999999999865 4999999999888876532
Q ss_pred hhhhccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 152 GALMLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.. ..+.++++...+. .+.... +.+...+++.++++++.+.|++.+.++. |. .+
T Consensus 261 ~~--~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~ 318 (384)
T 1bs0_A 261 HL--IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLA-DS-------------------CS 318 (384)
T ss_dssp HH--HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEEC-SC-------------------CS
T ss_pred hh--hcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCccc-CC-------------------CC
Confidence 11 1122233332222 233333 3446667788999999999998876543 32 46
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
+++++.++.......+.+.+.. .|+ .+..+.. +.. ...++++|+|++ ...+++++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~------~~~--------------~~~~~~~Ri~~~-~~~~~~~i 373 (384)
T 1bs0_A 319 AIQPLIVGDNSRALQLAEKLRQ---QGC-WVTAIRP------PTV--------------PAGTARLRLTLT-AAHEMQDI 373 (384)
T ss_dssp SBCCEEEESHHHHHHHHHHHHH---TTE-ECCEECT------TSS--------------CTTCEEECCBCC-TTCCHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHH---CCc-EEEeecC------CCC--------------CCCCceEEEEEc-CCCCHHHH
Confidence 6888888755567778877764 243 2121111 100 112478999999 87777777
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+++
T Consensus 374 ~~~~~~l~~~ 383 (384)
T 1bs0_A 374 DRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8777777654
No 62
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.96 E-value=3.1e-27 Score=214.60 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=161.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++..++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 129 ~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~n 202 (427)
T 3dyd_A 129 QAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-----SMGIEVKLYNLLPEKSWEIDLKQLEYLI-DEKTACLIVNNPSN 202 (427)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHSSC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHh-ccCCCEEEEECCCC
Confidence 57888999999999999999999999988774 267777766542 899999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCC---CcEEEeCCccccccCCCeeEEEEEcC---
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLG---ADVVVHSISKFISGGADIIAGAVCGP--- 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~---~d~~~~S~sK~~~~~g~r~~G~i~~~--- 139 (324)
|||.+.+ +++|+++|+++|+++|+|++|+++.... ...+ ..++++|+||.|+++|.|+ ||++++
T Consensus 203 ptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~ri-G~~~~~~~~ 281 (427)
T 3dyd_A 203 PCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRL-GWILIHDRR 281 (427)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCC-EEEEEECST
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcce-EEEEecCcc
Confidence 9999998 9999999999999999999997654221 1122 3488999999999999997 999876
Q ss_pred ----hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchh
Q 020548 140 ----ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHH 212 (324)
Q Consensus 140 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~ 212 (324)
+++.+.+...... ...++.+.+.++..++. ...++....+++.++++.+.+.|++. +..+..|.
T Consensus 282 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~------- 352 (427)
T 3dyd_A 282 DIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS------- 352 (427)
T ss_dssp TSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS-------
T ss_pred hhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC-------
Confidence 4577677655431 13333344444443443 23345667778899999999999998 44555454
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 246 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l 246 (324)
.|.++++.++.. .+...+++.+
T Consensus 353 ------------~g~~~~~~l~~~~~~~~~~~~~~~~~l 379 (427)
T 3dyd_A 353 ------------GAMYLMVGIEMEHFPEFENDVEFTERL 379 (427)
T ss_dssp ------------BTTEEEEEECGGGCTTCSSHHHHHHHH
T ss_pred ------------eeEEEEEecCHhhcCCCCCHHHHHHHH
Confidence 577888888621 2345566555
No 63
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.96 E-value=7.1e-27 Score=208.99 Aligned_cols=220 Identities=16% Similarity=0.105 Sum_probs=160.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~ 166 (383)
T 3kax_A 93 PALSTSIQAFTKENESVLVQPPIYPPFFEMVT-----TNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCSPH 166 (383)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCHHHHHHHH-----HTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEESSB
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-----HcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeCCC
Confidence 57888899999999999999999999988774 36777777765 3899999999 8899999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC-----CCcEEEeCCccccccCCCeeEEEEEc-
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL-----GADVVVHSISKFISGGADIIAGAVCG- 138 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~-----~~d~~~~S~sK~~~~~g~r~~G~i~~- 138 (324)
||||.+.+ +++|+++|+++|+++|+||+|+.+... .... +.++++.|+||.++++|.|+ ||++.
T Consensus 167 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~ 245 (383)
T 3kax_A 167 NPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQA-SIIIIP 245 (383)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECC
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhh-eEEEeC
Confidence 99999986 556677799999999999999665432 1111 46699999999999889997 99987
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhC--CCceeCCCCCCCchhHHH
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~~~~~~~~~ 215 (324)
++++.+.+............+.+.+.++..++... ..++...+++.++++++.+.|++. +..+..|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---------- 315 (383)
T 3kax_A 246 NEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPE---------- 315 (383)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCS----------
T ss_pred CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----------
Confidence 67888888776552111122222222333333332 225566677889999999999984 44554333
Q ss_pred HHHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 216 KSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
.+.++++.++.. .+...+.+.+.
T Consensus 316 ---------~~~~~~~~~~~~~~~~~~~~~~l~ 339 (383)
T 3kax_A 316 ---------GSFLLWIDCSALNLSQDERTKLLE 339 (383)
T ss_dssp ---------BSSEEEEECGGGCCCHHHHHHHHH
T ss_pred ---------ceEEEEEEccccCCCHHHHHHHHH
Confidence 455667888631 34566777764
No 64
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=7.4e-27 Score=210.29 Aligned_cols=260 Identities=13% Similarity=0.149 Sum_probs=185.3
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--C---CceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--G---RTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--~---~~~~v~~~~~~nptG 77 (324)
|+..++++++++||+|+++.|+|+++...++ ..|.++..++..|++++++++++ + ++++|++++|+||||
T Consensus 117 a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG 191 (401)
T 1fc4_A 117 ANGGLFETLLGAEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDG 191 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----TSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTT
T ss_pred HHHHHHHHHcCCCCEEEEcchhHHHHHHHHH-----HcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCC
Confidence 5666777888999999999999988877663 37889989888899999998832 1 789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCCCC-c------cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-P------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~-~------~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.++++|.++|+++|+++|+||+|+ ++... . .. .++|++++|+||+++++. |||+++++++++.+.
T Consensus 192 ~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~~~~~~~~~~~l~ 268 (401)
T 1fc4_A 192 VIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKEVVEWLR 268 (401)
T ss_dssp EECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEEEEcCHHHHHHHH
Confidence 99999999999999999999999994 66421 0 12 257999999999994322 499999999998887
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ....++.....+.+...++. .+...+++.++++++.+.|++.+.++. |.
T Consensus 269 ~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 326 (401)
T 1fc4_A 269 QRSRPY--LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLA-GA------------------- 326 (401)
T ss_dssp HHCHHH--HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBC-CS-------------------
T ss_pred HhCcCc--eeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCccc-CC-------------------
Confidence 654311 11223333333332222222 245667788999999999999876543 43
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.|+++++.+++......+.+.+.. .|+ .+..+.. +.. +..++++|+|++ ...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~------~~~--------------~~~~~~iRi~~~-~~~~~~ 381 (401)
T 1fc4_A 327 DHAIIPVMLGDAVVAQKFARELQK---EGI-YVTGFFY------PVV--------------PKGQARIRTQMS-AAHTPE 381 (401)
T ss_dssp SSSEEEEEEECHHHHHHHHHHHHH---TTE-ECCEECT------TSS--------------CTTCEEEEEECC-TTCCHH
T ss_pred CCCEEEEEcCChHHHHHHHHHHHH---CCc-EEeeecC------CCC--------------CCCCceEEEEeC-CCCCHH
Confidence 577999999765567778777764 243 2121111 100 112468999999 776677
Q ss_pred HHHHHHHHHHhhh
Q 020548 305 RWSQFEKALSRMQ 317 (324)
Q Consensus 305 ~~~~l~~~l~~~~ 317 (324)
+++.+.++|+++-
T Consensus 382 ~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 382 QITRAVEAFTRIG 394 (401)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777666666553
No 65
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.95 E-value=9.7e-27 Score=211.85 Aligned_cols=219 Identities=18% Similarity=0.160 Sum_probs=159.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|+..++.+++++||+|+++.|+|+++...+. ...|.++..++.+ |++++++++.+ .++++|++
T Consensus 122 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i 197 (435)
T 3piu_A 122 SANETFIFCLADPGEAVLIPTPYYPGFDRDLK----WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 197 (435)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT----TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCccccHHHHHH----HhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57888999999999999999999999887652 1268888777753 79999999833 28999999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----------C---------CCCcEEEeCCcccccc
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA----------R---------LGADVVVHSISKFISG 127 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----------~---------~~~d~~~~S~sK~~~~ 127 (324)
++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+... + .+.+++++|+||.+|+
T Consensus 198 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~ 277 (435)
T 3piu_A 198 TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 277 (435)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCC
Confidence 999999999976 57888899999999999999965332110 1 2234899999999998
Q ss_pred CCCeeEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 128 GADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 128 ~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
+|.|+ ||+++ ++++.+.+...... ...+.+.+..+..++..... +....+++.++++++.+.|++.+.++.
T Consensus 278 ~G~r~-G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 353 (435)
T 3piu_A 278 PGFRV-GAIYSNDDMVVAAATKMSSF---GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL 353 (435)
T ss_dssp GGGCE-EEEEESCHHHHHHHHHHGGG---SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC
T ss_pred CceeE-EEEEeCCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 89997 99988 56677777655441 22333344444444443332 334556678889999999998877655
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH------HHHHHHHHhh
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE------KANRLMNYLQ 247 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~------~~~~~~~~l~ 247 (324)
.|. .|.++++.++... ....+.+.+.
T Consensus 354 ~~~-------------------~g~~~~~~l~~~~~~~~~~~~~~~~~~l~ 385 (435)
T 3piu_A 354 NGN-------------------AGLFCWVDMRHLLRSNTFEAEMELWKKIV 385 (435)
T ss_dssp CCC-------------------SSSEEEEECGGGSSSSSHHHHHHHHHHHH
T ss_pred CCC-------------------eeEEEEEEcccccccCCchhHHHHHHHHH
Confidence 333 5678999987321 4556666654
No 66
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.95 E-value=4.5e-27 Score=212.18 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=160.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~n 185 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEYRTIEEEDWQPDIDDIRKKI-TDRTKAIAVINPNN 185 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEEEGGGTSEECHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeecCCCcCCcCCHHHHHHhh-CcCceEEEEECCCC
Confidence 57888888889999999999999999988774 257776666542 799999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC--CCC-cEEEeCCccccccCCCeeEEEEE--cCh-
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--LGA-DVVVHSISKFISGGADIIAGAVC--GPA- 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~--~~~-d~~~~S~sK~~~~~g~r~~G~i~--~~~- 140 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... ... .+. +++++|+||+++++|.|+ ||++ .++
T Consensus 186 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~ 264 (406)
T 1xi9_A 186 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL-GYMYFVDPEN 264 (406)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC-EEEEEECTTC
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEE-EEEEEecCch
Confidence 9999976 889999999999999999999655431 111 256 899999999999889997 9998 898
Q ss_pred ---hHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHH
Q 020548 141 ---NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELL 215 (324)
Q Consensus 141 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~ 215 (324)
++++.+...... . ...+.+.+.++..++. ....++...+++.++++.+.+.|++.+ ..+..|.
T Consensus 265 ~~~~l~~~l~~~~~~-~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---------- 332 (406)
T 1xi9_A 265 KLSEVREAIDRLARI-R-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ---------- 332 (406)
T ss_dssp TTHHHHHHHHHHHHH-T-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----------
T ss_pred hHHHHHHHHHHHHHh-h-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC----------
Confidence 899888776552 1 2223333333333443 323355666778899999999999873 3433222
Q ss_pred HHHhccCCCcceEEEEEeCC--HHHHHHHHHHhh
Q 020548 216 KSMANKEYGFGGLLCLDMET--EEKANRLMNYLQ 247 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~ 247 (324)
.|.++++.++. ..+..++.+.+.
T Consensus 333 ---------~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (406)
T 1xi9_A 333 ---------GAFYIFPKIEVGPWKNDKEFVLDVL 357 (406)
T ss_dssp ---------BSSEECCEECSCSCSSHHHHHHHHH
T ss_pred ---------eeEEEEEecCccCCCCHHHHHHHHH
Confidence 35566667753 223456666553
No 67
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.95 E-value=2.8e-27 Score=212.20 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=160.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++ +++|++++|
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~-~~~v~i~~p 173 (391)
T 4dq6_A 101 PAISLLINELTKANDKIMIQEPVYSPFNSVVK-----NNNRELIISPLQKLENGNYIMDYEDIENKI-KD-VKLFILCNP 173 (391)
T ss_dssp HHHHHHHHHHSCTTCEEEECSSCCTHHHHHHH-----HTTCEEEECCCEECTTSCEECCHHHHHHHC-TT-EEEEEEESS
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHH-----HcCCeEEeeeeeecCCCceEeeHHHHHHHh-hc-CCEEEEECC
Confidence 57888899999999999999999999988874 367788777654 899999999 65 999999999
Q ss_pred CCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cCC-----CCcEEEeCCccccccCCCeeEEEEEc
Q 020548 73 SNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----P-ARL-----GADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 73 ~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~~-----~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+||||.+. ++++|+++|+++|+++|+||+|+.+... + ... +.++++.|+||+++++|.|+ ||++.
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~ 252 (391)
T 4dq6_A 174 HNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVL 252 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEEC
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccce-EEEEe
Confidence 99999994 5889999999999999999999665432 1 122 34499999999999889997 99988
Q ss_pred Ch-hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHH
Q 020548 139 PA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 139 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~ 214 (324)
++ ++.+.+............+.+.+.++...+.. ..+++...+++.++++.+.+.|++ . +..+..|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------- 323 (391)
T 4dq6_A 253 PDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE--------- 323 (391)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS---------
T ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC---------
Confidence 75 88888877654211111222222222223322 223556667788999999999988 4 44554333
Q ss_pred HHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 215 LKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
.+.++|+.++. ..+...+.+.+..
T Consensus 324 ----------~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 324 ----------GTYLLWVDFSALGLSDEELESILVQ 348 (391)
T ss_dssp ----------BSSEEEEECGGGCCCHHHHHHHHHH
T ss_pred ----------ccEEEEEEhhhcCCCHHHHHHHHHH
Confidence 45566788863 2345667777664
No 68
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.95 E-value=7.3e-27 Score=212.15 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=185.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC---CceEEEEecCCCCcccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG---RTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~ 79 (324)
|+..++.+++++||.|+++.|+|.++...++ ..|.++..++..|+++|++++++. ++++|++++++||+|.+
T Consensus 136 a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~ 210 (427)
T 2w8t_A 136 ANLGIISTLAGKGEYVILDADSHASIYDGCQ-----QGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDI 210 (427)
T ss_dssp HHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-----HSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCc
Confidence 6677788889999999999999999988773 367888888888999999999432 78999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCCc--------c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
.|+++|+++|+++|+++|+||+|+.+.... . ..++|++++|+||++|++ |||+++++++++.+...
T Consensus 211 ~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~----gG~v~~~~~l~~~l~~~ 286 (427)
T 2w8t_A 211 APLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTV----GGFVVSNHPKFEAVRLA 286 (427)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSC----CEEEEECCTTGGGGGGT
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccC----CCEEEeCHHHHHHHHHh
Confidence 999999999999999999999995543221 1 225799999999999865 49999998888877654
Q ss_pred hhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 150 HQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...+ ..+.+..+..++. .+..+..++...+++.++++++.+.|++.+..+..+. +.|
T Consensus 287 ~~~~--~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~ 346 (427)
T 2w8t_A 287 CRPY--IFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTET------------------CDS 346 (427)
T ss_dssp CHHH--HSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTCEESCSS------------------CCS
T ss_pred cccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCcccCCC------------------CCC
Confidence 2211 1122333332222 2322333456777889999999999998876544221 146
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
+++++.+++......+.+.+.. .|+ .+..+. .|.. ....+++|+|++ ...+++++
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~---~Gi-~v~~~~------~~~~--------------~~~~~~lRi~~~-~~~t~e~i 401 (427)
T 2w8t_A 347 AIVAVMLEDQEQAAMMWQALLD---GGL-YVNMAR------PPAT--------------PAGTFLLRCSIC-AEHTPAQI 401 (427)
T ss_dssp SEEEEEESSHHHHHHHHHHHHH---TTE-ECEEEC------TTTS--------------CTTCEEEEEECC-TTCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH---CCe-EEeeeC------CCCC--------------CCCCeEEEEEeC-CCCCHHHH
Confidence 7999999876667788888774 243 111111 1111 112468999999 76666666
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+.+
T Consensus 402 ~~~~~~l~~~ 411 (427)
T 2w8t_A 402 QTVLGMFQAA 411 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 69
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=1.2e-26 Score=209.72 Aligned_cols=255 Identities=15% Similarity=0.066 Sum_probs=177.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CCHHHHHHhhhc---CCce-EEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQ---GRTK-VLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~---~~~~-~v~~~~ 71 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++.+ ++++ ++++++
T Consensus 112 ~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~ 186 (413)
T 3t18_A 112 GAIRSAIFSYLDEGDPLICHDYYWAPYRKICE-----EFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINS 186 (413)
T ss_dssp HHHHHHHHHHCCSSCEEEEESSCCTHHHHHHH-----HHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcccHHHHHH-----HhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 57888999999999999999999999998874 36788888775 279999999833 1666 788899
Q ss_pred C-CCCcccccChHH---HHHHHH------hcCCEEEEcCCCCcCCCCcc------C----CCC---cEEEeCCccccccC
Q 020548 72 I-SNPTLAVANIPE---LSRLAH------DKGVTVVVDNTFSPLVLSPA------R----LGA---DVVVHSISKFISGG 128 (324)
Q Consensus 72 ~-~nptG~~~~~~~---i~~l~~------~~~~~~ivD~~~~~~~~~~~------~----~~~---d~~~~S~sK~~~~~ 128 (324)
| |||||.+.+.++ |+++|+ ++|+++|+||+|.++..... . .+. +++++|+||.++++
T Consensus 187 p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 266 (413)
T 3t18_A 187 PGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAY 266 (413)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCc
Confidence 9 999999987654 555666 89999999999966643211 1 112 38889999999989
Q ss_pred CCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---------cHHHHHHHHHHHHHHHHHHHHh
Q 020548 129 ADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---------HLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 129 g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
|+|+ ||+++ ++++++.+..............++......+...+. ......+++.++++.+.+.|++
T Consensus 267 G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 345 (413)
T 3t18_A 267 GLRS-GAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKE 345 (413)
T ss_dssp GGCC-EEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCc-EEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 99998 899999888765421111112223222222222222 1223445678889999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 276 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 276 (324)
.+..+..|. ++.++|+.+.+ ...+.+.+.. .|+ . +.|+
T Consensus 346 ~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~l~~---~gv-~----------v~~g------ 383 (413)
T 3t18_A 346 NKLTMIPYF-------------------GGFFTFIPTDK---AFDIVKDLEK---ENI-F----------TIPS------ 383 (413)
T ss_dssp TTCCCBCCC-------------------SSSCEEEECSC---HHHHHHHHHH---TTE-E----------CEEC------
T ss_pred cCCCccCCC-------------------ceEEEEeCCCC---HHHHHHHHHh---CCE-E----------EecC------
Confidence 876655443 45667777754 3345555543 232 1 1111
Q ss_pred CCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 277 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 277 ~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++++|+|++ ..+.+++++.|.++++.+.
T Consensus 384 ------------~~~iRis~~-~~~~~~~l~~l~~~l~~~~ 411 (413)
T 3t18_A 384 ------------AKGIRVAIC-GVGEEKIPKLVQRLAFYTN 411 (413)
T ss_dssp ------------SSEEEECTT-TSCGGGHHHHHHHHHHHHH
T ss_pred ------------CCceEEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 378999999 7677777899999988775
No 70
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.95 E-value=7e-27 Score=207.86 Aligned_cols=252 Identities=13% Similarity=0.118 Sum_probs=173.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC------HHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD------HEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.++ +||+|+++.|+|+++...++ ..|.++..++.+. ++++.+.+ ++++++|++++|+||
T Consensus 87 ~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~l~~~~~~~-~~~~~~v~i~~p~np 158 (364)
T 1lc5_A 87 ESIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLREADGWQLTDAILEAL-TPDLDCLFLCTPNNP 158 (364)
T ss_dssp HHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTTCCCTTHHHHC-CTTCCEEEEESSCTT
T ss_pred HHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-----HcCCeEEEEeCCcccccchhHHHHHhc-cCCCCEEEEeCCCCC
Confidence 5778888877 78999999999999988774 2677877776542 35455656 578899999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC---Ccc----CCCCcEEEeCCccccccCCCeeEEEEE-cChhHHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---SPA----RLGADVVVHSISKFISGGADIIAGAVC-GPANLVN 144 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~---~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~ 144 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+.. ... ..+.+++++|+||+++++|.|+ ||++ +++++++
T Consensus 159 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~ 237 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRL-GYLVNSDDAAMA 237 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCC-EEEECCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccce-EEEEECCHHHHH
Confidence 999988 88999999999999999999965542 112 2368899999999999889997 9999 9999998
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+...... +..+.+.+..+..++....+++...+++.++++++.+.|++. +..+. |.
T Consensus 238 ~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~------------------ 295 (364)
T 1lc5_A 238 RMRRQQMP---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PG------------------ 295 (364)
T ss_dssp HHHHHSCT---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CC------------------
T ss_pred HHHHhCCC---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CC------------------
Confidence 88776541 222223233333333332335566667788999999999987 33443 33
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.|+++++.++.. ...+.+.+.. .|+ .+ .|+..+. +..++++|+|++ . .
T Consensus 296 -~g~~~~~~~~~~--~~~l~~~l~~---~gi-~v----------~~g~~~~-----------~~~~~~iRis~~-~---~ 343 (364)
T 1lc5_A 296 -RANYLLLRCERE--DIDLQRRLLT---QRI-LI----------RSCANYP-----------GLDSRYYRVAIR-S---A 343 (364)
T ss_dssp -SSSEEEEEESCT--TCCHHHHHHT---TTE-EC----------EECTTST-----------TCCTTEEEEECC-C---H
T ss_pred -CCeEEEEECCCc--HHHHHHHHHH---CCc-EE----------eeCcccC-----------CCCCCEEEEEeC-C---H
Confidence 466888988641 3345555553 233 21 2211110 123579999999 3 3
Q ss_pred HHHHHHHHHHHhh
Q 020548 304 QRWSQFEKALSRM 316 (324)
Q Consensus 304 ~~~~~l~~~l~~~ 316 (324)
++++.+.++|+.+
T Consensus 344 ~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 344 AQNERLLAALRNV 356 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555554
No 71
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=1.9e-26 Score=208.29 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=188.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||.|+++.|.|+++...+. ..|.++..++..|++++++++.+.++++|++++|+||||.+.+
T Consensus 130 ~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~ 204 (409)
T 3kki_A 130 NANVGLLQTICQPNTNVYIDFFAHMSLWEGAR-----YANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP 204 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTSCHHHHHHHH-----HTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCHHHHHHHH-----HcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC
Confidence 46777888899999999999999999988773 3688888888889999999994456899999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLSP--------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+++|+++|+++|+++|+||+|+.....+ .. .++|+++.|+||+++++ +||+++++++++.+.....
T Consensus 205 l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~~~~~~~~~~ 280 (409)
T 3kki_A 205 LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEVNRCVPFISY 280 (409)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSGGGTHHHHCH
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHHHHHHHHhCc
Confidence 9999999999999999999995522110 11 15789999999999876 4999999988887776443
Q ss_pred hhhhccCCCCCHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.. ..+....+..++.+...++. .+...+++.++++++.+.|++.+..+. . .+++
T Consensus 281 ~~--~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~-------------------~~~~ 337 (409)
T 3kki_A 281 PA--IFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIR--S-------------------ESQI 337 (409)
T ss_dssp HH--HHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTCCCC--C-------------------SSSE
T ss_pred Cc--cccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCccC--C-------------------CCCE
Confidence 22 22223444333322222222 245566778999999999998865432 1 4678
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++.......+.+.+.. .|+.. . ....|.. +...+++|++++ ...++++++.
T Consensus 338 ~~~~~~~~~~~~~~~~~L~~---~Gv~v-~------~~~~~~~--------------~~~~~~iRi~~~-~~~t~e~i~~ 392 (409)
T 3kki_A 338 IGLETGDERNTEKVRDYLES---NGVFG-S------VFCRPAT--------------SKNKNIIRLSLN-SDVNDEQIAK 392 (409)
T ss_dssp EEEEEESHHHHHHHHHHHHH---TTEEC-E------EECTTSS--------------CTTCEEEEEECC-TTCCHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCceE-e------eeCCCCc--------------CCCCcEEEEEcc-CCCCHHHHHH
Confidence 99999866667778777764 24321 1 1111111 123579999999 7777777777
Q ss_pred HHHHHHhhhhc
Q 020548 309 FEKALSRMQDS 319 (324)
Q Consensus 309 l~~~l~~~~~~ 319 (324)
+.++|+++-+.
T Consensus 393 ~~~~l~~~l~~ 403 (409)
T 3kki_A 393 IIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777665433
No 72
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.95 E-value=1.6e-27 Score=212.87 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=155.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ +++++++++++|+||||.
T Consensus 92 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~ 165 (377)
T 3fdb_A 92 RGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-----ATQREGIFIDATGGINLHDVEKGF-QAGARSILLCNPYNPLGM 165 (377)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-----HHTCCEEEEECTTSCCHHHHHHHH-HTTCCEEEEESSBTTTTB
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEccCCCCCCHHHHHHHh-ccCCCEEEEeCCCCCCCC
Confidence 57888899999999999999999999988774 267888888776 899999999 777999999999999999
Q ss_pred ccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----cC------CCCcEEEeCCccccccCCCeeEEEEEc-ChhHHH
Q 020548 79 VAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----AR------LGADVVVHSISKFISGGADIIAGAVCG-PANLVN 144 (324)
Q Consensus 79 ~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~~------~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~ 144 (324)
+.+ +++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||.+|++|.|+ ||++. ++++.+
T Consensus 166 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~ 244 (377)
T 3fdb_A 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKC-AQIIFSNPSDAE 244 (377)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCC-EEEECCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhh-eEEEeCCHHHHH
Confidence 975 6677888999999999999996654322 11 135599999999999899997 98765 788888
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC--CCceeCCCCCCCchhHHHHHHhcc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.+..... ......+.+.+.++...+.. ..+++...+++.++++++.+.|++. +..+..|.
T Consensus 245 ~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 307 (377)
T 3fdb_A 245 HWQQLSP-VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ---------------- 307 (377)
T ss_dssp HHHHSCH-HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS----------------
T ss_pred HHHHHHH-hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----------------
Confidence 8877554 11122233333333333332 2335666777899999999999984 45554333
Q ss_pred CCCcceEEEEEeCC
Q 020548 222 EYGFGGLLCLDMET 235 (324)
Q Consensus 222 ~~~~g~~~~~~l~~ 235 (324)
.+.++++.++.
T Consensus 308 ---~~~~~~~~~~~ 318 (377)
T 3fdb_A 308 ---ATYLMWIDFRD 318 (377)
T ss_dssp ---BCSEEEEECTT
T ss_pred ---eeEEEEEECcc
Confidence 45566888873
No 73
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1.2e-26 Score=209.58 Aligned_cols=217 Identities=20% Similarity=0.268 Sum_probs=161.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC------HHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD------HEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.++ +++|++++ ++++++|++++|+||
T Consensus 113 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~l~~~l-~~~~~~v~~~~p~np 186 (409)
T 2gb3_A 113 EAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLIPVTRRMEEGFAIPQNLESFI-NERTKGIVLSNPCNP 186 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEEEEECCGGGTSCCCTTGGGGC-CTTEEEEEEESSCTT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeccCCCCCCccHHHHHHhh-CcCCeEEEECCCCCC
Confidence 57888888889999999999999999988773 3677887777642 67888888 678999999999999
Q ss_pred ccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC----c-c-C-CCCcEEEeCCccccccCCCeeEEEEEcCh-hHHH
Q 020548 76 TLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS----P-A-R-LGADVVVHSISKFISGGADIIAGAVCGPA-NLVN 144 (324)
Q Consensus 76 tG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~-~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~ 144 (324)
||.+. ++++|+++|+++|+++|+|++|+.+... + . . .++|++++|+||+++++|.|+ ||++.++ ++++
T Consensus 187 tG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~ 265 (409)
T 2gb3_A 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARV-GCLITRNEELIS 265 (409)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceE-EEEEECcHHHHH
Confidence 99996 4889999999999999999999655321 1 2 1 267999999999998889997 9999988 8988
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+....... ...+.+.+..+..++.. ...++...+++.++++.+.+.|++.+..+ ..|.
T Consensus 266 ~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------- 326 (409)
T 2gb3_A 266 HAMKLAQGR--LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS----------------- 326 (409)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS-----------------
T ss_pred HHHHHHhcc--CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCC-----------------
Confidence 887765521 12222333333334432 22355566777899999999999886554 3333
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++++.+++ .+...+.+.+.
T Consensus 327 --~~~~~~~~~~~-~~~~~l~~~l~ 348 (409)
T 2gb3_A 327 --GAFYITAELPV-EDAEEFARWML 348 (409)
T ss_dssp --BSSEEEEECSS-SCHHHHHHHHH
T ss_pred --eeEEEEEEeCC-CCHHHHHHHHH
Confidence 46677888862 23455666655
No 74
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.95 E-value=5.5e-27 Score=209.32 Aligned_cols=256 Identities=12% Similarity=0.083 Sum_probs=176.8
Q ss_pred chHHHHHHHccCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHH----HHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE----MVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~----~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++ ||+|+++.|+|+++...++ ..|.++.+++.++-+ ++++++ .+++++|++++|+||
T Consensus 93 ~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~p~np 166 (376)
T 3ezs_A 93 EVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-----FIKAKSLLMPLTKENDFTPSLNEKE-LQEVDLVILNSPNNP 166 (376)
T ss_dssp HHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTSCCCCCHHH-HHHCSEEEECSSCTT
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-----HcCCEEEEcccCCCCCcchhHHhhh-ccCCCEEEEcCCCCC
Confidence 5788889999999 9999999999999988774 368888888764221 566666 567899999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc---------CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA---------RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~---------~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+... .. ..+.++++.|+||++|++|.|+ ||+++
T Consensus 167 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~ 245 (376)
T 3ezs_A 167 TGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRS-GFIAG 245 (376)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCC-EEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcccee-EEEee
Confidence 999986 667788899999999999999665431 11 3578899999999999889997 99999
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++++.+...... .....+.+.+.++...+.....++...+++.++++.+.+.|+ +.. .|.
T Consensus 246 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~------------- 307 (376)
T 3ezs_A 246 DSRLLEKYKAFRAY-LGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK--NTL--IYP------------- 307 (376)
T ss_dssp CHHHHHHHHHHHTT-TCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST--TCC--CCS-------------
T ss_pred CHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc--CCC--CCC-------------
Confidence 99999998876551 112222233333333444444466667777888899988887 332 233
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
.|.++++.+++ ...+.+.+.. +.|+ .+..|.... . .+..++++|+|++
T Consensus 308 ------~~~~~~~~~~~---~~~~~~~l~~--~~gi-~v~~g~~~~------~-------------~~~~~~~iRis~~- 355 (376)
T 3ezs_A 308 ------YSFYVYLPVQN---GENFAKTLYQ--NEGI-ITLPALYLG------R-------------NRIGADYVRLALV- 355 (376)
T ss_dssp ------BSSEEEEECSC---HHHHHHHHHH--HHCC-BCEEGGGGC------S-------------TTTTTTEEEEECC-
T ss_pred ------cceEEEEECCC---HHHHHHHHHH--hCCE-EEeCcHHhC------C-------------CCCCCCeEEEEEc-
Confidence 67789999973 3445555442 1232 222222110 0 0123589999998
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
. +++.++.+.++|+.+
T Consensus 356 ~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 356 Y--DTPLLEKPLEIIETY 371 (376)
T ss_dssp S--CHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHH
Confidence 5 444455555555443
No 75
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.95 E-value=3.8e-27 Score=214.19 Aligned_cols=219 Identities=11% Similarity=0.074 Sum_probs=160.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcc-cceeEEEecC------CCHHHHHHhhhcC---CceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA-CNITTTFVDI------SDHEMVNSAIVQG---RTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~-~g~~~~~~~~------~d~~~l~~~l~~~---~~~~v~~~~ 71 (324)
+|+..++++++++||+|+++.|+|+++...+ +. .|.++..++. .|++++++++ ++ +++++++++
T Consensus 124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~-----~~~~g~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~ 197 (430)
T 2x5f_A 124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVF-----NTRNGANLQTYPIFDKDGHYTTDSLVEAL-QSYNKDKVIMILNY 197 (430)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHH-----TTTTCCEEEEECCBCTTSCBCSHHHHHHH-HHCCSSEEEEEECS
T ss_pred HHHHHHHHHHhCCCCEEEEcCCcCccHHHHH-----HHhcCCeEEEEeccCccCCcCHHHHHHHH-HhcCCCCEEEEEcC
Confidence 5788899999999999999999999998877 33 5777777764 2789999998 44 789999999
Q ss_pred CCCCcccccC---hHHHHHHHHh-----cCCEEEEcCCCCcCCCC-----cc-----C-CCC---cEEEeCCccccccCC
Q 020548 72 ISNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPLVLS-----PA-----R-LGA---DVVVHSISKFISGGA 129 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~-----~~~~~ivD~~~~~~~~~-----~~-----~-~~~---d~~~~S~sK~~~~~g 129 (324)
|+||||.+.+ +++|+++|++ +|+++|+||+|+.+... +. . .+. +++++|+||+++++|
T Consensus 198 p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 277 (430)
T 2x5f_A 198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG 277 (430)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC
Confidence 9999999987 8899999999 99999999999665321 21 1 356 789999999999889
Q ss_pred CeeEEEEEc---ChhHHHHHHHhhhhh---hhccCCCCCHHHHHHHhc-CcccHHH---HHHHHHHHHHHHHHHHH----
Q 020548 130 DIIAGAVCG---PANLVNSMMDLHQGA---LMLLGPTMNPKVAFELSE-RIPHLGL---RMKEHCHRALIFARRMK---- 195 (324)
Q Consensus 130 ~r~~G~i~~---~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~l~~~L~---- 195 (324)
.|+ ||++. ++++++.+....... .....+.+.+.++..++. ...+.+. ..+++.++++.+.+.|+
T Consensus 278 ~ri-G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 356 (430)
T 2x5f_A 278 FRV-GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQY 356 (430)
T ss_dssp GCC-EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred CCe-EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 997 99999 999988887655410 112223333333333443 3223333 66667889999999998
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+.+..+..|. .|.++++.++ ..+...+.+.+.
T Consensus 357 ~~g~~~~~~~-------------------~g~~~~~~~~-~~~~~~~~~~l~ 388 (430)
T 2x5f_A 357 HSHWQAYDFN-------------------SGYFMAIKVH-DVDPEALRKHLI 388 (430)
T ss_dssp TTTEEECCCC-------------------BSSEEEEEES-SSCHHHHHHHHH
T ss_pred CCCceeeCCC-------------------ceEEEEeCCC-CCCHHHHHHHHH
Confidence 4444443332 4567899997 223455666654
No 76
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.95 E-value=1.2e-26 Score=210.68 Aligned_cols=219 Identities=13% Similarity=0.040 Sum_probs=158.4
Q ss_pred chH--HHHHHHccC--C----------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCC
Q 020548 2 SAI--SSVLMQLCS--S----------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai--~~~~~~~~~--~----------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~ 63 (324)
+|+ ..+++++++ | ||+|++++|+|+++...++ ..|.++..++.+ |++++++++++++
T Consensus 106 ~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~ 180 (427)
T 3ppl_A 106 LNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITE-----RFGFEMISVPMNEDGPDMDAVEELVKNPQ 180 (427)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----HTTCEEEEEEEETTEECHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHH-----HcCCEEEEeCCCCCCCCHHHHHHHHhcCC
Confidence 356 467777776 6 9999999999999998884 367777777653 8999999994478
Q ss_pred ceEEEEe-cCCCCcccccChH---HHHHHH-HhcCCEEEEcCCCCcCCCC--c------c-------CCCCcEEEeCCcc
Q 020548 64 TKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPLVLS--P------A-------RLGADVVVHSISK 123 (324)
Q Consensus 64 ~~~v~~~-~~~nptG~~~~~~---~i~~l~-~~~~~~~ivD~~~~~~~~~--~------~-------~~~~d~~~~S~sK 123 (324)
+++|+++ ++|||||.+.+.+ +|+++| +++|+++|+||+|+.+.+. + . ..+.+++++|+||
T Consensus 181 ~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 260 (427)
T 3ppl_A 181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK 260 (427)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTT
T ss_pred CeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhh
Confidence 9999876 7999999998866 888888 9999999999999664221 1 1 2367899999999
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhC--
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKL-- 197 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~-- 197 (324)
+ +++|.|+ ||+++++++++.+..... ......+.+.+..+..++.... .+....+.+.++++.+.+.|++.
T Consensus 261 ~-~~~G~r~-G~~~~~~~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~ 337 (427)
T 3ppl_A 261 I-TLAGAGV-SFFLTSAENRKWYTGHAG-IRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLA 337 (427)
T ss_dssp T-SCTTSSC-EEEECCHHHHHHHHHHHH-HHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred c-cCcCccE-EEEEcCHHHHHHHHHHhh-cccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 6789997 999999999998887665 1123334444445444554422 23344555677778888877652
Q ss_pred ---CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 198 ---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 198 ---~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+..+..|. +|.++|+.++.. +...+.+.+..
T Consensus 338 ~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~~ 371 (427)
T 3ppl_A 338 EYGVAQWTVPA-------------------GGYFISLDVVPG-TASRVAELAKE 371 (427)
T ss_dssp GGTCCEECCCS-------------------BSSCEEEECSTT-CHHHHHHHHHH
T ss_pred CCCceEEeCCC-------------------ccEEEEEECCcc-hHHHHHHHHHH
Confidence 23444444 588999999743 35556666653
No 77
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=5.5e-27 Score=212.61 Aligned_cols=221 Identities=17% Similarity=0.140 Sum_probs=161.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++.+ |++++++++.++++++|++++|+
T Consensus 130 ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~ 204 (421)
T 3l8a_A 130 PAISIALQAFSEKGDAVLINSPVYYPFARTIR-----LNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPH 204 (421)
T ss_dssp HHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-----HTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSB
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCC
Confidence 47889999999999999999999999988774 257777776642 89999999943899999999999
Q ss_pred CCcccc---cChHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cC-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS-----P-AR-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||+|.+ .++++|+++|+++|+++|+||+|+++... + .. .+.++++.|+||+++++|.++ |+++.+
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~ 283 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQ 283 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcC
Confidence 999998 46889999999999999999999665421 1 11 145699999999999889997 999887
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHH
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~ 216 (324)
+++.+.+...........++.+.+.++..++. ...+++...+++.++++++.+.|++. +..+..|.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~----------- 352 (421)
T 3l8a_A 284 NESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE----------- 352 (421)
T ss_dssp SHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS-----------
T ss_pred CHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC-----------
Confidence 88888887765421111222222233333333 22335666677889999999999986 44555443
Q ss_pred HHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 217 SMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
++.+.|+.++. ..+...+.+.+.
T Consensus 353 --------~~~~~~v~~~~~~~~~~~l~~~l~ 376 (421)
T 3l8a_A 353 --------GTYLVWLDFSAYAIAQPQLSEKLQ 376 (421)
T ss_dssp --------BSSEEEEECGGGTCCTTHHHHHHH
T ss_pred --------eeEEEEEeccccCCCHHHHHHHHH
Confidence 45566788863 123445666553
No 78
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=2.7e-26 Score=205.87 Aligned_cols=220 Identities=18% Similarity=0.143 Sum_probs=155.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++.+.++++|++++|+
T Consensus 98 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~ 172 (390)
T 1d2f_A 98 YMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-----GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ 172 (390)
T ss_dssp HHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-----HCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCC
Confidence 57888999999999999999999999988874 25777766654 489999999933489999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCC--C-cEEEeCCccccccCCCeeEEEEEcC-h
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLG--A-DVVVHSISKFISGGADIIAGAVCGP-A 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~--~-d~~~~S~sK~~~~~g~r~~G~i~~~-~ 140 (324)
||||.+.+ +++|+++|+++|+++|+||+|+.+... ...++ . |. +.|+||+++++|.|+ ||++.+ +
T Consensus 173 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~ 250 (390)
T 1d2f_A 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG-AYGIIENS 250 (390)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC-EEEEECSH
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhh-eEEEECCH
Confidence 99999976 789999999999999999999665321 11222 2 67 999999998889997 999874 7
Q ss_pred hHHHHHHHhhhhhhhccCCC-CCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPT-MNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~~ 216 (324)
++.+.+.....+....++.+ +.+.++..++.. ...++...+++.++++.+.+.|++ . +..+..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------- 319 (390)
T 1d2f_A 251 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ----------- 319 (390)
T ss_dssp HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS-----------
T ss_pred HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCC-----------
Confidence 88887766543000111222 222222223322 223555666778899999999988 5 33433222
Q ss_pred HHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 217 SMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
++.++++.++.. .+...+.+.+.
T Consensus 320 --------~~~~~~~~~~~~~~~~~~l~~~l~ 343 (390)
T 1d2f_A 320 --------STYLAWLDLRPLNIDDNALQKALI 343 (390)
T ss_dssp --------BCSEEEEECGGGCCCHHHHHHHHH
T ss_pred --------ccEEEEEEccccCCCHHHHHHHHH
Confidence 355668888632 23456666665
No 79
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.95 E-value=2.5e-26 Score=203.92 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=175.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.++ |+|+++.|+|+++...++ ..|.++..++.+ +++++++++ ++ +++|++++|+|||
T Consensus 89 ~al~~~~~~~----d~vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~v~i~~p~npt 157 (361)
T 3ftb_A 89 EIIELSISLF----EKILIIVPSYAEYEINAK-----KHGVSVVFSYLDENMCIDYEDIISKI-DD-VDSVIIGNPNNPN 157 (361)
T ss_dssp HHHHHHHTTC----SEEEEEESCCTHHHHHHH-----HTTCEEEEEECCTTSCCCHHHHHHHT-TT-CSEEEEETTBTTT
T ss_pred HHHHHHHHHc----CcEEEecCChHHHHHHHH-----HcCCeEEEeecCcccCCCHHHHHHhc-cC-CCEEEEeCCCCCC
Confidence 4666666665 999999999999988874 368888887753 679999999 66 9999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----cc----CCCCcEEEeCCccccccCCCeeEEEEE-cChhHHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----PA----RLGADVVVHSISKFISGGADIIAGAVC-GPANLVN 144 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~ 144 (324)
|.+.+ +++|+++|+++|+++|+|++|+++... +. ..+.+++++|+||.++++|.|+ ||++ .++++.+
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-g~~~~~~~~~~~ 236 (361)
T 3ftb_A 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRF-GYGITNNKEIAA 236 (361)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCC-EEEEESCHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcce-eEEEeCCHHHHH
Confidence 99985 667888888999999999999655431 11 1256699999999999889997 9987 8999999
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCCchhHHHHHHhccC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+...... +..+.+.+..+..++....+++...+++.++++++.+.|++.+. . +. +.
T Consensus 237 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~----------------- 295 (361)
T 3ftb_A 237 KIKAKQNP---WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SP----------------- 295 (361)
T ss_dssp HHHTTSCT---TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CC-----------------
T ss_pred HHHhhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CC-----------------
Confidence 88766541 22222222233333333333556667789999999999999854 4 43 33
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|+++++.++. .+...+.+.+.. .|+ .++.| ..+. +..++++|+|++ .
T Consensus 296 --~~~~~~~~~~~-~~~~~l~~~l~~---~gi-~v~~g----------~~~~-----------~~~~~~iRis~~-~--- 343 (361)
T 3ftb_A 296 --HANFVLCRLEN-ISGEKLYDSLLK---EDI-VIRRC----------CNFI-----------GLDDSFVRFAIK-D--- 343 (361)
T ss_dssp --SSSEEEEEESS-SCHHHHHHHHHT---TTE-ECEEC----------TTST-----------TCCTTEEEEECC-C---
T ss_pred --CCeEEEEEcCC-CCHHHHHHHHHH---CCe-EEeeC----------ccCC-----------CCCCCEEEEEcC-C---
Confidence 46788999875 335567777664 233 22222 1110 223589999999 3
Q ss_pred HHHHHHHHHHHHhhh
Q 020548 303 DQRWSQFEKALSRMQ 317 (324)
Q Consensus 303 ~~~~~~l~~~l~~~~ 317 (324)
.+.++.+.++++.+.
T Consensus 344 ~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 344 EKKNTKFLRALKGVE 358 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333455666665553
No 80
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.95 E-value=1.5e-26 Score=209.28 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=155.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 115 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~n 188 (416)
T 1bw0_A 115 HGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIGMHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSN 188 (416)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-----HcCcEEEEeecCcccCCCCCHHHHHHHh-ccCCeEEEEeCCCC
Confidence 57888899999999999999999999988774 26777766653 2799999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----------cCC---CCcEEEeCCccccccCCCeeEEEEEc
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARL---GADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+.... ..+ +.+++++|+||+|+++|.|+ ||+++
T Consensus 189 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~-G~~~~ 267 (416)
T 1bw0_A 189 PCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLY 267 (416)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEE
T ss_pred CCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceE-EEEEe
Confidence 9999998 8999999999999999999996553211 111 24688999999999999997 99987
Q ss_pred Ch--hHHHHHHHhh-h-hhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 139 PA--NLVNSMMDLH-Q-GALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 139 ~~--~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
++ ++++.+.... . .......+.+.+.++..++.. ...++...+++.++++.+.+.|++. +..+..|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------ 341 (416)
T 1bw0_A 268 VDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR------ 341 (416)
T ss_dssp ECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC------
T ss_pred eCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC------
Confidence 65 3444443211 1 001122233333333334432 2335566777889999999999887 33443333
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHh
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 246 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l 246 (324)
.|.++++.++.. .+...+.+.+
T Consensus 342 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (416)
T 1bw0_A 342 -------------GAMYLMSRIDLEKYRDIKTDVEFFEKL 368 (416)
T ss_dssp -------------BTTEEEEEECGGGBSSCCSHHHHHHHH
T ss_pred -------------eeEEEEEeCCHHHcCCCCCHHHHHHHH
Confidence 467888888521 2345566654
No 81
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.95 E-value=1.4e-26 Score=207.88 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=180.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|++ +...++ ..|.++..++. .|++++++++ ++ ++++|++++|+
T Consensus 96 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~ 169 (393)
T 1vjo_A 96 AAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG-----RYGADVRTISKPWGEVFSLEELRTAL-ETHRPAILALVHAE 169 (393)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEE
T ss_pred HHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH-----HcCCceEEEecCCCCCCCHHHHHHHH-hhCCceEEEEeccC
Confidence 57888888889999999999999998 666553 26788877774 4899999999 66 89999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh-
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH- 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~- 150 (324)
||||.+.|+++|.++|+++|+++|+|++|+ + ...+....++|++++|+||++++++ ++ |+++.++++++.+....
T Consensus 170 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~-~~-G~l~~~~~~~~~~~~~~~ 247 (393)
T 1vjo_A 170 TSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSP-GA-SPFTMSSRAIEKLQRRRT 247 (393)
T ss_dssp TTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCS-SC-EEEEECHHHHHHHHTCSS
T ss_pred CCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCC-ce-EEEEECHHHHHHHhccCC
Confidence 999999999999999999999999999995 1 1122223478999999999998876 86 99999999888774320
Q ss_pred ---hh------------hhhccCCCCCHHH---HHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 151 ---QG------------ALMLLGPTMNPKV---AFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 151 ---~~------------~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
.. ......++++... +..++... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----- 322 (393)
T 1vjo_A 248 KVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK----- 322 (393)
T ss_dssp CCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG-----
T ss_pred CCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCc-----
Confidence 00 0011111333322 22223221 12456677789999999999998866554332
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
. ...+.++++.++...+...+.+.+.. ++|+ .+..|. .. ..++
T Consensus 323 ----------~-~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi-~v~~g~----------~~-------------~~~~ 365 (393)
T 1vjo_A 323 ----------E-YRLPTLTTVCIPDGVDGKAVARRLLN--EHNI-EVGGGL----------GE-------------LAGK 365 (393)
T ss_dssp ----------G-GBCSSEEEEECCTTCCHHHHHHHHHH--HHCE-ECEECC----------GG-------------GTTT
T ss_pred ----------c-ccCCcEEEEEcCCCCCHHHHHHHHHh--hCCE-EEecCc----------cc-------------cCCC
Confidence 0 01346888888633345567666653 1233 222221 10 0247
Q ss_pred eEEEE-eccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMS-VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s-~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++|+| ++ ..+.++.++.+.++|+.+
T Consensus 366 ~iRis~~~-~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 366 VWRVGLMG-FNSRKESVDQLIPALEQV 391 (393)
T ss_dssp EEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred EEEEeCCc-cCChHHHHHHHHHHHHHH
Confidence 89999 46 555555566666666543
No 82
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.95 E-value=3.9e-27 Score=209.76 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=184.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec--CC-----CHHHHHHhhhc----CCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD--IS-----DHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~--~~-----d~~~l~~~l~~----~~~~~v~~~ 70 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++ .+ |++++++++.+ +++++|+++
T Consensus 80 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 80 EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-----HcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 57888899889999999999999999988763 3788888888 54 89999999932 689999999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH-HH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-MM 147 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~-l~ 147 (324)
+|+||||.+.|+++|.++|+++|+++|+|++|+.... +....++|++++|+||+++++ .++ ||++.++++++. +.
T Consensus 155 ~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~-~~~-G~~~~~~~~~~~~~~ 232 (371)
T 2e7j_A 155 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS-GPI-GVMGMKEEWAEIVLR 232 (371)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCC-SSC-EEEEECTTTTTTTTC
T ss_pred CCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCC-CCc-EEEEEechhhhhhcc
Confidence 9999999999999999999999999999999954432 233347899999999999875 486 999999887776 64
Q ss_pred Hhhhhhhhc---cCCCCCHHHHHHHhcCcccHH-HHHHHH--HHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 148 DLHQGALML---LGPTMNPKVAFELSERIPHLG-LRMKEH--CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 148 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
....+.... ..+++.....+.+...++.+. ...++. .++++++.+.|++.+.++..|..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--------------- 297 (371)
T 2e7j_A 233 RSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNP--------------- 297 (371)
T ss_dssp BCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSS---------------
T ss_pred ccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC---------------
Confidence 433211110 022222222211111222222 344556 78899999999988666554420
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc---CCCCCeEE-EEec
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA---GISAGLVR-MSVG 297 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iR-~s~g 297 (324)
+.++++++.++ +...+.+.+.. .|+.. .| . .... |.+++++| +|++
T Consensus 298 --~~~~~~~~~~~---~~~~~~~~l~~---~gi~~-----------~~-~----------~~~~~~~g~~~~~iRii~~~ 347 (371)
T 2e7j_A 298 --HNHDLMFFHAE---VLYEISKKAKG---GRFFL-----------YR-E----------LKSRKIHGIKPGLTRYFKLS 347 (371)
T ss_dssp --CCSSEEEEECH---HHHHHHHHSSS---GGGHH-----------HH-H----------HHHTTEECSCTTCCSEEEEE
T ss_pred --ccCceEEEECC---CHHHHHHHHHH---CCEEE-----------Ee-c----------cccccccCCCCCceEEEEee
Confidence 13668999985 46677777763 34311 11 0 0011 33368899 9999
Q ss_pred cCC-CHHHHHHHHHHHHHhhh
Q 020548 298 YLG-TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 298 ~~~-~~~~~~~~l~~~l~~~~ 317 (324)
.. .++++++.+.++|+++-
T Consensus 348 -~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 348 -TYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp -CTTCCHHHHHHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHHHHHH
Confidence 76 67777777777776653
No 83
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=8.2e-26 Score=204.64 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=152.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc---CCce-EEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ---GRTK-VLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~---~~~~-~v~~~~ 71 (324)
+|+..+++++++|||+|+++.|+|+++...++ ..|.++..++.. |++++++++.+ ++++ ++++++
T Consensus 113 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~ 187 (418)
T 3rq1_A 113 GGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-----DTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNT 187 (418)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeC
Confidence 57888999999999999999999999988774 368888887752 79999999833 1555 888899
Q ss_pred C-CCCcccccChH---HHHHHHH------hcCCEEEEcCCCCcCCCCc------cC----CCC---cEEEeCCccccccC
Q 020548 72 I-SNPTLAVANIP---ELSRLAH------DKGVTVVVDNTFSPLVLSP------AR----LGA---DVVVHSISKFISGG 128 (324)
Q Consensus 72 ~-~nptG~~~~~~---~i~~l~~------~~~~~~ivD~~~~~~~~~~------~~----~~~---d~~~~S~sK~~~~~ 128 (324)
| +||||.+.+.+ +|+++|+ ++|+++|+||+|.++.... .. ... .++++|+||.++++
T Consensus 188 p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 267 (418)
T 3rq1_A 188 PGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMY 267 (418)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCc
Confidence 9 99999998755 5555666 8999999999996665321 11 122 38889999999999
Q ss_pred CCeeEEEEEc---ChhHHHHHHHhhhhhhhcc---CCCCCHHHHHHHhcCcc----c---HHHHHHHHHHHHHHHHHHHH
Q 020548 129 ADIIAGAVCG---PANLVNSMMDLHQGALMLL---GPTMNPKVAFELSERIP----H---LGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 129 g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~L~ 195 (324)
|+|+ ||+++ ++++++.+........... .+.+.+.++..++.... + .....+++.++++.+.+.|+
T Consensus 268 G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 346 (418)
T 3rq1_A 268 GQRV-GAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAA 346 (418)
T ss_dssp SSCC-EEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-eEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 99988 8999998887654211111 12222223333333321 1 12334567888899999999
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+.+.++..|. .|.++++.+.+ ..++.+.+.
T Consensus 347 ~~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~l~ 376 (418)
T 3rq1_A 347 QVGLPMLPYR-------------------GGFFITIPTDS---ANAICEELK 376 (418)
T ss_dssp HHTCCCCCCC-------------------SSSEEEEECTT---HHHHHHHHH
T ss_pred hcCCCCCCCC-------------------ceEEEEcCCCC---HHHHHHHHH
Confidence 8876554333 46677777754 344555554
No 84
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.95 E-value=5.4e-27 Score=214.37 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=151.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee----------EEEecCCCHHHHHHhhhc-CCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT----------TTFVDISDHEMVNSAIVQ-GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~----------~~~~~~~d~~~l~~~l~~-~~~~~v~~~ 70 (324)
+++..+ .+++++||+|++++|+|+++...++. .|.+ +..++.++.+.+...+.+ +++++|+++
T Consensus 143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~-----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 216 (449)
T 3qgu_A 143 CDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVM-----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFC 216 (449)
T ss_dssp HHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHH-----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEE
T ss_pred HHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHH-----cCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEe
Confidence 466766 77889999999999999999988842 4555 666665432222222212 578999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||++|++|.|+ ||++
T Consensus 217 ~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~ 295 (449)
T 3qgu_A 217 SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRL-GWTV 295 (449)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCC-EEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcccee-EEEe
Confidence 99999999975 7788889999999999999996654321 11 146799999999999899997 9999
Q ss_pred cChhHHH--------HHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 138 GPANLVN--------SMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 138 ~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
+++++++ .+..... .....++.+.+.++..++.. ..+++...+++.++++++.+.|++.+..+..|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 372 (449)
T 3qgu_A 296 VPKALKYANGEPVHADWNRVMT-TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD-- 372 (449)
T ss_dssp CCTTCBCTTSCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS--
T ss_pred cCHHHHhhhhhhHHHHHHHHhh-cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC--
Confidence 9887765 3333332 11112233333333333322 233556677789999999999999887665443
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++|+.++ ..+..++.+.+.
T Consensus 373 -----------------~~~~~~~~~~-~~~~~~~~~~l~ 394 (449)
T 3qgu_A 373 -----------------DAPYIWVGFP-GKPSWDVFAEIL 394 (449)
T ss_dssp -----------------SSSEEEEECT-TSCHHHHHHHHH
T ss_pred -----------------CeeEEEEECC-CCCHHHHHHHHH
Confidence 5778999997 223445555544
No 85
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.94 E-value=1.9e-25 Score=199.66 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=178.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+. ++.+++++||+|++++|+|++.. +...... .|.++..++.+ |++++++++.+.++++|++++++|||
T Consensus 65 ~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 140 (384)
T 3zrp_A 65 SAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKR-YPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETST 140 (384)
T ss_dssp HHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTT-SSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTT
T ss_pred HHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHH-cCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4677 77888999999999999997632 1122223 78888888865 89999999944489999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH--------
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-------- 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l-------- 146 (324)
|.+.|+++|.++|+++|+++|+|++|+.. ..+....++|++++|+||+++++ ..+ |+++.++++++.+
T Consensus 141 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~-~g~-g~~~~~~~~~~~~~~~~~~~~ 218 (384)
T 3zrp_A 141 GVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSA-AGL-GLLLLSPKALSILDSQNSIAG 218 (384)
T ss_dssp TEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCC-SSE-EEEEECHHHHHHHHHCCCSCC
T ss_pred ceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCC-Cce-EEEEECHHHHHHhcCCCCCCc
Confidence 99999999999999999999999998432 22334457999999999998643 234 9999999988777
Q ss_pred -----HHhhhhhhh------ccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 147 -----MDLHQGALM------LLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 147 -----~~~~~~~~~------~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
......... ...+++...... ..+... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----- 293 (384)
T 3zrp_A 219 YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARR----- 293 (384)
T ss_dssp STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSS-----
T ss_pred ccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCc-----
Confidence 222221100 001122322211 122211 12556677788999999999999866544332
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.....+.++++.+++ .+...+.+.+.. .|+ .+..|.. .. .+
T Consensus 294 ----------~~~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~----------------------~~--~~ 334 (384)
T 3zrp_A 294 ----------PESYSNTVTGVILKV-ADPQKVLAGTVN---EGV-EFAPGVH----------------------PA--FK 334 (384)
T ss_dssp ----------GGGBCSSEEEEECSS-SCHHHHHHHHHT---TTC-CCEECCC----------------------TT--CC
T ss_pred ----------ccccCccEEEEECCC-CCHHHHHHHHHH---CCE-EEecCCC----------------------CC--cC
Confidence 001246788899875 445677777764 233 2222210 01 17
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++|+|++ ..+++++++.+.++|+++
T Consensus 335 ~iRi~~~-~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 335 YFRIGHM-GWVTPNDAIIAISVIERT 359 (384)
T ss_dssp EEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecc-ccCCHHHHHHHHHHHHHH
Confidence 8999999 766666666666665544
No 86
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.94 E-value=9.5e-26 Score=208.55 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=145.0
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcC-----CceEEE
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQG-----RTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~-----~~~~v~ 68 (324)
+|+..++++++ ++||+|+++.|+|+++...++ ..|.++..++. .|+++|++++++. ++++|+
T Consensus 168 ~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~iv 242 (500)
T 3tcm_A 168 PGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-----LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALV 242 (500)
T ss_dssp HHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-----HTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEE
Confidence 57888899888 899999999999999998884 36777777663 3899999998331 789999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---c--------CC------CCcEEEeCCcccc-cc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A--------RL------GADVVVHSISKFI-SG 127 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~--------~~------~~d~~~~S~sK~~-~~ 127 (324)
+++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+.. . .+ ...++++|+||.| |.
T Consensus 243 l~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 322 (500)
T 3tcm_A 243 VINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGE 322 (500)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCC
T ss_pred EECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCC
Confidence 9999999999976 6677778999999999999996654321 0 11 1248889999999 78
Q ss_pred CCCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHHHHH
Q 020548 128 GADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-----------PHLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 128 ~g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~ 193 (324)
+|.|+ ||++. ++++++.+...... ..+.+.+.+..+..++... .+.....+++.++++.+.+.
T Consensus 323 ~G~R~-G~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 399 (500)
T 3tcm_A 323 CGKRG-GYFEITGFSAPVREQIYKIASV--NLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHA 399 (500)
T ss_dssp GGGCC-EEEEEESCCTTHHHHHHHHHHT--TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccce-EEEEEeCCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99987 88899888776541 1233334444444444421 22344556678899999999
Q ss_pred HHhC-CCceeCCC
Q 020548 194 MKKL-GLKVLYPG 205 (324)
Q Consensus 194 L~~~-~~~~~~p~ 205 (324)
|++. +..+..|.
T Consensus 400 L~~~~g~~~~~~~ 412 (500)
T 3tcm_A 400 FNKLEGITCNEAE 412 (500)
T ss_dssp HHTSTTEECCCCC
T ss_pred HhcCCCcEEecCC
Confidence 9988 44554343
No 87
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.94 E-value=2.4e-26 Score=205.97 Aligned_cols=263 Identities=15% Similarity=0.170 Sum_probs=182.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..+++++ +++||+|+++.|+|+++...+...... .|.++..++.+ |++++++++ ++++++|++++|+
T Consensus 87 ~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~ 164 (390)
T 1elu_A 87 TGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHL-GPKTRLVILSHLL 164 (390)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGGSSSSCHHHHHHTTC-CTTEEEEEEESBC
T ss_pred HHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH-hCcEEEEEcCCCCCCccchHHHHHHhc-CCCceEEEEeccc
Confidence 4788888988 899999999999999987654332223 57888888762 789999999 7789999999999
Q ss_pred CCcccccChHHHHHHHH----hcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAH----DKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~----~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||||.+.|+++|.++|+ ++|+++|+|++|+... .+....++|++++|+||++.+ +.++ |+++.++++++.+.
T Consensus 165 nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~-~~g~-G~~~~~~~~~~~~~ 242 (390)
T 1elu_A 165 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAG-PAGV-GGLYIHGDCLGEIN 242 (390)
T ss_dssp TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCC-CTTC-EEEEECTTTGGGCC
T ss_pred cCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccC-CCce-EEEEECHHhHhhcC
Confidence 99999999999999999 9999999999994221 122234789999999995544 3445 99999988877665
Q ss_pred Hhhhhh------------------hhccCCCCCHHH---HHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 148 DLHQGA------------------LMLLGPTMNPKV---AFELSER---IPHLGLRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 148 ~~~~~~------------------~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
....+. .....+++.... +..++.. ..+++...+++.++++++.+.|++. +.++.
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 322 (390)
T 1elu_A 243 PTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL 322 (390)
T ss_dssp CCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred CccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 421100 011122223221 1122221 2236667788899999999999997 44554
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.|. + +.|+++.+.++...+...+.+.+.. .|+ .+ .++.
T Consensus 323 ~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v----------~~~~----------- 360 (390)
T 1elu_A 323 ATS-A----------------PQAGLVSFTVDSPLGHRAIVQKLEE---QRI-YL----------RTIA----------- 360 (390)
T ss_dssp CSS-C----------------CSSSEEEEEECSSSCHHHHHHHHHH---TTE-EC----------EEET-----------
T ss_pred cCc-c----------------ccccEEEEEcCCCCCHHHHHHHHHH---CCE-EE----------EecC-----------
Confidence 332 0 2567888898632335567676653 333 11 1110
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++++|+|++ ...++++++.+.++|+++
T Consensus 361 -----~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 -----DPDCIRACCH-YITDEEEINHLLARLADF 388 (390)
T ss_dssp -----TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred -----CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence 1478999998 777787778777777654
No 88
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=1.5e-25 Score=202.62 Aligned_cols=223 Identities=13% Similarity=0.145 Sum_probs=158.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|++ +...++ . .|.++..++.+ |++++++++.++++++|++++|+|
T Consensus 73 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 147 (416)
T 3isl_A 73 AGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAE----R-YGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGET 147 (416)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH----h-cCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCC
Confidence 57888888899999999999999997 444442 2 68888888775 899999999436899999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh--
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-- 150 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~-- 150 (324)
|||.+.|+++|.++|+++|+++|+|++|+. ...+....++|++++|+||+++++ ..+ |+++.++++++.+....
T Consensus 148 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~-~g~-g~~~~~~~~~~~~~~~~~~ 225 (416)
T 3isl_A 148 STGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVP-SGM-APITYNERVADVIAARKKV 225 (416)
T ss_dssp TTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCC-SSE-EEEEECHHHHHHHHTC---
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCC-CCe-EEEEECHHHHHHhhccccc
Confidence 999999999999999999999999999832 223344457999999999985443 234 99999999988876421
Q ss_pred ------------------------------h--hhhhccCCCCCHHHHHH---HhcCcc-c-HHHHHHHHHHHHHHHHHH
Q 020548 151 ------------------------------Q--GALMLLGPTMNPKVAFE---LSERIP-H-LGLRMKEHCHRALIFARR 193 (324)
Q Consensus 151 ------------------------------~--~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~ 193 (324)
. .......+++....... .+.... . ++...+++.++++++.+.
T Consensus 226 ~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~ 305 (416)
T 3isl_A 226 ERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAG 305 (416)
T ss_dssp ---------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0 00001122323222221 121111 1 556677789999999999
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
|++.+.++..|.- ...+.++++.++...+...+.+.+.
T Consensus 306 L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~L~ 343 (416)
T 3isl_A 306 IKAMGLRLFGDDS----------------CKMPVVTCVEIPGGIDGESVRDMLL 343 (416)
T ss_dssp HHHTTCCBCSCGG----------------GBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred HHHcCCEeccCcc----------------ccCCcEEEEeCCCCCCHHHHHHHHH
Confidence 9997665543320 0136688999863334566777665
No 89
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.94 E-value=1.1e-25 Score=203.01 Aligned_cols=265 Identities=15% Similarity=0.179 Sum_probs=180.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|++ +...++ . .|.++..++.+ |++++++++.+.++++|++++|+|
T Consensus 75 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 149 (411)
T 3nnk_A 75 AGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR----R-CRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDT 149 (411)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH----H-cCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence 47888899899999999999999987 555552 2 68888888765 899999999334899999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh-
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ- 151 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~- 151 (324)
|||.+.|+++|+++|+++|+++|+|++++. ...+....++|+++.|+||+++++ .++ |+++.++++++.+.....
T Consensus 150 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~-~g~-g~~~~~~~~~~~~~~~~~~ 227 (411)
T 3nnk_A 150 STTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGP-SGT-SPITLSARMEEAIRRRKCV 227 (411)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCC-SSE-EEEEECHHHHHHHHTTCCC
T ss_pred CcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCC-Cce-EEEEECHHHHHHHhhcccc
Confidence 999999999999999999999999999832 223334457999999999985553 244 999999999888875430
Q ss_pred --h-----------------------------hhhccCCCCCHHHHHHH---hcCc-c-cHHHHHHHHHHHHHHHHHHHH
Q 020548 152 --G-----------------------------ALMLLGPTMNPKVAFEL---SERI-P-HLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 152 --~-----------------------------~~~~~~~~~~~~~~~~~---~~~~-~-~~~~~~~~~~~~~~~l~~~L~ 195 (324)
+ .......++.......+ +... . .++...+++.++++++.+.|+
T Consensus 228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (411)
T 3nnk_A 228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQ 307 (411)
T ss_dssp CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011122232222221 1111 1 145667778899999999999
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
+.+.++..|.- ...+.++++.++...+...+.+.+.. +.|+ .+..| ..
T Consensus 308 ~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~--~~gi-~v~~g----------~~--- 355 (411)
T 3nnk_A 308 AMGLETFGDLK----------------HKMNNVLGVVIPQGINGDQARKLMLE--DFGI-EIGTS----------FG--- 355 (411)
T ss_dssp HTTCCBCSCGG----------------GBCSSEEEEECCTTCCHHHHHHHHHH--HHSE-EEEEC----------CG---
T ss_pred HcCCEeCCCcc----------------cccccEEEEECCCCCCHHHHHHHHHH--hcCe-EEeCc----------cC---
Confidence 98765543320 02467889998633335566666543 1233 21111 10
Q ss_pred CCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhh
Q 020548 276 ELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++++|+|+ + ..+++++++.+.++|+++
T Consensus 356 ----------~~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~ 386 (411)
T 3nnk_A 356 ----------PLHGKVWRIGTMG-YNARKDCVMTTLSALEAV 386 (411)
T ss_dssp ----------GGTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEEeCcc-CcCCHHHHHHHHHHHHHH
Confidence 11357999998 7 665566666666655554
No 90
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=208.14 Aligned_cols=196 Identities=17% Similarity=0.157 Sum_probs=144.6
Q ss_pred chHHHHHHHccCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcC----CceE
Q 020548 2 SAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQG----RTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~----~~~~ 66 (324)
+|+..++++++++|| +|+++.|+|+.+...++ ..|.++..++.+ |+++|++++.+. ++++
T Consensus 164 ~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~ 238 (498)
T 3ihj_A 164 DGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS-----ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKV 238 (498)
T ss_dssp HHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHH-----HTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeE
Confidence 578889999999875 99999999999998884 367777777654 899999998332 6899
Q ss_pred EEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----C-------C-------CCcEEEeCCcccc
Q 020548 67 LYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA----R-------L-------GADVVVHSISKFI 125 (324)
Q Consensus 67 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----~-------~-------~~d~~~~S~sK~~ 125 (324)
|++++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+... . + ...++++|+||.|
T Consensus 239 i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 318 (498)
T 3ihj_A 239 LCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGY 318 (498)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSST
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccc
Confidence 999999999999975 66799999999999999999966544311 0 0 1247899999999
Q ss_pred -ccCCCeeEEEEE---cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHH
Q 020548 126 -SGGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-----------PHLGLRMKEHCHRALIF 190 (324)
Q Consensus 126 -~~~g~r~~G~i~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l 190 (324)
|.+|.|+ ||++ .++++++.+...... ..+.+.+.+.++..++... .......+++.++++.+
T Consensus 319 ~G~~G~R~-G~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l 395 (498)
T 3ihj_A 319 MGECGYRG-GYMEVINLHPEIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLT 395 (498)
T ss_dssp TCCSSSCC-EEEEEESCCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccce-EEEEEecCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689996 9997 688999988776541 1233334444444344320 11234456678999999
Q ss_pred HHHHHhC-CCceeCCC
Q 020548 191 ARRMKKL-GLKVLYPG 205 (324)
Q Consensus 191 ~~~L~~~-~~~~~~p~ 205 (324)
.+.|++. +..+..|.
T Consensus 396 ~~~L~~~~g~~~~~p~ 411 (498)
T 3ihj_A 396 EDLFNQVPGIHCNPLQ 411 (498)
T ss_dssp HHHHHTSTTEECCCCC
T ss_pred HHHHhcCCCcEecCCC
Confidence 9999987 44554343
No 91
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.94 E-value=1.2e-25 Score=203.30 Aligned_cols=297 Identities=19% Similarity=0.201 Sum_probs=206.7
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++.++++|||+|+++. |.|..+...+. ..+.. .|.++++++.+ |++++++++ ++++++|++
T Consensus 94 ~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~-~G~~~~~v~~~~~~~~d~e~l~~~l-~~~tk~V~i 171 (431)
T 3ht4_A 94 HAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKE-YNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGI 171 (431)
T ss_dssp HHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGG-GTCEEEECCBCTTSSBCHHHHHHHC-CTTEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHH-cCCEEEEeCCCCCCCcCHHHHHhhc-CCCCeEEEE
Confidence 578888888999999999999 99999887663 22333 68999999874 999999999 789999999
Q ss_pred ec-CCCCcccc---cChHHHHHHHHh--cCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES-ISNPTLAV---ANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~-~~nptG~~---~~~~~i~~l~~~--~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
++ |+||+|.. .++++|+++|++ +|+++++|++|+.+. ..+...++|++++|+||++++.+...|||++++++
T Consensus 172 ~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~ 251 (431)
T 3ht4_A 172 QRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ 251 (431)
T ss_dssp ECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred ECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHH
Confidence 95 77776665 578899999999 999999999996554 46777799999999999988733333699999999
Q ss_pred HHHHHHHhhhh--hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQG--ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+...... .+...++++. .++.+++.+..++.++++..++++++.+.|++++.++ .|. ++.+
T Consensus 252 li~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~-~~~~--------- 318 (431)
T 3ht4_A 252 YVEACAYRLTSPGIGAEAGASLY--SLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNT-SPA-WNAP--------- 318 (431)
T ss_dssp HHHHHHHHHSCTTTTTSCSCCCS--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCE-ESC-TTSC---------
T ss_pred HHHHHHHHhccCCcccccCccHH--HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcCEe-cCC-CCCC---------
Confidence 99998875431 1112222222 1222344555667788889999999999999999876 455 2222
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccc----cccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA----VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
+.+-++.+.+++.+...+|++.++...+.+.+. -.++|+++.+++.+..+-+..+.+......+.+.++=.-
T Consensus 319 ----~~~li~~i~l~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~gy~~~~~~~~~~f~~~~~~e~~~~~~~~~~~~~~~ 394 (431)
T 3ht4_A 319 ----RTDLIQSVQFDDKDRMIAFCQAIQYASPINSHFTPYANYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYV 394 (431)
T ss_dssp ----CSSSCCEEECCCHHHHHHHHHHHHHTSSSSTTSCCCCEECTTSSSEEEEECCCSSSSCTTSCEEEEESCTTTEEEE
T ss_pred ----CccEEEEEEeCCHHHHHHHHHHHHhcCccccccCCCCCCCCCCCCceeEecccCCCCcceeccCCCCCCCCeEEEE
Confidence 245588999998888999999999755444321 144677776666555443322221111112223333333
Q ss_pred eccCCCHHHHHHHHHHHHHhhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
=| --+-+...-.+..+++++.+
T Consensus 395 ~~-~~~~~~~~~~~~~~~~~~~~ 416 (431)
T 3ht4_A 395 QG-GLTYSHVKIAICSAIDELIE 416 (431)
T ss_dssp EC-CSSHHHHHHHHHHHHHHTCC
T ss_pred eC-CccHHHHHHHHHHHHHHHHH
Confidence 34 34455555556666666643
No 92
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.94 E-value=1e-25 Score=202.94 Aligned_cols=272 Identities=17% Similarity=0.203 Sum_probs=183.0
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++ +++||+|+++.|+|++....+...... .|.++..++.+ |++++++++ ++++++|+++++
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~ 173 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHV 173 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHHHh-ccCCeEEEEeCC
Confidence 5788888888 899999999999998765443322223 67888887753 789999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++|+|++|+.... +....++|++++|+||.+|++| + ||++.++++++.+.+..
T Consensus 174 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G--~-G~~~~~~~~~~~~~~~~ 250 (406)
T 1kmj_A 174 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWE 250 (406)
T ss_dssp CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHCCCSS
T ss_pred CccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCC--c-EEEEEeHHHHhhcCCcc
Confidence 99999999999999999999999999999943322 2223478999999999997766 4 99999998888776443
Q ss_pred hhhh------------------hccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCC
Q 020548 151 QGAL------------------MLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGL 206 (324)
Q Consensus 151 ~~~~------------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~ 206 (324)
.+.. .+..+++.....+. .+..+. .++...+++.++++++.+.|++. +.++..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 329 (406)
T 1kmj_A 251 GGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ- 329 (406)
T ss_dssp CSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT-
T ss_pred cCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-
Confidence 2100 01112222222211 222221 34456667788999999999987 44554331
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
..|+++.+.+++ .+...+.+.+.. .|+ .+..|..+. +......+
T Consensus 330 -----------------~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~~~--------------~~~~~~~g 373 (406)
T 1kmj_A 330 -----------------NRLGVIAFNLGK-HHAYDVGSFLDN---YGI-AVRTGHHCA--------------MPLMAYYN 373 (406)
T ss_dssp -----------------TCCSEEEEEETT-CCHHHHHHHHHH---TTE-ECEEECTTC--------------HHHHHHTT
T ss_pred -----------------CcCCEEEEEECC-CCHHHHHHHHhh---CCc-EEEeccccc--------------hHHHHhcC
Confidence 136688888863 124455555553 333 222221110 00011122
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
. ++++|+|++ ..+++++++.+.++|+++.
T Consensus 374 ~-~~~iRis~~-~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 374 V-PAMCRASLA-MYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp C-SCEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred C-CCeEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence 2 479999999 8877777888887777654
No 93
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.94 E-value=6.8e-26 Score=205.02 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=183.8
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++ +++||+|+++.|+|++....+...... .|.++..++. .|++++++++ ++++++|+++++
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~ 178 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHI 178 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHh-cCcEEEEeccCCCCCcCHHHHHHhh-CCCceEEEEeCC
Confidence 5788888888 899999999999999953322222112 6788888876 3899999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++|+|++|+.... +....++|++++|+||.++++| + |+++.++++++.+....
T Consensus 179 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g--~-G~~~~~~~~~~~~~~~~ 255 (420)
T 1t3i_A 179 SNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFF 255 (420)
T ss_dssp CTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCS
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCc--e-EEEEEchHHHhhcCcee
Confidence 99999999999999999999999999999843322 2233478999999999887766 4 99999998888776543
Q ss_pred hhhh-----------------hccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCC
Q 020548 151 QGAL-----------------MLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLE 207 (324)
Q Consensus 151 ~~~~-----------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~ 207 (324)
.+.. .+..++........ .+..+. .++...+++.++++++.+.|++. +.++..|...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 335 (420)
T 1t3i_A 256 GGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPK 335 (420)
T ss_dssp CSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGG
T ss_pred cCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCcc
Confidence 2110 01112222222111 122221 24566677889999999999987 4455544300
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
. .+.|+++++.+++ .+...+.+.+.. .|+ .+..|.... . ......+.
T Consensus 336 ~--------------~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~~~~~~------~--------~~~~~~g~ 382 (420)
T 1t3i_A 336 H--------------GDRAALASFNVAG-LHASDVATMVDQ---DGI-AIRSGHHCT------Q--------PLHRLFDA 382 (420)
T ss_dssp G--------------SCBCSEEEEEETT-BCHHHHHHHHHT---TTE-ECBCSCTTC------H--------HHHHHTTC
T ss_pred c--------------cccCCEEEEEECC-CCHHHHHHHHHH---CCe-EEeeccccc------h--------HHHHhcCC
Confidence 0 0146788888874 234456666653 343 222221110 0 00011222
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++++|+|++ ..+++++++.+.++|+++.
T Consensus 383 -~~~iRis~~-~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 383 -SGSARASLY-FYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp -CCCEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred -CCeEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 578999999 8777777777777776654
No 94
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.94 E-value=6.6e-25 Score=197.56 Aligned_cols=249 Identities=12% Similarity=0.092 Sum_probs=176.1
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccccChHHHHHHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
.+||+|+++.|+|+++...++ ..|.++..++.+|++++++.++. +++++|++++|+||||.+.|+++|.++|
T Consensus 130 ~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 204 (401)
T 2bwn_A 130 FPGLIIYSDSLNHASMIEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIA 204 (401)
T ss_dssp STTCEEEEETTCCHHHHHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred CCCCEEEECchhhHHHHHHHH-----HcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHH
Confidence 589999999999999988773 36888889988899999998832 5799999999999999999999999999
Q ss_pred HhcCCEEEEcCCCC-cCC-CCc------cCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 90 HDKGVTVVVDNTFS-PLV-LSP------ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 90 ~~~~~~~ivD~~~~-~~~-~~~------~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
+++|+++|+|++|+ +.. ... ... ..|++++|+||+++++| ||+++++++.+.+...........+.
T Consensus 205 ~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (401)
T 2bwn_A 205 EEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSL 280 (401)
T ss_dssp HHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCC
T ss_pred HHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC----CEEecCHHHHHHHHHhCcCceecCCC
Confidence 99999999999995 222 110 111 35899999999998764 99999998888876543311111222
Q ss_pred CC-CHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 160 TM-NPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
.+ .+..+...+..+... +...+++.++++++.+.|++.+.++..| .++++++.++..
T Consensus 281 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~~~~~~~ 340 (401)
T 2bwn_A 281 PPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--------------------GSHIVPVVIGDP 340 (401)
T ss_dssp CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--------------------SSSCEEEECCCH
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--------------------CCCeEEEEeCCh
Confidence 22 111112223223332 5667778899999999999876554422 245899999765
Q ss_pred HHHHHHHHHhh-ccccccccccccCCccceeccccccccCCCCHHHHHhcCC--CCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 237 ~~~~~~~~~l~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
.....+.+.+. . .|+ .+. |... .+. ..+++|+|++ ..+++++++.+.++|
T Consensus 341 ~~~~~~~~~L~~~---~gi-~v~----------~~~~------------~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 341 VHTKAVSDMLLSD---YGV-YVQ----------PINF------------PTVPRGTERLRFTPS-PVHDLKQIDGLVHAM 393 (401)
T ss_dssp HHHHHHHHHHHHH---HCE-ECC----------EECT------------TTSCTTCCEEEECCC-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCE-EEe----------ecCC------------CCCCCCCceEEEEee-CCCCHHHHHHHHHHH
Confidence 55667777763 3 333 111 1110 011 1368999999 888888888888888
Q ss_pred Hhhh
Q 020548 314 SRMQ 317 (324)
Q Consensus 314 ~~~~ 317 (324)
+.+-
T Consensus 394 ~~~~ 397 (401)
T 2bwn_A 394 DLLW 397 (401)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7664
No 95
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=4.7e-26 Score=205.36 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=182.0
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+++..++.++ +++||+|+++.|+|+++...+.....+ .|.++.+++.+ |++++++++ ++++++|++++|
T Consensus 97 ~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~ 174 (406)
T 3cai_A 97 VLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHR-YGAKVKWAEVDIETGELPTWQWESLI-SKSTRLVAVNSA 174 (406)
T ss_dssp HHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHH-HBCEEEEECCCTTTCCCCGGGHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHh-cCCeEEEEecCcccCCcCHHHHHHHh-CCCceEEEEeCC
Confidence 4677777777 789999999999999877666433222 58888888765 899999999 788999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCC-CCccCCCCcEEEeCCccccccCCCeeEE-EEEcChhHHHHHHHh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDL 149 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G-~i~~~~~~~~~l~~~ 149 (324)
+||||.+.|+++|.++|+++|+++|+|++|+ +.. .+....++|++++|+||++| ++ + | +++.++++.+.+.+.
T Consensus 175 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~--~-G~~~~~~~~~~~~l~~~ 250 (406)
T 3cai_A 175 SGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PP--I-GAMVFRDPSVMNSFGSV 250 (406)
T ss_dssp CTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS--C-EEEEESCHHHHHTSCCC
T ss_pred cCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcC-CC--c-CeEEEEehHHHhhcCCc
Confidence 9999999999999999999999999999994 222 22233479999999999885 34 4 7 999998887766543
Q ss_pred hhhh-----hhccCCCCCHHHH--H-HHhcCcc----------------cHHHHHHHHHHHHHHHHHHHHhCC-CceeCC
Q 020548 150 HQGA-----LMLLGPTMNPKVA--F-ELSERIP----------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYP 204 (324)
Q Consensus 150 ~~~~-----~~~~~~~~~~~~~--~-~~~~~~~----------------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p 204 (324)
.... ..+..+++..... . ..+.... .++...++..++++++.+.|++.+ .++..|
T Consensus 251 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (406)
T 3cai_A 251 STNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGR 330 (406)
T ss_dssp CSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCC
T ss_pred ccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC
Confidence 2100 0011222332221 1 1121111 245566677889999999999874 344333
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHh
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 284 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
. ...+++++|.+++ .+...+.+.+.. .|+ .+..|... .....
T Consensus 331 ~-----------------~~~~~~~~~~~~~-~~~~~~~~~L~~---~gi-~v~~g~~~----------------~~~~~ 372 (406)
T 3cai_A 331 P-----------------EAQIPVVSFAVHK-VPADRVVQRLAD---NGI-LAIANTGS----------------RVLDV 372 (406)
T ss_dssp C-----------------SSBCSEEEEEETT-BCHHHHHHHHHH---TTE-ECEECCSC----------------HHHHH
T ss_pred c-----------------cccCCEEEEEECC-cCHHHHHHHHHH---CCc-EEecCChH----------------HHHHH
Confidence 2 0135588998873 234556666653 333 22222200 00111
Q ss_pred cCCC--CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 285 AGIS--AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 285 ~~~~--~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|.+ .+++|+|++ ..+++++++.+.++|+.+
T Consensus 373 ~g~~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 373 LGVNDVGGAVTVGLA-HYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HTTTTTTCCEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred cCCCCCCCeEEEEee-cCCCHHHHHHHHHHHHHh
Confidence 2332 478999999 888888888888887654
No 96
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.94 E-value=1.2e-25 Score=209.32 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=110.2
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------CHHHHHHhhhcCCceEE
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~~v 67 (324)
+|+..++.+ ++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|
T Consensus 175 ~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l-~~~~k~v 248 (533)
T 3f6t_A 175 AAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-----LKDYELVEVDLHSYEKNDWEIEPNEIEKLK-DPSIKAL 248 (533)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-----GGGSEEEEECCCEETTTTSEECHHHHHHHS-CTTEEEE
T ss_pred HHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-----HcCCeEEEEEecCCcccCCCCCHHHHHHHh-CCCCeEE
Confidence 577888887 78999999999999999887663 356777666652 899999999 8899999
Q ss_pred EEecCCCCcccccChH---HHHHHHH-hcCCEEEEcCCCCcCCCCccC-----CCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 68 YFESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSPLVLSPAR-----LGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~---~i~~l~~-~~~~~~ivD~~~~~~~~~~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
++++|+||||.+.+.+ +|+++|+ ++|+++|+||+|+++...... .+.+++++|+||.+|++|+|+ ||+++
T Consensus 249 ~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~ 327 (533)
T 3f6t_A 249 IVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRL-GVIAL 327 (533)
T ss_dssp EEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCE-EEEEE
T ss_pred EEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccce-EEEEE
Confidence 9999999999998755 8888888 689999999999766543221 146799999999999899997 99988
Q ss_pred Chh
Q 020548 139 PAN 141 (324)
Q Consensus 139 ~~~ 141 (324)
+++
T Consensus 328 ~~~ 330 (533)
T 3f6t_A 328 NEK 330 (533)
T ss_dssp ESS
T ss_pred CcH
Confidence 765
No 97
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.94 E-value=5.9e-26 Score=200.74 Aligned_cols=253 Identities=15% Similarity=0.169 Sum_probs=176.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-CCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-SDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++++++ ||+|+++.|+|.++...++ ..|.++..++. ++.+. +..+++++|++++|+||||.+.
T Consensus 78 ~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~----~~~~~~~~v~i~~p~nptG~~~ 146 (350)
T 3fkd_A 78 AAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-----MYEHEVCFYPSNEDIGE----ADFSNMDFCWLCNPNNPDGRLL 146 (350)
T ss_dssp HHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-----HTTCEEEEEETTSCGGG----SCCTTCSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-----HcCCeEEEEecCCcccc----CccCCCCEEEEeCCCCCcCCCC
Confidence 57888888877 9999999999999988774 37889989887 43222 2126889999999999999999
Q ss_pred ChHHHHHHHHhcC-CEEEEcCCCCcCCCCcc-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 81 NIPELSRLAHDKG-VTVVVDNTFSPLVLSPA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 81 ~~~~i~~l~~~~~-~~~ivD~~~~~~~~~~~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
+.+++.++++.++ .++|+||+|..+..... ..+.+++++|+||+++++|.|+ ||++.++++.+.+......
T Consensus 147 ~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~ 225 (350)
T 3fkd_A 147 QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRI-GYIVANKDFMKRVAAFSTP 225 (350)
T ss_dssp CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCC-EEEECCHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchhe-EeEEeCHHHHHHHHHhCCC
Confidence 9999999988875 79999999966543211 2357799999999999889997 9999999999988776541
Q ss_pred hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
...+.+.+..+..++.....+..+.+++.++++++.+.|++++ ..+. |. .|+++++
T Consensus 226 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~-------------------~~~~~~~ 282 (350)
T 3fkd_A 226 ---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PS-------------------GTTFFLL 282 (350)
T ss_dssp ---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CC-------------------SSSEEEE
T ss_pred ---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CC-------------------CCcEEEE
Confidence 2222233333333444433233344455588999999999883 3442 33 4678889
Q ss_pred EeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHH
Q 020548 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 311 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~ 311 (324)
.++.. +...+.+.+.. +.|+ .++.|.. + .+..++++|+|++ ..+.++.|.+
T Consensus 283 ~~~~~-~~~~l~~~L~~--~~gi-~v~~g~~----------f-----------~~~~~~~iRis~~----~~~~~~~l~~ 333 (350)
T 3fkd_A 283 RLKKG-TAAELKKYMLE--EYNM-LIRDASN----------F-----------RGLDESYVRITTQ----RPAQNQLFIK 333 (350)
T ss_dssp EESSS-CHHHHHHHHHH--TTCE-ECEECTT----------S-----------TTCCTTEEEEECC----CHHHHHHHHH
T ss_pred ECCCC-CHHHHHHHHHH--HCCE-EEEeCcc----------C-----------CCCCCCEEEEEcC----CHHHHHHHHH
Confidence 99743 45667776653 1333 2222221 1 0223589999999 3344567777
Q ss_pred HHHhhhh
Q 020548 312 ALSRMQD 318 (324)
Q Consensus 312 ~l~~~~~ 318 (324)
+|+.+.+
T Consensus 334 al~~~~~ 340 (350)
T 3fkd_A 334 ALETFLE 340 (350)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777754
No 98
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.94 E-value=1.1e-25 Score=204.09 Aligned_cols=265 Identities=13% Similarity=0.110 Sum_probs=174.2
Q ss_pred chHH--HHHHHccC--C---------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh-cCC
Q 020548 2 SAIS--SVLMQLCS--S---------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV-QGR 63 (324)
Q Consensus 2 ~ai~--~~~~~~~~--~---------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~-~~~ 63 (324)
+|+. .+++++++ | ||+|+++.|+|+++...++ ..|.++..++.+ |+++++++++ +++
T Consensus 98 ~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~ 172 (423)
T 3ez1_A 98 LELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ-----TLGFELLTVDMQSDGPDVDAVERLAGTDPS 172 (423)
T ss_dssp HHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH-----HHTCEEEEEEEETTEECHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH-----HcCCEEEeccCCCCCCCHHHHHHHHhhCCC
Confidence 4665 77777777 8 5999999999999988874 267777776653 8999999995 468
Q ss_pred ceEEEEe-cCCCCcccccChH---HHHHHH-HhcCCEEEEcCCCCcC--CC-C------c-------cCCCCcEEEeCCc
Q 020548 64 TKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPL--VL-S------P-------ARLGADVVVHSIS 122 (324)
Q Consensus 64 ~~~v~~~-~~~nptG~~~~~~---~i~~l~-~~~~~~~ivD~~~~~~--~~-~------~-------~~~~~d~~~~S~s 122 (324)
+++|++. +|+||||.+.+.+ +|+++| +++|+++|+||+|..+ .. . . ...+.+++++|+|
T Consensus 173 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 252 (423)
T 3ez1_A 173 VKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTS 252 (423)
T ss_dssp EEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEEST
T ss_pred ceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCch
Confidence 9999865 7999999998866 888888 8999999999999632 21 1 0 1236789999999
Q ss_pred cccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cc----cHHHHHHHHHHHHHHHHHHHHh-
Q 020548 123 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IP----HLGLRMKEHCHRALIFARRMKK- 196 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~L~~- 196 (324)
|+ +++|.|+ ||+++++++++.+...... .....+.+.+.++..++.. .. .+....+.+.++++.+.+.|.+
T Consensus 253 K~-~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (423)
T 3ez1_A 253 KI-TFAGAGL-GFVASSEDNIRWLSKYLGA-QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAE 329 (423)
T ss_dssp TT-SCSSSSC-EEEEECHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-ccCCcce-EEEEeCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 5779997 9999999999998877651 1122333444444444433 12 2333344456666766666655
Q ss_pred ---CC--CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccccccc-CCccceecccc
Q 020548 197 ---LG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSG 270 (324)
Q Consensus 197 ---~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~-g~~~~~~~~~~ 270 (324)
.+ ..+..|. .|.++++.++.. ....+.+.+.. .|+ .+.. |..... .
T Consensus 330 l~~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~~---~gv-~v~~~g~~~~~----~ 381 (423)
T 3ez1_A 330 LGEGGEYATWTLPK-------------------GGYFISLDTAEP-VADRVVKLAEA---AGV-SLTPAGATYPA----G 381 (423)
T ss_dssp HTTTTSSEEECCCS-------------------BSSCEEEEESSS-CHHHHHHHHHH---TTE-ECCCTTTTSST----T
T ss_pred cCcCCCceEEeCCC-------------------ccEEEEEECCCC-cHHHHHHHHHH---CCc-EEecCcccccC----C
Confidence 44 3444444 678999999743 34455555553 343 2222 211100 0
Q ss_pred ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH---HHHHHHHHHHHhhh
Q 020548 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLD---QRWSQFEKALSRMQ 317 (324)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~---~~~~~l~~~l~~~~ 317 (324)
.+..++++|+|++ ..+.+ +.++.|.++++.+.
T Consensus 382 --------------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 382 --------------QDPHNRNLRLAPT-RPPVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp --------------CCSSSCEEEECCS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 0123589999999 64333 33455555555443
No 99
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.94 E-value=2.1e-25 Score=202.18 Aligned_cols=215 Identities=12% Similarity=0.092 Sum_probs=150.4
Q ss_pred HHHHHHccCC------------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhcCCceEEE
Q 020548 5 SSVLMQLCSS------------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 5 ~~~~~~~~~~------------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~~~~~v~ 68 (324)
..++++++.+ +|+|++++|+|+++...++ ..|.++..++. .|++++++++.+.++++|+
T Consensus 109 ~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~ 183 (422)
T 3d6k_A 109 DLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-----HFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMW 183 (422)
T ss_dssp HHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----HHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-----HcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEE
Confidence 4555666655 3489999999999998874 25777777665 3899999999334889988
Q ss_pred -EecCCCCcccccChH---HHHHHHH-hcCCEEEEcCCCCc--CCCC-----cc--------CCCCcEEEeCCccccccC
Q 020548 69 -FESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSP--LVLS-----PA--------RLGADVVVHSISKFISGG 128 (324)
Q Consensus 69 -~~~~~nptG~~~~~~---~i~~l~~-~~~~~~ivD~~~~~--~~~~-----~~--------~~~~d~~~~S~sK~~~~~ 128 (324)
+++||||||.+.+.+ +|+++|+ ++|+++|+||+|.. +... +. ..+.+++++|+||+ +++
T Consensus 184 ~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~ 262 (422)
T 3d6k_A 184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THA 262 (422)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCT
T ss_pred EcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCc
Confidence 588999999998765 7788888 89999999999953 5321 22 23678999999999 678
Q ss_pred CCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHh----CCC-
Q 020548 129 ADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKK----LGL- 199 (324)
Q Consensus 129 g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~----~~~- 199 (324)
|+|+ ||+++++++++.+...... ...+.+.+.+.++..++... .++....+.+.++++.+.+.|++ .+.
T Consensus 263 Glri-G~~~~~~~l~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~ 340 (422)
T 3d6k_A 263 GSGV-SFFASSKENIEWYASHANV-RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA 340 (422)
T ss_dssp TSSC-EEEECCHHHHHHHHHHHHH-HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccce-EEEEeCHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCce
Confidence 9997 9999999999988876552 11223334444444445431 22334445567788888887765 232
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.+..|. +|.++|+.++.. ....+.+.+.
T Consensus 341 ~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~ 368 (422)
T 3d6k_A 341 KWTSPT-------------------GGYFISVDVVPG-TASRVVELAK 368 (422)
T ss_dssp EECCCS-------------------BSSCEEEEESTT-CHHHHHHHHH
T ss_pred EEeCCC-------------------cceEEEEECCCC-CHHHHHHHHH
Confidence 434443 577899999742 2344555554
No 100
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.94 E-value=2.1e-25 Score=200.88 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=134.3
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEE
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~ 69 (324)
+|+..++..+ ++|||+|++++|+|.++...++ ..|.++..++.+ |++++++.++ +++++++++
T Consensus 107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i 181 (401)
T 7aat_A 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181 (401)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-----HcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEe
Confidence 4666666554 4899999999999999998884 267777776642 7887777763 257899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------------cCCCCcEEEeCCccccccCCCeeEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------------ARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------------~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|..+.... ...+.+++++|+||.|+++|+|+ |
T Consensus 182 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G 260 (401)
T 7aat_A 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-G 260 (401)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-E
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCce-E
Confidence 999999998865 7788999999999999999997765432 12257799999999999999997 9
Q ss_pred EEEc---Chh----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 135 AVCG---PAN----LVNSMMDLHQGALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 135 ~i~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
|++. +++ +...+..... ......+...+..+..++.. ..++....+++.++++++.+.|++.+
T Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 261 AFTVICRDAEEAKRVESQLKILIR-PMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHH-hccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9865 555 3344444333 11122222222222222322 22244556678899999999999875
No 101
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.94 E-value=5.1e-25 Score=197.42 Aligned_cols=225 Identities=14% Similarity=0.165 Sum_probs=157.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH--HHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~--~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.+.|.+. ...+. . .|.++..++.+ |++++++++.++++++|++++|+|
T Consensus 85 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 159 (393)
T 3kgw_A 85 CAMETALFNLLEPGDSFLTGTNGIWGMRAAEIAD----R-IGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGES 159 (393)
T ss_dssp THHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHH----H-cCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCC
Confidence 688899999999999999999988643 33331 2 67888777643 899999999333899999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
|||.+.|+++|.++|+++|+++|+|++|+ + ...+....++|+++.|+||+++++. .+ |+++.++++++.+.....+
T Consensus 160 ptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~-g~-g~~~~~~~~~~~~~~~~~~ 237 (393)
T 3kgw_A 160 STGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPP-GI-SLISFNDKAKYKVYSRKTK 237 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCS-SC-EEEEECHHHHHHHHTCSSC
T ss_pred cchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCC-ce-eEEEECHHHHHHHhccCCC
Confidence 99999999999999999999999999984 2 2233344578999999999875432 34 9999999998888653221
Q ss_pred h-------------------hhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 153 A-------------------LMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 153 ~-------------------~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
. ......++.......+ +... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 314 (393)
T 3kgw_A 238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKD--- 314 (393)
T ss_dssp CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSS---
T ss_pred CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCC---
Confidence 0 0011122333222222 1111 12566777789999999999999876554332
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.....+.++++.++...+..++.+.+..
T Consensus 315 ------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 342 (393)
T 3kgw_A 315 ------------PEIRLPTITTVTVPAGYNWRDIVSYVLD 342 (393)
T ss_dssp ------------GGGBCSSEEEEECCTTBCHHHHHHHHHH
T ss_pred ------------hhhcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 0112456778888643345566666653
No 102
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.94 E-value=2.7e-25 Score=201.08 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=152.2
Q ss_pred chHHHHHHHccCCCC-----EEEEc-CCCchhHHHHHhhhcC-cccceeEEEecC------CCHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSGG-----HVVAA-RTLYGGTHALLTHFFP-RACNITTTFVDI------SDHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd-----~vl~~-~p~y~~~~~~~~~~~~-~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~ 68 (324)
+|+..++++++++|| +|+++ .|+|+++...+..... ...+..+..++. .|+++++ + ++++++|+
T Consensus 109 ~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~v~ 185 (417)
T 3g7q_A 109 SAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--I-GEETGMIC 185 (417)
T ss_dssp HHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--C-CTTEEEEE
T ss_pred HHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--c-ccCceEEE
Confidence 588899999999988 89997 9999998765421110 002334444433 2777776 5 77899999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+++|+||||.+++ +++|+++|+++|+++|+||+|+.+.. .+...+.++++.|+|| ++++|.|+ ||+++
T Consensus 186 ~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~-G~~~~ 263 (417)
T 3g7q_A 186 VSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRC-GIIIA 263 (417)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCC-EEEEC
T ss_pred ECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcce-EEEEe
Confidence 9999999999988 88999999999999999999954221 1222368899999999 58899997 99999
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH---H-HHHHHHHHHHHHHHHHHhC----CCceeCCCCCCCc
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG---L-RMKEHCHRALIFARRMKKL----GLKVLYPGLEDHP 210 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~~ 210 (324)
++++++.+...... ....++.+.+.++..++....... . ..+.+.++++.+.+.|++. +..+..|.
T Consensus 264 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----- 337 (417)
T 3g7q_A 264 NDKTITAIANMNGI-ISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE----- 337 (417)
T ss_dssp CHHHHHHHHHHHHH-HCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC-----
T ss_pred CHHHHHHHHHhhcc-eeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC-----
Confidence 99999998876652 122334444444444444433222 2 3345677888888888773 23444444
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
.|.++|+.++. ..+...+.+.+..
T Consensus 338 --------------~g~~~~~~~~~~~~~~~~l~~~l~~ 362 (417)
T 3g7q_A 338 --------------GAIFLWLWFKDLPITTELLYQRLKA 362 (417)
T ss_dssp --------------BSSEEEEECTTCSSCHHHHHHHHHH
T ss_pred --------------cceEEEEEcCCCCCCHHHHHHHHHH
Confidence 67889999874 3345667776653
No 103
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.94 E-value=2.2e-25 Score=201.24 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=135.1
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc--CCceEEEEecCCCCcc
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ--GRTKVLYFESISNPTL 77 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~--~~~~~v~~~~~~nptG 77 (324)
++++++++||+|++++|+|.++...++ ..|.++..++.. |++++++++++ ++++++++++|+||||
T Consensus 123 ~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG 197 (409)
T 4eu1_A 123 LLNRFVANCNRIYGPDVGYPNHESIFA-----KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTG 197 (409)
T ss_dssp HGGGTSSSCCEEEEESSCCTHHHHHHH-----HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTC
T ss_pred HHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCC
Confidence 345567899999999999999998884 368888887651 89999999842 3566777799999999
Q ss_pred cccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------C-CCCcEEEeCCccccccCCCeeEEEE---EcC
Q 020548 78 AVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------R-LGADVVVHSISKFISGGADIIAGAV---CGP 139 (324)
Q Consensus 78 ~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~-~~~d~~~~S~sK~~~~~g~r~~G~i---~~~ 139 (324)
.+.+ +++|+++|+++|+++|+||+|+++..... + .+..++++|+||.+|++|+|+ ||+ +++
T Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~ 276 (409)
T 4eu1_A 198 VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTAS 276 (409)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCC
Confidence 9987 55699999999999999999976654320 1 245689999999999999997 995 567
Q ss_pred hh----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 140 AN----LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 140 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
++ +.+.+..... ......+.+.+..+..++... ..+....+++.++++.+.+.|++.+
T Consensus 277 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 345 (409)
T 4eu1_A 277 AEEAKRLVSQLALLIR-PMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG 345 (409)
T ss_dssp HHHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77 5555554433 111222333343444344432 2244566778999999999999986
No 104
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=5.4e-25 Score=197.40 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=176.0
Q ss_pred chHHHHHHHccCC-------------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-
Q 020548 2 SAISSVLMQLCSS-------------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG- 62 (324)
Q Consensus 2 ~ai~~~~~~~~~~-------------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~- 62 (324)
+|+..++.+++.+ ||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++
T Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~ 170 (397)
T 3f9t_A 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE-----MMDLEYIYAPIKEDYTIDEKFVKDAV-EDY 170 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH-----HHTCEEEEECBCTTSSBCHHHHHHHH-HHS
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH-----HcCceeEEEeeCCCCcCCHHHHHHHH-hhc
Confidence 4677777777665 9999999999999988874 368888888875 899999999 55
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--C-----------ccCC--CCcEEEeCCcccccc
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--S-----------PARL--GADVVVHSISKFISG 127 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~-----------~~~~--~~d~~~~S~sK~~~~ 127 (324)
++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+++.. . +... ++|+++.|+||++++
T Consensus 171 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 250 (397)
T 3f9t_A 171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHC 250 (397)
T ss_dssp CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCC
T ss_pred CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCC
Confidence 899999999999999999999999999999999999999954321 0 2222 789999999998865
Q ss_pred CCCeeEEEEE-cChhHHHHHHHhhhhhhhc------cCCCC--CHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 128 GADIIAGAVC-GPANLVNSMMDLHQGALML------LGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 128 ~g~r~~G~i~-~~~~~~~~l~~~~~~~~~~------~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+.++ |+++ .++.+.+.+..... +... .+... .....+.++. ....+....++..++++++.+.|++
T Consensus 251 -~~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 327 (397)
T 3f9t_A 251 -PIPS-GGILFKDIGYKRYLDVDAP-YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE 327 (397)
T ss_dssp -CSSC-EEEEESSGGGGGGTCEECT-TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCc-eEEEEeCHHHHHhhccCCc-cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5575 6665 45555554422111 0000 01111 1122222222 2233556777788999999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 276 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 276 (324)
.+..+..|. .++++++.+++ ...+.+.+.. .|+ .+..+
T Consensus 328 ~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~l~~---~gi-~v~~~---------------- 365 (397)
T 3f9t_A 328 NNFKPVIEP-------------------ILNIVAIEDED---YKEVCKKLRD---RGI-YVSVC---------------- 365 (397)
T ss_dssp TTCCBSSCC-------------------SSSEEEEECTT---HHHHHHHHHH---TTC-BCEEC----------------
T ss_pred CCCEEEcCC-------------------CccEEEEEeCC---HHHHHHHHHh---CCe-EEecc----------------
Confidence 876544343 46688888875 3455566553 232 11111
Q ss_pred CCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 277 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 277 ~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..++++|++++ ...++++++.+.++|+++
T Consensus 366 ----------~~~~~~Ri~~~-~~~~~e~i~~~~~~l~~~ 394 (397)
T 3f9t_A 366 ----------NCVKALRIVVM-PHIKREHIDNFIEILNSI 394 (397)
T ss_dssp ----------SSSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCEEEEEEc-CCCCHHHHHHHHHHHHHh
Confidence 11478999999 887888888888777665
No 105
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.93 E-value=6.6e-25 Score=204.36 Aligned_cols=141 Identities=11% Similarity=0.224 Sum_probs=112.9
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++++ +++|||+|++++|+|+.+..... + .. .|.++.+++. .|++++++++ ++++++|++
T Consensus 176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~-~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~v~l 251 (546)
T 2zy4_A 176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE-L-AQ-YALEEVAINADPSLNWQYPDSELDKLK-DPAIKIFFC 251 (546)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH-S-TT-SCCEEEEEECBGGGTTBCCHHHHGGGG-STTEEEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH-H-cC-CCcEEEEEecCcccCCCCCHHHHHHhh-CCCCeEEEE
Confidence 567777776 57899999999999999987652 1 12 4677777764 3789998887 788999999
Q ss_pred ecCCCCcccccC---hHHHHHHH--HhcCCEEEEcCCCCcCCCCc---cC--CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 70 ESISNPTLAVAN---IPELSRLA--HDKGVTVVVDNTFSPLVLSP---AR--LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~--~~~~~~~ivD~~~~~~~~~~---~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
++|+||||.+.+ +++|+++| +++|+++|+||+|+.+...+ .. .+.++++.|+||.+|++|+|+ ||++++
T Consensus 252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~ 330 (546)
T 2zy4_A 252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRL-GVVAAH 330 (546)
T ss_dssp ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCE-EEEEEE
T ss_pred ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcce-EEEEEC
Confidence 999999999986 56778888 78999999999997664322 11 157899999999999999997 999887
Q ss_pred hh-HHHHHH
Q 020548 140 AN-LVNSMM 147 (324)
Q Consensus 140 ~~-~~~~l~ 147 (324)
++ +++.+.
T Consensus 331 ~~~l~~~l~ 339 (546)
T 2zy4_A 331 QQNVFDLAL 339 (546)
T ss_dssp SSCHHHHHH
T ss_pred CHHHHHHHH
Confidence 75 777763
No 106
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.93 E-value=1.4e-24 Score=194.77 Aligned_cols=269 Identities=13% Similarity=0.051 Sum_probs=175.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|++++|+|+++. .. ..... .|.++..++.+ |++++++++++ +++++|++++++||
T Consensus 70 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 70 LGLEAAAASLISPDDVVLNLASGVYGKG-FG-YWAKR-YSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHH-HCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred HHHHHHHHHhcCCCCEEEEecCCcccHH-HH-HHHHH-cCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 4788888888999999999999998873 11 11112 57777777653 89999999853 57999999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh--
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-- 151 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-- 151 (324)
||.+.|+++|.++|+++|+++|+|++|+. ...+....++|++++|+||+++++ ..+ |+++.++++++.+.....
T Consensus 147 tG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~-~g~-G~l~~~~~~~~~l~~~~~g~ 224 (392)
T 2z9v_A 147 SGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAP-PGL-TMMGVSERAWAKMKANPLAP 224 (392)
T ss_dssp GTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCC-SCC-EEEEECHHHHHHHHTCTTSC
T ss_pred CceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCC-Cce-eEEEECHHHHHHhhhccCCC
Confidence 99999999999999999999999999842 112223347899999999976542 223 999999998888764210
Q ss_pred ------------h--hhhccCCCCCHHHHH---HHhcCcc-c-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 152 ------------G--ALMLLGPTMNPKVAF---ELSERIP-H-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 152 ------------~--~~~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
+ ......+++...... .++.... . ++...+++.++++++.+.|++.+.++..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------- 297 (392)
T 2z9v_A 225 RASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAAS------- 297 (392)
T ss_dssp CSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSS-------
T ss_pred CceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCC-------
Confidence 0 000112233332211 1222111 1 455667788899999999998765554322
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
+....++++++.++...+...+.+.+.. ++|+ .+..|.. + ..++.+
T Consensus 298 --------~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~gi-~v~~g~~------~-----------------~~~~~l 343 (392)
T 2z9v_A 298 --------DSIASPTTTAVRTPDGVDEKALRQAARA--RYGV-VFSSGRG------E-----------------TLGKLT 343 (392)
T ss_dssp --------GGGBCTTEEEEECCTTCCHHHHHHHHHH--HHCE-ECEECCG------G-----------------GTTTEE
T ss_pred --------ccccCCceEEEECCCCCCHHHHHHHHHh--cCCE-EEecCCC------C-----------------CCCCeE
Confidence 0001466889998632335566666653 1233 2222210 0 124789
Q ss_pred EEEe-ccCCCHHHHHHHHHHHHHhhh
Q 020548 293 RMSV-GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 293 R~s~-g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|+|+ + ...+++.++.+.++|+.+-
T Consensus 344 Ri~~~~-~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 344 RIGHMG-PTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp EEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred EEeCcc-cccCHHHHHHHHHHHHHHH
Confidence 9995 5 3555666666666665543
No 107
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.93 E-value=5.4e-25 Score=197.67 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=153.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH--HHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH--ALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~--~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+++. ..++ . .|.++..++. .|++++++++ ++ ++++|++++|+
T Consensus 80 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~ 153 (396)
T 2ch1_A 80 AGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE----R-YGADVRTIEGPPDRPFSLETLARAI-ELHQPKCLFLTHGD 153 (396)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTSCCCHHHHHHHH-HHHCCSEEEEESEE
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHH----H-cCCceEEecCCCCCCCCHHHHHHHH-HhCCCCEEEEECCC
Confidence 4788888888999999999999999974 2331 2 6888888774 3899999999 55 79999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh-
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH- 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~- 150 (324)
||||.+.|+++|.++|+++|+++|+|++|+.. ..+....++|+++.|+||+++++ ..+ |+++.++++++.+....
T Consensus 154 nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~-~g~-g~~~~~~~~~~~~~~~~~ 231 (396)
T 2ch1_A 154 SSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAP-PGI-TPISISPKALDVIRNRRT 231 (396)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCC-SSC-EEEEECHHHHHHHHTCSS
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCC-CCe-EEEEECHHHHHhhhhccC
Confidence 99999999999999999999999999998411 11223346899999999987664 344 89988888887775321
Q ss_pred -------------hhhh-----hccCCCCCHH---HHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 151 -------------QGAL-----MLLGPTMNPK---VAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 151 -------------~~~~-----~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
.+.. ....++.... ++..++... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 309 (396)
T 2ch1_A 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKD-- 309 (396)
T ss_dssp CCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCS--
T ss_pred cccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCC--
Confidence 0000 0111222222 222222222 23556677788999999999998866554332
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.....+.++++.++...+...+.+.|.
T Consensus 310 -------------~~~~~~~~~~~~~~~~~~~~~~~~~L~ 336 (396)
T 2ch1_A 310 -------------PRHRLPTVTGIMIPKGVDWWKVSQYAM 336 (396)
T ss_dssp -------------GGGBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred -------------ccccCCceEEEEcCCCCCHHHHHHHHH
Confidence 000134588998863233556666664
No 108
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=5.5e-25 Score=200.73 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=156.9
Q ss_pred chHHHHHHHccCCCC--------------EEEEc-CCCchhHHHHHhh--hcCcccceeEEEecC----------CCHHH
Q 020548 2 SAISSVLMQLCSSGG--------------HVVAA-RTLYGGTHALLTH--FFPRACNITTTFVDI----------SDHEM 54 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd--------------~vl~~-~p~y~~~~~~~~~--~~~~~~g~~~~~~~~----------~d~~~ 54 (324)
+|+..++++++++|| +|+++ .|+|+.+...+.. .... .|..+..++. .|+++
T Consensus 117 ~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~~ 195 (444)
T 3if2_A 117 NAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA-VLPHIDEVTHDGEEGFFKYRVDFEA 195 (444)
T ss_dssp HHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEE-CCCEEEEEEETTEEEEEEEECCHHH
T ss_pred HHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhc-cCceEEecccccccCccccCCCHHH
Confidence 578889999999998 78876 8999988753210 0111 4556655542 38999
Q ss_pred HHHh---hhcCCceEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCC----CC---ccCCCCcEEEeCC
Q 020548 55 VNSA---IVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLV----LS---PARLGADVVVHSI 121 (324)
Q Consensus 55 l~~~---l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~----~~---~~~~~~d~~~~S~ 121 (324)
|+++ + ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+. .. +...+.+++++|+
T Consensus 196 l~~~l~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 274 (444)
T 3if2_A 196 LENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSL 274 (444)
T ss_dssp HHTCHHHH-TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEES
T ss_pred HHHHHHhc-CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEech
Confidence 9998 5 678999999999999999988 8889999999999999999995422 11 1123688999999
Q ss_pred ccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH---HH-HHHHHHHHHHHHHHHHHhC
Q 020548 122 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~L~~~ 197 (324)
||+ +++|.|+ ||++.++++++.+...... ....++.+.+.++..++...... .. ..+.+.++++.+.+.|++.
T Consensus 275 sK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (444)
T 3if2_A 275 SKI-GLPGMRT-GIIVADAKVIEAVSAMNAV-VNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQA 351 (444)
T ss_dssp TTT-TCGGGCC-EEEECCHHHHHHHHHHHHH-HHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-cCCCCce-EEEEECHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997 7889997 9999999999988876652 22334444444444444443322 12 3345677888888888763
Q ss_pred -C---CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 198 -G---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 198 -~---~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
+ ..+..|. .|.++|+.++. ..+...+.+.+..
T Consensus 352 l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~ 388 (444)
T 3if2_A 352 LGDYPLMIHKPE-------------------GAIFLWLWFKDLPISTLDLYERLKA 388 (444)
T ss_dssp SSSSSEEEECCC-------------------BSSEEEEEETTCSSCHHHHHHHHHH
T ss_pred cccCCceEecCC-------------------ccEEEEEEcCCCCCCHHHHHHHHHH
Confidence 2 2333343 57789999874 3345667777653
No 109
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.93 E-value=8e-25 Score=198.33 Aligned_cols=277 Identities=15% Similarity=0.122 Sum_probs=179.7
Q ss_pred chHHHHHHHccC----CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCS----SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~----~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++++ +||+|+++.++|+++...+..+ .. .|.++..++.+ |++++++++ ++++++|+++++
T Consensus 96 ~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 172 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHV 172 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSB
T ss_pred HHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HH-cCCEEEEeccCCCCccCHHHHHHhc-CCCcEEEEEeCC
Confidence 467777777663 8999999999999998777433 22 58888888875 899999999 789999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcC-C-CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-V-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|+++|+++|+++|+|++|+.. . .+....++|++++|+||+++++| + |+++.+++..+.+....
T Consensus 173 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~~~~~~~~ 249 (423)
T 3lvm_A 173 NNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQM 249 (423)
T ss_dssp CTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSS
T ss_pred CCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC--e-EEEEEeccccCCCCccc
Confidence 999999999999999999999999999998332 2 33445578999999999887665 4 99988876655544332
Q ss_pred hhhh---hccCCCCCHHHHHH---HhcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccC
Q 020548 151 QGAL---MLLGPTMNPKVAFE---LSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 151 ~~~~---~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+.. ....+++....... .+... ..++...+++.++++++.+.|++. +..+..+.-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 313 (423)
T 3lvm_A 250 HGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLE---------------- 313 (423)
T ss_dssp CSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCST----------------
T ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcc----------------
Confidence 1000 01122223222222 12111 124566677889999999999887 445543320
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
...++++.|.+++ .+...+.+.+.. +.+..|..+.... ..........+.. ++.+|++++
T Consensus 314 ~~~~~~~~~~~~~-~~~~~l~~~l~~------i~v~~g~~~~~~~--------~~~~~~~~~~g~~~~~~~~~iRi~~~- 377 (423)
T 3lvm_A 314 HGAPNILNVSFNY-VEGESLIMALKD------LAVSSGSACTSAS--------LEPSYVLRALGLNDELAHSSIRFSLG- 377 (423)
T ss_dssp TBCTTEEEEEETT-SCHHHHHHHTTT------EECBCCCC-------------CCCCHHHHHHTCCHHHHHTEEEEECC-
T ss_pred ccCCCeEEEEeCC-CCHHHHHHHHhh------heeccCccccCCC--------ccccHHHHHhCCCccccCceEEEECC-
Confidence 0134577888753 234556666653 2334343221100 0001112223433 489999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
...++++++.+.++|+++
T Consensus 378 ~~~t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 378 RFTTEEEIDYTIELVRKS 395 (423)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 766666555555555443
No 110
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.93 E-value=1.3e-24 Score=196.82 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=137.8
Q ss_pred chHHHH--HHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----C---CHHHHHHhhhc--CCceEEEEe
Q 020548 2 SAISSV--LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~l~~--~~~~~v~~~ 70 (324)
+|+..+ +.+++++||+|++++|+|+++...++ ..|.++..++. + |++++++.+++ +++++++++
T Consensus 128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 202 (420)
T 4f4e_A 128 GALKIGADFLRTLNPKAKVAISDPSWENHRALFD-----MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHA 202 (420)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 467777 44568999999999999999988874 36777777766 2 89999999932 678999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----------cCCCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----------~~~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++.... ...+.+++++|+||.|+++|+|+ ||+
T Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~ 281 (420)
T 4f4e_A 203 CCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV-GAL 281 (420)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE-EEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc-EEE
Confidence 99999999965 6688999999999999999997765431 12367899999999999899997 998
Q ss_pred Ec---ChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 137 CG---PANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 137 ~~---~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+. ++++++.+...... ......+...+..+...+... .+++...+++.++++.+.+.|++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 282 SIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 55655543322110 111222333333333333331 224566677899999999999987
No 111
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.93 E-value=1.6e-24 Score=194.57 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=136.7
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc-CCceEEEEec
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ-GRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-~~~~~v~~~~ 71 (324)
+|+..+++.++. | |+|++++|+|+.+...++ ..|.++..++. .|++++++++.+ ++++++++++
T Consensus 108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~ 181 (405)
T 3k7y_A 108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIE-----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQI 181 (405)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHH-----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHH-----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeC
Confidence 477888888877 8 999999999999998884 37888877764 189999999843 4578888876
Q ss_pred -CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c----C-CCCcEEEeCCccccccCCCeeEEE
Q 020548 72 -ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A----R-LGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 72 -~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~----~-~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+|||||.+.+ +++|+++|+++|+++|+||+|.++.... . . .+..++++|+||.|+++|+|+ ||
T Consensus 182 ~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRi-G~ 260 (405)
T 3k7y_A 182 SCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERA-GA 260 (405)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTE-EE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccc-eE
Confidence 4999999975 6678889999999999999997765431 1 1 146799999999999999997 99
Q ss_pred EE---cChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHH----hCC
Q 020548 136 VC---GPANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMK----KLG 198 (324)
Q Consensus 136 i~---~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~----~~~ 198 (324)
++ .++++++.+...... ....+.+...+..+..++... +.+....+++.++++.+.+.|+ +.+
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g 340 (405)
T 3k7y_A 261 LHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYN 340 (405)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 85 366666655432110 001111222333333334331 2234455668999999999999 776
Q ss_pred C
Q 020548 199 L 199 (324)
Q Consensus 199 ~ 199 (324)
.
T Consensus 341 ~ 341 (405)
T 3k7y_A 341 L 341 (405)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.93 E-value=8.7e-25 Score=195.32 Aligned_cols=278 Identities=15% Similarity=0.155 Sum_probs=176.2
Q ss_pred chHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.+++ ++||+|+++.|+|+++...+..+ .. .|.++..++.+ |++++++++ ++++++|++++|
T Consensus 72 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 148 (384)
T 1eg5_A 72 ESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL-SM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAA 148 (384)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH-HH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHH-Hh-cCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEEECC
Confidence 47788888887 79999999999999987766321 12 58888888763 899999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcC--CEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH--HHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKG--VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VNSM 146 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~--~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~--~~~l 146 (324)
+||||.+.|+++|.++|+++| +++|+|++|+ ....+....++|++++|+||+++++| + ||++.++++ ...+
T Consensus 149 ~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G--~-G~~~~~~~~~~~~~~ 225 (384)
T 1eg5_A 149 NNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--V-GITYIRKGVPIRPLI 225 (384)
T ss_dssp CTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT--C-EEEEECTTSCCCCSB
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc--e-EEEEEcCCCcccccc
Confidence 999999999999999999999 9999999984 11122223478999999999988766 4 999888775 2111
Q ss_pred HHhhhhhhhccCCCCCHH---HHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 147 MDLHQGALMLLGPTMNPK---VAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
..... .......+.... .+..++.. ...++...+++.++++++.+.|++.+.++..|..
T Consensus 226 ~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------- 288 (384)
T 1eg5_A 226 HGGGQ-ERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLE---------------- 288 (384)
T ss_dssp CSSCT-TTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTT----------------
T ss_pred ccCcc-cccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcc----------------
Confidence 11000 000112223322 22222322 1345567777899999999999986655543320
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
.+.+.+++|.+++. +...+.+.+.. .|+ .+..|..+... +.. ........|.+ ++++|+|++
T Consensus 289 ~~~~~~~~~~~~~~-~~~~~~~~l~~---~gi-~v~~g~~~~~~--~~~------~~~~~~~~g~~~~~~~~~iRi~~~- 354 (384)
T 1eg5_A 289 ISLPNTLSVSFPNI-RGSTLQNLLSG---YGI-YVSTSSACTSK--DER------LRHVLDAMGVDRRIAQGAIRISLC- 354 (384)
T ss_dssp SBCTTEEEEECTTC-CHHHHHHHHHH---TTE-ECBC--------------------CHHHHTTCCHHHHHHEEEEECC-
T ss_pred cCCCCEEEEEeCCC-CHHHHHHHHhh---CCe-EEeccccccCC--CCc------chHHHHHcCCChhhcCCeEEEECC-
Confidence 01345788888632 34566666653 343 32333211100 000 00011122332 378999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
...++++++.+.++|+.+
T Consensus 355 ~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 355 KYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 765566565555555444
No 113
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.93 E-value=1.7e-25 Score=201.39 Aligned_cols=217 Identities=11% Similarity=0.104 Sum_probs=146.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee-EEEecCCCHHHHHHhhhc-CCceEEEEecCCCCcccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~ 79 (324)
+|+..++ .++++||+|+++.|+|+++...++ ..|.+ +..++.++-+.+...+.+ +++++|++++|+||||.+
T Consensus 106 ~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~ 179 (400)
T 3asa_A 106 VDLFRLL-SFFGPNQTVAIQDPSYPAYLDIAR-----LTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTV 179 (400)
T ss_dssp HHHHHHH-HHHCSSCEEEEEESCCHHHHHHHH-----HTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCC
T ss_pred HHHHHHH-HHcCCCCEEEECCCCcHHHHHHHH-----HcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCc
Confidence 4566654 456899999999999999988774 25766 777765411111111211 578999999999999999
Q ss_pred cC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC----CCcEEEeCCccccccCCCeeEEEEEcChhH----
Q 020548 80 AN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANL---- 142 (324)
Q Consensus 80 ~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~---- 142 (324)
.+ +++|+++|+++|+++|+||+|+++... ...+ +.+++++|+||++|++|.|+ ||+++++++
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri-G~~~~~~~~~~~~ 258 (400)
T 3asa_A 180 LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL-GWTVIPQELTYAD 258 (400)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC-EEEECCTTCBCTT
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe-eEEeeChhhccch
Confidence 86 567889999999999999999655321 1122 24699999999999899997 999999887
Q ss_pred ---HHHHHHhhhhhhhcc-CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 143 ---VNSMMDLHQGALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 143 ---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++.+..... ....+ .+.+.+.++..++... +++...+++.++++.+.+.|++.+.++..|.
T Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------- 323 (400)
T 3asa_A 259 GHFVIQDWERFL-STTFNGASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLATGFEVFGGE------------- 323 (400)
T ss_dssp SCBHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------
T ss_pred hhhHHHHHHHHh-ccCccCCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------
Confidence 666543222 11122 2333333333333322 4556667788999999999999876655333
Q ss_pred hccCCCcceEEEEE-eCCHHHHHHHHHHh
Q 020548 219 ANKEYGFGGLLCLD-METEEKANRLMNYL 246 (324)
Q Consensus 219 ~~~~~~~g~~~~~~-l~~~~~~~~~~~~l 246 (324)
.|.++|+. ++...+...+.+.+
T Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~~l 346 (400)
T 3asa_A 324 ------HAPYLWVKPTQANISDRDLFDFF 346 (400)
T ss_dssp ------SSSEEEEECCCTTCCTTTHHHHH
T ss_pred ------CceEEEEeccCCCCCHHHHHHHH
Confidence 46789999 76322223344443
No 114
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.93 E-value=1.6e-24 Score=194.37 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=153.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+++. .. ..... .|.++..++. .|++++++++ ++ ++++|++++|+||
T Consensus 81 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~np 156 (393)
T 2huf_A 81 GGMEATLCNLLEDGDVILIGHTGHWGDR-SA-DMATR-YGADVRVVKSKVGQSLSLDEIRDAL-LIHKPSVLFLTQGDSS 156 (393)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHH-HH-HHHHH-TTCEEEEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETT
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcchHH-HH-HHHHH-cCCeeEEEeCCCCCCCCHHHHHHHH-hccCCcEEEEEccCCC
Confidence 4788888888999999999999998853 11 11122 6788878774 3899999999 65 8999999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHHHHHHHhh--
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLH-- 150 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~~l~~~~-- 150 (324)
||.+.|+++|.++|+++|+++|+|++++.. ..+....++|++++|+||+++ ++| .|+++.++++++.+....
T Consensus 157 tG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G---~G~~~~~~~~~~~~~~~~~~ 233 (393)
T 2huf_A 157 TGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPG---ITPVSFSHRAVERYKRRNTK 233 (393)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSS---CEEEEECHHHHHHHHTCSSC
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCC---eEEEEECHHHHHHHhhcCCC
Confidence 999999999999999999999999998321 122223478999999999865 444 389999999888886541
Q ss_pred -hhhh----------------hccCCCCCHHHHHH---HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 151 -QGAL----------------MLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 151 -~~~~----------------~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
.++. ....+++....... ++... ..++...+++.++++++.+.|++.+.++..|.-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-- 311 (393)
T 2huf_A 234 VKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPK-- 311 (393)
T ss_dssp CSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG--
T ss_pred CceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcc--
Confidence 1000 01112223222221 22222 125566777889999999999988665543320
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
...+.++++.++...+..++.+.+.
T Consensus 312 --------------~~~~~~~~~~~~~~~~~~~~~~~L~ 336 (393)
T 2huf_A 312 --------------DRLSTVTTIKVPQGVDWLKAAQYAM 336 (393)
T ss_dssp --------------GBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred --------------ccCCcEEEEEcCCCCCHHHHHHHHH
Confidence 0124588898863223456666654
No 115
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.93 E-value=6.3e-25 Score=193.04 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=152.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..+++++ ||+|+++ |+|+++...++ ..|.++..++.+ |++++ +++++|++++|+|||
T Consensus 87 ~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l------~~~~~v~l~~p~npt 151 (335)
T 1uu1_A 87 EIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-----AVGAKFLEVPLTKDLRIPEVNV------GEGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHHHHHHS---SEEEECS-SSCHHHHHHHH-----HHTCEEEECCCCTTSCCCCCCC------CTTEEEEEESSCTTT
T ss_pred HHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-----HcCCeEEEeccCCCCCCCHHHc------CCCCEEEEeCCCCCC
Confidence 5777888876 8999999 99999988774 267888777653 33333 478999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCC-Ccc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.++++..| ++|+||+|+.+.. ... ..+.+++++|+||++|++|.|+ ||+++++++++.+.....
T Consensus 152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~ 229 (335)
T 1uu1_A 152 GHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRV-GYVVASEKFIDAYNRVRL 229 (335)
T ss_dssp CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCe-EEEEeCHHHHHHHHHhcC
Confidence 99999999999999889 9999999954422 111 2367899999999998889997 999999999988877654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
. +..+.+.+.++..++....+++...+++.++++++.+.|++.+..+. |. .|+++++
T Consensus 230 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~~~~ 286 (335)
T 1uu1_A 230 P---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRIT-DS-------------------RGNFVFV 286 (335)
T ss_dssp T---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC-------------------CSSEEEE
T ss_pred C---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEc-CC-------------------CCeEEEE
Confidence 1 22233333333334444334566677788999999999998765432 43 4668899
Q ss_pred EeCCHHHHHHHHHHhhc
Q 020548 232 DMETEEKANRLMNYLQN 248 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~ 248 (324)
.++. .+...+.+.+..
T Consensus 287 ~~~~-~~~~~~~~~l~~ 302 (335)
T 1uu1_A 287 FMEK-EEKERLLEHLRT 302 (335)
T ss_dssp ECCT-HHHHHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHHH
Confidence 9875 445667777663
No 116
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.93 E-value=1.1e-24 Score=193.36 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=175.4
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchh-HHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGG-THALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~-~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|++.+ ++|+. +...+. . .|.++..++. .|++++++++.+. ++++|++++++
T Consensus 67 ~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (366)
T 1m32_A 67 YAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG----L-MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSE 141 (366)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH----H-HTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH----H-hCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEeccc
Confidence 578889999999999988776 55554 333332 2 5777777765 3899999999443 68999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++|+|++|+... .+....++|++++|+||+++++ ..+ |+++.++++++.+.....
T Consensus 142 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~-~g~-G~~~~~~~~~~~~~~~~~ 219 (366)
T 1m32_A 142 TTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGV-PGF-AFVIAREQKLAACKGHSR 219 (366)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCC-SSE-EEEEEEHHHHTTCTTCCS
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCC-Cce-EEEEECHHHHHhhcCCCC
Confidence 999999999999999999999999999984322 2222346899999999988553 334 999999887766543210
Q ss_pred h-----------h-h--hccCCCCCHHHHH---HHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 152 G-----------A-L--MLLGPTMNPKVAF---ELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 152 ~-----------~-~--~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
. . . .....++...... ..+..... ++...+++.++++++.+.|++.+.++..|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----- 294 (366)
T 1m32_A 220 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDE----- 294 (366)
T ss_dssp CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-----
T ss_pred CccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCch-----
Confidence 0 0 0 0001233332222 12222211 3456677789999999999988655443310
Q ss_pred hHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 212 HELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
...+.++++.+++ ..+...+.+.+.. .|+ .+..| .. ..+
T Consensus 295 -----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~~----------~~--------------~~~ 335 (366)
T 1m32_A 295 -----------LHSPIITAFYSPEDPQYRFSEFYRRLKE---QGF-VIYPG----------KV--------------SQS 335 (366)
T ss_dssp -----------GBCSSEEEEECCCCTTCCHHHHHHHHHH---TTE-ECEEC----------CC--------------SSS
T ss_pred -----------hcCceEEEEEcCccCCCCHHHHHHHHHH---CCE-EEECC----------cC--------------CCC
Confidence 0135589999873 3345667777664 233 11111 10 024
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+++|+|++ ..+++++++.+.++|+++-
T Consensus 336 ~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 336 DCFRIGNI-GEVYAADITALLTAIRTAM 362 (366)
T ss_dssp CEEEEECC-SSCCHHHHHHHHHHHHHHC
T ss_pred CEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 78999999 8877888888888887664
No 117
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.93 E-value=3.2e-25 Score=199.01 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=130.9
Q ss_pred chHHHHHHHccCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+|+..++++++++|| +|++++|+|+++...++ ..|.++..++.+ .+.++ .+++++|++++||||||
T Consensus 102 ~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~d-~~~l~----~~~~k~v~l~~p~NPtG 171 (391)
T 3bwn_A 102 QLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-----YVRSGMYKWEGD-AWGFD----KKGPYIELVTSPNNPDG 171 (391)
T ss_dssp HHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-----TTCBTTEEEEEE-STTCC----CCSCEEEEEESSCTTTC
T ss_pred HHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-----HcCCeEEEecCC-HHHcC----CCCCEEEEECCCCCCCc
Confidence 578889999999999 99999999999998884 256666555542 22222 35789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCCcCCCCcc--CCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhh
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 154 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~ 154 (324)
.+.+ +|++.++.+++++|+|++|..-...+. ..+.+++++|+||.|+++|+|+ ||++. ++++++.+...... .
T Consensus 172 ~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~l~~~l~~~~~~-~ 247 (391)
T 3bwn_A 172 TIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRI-GWALVKDKEVAKKMVEYIIV-N 247 (391)
T ss_dssp CCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCGGGCE-EEEEECCHHHHHHHHHHHHH-H
T ss_pred hhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCCccce-EEEEecCHHHHHHHHHHhcc-c
Confidence 9986 454422333499999999952111222 2368899999999999999997 99986 88999888876651 1
Q ss_pred hccCCCCCHHHHHHHhcC-----------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 155 MLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
..+.+.+.+.++..++.. ..++....+.+.++++.+.+.|++.+
T Consensus 248 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 302 (391)
T 3bwn_A 248 SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESD 302 (391)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233344444444444432 23455666778999999999999874
No 118
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.93 E-value=1.4e-24 Score=191.79 Aligned_cols=260 Identities=13% Similarity=0.053 Sum_probs=172.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|++++|+|+++. .. ..... .|.++..++.+ |++++++ +++++|++++++|||
T Consensus 62 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~npt 134 (352)
T 1iug_A 62 LAMEALVKNLFAPGERVLVPVYGKFSER-FY-EIALE-AGLVVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETST 134 (352)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHH-TTCEEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTT
T ss_pred HHHHHHHHhccCCCCeEEEEeCCchhHH-HH-HHHHH-cCCceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCc
Confidence 5788888888999999999999999975 22 11112 67888887753 5555543 578999999999999
Q ss_pred ccccChHHHHHHHHhc--CCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH-------
Q 020548 77 LAVANIPELSRLAHDK--GVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS------- 145 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~--~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~------- 145 (324)
|.+.|+++|.++|+++ |+++|+|++|+. ...+....+.|++++|+||+++++. .+ |+++.++++++.
T Consensus 135 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~-g~-G~~~~~~~~~~~~~~~~~~ 212 (352)
T 1iug_A 135 GALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPP-GL-GFVALSPRALERLKPRGYY 212 (352)
T ss_dssp TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCS-CE-EEEEECHHHHHTCCCCSST
T ss_pred ceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCC-ce-eEEEECHHHHHHhhCCCce
Confidence 9999999999999999 999999999842 1122223478999999999665542 34 999888887654
Q ss_pred --HHHhhhhh-hhccCCCCCHHHH---HHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 146 --MMDLHQGA-LMLLGPTMNPKVA---FELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 146 --l~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
+....... .....+++..... ..++... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------- 279 (352)
T 1iug_A 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKR------------- 279 (352)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSS-------------
T ss_pred eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccc-------------
Confidence 22111000 0112223332221 1222221 22566777789999999999998866554332
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
..++++++.+++..+...+.+.+.. .|+ .+..|. . ...++++|+|++
T Consensus 280 -----~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~~~----------~-------------~~~~~~iRi~~~- 326 (352)
T 1iug_A 280 -----FSPAVAAFYLPEGVPYARVKEAFAQ---RGA-VIAGGQ----------G-------------PLKGKVFRLSLM- 326 (352)
T ss_dssp -----BCTTCEEEECCTTCCHHHHHHHHHT---TTE-ECEECC----------G-------------GGTTTEEEECCC-
T ss_pred -----cCCeEEEEEcCCCCCHHHHHHHHHH---CCE-EEEeCC----------C-------------ccCCCEEEEEcc-
Confidence 1466899998733345667777764 233 222221 0 012478999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
..+++++++.+.++|+++
T Consensus 327 ~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 327 GAYDRYEALGVAGMFREV 344 (352)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 776667677777666654
No 119
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.93 E-value=9.8e-25 Score=198.41 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=146.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccc---------eeEEEecCCCHHHHHHhhh-cCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---------ITTTFVDISDHEMVNSAIV-QGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~l~-~~~~~~v~~~~ 71 (324)
+++.. +.+++++||+|+++.|+|+++...++.... .+ .++.+++.++.+.+...+. .+++++|++++
T Consensus 130 ~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~ 206 (432)
T 3ei9_A 130 CDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQ--TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCS 206 (432)
T ss_dssp HHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTC--SCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEES
T ss_pred HHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCC--cccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeC
Confidence 35655 467789999999999999999888753321 11 2445554432111111121 35789999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.+ +++|+++|+++|+++|+||+|+.+... ... .+.+++++|+||.||++|.|+ ||++++
T Consensus 207 p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~-G~~~~~ 285 (432)
T 3ei9_A 207 PNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL-GWTVIP 285 (432)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC-EEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce-EEEEEC
Confidence 9999999975 667777899999999999999665322 111 146799999999999899997 999998
Q ss_pred hhH--------HHHHHHhhhhhhhccCCC-CCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 140 ANL--------VNSMMDLHQGALMLLGPT-MNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 140 ~~~--------~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
+++ .+.+...... ...+.+ +.+.++..++.. ..++....+++.++++.+.+.|++.+..+..|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 360 (432)
T 3ei9_A 286 KKLLYSDGFPVAKDFNRIICT--CFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK--- 360 (432)
T ss_dssp TTCBCTTSCBHHHHHHHHHHH--SCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECS---
T ss_pred hHHhhcchHHHHHHHHHHhcc--ccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCC---
Confidence 887 6777655431 122222 222222222221 233556677789999999999999877655443
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
.|.++|+.+++ .....+.+.+
T Consensus 361 ----------------~~~~~~~~~~~-~~~~~~~~~l 381 (432)
T 3ei9_A 361 ----------------NAPYVWVHFPN-QSSWDVFAEI 381 (432)
T ss_dssp ----------------SSSEEEEECTT-SCHHHHHHHH
T ss_pred ----------------cceEEEEECCC-CCHHHHHHHH
Confidence 46789999973 2233444443
No 120
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.93 E-value=1.4e-24 Score=193.75 Aligned_cols=276 Identities=11% Similarity=0.097 Sum_probs=175.7
Q ss_pred chHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++++++ ++||+|++++++|+++...+.... + .|.++..++.+ |++++++++ ++++++|++++|
T Consensus 71 ~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~-~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 147 (382)
T 4hvk_A 71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQ-K-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHA 147 (382)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHH-H-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSB
T ss_pred HHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHH-h-cCCEEEEeccCCCCCcCHHHHHHHh-ccCceEEEEECC
Confidence 47788888887 899999999999999988774332 2 58888888765 899999999 789999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCc-C-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+ +|+|++|+. . ..+....++|++++|+||++|++| .|+++.+++. .+.+..
T Consensus 148 ~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~ 221 (382)
T 4hvk_A 148 NNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG---VGALWIRKEA--KLQPVI 221 (382)
T ss_dssp CTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT---CEEEEEETTC--CCCCSS
T ss_pred CCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc---eEEEEEcCcc--CcCccc
Confidence 9999999999999999999999 999999832 2 222233478999999999887665 3777665543 111111
Q ss_pred hh---hhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccC
Q 020548 151 QG---ALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+ ......+++.......+...+ ..++...+++.++++++.+.|++.+. .+..|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 285 (382)
T 4hvk_A 222 LGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPE---------------- 285 (382)
T ss_dssp CSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS----------------
T ss_pred ccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc----------------
Confidence 10 001112333332222221111 23456667778899999999987743 4443320
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
...+++++|.+++ .+...+.+.+.. .|+ .++.|..+..... ........++.. ++++|+|++
T Consensus 286 ~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iRl~~~- 351 (382)
T 4hvk_A 286 KRLPNNVNVRFSY-IEGESIVLSLDM---AGI-QASTGSACSSKTL--------QPSHVLMACGLKHEEAHGTLLLTLG- 351 (382)
T ss_dssp SBCTTEEEEEETT-CCHHHHHHHHHH---TTC-BCBCC----------------CCCHHHHHTTCCHHHHHTEEEEECC-
T ss_pred ccCCCEEEEEECC-CCHHHHHHHHHH---CCE-EEeeCCccCCCCC--------cchHHHHHcCCChhhcCCeEEEEcC-
Confidence 0134588888863 234556666654 343 4444433221100 000111223332 589999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
..+++++++.+.++|+.+
T Consensus 352 ~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 352 RYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 776666655555555443
No 121
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.93 E-value=1.2e-24 Score=194.07 Aligned_cols=265 Identities=12% Similarity=0.094 Sum_probs=176.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|++++|.|.+.... ..... .|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 82 ~al~~~~~~~~~~gd~vi~~~~~~~~~~~~--~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~npt 157 (376)
T 3f0h_A 82 GSMEAVVMNCFTKKDKVLVIDGGSFGHRFV--QLCEI-HEIPYVALKLEHGKKLTKEKLYEYD-NQNFTGLLVNVDETST 157 (376)
T ss_dssp HHHHHHHHHHCCTTCCEEEEESSHHHHHHH--HHHHH-TTCCEEEEECCTTCCCCHHHHHTTT-TSCCCEEEEESEETTT
T ss_pred HHHHHHHHhccCCCCeEEEEeCChhhHHHH--HHHHH-cCCceEEEeCCCCCCCCHHHHHHhh-ccCceEEEEecccCCc
Confidence 578888999999999999999987764422 11112 57777766543 899999988 7899999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
|.+.|+++|+++|+++|+++|+|++++.... +....++|+++.|+||+++ ++| .|+++.++++.+.+.......
T Consensus 158 G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G---~g~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3f0h_A 158 AVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPG---ISVIVLAPRGVERVEKSKVRT 234 (376)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSS---CEEEEECHHHHHHHHTCCCCC
T ss_pred ceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCc---eEEEEECHHHHHHhhcCCCCc
Confidence 9999999999999999999999999844322 2223478999999999998 444 388999999888876422100
Q ss_pred -----------h--hccCCCCCHHH---HHHHhcCc--c-cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 154 -----------L--MLLGPTMNPKV---AFELSERI--P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 154 -----------~--~~~~~~~~~~~---~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
. .....++.... +...+..+ . .++...+++.++++++.+.|++.+..+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------- 305 (376)
T 3f0h_A 235 MYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSES--------- 305 (376)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSS---------
T ss_pred eeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccc---------
Confidence 0 01122333311 11122111 1 2456667778889999999988765443222
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
....++.+..++ .+...+.+.+.. +.|+ .+..| .. ...++++|+
T Consensus 306 ---------~~~~~~~~~~~~-~~~~~l~~~l~~--~~gi-~v~~g----------~~-------------~~~~~~lRi 349 (376)
T 3f0h_A 306 ---------PANGVTSVHPTT-ANAYDIFLKLKD--EYGI-WICPN----------GG-------------EMKDTIFRV 349 (376)
T ss_dssp ---------BBTTEEEEEESS-SCHHHHHHHHHH--HSSE-ECEEC----------CG-------------GGTTTCEEE
T ss_pred ---------cCceEEEEeCCC-CCHHHHHHHHHH--hCCE-EEecC----------cc-------------ccCCCEEEE
Confidence 123355555432 234556666653 1233 22212 00 012478999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
|++ ...++++++.+.++|+++-++
T Consensus 350 s~~-~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 350 GHI-GALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp ECC-SSCCHHHHHHHHHHHHHHHHT
T ss_pred ecC-CCCCHHHHHHHHHHHHHHHHh
Confidence 999 777777788888777766443
No 122
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.93 E-value=2.1e-24 Score=197.06 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=136.7
Q ss_pred chHHH--HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C-----CHHHHHHhhhc--CCceEEEE
Q 020548 2 SAISS--VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAIVQ--GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~--~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~-----d~~~l~~~l~~--~~~~~v~~ 69 (324)
+|+.. .+.+++.+||+|++++|+|+++...++.++. ..|.++..++. + |++++++++.+ ++++++++
T Consensus 130 ~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~ 208 (448)
T 3meb_A 130 GSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFN-KLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFH 208 (448)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHC-TTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHH-hCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 35555 4456688999999999999999988852221 25777666654 2 89999999843 46788889
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------------CCCCcEEEeCCccccccCCCeeEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------------~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|+++..... ....++++.|+||.|+++|.|+ |
T Consensus 209 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G 287 (448)
T 3meb_A 209 ACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI-G 287 (448)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC-E
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccc-e
Confidence 999999999976 55699999999999999999977654321 1245688999999999999997 9
Q ss_pred EE--Ec---------Ch----hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHH
Q 020548 135 AV--CG---------PA----NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFAR 192 (324)
Q Consensus 135 ~i--~~---------~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~ 192 (324)
|+ +. ++ ++.+.+..... ......+.+.+..+..++... ..++...+++.++++.+.+
T Consensus 288 ~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~ 366 (448)
T 3meb_A 288 CLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR-KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHA 366 (448)
T ss_dssp EEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeccccccccCCHHHHHHHHHHHHHHHh-cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 65 44 45555554333 111122223333333344332 2245566778899999999
Q ss_pred HHHhCC
Q 020548 193 RMKKLG 198 (324)
Q Consensus 193 ~L~~~~ 198 (324)
.|++.+
T Consensus 367 ~L~~~~ 372 (448)
T 3meb_A 367 SLAKRK 372 (448)
T ss_dssp HHHHTT
T ss_pred HHHhhC
Confidence 999874
No 123
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.92 E-value=3.7e-24 Score=191.16 Aligned_cols=274 Identities=12% Similarity=0.099 Sum_probs=173.2
Q ss_pred chHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++. ++||+|++++|+|+++...+..+ .. .|.++..++.+ |++++++++ ++++++|+++++
T Consensus 71 ~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 147 (382)
T 4eb5_A 71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHA 147 (382)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-TT-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSB
T ss_pred HHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHH-Hh-CCcEEEEeccCCCCccCHHHHHHHh-cCCCeEEEEecc
Confidence 47788888887 89999999999999988777432 23 68888888763 899999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|++ |+|++|+... .+....++|++++|+||++|++| + |+++.+++. .+.+..
T Consensus 148 ~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~--~l~~~~ 221 (382)
T 4eb5_A 148 NNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVI 221 (382)
T ss_dssp CTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTC--CCCCSS
T ss_pred CCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc--e-EEEEEcccc--ccCcee
Confidence 99999999999999999999999 9999984211 11122368999999999987655 3 888776653 111111
Q ss_pred hh---hhhccCCCCCHHHHH---HHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccC
Q 020548 151 QG---ALMLLGPTMNPKVAF---ELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+ ......+++...... ..+... ..++...+++.++++++.+.|++.+ .++..|.-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 285 (382)
T 4eb5_A 222 LGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPE---------------- 285 (382)
T ss_dssp CSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS----------------
T ss_pred cCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcc----------------
Confidence 10 001122223322211 122111 2245566777889999999998873 34432220
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
...+++++|.+++ .+...+.+.+.. .|+ .+..|..+... .+ ........+|.+ ++++|+|++
T Consensus 286 ~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~~~~~------~~--~~~~~~~~~g~~~~~~~~~iRi~~~- 351 (382)
T 4eb5_A 286 KRLPNNVNVRFSY-IEGESIVLSLDM---AGI-QASTGSACSSK------TL--QPSHVLMACGLKHEEAHGTLLLTLG- 351 (382)
T ss_dssp SBCTTEEEEEETT-SCHHHHHHHHHH---HTC-BCBCCCGGGTS------SC--CCCHHHHHTTCCHHHHTTEEEEECC-
T ss_pred cCCCCEEEEEeCC-cCHHHHHHHHHH---CCE-EEeccccccCC------CC--cccHHHHHcCCChhccCCeEEEECC-
Confidence 0135688898873 234566666653 343 33434322110 00 011112223432 579999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 020548 299 LGTLDQRWSQFEKALS 314 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~ 314 (324)
...+++.++.+.++|+
T Consensus 352 ~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 352 RYNTDEDVDRLLEVLP 367 (382)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7655555554444443
No 124
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.92 E-value=5.3e-24 Score=191.31 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=138.2
Q ss_pred chHHHHH--HHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----C---CHHHHHHhhhc--CCceEEEEe
Q 020548 2 SAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~--~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~l~~--~~~~~v~~~ 70 (324)
+|+..++ .+++++||+|+++.|+|+++...++ ..|.++..++. . |++++++++++ +++++++++
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~ 180 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHP 180 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHH-----HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECS
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHH-----HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeC
Confidence 4667774 4567899999999999999988874 26778888776 2 89999999932 578899999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----------cCCCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----------~~~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+.+.... ...+.+++++|+||.++++|.|+ ||+
T Consensus 181 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ri-G~~ 259 (397)
T 3fsl_A 181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGL 259 (397)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCC-EEE
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCe-eEE
Confidence 99999999965 5689999999999999999997765431 12367899999999999899997 999
Q ss_pred Ec---ChhHHHHHHHhhhhh---hhccCCCCCHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 137 CG---PANLVNSMMDLHQGA---LMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 137 ~~---~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+. ++++++.+....... .....+.+.+..+..++.. ..++....+++.++++.+.+.|++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 334 (397)
T 3fsl_A 260 SVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 63 456665443221101 0112223333333333433 23345666778999999999999873
No 125
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.92 E-value=1.8e-24 Score=191.73 Aligned_cols=258 Identities=8% Similarity=0.031 Sum_probs=174.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH-HHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT-HALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~-~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++ +.+++..+.|... ...+ .. .|.++..++.+ |+++++ + ++++++|++++|+||
T Consensus 72 ~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~----~~-~g~~~~~v~~~~~~~~d~~~l~--~-~~~~~~v~~~~~~np 142 (362)
T 3ffr_A 72 EIWERIIQNCVEK-KSFHCVNGSFSKRFYEFA----GE-LGREAYKEEAAFGKGFYPADIT--V-PADAEIICLTHNETS 142 (362)
T ss_dssp HHHHHHHHHHCSS-EEEEEECSHHHHHHHHHH----HH-TTCEEEEEECCTTCCCCGGGCC--C-CTTCCEEEEESEETT
T ss_pred HHHHHHHHhccCC-cEEEEcCcHHHHHHHHHH----HH-hCCCeEEEecCCCCCCCHHHHh--c-cCCccEEEEEcCCCC
Confidence 5788899998888 5555555555522 1222 13 68888887654 778887 5 789999999999999
Q ss_pred cccccChHHHHHHHHhc-CCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccc-cCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 76 TLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSPARL-GADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
||.+.|+++|.++|+++ |+++|+|++|+.... +.+. .+|++++|+||+++ ++| .|+++.++++++.+.....+
T Consensus 143 tG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-~~~~~~~d~~~~s~~K~~~~~~G---~g~~~~~~~~~~~~~~~~~g 218 (362)
T 3ffr_A 143 SGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-KFDWTKIDSVFFSVQKCFGLPAG---LGVWILNDRVIEKSKALLAK 218 (362)
T ss_dssp TTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-CCCTTSCSEEEEETTSTTCCCSC---CEEEEEEHHHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHhCCCCEEEEecccccCCc-ccChhHCcEEEEecccccCCCCc---eEEEEECHHHHHHhhhcccc
Confidence 99999999999999999 999999999843321 2222 28999999999998 555 38888898888888765431
Q ss_pred hh-----------------hccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 153 AL-----------------MLLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 153 ~~-----------------~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
.. .....++...... .++..+ ..++...+++.++++++.+.|++. +.++..|.
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 294 (362)
T 3ffr_A 219 RKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVED---- 294 (362)
T ss_dssp TCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSC----
T ss_pred CCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCC----
Confidence 00 0002222322211 122211 125667777899999999999998 44554322
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
.....+.++++.+++ +..++.+.+.. .|+ .+..| .. ...+
T Consensus 295 -----------~~~~~~~~~~~~~~~--~~~~~~~~l~~---~gi-~~~~g----------~~-------------~~~~ 334 (362)
T 3ffr_A 295 -----------AKLRSMTTIVANTTM--LPGEINKILEP---FDM-AVGAG----------YG-------------SKKE 334 (362)
T ss_dssp -----------GGGBCSSEEEEEESS--CHHHHHHHHGG---GTE-EEEEC----------SG-------------GGTT
T ss_pred -----------hhhcCCceEEEecCC--CHHHHHHHHHH---CCe-EEecC----------cc-------------ccCC
Confidence 001246688999976 56677777774 243 21211 10 1125
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+++|+|++ ..+++++++.+.++|+++.
T Consensus 335 ~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 335 TQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 78999999 8888888999998887653
No 126
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=1.7e-24 Score=191.03 Aligned_cols=254 Identities=17% Similarity=0.135 Sum_probs=164.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHH---HHhhhcCcccceeEEEecC----CCHHHHHHhhhcC------CceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHA---LLTHFFPRACNITTTFVDI----SDHEMVNSAIVQG------RTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~---~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~------~~~~v~ 68 (324)
+|+..++.++++|||+|++++|+|.+... .+ ...|.++.+++. .|++++++++ ++ ++++|+
T Consensus 64 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~~g~~~~~v~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 64 MGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMA-----VLSGVMPHPVPGKNGAMDPDDVRKAI-RPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHH-----HHTCCEEEEECEETTEECHHHHHHHS-CCSCTTSCCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCcchhhhccccchh-----hccCeEEEEecCCCCccCHHHHHHHh-ccccccccCceEEE
Confidence 35677788889999999999999976542 22 125777776621 2899999998 43 699999
Q ss_pred EecCCCCc-ccccC---hHHHHHHHHhcCCEEEEcCCCCc--C---CCCccC--CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 69 FESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP--L---VLSPAR--LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 69 ~~~~~npt-G~~~~---~~~i~~l~~~~~~~~ivD~~~~~--~---~~~~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+++|+||| |.+.| +++|+++|+++|+++++|++|.. + ..++.. .+.|.++.|+||+++++ +||+++
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~ 214 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVV 214 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEE
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC---ceEEEE
Confidence 99999999 99876 56889999999999999998621 1 112221 25788888999999765 345778
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++++.+....... ..+.......+......++.....+++..++++++.+.|++.+..+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------------ 280 (347)
T 1jg8_A 215 GDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPED------------ 280 (347)
T ss_dssp ECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGG------------
T ss_pred cCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCC------------
Confidence 8988888887665421 11112222222221111111112233445677888888887755432111
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
..++++++.++. ..+..++.+.+.. .|+ .+. +. + .+++|+|+
T Consensus 281 ------~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~----------~~---------------~--~~~iRl~~ 323 (347)
T 1jg8_A 281 ------VKTNMVILRTDNLKVNAHGFIEALRN---SGV-LAN----------AV---------------S--DTEIRLVT 323 (347)
T ss_dssp ------CCSSEEEEECTTSSSCHHHHHHHHHH---HTE-ECE----------EE---------------E--TTEEEEEC
T ss_pred ------CcceEEEEEcccccCCHHHHHHHHHH---CCC-EEe----------cC---------------C--CCeEEEEe
Confidence 146688999863 2345667777753 333 111 10 1 36799999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 020548 297 GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ...++++++.+.++|+++
T Consensus 324 ~-~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 324 H-KDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp C-TTSCHHHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHH
Confidence 8 766777777777666654
No 127
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.92 E-value=2.1e-24 Score=194.12 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=166.9
Q ss_pred chHHHHHHHcc----CCCC-EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC----SSGG-HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd-~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++++++ ++|| +|+++.++|+++...+..+. . .|.++..++.+ |++++++++ ++++++|++++
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~-~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~ 167 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLA-G-RGFEVDFLTPGPSGRISVEGVMERL-RPDTLLVSLMH 167 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHH-T-TTCEEEEECCCTTCCCCHHHHHTTC-CTTEEEEECCS
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHH-h-cCCeEEEEccCCCCCcCHHHHHHhc-CCCceEEEEEC
Confidence 57888888887 8999 99999999999888775442 3 68899888875 899999999 78999999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEE-cCh-hHH---H
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVC-GPA-NLV---N 144 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~-~~~---~ 144 (324)
|+||||.+.|+++|.++|+++|+++|+|++|+... .+.... +|++++|+||++|++| + |+++ .++ ++. .
T Consensus 168 ~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~ 243 (400)
T 3vax_A 168 VNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERV 243 (400)
T ss_dssp BCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBC
T ss_pred CCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhcccccc
Confidence 99999999999999999999999999999984221 222233 8999999999776554 3 6666 554 111 1
Q ss_pred HHHHhhhh---hhhccCCCCCHHHHHHH---hcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 145 SMMDLHQG---ALMLLGPTMNPKVAFEL---SER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 145 ~l~~~~~~---~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
.+.+...+ ......+++.......+ +.. ...++...+++.++++++.+.|+..+..+..|.-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------- 312 (400)
T 3vax_A 244 PLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQD----------- 312 (400)
T ss_dssp CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTT-----------
T ss_pred ccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcc-----------
Confidence 11111100 00122233333222221 111 1235666777888999999999822345443330
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVR 293 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR 293 (324)
...++++++.+++ .+...+.+.+. . | +.++.|..+...... .+.....+|.+ ++++|
T Consensus 313 -----~~~~~~~~~~~~~-~~~~~l~~~L~-~---g-i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iR 373 (400)
T 3vax_A 313 -----HVVPHILNLSFED-VDAEAFLVTLK-D---L-VAVATGSASTSASFT--------PSHVLRAMGLPEEAASKSLR 373 (400)
T ss_dssp -----SBCTTEEEEECTT-CCHHHHHHHHH-H---H-HHHTTTTEEEEEEEC--------CHHHHHTTTCCHHHHTSEEE
T ss_pred -----cCCCCEEEEEeCC-CCHHHHHHHHh-c---C-cEEEecccccCCCCC--------ccHHHHHcCCCccccCceEE
Confidence 0135688888873 23445555554 2 2 244555433221100 11122233443 48999
Q ss_pred EEe-ccCCCHHHHHHHHHHHHHhhh
Q 020548 294 MSV-GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 294 ~s~-g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|+ | ...++++++.+.++|+++-
T Consensus 374 ls~~~-~~~t~e~i~~~~~~l~~~~ 397 (400)
T 3vax_A 374 FSWTP-GQATDLDVEELARGVAKLK 397 (400)
T ss_dssp EEEEE-C------------------
T ss_pred EEccC-CCCCHHHHHHHHHHHHHHh
Confidence 999 8 7777777777777776553
No 128
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.87 E-value=4.8e-27 Score=210.97 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=155.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++.++++++|++++|
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~ 173 (392)
T 3b1d_A 99 VPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-----LNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNP 173 (392)
Confidence 357888888889999999999999999987763 25666666554 36788888883368899999999
Q ss_pred CCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc----C--CCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 73 SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----R--LGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 73 ~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~----~--~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+||||.+.+ +++|+++|+++|+++|+||+|+.+... +. . .+.++++.|+||+++++|.|+ ||+++
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~ 252 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN-SYAII 252 (392)
Confidence 999999975 889999999999999999999665421 11 1 356799999999999889997 99988
Q ss_pred Ch-hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHH
Q 020548 139 PA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 139 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~ 214 (324)
++ ++++.+............+.+.+.++..++.. ..++....+++.++++.+.+.|++ . +..+..|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------- 323 (392)
T 3b1d_A 253 ENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ--------- 323 (392)
Confidence 64 58888876655211112233444333333332 233455566678888889888887 4 33333222
Q ss_pred HHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 215 LKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
++.++|++++. ..+...+.+.+.
T Consensus 324 ----------~~~~~~i~~~~~~~~~~~l~~~l~ 347 (392)
T 3b1d_A 324 ----------GTYLIWLDFSDYGLTDDALFTLLH 347 (392)
Confidence 34455678763 134555666653
No 129
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.92 E-value=5.6e-24 Score=187.87 Aligned_cols=221 Identities=13% Similarity=0.112 Sum_probs=149.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++.++++ |+|++++++|+++ ... ..... .|.++..++. .|++++++++ ++ ++++|++++++||
T Consensus 63 ~a~~~~~~~~~~--d~vl~~~~~~~~~-~~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~np 136 (353)
T 2yrr_A 63 LGMEAGLANLDR--GPVLVLVNGAFSQ-RVA-EMAAL-HGLDPEVLDFPPGEPVDPEAVARAL-KRRRYRMVALVHGETS 136 (353)
T ss_dssp HHHHHHHHTCSC--CCEEEEECSHHHH-HHH-HHHHH-TTCCEEEEECCTTSCCCHHHHHHHH-HHSCCSEEEEESEETT
T ss_pred HHHHHHHHHhcC--CcEEEEcCCCchH-HHH-HHHHH-cCCceEEEeCCCCCCCCHHHHHHHH-HhCCCCEEEEEccCCC
Confidence 467778887766 8999999999986 211 11122 6788877775 3899999999 55 8999999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHH----
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMD---- 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~---- 148 (324)
||.+.|+++|.++|+++|+++|+|++|+... .+....+.|+++.|++|++++ +| + ||++.++++++.+..
T Consensus 137 tG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~-G~~~~~~~~~~~l~~~~~~ 213 (353)
T 2yrr_A 137 TGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPG--L-APIAASLEARKAFTGKRGW 213 (353)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSS--C-EEEEECHHHHHHCCCCSCS
T ss_pred cceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCc--e-EEEEECHHHHHHhccCCCc
Confidence 9999999999999999999999999983211 111223689999999997655 44 4 999999988876641
Q ss_pred ------hhhhh-hhccCCCCCHHHHHH---HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 149 ------LHQGA-LMLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 149 ------~~~~~-~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
..... .....+++....... .+... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------- 282 (353)
T 2yrr_A 214 YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKA----------- 282 (353)
T ss_dssp TTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSS-----------
T ss_pred cccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCc-----------
Confidence 00000 011122333322221 22211 12456677789999999999998866554322
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
...++++++.++...+..++.+.+..
T Consensus 283 ------~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (353)
T 2yrr_A 283 ------SPLPTVLVVRPPEGVDADRLVRALYA 308 (353)
T ss_dssp ------SBCTTEEEEECCTTCCHHHHHHHHHH
T ss_pred ------cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 01456778988632335567776664
No 130
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.92 E-value=8.3e-24 Score=191.07 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=136.5
Q ss_pred chHHHHHH--HccCCC-----CEEEEcCCCchhHHHHHhhhcCccccee-EEEecC---C----CHHHHHHhhhc--CCc
Q 020548 2 SAISSVLM--QLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNIT-TTFVDI---S----DHEMVNSAIVQ--GRT 64 (324)
Q Consensus 2 ~ai~~~~~--~~~~~g-----d~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~~~---~----d~~~l~~~l~~--~~~ 64 (324)
+|+..+++ .++++| |+|+++.|+|+++...++ ..|.+ +..++. + |++++++++.+ .++
T Consensus 110 ~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 184 (412)
T 1ajs_A 110 GALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-----TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFS 184 (412)
T ss_dssp HHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-----HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-----HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCc
Confidence 46666643 456799 999999999999988774 25777 766665 2 79999998843 367
Q ss_pred eEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccC-----CCCcEEEeCCccccccCC
Q 020548 65 KVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PAR-----LGADVVVHSISKFISGGA 129 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~-----~~~d~~~~S~sK~~~~~g 129 (324)
+++++++|+||||.+.+ +++|+++|+++|+++|+||+|.++... +.. .+.++++.|+||.++++|
T Consensus 185 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 264 (412)
T 1ajs_A 185 IFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN 264 (412)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC
Confidence 88889999999999965 568999999999999999999766442 111 245699999999999999
Q ss_pred CeeEEEEEc---ChhHH----HHHHHhhhhhhhcc-CCCCCHHHHHHHhcCcc-------cHHHHHHHHHHHHHHHHHHH
Q 020548 130 DIIAGAVCG---PANLV----NSMMDLHQGALMLL-GPTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 130 ~r~~G~i~~---~~~~~----~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L 194 (324)
.|+ ||+++ +++++ +.+..... . ... .+.+.+.++..++.... .++...+++.++++++.+.|
T Consensus 265 ~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 341 (412)
T 1ajs_A 265 ERV-GNLTVVAKEPDSILRVLSQMQKIVR-V-TWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341 (412)
T ss_dssp GCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cce-EEEEEecCCHHHHHHHHHHHHHHHh-c-ccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 99988 77744 43433222 1 122 23333444433444332 34556677789999999999
Q ss_pred HhCC
Q 020548 195 KKLG 198 (324)
Q Consensus 195 ~~~~ 198 (324)
++.+
T Consensus 342 ~~~~ 345 (412)
T 1ajs_A 342 EALK 345 (412)
T ss_dssp HHTT
T ss_pred HhhC
Confidence 9876
No 131
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.92 E-value=4.5e-24 Score=195.89 Aligned_cols=267 Identities=13% Similarity=0.109 Sum_probs=176.5
Q ss_pred chHHHHHHHccCCCCE---EEEcCCCchhHHHHHhhhcCcccceeE-----EEecCC-----CHHHHHHhhhc--CCceE
Q 020548 2 SAISSVLMQLCSSGGH---VVAARTLYGGTHALLTHFFPRACNITT-----TFVDIS-----DHEMVNSAIVQ--GRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~---vl~~~p~y~~~~~~~~~~~~~~~g~~~-----~~~~~~-----d~~~l~~~l~~--~~~~~ 66 (324)
++++.++.+++++||+ |+++.|+|++....+...... .|.++ ...+.+ |++++++++.+ +++++
T Consensus 139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~-~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~l 217 (465)
T 3e9k_A 139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAV 217 (465)
T ss_dssp HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHH-TTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHH-cCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEE
Confidence 4788888888876655 999999999977655433323 56553 222222 79999999942 68999
Q ss_pred EEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHH
Q 020548 67 LYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLV 143 (324)
Q Consensus 67 v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~ 143 (324)
|++++++||||.+.|+++|.++|+++|+++|+|++++.. ..+..+.++|++++|+||+++ +|+ ++ |+++.++++.
T Consensus 218 v~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~-~~-g~l~~~~~~~ 295 (465)
T 3e9k_A 218 ILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAG-GI-AGAFIHEKHA 295 (465)
T ss_dssp EEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTT-CC-CEEEECGGGT
T ss_pred EEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCC-ce-EEEEEcHHHH
Confidence 999999999999999999999999999999999998322 222234589999999999994 443 54 8888888776
Q ss_pred HHHHHhhhhh---------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhC
Q 020548 144 NSMMDLHQGA---------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 144 ~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+.+.+...++ ..+..+++.......+...+. .++...++..++++++.+.|++.
T Consensus 296 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 296 HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6554221110 001112333333322222222 14556667788899999999883
Q ss_pred -----------CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCcccee
Q 020548 198 -----------GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 198 -----------~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
+.++..|.. ...+|++++|.++. ....+.+.+.. .|+.. .
T Consensus 376 ~~~~~~~~~~~g~~~~~p~~---------------~~~~g~~~~~~~~~--~~~~l~~~L~~---~Gi~v-~-------- 426 (465)
T 3e9k_A 376 YGKDKAATKKPVVNIITPSH---------------VEERGCQLTITFSV--PNKDVFQELEK---RGVVC-D-------- 426 (465)
T ss_dssp CC---------CEEECSCSS---------------GGGBCSCEEEEECC--TTCCHHHHHHT---TTEEC-E--------
T ss_pred ccccccccCCCCeEEeCCCC---------------HhhcccEEEEEecC--CHHHHHHHHHH---CCEEE-e--------
Confidence 445554431 11357899999872 23445555553 23311 1
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhhhhcC
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQDSG 320 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~~~~~ 320 (324)
. ..++++|+|+ + ..+++++++.+.++|+++-++.
T Consensus 427 --~-----------------~~~~~iRis~~~-~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 427 --K-----------------RNPNGIRVAPVP-LYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp --E-----------------ETTTEEEEBCCT-TTCCHHHHHHHHHHHHHHHTC-
T ss_pred --c-----------------CCCCEEEEeCcc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 0 0147899999 7 7788888888888887775543
No 132
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.92 E-value=7.5e-24 Score=191.39 Aligned_cols=190 Identities=13% Similarity=0.106 Sum_probs=134.1
Q ss_pred chHHHH--HHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcC--CceEEEEe
Q 020548 2 SAISSV--LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQG--RTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~--~~~~v~~~ 70 (324)
+|+..+ +...+.+||+|+++.|+|+++...++ ..|.++..++. .|++++++++.+. .+.+++++
T Consensus 109 ~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 183 (412)
T 1yaa_A 109 GALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-----NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHS 183 (412)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-----TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEEC
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-----HcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 355655 23445799999999999999998874 26777777665 2799999998432 24455559
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------cc-C----CC---CcEEEeCCccccccCCCee
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PA-R----LG---ADVVVHSISKFISGGADII 132 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~-~----~~---~d~~~~S~sK~~~~~g~r~ 132 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++... +. . .. .+++++|+||.++++|.|+
T Consensus 184 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glri 263 (412)
T 1yaa_A 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV 263 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcc
Confidence 99999999975 667899999999999999999666432 11 1 13 5799999999999889997
Q ss_pred EEEEE--c-----Chh----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc-------cHHHHHHHHHHHHHHHHHHH
Q 020548 133 AGAVC--G-----PAN----LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 133 ~G~i~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L 194 (324)
||++ + +++ +++.+..... .....++.+.+.++..++.... +++...+++.++++.+.+.|
T Consensus 264 -G~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 341 (412)
T 1yaa_A 264 -GCFHLALTKQAQNKTIKPAVTSQLAKIIR-SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHL 341 (412)
T ss_dssp -EEEEEECCSCTTHHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEecCCCCCHHHHHHHHHHHHHHHh-hccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7 566 6666665332 1111112333333333444332 34556677788999999999
Q ss_pred HhCC
Q 020548 195 KKLG 198 (324)
Q Consensus 195 ~~~~ 198 (324)
++.+
T Consensus 342 ~~~~ 345 (412)
T 1yaa_A 342 VKLG 345 (412)
T ss_dssp HHHT
T ss_pred HhhC
Confidence 9875
No 133
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=6.8e-23 Score=183.14 Aligned_cols=264 Identities=12% Similarity=0.119 Sum_probs=170.8
Q ss_pred chHHHHHHHcc---CCCCEEEEc-CCCchhHH-HHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLC---SSGGHVVAA-RTLYGGTH-ALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~---~~gd~vl~~-~p~y~~~~-~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++++++ ++||+|++. .+.|+... ..++ . .|.++..++. .|++++++++.+.++++|+++
T Consensus 70 ~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 70 LGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR----S-YGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp HHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH----H-TTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred HHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH----H-cCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 57888888887 899999888 55666553 3332 2 6888888876 389999999933389999999
Q ss_pred cCCCCcccccChHHHHHHHHhc--CCEEEEcCCCCcC--CCCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHH-
Q 020548 71 SISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVN- 144 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~- 144 (324)
+++||||.+.|+++|.++|+++ |+++|+|++|+.. ..+....++|++++|+||++++ +| .|+++.++++++
T Consensus 145 ~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G---~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 145 HVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG---LSISLCSSRFMDY 221 (385)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC---EEEEEECHHHHHH
T ss_pred ccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCc---ceEEEEcHHHHHH
Confidence 9999999999999999999999 9999999998422 1233344789999999997764 44 399998888776
Q ss_pred HHHH---------------hh---hhhhh---ccCCCCCHHHHH---HHhcCcc--cHHHHHHHHHHHHHHHHHHH-HhC
Q 020548 145 SMMD---------------LH---QGALM---LLGPTMNPKVAF---ELSERIP--HLGLRMKEHCHRALIFARRM-KKL 197 (324)
Q Consensus 145 ~l~~---------------~~---~~~~~---~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~l~~~L-~~~ 197 (324)
.+.. .. ..... ....+....... ..+.... .++...+++.++++++.+.| ++.
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4421 10 00000 001223322221 1222211 24556677889999999999 877
Q ss_pred CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCC
Q 020548 198 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 277 (324)
Q Consensus 198 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 277 (324)
+.++..|. +.. ...++++++.+++ ...+.+.+.. .|+ .++.|.. .
T Consensus 302 g~~~~~~~-~~~-------------~~~~~~~~~~~~~---~~~~~~~l~~---~gi-~v~~g~~----------~---- 346 (385)
T 2bkw_A 302 QLTSVSRY-PSN-------------MSAHGLTAVYVAD---PPDVIAFLKS---HGV-VIAGGIH----------K---- 346 (385)
T ss_dssp CCEESSCS-SST-------------TBCSSCEEEECSC---HHHHHHHHHH---TTE-ECBCCCC----------T----
T ss_pred CceecccC-ccc-------------ccCCceEEEecCC---HHHHHHHHHH---CCe-EEeCCCC----------c----
Confidence 66554322 000 0146789999875 4566666653 333 2222211 0
Q ss_pred CHHHHHhcCCCCCeEEEE-eccC---CCHHHHHHHHHHHHHhhh
Q 020548 278 NAEEKALAGISAGLVRMS-VGYL---GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 278 ~~~~~~~~~~~~~~iR~s-~g~~---~~~~~~~~~l~~~l~~~~ 317 (324)
...++++|+| ++ . ..++++++.+.++|+++-
T Consensus 347 --------~~~~~~iRis~~~-~~~~~~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 347 --------DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp --------TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHHT
T ss_pred --------ccCCCEEEEEccc-cccccCCHHHHHHHHHHHHHHH
Confidence 1124789999 77 4 245556666666665543
No 134
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.92 E-value=5.5e-24 Score=191.15 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=134.0
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C----CHHHHHHhhhcC--CceEEEEe
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S----DHEMVNSAIVQG--RTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~--~~~~v~~~ 70 (324)
+|+..+++.+ +.+||+|+++.|+|+++...++ ..|.++..++. + |++++++++.+. ++++++++
T Consensus 105 ~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~ 179 (396)
T 2q7w_A 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-----SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179 (396)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred hhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeC
Confidence 4667776654 4699999999999999988874 26777777766 3 899999998332 47888889
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++... +.. .+.+++++|+||.++++|.|+ ||+
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~ 258 (396)
T 2q7w_A 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERV-GAC 258 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccccccc-ceE
Confidence 99999999975 568999999999999999999766442 111 146799999999999889997 999
Q ss_pred Ec---Chh----HHHHHHHhhhhhhhccC-CCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 137 CG---PAN----LVNSMMDLHQGALMLLG-PTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 137 ~~---~~~----~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+. +++ +.+.+..... . ...+ +.+.+.++..++... ..++...+++.++++.+.+.|++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 259 TLVAADSETVDRAFSQMKAAIR-A-NYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp EEECSSHHHHHHHHHHHHHHHH-T-TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCHHHHHHHHHHHHHHHh-h-ccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 85 554 4444433222 1 1222 222333333334332 2334455567889999999999876
No 135
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=6.3e-24 Score=189.41 Aligned_cols=139 Identities=20% Similarity=0.206 Sum_probs=112.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceE-EEEecCCCCcc-cc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV-LYFESISNPTL-AV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~-v~~~~~~nptG-~~ 79 (324)
+|+..++.++ +||+|+++.|+|+++...+. .... .|.++..+ .|+++++++ ++++++ |++++|+|||| ..
T Consensus 87 ~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~-~g~~~~~v--~d~~~l~~~--~~~~~~~v~~~~p~nptG~~~ 158 (374)
T 2aeu_A 87 SAILATILAL--KPKKVIHYLPELPGHPSIER-SCKI-VNAKYFES--DKVGEILNK--IDKDTLVIITGSTMDLKVIEL 158 (374)
T ss_dssp HHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHH-TTCEEEEE--SCHHHHHTT--CCTTEEEEEECBCTTSCBCCH
T ss_pred HHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHH-cCcEEEEe--CCHHHHHhc--CCCccEEEEEccCCCCCCCCc
Confidence 5778888876 99999999998877554332 1223 68888887 589999887 568999 99999999999 88
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCC----CC--ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLV----LS--PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~----~~--~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
.++++|.++|+++|+++|+|++|+.+. .. +...+.|++++|+||++++ .++ ||+++++++++.+.....
T Consensus 159 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g--~~~-G~~~~~~~~~~~l~~~~~ 233 (374)
T 2aeu_A 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG--PRG-GLLAGKKELVDKIYIEGT 233 (374)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS--CSC-EEEEEEHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC--cce-EEEEECHHHHHHHHHhhc
Confidence 899999999999999999999984432 11 3445789999999999754 574 999999999998887654
No 136
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.91 E-value=7.2e-24 Score=190.31 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=134.2
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C----CHHHHHHhhhcC--CceEEEEe
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S----DHEMVNSAIVQG--RTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~--~~~~v~~~ 70 (324)
+|+..+++.+.. +||+|+++.|+|+++...++ ..|.++..++. + |++++++++.+. ++++++++
T Consensus 102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 176 (394)
T 2ay1_A 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEES
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 467777766644 99999999999999988774 25677777665 2 899999998432 36778889
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++... +.. .+.+++++|+||+++++|.|+ ||+
T Consensus 177 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~ 255 (394)
T 2ay1_A 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCL 255 (394)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCcc-ceE
Confidence 99999999975 568899999999999999999766442 111 135688999999999889997 999
Q ss_pred Ec---ChhHHHHHHHhhh-h-hhhccC-CCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 137 CG---PANLVNSMMDLHQ-G-ALMLLG-PTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 137 ~~---~~~~~~~l~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+. ++++++.+..... . ...+.+ +.+.+.++..++... ..++...+++.++++.+.+.|++.+
T Consensus 256 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (394)
T 2ay1_A 256 LALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87 6665544432111 0 011222 333333333344332 2345566677888999999998864
No 137
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.91 E-value=8.1e-23 Score=183.13 Aligned_cols=282 Identities=16% Similarity=0.159 Sum_probs=184.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ |+|
T Consensus 64 ~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~n 134 (388)
T 1b9h_A 64 HALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDVDAATYNLDPEAVAAAV-TPRTKVIM---PVH 134 (388)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHcCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCcCCCCHHHHHHhc-CcCceEEE---EeC
Confidence 5788889988 8999999999999999988773 368888887753 899999999 77888888 899
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCC---ccCCCCcEEEeCCccccccCCCeeEEEEEcChh-H--HHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS---PARLGADVVVHSISKFISGGADIIAGAVCGPAN-L--VNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~---~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~--~~~l~ 147 (324)
|||.+.++++|.++|+++|+++|+|++|+. .... ...++ |+++.|+||..+.+|++ +|+++.+++ + ++.+.
T Consensus 135 ~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~ 212 (388)
T 1b9h_A 135 MAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAF 212 (388)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHH
T ss_pred CccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999953 3322 11223 67788877443333457 599988765 5 56665
Q ss_pred Hhhhhhh---------hccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHH
Q 020548 148 DLHQGAL---------MLLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 148 ~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~ 215 (324)
....+.. ...|. .+.+..++.+...++.++...+++.++++++.+.|++. +..+..+. +..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~------ 285 (388)
T 1b9h_A 213 LRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGD-VRA------ 285 (388)
T ss_dssp HHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCC-TTC------
T ss_pred HHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCC-cCC------
Confidence 4332100 01122 24555555444456667778888889999999999987 44443221 000
Q ss_pred HHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccc--cC---------CCCHHHH
Q 020548 216 KSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST--SS---------ELNAEEK 282 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~--~~---------~~~~~~~ 282 (324)
....++++++.+++. .+...+.+.|.. .|+ .++.+.. .....+.... .. ..+....
T Consensus 286 ------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (388)
T 1b9h_A 286 ------DRNSHYMAMFRIPGLTEERRNALVDRLVE---AGL-PAFAAFR-AIYRTDAFWELGAPDESVDAIARRCPNTDA 354 (388)
T ss_dssp ------CBCCCSEEEEECTTCCHHHHHHHHHHHHH---TTC-CEEECCC-CGGGSHHHHHSSCCSSCHHHHHHTCHHHHH
T ss_pred ------CccceEEEEEEeCCcCcccHHHHHHHHHH---CCC-CcccccC-ccccChHhHhcCCCcccccccccCCHHHHH
Confidence 002467899999742 356778777764 343 2222211 0000000000 00 0000000
Q ss_pred HhcCCCCCeEEEEeccCCC-HHHHHHHHHHHHHhhh
Q 020548 283 ALAGISAGLVRMSVGYLGT-LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~-~~~~~~~l~~~l~~~~ 317 (324)
...+.+|++++ ... ++++++.+.++|+++.
T Consensus 355 ----~~~~~l~l~~~-~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 355 ----ISSDCVWLHHR-VLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp ----HHHHEEEEEGG-GGGSCHHHHHHHHHHHHHHH
T ss_pred ----HHhCeEEecCC-CCCCCHHHHHHHHHHHHHHH
Confidence 01257999999 877 8888899988887764
No 138
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.91 E-value=1.2e-23 Score=187.60 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=167.2
Q ss_pred chHHHHHHH---cc---CCC-CEEEEcCCCchhHHHHHhhhcCcc---cce-----eEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQ---LC---SSG-GHVVAARTLYGGTHALLTHFFPRA---CNI-----TTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~---~~---~~g-d~vl~~~p~y~~~~~~~~~~~~~~---~g~-----~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++.+ ++ +|| |+|++++|+|+++...+....... .+. .+..++..|++++++++ ++++++
T Consensus 97 ~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~ 175 (375)
T 2eh6_A 97 ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL-DEETAG 175 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTC-CTTEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHh-cCCeEE
Confidence 456666653 35 788 999999999988765443221110 011 15566667999999999 778999
Q ss_pred EEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCC--CcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~--~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++||||.+.+ +++|.++|+++|+++|+||+|+++...+ ...+ .|++ |+||++++ |.|+ |+
T Consensus 176 v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~~-g~~~-G~ 251 (375)
T 2eh6_A 176 IIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLGG-GVPI-GA 251 (375)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSCC-EE
T ss_pred EEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccccC-CCCe-EE
Confidence 999999999999987 9999999999999999999997654322 1224 7777 56799985 8997 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
++.++++++.+.....+ ...+ ........+...++......++..++++++.+.|++.+.... +
T Consensus 252 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~----------- 315 (375)
T 2eh6_A 252 ILAREEVAQSFTPGSHG--STFG--GNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGKGKV-K----------- 315 (375)
T ss_dssp EEEEHHHHTTCCTTSCC--CSST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-E-----------
T ss_pred EEEcHHHHhhhcCCCCC--CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-e-----------
Confidence 99888877766542221 0122 233332222222333335566678889999999998764221 2
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
+.|.++++.++. ....+.+.+.. .|+.. .|. .++++|+|
T Consensus 316 --------~~g~~~~~~~~~--~~~~~~~~l~~---~gi~~-----------~~~-----------------~~~~iRi~ 354 (375)
T 2eh6_A 316 --------GRGLMLGLELER--ECKDYVLKALE---KGLLI-----------NCT-----------------AGKVLRFL 354 (375)
T ss_dssp --------EETTEEEEECSS--CCHHHHHHHHH---TTEEC-----------EEE-----------------TTTEEEEC
T ss_pred --------EEEEEEEEEEcC--cHHHHHHHHHH---CCCEE-----------ecC-----------------CCCEEEEE
Confidence 257789999863 13455555553 23211 111 14789999
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q 020548 296 VGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~ 315 (324)
++ ...+++.++.+.++|++
T Consensus 355 ~~-~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 355 PP-LIIQKEHIDRAISVLRE 373 (375)
T ss_dssp CC-TTCCHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHH
Confidence 98 77777777777777654
No 139
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.91 E-value=1.6e-23 Score=187.99 Aligned_cols=254 Identities=11% Similarity=0.094 Sum_probs=168.9
Q ss_pred chHHHHHHHccCC----------CCEEEEcCCCchhHHHHHhhhcCc---c-----cceeEEEecCCCHHHHHHhhhcCC
Q 020548 2 SAISSVLMQLCSS----------GGHVVAARTLYGGTHALLTHFFPR---A-----CNITTTFVDISDHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~----------gd~vl~~~p~y~~~~~~~~~~~~~---~-----~g~~~~~~~~~d~~~l~~~l~~~~ 63 (324)
+|+..++..+..+ +|+|++..|+|++........... . ....+..++.+|++++++++ +++
T Consensus 104 ~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~ 182 (392)
T 3ruy_A 104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI-TPN 182 (392)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHC-CTT
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHh-ccC
Confidence 4666677665443 689999999997665444221110 0 01135566667999999999 789
Q ss_pred ceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCccccccCC-Ce
Q 020548 64 TKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFISGGA-DI 131 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~~~~g-~r 131 (324)
+++|++++++||||.+.| +++|+++|+++|+++|+||+|+++... . .....|++ |+||.+++ | .|
T Consensus 183 ~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g-G~~~ 259 (392)
T 3ruy_A 183 TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG-GVFP 259 (392)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSC
T ss_pred eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC-Chhh
Confidence 999999999999999998 999999999999999999999665321 1 12345776 46799876 6 89
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCc-eeCCCCCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLK-VLYPGLED 208 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~-~~~p~~~~ 208 (324)
+ ||+++++++++.+..... ....+.+...++.+...++.+ +...+++.++++++.+.|++.+.. +...
T Consensus 260 ~-G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---- 330 (392)
T 3ruy_A 260 I-SCAAANRDILGVFEPGSH----GSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV---- 330 (392)
T ss_dssp C-EEEEECHHHHTTCCTTSS----CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE----
T ss_pred h-EEEEECHHHHhhhccCCc----CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE----
Confidence 6 999999988877655433 222233333333322222222 345566788999999999887531 1100
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
.+.|+++++.++. +...+.+.+.. .|+ . +.|+ .
T Consensus 331 --------------~~~g~~~~~~~~~--~~~~l~~~l~~---~gi-~----------v~~~-----------------~ 363 (392)
T 3ruy_A 331 --------------RGKGLFIGIELNE--PARPYCEQLKA---AGL-L----------CKET-----------------H 363 (392)
T ss_dssp --------------EEETTEEEEEESS--CSHHHHHHHHT---TTE-E----------CCCB-----------------T
T ss_pred --------------EeeeeEEEEEEcc--hHHHHHHHHHH---CCc-E----------EecC-----------------C
Confidence 0247788888874 35566666663 333 1 1111 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++++|+|++ ...++++++.+.++|+.+
T Consensus 364 ~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 364 ENVIRIAPP-LVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 478999988 777777777777766554
No 140
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.91 E-value=5.8e-23 Score=185.65 Aligned_cols=259 Identities=15% Similarity=0.117 Sum_probs=169.3
Q ss_pred chHHHHHHHcc------CCCCE-EEEcCCCchhHHHHHhhhcCccc--ceeEEEecCCCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC------SSGGH-VVAARTLYGGTHALLTHFFPRAC--NITTTFVDISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~------~~gd~-vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+++..++.+++ ++||+ |+++.++|+++...+..+... . |.++..++. ++++++++ ++++++|+++++
T Consensus 99 ~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~~~l~~~i-~~~~~~v~~~~~ 174 (416)
T 1qz9_A 99 INLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-LQQGYTLRLVDS--PEELPQAI-DQDTAVVMLTHV 174 (416)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-HCSSCEEEEESS--GGGHHHHC-STTEEEEEEESB
T ss_pred HHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-hcCCceEEEeCc--HHHHHHHh-CCCceEEEEecc
Confidence 35666677665 89997 555567888766654322211 3 888888876 88899988 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CC-CCccCCCCcEEEeCCccccccCCCeeE-EEEEcChhHHHHHHHh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-LSPARLGADVVVHSISKFISGGADIIA-GAVCGPANLVNSMMDL 149 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~-G~i~~~~~~~~~l~~~ 149 (324)
+||||.+.|+++|.++|+++|+++|+|++|+. .. .+....++|++++|+||++++ |.+ + |+++.++++++.+...
T Consensus 175 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~-g~~-~~g~l~~~~~~~~~l~~~ 252 (416)
T 1qz9_A 175 NYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG-GPG-SQAFVWVSPQLCDLVPQP 252 (416)
T ss_dssp CTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCC-CTT-CCCEEEECTTTTTTSCCS
T ss_pred ccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCC-CCC-CeEEEEECHHHHhccCCC
Confidence 99999999999999999999999999999842 11 121233689999999999743 233 4 9998888877665442
Q ss_pred hhhh-------------------hhccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC----CCce
Q 020548 150 HQGA-------------------LMLLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKL----GLKV 201 (324)
Q Consensus 150 ~~~~-------------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~----~~~~ 201 (324)
..++ .....+++...... .++... ..++...+++.++++++.+.|++. +..+
T Consensus 253 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 332 (416)
T 1qz9_A 253 LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL 332 (416)
T ss_dssp CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 1110 01112223322211 122222 346677788899999999999886 5555
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHH
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 281 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 281 (324)
..|.- . ...++++++.+++ ...+.+.+.. .|+.. .+
T Consensus 333 ~~~~~---~------------~~~~~~~~~~~~~---~~~l~~~l~~---~gi~~-----------~~------------ 368 (416)
T 1qz9_A 333 VTPRE---H------------AKRGSHVSFEHPE---GYAVIQALID---RGVIG-----------DY------------ 368 (416)
T ss_dssp CSCSS---G------------GGBCSEEEEECTT---HHHHHHHHHT---TTEEC-----------EE------------
T ss_pred eCCCC---H------------HHcCCEEEEecCC---HHHHHHHHHh---CCcEe-----------cc------------
Confidence 43320 0 0135688999875 4456666653 23311 00
Q ss_pred HHhcCCCCCeEEEEeccC-CCHHHHHHHHHHHHHhh
Q 020548 282 KALAGISAGLVRMSVGYL-GTLDQRWSQFEKALSRM 316 (324)
Q Consensus 282 ~~~~~~~~~~iR~s~g~~-~~~~~~~~~l~~~l~~~ 316 (324)
..++.+|+|++ . ..++++++.+.++|+.+
T Consensus 369 -----~~~~~lRis~~-~~~~t~~~i~~~~~~l~~~ 398 (416)
T 1qz9_A 369 -----REPRIMRFGFT-PLYTTFTEVWDAVQILGEI 398 (416)
T ss_dssp -----ETTTEEEEECC-TTTCCHHHHHHHHHHHHHH
T ss_pred -----CCCCeEEEeCc-ccCCCHHHHHHHHHHHHHH
Confidence 02478999997 4 55666666666666554
No 141
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.91 E-value=2.2e-22 Score=179.25 Aligned_cols=285 Identities=15% Similarity=0.182 Sum_probs=184.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.++ +++||+|+++.|+|+++...++ ..|.++.+++.+ |++++++++ ++++++|+ |+||
T Consensus 64 ~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~---~~n~ 134 (374)
T 3uwc_A 64 DALAMSFKMLNIGAGDEVITCANTFIASVGAIV-----QAGATPVLVDSENGYVIDPEKIEAAI-TDKTKAIM---PVHY 134 (374)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTSSBCGGGTGGGC-CTTEEEEC---CBCG
T ss_pred HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCCCcCHHHHHHhC-CCCceEEE---EeCC
Confidence 4788888988 8999999999999999988773 378888888875 899999999 77888888 8899
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCccCC--CCcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHHh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARL--GADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDL 149 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~~~~--~~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~~ 149 (324)
||.+.++++|.++|+++|+++|+|++|+.. ..+.... ..|+++.|+| |+++++|. +|+++.+ +++.+.+...
T Consensus 135 ~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~ 212 (374)
T 3uwc_A 135 TGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLY 212 (374)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999432 2222222 3799999977 99977444 4888754 5677777765
Q ss_pred hhhhhh--------ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 150 HQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 150 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
..+... .....+....++........++...++..++++++.+.|++.+..+..|..+....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---------- 282 (374)
T 3uwc_A 213 RNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVY---------- 282 (374)
T ss_dssp TBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEE----------
T ss_pred HhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCc----------
Confidence 431100 01122455555555445566777777788888999999988752122232111000
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC----CCCHHHHHhcCCCCCeEEEEec
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS----ELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iR~s~g 297 (324)
..-..+.+..++ ...+.+.+.. .|+ .++.+........|...... ..+... ....+.+|++++
T Consensus 283 --~~~~~~~~~~~~---~~~l~~~L~~---~gi-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lrl~~~ 349 (374)
T 3uwc_A 283 --HVFHIYVLRVKY---RDQLFQYLKD---NGI-EVKIHYPIAMHLQPAAKSLGYQQGDFPMAE----KHGEAVITLPAH 349 (374)
T ss_dssp --CCCSSEEEEETT---HHHHHHHHHH---TTB-CCBCSCSSCGGGSGGGGGGCCCTTSCHHHH----HHHHHEEEECCC
T ss_pred --eeeEEEEEEcCC---HHHHHHHHHH---CCC-ccccCCCCccccChhhhhcCCccCCCccHH----HHHhCEEEccCC
Confidence 001123444443 4455565553 333 22333211111111110000 000000 011368999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCC
Q 020548 298 YLGTLDQRWSQFEKALSRMQDSGV 321 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~~~~~~ 321 (324)
...++++++.+.++|+++-++.+
T Consensus 350 -~~~t~edi~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 350 -PYLTEEEINYIIKKVREFYLEKH 372 (374)
T ss_dssp -TTSCHHHHHHHHHHHHHHHHTTT
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999988765544
No 142
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.90 E-value=7.8e-23 Score=182.27 Aligned_cols=280 Identities=16% Similarity=0.185 Sum_probs=180.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ ++|
T Consensus 62 ~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~---~~n 132 (373)
T 3frk_A 62 DALHLILKGYDIGFGDEVIVPSNTFIATALAVS-----YTGAKPIFVEPDIRTYNIDPSLIESAI-TEKTKAII---AVH 132 (373)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-----HHSCEEEEECEETTTTEECGGGTGGGC-CTTEEEEE---EEC
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEeccccccCcCHHHHHHhc-CCCCeEEE---EEC
Confidence 4788889988 8999999999999999988874 368888887754 899999999 77899888 678
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCC--CcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~--~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
|||...|+++|.++|+++|+++|+|++|+. ...+....+ .|+++.|++ |+++++| + +|+++.+ +++.+.+..
T Consensus 133 ~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-~-gg~~~~~~~~~~~~~~~ 210 (373)
T 3frk_A 133 LYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLG-D-GGAVVTNDKDLAEKIKA 210 (373)
T ss_dssp CTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS-S-CEEEEESCHHHHHHHHH
T ss_pred CCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccc-e-eEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999843 333333334 799999976 9997633 3 4888765 567777776
Q ss_pred hhhhhhh------c--cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 149 LHQGALM------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
...+... . ....+....++.....+..++...++..++++++.+.|++.+ +..|..+....
T Consensus 211 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~--------- 279 (373)
T 3frk_A 211 LSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN--VIIPVEADYAK--------- 279 (373)
T ss_dssp HHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEE---------
T ss_pred HHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCc---------
Confidence 5542100 0 112245555555444455566667777888888888888776 33333211100
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC----CCCHHHHHhcCCCCCeEEEEe
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS----ELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iR~s~ 296 (324)
.....+.+..++ ...+.+.|.. .|+ .++.+......+.|...... ..+.... ...+.+|+|+
T Consensus 280 ---~~~~~~~~~~~~---~~~l~~~L~~---~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lrl~~ 345 (373)
T 3frk_A 280 ---HVWYTFVIRSEK---RDELQKYLNN---NGI-GTLIHYPIPIHLQQAYKDLGFKTGNFPIAEK----IANEILSIPI 345 (373)
T ss_dssp ---CCCSSEEEEESS---HHHHHHHHHH---TTB-CCBCSCSSCGGGSGGGGGGCCCTTSSHHHHH----HHHHEEEECC
T ss_pred ---eeeEEEEEEeCC---HHHHHHHHHH---CCC-CcccCcCCccccChHHHhcCCCCCCCHHHHH----HHhCEEEccC
Confidence 011234455543 4455555553 233 22322111111111110000 0000000 1136899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhh
Q 020548 297 GYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+ ..+++++++.+.++|++...
T Consensus 346 ~-~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 346 W-YGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp C-TTCCHHHHHHHHHHHHTCC-
T ss_pred C-CCCCHHHHHHHHHHHHHHhh
Confidence 9 99999999999999987753
No 143
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.90 E-value=2.9e-22 Score=178.21 Aligned_cols=279 Identities=16% Similarity=0.181 Sum_probs=185.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ |+|
T Consensus 61 ~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~~ 131 (367)
T 3nyt_A 61 DALQIVQMALGVGPGDEVITPGFTYVATAETVA-----LLGAKPVYVDIDPRTYNLDPQLLEAAI-TPRTKAII---PVS 131 (367)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCGGGTGGGC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCccCCcCHHHHHHhc-CcCCcEEE---eeC
Confidence 4788888888 8999999999999999988874 368888888764 889999999 88999988 788
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCC--cEEEeCC--ccccccCCCeeEEEEEc-ChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~--d~~~~S~--sK~~~~~g~r~~G~i~~-~~~~~~~l~~ 148 (324)
|+|...++++|.++|+++|+++|+|++|+ +...+....+. |+++.|| +|+++++|. +|+++. ++++.+.+..
T Consensus 132 ~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~ 209 (367)
T 3nyt_A 132 LYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQ 209 (367)
T ss_dssp GGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHH
T ss_pred CccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999984 33333333333 9999997 899987554 488876 5778888877
Q ss_pred hhhhhhh--------ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 149 LHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
...+... .....+....++..+..+..++...++..++++++.+.|++.+..+. ..+....
T Consensus 210 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~--~~~~~~~--------- 278 (367)
T 3nyt_A 210 IARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVGIGTP--FIEVNNI--------- 278 (367)
T ss_dssp HTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCC--CCCTTEE---------
T ss_pred HHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeecc--CCCCCCc---------
Confidence 5541100 01234566666665555666777777888889999999999865322 1110000
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccc-ccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS-TSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
....++.+.+++ ...+.+.|.. .|+ .++.+........|... ....++.... ...+.+|++++ .
T Consensus 279 ---~~~~~~~~~~~~---~~~l~~~L~~---~GI-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~lp~~-~ 343 (367)
T 3nyt_A 279 ---SVYAQYTVRMDN---RESVQASLKA---AGV-PTAVHYPIPLNKQPAVADEKAKLPVGDK----AATQVMSLPMH-P 343 (367)
T ss_dssp ---CCCSSEEEECSS---HHHHHHHHHH---HTC-CCBCSCSSCGGGSGGGCCTTCCCHHHHH----HHHHEEEECCC-T
T ss_pred ---eeeEEEEEEeCC---HHHHHHHHHH---CCC-ceeccCCCccccChhhhccCCCChHHHH----HHhCeEEccCC-C
Confidence 122345666654 3455555553 333 22222111111111110 0001111111 12468999999 9
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 020548 300 GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~ 317 (324)
..++++++.+.+++.+..
T Consensus 344 ~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 344 YLDTASIKIICAALTNLE 361 (367)
T ss_dssp TCCHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887664
No 144
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.90 E-value=2.8e-22 Score=179.80 Aligned_cols=282 Identities=17% Similarity=0.199 Sum_probs=186.3
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|+++ |
T Consensus 65 ~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~---~ 135 (393)
T 1mdo_A 65 AGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVDRDTLMVTPEHIEAAI-TPQTKAIIPV---H 135 (393)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEECCB---C
T ss_pred HHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-----HCCCEEEEEeccCCcCCCCHHHHHHhc-CCCceEEEEe---C
Confidence 5788899998 8999999999999999988774 368888887642 799999999 7789999875 5
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCC-CcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG-ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~-~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~~ 149 (324)
|+|.+.++++|.++|+++|+++|+|++|+. ........+ .|++++|+| |++++ ++ +|+++.+ +++.+.+...
T Consensus 136 ~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~--~~-~g~~~~~~~~~~~~l~~~ 212 (393)
T 1mdo_A 136 YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITC--AE-GGIVVTDNPQFADKLRSL 212 (393)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCS--SS-CEEEEESCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCcccc--cc-ceEEEeCCHHHHHHHHHH
Confidence 899999999999999999999999999953 333222345 899999999 87754 47 4999886 7888888765
Q ss_pred hhhhh--------------hc----cC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeC-CCCCC
Q 020548 150 HQGAL--------------ML----LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY-PGLED 208 (324)
Q Consensus 150 ~~~~~--------------~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-p~~~~ 208 (324)
..... .. .| ..+....++.....+..++...++..++++++.+.|++.+.++.. |.. .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~ 291 (393)
T 1mdo_A 213 KFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSW-E 291 (393)
T ss_dssp TBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSS-C
T ss_pred HhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCC-C
Confidence 43110 00 01 123455544444444556666777778899999999987754321 210 0
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC---HHHHHHHHHHhhccccccccccccCCccceeccccccc---cCCCCHHHH
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST---SSELNAEEK 282 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~ 282 (324)
. .+.+.++++.+++ ..+...+.+.+.. .|+ .++.|..... ..+.... ....+...
T Consensus 292 ~-------------~~~~~~~~v~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~- 352 (393)
T 1mdo_A 292 H-------------IHAWHLFIIRVDEARCGITRDALMASLKT---KGI-GTGLHFRAAH-TQKYYRERFPTLTLPDTE- 352 (393)
T ss_dssp E-------------ECCCSCEEEECCHHHHSSCHHHHHHHHHH---TTB-CCBCCCCCGG-GSHHHHHHSTTCCCHHHH-
T ss_pred C-------------CceeEEEEEEecccccccCHHHHHHHHHh---CCC-CcccccCccc-cChhhhccCCccCChhHH-
Confidence 0 0245578999862 1235567777664 343 3333321100 0000000 00000000
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
.+..+.+|++++ ...++++++.+.++|+++-+.
T Consensus 353 ---~~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 353 ---WNSERICSLPLF-PDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp ---HHHTTEEEECCC-TTCCHHHHHHHHHHHHHHHC-
T ss_pred ---HHHhCEEEecCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 001368999999 888888899999888877543
No 145
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.90 E-value=3.8e-23 Score=186.29 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=149.4
Q ss_pred chHHHHHHHccC-------CC-CEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~-------~g-d~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~~~ 65 (324)
+|+..++++++. +| |+|++.+|+|+++.......... ..+..+..++.+|++++++++ +++++
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~ 185 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI-DDSTC 185 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC-STTEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh-cCCeE
Confidence 467777777654 66 99999999999875444322110 012456677777999999999 78999
Q ss_pred EEEEecCCCCccccc-----ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeE
Q 020548 66 VLYFESISNPTLAVA-----NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 66 ~v~~~~~~nptG~~~-----~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+|+++ |+||+|.+. ++++|+++|+++|+++|+||+|+++.... .....|++ |+||.++ +|.|+
T Consensus 186 ~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~- 260 (406)
T 4adb_A 186 AVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPV- 260 (406)
T ss_dssp EEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-
T ss_pred EEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCe-
Confidence 99999 899999764 58899999999999999999997664321 12346776 5799998 68997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
||+++++++++.+.....+ .+..++.+.+.++...+..... +...+++.++++++.+.|++.+.......
T Consensus 261 G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------- 330 (406)
T 4adb_A 261 GALLATEECARVMTVGTHG-TTYGGNPLASAVAGKVLELINT-PEMLNGVKQRHDWFVERLNTINHRYGLFS-------- 330 (406)
T ss_dssp EEEEECHHHHHTCCTTSSC-CSSTTCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCEE--------
T ss_pred EEEEEcHHHHhhhccCCcC-CCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCce--------
Confidence 9999999988877654331 1122222222222222222222 45667778888889888887532110000
Q ss_pred HHHHHhccCCCcceEEEEEeCCHH--HHHHHHHHhhc
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQN 248 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~~~l~~ 248 (324)
...+.|.++++.++... ....+.+.+..
T Consensus 331 -------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 360 (406)
T 4adb_A 331 -------EVRGLGLLIGCVLNADYAGQAKQISQEAAK 360 (406)
T ss_dssp -------EEEEETTEEEEEECTTTTTCHHHHHHHHHH
T ss_pred -------EEEEEEEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 01135779999997521 45667777664
No 146
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.90 E-value=1.1e-21 Score=176.57 Aligned_cols=185 Identities=22% Similarity=0.185 Sum_probs=139.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..+++++ +++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|+ ++|
T Consensus 89 ~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~n 159 (399)
T 2oga_A 89 DALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-----ATGATPVPVEPHEDHPTLDPLLVEKAI-TPRTRALL---PVH 159 (399)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCSSSSSBCHHHHHHHC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HCCCEEEEEecCCCCCCcCHHHHHHhc-CCCCeEEE---EeC
Confidence 4788888888 8999999999999999888774 267888777642 799999999 77888888 578
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCccCCC--CcEEEeCC--ccccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI--SKFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~~~~~--~d~~~~S~--sK~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
|||.+.++++|.++|+++|+++|+|++|+.+ ..+....+ .|++++|+ +|+++++| +. |+++.+ +++.+.+..
T Consensus 160 ~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G-~~-g~~~~~~~~~~~~l~~ 237 (399)
T 2oga_A 160 LYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG-DG-GAVVTGDPELAERLRM 237 (399)
T ss_dssp GGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS-CC-EEEEESCHHHHHHHHH
T ss_pred CcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC-ce-EEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999533 22222233 69999999 69998877 84 998875 888888876
Q ss_pred hhhhhhh--------ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 149 LHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 149 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
....... .....+....++.+...++.++...++..++++++.+.|++.
T Consensus 238 ~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 294 (399)
T 2oga_A 238 LRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGL 294 (399)
T ss_dssp HHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5441100 011234555555544455556666666777888888888876
No 147
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.90 E-value=4.3e-22 Score=178.59 Aligned_cols=279 Identities=14% Similarity=0.178 Sum_probs=183.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ ++|
T Consensus 82 ~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~---~~n 152 (391)
T 3dr4_A 82 TALHLALVAMGIGPGDEVIVPSLTYIASANSVT-----YCGATPVLVDNDPRTFNLDAAKLEALI-TPRTKAIM---PVH 152 (391)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCGGGSGGGC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-----HCCCEEEEEecCccccCcCHHHHHHhc-CCCceEEE---EEC
Confidence 4788888888 8999999999999999988874 368888888765 789999998 77899888 568
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCC--CCcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARL--GADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~--~~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
|||...|+++|.++|+++|+++|+|++|+. ........ -.|+++.|++ |++++ ++ +|+++.+ +++.+.+..
T Consensus 153 ~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~--g~-gg~~~~~~~~~~~~~~~ 229 (391)
T 3dr4_A 153 LYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT--GE-GGMITTNDDDLAAKMRL 229 (391)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC--BS-CEEEEESCHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc--CC-eEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999843 33222222 2478888865 88855 45 4888655 567777776
Q ss_pred hhhhhhh--------c--cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC--CCCCCchhHHHH
Q 020548 149 LHQGALM--------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP--GLEDHPHHELLK 216 (324)
Q Consensus 149 ~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p--~~~~~~~~~~~~ 216 (324)
...+... . ....+....++..+.....++...++..++++++.+.|++.+..+..+ ...
T Consensus 230 ~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--------- 300 (391)
T 3dr4_A 230 LRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALT--------- 300 (391)
T ss_dssp HHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTT---------
T ss_pred HHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCC---------
Confidence 5531100 0 012345555554444455666777778888999999999886655433 100
Q ss_pred HHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccc--cCCCCHHHHHhcCCCCCeE
Q 020548 217 SMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST--SSELNAEEKALAGISAGLV 292 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i 292 (324)
......++++.+++ ..+...+.+.+.. .|+ .++.|.. .+.+.|.... ....+.... ...+.+
T Consensus 301 -----~~~~~~~~~i~~~~~~~~~~~~l~~~L~~---~GI-~v~~~~~-p~~~~~~~~~~~~~~~~~~~~----~~~~~l 366 (391)
T 3dr4_A 301 -----GRHVFWMYTVRLGEGLSTTRDQVIKDLDA---LGI-ESRPVFH-PMHIMPPYAHLATDDLKIAEA----CGVDGL 366 (391)
T ss_dssp -----SCCCCSSEEEEECSSCSSCHHHHHHHHHH---TTC-CCEECCC-CGGGSGGGGGGCCTTCHHHHH----HHHHEE
T ss_pred -----CcceeEEEEEEECCccchhHHHHHHHHHH---CCC-ceeecCC-ccccChhhhhcCcCCChHHHH----HHhCeE
Confidence 01234467888864 3345667777664 343 3332211 1111111100 000111111 124689
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
|++++ ...++++++.+.++|+++
T Consensus 367 rl~~~-~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 367 NLPTH-AGLTEADIDRVIAALDQV 389 (391)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHTT
T ss_pred EccCC-CCCCHHHHHHHHHHHHHH
Confidence 99999 888999999999888765
No 148
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.90 E-value=7.3e-22 Score=174.60 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=168.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH--HhhhcCccc--ceeEEEecCC----CHHHHHH-hhhcC-------Cce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC--NITTTFVDIS----DHEMVNS-AIVQG-------RTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~--~~~~~~~~~--g~~~~~~~~~----d~~~l~~-~l~~~-------~~~ 65 (324)
+|+..++.+++++||+|+++.|+|.++... +. . . |.++..++.+ |++++++ ++ ++ +++
T Consensus 70 ~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~~~g~~~~~v~~~~~~~d~~~l~~~~i-~~~~~~~~~~~~ 143 (356)
T 1v72_A 70 AANALCLSAMTPPWGNIYCHPASHINNDECGAPE----F-FSNGAKLMTVDGPAAKLDIVRLRERTR-EKVGDVHTTQPA 143 (356)
T ss_dssp HHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH----H-HTTSCEEEECCCGGGCCCHHHHHHHTT-SSTTCTTSCEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH----H-HhCCcEEEEecCCCCeEcHHHHHHHhh-hcchhhccCCce
Confidence 467888888889999999999999876544 42 2 4 7788887764 8999999 88 43 689
Q ss_pred EEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcC-----CCCccC----CCCcEEEeCCccccccCCCeeE
Q 020548 66 VLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPL-----VLSPAR----LGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 66 ~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~-----~~~~~~----~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+|++++|+| ||.+. ++++|+++|+++|+++|+|++|..+ ...+.. .+.|+++.|+||+ +++ +|
T Consensus 144 ~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~---~G 218 (356)
T 1v72_A 144 CVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVL---AA 218 (356)
T ss_dssp EEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCS---SC
T ss_pred EEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCc---Cc
Confidence 999999987 99954 5889999999999999999998432 122222 2678999999999 443 23
Q ss_pred -EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 134 -GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 134 -G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
|++++++++++.+....... ..........+......+ ..+....+++.++++++.+.|++. +.++..|.
T Consensus 219 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 292 (356)
T 1v72_A 219 EAIVLFNTSLATEMSYRRKRA--GHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT---- 292 (356)
T ss_dssp EEEEESSGGGHHHHHHHHHHT--TCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC----
T ss_pred cEEEEECHHHHhhHHHHhhcc--CchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCC----
Confidence 69988999988876554311 111122222222122112 223445667788899999999885 44554454
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
.++++++.++. .+.+.+.. .|+ .+..| . ++ +
T Consensus 293 ---------------~~~~~~~~~~~-----~~~~~l~~---~gi-~v~~g----------~-------------~~--~ 323 (356)
T 1v72_A 293 ---------------EANILFCRLDS-----AMIDALLK---AGF-GFYHD----------R-------------WG--P 323 (356)
T ss_dssp ---------------CSSEEEEEECH-----HHHHHHHH---TTC-BCBCS----------S-------------SS--T
T ss_pred ---------------CccEEEEEcCH-----HHHHHHHh---cCe-EEecc----------c-------------cC--C
Confidence 46688888852 45555543 232 11111 1 01 4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+++|++++ ...+++.++.+.++|+++-+
T Consensus 324 ~~iRi~~~-~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 324 NVVRFVTS-FATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp TEEEEECC-TTCCHHHHHHHHHHHHHTC-
T ss_pred CeEEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 78999999 77777777777777766543
No 149
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=7.5e-23 Score=181.25 Aligned_cols=260 Identities=13% Similarity=0.062 Sum_probs=165.6
Q ss_pred chHHHHHHHccCCCC--EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGG--HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd--~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++|| .|+++.+.|........ .. ...|.++..++.+ |+++++++. ++++|++++|+||
T Consensus 73 ~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~-~~-~~~g~~~~~v~~~~~~~d~~~l~~~~---~~~~v~~~~p~np 147 (357)
T 3lws_A 73 MAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG-LK-ELHPIETILVGAADRLMTLDEIKALP---DIACLLLELPQRE 147 (357)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-HH-HHSSCEEEECSCTTSCCCHHHHHTCC---SCSEEEEESSBGG
T ss_pred HHHHHHHHHHhhcCCCcEEEecccceeeeeccch-hh-hccCcEEEEecCCCCCcCHHHHhcCc---CcceEEEEccccc
Confidence 367778888888888 67766666554432100 00 1147778777653 899998874 3899999999999
Q ss_pred c-ccccC---hHHHHHHHHhcCCEEEEcCCCC-c----CCCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 76 T-LAVAN---IPELSRLAHDKGVTVVVDNTFS-P----LVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 76 t-G~~~~---~~~i~~l~~~~~~~~ivD~~~~-~----~~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+ |.+.+ +++|+++|+++|+++|+|++|. + ..... ...+.|+++.|+||+++++. +|++++++++++
T Consensus 148 ~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~~~~ 224 (357)
T 3lws_A 148 IGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIA---GAILAGPAAFCQ 224 (357)
T ss_dssp GTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSS---CEEEEECHHHHH
T ss_pred CCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCc---eEEEEcCHHHHH
Confidence 8 98875 8899999999999999999974 1 11111 11357888999999996555 599999999999
Q ss_pred HHHHhhhhhhhccCCC-CCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-Ccee-CCCCCCCchhHHHHHHhcc
Q 020548 145 SMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVL-YPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~-~p~~~~~~~~~~~~~~~~~ 221 (324)
.+...... ..+.. .....+......+....++++++.++++++.+.|++.+ .++. .|.
T Consensus 225 ~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---------------- 285 (357)
T 3lws_A 225 TARIWKRR---YGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVP---------------- 285 (357)
T ss_dssp HHHHHHHH---TTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSC----------------
T ss_pred HHHHHHHH---hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCC----------------
Confidence 88766541 11111 11111111112222233445556788899999999874 4552 333
Q ss_pred CCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 222 EYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.++++++.++.. .....+.+.+.. .|+ .+. |+... +....++|+++| .
T Consensus 286 ---~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gi-~v~----------~g~~~------------~~~~~~~r~~i~-~ 335 (357)
T 3lws_A 286 ---VSNMFHLHFDGQAADISPKLEQVQEE---TGL-GFV----------GYLVD------------KDGYCSTEISVG-D 335 (357)
T ss_dssp ---SSSEEEEEEESCHHHHHHHHHHHHHH---HCE-ESC----------SCCEE------------CSSEEEEEEEBC-T
T ss_pred ---cceEEEEEecCChHHHHHHHHHHHHh---cCe-EEe----------ccccc------------CCCceEEEEEec-c
Confidence 577899998742 235566666664 333 222 21100 111258999999 6
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 020548 300 GTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~~ 318 (324)
.......+.++++++.+.+
T Consensus 336 ~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 336 AYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp TGGGSCHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHH
Confidence 6544455666777666643
No 150
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.90 E-value=4.4e-23 Score=185.43 Aligned_cols=190 Identities=11% Similarity=0.024 Sum_probs=128.4
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee-EEEe---cCC----CHHHHHHhhh--cCCceEEEEecCC
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFV---DIS----DHEMVNSAIV--QGRTKVLYFESIS 73 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~---~~~----d~~~l~~~l~--~~~~~~v~~~~~~ 73 (324)
+..+.+.++.|||+|++++|+|+++...++. .|.+ +... +.. |.+.+.+.++ .++++++++++||
T Consensus 126 ~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~-----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~ 200 (420)
T 4h51_A 126 AKLLTRVFDAETTPIYLSDPTWPNHYGVVKA-----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAH 200 (420)
T ss_dssp HHHHTTTSCTTTSCEEEEESCCTHHHHHHHH-----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSC
T ss_pred HHHHHHhcCCCCCEEEEecCCchhHHHHHHH-----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCC
Confidence 3344445678999999999999999998852 4544 3222 211 6777777663 3567788888999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------------CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------------~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||||...+ +++|+++|+++++++|+|++|.+|..... .....+++.|+||.|+++|+|+ ||++.
T Consensus 201 NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv-G~~~~ 279 (420)
T 4h51_A 201 NPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA-GTLSL 279 (420)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce-EEEEe
Confidence 99999974 77889999999999999999987754321 1145689999999999999997 99977
Q ss_pred ChhHHHHHHHhhhh---hhhccCCCCC---HHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 139 PANLVNSMMDLHQG---ALMLLGPTMN---PKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 139 ~~~~~~~l~~~~~~---~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
+.+..+........ ..+.....+. +..+...+... ..+....+++.++++.+.+.|++.+.
T Consensus 280 ~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~ 353 (420)
T 4h51_A 280 LLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT 353 (420)
T ss_dssp ECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 65444333322110 1112222222 22222233221 22445567788999999999999864
No 151
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.89 E-value=3.7e-23 Score=187.49 Aligned_cols=180 Identities=12% Similarity=0.113 Sum_probs=131.2
Q ss_pred chHHHHHHHc--------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~--------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+||..++.++ ++|||+|+++.|+|+.+...++. .|.++.... .|+++|++++ ++++++|++++||
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~-----~g~~~~~~~-~d~~~l~~~~-~~~~k~v~l~~p~ 206 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-----FDKKGYVWA-GNAANYVNVS-NPEQYIEMVTSPN 206 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-----SCBTTEEEE-EEGGGGTTCS-CGGGEEEEEESSC
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH-----cCCeeeeec-CCHHHHHHhh-cCCceEEEEcCCC
Confidence 5788999999 89999999999999999988852 455544332 2678888888 6689999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccC--CCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR--LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~ 150 (324)
||||.+.+ + +++ ++..+.|+++..-...... .+.+++++|+||.++++|.|+ ||+++ ++++++.+....
T Consensus 207 NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~~~~~~~~l~~~l~~~~ 278 (427)
T 2hox_A 207 NPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYM 278 (427)
T ss_dssp TTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHH
T ss_pred CCcccccH-H----HHc--CCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCceE-EEEEECCHHHHHHHHHHH
Confidence 99999999 4 233 5678899887321111122 468999999999999999997 99998 589999988776
Q ss_pred hhhhhccCCCCCHHHHHHHhcCc------------ccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 151 QGALMLLGPTMNPKVAFELSERI------------PHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
.. .....+.+.+..+..++... ..+....+++.++++.+.+.|++.
T Consensus 279 ~~-~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (427)
T 2hox_A 279 TK-NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS 336 (427)
T ss_dssp HH-HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred Hh-cCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 51 11223334444443343321 223455667788999999999987
No 152
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.89 E-value=7.2e-23 Score=183.87 Aligned_cols=255 Identities=14% Similarity=0.156 Sum_probs=164.0
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHH-HHhhhcCc-------ccceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFFPR-------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~-~~~~~~~~-------~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..+++++. .+||+|++++|+|++... .+...... .....+..++..|++++++++ ++++++|++++
T Consensus 115 ~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~ 193 (395)
T 1vef_A 115 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV-DEETAAVILEP 193 (395)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC-CTTEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHh-ccCEEEEEEeC
Confidence 46777777653 578999999999976433 33210000 001124555557999999999 77899999988
Q ss_pred CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++||||.+.+ +++|+++|+++|+++|+|++|+++... + .....|++ |+||++++ |.|+ |+++.++
T Consensus 194 ~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-g~~~-G~~~~~~ 269 (395)
T 1vef_A 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGG-GVPL-GVAVMRE 269 (395)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSC-EEEEEEH
T ss_pred ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccC-CCce-EEEEehH
Confidence 8999999887 999999999999999999999765321 1 22346766 78999987 8997 9999888
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+..... ....+.+....+.+...++.+ ....++..++++++.+.|++.+..+....
T Consensus 270 ~~~~~l~~~~~----~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------- 332 (395)
T 1vef_A 270 EVARSMPKGGH----GTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV------------- 332 (395)
T ss_dssp HHHHTSCTTSS----CCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEE-------------
T ss_pred HHHhhhccCCc----CCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCceEEE-------------
Confidence 87766543211 112223333322222222222 23456678888999999988754211000
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhh-ccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
.+.|+++++.++.. ...+.+.+. . .|+.. .|. .++++|+|++
T Consensus 333 ----~~~g~~~~~~~~~~--~~~l~~~l~~~---~gi~v-----------~~~-----------------~~~~iRi~~~ 375 (395)
T 1vef_A 333 ----RGMGLMVGLELKEK--AAPYIARLEKE---HRVLA-----------LQA-----------------GPTVIRFLPP 375 (395)
T ss_dssp ----EEETTEEEEEESSC--SHHHHHHHHHH---HCEEC-----------EES-----------------STTEEEECCC
T ss_pred ----EEEEEEEEEEEcCh--HHHHHHHHHHH---CCeEE-----------ecC-----------------CCCEEEEeCC
Confidence 02567999999731 345555554 3 23211 110 1478999998
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 020548 298 YLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~ 316 (324)
...+++.++.+.++|+++
T Consensus 376 -~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 376 -LVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp -TTCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH
Confidence 777777777777766554
No 153
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.89 E-value=2.3e-22 Score=186.71 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=173.9
Q ss_pred chHHHHHHHccCCC--------CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSG--------GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~g--------d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~ 68 (324)
+|+..+++++.++| |+|+++.++|+++...++ ..|.+++.++.+ |+++|++++ ++++++|+
T Consensus 171 ~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-----~~G~~v~~v~~~~~~~~d~~~Le~~i-~~~~~~v~ 244 (514)
T 3mad_A 171 ESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-----YFGIKLVRTPLDADYRADVAAMREAI-TPNTVVVA 244 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-----HHTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-----HcCCeeEEeeeCCCCCCCHHHHHHHh-ccCCEEEE
Confidence 46778888877766 999999999999988874 368888888765 899999999 78999999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC-------------CccCCCCcEEEeCCccccccCCCeeEEE
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-------------SPARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-------------~~~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+++|+||||.+.|+++|+++|+++|+++|+|++|+++.. +....++|+++.|+||++++ +.++ |+
T Consensus 245 ~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~-g~ 322 (514)
T 3mad_A 245 GSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYG-AKGT-SV 322 (514)
T ss_dssp EETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCC-CSSC-EE
T ss_pred EeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCC-CCCe-EE
Confidence 999999999999999999999999999999999965422 11233789999999999655 4565 88
Q ss_pred EEcChhHHHHHHHhhh-hh-------hhccCCCCCH--HHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 136 VCGPANLVNSMMDLHQ-GA-------LMLLGPTMNP--KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~-~~-------~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
++.+++.......... .+ ....+..... ..++..+. +...++...++..++++++.+.|++. ++.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 402 (514)
T 3mad_A 323 ILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKIL 402 (514)
T ss_dssp EEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEES
T ss_pred EEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Confidence 8666554433211100 00 0011111111 12222222 22335667778889999999999987 44544
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.+. .++++|..++ .+...+.+.+.. .|+. . ++.
T Consensus 403 ~~~--------------------~~~~~~~~~~-~~~~~l~~~L~~---~Gi~---v---------~g~----------- 435 (514)
T 3mad_A 403 GDP--------------------LWVIAVASDE-LNIYQVMEEMAG---RGWR---L---------NGL----------- 435 (514)
T ss_dssp SCC--------------------SSEEEEECSS-SCHHHHHHHHHT---TTCB---C---------EEE-----------
T ss_pred CCC--------------------eEEEEEeCCC-CCHHHHHHHHHh---cCCE---e---------ccC-----------
Confidence 332 3378887753 235567777664 2321 1 100
Q ss_pred HhcCCCCCeEEEEeccC-----CCHHHHHHHHHHHHHhhhhc
Q 020548 283 ALAGISAGLVRMSVGYL-----GTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~-----~~~~~~~~~l~~~l~~~~~~ 319 (324)
. .++.+|++++ . ++.++.++.|.++++.+.+.
T Consensus 436 ---~-~~~~~Ri~~~-~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 436 ---H-RPPAFHVALT-LRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp ---T-TTTEEEEECC-GGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred ---C-CCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1367999987 3 34555667777777666543
No 154
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.89 E-value=2.9e-23 Score=186.65 Aligned_cols=251 Identities=12% Similarity=0.135 Sum_probs=161.4
Q ss_pred chHHHHHHHccC------C-CCEEEEcCCCchhHHH-HHhhhcCccccee------------EEEecCCCHHHHHHhhhc
Q 020548 2 SAISSVLMQLCS------S-GGHVVAARTLYGGTHA-LLTHFFPRACNIT------------TTFVDISDHEMVNSAIVQ 61 (324)
Q Consensus 2 ~ai~~~~~~~~~------~-gd~vl~~~p~y~~~~~-~~~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~ 61 (324)
+|+..+++++.. + +++|++.+|.|++... .+.. .|.+ +..++.+|++++++++ +
T Consensus 108 ~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-----~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l-~ 181 (397)
T 2ord_A 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA-----TGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM-S 181 (397)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH-----SBCHHHHGGGCSCCTTEEEECTTCHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc-----cCChhhccccCCCCCCeeEecCCCHHHHHHHh-h
Confidence 467777776653 5 4789999999976443 3321 2322 6677777999999999 7
Q ss_pred CCceEEEEecCCCCccc-c---cChHHHHHHHHhcCCEEEEcCCCCcCCCC--cc-----CCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLA-V---ANIPELSRLAHDKGVTVVVDNTFSPLVLS--PA-----RLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~-~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~~-----~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|++++|+||||. + .++++|+++|+++|+++|+||+|+++... +. ....|++ |+||+++ +|.
T Consensus 182 ~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~ 258 (397)
T 2ord_A 182 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLG-GGV 258 (397)
T ss_dssp TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTS
T ss_pred cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccC-CCc
Confidence 89999999999999999 4 46889999999999999999999766432 11 1236766 6799998 589
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--Ccee--CCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVL--YPGL 206 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~--~p~~ 206 (324)
|+ |+++.+++++ .+..... ..++.++.+.+..+...+..... +...+++.++++++.+.|++.+ .... .+
T Consensus 259 r~-G~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-- 332 (397)
T 2ord_A 259 PI-GAVIVNERAN-VLEPGDH-GTTFGGNPLACRAGVTVIKELTK-EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVR-- 332 (397)
T ss_dssp CC-EEEEECSTTC-CCCTTSS-CCSSTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--
T ss_pred Ce-EEEEEchHhc-ccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEE--
Confidence 97 9998887765 4432111 11111122222222222222222 3456667888888888888752 2111 11
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
+.|.++++.+++.....++.+.+.. .|+ .+.|.
T Consensus 333 -----------------~~g~~~~~~~~~~~~~~~l~~~l~~---~gi-----------~v~~~---------------- 365 (397)
T 2ord_A 333 -----------------GMGLMIGIQFREEVSNREVATKCFE---NKL-----------LVVPA---------------- 365 (397)
T ss_dssp -----------------EETTEEEEEECTTSCHHHHHHHHHH---TTE-----------ECEEE----------------
T ss_pred -----------------EEeEEEEEEECChHHHHHHHHHHHH---CCC-----------EEccC----------------
Confidence 2467899999743335667777664 232 11111
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++++|+|++ ...++++++.+.++|+++
T Consensus 366 -~~~~iRis~~-~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 366 -GNNTIRFLPP-LTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp -TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1478999987 666666666666666544
No 155
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.89 E-value=1.3e-22 Score=186.50 Aligned_cols=253 Identities=17% Similarity=0.111 Sum_probs=167.9
Q ss_pred cCCCC-----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-c
Q 020548 12 CSSGG-----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-A 80 (324)
Q Consensus 12 ~~~gd-----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~ 80 (324)
.++|| +|+++.+.|+++...+. ..|.+++.++.+ |+++|++++ ++++++|++++| ||+|.+ .
T Consensus 148 ~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-----~~G~~vv~v~~~~~~~~d~~~L~~~i-~~~t~~v~~~~p-n~~G~~~~ 220 (474)
T 1wyu_B 148 EDRGEGRTRRVVLVPDSAHGSNPATAS-----MAGYQVREIPSGPEGEVDLEALKREL-GPHVAALMLTNP-NTLGLFER 220 (474)
T ss_dssp HHTTCTTTCCEEEEETTSCTHHHHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHC-STTEEEEEECSS-CTTSCCCT
T ss_pred HhcCCccCCCEEEEeCCcChhhHHHHH-----HCCCEEEEecCCCCCCcCHHHHHHhh-CCCceEEEEECC-CCCcccCC
Confidence 35888 99999999999998773 378888888865 899999999 788999999998 689998 6
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCC---CCccCCCCcEEEeCCccccccC-C---CeeEEEEEcChhHHHHHHH-hh--
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLV---LSPARLGADVVVHSISKFISGG-A---DIIAGAVCGPANLVNSMMD-LH-- 150 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~---~~~~~~~~d~~~~S~sK~~~~~-g---~r~~G~i~~~~~~~~~l~~-~~-- 150 (324)
++++|+++|+++|+++|+|++|.... ..+..+++|+++.|+||+|++| | .++ |+++.++++++.+.. ..
T Consensus 221 ~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~-G~~~~~~~l~~~l~~~~~~~ 299 (474)
T 1wyu_B 221 RILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGS-GPVGVKAHLAPYLPVPLVER 299 (474)
T ss_dssp THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCC-CCEEECGGGGGGCCSCEEEE
T ss_pred CHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCe-EEEEEcHHHHHhCCCCeeec
Confidence 99999999999999999999993322 2333457999999999999876 3 476 999999887766541 10
Q ss_pred hh--h----------hhccCCCCCHH---HHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 151 QG--A----------LMLLGPTMNPK---VAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 151 ~~--~----------~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
.+ + ........+.. .++..+. +.+.+.+..++..++++++.+.|++.++++..+.
T Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------- 371 (474)
T 1wyu_B 300 GEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDG-------- 371 (474)
T ss_dssp CSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS--------
T ss_pred cCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCC--------
Confidence 00 0 00011112222 2222222 1233555667788999999999998765542222
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
.....+++.++.......+.+.+.. .|+.. +...+. ...++.+|
T Consensus 372 ----------~~~~~~~~~~~~~~~~~~l~~~L~~---~Gi~~------------~~~~~~-----------~~~~~~lR 415 (474)
T 1wyu_B 372 ----------PSMHEFVAQPPEGFRALDLAKGLLE---LGFHP------------PTVYFP-----------LIVKEALM 415 (474)
T ss_dssp ----------SCCSCEEEBCSTTCCHHHHHHHHHH---TTCCC------------CEESCS-----------TTSTTCEE
T ss_pred ----------CcceEEEEEcCCCCCHHHHHHHHHH---CCccc------------cccccc-----------cccCCEEE
Confidence 0111144455322335567777664 23311 111100 01247899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|++ ..++++.++.+.++|+.+.
T Consensus 416 is~~-~~~t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 416 VEPT-ETEAKETLEAFAEAMGALL 438 (474)
T ss_dssp ECCC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEee-cCCCHHHHHHHHHHHHHHH
Confidence 9999 7767777777777776654
No 156
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.89 E-value=3.5e-22 Score=180.00 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=149.0
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce--eEEEecC------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
|+..++.+++++||+|++++|+|+++..... .. ...|. ....++. .|++++++++.+.++++|++++|+|
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~-~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~ 174 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-RV-NFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAY 174 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-TT-SHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSC
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHH-HH-HhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEecccc
Confidence 6788888889999999999999988742110 00 11333 3344421 3899999999434889999988999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCC-C----ccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-S----PARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~-~----~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
| ...|+++|.++|+++|+++|+|++|+. +.. . +.. ..|++++|+||+++ |++. ||++++ +++++.+.
T Consensus 175 ~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~--g~~~-G~~~~~~~~~~~~l~ 248 (407)
T 2dkj_A 175 P--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLR--GPRG-GLILSNDPELGKRID 248 (407)
T ss_dssp C--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGC--CCSC-EEEEESCHHHHHHHH
T ss_pred C--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCC--CCCc-eEEEECCHHHHHHHH
Confidence 7 678999999999999999999999954 421 1 122 37999999999775 5674 999998 79988887
Q ss_pred HhhhhhhhccCCCCCHHHH---HHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 148 DLHQGALMLLGPTMNPKVA---FELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
..... ...+++.+... ..++.. ...++...+++.++++++.+.|++.+.++..|.
T Consensus 249 ~~~~~---~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 308 (407)
T 2dkj_A 249 KLIFP---GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGG----------------- 308 (407)
T ss_dssp HHHTT---TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS-----------------
T ss_pred hhhcc---cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCC-----------------
Confidence 76542 22223333211 122222 234566777889999999999999876554321
Q ss_pred CCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 223 YGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 223 ~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
..++++++.++. ......+.+.+..
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
T 2dkj_A 309 -TDNHLFLVDLRPKGLTGKEAEERLDA 334 (407)
T ss_dssp -CSSSEEEEECGGGTCCHHHHHHHHHH
T ss_pred -CCceEEEEECcccCCCHHHHHHHHHH
Confidence 257789999863 1134556666653
No 157
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.89 E-value=2.6e-21 Score=175.09 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=181.7
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+++ |
T Consensus 68 ~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~ 138 (418)
T 2c81_A 68 TALMLALEALGIGEGDEVIVPSLTWIATATAVL-----NVNALPVFVDVEADTYCIDPQLIKSAI-TDKTKAIIPV---H 138 (418)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCHHHHGGGC-CTTEEEECCB---C
T ss_pred HHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-----HcCCEEEEEecCCCCCCcCHHHHHHhh-CCCCeEEEEe---C
Confidence 4788888888 8999999999999999998874 368888887754 799999999 7789998864 6
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CCc--cCCCCcEEEeCC--ccccccCCCeeEEEEEc-ChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSP--ARLGADVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~~--~~~~~d~~~~S~--sK~~~~~g~r~~G~i~~-~~~~~~~l~~ 148 (324)
|||...++++|.++|+++|+++|+|++|+.+. .+. ...-.|+++.|+ ||++++ | + +||++. ++++.+.+..
T Consensus 139 ~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~-g-~-~g~~~~~~~~l~~~~~~ 215 (418)
T 2c81_A 139 LFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTA-G-E-GGIIVTKNPRLFELIQQ 215 (418)
T ss_dssp CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS-S-S-CEEEEESCHHHHHHHHH
T ss_pred CcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCC-C-C-eEEEEECCHHHHHHHHH
Confidence 89999999999999999999999999995543 221 111236777777 999987 6 7 499988 4788888876
Q ss_pred hhhhhhh-----------cc---------C--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCC
Q 020548 149 LHQGALM-----------LL---------G--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPG 205 (324)
Q Consensus 149 ~~~~~~~-----------~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~ 205 (324)
...+... +. + ..+....++.....+..++...++..++++++.+.|++.+ .++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 295 (418)
T 2c81_A 216 LRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRP 295 (418)
T ss_dssp HHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC
T ss_pred HHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCC
Confidence 5432100 00 0 0023333333333445566777777888999999998873 3443222
Q ss_pred CCCCchhHHHHHHhccCCCcc-eEEEEEeCC----HHHHHHHHHHhhccccccccc--cccCCccceecccccccc--CC
Q 020548 206 LEDHPHHELLKSMANKEYGFG-GLLCLDMET----EEKANRLMNYLQNYAQFGFMA--VSLGYYETLMSCSGSSTS--SE 276 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~l~~----~~~~~~~~~~l~~~~~~g~~~--~~~g~~~~~~~~~~~~~~--~~ 276 (324)
.... ... .++.+.+++ ..+...+.+.|.. ++|+.. ++.|.. .....|..... ..
T Consensus 296 --~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~gI~~~~v~~~~~-p~~~~~~~~~~~~~~ 358 (418)
T 2c81_A 296 --PQVS------------RQTYYGYVFRFDPVKFGGLNADQFCEILRE--KLNMGTFYLHPPYL-PVHKNPLFCPWTKNR 358 (418)
T ss_dssp --TTEE------------ECCCSEEEEEECGGGTTTCCHHHHHHHHHH--HHTCCTTTEECCCC-CGGGCTTCCGGGCTT
T ss_pred --CCCc------------ccccEEEEEEEccccccccCHHHHHHHHHH--cCCCCccccccccc-ccccCchhccccccc
Confidence 0000 011 255577762 2245667777664 124320 333321 00000100000 00
Q ss_pred ------CCHHHHHhcCC------CCCeEEEEeccCCC-HHHHHHHHHHHHHhhhhc
Q 020548 277 ------LNAEEKALAGI------SAGLVRMSVGYLGT-LDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 277 ------~~~~~~~~~~~------~~~~iR~s~g~~~~-~~~~~~~l~~~l~~~~~~ 319 (324)
.+......... ..+.+|++++ ... ++++++.+.++|+++.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 359 YLKSVRKTEAYWRGLHYPVSERASGQSIVIHHA-ILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp SCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGG-GGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccCCChHHHHHHhCEEEecCC-ccCCCHHHHHHHHHHHHHHHHh
Confidence 00000000001 1268999999 888 888899999998887554
No 158
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.89 E-value=2e-22 Score=178.59 Aligned_cols=261 Identities=16% Similarity=0.100 Sum_probs=165.6
Q ss_pred chHHHHHHHccCCCCE--EEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~--vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+ |+++.+.|....... ... ...|.++..++.+ |+++++++ .+++++|++++|+||
T Consensus 74 ~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~~d~~~l~~~--~~~~~~v~~~~p~n~ 149 (359)
T 3pj0_A 74 MAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLK-ELQQITPLLLGTANQLLTIDDIKSL--REPVSSVLIELPQRE 149 (359)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHH-HHHCCEEEECSCTTSCCCHHHHHTC--SSCCSEEEEESSBGG
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHH-HhcCceEEecCCcCCCcCHHHHHhc--cCCceEEEEEecccC
Confidence 4677888888888887 444545444332110 000 1157788887754 89999887 578999999999999
Q ss_pred c-ccccChHH---HHHHHHhcCCEEEEcCCCCcCC-----CCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 76 T-LAVANIPE---LSRLAHDKGVTVVVDNTFSPLV-----LSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 76 t-G~~~~~~~---i~~l~~~~~~~~ivD~~~~~~~-----~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+ |.+.+.++ |+++|+++|+++|+|++|.... ..+ ...+.|+++.|+||++++++ +|++++++++++
T Consensus 150 ~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~l~~ 226 (359)
T 3pj0_A 150 IGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA---GAILAGNDDFVQ 226 (359)
T ss_dssp GTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS---CEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc---eEEEECCHHHHH
Confidence 8 68877554 5999999999999999973221 111 12367899999999998764 588899999999
Q ss_pred HHHHhhhhhhhccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCcee-CCCCCCCchhHHHHHHhc
Q 020548 145 SMMDLHQGALMLLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVL-YPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~p~~~~~~~~~~~~~~~~ 220 (324)
.+...... ..+. ......++. ...+.....+++++.++++++.+.|+++ +.++. .|.
T Consensus 227 ~~~~~~~~---~~~~~~~~~~~~~a~-~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--------------- 287 (359)
T 3pj0_A 227 EAKIWKRR---YGGDLISLYPYILSA-DYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVP--------------- 287 (359)
T ss_dssp HHHHHHHH---TTCCCSCCHHHHHHH-HHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSC---------------
T ss_pred HHHHHHHH---hCCCcchhHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCC---------------
Confidence 98875431 1111 122222221 1122222245566788899999999997 44553 333
Q ss_pred cCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 221 KEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
.++++++.++. ......+.+.+.. .|+ .+. |+..+. ....+++|++++
T Consensus 288 ----~~~~~~~~~~~~~~~~~~~l~~~l~~---~GV-~v~----------~g~~~~-----------~~~~~~~r~~i~- 337 (359)
T 3pj0_A 288 ----VSNMFHVYFENSADEIGAILTKIQDE---TGV-GIS----------GYLQEK-----------SADVCAFEVSVG- 337 (359)
T ss_dssp ----SSSEEEEEESSCHHHHHHHHHHHHHH---HCE-ECC----------SCCEEE-----------ETTEEEEEEECC-
T ss_pred ----cceEEEEEecCccchhHHHHHHHHHh---cCc-Eec----------CCcccc-----------CCCceEEEEEec-
Confidence 46688888873 2345667676664 333 222 221110 011368999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~ 318 (324)
........+.++++++.+.+
T Consensus 338 ~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 338 DAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp TTGGGSCHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHh
Confidence 66555555677777766643
No 159
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.89 E-value=7.1e-22 Score=176.18 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=184.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCC--ceEEEEecC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGR--TKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~--~~~v~~~~~ 72 (324)
+|+..++.++ ++|||+|+++.|+|.++...+. ..|.++++++.+ |++++++++.+++ +++|+ +
T Consensus 64 ~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~ 135 (377)
T 3ju7_A 64 LGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-----WCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---P 135 (377)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---C
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---E
Confidence 4778888887 8999999999999999988773 378888888754 8999999884445 89888 6
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCC---CCcEEEeCC--ccccccCCCeeEEEEE-cChhHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARL---GADVVVHSI--SKFISGGADIIAGAVC-GPANLVNS 145 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~---~~d~~~~S~--sK~~~~~g~r~~G~i~-~~~~~~~~ 145 (324)
+||+|...|+++|.++|+ +|+++|+|++|+ +........ ..|+.+.|+ +|++++ | . ||+++ .++++.+.
T Consensus 136 ~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~-g-~-gG~~~~~~~~l~~~ 211 (377)
T 3ju7_A 136 YATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGI-G-E-GGLIYSKNEEDIQR 211 (377)
T ss_dssp BCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCC-B-S-CEEEEESCHHHHHH
T ss_pred ECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCC-C-C-cEEEEECCHHHHHH
Confidence 789999999999999999 999999999983 222222222 257777775 699976 4 3 57775 46778888
Q ss_pred HHHhhhhhh--------hccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ce-eCCCCCCCchhHHH
Q 020548 146 MMDLHQGAL--------MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KV-LYPGLEDHPHHELL 215 (324)
Q Consensus 146 l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~-~~p~~~~~~~~~~~ 215 (324)
++....+.. ......+....++..+..+..++.+.++..++++++.+.|++.+. .+ ..|......
T Consensus 212 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~----- 286 (377)
T 3ju7_A 212 IKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAV----- 286 (377)
T ss_dssp HHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCB-----
T ss_pred HHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcc-----
Confidence 887655210 011234666776666666778888888999999999999998863 11 112211000
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccccc--CCCCHHHHHhcCCCCCeEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLVR 293 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~iR 293 (324)
...++.+.+++....+.+.+.|.. .|+ .++.+-....-..|....+ ..++.... +..+.+|
T Consensus 287 ---------~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~ 349 (377)
T 3ju7_A 287 ---------IQQFMPILCPEEVRNKQVIEDLKK---QKI-EARLYFSPSCHQQVLFRNYKSTDLTRTNK----IAKRIVS 349 (377)
T ss_dssp ---------CCSSEEEECCTTSCHHHHHHHHHT---TTB-CCBCTTSSCGGGSGGGTTSCBSCCHHHHH----HHHHEEE
T ss_pred ---------eEEEEEEEeCChhhHHHHHHHHHH---CCC-ceecccCCccccchhhhcCCCCCCHHHHH----HHhCEEE
Confidence 112446666642235667777764 343 3333321111111111111 01111111 1247899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|+++ ...++++++.+.+++.++-.
T Consensus 350 lp~~-~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 350 LPLW-EGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp ECCC-TTCCHHHHHHHHHHHTC---
T ss_pred CCCC-CCCCHHHHHHHHHHHHHHHh
Confidence 9999 88888888988888876643
No 160
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.88 E-value=8.8e-23 Score=181.17 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=163.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH--HHHhhhcCcccceeEEEecCC---------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH--ALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~--~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++.++++|||+|++.++.+.+.. ..++ . .| +++.++.+ |.++++ + ++++++|+++
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~----~-~g-~~~~v~~~~~~~~~~~~~~~~~~--i-~~~t~~v~~~ 149 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASKALKEAK----L-IG-DTHVAASSEASNYMTLPKLQEIQ--L-QDNAAYLHLT 149 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH----H-HS-CEEEEEECGGGTTCSCCCGGGCC--C-CTTEEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHH----H-hC-CeEEEecccccccccCCCHHHcc--c-CCCcCEEEEe
Confidence 5788899999999999998877655432 2332 2 56 66665432 333332 5 6789999999
Q ss_pred cCCCCcccc-cChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 71 SISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 71 ~~~nptG~~-~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+++||||.. .|+++| +|+++++|++|+.... +.++ ..|++++|+||++|++| + ||++.++++++.+.+
T Consensus 150 ~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~-~~~~~~~d~~~~s~~K~~g~~G--~-G~l~~~~~~~~~l~~ 219 (362)
T 2c0r_A 150 SNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR-PFDLNQFGLVYAGAQKNLGPSG--V-TVVIVREDLVAESPK 219 (362)
T ss_dssp SEETTTTEECSSCCCC------TTSCEEEECTTTTTSS-CCCGGGCSEEEEETTTTTCCSS--C-EEEEEEGGGSSSCCT
T ss_pred CCcCccceeccccccc------CCCEEEEEChhhccCC-ccchhHCcEEEEeccccccCcC--c-EEEEEcHHHHhhccc
Confidence 999999996 678776 7999999999843322 2222 24899999999998766 4 999998887665543
Q ss_pred hhhhh--------hhccCCCCCHH---HHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCC-C-ceeCCCCCCCchh
Q 020548 149 LHQGA--------LMLLGPTMNPK---VAFELSERIP---HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHH 212 (324)
Q Consensus 149 ~~~~~--------~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~p~~~~~~~~ 212 (324)
..... ......++... .+..++.... .++...+++.++++++.+.|++.+ . .+..+. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~---- 293 (362)
T 2c0r_A 220 HLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV--D---- 293 (362)
T ss_dssp TSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG--G----
T ss_pred cCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCh--H----
Confidence 11000 00111222322 2222232211 356677778999999999999987 4 443211 0
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
...+++++|.+++..+...+.+.|.. .|+ .+ .++.. . .+.+
T Consensus 294 ----------~~~~~~~~~~~~~~~~~~~~~~~L~~---~gi-~~----------~~g~~--------------~-~~~i 334 (362)
T 2c0r_A 294 ----------SRSDMNITFRLASEELEKEFVKASEQ---EGF-VG----------LKGHR--------------S-VGGL 334 (362)
T ss_dssp ----------GBCSSEEEEECSCHHHHHHHHHHHHH---TTE-ES----------CBCCT--------------T-TCSE
T ss_pred ----------HcCCcEEEEEcCCcchHHHHHHHHHH---CCC-ee----------ccCCC--------------C-CCEE
Confidence 01355788988765567788888764 343 21 11111 0 2569
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|+|++ ..+++++++.+.++|+.+.
T Consensus 335 Ris~~-~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 335 RASIY-NAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp EEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEECC-CCCCHHHHHHHHHHHHHHH
Confidence 99999 8878888888888887764
No 161
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.88 E-value=1.5e-21 Score=172.63 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=168.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH--HhhhcCcccceeEEEecCC----CHHHHHHhhhcC------CceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRACNITTTFVDIS----DHEMVNSAIVQG------RTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~--~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~------~~~~v~~ 69 (324)
+|+..++++++++||+|++++|+|+++... ++ . .|.++..++.+ |++++++++.+. ++++|++
T Consensus 77 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 77 QTNLIACSLALRPWEAVIATQLGHISTHETGAIE----A-TGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH----H-TTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh----c-CCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 578888888899999999999999998762 32 2 67888888765 699999998433 3899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcC--C---CCccC----CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL--V---LSPAR----LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~--~---~~~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++| ||||.+.| +++|+++|+++|+++|+|++|.++ . ..... ...|+++.|++|+.++ .. .|+++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~--~~-~g~l~ 227 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGM--FG-EALII 227 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCS--SC-EEEEE
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCC--Cc-eEEEE
Confidence 999 79999988 889999999999999999998332 1 11111 2578999999997433 33 39999
Q ss_pred cChhHHHHHHHhhhhhhhccCCC-CCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
.++++++.+.............. ........++.. ..++...+++.++++++.+.|+..+.++..|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----------- 295 (359)
T 1svv_A 228 LNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKD-NLFFELGAHSNKMAAILKAGLEACGIRLAWPS----------- 295 (359)
T ss_dssp CSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-----------
T ss_pred EcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhccCCeEEccCC-----------
Confidence 89888777765432110011111 111111112222 33556777789999999999954455544343
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
.++++++.++ ..+.+.+.. ++|+.. .+.. +..++++|+|+
T Consensus 296 --------~~~~~~~~~~-----~~~~~~l~~--~~gi~v-----------~~~~--------------~~~~~~iRi~~ 335 (359)
T 1svv_A 296 --------ASNQLFPILE-----NTMIAELNN--DFDMYT-----------VEPL--------------KDGTCIMRLCT 335 (359)
T ss_dssp --------SSSEECBEEE-----HHHHHHHTT--TEECEE-----------EEEE--------------TTTEEEEEEEC
T ss_pred --------ccceEEEEcC-----HHHHHHHHH--hcCEEE-----------Eecc--------------cCCCceEEEEc
Confidence 4667777774 245555553 124311 0000 01246899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 020548 297 GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+ ...++++++.+.++|+++-
T Consensus 336 ~-~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 336 S-WATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp C-TTCCHHHHHHHHHHHHHC-
T ss_pred c-CcCCHHHHHHHHHHHHHHH
Confidence 9 7777777777777776653
No 162
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.88 E-value=2.5e-22 Score=181.83 Aligned_cols=258 Identities=12% Similarity=0.119 Sum_probs=162.3
Q ss_pred chHHHHHHHccC-------CC-CEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~-------~g-d~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~~~ 65 (324)
+|+..+++++.. +| ++|++.+|+|++........... -....+..++..|+++|++++ +++++
T Consensus 125 eA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i-~~~~~ 203 (420)
T 2pb2_A 125 EANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVM-DDHTC 203 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHC-CTTEE
T ss_pred HHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHh-ccCce
Confidence 467777777654 67 59999999998754332111100 011125666667999999999 78899
Q ss_pred EEEEecCCCCcccc----cChHHHHHHHHhcCCEEEEcCCCCcCCCC--c-----cCCCCcEEEeCCccccccCCCeeEE
Q 020548 66 VLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 66 ~v~~~~~~nptG~~----~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-----~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
+|++++++|++|.. .++++|+++|+++|+++|+||+|.++... . .....|++ |+||+++ +|.|+ |
T Consensus 204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~-~G~~i-G 279 (420)
T 2pb2_A 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG-GGFPV-S 279 (420)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-E
T ss_pred EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc-CCCce-E
Confidence 99999999988862 46899999999999999999999666432 1 22356776 5899998 58997 9
Q ss_pred EEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--CceeCCCCCCCchh
Q 020548 135 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHH 212 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~p~~~~~~~~ 212 (324)
+++.++++++.+..... ..++.++.+.+.++...+..+.. +...++..++++++.+.|++.. .....
T Consensus 280 ~~~~~~~l~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------- 348 (420)
T 2pb2_A 280 AMLTTQEIASAFHVGSH-GSTYGGNPLACAVAGAAFDIINT-PEVLQGIHTKRQQFVQHLQAIDEQFDIFS--------- 348 (420)
T ss_dssp EEEECHHHHTTCC-----CCEECCCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCEE---------
T ss_pred EEEEhHHHHHhhcCCCc-CcccCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeE---------
Confidence 99998887766654222 11122222222222222322222 3556677888888888887752 11100
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHH--HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
...+.|.+++++++... ...++.+.+.. .|+ .+.|. .++
T Consensus 349 --------~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~---~Gi-----------~v~~~-----------------~~~ 389 (420)
T 2pb2_A 349 --------DIRGMGLLIGAELKPKYKGRARDFLYAGAE---AGV-----------MVLNA-----------------GAD 389 (420)
T ss_dssp --------EEEEETTEEEEEECGGGTTCHHHHHHHHHH---TTE-----------ECEES-----------------STT
T ss_pred --------EEEecceEEEEEECCCchHHHHHHHHHHHH---CCC-----------EEEeC-----------------CCC
Confidence 00125779999987432 35667777664 333 11111 147
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+|+|++ ...++++++.+.++|++
T Consensus 390 ~iRl~~~-~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 390 VMRFAPS-LVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp EEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH
Confidence 8999987 65555555555555544
No 163
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.88 E-value=3.4e-21 Score=174.43 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=138.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh-cCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|++........ ... .+..+.+++.+ |++++++++.++++++|++++|+|
T Consensus 105 ~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~ 183 (425)
T 3ecd_A 105 QANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSG-KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY 183 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC
T ss_pred HHHHHHHHHccCCCCEEEEcccccccceecchhhhhcc-cceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC
Confidence 4778888888999999999999998832111110 001 22344455443 899999999446899999998888
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCCC-----CccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~-----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
| ...++++|.++|+++|+++|+||+| .++.. .+.. ..|++++|+||+++ |++ +||++++ +++.+.+.
T Consensus 184 ~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~--g~~-~g~~~~~~~~~~~~~~ 257 (425)
T 3ecd_A 184 P--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLR--GPR-GGFVLTNDEEIAKKIN 257 (425)
T ss_dssp C--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGC--CCS-CEEEEESCHHHHHHHH
T ss_pred C--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccC--CCC-cEEEEeCCHHHHHHHH
Confidence 5 6788999999999999999999995 33321 2222 37899999999984 456 4999887 56777776
Q ss_pred HhhhhhhhccCCCCCHHHH--HHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 148 DLHQGALMLLGPTMNPKVA--FELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
...... ..++...+..+ ...+. ....+....++..++++++.+.|++.+..+..|.
T Consensus 258 ~~~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------ 317 (425)
T 3ecd_A 258 SAVFPG--LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG------------------ 317 (425)
T ss_dssp HHHC-------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------
T ss_pred hhhCcc--ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC------------------
Confidence 654311 11122222222 11221 1234556777888999999999999877654332
Q ss_pred CcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 224 GFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 224 ~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
+.+.++++.+++ ......+.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (425)
T 3ecd_A 318 TDNHLLLVDLRPKGLKGAQVEQALE 342 (425)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHH
Confidence 246688888862 123444555554
No 164
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.88 E-value=4.6e-21 Score=173.17 Aligned_cols=194 Identities=17% Similarity=0.158 Sum_probs=127.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|++++|+|+++..........-.+..+..++. .|++++++++.++++++|++++++|
T Consensus 98 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~-- 175 (417)
T 3n0l_A 98 QANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY-- 175 (417)
T ss_dssp HHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--
T ss_pred HHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--
Confidence 478888888999999999999999876542211100002334444443 3899999999436899999888776
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDL 149 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~ 149 (324)
|.+.++++|.++|+++|+++|+|+++ .+.. ..+.. +.|++++|+||+++ |++ +||++++ +++.+.+...
T Consensus 176 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~--g~~-~G~~~~~~~~~~~~~~~~ 251 (417)
T 3n0l_A 176 ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLR--GPR-GGIIMTNDEELAKKINSA 251 (417)
T ss_dssp CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTC--SCS-CEEEEESCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccC--CCC-eeEEEECCHHHHHHHhhh
Confidence 88999999999999999999999996 3332 11122 57999999999983 566 5999988 7888888766
Q ss_pred hhhhhhccCCCCCHHHHHH-HhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 150 HQGALMLLGPTMNPKVAFE-LSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.... ...++......+.. .+.. ...+..+.++..++++++.+.|++.+..+.
T Consensus 252 ~~~~-~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 306 (417)
T 3n0l_A 252 IFPG-IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLV 306 (417)
T ss_dssp HTTT-TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred hCCc-ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceec
Confidence 5411 11122222222211 1211 234566777788899999999999766544
No 165
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.88 E-value=1.5e-21 Score=180.35 Aligned_cols=265 Identities=12% Similarity=0.066 Sum_probs=171.0
Q ss_pred hHHHHHHHccCC--------CC-----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCC
Q 020548 3 AISSVLMQLCSS--------GG-----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGR 63 (324)
Q Consensus 3 ai~~~~~~~~~~--------gd-----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~ 63 (324)
|+..++.++..+ || +|+++.+.|.++...++ ..|++++.++.+ |++++++++ +++
T Consensus 129 a~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~ 202 (502)
T 3hbx_A 129 AIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR-----YFEVELKEVKLSEGYYVMDPQQAVDMV-DEN 202 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH-----HTTCEEEEECCBTTBCSCCHHHHHHHC-CTT
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH-----HcCceeEEEecCCCcCcCCHHHHHHHH-hhC
Confidence 455556555444 76 99999999999888773 378888888743 899999999 889
Q ss_pred ceEEEEecCCCCcccccChHHHHHHHHhc------CCEEEEcCCCCcCC----CCccC-----CCCcEEEeCCccccccC
Q 020548 64 TKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLV----LSPAR-----LGADVVVHSISKFISGG 128 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~~ivD~~~~~~~----~~~~~-----~~~d~~~~S~sK~~~~~ 128 (324)
+++|++++++||||.+.|+++|.++|+++ |+++++|++|+++. ..... .++|++..|+||+++++
T Consensus 203 t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p 282 (502)
T 3hbx_A 203 TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY 282 (502)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCC
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCC
Confidence 99999999999999999999999999999 99999999996442 22211 27899999999998664
Q ss_pred CCeeEEEE-EcChhHHHHHHHhhhhhh-------hccCCCCC--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 129 ADIIAGAV-CGPANLVNSMMDLHQGAL-------MLLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 129 g~r~~G~i-~~~~~~~~~l~~~~~~~~-------~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
. .+ |++ +.+++.+.........+. ...+.... ....+..+. +...+..++++..++++++.+.|++
T Consensus 283 ~-g~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 360 (502)
T 3hbx_A 283 A-GI-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360 (502)
T ss_dssp S-SC-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-Ce-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 43 655 555554422211111000 00011112 122222222 2334567778889999999999999
Q ss_pred CC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 197 LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 197 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
.+ +++..+. ...+++.|.+++. .+...+.+.|.. .|++. .....|...
T Consensus 361 ~~~~~~~~~~------------------~~~~~v~f~~~~~~~~~~~~l~~~L~~---~Gi~v-------~~~~~p~~~- 411 (502)
T 3hbx_A 361 TERFNIVSKD------------------EGVPLVAFSLKDSSCHTEFEISDMLRR---YGWIV-------PAYTMPPNA- 411 (502)
T ss_dssp TTCEEECSCS------------------SSSSEEEEEESSCSSCCHHHHHHHHHT---TTCBC-------CEEECCTTC-
T ss_pred CCCEEEEeCC------------------CCceEEEEEecCCCcCCHHHHHHHHHh---CCcEE-------eeccCCccc-
Confidence 87 4655441 1356899998742 234567777764 33311 111112110
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH----HHHHHHhhhh
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ----FEKALSRMQD 318 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~----l~~~l~~~~~ 318 (324)
.....+|++++ ...+.++++. |+++++.+.+
T Consensus 412 -------------~~~~~lRisv~-~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 412 -------------QHITVLRVVIR-EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp -------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------CCceEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11368999999 7655555544 4455555543
No 166
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-21 Score=181.19 Aligned_cols=260 Identities=12% Similarity=0.075 Sum_probs=174.2
Q ss_pred chHHHHHHHccC-----CC---CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEE
Q 020548 2 SAISSVLMQLCS-----SG---GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~-----~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v 67 (324)
+|+..++.++++ +| |+|+++.++|+++...++ ..|.+++.++.+ |+++|++++ ++++++|
T Consensus 137 ~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v 210 (497)
T 3mc6_A 137 ESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-----YFGMKLRHVELDPTTYQVDLGKVKKFI-NKNTVLL 210 (497)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-----HSCCEEEEECBCTTTCSBCTTTTGGGC-CSSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-----HcCCeEEEEecCcccCcCCHHHHHHHH-hhCCEEE
Confidence 466777776654 56 899999999999988884 368888887653 589999999 7889999
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--------------CCccCCCCcEEEeCCccccccCCCeeE
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--------------LSPARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--------------~~~~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
++++|+||||.+.|+++|+++|+++|+++|+|++|+++. .+....++|+++.|+||++++ +.++
T Consensus 211 ~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~- 288 (497)
T 3mc6_A 211 VGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFA-PKGS- 288 (497)
T ss_dssp EEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCC-CSSC-
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCC-CCCc-
Confidence 999999999999999999999999999999999995331 112234789999999998754 4554
Q ss_pred EEEEcChhHHHHHHHhhh-hh-hhc-cCCC-----CC--HHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhC--CC
Q 020548 134 GAVCGPANLVNSMMDLHQ-GA-LML-LGPT-----MN--PKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKL--GL 199 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~-~~-~~~-~~~~-----~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 199 (324)
|+++.+++.+........ .+ ... ...+ .. ....+..+.. ...+.+..++..++++++.+.|++. ++
T Consensus 289 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~ 368 (497)
T 3mc6_A 289 SVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDL 368 (497)
T ss_dssp EEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred eeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 888877655443321111 00 000 0001 11 1122222222 2335567778889999999999995 55
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCH
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 279 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 279 (324)
.+..+. .++++.|..++ .+...+.+.|.. .|+ .++.
T Consensus 369 ~~~~~~-------------------~~~~v~~~~~~-~~~~~l~~~L~~---~Gi-~v~~-------------------- 404 (497)
T 3mc6_A 369 DIMGNP-------------------RYSVISFSSKT-LNIHELSDRLSK---KGW-HFNA-------------------- 404 (497)
T ss_dssp EECSCC-------------------CSSEEEEECTT-TTHHHHHHHHHT---TTC-BCEE--------------------
T ss_pred EEecCC-------------------CeeEEEEeCCC-CCHHHHHHHHHh---CCE-EEec--------------------
Confidence 554332 46688888753 245667777764 232 1110
Q ss_pred HHHHhcCCCCCeEEEEec--cCCCHHHHHHHHHHHHHhhhhc
Q 020548 280 EEKALAGISAGLVRMSVG--YLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 280 ~~~~~~~~~~~~iR~s~g--~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+..+..+|+++. ..++.++.++.|.++++.+.+.
T Consensus 405 ------~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 405 ------LQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp ------CCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred ------CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 011245788876 1456777788888888776543
No 167
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.88 E-value=1.7e-21 Score=177.25 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=165.4
Q ss_pred chHHHHHHHcc---------CCC-CEEEEcCCCchhHHH-HHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcC
Q 020548 2 SAISSVLMQLC---------SSG-GHVVAARTLYGGTHA-LLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQG 62 (324)
Q Consensus 2 ~ai~~~~~~~~---------~~g-d~vl~~~p~y~~~~~-~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~ 62 (324)
+|+..++..+. .+| |+|++.+|.|++... .+. .... .....+..++.+|+++++++++++
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~ 222 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS-SSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP 222 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHT-TCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhh-cCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCC
Confidence 46666666543 357 899999999987543 332 1100 001345667777999999999446
Q ss_pred CceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCC-C
Q 020548 63 RTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-D 130 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g-~ 130 (324)
++++|++++.+|++|.+. ++++|+++|++||+++|+||+|.++... ......|++ |+||.+++ | .
T Consensus 223 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G~~ 299 (439)
T 2oat_A 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLY 299 (439)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSS
T ss_pred CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC-CCC
Confidence 789999998888899875 7999999999999999999999666421 112346766 78999986 7 8
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
|+ |++++++++++.+..... ..++ +..+..++.+...++.+. ...++..++++++.+.|++.+..+..
T Consensus 300 ~~-G~v~~~~~~~~~l~~~~~-~~t~---~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~----- 369 (439)
T 2oat_A 300 PV-SAVLCDDDIMLTIKPGEH-GSTY---GGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVT----- 369 (439)
T ss_dssp CC-EEEEECHHHHTTSCTTSS-CCSS---TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCTTTEE-----
T ss_pred Ce-EEEEECHHHHhccCCCCc-ccCC---CcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCCCcE-----
Confidence 96 999999888776654322 1112 223333332222222222 34566788889999999876432110
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
...+.|.++++.++.. .....+.+.+.. .|++. .|.
T Consensus 370 ------------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~---~Gv~v-----------~~~---------------- 407 (439)
T 2oat_A 370 ------------AVRGKGLLNAIVIKETKDWDAWKVCLRLRD---NGLLA-----------KPT---------------- 407 (439)
T ss_dssp ------------EEEEETTEEEEEECCCSSCCHHHHHHHHHH---TTEEC-----------CBS----------------
T ss_pred ------------EEEeeeeEEEEEEecCccHHHHHHHHHHHH---CCeEE-----------ecC----------------
Confidence 0013578999998742 234567776663 23311 110
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++.+|++++ ...++++++.+.++|+++
T Consensus 408 -~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 408 -HGDIIRFAPP-LVIKEDELRESIEIINKT 435 (439)
T ss_dssp -SSSEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECc-cCCCHHHHHHHHHHHHHH
Confidence 1478999998 766676666666666554
No 168
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.88 E-value=1.6e-21 Score=177.22 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=156.9
Q ss_pred chHHHHHHHcc---------CCC-CEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCC
Q 020548 2 SAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai~~~~~~~~---------~~g-d~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~ 63 (324)
+|+..+++.+. .+| |+|++.+|+|++........... .....+..++..|++++++++++++
T Consensus 133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~ 212 (433)
T 1z7d_A 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPN 212 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCC
Confidence 45666666532 467 99999999998864422111000 0013456666779999999994467
Q ss_pred ceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCC-Ce
Q 020548 64 TKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DI 131 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g-~r 131 (324)
+++|++++.+|++|.+. ++++|+++|+++|+++|+||+|.++... ......|++ |+||.+++ | .|
T Consensus 213 ~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ 289 (433)
T 1z7d_A 213 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSG-GHYP 289 (433)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSC
T ss_pred EEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccC-CCCC
Confidence 89999998888899875 6899999999999999999999666321 112346766 68999984 8 89
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhC--CCceeCCCCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKL--GLKVLYPGLE 207 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~ 207 (324)
+ |++++++++++.+..... ....+..+..++.+...++.+. ...++..++++++.+.|++. +.....
T Consensus 290 ~-G~v~~~~~~~~~l~~~~~----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~---- 360 (433)
T 1z7d_A 290 I-SAVLANDDIMLVIKPGEH----GSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVR---- 360 (433)
T ss_dssp C-EEEEECHHHHTTCCTTCC----CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEE----
T ss_pred e-EEEEECHHHHhhhccccc----cccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeE----
Confidence 6 999999988776654222 1111223333322222222222 34566677888888888765 321110
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCH-HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
...+.|.++++.++.. .....+.+.+.. .|++ +.|.
T Consensus 361 -------------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~---~Gv~-----------v~~~---------------- 397 (433)
T 1z7d_A 361 -------------DVRGKGLLCAIEFKNELVNVLDICLKLKE---NGLI-----------TRDV---------------- 397 (433)
T ss_dssp -------------EEEEETTEEEEEECTTTCCHHHHHHHHHH---TTEE-----------CCEE----------------
T ss_pred -------------EEEeeeeEEEEEEccChhHHHHHHHHHHH---CCeE-----------EecC----------------
Confidence 0013578999999742 235567777663 2331 1111
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++.+|++++ ...++++++.+.++|+++
T Consensus 398 -~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 398 -HDKTIRLTPP-LCITKEQLDECTEIIVKT 425 (433)
T ss_dssp -TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1478999998 766666666655555443
No 169
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.88 E-value=1.5e-21 Score=175.30 Aligned_cols=255 Identities=14% Similarity=0.146 Sum_probs=161.1
Q ss_pred chHHHHHHHcc-------CCCCEEEEcCCCchhHHHHHhhhcC--------cccceeEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLC-------SSGGHVVAARTLYGGTHALLTHFFP--------RACNITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~-------~~gd~vl~~~p~y~~~~~~~~~~~~--------~~~g~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++..+. .++|+|++.+|.|++.......... ...+..+..++.+|++++++++ ++++++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~ 182 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV-NEKTCA 182 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC-CTTEEE
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhc-cCCeEE
Confidence 35666666554 3579999999999876433221110 0123466777778999999999 788999
Q ss_pred EEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++|++|.+.+ +++|+++|++||+++|+||+|.++... ......|++ |+||.+++ |.|+ |+
T Consensus 183 v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~ 258 (395)
T 3nx3_A 183 IILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GA 258 (395)
T ss_dssp EEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EE
T ss_pred EEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC-CCce-EE
Confidence 999999999999876 999999999999999999999766321 112235555 58899987 8997 99
Q ss_pred EEcChhH-HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHh----CCCceeCCCCCC
Q 020548 136 VCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKK----LGLKVLYPGLED 208 (324)
Q Consensus 136 i~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~~~~~~p~~~~ 208 (324)
+++++++ .+.+.+... .......+..++.+...++.+ +...++..++.+++.+.|++ ++.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 330 (395)
T 3nx3_A 259 FVINQKVASNSLEAGDH----GSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRK---- 330 (395)
T ss_dssp EEECHHHHHHHSCTTCC----SSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE----
T ss_pred EEEchhhhhhhcCCccc----CCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE----
Confidence 9999988 777654432 111222232222222222211 22334444455555555544 33211111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
+.|.++++.+++......+.+.+.. .|+. ..+. .
T Consensus 331 ---------------~~g~~~~~~~~~~~~~~~~~~~l~~---~Gi~-----------v~~~-----------------~ 364 (395)
T 3nx3_A 331 ---------------GLGFMQGLSLDKSVKVAKVIQKCQE---NALL-----------LISC-----------------G 364 (395)
T ss_dssp ---------------EETTEEEEEECTTSCHHHHHHHHHH---TTEE-----------CEEE-----------------T
T ss_pred ---------------eEEEEEEEEeCCcchHHHHHHHHHH---CCCE-----------EecC-----------------C
Confidence 2577999999754346677777664 3331 1111 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++++|++++ ...++++++.+.++|+.+
T Consensus 365 ~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 391 (395)
T 3nx3_A 365 ENDLRFLPP-LILQKEHIDEMSEKLRKA 391 (395)
T ss_dssp TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 478999988 766666666666666554
No 170
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.88 E-value=1.3e-21 Score=176.92 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=138.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|+++....... ...| .....++. .|++++++++.+.++++|++++|+|
T Consensus 103 ~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~ 180 (420)
T 3gbx_A 103 QANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPV--NFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAY 180 (420)
T ss_dssp HHHHHHHHHHCCTTCEEEEEEEC--------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTC
T ss_pred HHHHHHHHHhcCCCCEEEecchhhcceeccchhh--hhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCcc
Confidence 4678888888999999999999998754221110 0122 22222221 4899999999444699999998888
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh---hHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLVNS 145 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---~~~~~ 145 (324)
| ...++++|+++|+++|+++|+||+| .++. ..... .+|++++|+||+++++ + |||+++++ ++.+.
T Consensus 181 ~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~--~-gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 181 S--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGP--R-GGLILAKGGDEELYKK 254 (420)
T ss_dssp C--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSC--S-CEEEEESSCCHHHHHH
T ss_pred C--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCC--C-ceEEEEcCCcHHHHHH
Confidence 6 4788999999999999999999997 3332 12222 4899999999999643 3 59999887 77777
Q ss_pred HHHhhhhhhhccCCCCCHHHH--HHHh-cC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 146 MMDLHQGALMLLGPTMNPKVA--FELS-ER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
+...... . ..++.+....+ ...+ .. ...+....+++.++++++.+.|++.+..+..+.
T Consensus 255 ~~~~~~~-~-~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------- 316 (420)
T 3gbx_A 255 LNSAVFP-S-AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG---------------- 316 (420)
T ss_dssp HHHHHC------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS----------------
T ss_pred hhhhcCC-C-CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC----------------
Confidence 7654431 1 12222222211 1122 22 234566778889999999999999777654322
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 222 EYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 222 ~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
..++++++.+.+ ......+.+.+.
T Consensus 317 --~~~~~~~~~~~~~~~~~~~~~~~l~ 341 (420)
T 3gbx_A 317 --TENHLFLLDLVDKNLTGKEADAALG 341 (420)
T ss_dssp --CSSSEEEEECGGGTCCHHHHHHHHH
T ss_pred --CCCeEEEEEcCCCCCCHHHHHHHHH
Confidence 146688888752 122444445554
No 171
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.88 E-value=4.7e-21 Score=170.62 Aligned_cols=276 Identities=16% Similarity=0.168 Sum_probs=179.7
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+++++
T Consensus 58 ~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~- 130 (375)
T 2fnu_A 58 SALLTLYRNFSEFSADRNEIITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSVDY- 130 (375)
T ss_dssp HHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEECG-
T ss_pred HHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHH-----HCCCEEEEeccCCCCCCCHHHHHhhc-CcCceEEEEeCC-
Confidence 5788899998 8999999999999999998874 268888888764 788999988 778999888765
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CCccCCC--CcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~~~~--~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
||.+.|+++|.++|+++|+++|+|++|+... ......+ .|+++.|+| |++++ | +||+++.+ +++.+.+.
T Consensus 131 --tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~ 205 (375)
T 2fnu_A 131 --AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMK 205 (375)
T ss_dssp --GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHH
T ss_pred --cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHH
Confidence 9999999999999999999999999984332 1111121 378888887 99965 5 33444534 77888887
Q ss_pred Hhhhhhh----------hccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHH
Q 020548 148 DLHQGAL----------MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHEL 214 (324)
Q Consensus 148 ~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~ 214 (324)
....+.. ...+ ..+.+..++..+.....++...++..++++++.+.|++.+ ..+..|.-.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~------- 278 (375)
T 2fnu_A 206 LFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLK------- 278 (375)
T ss_dssp HHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS-------
T ss_pred HHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC-------
Confidence 6543110 0011 1355555554443455677778888999999999999874 344322100
Q ss_pred HHHHhccCCCcceEEEEEeCCH-H-HHHHHHHHhhccccccccccccCCccceecccccc--ccC------CCCHHHHHh
Q 020548 215 LKSMANKEYGFGGLLCLDMETE-E-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS--TSS------ELNAEEKAL 284 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~-~-~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~--~~~------~~~~~~~~~ 284 (324)
..+.+.++++.++.. . +...+.+.|.. .|+ .++.+ + .|... ... ..+...
T Consensus 279 -------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gi-~v~~~-~-----~p~~~~~~~~~~~~~~~~~~~~--- 338 (375)
T 2fnu_A 279 -------DKSSNHLYPILMHQKFFTCKKLILESLHK---RGI-LAQVH-Y-----KPIYQYQLYQQLFNTAPLKSAE--- 338 (375)
T ss_dssp -------SCCCCSCEEEEECGGGGGGHHHHHHHHHH---TTE-ECBCC-C-----CCGGGSHHHHHHHCCCCCHHHH---
T ss_pred -------CCcceEEEEEEeCccccchHHHHHHHHHH---CCC-Ccccc-c-----cccccchhhhcCCCccCChHHH---
Confidence 001334667777632 2 46677777764 343 22211 1 11100 000 000000
Q ss_pred cCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 285 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 285 ~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
....+.+|+|++ ..+++++++.+.++|+.+-+
T Consensus 339 -~~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 339 -DFYHAEISLPCH-ANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp -HHHHHEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHhCEEEecCC-CCCCHHHHHHHHHHHHHHHH
Confidence 011368999999 88888888888888876643
No 172
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.87 E-value=1.4e-21 Score=179.91 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=130.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhc---Ccccc--eeEEEe--cC----CCHHHHHHhhhcCCceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF---PRACN--ITTTFV--DI----SDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~---~~~~g--~~~~~~--~~----~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
|+..++.++++|||+|++++++|+++...+.... -...| .....+ +. .|+++|++++.++++++|++ +
T Consensus 122 an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~ 200 (483)
T 1rv3_A 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-G 200 (483)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-C
T ss_pred HHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-e
Confidence 5666688889999999999999988764331100 01122 344444 21 28999999993378999999 8
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh----
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN---- 141 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~---- 141 (324)
++|++ .+.|+++|+++|+++|+++++|++|. ++. ..+.. ++|++++|+||+++ |+| +|+++.+++
T Consensus 201 ~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~--Gpr-gG~i~~~~~~~~~ 275 (483)
T 1rv3_A 201 TSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLR--GCR-AGMIFYRRGVRSV 275 (483)
T ss_dssp CSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGC--CCS-CEEEEEECSBCC-
T ss_pred CCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCC--CCC-ceEEEEcchhhhh
Confidence 89988 88999999999999999999999973 332 12222 68999999999985 456 599988764
Q ss_pred -----------HHHHHHHhhhhhhhccCCC-CCHHHHH-HHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 142 -----------LVNSMMDLHQGALMLLGPT-MNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 142 -----------~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
+.+.+.....+ . ..++. .....+. .++.. ...++.+.+++.++++++.+.|++.++++..|
T Consensus 276 ~~~~g~~~~y~~~~~~~~~~~~-~-~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 351 (483)
T 1rv3_A 276 DPKTGKEILYNLESLINSAVFP-G-LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG 351 (483)
T ss_dssp ------CCBCCHHHHHHHHHTT-T-TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred ccccCcchhhHHHHHhhhhcCC-c-ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccC
Confidence 33344332211 1 12222 2222211 12222 23456777888999999999999988766543
No 173
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.87 E-value=3.5e-21 Score=174.90 Aligned_cols=282 Identities=17% Similarity=0.106 Sum_probs=158.7
Q ss_pred chHHHHHHHcc--------CCCCEEEEcCCCchhH-------------HHHHhhhcCcccceeEEEecCC------CHHH
Q 020548 2 SAISSVLMQLC--------SSGGHVVAARTLYGGT-------------HALLTHFFPRACNITTTFVDIS------DHEM 54 (324)
Q Consensus 2 ~ai~~~~~~~~--------~~gd~vl~~~p~y~~~-------------~~~~~~~~~~~~g~~~~~~~~~------d~~~ 54 (324)
+|+..++.+++ ++||+|+++.|+|+.+ ...+..+... .|.++..++.+ |+++
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~ 167 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVED-QVAEVTFVPVSKVNGQVEVED 167 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHT-TSCEEEEECCCTTTSSCCHHH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHh-cCcEEEEEecCcccCCcCHHH
Confidence 46777777765 5899888888888653 2223222222 57888888752 7999
Q ss_pred HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC----------CEEEEcCCCCcCCC--CccCCCCcEEEeCCc
Q 020548 55 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG----------VTVVVDNTFSPLVL--SPARLGADVVVHSIS 122 (324)
Q Consensus 55 l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~----------~~~ivD~~~~~~~~--~~~~~~~d~~~~S~s 122 (324)
|++++ ++++++|++++|+||||.+.|+++|.++|+++| +++|+|++|+.... +....+.|+++.|+|
T Consensus 168 l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~ 246 (432)
T 3a9z_A 168 ILAAV-RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGH 246 (432)
T ss_dssp HHHTC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGG
T ss_pred HHHhc-cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehh
Confidence 99999 778999999999999999999999999999999 99999999943321 112237899999999
Q ss_pred cccccCCCeeEEEEEcChhH-HHHHHHhhhh---hhhccCCCCCHHHHHH---HhcCc-ccHHHHHHHHHHHHHHHHHHH
Q 020548 123 KFISGGADIIAGAVCGPANL-VNSMMDLHQG---ALMLLGPTMNPKVAFE---LSERI-PHLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~~-~~~l~~~~~~---~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~L 194 (324)
|++| .++ ||++.+++. ...+.+...+ ......++........ ++... ..++...+++.++++++.+.|
T Consensus 247 K~~g---~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L 322 (432)
T 3a9z_A 247 KFYG---PRI-GALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERL 322 (432)
T ss_dssp GTTC---CSC-EEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC---Ccc-eEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9874 344 999888765 2222211100 0001122223222211 22211 234556667788899999999
Q ss_pred HhC-CCceeCCCC-CCCchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 195 KKL-GLKVLYPGL-EDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 195 ~~~-~~~~~~p~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
++. +..+..+.- +.. ...+++++|.+++ ......+.+.+.. +.++.|..+... .+..
T Consensus 323 ~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~------i~~~~G~~~~~~-~~~~ 382 (432)
T 3a9z_A 323 EAEFGKRIHLNSRFPGV-------------ERLPNTCNFSIQGSQLRGYMVLAQCQT------LLASVGASCHSD-HEDR 382 (432)
T ss_dssp HHHHGGGEEESSCCTTC-------------CBCTTEEEEEECSTTCCHHHHHHHCSS------EECBSSCGGGGG-GTTS
T ss_pred HhccCCcEEEeCCCCcc-------------cCCCCEEEEEeCCCCCcHHHHHHHhcC------eEEeccccccCC-CCCC
Confidence 885 443331110 000 0135578888874 1123445555431 233333322110 0000
Q ss_pred cccCCCCHHHHHhcCCC----CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
........|.. ++++|+|++ ..+++++++.+.++|+.+
T Consensus 383 ------~~~~l~~~g~~~~~~~~~iRis~~-~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 383 ------PSPVLLSCGIPVDVARNAVRLSVG-RSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp ------CCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ------ccHHHHhcCCCccccCceEEEEcC-CCCCHHHHHHHHHHHHHH
Confidence 00111222332 479999999 776666666666666554
No 174
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.87 E-value=3.2e-22 Score=177.33 Aligned_cols=252 Identities=12% Similarity=0.071 Sum_probs=163.1
Q ss_pred chHHHHHHHccCC---CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHH-hhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~---gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~-~l~~~~~~~v~~~~ 71 (324)
+|+..++.+++.+ ||.|+++.++|..... ++ . .| +++.++.+ |++++++ ++ ++++++|++++
T Consensus 78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~-~~----~-~g-~~~~v~~~~~~~~~d~~~l~~~~i-~~~~k~v~~~~ 149 (360)
T 1w23_A 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALKE-AK----L-LG-ETHIAASTKANSYQSIPDFSEFQL-NENDAYLHITS 149 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHH-HH----T-TS-EEEEEEECGGGTSCSCCCGGGCCC-CTTEEEEEEES
T ss_pred HHHHHHHHHhcCCCCcccEEEecchhHHHHHH-HH----H-hC-CeEEeecccccCcCCccchHhhcc-CCCCCEEEEeC
Confidence 4677778888765 5677777777765332 21 3 67 77777642 6778888 78 78899999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|+||||.+.+ + +++++|+++|+|++|+.+.. +... ..|++++|+||+++++| + ||++.++++++.+....
T Consensus 150 ~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~-~~~~~~~di~~~s~sK~~~~~G--~-G~~~~~~~~~~~~~~~~ 220 (360)
T 1w23_A 150 NNTIYGTQYQ--N---FPEINHAPLIADMSSDILSR-PLKVNQFGMIYAGAQKNLGPSG--V-TVVIVKKDLLNTKVEQV 220 (360)
T ss_dssp EETTTTEECS--S---CCCCCSSCEEEECTTTTTSS-CCCGGGCSEEEEETTTTTSCTT--C-EEEEEEHHHHCSCCTTC
T ss_pred CCCCcceecc--c---ccccCCceEEEechhhcCCC-CcCcccCCEEEEEcccccCCCC--c-EEEEEcHHHHhhcccCC
Confidence 9999999976 3 33389999999999854332 1122 23899999999998665 4 99999888776554432
Q ss_pred hhhh--------hccCCCCCHHHHH---HHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCC-C-ceeC-CCCCCCchhH
Q 020548 151 QGAL--------MLLGPTMNPKVAF---ELSERIP---HLGLRMKEHCHRALIFARRMKKLG-L-KVLY-PGLEDHPHHE 213 (324)
Q Consensus 151 ~~~~--------~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~-p~~~~~~~~~ 213 (324)
.+.. ....+++...... ..+..+. .++...+++.++++++.+.|++.+ . .... |.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------- 292 (360)
T 1w23_A 221 PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG-------- 292 (360)
T ss_dssp CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG--------
T ss_pred cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch--------
Confidence 1000 0111233322221 1222111 355667778999999999999876 2 2211 21
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
...+.++++.+++.....++.+.+.. .|+ .+ .++.. .++++|
T Consensus 293 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~~----------~~~~~---------------~~~~iR 334 (360)
T 1w23_A 293 ---------SRSLMNVTFNLRNEELNQQFLAKAKE---QGF-VG----------LNGHR---------------SVGGCR 334 (360)
T ss_dssp ---------GBCSSEEEEECSSHHHHHHHHHHHHH---TTE-ES----------CBCCT---------------TTCSEE
T ss_pred ---------hccCcEEEEEcCCCccHHHHHHHHHH---CCe-ee----------ecCCC---------------CCCeEE
Confidence 01345899999865556778777664 333 11 11110 147899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|++ ..+++++++.+.++|+.+.
T Consensus 335 is~~-~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 335 ASIY-NAVPIDACIALRELMIQFK 357 (360)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEec-CCCCHHHHHHHHHHHHHHH
Confidence 9999 8888888888888887664
No 175
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.87 E-value=4.4e-21 Score=173.87 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=155.3
Q ss_pred chHHHHHH---HccCCCCEEEEcCCCchhHHHHHhhhcCc------ccce---eEEEecCC----------CHHHHHHhh
Q 020548 2 SAISSVLM---QLCSSGGHVVAARTLYGGTHALLTHFFPR------ACNI---TTTFVDIS----------DHEMVNSAI 59 (324)
Q Consensus 2 ~ai~~~~~---~~~~~gd~vl~~~p~y~~~~~~~~~~~~~------~~g~---~~~~~~~~----------d~~~l~~~l 59 (324)
+|+..+++ +++++| +|++.+|+|+++.......... .++. .+..++.+ |++++++++
T Consensus 113 ~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l 191 (426)
T 1sff_A 113 EAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF 191 (426)
T ss_dssp HHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHH
Confidence 46777766 667776 8999999998754322111100 0110 13334432 688999988
Q ss_pred hc----CCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCcc
Q 020548 60 VQ----GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISK 123 (324)
Q Consensus 60 ~~----~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK 123 (324)
++ +++++|++++ ++| ||...+ +++|.++|+++|+++|+||+|+++.... .....|++ |+||
T Consensus 192 ~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK 268 (426)
T 1sff_A 192 KNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAK 268 (426)
T ss_dssp HHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECG
T ss_pred HhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcc
Confidence 42 5788888865 667 997766 9999999999999999999997664211 11235554 7899
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCC--C
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLG--L 199 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~--~ 199 (324)
++++ |.|+ ||+++++++++.+..... ....+.+....+.+...++.+. ...++..++++++.+.|++.+ .
T Consensus 269 ~~~~-Glri-G~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 342 (426)
T 1sff_A 269 SIAG-GFPL-AGVTGRAEVMDAVAPGGL----GGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKH 342 (426)
T ss_dssp GGGT-SSCC-EEEEEEHHHHTTSCTTSB----CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccC-CCce-EEEEEcHHHHhhhccCCc----CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9987 9997 999999888776653222 1112223222222221222221 244556777788888877642 1
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
...... .+.|.++++.+. .......+.+.+.. .|+ . +.|+.
T Consensus 343 ~~~~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~gi-~----------v~~~~ 391 (426)
T 1sff_A 343 PEIGDV-----------------RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD---KGL-I----------LLSCG 391 (426)
T ss_dssp TTEEEE-----------------EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH---TTE-E----------CEEES
T ss_pred CCeEEE-----------------EEEEEEEEEEEecCccccCCChHHHHHHHHHHHH---CCc-E----------EecCC
Confidence 110000 024779999984 23456677777664 233 1 12211
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
. .++++|+|++ ...+++.++.+.++|+++
T Consensus 392 ~---------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 392 P---------------YYNVLRILVP-LTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp T---------------TSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred C---------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 0 1478999998 666666666555555443
No 176
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.87 E-value=1.7e-20 Score=170.07 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=135.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..+++++. +||+|++++|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+++ ||
T Consensus 78 ~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~ 147 (424)
T 2po3_A 78 AGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-----WIGLTPVFADIDPDTGNLDPDQVAAAV-TPRTSAVVGV---HL 147 (424)
T ss_dssp HHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTSSBCHHHHGGGC-CTTEEEEEEE---CG
T ss_pred HHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHhh-CcCCcEEEEE---CC
Confidence 47788888764 79999999999999988773 368888887754 899999999 7789999985 48
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ 151 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~ 151 (324)
||...++++|.++|+++|+++|+|++|+ ++..+. .....|++++|+||..+.++++. ||++.+ +++++.+.....
T Consensus 148 tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~~~~-G~~v~~~~~l~~~l~~~~~ 226 (424)
T 2po3_A 148 WGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAFEG-GAVVTDDADLAARIRALHN 226 (424)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHHB
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccCCCC-eEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999995 454322 22225899999994333444684 999988 788888876544
Q ss_pred hhhh--c----c--CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 152 GALM--L----L--GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 152 ~~~~--~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
.... . . ...+.+..++..+..+..++...++..++++++.+.|++.
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 280 (424)
T 2po3_A 227 FGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADL 280 (424)
T ss_dssp TTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred cCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1100 0 0 1133455555544444455566666677788888888776
No 177
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.87 E-value=3.7e-20 Score=166.21 Aligned_cols=282 Identities=12% Similarity=0.066 Sum_probs=181.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC--CceEEEEecCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~--~~~~v~~~~~~ 73 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++.+. ++++|++++
T Consensus 58 ~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~-- 130 (394)
T 1o69_A 58 AALHLALRVAGVKQDDIVLASSFTFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH-- 130 (394)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC--
T ss_pred HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC--
Confidence 5788889998 8999999999999999988874 268888888753 899999998332 789999885
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCcc---C-CCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPA---R-LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~---~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
|+|...++++|.++|+++|+++|+|++|+ ++..... . .+.|+..+|.+|.+++ .++ |+++.+ +++++.+.
T Consensus 131 -~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~--~~~-G~~~~~~~~l~~~l~ 206 (394)
T 1o69_A 131 -LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITT--SGG-GMLIGKNKEKIEKAR 206 (394)
T ss_dssp -GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC--SSC-EEEEESCHHHHHHHH
T ss_pred -CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCC--CCc-eEEEECCHHHHHHHH
Confidence 89999999999999999999999999995 5433221 1 1456666666888754 464 999985 78888887
Q ss_pred HhhhhhhhccCCC-----------CCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 148 DLHQGALMLLGPT-----------MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 148 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
....+. ....+. +....++..+..++.++..+++..++++++.+.|++. .++. +... ...
T Consensus 207 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~-~~~----- 277 (394)
T 1o69_A 207 FYSTQA-RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-FSFL-DELE-NSR----- 277 (394)
T ss_dssp HHTBTC-CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-EECC-CCCT-TEE-----
T ss_pred HHHHhc-cccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc-CCCC-CCc-----
Confidence 764411 001110 2334444443335667778888899999999999887 4332 2200 000
Q ss_pred HHhccCCCcceEEEEEeCCH---------------------HHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 217 SMANKEYGFGGLLCLDMETE---------------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~---------------------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
....++++.++.. .+...+.+.|.. .|+ .++.|.... .+.|......
T Consensus 278 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~v~~~~~~~-~~~p~~~~~~ 345 (394)
T 1o69_A 278 -------SNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKN---KQI-ETRPLWKAM-HTQEVFKGAK 345 (394)
T ss_dssp -------CCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH---TTC-CCBCCCCCG-GGCGGGTTCE
T ss_pred -------ceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHH---cCC-cccccCCcc-ccchhhhccC
Confidence 0112577887632 256677777764 343 333332110 0011100000
Q ss_pred --CCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhcC
Q 020548 276 --ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 320 (324)
Q Consensus 276 --~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~~ 320 (324)
.+.-... ...+.+|+..+ ...++++++.+.++|+++.+.+
T Consensus 346 ~~~~~~~~~----~~~~~~~~~~~-~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 346 AYLNGNSEL----FFQKGICLPSG-TAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp EEECSHHHH----HHHHEEEECCC-TTCCHHHHHHHHHHHHHHHC--
T ss_pred CCCChHHHH----HhcCeEEccCC-CCCCHHHHHHHHHHHHHHHhcc
Confidence 0001100 01145666668 8888899999999998876544
No 178
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.86 E-value=1.3e-20 Score=168.35 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=133.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEec--------------CCCHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVD--------------ISDHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~--------------~~d~~~l~~~l~~~~~~ 65 (324)
+|++.++.. +++||+|++++++|++.... ..... .| .++..++ ..|++++++++.+++++
T Consensus 62 ~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~ 137 (379)
T 3ke3_A 62 YGMEAVARQ-LTIDEDCLIIRNGWFSYRWT--QILEK-GKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSA 137 (379)
T ss_dssp HHHHHHHHH-HCTTCEEEEEECSHHHHHHH--HHHHH-HCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHh-CCCCCeEEEEeCCchhHHHH--HHHHH-hCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCc
Confidence 466666644 57999999999999875321 11111 33 2444443 25899999999445899
Q ss_pred EEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 66 VLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 66 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+|++++++|++|.+.| +++|.++|+++|+++|+|+++++ ...+....++|+++.|+||+++++. .+ |+++.+++
T Consensus 138 ~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~-g~-g~~~~~~~ 215 (379)
T 3ke3_A 138 IVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGIDVLISAPQKGWSSTP-CA-GLVMLSAA 215 (379)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCC-CE-EEEEECHH
T ss_pred EEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCCEEEecchhhcCCCC-ce-EEEEECHH
Confidence 9999999999999999 99999999999999999999851 1122333489999999999997643 33 99999999
Q ss_pred HHHHHHHhhhh-h----------------h-hccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 142 LVNSMMDLHQG-A----------------L-MLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 142 ~~~~l~~~~~~-~----------------~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+++.+...... . + .....++.....+.+...++ .++...+++.++++++.+.|++.+
T Consensus 216 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g 295 (379)
T 3ke3_A 216 AIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG 295 (379)
T ss_dssp HHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88877642110 0 0 00111333332222211111 245666777889999999999988
Q ss_pred CceeCC
Q 020548 199 LKVLYP 204 (324)
Q Consensus 199 ~~~~~p 204 (324)
+++..+
T Consensus 296 ~~~~~~ 301 (379)
T 3ke3_A 296 IESVAA 301 (379)
T ss_dssp CCBSBC
T ss_pred CEecCC
Confidence 765433
No 179
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.86 E-value=8.6e-21 Score=170.74 Aligned_cols=267 Identities=15% Similarity=0.152 Sum_probs=167.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce--eEEEecC------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+++...+.. . ...|. ++..++. .|++++++++.+.++++|+++ ++
T Consensus 96 ~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~ 172 (405)
T 2vi8_A 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-V-NFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AA 172 (405)
T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCT-T-SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccchhcccch-h-hhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CC
Confidence 477888888899999999999999877431100 0 01232 5555542 289999999933378888874 44
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCc-CC-C--CccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-L--SPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~-~--~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|. |...++++|.++|+++|+++|+|++|+. .. . .+... +.|++++|+||+++++. |||+++++++.+.+..
T Consensus 173 ~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~ 248 (405)
T 2vi8_A 173 AY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR---GGMILCQEQFAKQIDK 248 (405)
T ss_dssp SC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS---CEEEEECHHHHHHHHH
T ss_pred CC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCC---CeEEEEcHHHHHHHHh
Confidence 43 5667899999999999999999999852 11 1 11111 57899999999997433 4999999888888876
Q ss_pred hhhhhhhccCCCCCHHHHH-HHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 149 LHQGALMLLGPTMNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
..... ..++..+.+..+. .++.. ...++...+++.++++++.+.|++.+.++..|. +.
T Consensus 249 ~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~ 309 (405)
T 2vi8_A 249 AIFPG-IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG------------------TD 309 (405)
T ss_dssp HHTTT-TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CS
T ss_pred hhccc-ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC------------------CC
Confidence 64311 1122222233222 12222 134566777889999999999999876655432 24
Q ss_pred ceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC----C
Q 020548 226 GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----G 300 (324)
Q Consensus 226 g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~----~ 300 (324)
++++++.++. ......+.+.+.. .|+ .+..|.. |.... ....++.+|+|++ . .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~g~~------~~~~~-----------~~~~~~~iRis~~-~~~~~~ 367 (405)
T 2vi8_A 310 NHLLLVDLRPQQLTGKTAEKVLDE---VGI-TVNKNTI------PYDPE-----------SPFVTSGIRIGTA-AVTTRG 367 (405)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHH---HTE-ECEEECC------TTCSS-----------CTTTCSEEEEECH-HHHHTT
T ss_pred ceEEEEEccCCCCCHHHHHHHHHH---cCc-eeccCcC------ccccC-----------CCCCCCceEEeee-eeeecC
Confidence 6788999862 1134456665543 333 2222211 10000 0112467999999 5 2
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
.++++++.+.++|+++
T Consensus 368 ~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 368 FGLEEMDEIAAIIGLV 383 (405)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3355566666666554
No 180
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.86 E-value=1e-20 Score=172.89 Aligned_cols=265 Identities=11% Similarity=-0.031 Sum_probs=169.1
Q ss_pred hHHHHHHHccC--------CC-----CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCC
Q 020548 3 AISSVLMQLCS--------SG-----GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGR 63 (324)
Q Consensus 3 ai~~~~~~~~~--------~g-----d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~ 63 (324)
|+..++.++.. +| ++|++++ .|.++...++ ..|++++.++.+ |+++|++++ +++
T Consensus 115 a~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~-----~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~ 187 (452)
T 2dgk_A 115 ACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR-----YWDVELREIPMRPGQLFMDPKRMIEAC-DEN 187 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH-----HTTCEEEECCCBTTBCSCCHHHHHHHC-CTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH-----HcCceEEEEecCCCCCeECHHHHHHHH-hhC
Confidence 55566655543 55 5999999 9998888773 378888888763 899999999 788
Q ss_pred ceEEEEecCCCCcccccChHHHHHHHHhc------CCEEEEcCCCCcCCC----C--ccC---CCCcEEEeCCccccccC
Q 020548 64 TKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLVL----S--PAR---LGADVVVHSISKFISGG 128 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~~ivD~~~~~~~~----~--~~~---~~~d~~~~S~sK~~~~~ 128 (324)
+++|++++|+||||.+.|+++|.++|+++ |+++++|++|+++.. . +.. .++|+++.|+||++. .
T Consensus 188 t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~-~ 266 (452)
T 2dgk_A 188 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGL-A 266 (452)
T ss_dssp EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-C
T ss_pred CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccC-C
Confidence 99999999999999999999999999995 999999999965421 1 122 268999999999664 4
Q ss_pred CCeeEEEEEcC-hhHH-HHHHHhhhhhh----h--ccCCCCC--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 129 ADIIAGAVCGP-ANLV-NSMMDLHQGAL----M--LLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 129 g~r~~G~i~~~-~~~~-~~l~~~~~~~~----~--~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+.++ |+++.+ ++++ +.+.....+.. . ..+.... ....+..+. +...+.+..++..++++++.+.|++
T Consensus 267 ~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 345 (452)
T 2dgk_A 267 PLGC-GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 345 (452)
T ss_dssp CSSC-EEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCe-EEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6675 888765 4333 33321111000 0 0111122 112222222 2234567778889999999999999
Q ss_pred CC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH----HHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 197 LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 197 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~----~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
.+ +++..|..+. ...+++.|.+++. .+...+.+.|.. .|+ .... ...|..
T Consensus 346 ~~~~~~~~~~~~~---------------~~~~~v~f~~~~~~~~~~~~~~l~~~L~~---~Gi---~v~~----~~~~~~ 400 (452)
T 2dgk_A 346 LGPYEFICTGRPD---------------EGIPAVCFKLKDGEDPGYTLYDLSERLRL---RGW---QVPA----FTLGGE 400 (452)
T ss_dssp TSSEEEEEECCTT---------------TBSSEEEEEECTTCCCSCCHHHHHHHHHH---TTC---BCCE----EECSTT
T ss_pred CCCeEEecCCCCC---------------CCeEEEEEEecCcccccCCHHHHHHHHHh---cCC---eeee----eeCCcc
Confidence 86 4555442100 1456889988742 123567777764 232 1111 111111
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
. ...+.+|+|++ ..+++++++.+.++|+.+
T Consensus 401 ~--------------~~~~~lRis~~-~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 401 A--------------TDIVVMRIMCR-RGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp C--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred c--------------CCeEEEEEEec-CCCCHHHHHHHHHHHHHH
Confidence 0 01368999999 765566665555555443
No 181
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.86 E-value=1.9e-20 Score=171.22 Aligned_cols=191 Identities=14% Similarity=0.043 Sum_probs=129.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCc-hhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhcCCc-
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQGRT- 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y-~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~~~~- 64 (324)
+|+..++++++++|| +++.|+| +.+...+. ..|.++..++.+ |+++|++++ ++++
T Consensus 101 ~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~t~ 172 (456)
T 2ez2_A 101 GAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-----KNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLI-DEKGA 172 (456)
T ss_dssp HHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-----HTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHH-HHHCG
T ss_pred HHHHHHHHHhCCCCC--EeccccccchhHHHHH-----HcCCEEEEecccccccccccccccCCCCHHHHHHHH-Hhccc
Confidence 578888888899999 7889999 77666663 267777776432 789999998 4444
Q ss_pred ---eEEEEecCCC-CcccccC---hHHHHHHHHhcCCEEEEcCCCCc----------CCCCcc---------CCCCcEEE
Q 020548 65 ---KVLYFESISN-PTLAVAN---IPELSRLAHDKGVTVVVDNTFSP----------LVLSPA---------RLGADVVV 118 (324)
Q Consensus 65 ---~~v~~~~~~n-ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~----------~~~~~~---------~~~~d~~~ 118 (324)
++|++++|+| |||.+.+ +++|+++|+++|+++|+||+|+. +..... ....|+++
T Consensus 173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~ 252 (456)
T 2ez2_A 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCT 252 (456)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEE
T ss_pred cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEE
Confidence 8999999999 9999886 99999999999999999999943 222211 12368888
Q ss_pred eCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhh---hccCCCCCHHHH-HHHhcCcccH-HHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL---MLLGPTMNPKVA-FELSERIPHL-GLRMKEHCHRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~ 192 (324)
.|++|+++ ++ + +||+++ ++++++.+........ ...+.......+ +... ...+ +...++..++.+++.+
T Consensus 253 ~S~kk~~~-~~-~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~--~~~~~~~~~~~~~~~~~~l~~ 327 (456)
T 2ez2_A 253 MSGKKDCL-VN-I-GGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGL--REAMQYEYIEHRVKQVRYLGD 327 (456)
T ss_dssp EETTTTTC-CS-S-CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHH
T ss_pred EeCcccCC-CC-c-eeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 88899865 44 6 599988 6888888776543110 011111112222 1111 1222 3455566677788888
Q ss_pred HHHhCCCceeCCC
Q 020548 193 RMKKLGLKVLYPG 205 (324)
Q Consensus 193 ~L~~~~~~~~~p~ 205 (324)
.|++.+..+..|.
T Consensus 328 ~L~~~g~~~~~p~ 340 (456)
T 2ez2_A 328 KLKAAGVPIVEPV 340 (456)
T ss_dssp HHHHTTCCBCSSC
T ss_pred HHhcCCCccccCC
Confidence 8888665554444
No 182
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.85 E-value=8.3e-21 Score=172.33 Aligned_cols=262 Identities=10% Similarity=0.084 Sum_probs=160.3
Q ss_pred chHHHHHHHcc---C----CCCEEEEcCCCchhHHHHHhhhc-----------CcccceeEEEec---------CCCHHH
Q 020548 2 SAISSVLMQLC---S----SGGHVVAARTLYGGTHALLTHFF-----------PRACNITTTFVD---------ISDHEM 54 (324)
Q Consensus 2 ~ai~~~~~~~~---~----~gd~vl~~~p~y~~~~~~~~~~~-----------~~~~g~~~~~~~---------~~d~~~ 54 (324)
+|+..+++.+. + |||+|++++|.|+++........ +...+.....++ ..|+++
T Consensus 114 ea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 193 (429)
T 1s0a_A 114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence 35666666432 3 69999999999987544322110 000133333333 137899
Q ss_pred HHHhhhc--CCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeC
Q 020548 55 VNSAIVQ--GRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHS 120 (324)
Q Consensus 55 l~~~l~~--~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S 120 (324)
+++++.+ +++++|+++++ +||||.+.+ +++|+++|+++|+++|+||+|.++... . .....|++ |
T Consensus 194 l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t 271 (429)
T 1s0a_A 194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--C 271 (429)
T ss_dssp HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred HHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--E
Confidence 9998832 57888888877 899998766 999999999999999999999665321 1 12346665 5
Q ss_pred CccccccCC-CeeEEEEEcChhHHHHHHHhhh----hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 121 ISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 121 ~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
+||.+++ | .|+ |++++++++++.+..... ...++.++.+.+.++..++..+.. +...++..++++++.+.|+
T Consensus 272 ~sK~l~~-G~~~i-G~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~L~ 348 (429)
T 1s0a_A 272 LGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-GDWQQQVADIEVQLREQLA 348 (429)
T ss_dssp ECGGGGT-SSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHG
T ss_pred ecccccC-CCccc-eEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 8899986 7 897 999999998888765310 000111122222222222221111 2345666778889999988
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
+.+. .|.+. ...+.|.++++.++...+...+.+.+.. .|+.. .+
T Consensus 349 ~l~~---~~~~~-------------~~~~~g~~~~~~~~~~~~~~~l~~~l~~---~Gi~v-----------~~------ 392 (429)
T 1s0a_A 349 PARD---AEMVA-------------DVRVLGAIGVVETTHPVNMAALQKFFVE---QGVWI-----------RP------ 392 (429)
T ss_dssp GGGG---CTTEE-------------EEEEETTEEEEEESSCBCHHHHHHHHHH---TTEEC-----------CC------
T ss_pred HHhc---CCCEE-------------EEEEeeEEEEEEECCcccHHHHHHHHHH---CCCEE-----------ec------
Confidence 7521 11110 0002466899998742234556666653 23311 11
Q ss_pred CCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 276 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
.++++|+|++ ...++++++.+.++|+.+-
T Consensus 393 ------------~~~~iRis~~-~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 393 ------------FGKLIYLMPP-YIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp ------------BTTEEEECCC-TTCCHHHHHHHHHHHHHHT
T ss_pred ------------cCCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 0268999998 7777777777777776653
No 183
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.85 E-value=3e-21 Score=175.90 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=97.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--C---------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--S---------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~---------d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++.+++. + |++++ . .+++++|+++
T Consensus 83 ~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~-~~~~~~v~~~ 153 (446)
T 2x3l_A 83 SGILSVIQSFSQKKGDILMARNVHKSVLHALD-----ISQQEGHFIETHQSPLTNHYNKVNLSRL---N-NDGHKLVVLT 153 (446)
T ss_dssp HHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH-----HHTCCEEECEEEECTTTSSEEEEEC-----------CCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCccHHHHHHHH-----HcCCeEEEEeCeeccccCcCCCCCHHHH---c-CCCceEEEEE
Confidence 47888888889999999999999999988874 25666666554 2 45565 3 6789999999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCC-----CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~-----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+ .|++|.+.|+++|+++|+++|+++|+|++|+. +.+ +....++|++++|+||+++++ .. +|+++.++++++
T Consensus 154 ~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~-~g-~g~l~~~~~~i~ 230 (446)
T 2x3l_A 154 Y-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPAL-TM-GSVLYIHKNAPY 230 (446)
T ss_dssp S-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSC-TT-CEEEEEETTCTT
T ss_pred C-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccccccc-cc-cEEEEEcCCcCC
Confidence 9 56699999999999999999999999999854 311 223447899999999966543 23 499988776644
No 184
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.85 E-value=1.9e-20 Score=171.12 Aligned_cols=247 Identities=12% Similarity=0.074 Sum_probs=162.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhh-hc---CCceEEEEecCCCCcccccC
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAI-VQ---GRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l-~~---~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+.|++++++|+++...++ ..|++++.++. .|++++++++ .. .++.+|++++++||||.+.|
T Consensus 175 ~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~ 249 (456)
T 2z67_A 175 GSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD 249 (456)
T ss_dssp CCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC
T ss_pred CCCEEEEECCCcHHHHHHHH-----HcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC
Confidence 67889999999999887773 26888877764 2899999998 32 47788888999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCC--Ccc---CC--CCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RL--GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA 153 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~---~~--~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~ 153 (324)
+++|.++|+++|+++++|++|+.+.. .+. .. ++|++++|+||++++ +.++ |+++. ++++++.+.+...
T Consensus 250 l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~-p~g~-G~l~~~~~~~~~~l~~~~~-- 325 (456)
T 2z67_A 250 IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLT-PIGG-GLVYSTDAEFIKEISLSYP-- 325 (456)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCC-CSSC-EEEEESCHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCC-CCCe-EEEEEcCHHHHhhcCcCCC--
Confidence 99999999999999999999854432 111 11 789999999998755 3564 99987 5778777743322
Q ss_pred hhccCCC-CC-HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC----CCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 154 LMLLGPT-MN-PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 154 ~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+.. .. ....+..+. +...++...++..++++++.+.|++. +..+..|.
T Consensus 326 ----g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-------------------- 381 (456)
T 2z67_A 326 ----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-------------------- 381 (456)
T ss_dssp ----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--------------------
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--------------------
Confidence 211 11 222222222 22345566777889999999999987 54433221
Q ss_pred ceEEEEEe--CCHHHHHHHHHHhhccccccccccccC---CccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC
Q 020548 226 GGLLCLDM--ETEEKANRLMNYLQNYAQFGFMAVSLG---YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300 (324)
Q Consensus 226 g~~~~~~l--~~~~~~~~~~~~l~~~~~~g~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~ 300 (324)
++++|.+ ++. ...+.+.|.. .|+.++... +... ..++. ....+++|+|++ ..
T Consensus 382 -~~v~~~~~~~~~--~~~l~~~L~~---~gi~~~rv~~~~g~f~-G~~~~---------------~~~~~~vr~s~~-~~ 438 (456)
T 2z67_A 382 -SPIASCISVNSD--PVEIAAKLYN---LRVTGPRGIKKTDHFG-NCYLG---------------TYTHDYIVMNAA-IG 438 (456)
T ss_dssp -CSSEEEEECSSC--HHHHHHHHHH---TTEESCEEECTTCHHH-HTCSS---------------CCSCCEEEEECC-TT
T ss_pred -CeEEEEEecccH--HHHHHHHHHH---cCCCcceEEeecCccc-ccccc---------------ccCcchhhhhhh-cC
Confidence 3567777 542 2344454442 121010000 0000 00111 112478999999 88
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
+++++++.+.++|+++
T Consensus 439 ~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 439 VRTEDIVNSVSKLEKI 454 (456)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888888754
No 185
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=1.9e-20 Score=169.53 Aligned_cols=251 Identities=16% Similarity=0.131 Sum_probs=153.9
Q ss_pred chHHHHHHHccC-CCCEEEEcCCCchhHHHHHhhhcCc------c---cceeEEEecCC---------------------
Q 020548 2 SAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPR------A---CNITTTFVDIS--------------------- 50 (324)
Q Consensus 2 ~ai~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~~~~------~---~g~~~~~~~~~--------------------- 50 (324)
+|+..+++.+.. +||+|++++|.|++........... . ....+..++.+
T Consensus 115 ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~ 194 (419)
T 2eo5_A 115 EAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR 194 (419)
T ss_dssp HHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHH
Confidence 467777765443 3899999999998644432211100 0 11234444332
Q ss_pred CHHHHH-Hhhhc----CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCC
Q 020548 51 DHEMVN-SAIVQ----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA 114 (324)
Q Consensus 51 d~~~l~-~~l~~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~ 114 (324)
|+++++ +++.+ +++++|++++.+||||...+ +++|+++|+++|+++|+||+|.++.... .....
T Consensus 195 ~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~ 274 (419)
T 2eo5_A 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVP 274 (419)
T ss_dssp HHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCC
Confidence 367888 88842 46778887777788998665 8999999999999999999997664211 12245
Q ss_pred cEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q 020548 115 DVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 115 d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (324)
|++ |+||.+++ | .|+ ||++++++++ .+ .... ..++.++.+.+.++..++ +......++..++++++.+.
T Consensus 275 d~~--t~sK~~~~-G~~ri-G~~~~~~~~~-~~-~~~~-~~t~~~n~~~~~aa~aal---~~~~~~~~~~~~~~~~l~~~ 344 (419)
T 2eo5_A 275 DVI--TLAKALGG-GIMPI-GATIFRKDLD-FK-PGMH-SNTFGGNALACAIGSKVI---DIVKDLLPHVNEIGKIFAEE 344 (419)
T ss_dssp SEE--EECGGGGT-TTSCC-EEEEEEGGGC-CC--------CCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CEE--EecccccC-Cccce-EEEEEchHhh-cC-Cccc-CCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 655 69999986 8 997 9999988877 55 3111 111222222222222222 23333566678889999999
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceecccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 272 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~ 272 (324)
|++. .... + +.|.++++++. +..... +.+.+.. .|+.. .|.
T Consensus 345 L~~~-~~~~-~-------------------~~g~~~~i~~~~~~~~~~-~~~~l~~---~Gv~v-----------~~~-- 386 (419)
T 2eo5_A 345 LQGL-ADDV-R-------------------GIGLAWGLEYNEKKVRDR-IIGESFK---RGLLL-----------LPA-- 386 (419)
T ss_dssp HTTS-SSEE-E-------------------EETTEEEEECSCHHHHHH-HHHHHHH---TTEEC-----------EEE--
T ss_pred HHHh-hhhe-E-------------------eeeEEEEEEEecCccHHH-HHHHHHH---CCCEE-----------ecC--
Confidence 9775 2111 1 25778899984 223345 7776653 33311 111
Q ss_pred ccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 273 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ++++|+|++ ...+++.++.+.++|+++
T Consensus 387 -------------~--~~~lRis~~-~~~t~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 387 -------------G--RSAIRVIPP-LVISEEEAKQGLDILKKV 414 (419)
T ss_dssp -------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1 378999998 666666666666666544
No 186
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.85 E-value=3.5e-19 Score=162.00 Aligned_cols=286 Identities=14% Similarity=0.120 Sum_probs=175.8
Q ss_pred chHHHHHHHc---------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~---------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~ 66 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++
T Consensus 88 ~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~ 161 (437)
T 3bb8_A 88 SANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTI-----QNGLIPVFVDVDIPTYNVNASLIEAAV-SDKTKA 161 (437)
T ss_dssp HHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHH-----HTTCEEEECCEETTTTEECGGGHHHHC-CTTEEE
T ss_pred HHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEeccCccCCcCHHHHHHhc-CCCCeE
Confidence 4677888887 7899999999999999998884 268888887653 789999999 778999
Q ss_pred EEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCC--CcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 67 LYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 67 v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~--~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
|++++ ++|...++++|.++|+++|+++|+|++|+ +...+....+ .|+++.|++|..+.++++ +|+++.+++.+
T Consensus 162 v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~s~~~~k~l~~g~-gg~~~~~~~~~ 237 (437)
T 3bb8_A 162 IMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAKHITMGE-GGAVFTQSAEL 237 (437)
T ss_dssp EEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECSTTSSSCCSS-CEEEEESCHHH
T ss_pred EEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCeecccccCEEEEECcCCcCCCCCC-eEEEEeCCHHH
Confidence 99874 45666899999999999999999999994 3333333334 789999998877777888 59999886554
Q ss_pred HH-HHHhhhhh-h------------------------------h--ccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHH
Q 020548 144 NS-MMDLHQGA-L------------------------------M--LLGP--TMNPKVAFELSERIPHLGLRMKEHCHRA 187 (324)
Q Consensus 144 ~~-l~~~~~~~-~------------------------------~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (324)
.. +....... . + ..+. .+....++..+..+..+...+++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~~~~~~~~~~~~ 317 (437)
T 3bb8_A 238 KSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANF 317 (437)
T ss_dssp HHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33221100 0 0 0111 1234444444434455566677778888
Q ss_pred HHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCcccee
Q 020548 188 LIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 188 ~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
+++.+.|++. +..+ .|..+.... ......++.+..+...+...+.+.|.. .|+ .++.+......
T Consensus 318 ~~l~~~L~~~~g~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~---~GI-~v~~~~~~~~~ 382 (437)
T 3bb8_A 318 KYLKDALQSCADFIE-LPEATENSD----------PSWFGFPITLKEDSGVSRIDLVKFLDE---AKV-GTRLLFAGNLT 382 (437)
T ss_dssp HHHHHHGGGGTTTEE-CCCCCTTEE----------CCCSSEEEEECGGGSSCHHHHHHHHHH---TTB-CCBCCTTSSGG
T ss_pred HHHHHHhhccCCccc-cCCCCCCCc----------eeeEEEEEEECCcCcCcHHHHHHHHHH---CCC-ceeccCCcccc
Confidence 9999999887 3333 243110000 000111233433211234566666664 343 33333211010
Q ss_pred ccccccc-----cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 267 SCSGSST-----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 267 ~~~~~~~-----~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
..|.... ....+...+ ...+.+|++++ ...++++++.+.++|+++-
T Consensus 383 ~~p~~~~~~~~~~~~~~~~~~----~~~~~lrl~~~-~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 383 RQPYFHDVKYRVVGELTNTDR----IMNQTFWIGIY-PGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp GSGGGSSCCCEECSCCHHHHH----HHHHEEEECCS-TTCCHHHHHHHHHHHHHHT
T ss_pred cCchhhccCccccCCCcHHHH----HhcCEEEecCC-CCCCHHHHHHHHHHHHHHH
Confidence 1111100 000101111 01356999999 9999999999999998764
No 187
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.85 E-value=1e-20 Score=172.19 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=136.6
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcc----------cceeEEEecCC----------CHHHHHHhh
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRA----------CNITTTFVDIS----------DHEMVNSAI 59 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~----------~g~~~~~~~~~----------d~~~l~~~l 59 (324)
+|+..+++.+ ..++++|++.++.|++............ ....+..++.+ |+++|++++
T Consensus 115 ea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 194 (439)
T 3dxv_A 115 DANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKL 194 (439)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHH
Confidence 4666677664 3356889999999876554332111000 00011233333 589999988
Q ss_pred h---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCcccc
Q 020548 60 V---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFI 125 (324)
Q Consensus 60 ~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~ 125 (324)
+ .+++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+++... . .....|++ |+||.+
T Consensus 195 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~ 272 (439)
T 3dxv_A 195 AAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGL 272 (439)
T ss_dssp HTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGG
T ss_pred HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchh
Confidence 4 457899999999999999987 999999999999999999999765321 1 12245666 799999
Q ss_pred ccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhC----CC
Q 020548 126 SGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKL----GL 199 (324)
Q Consensus 126 ~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~ 199 (324)
++ |+|+ ||+++++++++.+..... ..++ ..+...+.+...++.+ +...++..++++++.+.|++. +.
T Consensus 273 ~~-G~ri-G~~~~~~~~~~~~~~~~~-~~t~----~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 345 (439)
T 3dxv_A 273 GG-GLPL-SAVIAPAEILDCASAFAM-QTLH----GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPL 345 (439)
T ss_dssp GT-TSCC-EEEEEEHHHHTSCSSSSC-CTTT----TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cC-Ccce-EEEEECHHHHhhhcCCCc-CCCc----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 86 8997 999999988877755432 1112 2222222222222211 234455566666666666653 32
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe--------CCHHHHHHHHHHhhc
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM--------ETEEKANRLMNYLQN 248 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l--------~~~~~~~~~~~~l~~ 248 (324)
....+ +.|.++++.+ +.......+.+.+..
T Consensus 346 ~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (439)
T 3dxv_A 346 IGDIR-------------------GRGLACGMELVCDRQSREPARAETAKLIYRAYQ 383 (439)
T ss_dssp EEEEE-------------------EETTEEEEEEEEETTTTEECHHHHHHHHHHHHH
T ss_pred eEEEE-------------------EEEEEEEEEEecCccccCCCHHHHHHHHHHHHH
Confidence 11111 2577888887 445556777777664
No 188
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.85 E-value=1.3e-20 Score=171.18 Aligned_cols=263 Identities=12% Similarity=0.104 Sum_probs=157.0
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhh---------cCcccceeEEEecC------C---------CHHHH
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF---------FPRACNITTTFVDI------S---------DHEMV 55 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~~~~~~~~------~---------d~~~l 55 (324)
+|+..+++.+. ..+|+|++.+|.|++........ .+...|+....++. . |++++
T Consensus 113 ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l 192 (433)
T 1zod_A 113 ESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYA 192 (433)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHH
Confidence 46677766532 23589999999998754432211 11112444443321 1 38999
Q ss_pred HHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-c------cCCCCcEEEeCC
Q 020548 56 NSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-P------ARLGADVVVHSI 121 (324)
Q Consensus 56 ~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-~------~~~~~d~~~~S~ 121 (324)
++++++ +++++|++++++||||...+ +++|+++|++||+++|+||+|+++... . .....|++ |+
T Consensus 193 e~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~ 270 (433)
T 1zod_A 193 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TL 270 (433)
T ss_dssp HHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EE
T ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--Ee
Confidence 998843 57888888877899997655 999999999999999999999766421 1 12235554 78
Q ss_pred ccccccCCCeeEEEEEcChhHHHHHHHhhhhh-hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC---
Q 020548 122 SKFISGGADIIAGAVCGPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL--- 197 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 197 (324)
||.+++ |.|+ ||+++++++++.+....... .++.++.+.+.++..++..+.. +...++..++++++.+.|++.
T Consensus 271 sK~~~~-G~~i-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~ 347 (433)
T 1zod_A 271 SKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGLVARANVMGDRLRRGLLDLMER 347 (433)
T ss_dssp CHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccC-CCCe-eEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987 8997 99999999988887632100 1122222222222222221111 234455677777787777664
Q ss_pred -CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--------HHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 198 -GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 198 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
+.....+ +.|.++++++.. ......+.+.+.. .|++ +.
T Consensus 348 ~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~---~Gv~-----------v~ 394 (433)
T 1zod_A 348 FDCIGDVR-------------------GRGLLLGVEIVKDRRTKEPADGLGAKITRECMN---LGLS-----------MN 394 (433)
T ss_dssp CTTEEEEE-------------------EETTEEEEEEEEETTTTEECTTHHHHHHHHHHH---TTEE-----------CC
T ss_pred CCCeEEEE-------------------EEEEEEEEEEecCccccCCChHHHHHHHHHHHH---CCCe-----------Ee
Confidence 2210111 257788988752 1235667776653 3331 12
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
|+..+ + .++++|+|++ ...+++.++.+.++|+.+
T Consensus 395 ~~~~~------------~-~~~~lRi~~~-~~~t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 395 IVQLP------------G-MGGVFRIAPP-LTVSEDEIDLGLSLLGQA 428 (433)
T ss_dssp EECCT------------T-SCCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ccCCC------------C-CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 21110 1 1378999988 666666666555555443
No 189
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.84 E-value=3.5e-20 Score=166.59 Aligned_cols=262 Identities=9% Similarity=0.007 Sum_probs=158.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHH-HHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHA-LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~-~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++++++++| .+++..+.|..... ... ..+ .|.++..++.++-......+ ++++++|++++++||||.+.
T Consensus 108 ~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~-~~~--~g~~~~~v~~~~g~~~~~~i-~~~~~~v~~~~~~nptG~~~ 182 (398)
T 2fyf_A 108 AFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVS-KNP--FVGEPIIITSDPGSAPEPQT-DPSVDVIAWAHNETSTGVAV 182 (398)
T ss_dssp HHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHH-HCT--TSCCCEEEECCTTCCCCCCC-CTTCSEEEEESEETTTTEEC
T ss_pred HHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHH-HhC--CCCceEEEecCCCCCCCccc-cCCCCEEEEeCcCCCcceec
Confidence 57888999988887 23334444432111 121 111 25666666543100000124 67899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh---------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--------- 150 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~--------- 150 (324)
|+++|.++ +|+++|+|++|+.+.. +.+. +.|++++|+||+++++| ++ ||++.++++++.+....
T Consensus 183 ~~~~i~~~---~~~~vivD~a~~~~~~-~~~~~~~di~~~s~sK~~~~~g-g~-g~l~~~~~~~~~l~~~~~~~~~~~~~ 256 (398)
T 2fyf_A 183 AVRRPEGS---DDALVVIDATSGAGGL-PVDIAETDAYYFAPQKNFASDG-GL-WLAIMSPAALSRIEAIAATGRWVPDF 256 (398)
T ss_dssp CCCCCTTC---C-CEEEEECTTTTTTS-CCCGGGCSEEEECTTSTTCSCS-SE-EEEEECHHHHHHHHHHHHTTCCCCGG
T ss_pred chHHhhhh---cCCeEEEEeccccCCc-ccCcccCcEEEEecCcccCCCC-ce-EEEEECHHHHHHhhcccccCCCCCcE
Confidence 99988877 8999999999854332 2222 47999999999998874 46 99999999888775421
Q ss_pred -hhh---h----hccCCCCCHHH---HHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHH
Q 020548 151 -QGA---L----MLLGPTMNPKV---AFELSERIP---HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 151 -~~~---~----~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~ 215 (324)
.+. . .....++.... +..++..+. .++...+++.++++++.+.|++. +.++..+. +.
T Consensus 257 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~---- 328 (398)
T 2fyf_A 257 LSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTD----PG---- 328 (398)
T ss_dssp GCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCS----GG----
T ss_pred EehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCC----hh----
Confidence 000 0 01112233221 122222211 15566777889999999999998 44544211 00
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
...+.++++.++...+...+.+.|.. .|+ .+..| .. ...++++|+|
T Consensus 329 -------~~~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~v~~g----------~~-------------~~~~~~iRis 374 (398)
T 2fyf_A 329 -------LRSQVVGTIDFVDDVDAGTVAKILRA---NGI-VDTEP----------YR-------------KLGRNQLRVA 374 (398)
T ss_dssp -------GBCSSEEEEEECTTSCHHHHHHHHHH---TTC-BCCSC----------CT-------------TTCSSEEEEE
T ss_pred -------hcCCcEEEEECCCCCCHHHHHHHHHH---CCc-EEecC----------cc-------------cCCCCEEEEE
Confidence 01234899999633345667777664 233 21111 00 1124789999
Q ss_pred eccCCCHHHHHHHHHHHHHhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++ ..+++++++.+.++|+++-
T Consensus 375 ~~-~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 375 MF-PAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp CC-TTSCHHHHHHHHHHHHHHH
T ss_pred ec-CCCCHHHHHHHHHHHHHHH
Confidence 99 8777888888887776653
No 190
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.84 E-value=6.3e-20 Score=166.57 Aligned_cols=144 Identities=11% Similarity=0.094 Sum_probs=95.5
Q ss_pred chHHHHHHHcc--------CCCCEEEEcCCCchhHHHHHhhhcCcc-----c---ce--eEEEecCC--------CHHHH
Q 020548 2 SAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPRA-----C---NI--TTTFVDIS--------DHEMV 55 (324)
Q Consensus 2 ~ai~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~~~~~-----~---g~--~~~~~~~~--------d~~~l 55 (324)
+|+..+++.++ .++|+|++.+|.|+++........... + .. .+..++.+ |+++|
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGL 179 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHH
Confidence 45777777665 347899999999998764332111000 0 00 22333333 44888
Q ss_pred HHhhhc---CCceEEEEecCCC-CcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------cc-CCCCcEEEe
Q 020548 56 NSAIVQ---GRTKVLYFESISN-PTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PA-RLGADVVVH 119 (324)
Q Consensus 56 ~~~l~~---~~~~~v~~~~~~n-ptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~-~~~~d~~~~ 119 (324)
++++++ +++++|++++++| ++|...+ +++|+++|+++|+++|+||+|.++... .. ....|++
T Consensus 180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~-- 257 (430)
T 3i4j_A 180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIA-- 257 (430)
T ss_dssp HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEE--
T ss_pred HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEE--
Confidence 888842 5678888888888 9998766 899999999999999999999766321 11 2235555
Q ss_pred CCccccccCC-CeeEEEEEcChhHHHHHHHh
Q 020548 120 SISKFISGGA-DIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 120 S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~ 149 (324)
++||.+++ | +|+ ||+++++++++.+...
T Consensus 258 t~sK~l~~-G~~r~-G~~~~~~~i~~~~~~~ 286 (430)
T 3i4j_A 258 VLGKGLAA-GYAPL-AGLLAAPQVYETVMGG 286 (430)
T ss_dssp EECGGGTT-TSSCC-EEEEECHHHHHHHHHT
T ss_pred EEcccccC-Ccccc-EEEEECHHHHHHHhcc
Confidence 48899986 8 997 9999999999998864
No 191
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.84 E-value=9.1e-20 Score=168.75 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=165.3
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhcCC------ceEEEEecCCCCcccc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAV 79 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~~~------~~~v~~~~~~nptG~~ 79 (324)
+++.|+++.+.|.++...++ ..|. +++.++.+ |+++|++++ +++ +++|++++++|++|.+
T Consensus 191 ~~~~v~~s~~~H~s~~~~~~-----~~g~g~~~~~~v~~d~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~~~~G~v 264 (511)
T 3vp6_A 191 PKLVLFTSEQSHYSIKKAGA-----ALGFGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAF 264 (511)
T ss_dssp CCEEEEEETTSCTHHHHHHH-----HTTSCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred CCeEEEECCCchHHHHHHHH-----HcCCCCCcEEEeecCCCCccCHHHHHHHH-HHHHhcCCCcEEEEEecCCCCCccc
Confidence 57799999999999998884 2454 67777654 899999999 433 8899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCc-CCCCc-c------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSP-LVLSP-A------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~-~------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
.|+++|+++|+++|+++++|++|++ ....+ . ..++|+++.++||++++|... +++++.++++.........
T Consensus 265 d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~ 343 (511)
T 3vp6_A 265 DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC-SAILVKEKGILQGCNQMHA 343 (511)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCC-EEEEESSTTHHHHHHCCCC
T ss_pred ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCe-EEEEEeCHHHHHHHhccCC
Confidence 9999999999999999999999944 32222 0 115799999999999876444 3455666666665432111
Q ss_pred hhhh-----------------ccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 152 GALM-----------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 152 ~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
.+.. ..+........+..+. +...+++++++..++++++.+.|++. ++++..+.-
T Consensus 344 ~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~----- 418 (511)
T 3vp6_A 344 SYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE----- 418 (511)
T ss_dssp TTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSC-----
T ss_pred ccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC-----
Confidence 1100 0111123343444332 33456788888999999999999987 446554210
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCHH----------------HHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETEE----------------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~~----------------~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
...++++|.+.+.. ....+.+.|.. .|.+.++ ..+.
T Consensus 419 ------------p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~G~~~~~--------~~~~----- 470 (511)
T 3vp6_A 419 ------------PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME---SGTTMVG--------YQPQ----- 470 (511)
T ss_dssp ------------CSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH---HTSCEEE--------EEEE-----
T ss_pred ------------CCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh---cCCEEEE--------EEEe-----
Confidence 12446777653211 12345555553 2221111 0000
Q ss_pred CCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhhhh
Q 020548 276 ELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+...+++|+++ + ..++.++++.+.++++++.+
T Consensus 471 ----------~~~~~~lRi~~~~-~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 471 ----------GDKANFFRMVISN-PAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp ----------TTEEEEEEECCCC-TTCCHHHHHHHHHHHHHHHC
T ss_pred ----------CCceEEEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 11125799999 5 66777888888888877754
No 192
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=5.8e-20 Score=167.60 Aligned_cols=191 Identities=20% Similarity=0.241 Sum_probs=132.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEecC------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVDI------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++++|||+|++++|+|+++...... . ... +..+.+++. .|++++++++.+.++++|++++++
T Consensus 118 ~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~ 195 (447)
T 3h7f_A 118 QANAAVLHALMSPGERLLGLDLANGGHLTHGMR-L-NFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSA 195 (447)
T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCT-T-SHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSS
T ss_pred HHHHHHHHHhcCCCCEEEecCcccccccchhhh-h-hhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCC
Confidence 467888888999999999999999773211100 0 001 223334432 389999999855678999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||++. ++++|+++|+++|+++|+|++| .++. ..+.. ++|+++.|+||+++ |++ +|++++++++.+.+.
T Consensus 196 ~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~-~~di~~~s~sK~l~--G~~-gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 196 YPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVP-HADVVSTTVHKTLG--GGR-SGLIVGKQQYAKAIN 269 (447)
T ss_dssp CCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSGGGC--CCS-CEEEEECGGGHHHHH
T ss_pred CCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCC-CCcEEEecCCcCCC--CCC-eEEEEECHHHHHHHh
Confidence 98876 9999999999999999999997 3321 22232 57999999999985 456 599999999988887
Q ss_pred HhhhhhhhccCCCCCH--HHHHHHhc-Ccc-cHHHHHHHHHHHHHHHHHHHHhC-----CCcee
Q 020548 148 DLHQGALMLLGPTMNP--KVAFELSE-RIP-HLGLRMKEHCHRALIFARRMKKL-----GLKVL 202 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~ 202 (324)
....+. ..++.... .++..++. ... .++.+.++..++++++.+.|++. ++.+.
T Consensus 270 ~~~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~ 331 (447)
T 3h7f_A 270 SAVFPG--QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVV 331 (447)
T ss_dssp HHHTTT--TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEG
T ss_pred hhcCCc--ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEe
Confidence 664421 22222222 12222222 222 45677788899999999999887 66543
No 193
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.83 E-value=3.1e-19 Score=163.14 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHh----hhcCcccce--eEEEec------CCCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLT----HFFPRACNI--TTTFVD------ISDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~----~~~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++.++++|||+|++.++.|.++..... ... ...|. .+.+++ ..|++++++++...++++|++
T Consensus 131 ~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i-~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~ 209 (490)
T 2a7v_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRI-SATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHHHCCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCCEecccCccccccccchhhhcchhH-HHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEE
Confidence 47888899999999999999999976532110 000 11232 222332 128999999984457899998
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh--
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-- 141 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-- 141 (324)
+.++|| ...|+++|+++|+++|+++++|+++ .++ ...+.. ++|++++|+||++++| + ||+++++++
T Consensus 210 ~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp--~-GG~i~~~~~~~ 283 (490)
T 2a7v_A 210 GTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA--R-SGLIFYRKGVK 283 (490)
T ss_dssp CCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC--S-CEEEEEECSEE
T ss_pred cCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc--c-chheeeccchh
Confidence 888886 4679999999999999999999997 332 123443 6899999999998654 4 699987653
Q ss_pred -------------HHHHHHHhhhhhhhccCCCCCHHHHHH-HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 142 -------------LVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 142 -------------~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+.+.++.... .+...++.+...++.. ++... ..+.++.++..++++++.+.|++.|+++..+.
T Consensus 284 ~~~~~~~~~~~~~l~~~i~~~~~-~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~ 362 (490)
T 2a7v_A 284 AVDPKTGREIPYTFEDRINFAVF-PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGG 362 (490)
T ss_dssp EEETTTEEEEECCCHHHHHHHHT-TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred cccccccchhhHHHHHHHHHHhc-ccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCC
Confidence 5566665433 1112222222222211 11111 23456777889999999999999988664322
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
....++++.+.+. .....+.+.|.
T Consensus 363 ------------------t~t~lv~vdl~~~g~~~~~~~~~L~ 387 (490)
T 2a7v_A 363 ------------------TDNHLVLVDLRPKGLDGARAERVLE 387 (490)
T ss_dssp ------------------CSSSEEEEECTTTTCCHHHHHHHHH
T ss_pred ------------------CCCeEEEEEeCCCCCCHHHHHHHHH
Confidence 1245788888631 12344445554
No 194
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.83 E-value=2.2e-18 Score=154.39 Aligned_cols=273 Identities=15% Similarity=0.113 Sum_probs=171.5
Q ss_pred chHHHHHHHc-------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQL-------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~-------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~ 68 (324)
+|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+ |++++++++ ++++++|+
T Consensus 60 ~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~ 133 (390)
T 3b8x_A 60 TANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-----QYGLRVKFVDIDINTLNIDIESLKEAV-TDSTKAIL 133 (390)
T ss_dssp HHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTTCSBCHHHHHHHC-CTTEEEEE
T ss_pred HHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCccccCcCHHHHHHHh-CcCCeEEE
Confidence 4678888887 7899999999999999998874 268888887754 899999999 77899999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCC--cEEEeCC--ccccccCCCeeEEEEEcCh-hH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHSI--SKFISGGADIIAGAVCGPA-NL 142 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~--d~~~~S~--sK~~~~~g~r~~G~i~~~~-~~ 142 (324)
++ |++|...++++|.++|+++|+++|+|++|+ +...+....+. |+.+.|+ +|.+++ ++ ||+++.++ ++
T Consensus 134 ~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~--g~-gG~~~~~~~~l 207 (390)
T 3b8x_A 134 TV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIAT--ME-GGCIVTDDEEI 207 (390)
T ss_dssp EE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS--SS-CEEEEESCHHH
T ss_pred EE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCcc--CC-ceEEEeCCHHH
Confidence 87 467888999999999999999999999995 43333334444 5555443 344432 23 58888765 67
Q ss_pred HHHHHHhhhhhh-h------------------------ccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 143 VNSMMDLHQGAL-M------------------------LLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 143 ~~~l~~~~~~~~-~------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
.+.+.....+.. . ..|. .+....++..+..++.++...++..++++++.+.|+
T Consensus 208 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~ 287 (390)
T 3b8x_A 208 YHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFK 287 (390)
T ss_dssp HHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777766443110 0 0111 144555555444456667777778899999999998
Q ss_pred hCC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhcccccccccccc---CCccceeccc
Q 020548 196 KLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSL---GYYETLMSCS 269 (324)
Q Consensus 196 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~---g~~~~~~~~~ 269 (324)
+.+ .++..+. .. .....+++.++. ..+...+.+.|.. .|+ .++. |..+.. +|
T Consensus 288 ~~~~~~~~~~~--~~--------------~~~~~~~i~~~~~~~~~~~~l~~~L~~---~gI-~v~~~~~~~~~~~--~~ 345 (390)
T 3b8x_A 288 DHPYLDVQQET--GE--------------SSWFGFSFIIKKDSGVIRKQLVENLNS---AGI-ECRPIVTGNFLKN--TD 345 (390)
T ss_dssp TCSSEEECCCC--SB--------------CCCCEEEEEECTTSCCCHHHHHHHHHH---TTB-CCBCSTTSSGGGC--HH
T ss_pred CCCCcccCCCC--CC--------------cccEEEEEEecCcCcccHHHHHHHHHH---CCC-CeeeecCCchhhc--ch
Confidence 874 3433221 00 112246666652 1234556666653 343 2222 111111 01
Q ss_pred ccc--cc---CCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 270 GSS--TS---SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 270 ~~~--~~---~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
... .+ ...+.... ...+.+|++++ ...++++++.+.++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~----~~~~~l~l~~~-~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 346 VLKYFDYTVHNNVDNAEY----LDKNGLFVGNH-QIELFDEIDYLREVL 389 (390)
T ss_dssp HHTTCEEEESSCCHHHHH----HHHHEEEEECC-SSCCHHHHHHHHHHT
T ss_pred hhhcCCCCCcCCChHHHH----HhcCEEEeeCC-CCCCHHHHHHHHHhh
Confidence 000 00 00100111 11367999999 998998888887765
No 195
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.83 E-value=5.3e-19 Score=161.37 Aligned_cols=261 Identities=10% Similarity=0.105 Sum_probs=159.2
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHH-HHhh---------hcCcccceeEEEecC--------CC----
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHA-LLTH---------FFPRACNITTTFVDI--------SD---- 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~-~~~~---------~~~~~~g~~~~~~~~--------~d---- 51 (324)
+|+..+++++.. +||+|++.+|.|++... .+.. +.+...++....++. .|
T Consensus 121 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~ 200 (449)
T 3a8u_X 121 ECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG 200 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHH
Confidence 467777776543 67999999999987543 2211 011112344333322 14
Q ss_pred ----HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC
Q 020548 52 ----HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG 113 (324)
Q Consensus 52 ----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~ 113 (324)
+++|++++++ +++++|++++.+|+||.+.+ +++|+++|++||+++|+||+|.++.... ....
T Consensus 201 ~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~ 280 (449)
T 3a8u_X 201 GIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVT 280 (449)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCC
Confidence 8999999842 57788888887888999887 9999999999999999999996664211 1224
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh----h-hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----G-ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCH 185 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 185 (324)
.|++ |+||.+++ | .|+ |+++.++++++.+..... . .......+..+..++.+...++.+. ...++..+
T Consensus 281 ~di~--s~sK~l~~-G~~~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~ 356 (449)
T 3a8u_X 281 PDLM--CIAKQVTN-GAIPM-GAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAE 356 (449)
T ss_dssp CSEE--EECGGGGT-TSSCC-EEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCEE--EEcccccC-CCCce-EEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5766 78899986 6 897 999888888888765310 0 0001112223333322222222222 35566788
Q ss_pred HHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH-----HHHHHHHHhhcccccccccccc
Q 020548 186 RALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-----KANRLMNYLQNYAQFGFMAVSL 259 (324)
Q Consensus 186 ~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-----~~~~~~~~l~~~~~~g~~~~~~ 259 (324)
+++++.+.|++.+ ..... ...+.|.+++++++... ....+.+.+.. .|++
T Consensus 357 ~~~~l~~~L~~l~~~~~~~-----------------~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~---~Gv~---- 412 (449)
T 3a8u_X 357 VAPHFEKALHGIKGAKNVI-----------------DIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWK---AGFY---- 412 (449)
T ss_dssp HHHHHHHHHHTTTTSTTEE-----------------EEEEETTEEEEEECCBTTBSSHHHHHHHHHHHH---HTEE----
T ss_pred HHHHHHHHHHHHhcCCCeE-----------------EEeeeEEEEEEEEecCcccccccHHHHHHHHHH---CCcE----
Confidence 8888999988743 11110 00125789999997321 22346666553 2331
Q ss_pred CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 260 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.| + .+.+|+|++ ...++++++.+.++|+++
T Consensus 413 -------v~~----------------~--g~~iRis~~-~~~t~~~i~~~l~~l~~~ 443 (449)
T 3a8u_X 413 -------VRF----------------G--GDTLQFGPT-FNSKPQDLDRLFDAVGEV 443 (449)
T ss_dssp -------CEE----------------E--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------Eec----------------C--CCEEEEECC-CcCCHHHHHHHHHHHHHH
Confidence 111 0 168999987 666666666666666544
No 196
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.82 E-value=5.9e-19 Score=161.84 Aligned_cols=270 Identities=14% Similarity=0.103 Sum_probs=163.0
Q ss_pred chHHHHHHHccC----CCCE---EEEcCCCchhHHHHHhhhcCcccceeEEEec---------------CCCHHHHHHhh
Q 020548 2 SAISSVLMQLCS----SGGH---VVAARTLYGGTHALLTHFFPRACNITTTFVD---------------ISDHEMVNSAI 59 (324)
Q Consensus 2 ~ai~~~~~~~~~----~gd~---vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~---------------~~d~~~l~~~l 59 (324)
+|+..++.++++ +||+ |+++.+.|..+...+. ..|.++..++ ..|+++|++++
T Consensus 102 ~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i 176 (467)
T 1ax4_A 102 GAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENI 176 (467)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-----ccCCceecccccccccccccCCcccccCHHHHHHHH
Confidence 477888888887 9998 9998776677666663 1455544331 12899999999
Q ss_pred hc---CCceEEEEecCCCCc-ccccC---hHHHHHHHHhcCCEEEEcCCCCc---C-------CC---CccC------CC
Q 020548 60 VQ---GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP---L-------VL---SPAR------LG 113 (324)
Q Consensus 60 ~~---~~~~~v~~~~~~npt-G~~~~---~~~i~~l~~~~~~~~ivD~~~~~---~-------~~---~~~~------~~ 113 (324)
.+ +++++|++++|+||+ |.+.+ +++|+++|++||+++|+|+++.. + .. +..+ ..
T Consensus 177 ~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (467)
T 1ax4_A 177 AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 256 (467)
T ss_dssp HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGG
T ss_pred HhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccc
Confidence 43 379999999999999 78754 67999999999999999998621 1 11 1111 23
Q ss_pred CcEEEeCCccccccCCCeeEEEEEcC-h-hHHHHHHHhhhhh--hhccCCCCCHHHHH--H-HhcCcccHHHHHHHHHHH
Q 020548 114 ADVVVHSISKFISGGADIIAGAVCGP-A-NLVNSMMDLHQGA--LMLLGPTMNPKVAF--E-LSERIPHLGLRMKEHCHR 186 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g~r~~G~i~~~-~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 186 (324)
.|+++.|+||+++++ +||+++.+ + ++++.+....... ....+ ........ . .+..... ++.+++..++
T Consensus 257 ~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~ 331 (467)
T 1ax4_A 257 ADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYG-GLAGRDMAAMVQGLEEGTE-EEYLHYRIGQ 331 (467)
T ss_dssp CSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTT-TCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred cceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccC-CccchHHHHHHHHHHHhhh-hhHHHHHHHH
Confidence 688899999999776 25888777 7 8888776554311 00111 12221111 1 1211111 2344455577
Q ss_pred HHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEE-------eCC-HHHHHHHHHHh-hcccccccccc
Q 020548 187 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-------MET-EEKANRLMNYL-QNYAQFGFMAV 257 (324)
Q Consensus 187 ~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------l~~-~~~~~~~~~~l-~~~~~~g~~~~ 257 (324)
++++.+.|++.+..+..|. +|.++++. ++. ..+...+.+.+ .. .|+ .+
T Consensus 332 ~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~gv-~v 388 (467)
T 1ax4_A 332 VKYLGDRLREAGIPIQYPT-------------------GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLE---SGV-RA 388 (467)
T ss_dssp HHHHHHHHHHTTCCBCSSC-------------------CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHH---HCE-EC
T ss_pred HHHHHHHHHhCCCCcccCC-------------------CceEEEEehhhhccccccCCCCHHHHHHHHHHh---cCc-ee
Confidence 8889999988655544343 46678888 432 22456677776 53 343 22
Q ss_pred cc-CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC-CHHHHHHHHHHHHHhh
Q 020548 258 SL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSRM 316 (324)
Q Consensus 258 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~-~~~~~~~~l~~~l~~~ 316 (324)
+. |.+.... .+.... ......+++|||++ .. .++++++.+.++|+++
T Consensus 389 ~~~g~~~~~~-~~~~g~----------~~~~~~~~iRls~~-~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 389 VEIGSFLLGR-DPATGE----------QKHADMEFMRLTIA-RRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp EEESHHHHCB-CTTTCS----------BCCCSCCEEEEECC-TTSSCHHHHHHHHHHHHTT
T ss_pred eecCcccccc-cccccc----------ccccccceEEEecc-cccCCHHHHHHHHHHHHHH
Confidence 22 2210000 000000 00012379999998 54 5566666666666554
No 197
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.82 E-value=7e-19 Score=160.07 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=158.4
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+++||+|+++.++|+++...++..... .|++++.++.. |+++ + ++++++|++++| ||||.+.|+++|.+
T Consensus 147 ~~~gd~Viv~~~~h~s~~~~~~~~a~~-~G~~v~~v~~~~~~~d~~~----i-~~~t~~v~i~~p-n~tG~~~~l~~i~~ 219 (438)
T 1wyu_A 147 ETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLPLEGGRTPLPE----V-GEEVGAVVVQNP-NFLGALEDLGPFAE 219 (438)
T ss_dssp HHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEECCBTTBCCCCC----C-CTTEEEEEEESS-CTTSBCCCHHHHHH
T ss_pred cCCCCEEEEcCccCHhHHHHHHHHHHH-CCCEEEEEcCcCCccCHHH----h-CCCeEEEEEECC-CCCeEEecHHHHHH
Confidence 578999999999999999887544433 68898888752 3333 5 678999999999 99999999999999
Q ss_pred HHHhcCCEEEEcCC-C-CcCCCCccCCCCcEEEeCCcc-----ccccCCCeeEEEEEcChhHHHHHHHhhhh--------
Q 020548 88 LAHDKGVTVVVDNT-F-SPLVLSPARLGADVVVHSISK-----FISGGADIIAGAVCGPANLVNSMMDLHQG-------- 152 (324)
Q Consensus 88 l~~~~~~~~ivD~~-~-~~~~~~~~~~~~d~~~~S~sK-----~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-------- 152 (324)
+|+++|+++++|.. + .+....+..+++|++++|.+| ++++| ++ |+++.++++.+.+.....+
T Consensus 220 la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp--~~-G~l~~~~~~~~~l~~~~~g~~~~~~~~ 296 (438)
T 1wyu_A 220 AAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGP--HF-GFLATKKAFVRQLPGRLVSETVDVEGR 296 (438)
T ss_dssp HHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCS--CC-EEEEECGGGGGGCCSCCEEEEEBTTSC
T ss_pred HHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCC--Ce-eEEEEcHHHHHhCCCceeccccccCCC
Confidence 99999999996633 2 222223345589999999444 34443 54 9999988877655221000
Q ss_pred -----------------hhhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 153 -----------------ALMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 153 -----------------~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
.++...++..+..+..+ +... ..+.+..++..++++++.+.|++. ++++..|.
T Consensus 297 ~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 372 (438)
T 1wyu_A 297 RGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK---- 372 (438)
T ss_dssp EEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----
T ss_pred cceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC----
Confidence 00011111133322111 2111 235556677789999999999998 66655332
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccccc--ccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV--SLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
..-.++.+.++ .....+.+.|.. .|+ .+ ..+.. .
T Consensus 373 --------------~~~~~~~~~~~--~~~~~~~~~L~~---~gi-~v~~~~~~~------------------------~ 408 (438)
T 1wyu_A 373 --------------PFFNEFALALP--KDPEAVRRALAE---RGF-HGATPVPRE------------------------Y 408 (438)
T ss_dssp --------------SBCSEEEEECS--SCHHHHHHHHHH---TTC-CCCEECCTT------------------------S
T ss_pred --------------CeEEEEEEeCC--CCHHHHHHHHHH---CCc-eeccccccc------------------------c
Confidence 01123455553 234566666664 233 11 11110 1
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+++.+|+|++ ..+++++++.+.++|+.+
T Consensus 409 ~~~~lRis~~-~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 409 GENLALFAAT-ELHEEEDLLALREALKEV 436 (438)
T ss_dssp CSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence 1478999999 888888888888888764
No 198
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.82 E-value=3.3e-19 Score=164.32 Aligned_cols=204 Identities=11% Similarity=0.092 Sum_probs=137.9
Q ss_pred EEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCc------eEEEEecCCCCcccccChHHHH
Q 020548 18 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRT------KVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 18 vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~~~~i~ 86 (324)
|+++.+.|+++...++ ..|++++.++.+ |+++|++++ ++++ .+|++++++||||.+.|+++|+
T Consensus 185 v~~s~~~h~s~~~~~~-----~~G~~v~~v~~d~~~~~d~~~L~~~i-~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~ 258 (486)
T 1js3_A 185 AYASDQAHSSVERAGL-----IGGVKLKAIPSDGKFAMRASALQEAL-ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVG 258 (486)
T ss_dssp EEEETTCCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred EEECCCCcHHHHHHHH-----hCCCceEEeecCCCCCCCHHHHHHHH-HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHH
Confidence 7889999999988773 368888888864 899999999 5444 3888899999999999999999
Q ss_pred HHHHhcCCEEEEcCCCCcCC-CCc-cC------CCCcEEEeCCccccccCCCeeEEEEEcC-hhH-HHHHH---Hhhhhh
Q 020548 87 RLAHDKGVTVVVDNTFSPLV-LSP-AR------LGADVVVHSISKFISGGADIIAGAVCGP-ANL-VNSMM---DLHQGA 153 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~~~-~~~-~~------~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~-~~~l~---~~~~~~ 153 (324)
++|+++|+++++|++|+++. ..+ .. .++|.++.|+||++++| .++ |+++.+ +.. .+.+. .+..+.
T Consensus 259 ~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~-G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC-SAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC-EEEEESCHHHHHGGGC---------
T ss_pred HHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce-EEEEEeCHHHHHHHhcCCchhhCCC
Confidence 99999999999999995432 111 11 15899999999999875 564 877664 443 33331 111000
Q ss_pred hh-------------ccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 154 LM-------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 154 ~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
.. ..+........+..+. +...+.+.+++..++++++.+.|++.+ +++..+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------ 404 (486)
T 1js3_A 337 HQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV------------ 404 (486)
T ss_dssp ---CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC------------
T ss_pred cccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC------------
Confidence 00 0011122333333322 234566777888999999999999974 4554322
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
.++++.|.+++ ......+.+.+..
T Consensus 405 -------~~~~v~f~~~~~~~~~~~l~~~L~~ 429 (486)
T 1js3_A 405 -------TLGLVCFRLKGSDGLNEALLERINS 429 (486)
T ss_dssp -------CSSEEEEEESSCHHHHHHHHHHHHH
T ss_pred -------ceeEEEEEecChHHHHHHHHHHHHh
Confidence 24588888863 2234667777663
No 199
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.82 E-value=1.9e-19 Score=164.51 Aligned_cols=263 Identities=12% Similarity=0.081 Sum_probs=157.9
Q ss_pred chHHHHHHHccC-------CC-CEEEEcCCCchhHHHHHhhhcCc---------ccceeEEEecC-------CCHHHHHH
Q 020548 2 SAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---------ACNITTTFVDI-------SDHEMVNS 57 (324)
Q Consensus 2 ~ai~~~~~~~~~-------~g-d~vl~~~p~y~~~~~~~~~~~~~---------~~g~~~~~~~~-------~d~~~l~~ 57 (324)
+|+..+++.+.. +| ++|++.++.|++........... .....+..++. .|+++|++
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~ 225 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA 225 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence 466777766554 55 58999999997754333211000 00112223332 27899999
Q ss_pred hhhc--CCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCcc
Q 020548 58 AIVQ--GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISK 123 (324)
Q Consensus 58 ~l~~--~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK 123 (324)
++.+ +++++|++++ ++|++|.+.+ +++|+++|+++|+++|+||+|.++.... .....|++ |+||
T Consensus 226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK 303 (457)
T 3tfu_A 226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGK 303 (457)
T ss_dssp HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECG
T ss_pred HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EECh
Confidence 8832 6789999999 9999998875 8999999999999999999997664321 12246666 6899
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCc
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLK 200 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 200 (324)
.++++.+|+ |++++++++++.+.....+ .......+..+..++.++..++.+ +...++..++.+++.+.|++...
T Consensus 304 ~l~gG~~~l-G~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~- 381 (457)
T 3tfu_A 304 ALTGGYLSL-AATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARA- 381 (457)
T ss_dssp GGGTTSSCC-EEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGG-
T ss_pred hhhCCCcce-EEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 997733697 9999999999988632110 000111222333322222222221 13455667777888888876531
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 201 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
.|.+. ...+.|.+++++++...+...+.+.+.. .|+ ++.|
T Consensus 382 --~~~v~-------------~vr~~G~~~~i~l~~~~~~~~~~~~l~~---~Gv-----------~v~~----------- 421 (457)
T 3tfu_A 382 --LPAVT-------------DVRVCGAIGVIECDRPVDLAVATPAALD---RGV-----------WLRP----------- 421 (457)
T ss_dssp --STTEE-------------EEEECSSCEEEEESSCCCHHHHHHHHHH---TTE-----------ECCC-----------
T ss_pred --CCCee-------------eeecCCeEEEEEECCcccHHHHHHHHHH---CCe-----------EEEe-----------
Confidence 11110 0113578999999743335667666664 233 1111
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|+++. ...++++++.+.++|+++
T Consensus 422 -------~~~~lRi~p~-~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 422 -------FRNLVYAMPP-YICTPAEITQITSAMVEV 449 (457)
T ss_dssp -------BTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------cCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1368999987 555555555555555443
No 200
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.82 E-value=1.2e-19 Score=164.90 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=120.2
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhh---------cCcccce------eEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRACNI------TTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~------~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++.+.. ++++|++.+|.|+++....... .+...+. .+..++.+|++++++++++ +
T Consensus 122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (434)
T 3l44_A 122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH 201 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC
Confidence 356666665543 6799999999998754322100 0000111 4455666699999999842 5
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.+|.... .....|++ |+||.++ +|+|+
T Consensus 202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~-~G~~i 278 (434)
T 3l44_A 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIG-GGLPI 278 (434)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGG-TTSSC
T ss_pred CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhc-CCcCe
Confidence 7888999988888898877 9999999999999999999997662111 12235554 6899997 58997
Q ss_pred EEEEEcChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 133 AGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
|++++++++++.+..... ...++.++.+.+.++...+..+.. +...++..++++++.+.|++.
T Consensus 279 -G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 343 (434)
T 3l44_A 279 -GAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQ 343 (434)
T ss_dssp -EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred -eeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999999998887754211 011122222222222222221212 234455566666666666653
No 201
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.82 E-value=4.8e-19 Score=161.84 Aligned_cols=264 Identities=11% Similarity=0.073 Sum_probs=156.3
Q ss_pred chHHHHHHHcc-----C---CCCEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecC--------CC------
Q 020548 2 SAISSVLMQLC-----S---SGGHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDI--------SD------ 51 (324)
Q Consensus 2 ~ai~~~~~~~~-----~---~gd~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~--------~d------ 51 (324)
+|+..+++.++ . ++|+|++.+|.|+++........... .......++. .|
T Consensus 118 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
T 3n5m_A 118 EANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYD 197 (452)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHH
Confidence 46677777665 4 78999999999987654332111000 0112333332 13
Q ss_pred ---HHHHHHhhh---cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCC
Q 020548 52 ---HEMVNSAIV---QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLG 113 (324)
Q Consensus 52 ---~~~l~~~l~---~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~ 113 (324)
+++|++++. .+++++|+++++ +| +|.+.+ +++|+++|++||+++|+||+|.++... .....
T Consensus 198 ~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~ 276 (452)
T 3n5m_A 198 VECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVK 276 (452)
T ss_dssp CHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCC
Confidence 899999994 267899999998 99 998875 999999999999999999999766321 11223
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHH---hhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD---LHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRA 187 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 187 (324)
.|++ ++||.+++ | +|+ |++++++++++.+.. ... .......+..+..++.++..++.+ +...++..++.
T Consensus 277 ~di~--t~sK~l~~-G~~~i-g~~~~~~~i~~~~~~~~~~~~-~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 351 (452)
T 3n5m_A 277 PDII--TMAKGITS-AYLPL-SATAVKREIYEAFKGKGEYEF-FRHINTFGGNPAACALALKNLEIIENENLIERSAQMG 351 (452)
T ss_dssp CSEE--EECGGGGT-TSSCC-EEEEEEHHHHGGGCSSSTTCS-CCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCEE--eecccccC-CCcce-EEEEECHHHHHHHhhccCCCC-ccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5655 48899987 8 997 999999998887743 111 000111222333322222222221 23345556666
Q ss_pred HHHHHHHHhC----CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC---------HHHHHHHHHHhhccccccc
Q 020548 188 LIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---------EEKANRLMNYLQNYAQFGF 254 (324)
Q Consensus 188 ~~l~~~L~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~~~~~~l~~~~~~g~ 254 (324)
+++.+.|++. +.....+ +.|.++++.+.. ......+.+.+.. .|+
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gv 409 (452)
T 3n5m_A 352 SLLLEQLKEEIGEHPLVGDIR-------------------GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE---KGL 409 (452)
T ss_dssp HHHHHHHHHHHTTCTTEEEEE-------------------ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH---TTE
T ss_pred HHHHHHHHHHHhcCCCeEEEE-------------------EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH---CCc
Confidence 6666666653 2210111 357788887731 2234456666553 343
Q ss_pred cccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 255 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+. .|...+ .+..++++||+++ ...+++.++.+.++|+++
T Consensus 410 ~~-----------~~~~~~-----------~~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 410 II-----------GRNGMT-----------TAGYNNILTLAPP-LVISSEEIAFVIGTLKTA 448 (452)
T ss_dssp EC-----------EECTTS-----------STTCCCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EE-----------eecCcc-----------cCCCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 21 111110 0112589999988 766666666666666554
No 202
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.82 E-value=9.8e-19 Score=160.08 Aligned_cols=144 Identities=11% Similarity=0.101 Sum_probs=101.3
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhh----------cCcccceeEEEecC----CC--------
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHF----------FPRACNITTTFVDI----SD-------- 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~----------~~~~~g~~~~~~~~----~d-------- 51 (324)
+|+..+++.+.. ++++|++.++.|+++....... .+...+......+. +|
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 467777776653 4699999999998765443211 11101222222222 12
Q ss_pred ----HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC
Q 020548 52 ----HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG 113 (324)
Q Consensus 52 ----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~ 113 (324)
+++|++++.+ +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.++.... ....
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~ 282 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK 282 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 6889988842 57899999999999998765 8999999999999999999997664221 1224
Q ss_pred CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 114 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
.|++ ++||.++++++|+ |++++++++++.+..
T Consensus 283 pdi~--t~sK~l~gG~~~l-g~v~~~~~i~~~~~~ 314 (460)
T 3gju_A 283 PDLI--TIAKGLTSAYAPL-SGVIVADRVWQVLVQ 314 (460)
T ss_dssp CSEE--EECGGGTTTSSCC-EEEEEEHHHHHHHHH
T ss_pred CCee--eeehhhcCCCCCe-EEEEECHHHHHHHhc
Confidence 5665 4789997733797 999999999998864
No 203
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.82 E-value=5.9e-19 Score=163.37 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=125.1
Q ss_pred C-EEEEcCCCchhHHHHHhhhcCcccce-eEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChH
Q 020548 16 G-HVVAARTLYGGTHALLTHFFPRACNI-TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 16 d-~vl~~~p~y~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~ 83 (324)
+ +|+++.+.|+++...+..+ . .|. +++.++.+ |+++|++++.+. ++++|++++++||||.+.|++
T Consensus 189 ~~~v~~s~~~h~s~~~~~~~~-g--~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~ 265 (504)
T 2okj_A 189 KLVLFTSEQSHYSIKKAGAAL-G--FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 265 (504)
T ss_dssp CEEEEEETTSCTHHHHHHHHT-T--SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHH
T ss_pred CeEEEECCcchHHHHHHHHHc-C--CCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHH
Confidence 6 7999999999998887422 1 133 67777764 899999998331 589999999999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-C-----ccC-C-CCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-S-----PAR-L-GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL 154 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-~-----~~~-~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~ 154 (324)
+|+++|+++|+++++|++|+++.. . ... . ++|+++.|+||++++| .++ |+++.++ ++++........+.
T Consensus 266 ~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~-g~l~~~~~~~~~~~~~~~~~~l 343 (504)
T 2okj_A 266 EIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQC-SAILVKEKGILQGCNQMCAGYL 343 (504)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCC-EEEEESSTTHHHHHHCCCCSSS
T ss_pred HHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cce-EEEEEECHHHHHHHhcCCCccc
Confidence 999999999999999999954432 1 112 2 6899999999999876 454 8886654 56654322111110
Q ss_pred hccCC-----------------CCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeC
Q 020548 155 MLLGP-----------------TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLY 203 (324)
Q Consensus 155 ~~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 203 (324)
...+. .......+..+. +...+.+..++..++++++.+.|++. ++++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 412 (504)
T 2okj_A 344 FQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 412 (504)
T ss_dssp CCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESS
T ss_pred cCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00000 012333333222 22345667777889999999999987 445543
No 204
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.81 E-value=8.4e-19 Score=160.49 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=102.0
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhhc----------CcccceeEEEecC----C---C-----
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFF----------PRACNITTTFVDI----S---D----- 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~~----------~~~~g~~~~~~~~----~---d----- 51 (324)
+|+..+++.+++ ++++|++.+|.|+++........ +...+.....++. . |
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 201 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHH
Confidence 467777777654 57999999999997664432211 1101222222221 1 2
Q ss_pred ---HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCC
Q 020548 52 ---HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA 114 (324)
Q Consensus 52 ---~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~ 114 (324)
+++|++++.+ +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.++.... .....
T Consensus 202 ~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~p 281 (459)
T 4a6r_A 202 VVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQP 281 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCC
Confidence 7888888842 56788999988888888876 8999999999999999999997664221 12245
Q ss_pred cEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 115 DVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 115 d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
|+++ +||.++++++|+ |++++++++++.+.
T Consensus 282 di~t--~sK~l~gg~~~l-g~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 282 DLFT--AAKGLSSGYLPI-GAVFVGKRVAEGLI 311 (459)
T ss_dssp SEEE--ECGGGGTTSSCC-EEEEECHHHHHHHH
T ss_pred Ceee--hhhhhcCCCCCc-cceeeCHHHHHHhh
Confidence 6664 789998866897 99999999999887
No 205
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.81 E-value=2.4e-18 Score=164.00 Aligned_cols=191 Identities=11% Similarity=0.047 Sum_probs=129.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH-HhhhcCcccceeEEEecC----------CCHHHH-----HHhhhcCC--
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDI----------SDHEMV-----NSAIVQGR-- 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~-~~~~~~~~~g~~~~~~~~----------~d~~~l-----~~~l~~~~-- 63 (324)
+|+..++.+++++||+|+++.++|.++... + +..|.++++++. .|++++ ++++ +++
T Consensus 200 ~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~-----~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i-~~~~~ 273 (730)
T 1c4k_A 200 NANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-----AMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELA-AKVDP 273 (730)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-----TTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHT-TTSSH
T ss_pred HHHHHHHHHhcCCCCEEEEcCCchHHHHHHHH-----HHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHh-hcCCc
Confidence 467888889999999999999999998876 4 236777776643 156666 8888 443
Q ss_pred ----c----eEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCC-------CccCC---CCc----EEEeC
Q 020548 64 ----T----KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-------SPARL---GAD----VVVHS 120 (324)
Q Consensus 64 ----~----~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~-------~~~~~---~~d----~~~~S 120 (324)
+ +++++++| |++|.+.|+++|+++|+++|+++++|++|+. +.+ .+... ++| ++++|
T Consensus 274 ~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S 352 (730)
T 1c4k_A 274 ERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQS 352 (730)
T ss_dssp HHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEEC
T ss_pred ccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEEC
Confidence 4 89999998 6899999999999999999999999999942 222 23333 677 99999
Q ss_pred CccccccCCCeeEEEEEcChhH---------HHHHHHhhhhhhhccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHH
Q 020548 121 ISKFISGGADIIAGAVCGPANL---------VNSMMDLHQGALMLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHR 186 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~ 186 (324)
+||+++++.. +|+++.+++. ...+..... ....++++....+. +...+. .-..+.++..++
T Consensus 353 ~hK~L~g~~~--gg~I~v~~~~l~g~~~~i~~~~~~~~~~---~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~ 427 (730)
T 1c4k_A 353 VHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFN---LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLIT 427 (730)
T ss_dssp HHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHH---HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--EEEEEecchhhcCcccccCHHHHHHHHH---HhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999876432 3677433222 122222221 12333444332221 111111 134566778889
Q ss_pred HHHHHHHHHh--CCCceeCC
Q 020548 187 ALIFARRMKK--LGLKVLYP 204 (324)
Q Consensus 187 ~~~l~~~L~~--~~~~~~~p 204 (324)
++++++.|++ .++++..|
T Consensus 428 a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 428 TIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHhhhCCCeEEccc
Confidence 9999999998 35565444
No 206
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.81 E-value=1e-18 Score=160.77 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=166.8
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~ 83 (324)
+++.|+++.+.|.++...+. ..|.+++.++.+ |+++|++++.+. .+.+|+++.++|++|.+.|++
T Consensus 187 ~~~~v~~s~~~H~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~ 261 (481)
T 4e1o_A 187 ARLVAYASDQAHSSVEKAGL-----ISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLS 261 (481)
T ss_dssp TTEEEEEETTSCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred CCeEEEEcCcchHHHHHHHH-----hCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHH
Confidence 67899999999999988873 367888888864 899999998322 167788899999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcC-CCCc----cCCC---CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPL-VLSP----ARLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 155 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~-~~~~----~~~~---~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~ 155 (324)
+|+++|++||+++++|++|++. ...+ ...+ +|.++.++||+++.|... +++++.++.+..........+..
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~ 340 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIYLR 340 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGGGC
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchhcc
Confidence 9999999999999999999443 2221 1113 599999999999887666 46667776654332111110100
Q ss_pred ---------------ccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 156 ---------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 156 ---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
..+........+..+. +...+++.+++..++++++.+.|++. ++++..|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~------------ 408 (481)
T 4e1o_A 341 HANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR------------ 408 (481)
T ss_dssp CTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC------------
T ss_pred CcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------
Confidence 0111122333333332 33446778888899999999999998 44554333
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
..++++|.+++ ......+.+++.. .|.+.+ .|... .....+|+++
T Consensus 409 -------~~~~v~f~~~~~~~~~~~l~~~L~~---~g~~~~----------~~~~~--------------~g~~~lR~~~ 454 (481)
T 4e1o_A 409 -------HLGLVVFRLKGPNSLTENVLKEIAK---AGRLFL----------IPATI--------------QDKLIIRFTV 454 (481)
T ss_dssp -------CSSEEEEEESSCHHHHHHHHHHHHH---HCSSBC----------EEEEE--------------TTEEEEEEEC
T ss_pred -------ceeEEEEEeCCchHHHHHHHHHHHh---CCeEEE----------EeeEE--------------CCEEEEEEEe
Confidence 35688999863 4456777777764 222111 11110 0135799998
Q ss_pred ccCC-CHHHHHHHHHHHHHhhh
Q 020548 297 GYLG-TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 297 g~~~-~~~~~~~~l~~~l~~~~ 317 (324)
+ .. +++++++.+.++++++.
T Consensus 455 ~-~~~tt~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 455 T-SQFTTRDDILRDWNLIRDAA 475 (481)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHH
Confidence 7 54 35666666666665553
No 207
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.81 E-value=1.8e-18 Score=160.44 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=122.5
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~ 83 (324)
+|+++.+.|+++...++. .|. +++.++.+ |+++|++++.+. ++++|++++++|+||.+.|++
T Consensus 205 ~vl~s~~~h~s~~~~~~~-----~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~ 279 (515)
T 2jis_A 205 ALFTSKECHYSIQKGAAF-----LGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLE 279 (515)
T ss_dssp EEEEETTSCTHHHHHHHH-----TTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred EEEECCCccHHHHHHHHH-----cCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHH
Confidence 899999999999888742 344 67777754 899999998331 589999999999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-Cc-----c-CC-CCcEEEeCCccccccCCCeeEEEEEcChh--HHHHHH----Hh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-SP-----A-RL-GADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMM----DL 149 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-~~-----~-~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~--~~~~l~----~~ 149 (324)
+|+++|+++|+++++|++|+++.. .+ . .. ++|+++.|+||++++|. .+ |+++.+++ +++... .+
T Consensus 280 ~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~-G~l~~~~~~~~~~~~~~~~~~y 357 (515)
T 2jis_A 280 AIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QC-SALLLQDTSNLLKRCHGSQASY 357 (515)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESCCSCHHHHHHCC----
T ss_pred HHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC-Ce-eEEEEeChHHHHHHHhcCCchh
Confidence 999999999999999999954432 21 1 22 68999999999998653 44 77766544 655432 11
Q ss_pred hhhhhh-------c------cCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeC
Q 020548 150 HQGALM-------L------LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLY 203 (324)
Q Consensus 150 ~~~~~~-------~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 203 (324)
..+... . .+-.......+..+. +...++...++..++++++.+.|++. ++++..
T Consensus 358 l~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~ 427 (515)
T 2jis_A 358 LFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVM 427 (515)
T ss_dssp -----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred ccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 110000 0 000111233222222 22335567777889999999999987 445543
No 208
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.81 E-value=2.5e-19 Score=163.69 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=113.8
Q ss_pred chHHHHHHH---ccCCCCEEEEcCCCchhHHHHHhhhc------Ccccce------eEEEecCCCHHHHHHhhhc--CCc
Q 020548 2 SAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF------PRACNI------TTTFVDISDHEMVNSAIVQ--GRT 64 (324)
Q Consensus 2 ~ai~~~~~~---~~~~gd~vl~~~p~y~~~~~~~~~~~------~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~ 64 (324)
+|+..+++. +.+ +++|++.+|+|+++........ +...|+ .+..++..|++++++++++ +++
T Consensus 124 eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (453)
T 2cy8_A 124 ETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDI 202 (453)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCE
Confidence 467777776 555 5789999999987654321100 111233 2445555699999999843 478
Q ss_pred eEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEE
Q 020548 65 KVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++|++++++|++|.+.+ +++|+++|++||+++|+||+|+++.... .....|++ |+||++++ |.++ |
T Consensus 203 ~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G 278 (453)
T 2cy8_A 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASAG-GLPG-G 278 (453)
T ss_dssp EEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGGT-TSSC-E
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhhC-Ccce-E
Confidence 89988888888998877 9999999999999999999997662211 12245755 78999986 8896 9
Q ss_pred EEEcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHhC
Q 020548 135 AVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
++++++++++.+.....+ .......+..+..++.+...++. .+...++..++++++.+.|++.
T Consensus 279 ~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 279 ILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp EEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999888766541000 00011112223322222222222 2334556677778888877764
No 209
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.80 E-value=7.6e-19 Score=160.30 Aligned_cols=143 Identities=14% Similarity=0.138 Sum_probs=92.0
Q ss_pred chHHHHHHHccC----CC----CEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecCC---------------
Q 020548 2 SAISSVLMQLCS----SG----GHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDIS--------------- 50 (324)
Q Consensus 2 ~ai~~~~~~~~~----~g----d~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~~--------------- 50 (324)
+|+..+++.+.. +| |+|++.+|+|++............ ....+..++.+
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 467777776654 44 999999999987653331110000 00112333332
Q ss_pred -CHHHHHHhhh--cCCceEEEEecCC-CCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCc
Q 020548 51 -DHEMVNSAIV--QGRTKVLYFESIS-NPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGAD 115 (324)
Q Consensus 51 -d~~~l~~~l~--~~~~~~v~~~~~~-nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d 115 (324)
|+++|+++++ .+++++|++++++ |++|...+ +++|+++|++||+++|+||+|+++... ......|
T Consensus 195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d 274 (448)
T 3dod_A 195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD 274 (448)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC
Confidence 3889999884 2578899999988 99997765 899999999999999999999766321 1122356
Q ss_pred EEEeCCccccccCC-CeeEEEEEcChhHHHHHHH
Q 020548 116 VVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 116 ~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~ 148 (324)
++ ++||.+++ | .|+ |++++++++++.+..
T Consensus 275 i~--t~sK~l~~-G~~~i-g~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 275 LM--AAGKGITG-GYLPI-AVTFATEDIYKAFYD 304 (448)
T ss_dssp EE--EECGGGGT-TSSCC-EEEEEEHHHHHTTCS
T ss_pred EE--EecccccC-CcCce-EEEEECHHHHHHhhh
Confidence 55 58899977 8 597 999999999888764
No 210
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.80 E-value=1.3e-18 Score=158.94 Aligned_cols=222 Identities=15% Similarity=0.132 Sum_probs=128.8
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCc------c---cceeEEEecCC----C-------------HH
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR------A---CNITTTFVDIS----D-------------HE 53 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~------~---~g~~~~~~~~~----d-------------~~ 53 (324)
+|+..+++... ..+++|++.+++|++........... . ....+..++.+ | ++
T Consensus 136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (453)
T 4ffc_A 136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS 215 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence 46677776543 24589999999998765444222110 0 01123333332 2 35
Q ss_pred HHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCc
Q 020548 54 MVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSIS 122 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~s 122 (324)
.+++.+..+++++|++++.++..|.+.+ +++|+++|++||+++|+||+|.++.... .....|++ ++|
T Consensus 216 ~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~s 293 (453)
T 4ffc_A 216 RIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMA 293 (453)
T ss_dssp HHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EEC
T ss_pred HHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchH--hhh
Confidence 6666662345677777766666666655 8999999999999999999997664221 12234555 588
Q ss_pred cccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh----CC
Q 020548 123 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LG 198 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~ 198 (324)
|.+++ |+|+ ||+++++++++.+.+... ..++.++.+.+.++...+..+. .+...++..++.+++.+.|++ ++
T Consensus 294 K~~~~-G~~~-G~~~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~ 369 (453)
T 4ffc_A 294 KGIAG-GMPL-SAVTGRAELMDAVYAGGL-GGTYGGNPVTCAAAVAALGVMR-ELDLPARARAIEASVTSRLSALAEEVD 369 (453)
T ss_dssp GGGGT-TSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhcC-CcCe-EEEEECHHHHhhhcccCc-CCCCCcCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99988 8997 999999998887765443 1122223222222222222111 112334444555555555544 33
Q ss_pred CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-------CHHHHHHHHHHhhc
Q 020548 199 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKANRLMNYLQN 248 (324)
Q Consensus 199 ~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-------~~~~~~~~~~~l~~ 248 (324)
.....+ +.|.++++.+. +......+.+.+..
T Consensus 370 ~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 407 (453)
T 4ffc_A 370 IIGEVR-------------------GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS 407 (453)
T ss_dssp SEEEEE-------------------EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH
T ss_pred CeEEEE-------------------eeceEEEEEEecCcccCCCHHHHHHHHHHHHh
Confidence 211111 35779999883 34456667777664
No 211
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.80 E-value=1.9e-18 Score=157.81 Aligned_cols=260 Identities=16% Similarity=0.134 Sum_probs=151.3
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCc------c---cceeEEEecCC------------------CH
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR------A---CNITTTFVDIS------------------DH 52 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~------~---~g~~~~~~~~~------------------d~ 52 (324)
+|+..+++.... .+++|++..++|++........... . ....+..++.. ++
T Consensus 133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (451)
T 3oks_A 133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence 466777765543 4589999999998765444221110 0 11123344332 24
Q ss_pred HHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 53 EMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 53 ~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
+.+++.++ .+++++|++++.+++.|.+.+ +++|+++|++||+++|+||+|.++... ......|++
T Consensus 213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~ 292 (451)
T 3oks_A 213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI 292 (451)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee
Confidence 44444442 246788888887777777765 999999999999999999999766321 112245665
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh-
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK- 196 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 196 (324)
|+||.+++ |+|+ ||+++++++++.+.+... ..++.++.+.+.++...+..+.. +...++..++.+++.+.|++
T Consensus 293 --t~sK~l~~-G~~i-G~v~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 366 (451)
T 3oks_A 293 --VTAKGIAG-GLPL-SAVTGRAEIMDSPHVSGL-GGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRL 366 (451)
T ss_dssp --EECGGGGT-TSSC-EEEEEEHHHHTCSCTTSB-CCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred --eehhhhhC-Ccce-EEEEECHHHHhhhcCCCc-CCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH
Confidence 68899987 8997 999999998887765433 11122222222222222221111 12344455555555555554
Q ss_pred ---CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe-------CCHHHHHHHHHHhhccccccccccccCCcccee
Q 020548 197 ---LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-------ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 197 ---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-------~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
++.....+ +.|.++++.+ ++......+.+.+.. .|++
T Consensus 367 ~~~~~~~~~~~-------------------~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gv~----------- 413 (451)
T 3oks_A 367 QAEDDRIGDVR-------------------GRGAMIAMELVKAGTTEPDADLTKALCAGAHA---AGVI----------- 413 (451)
T ss_dssp HHHCTTEEEEE-------------------EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH---TTEE-----------
T ss_pred HhhCCCeEEEE-------------------EeeEEEEEEEecCccCCCCHHHHHHHHHHHHh---CCcE-----------
Confidence 33211111 3577999988 334456677777664 3331
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..|. +..++.+|+++. ...+++.++.+.++|+++
T Consensus 414 v~~~---------------~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 447 (451)
T 3oks_A 414 VLSC---------------GTYGNVVRFLPP-LSIGDDLLNEGLDVLEEV 447 (451)
T ss_dssp CEEE---------------CTTSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EecC---------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1221 112478999988 665666565555555443
No 212
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.80 E-value=1.3e-19 Score=164.61 Aligned_cols=223 Identities=14% Similarity=0.172 Sum_probs=140.6
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++.. ..++++|++.+|+|+++........ +...|+ .+..++..|++++++++++ +
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 202 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGD 202 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCC
Confidence 4666777651 3346889999999987543221000 011232 2455556799999999843 4
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++.+|++|.+.+ +++|.++|++||+++|+||+|+++.... .....|++ |+||.+++ |.++
T Consensus 203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~ 279 (434)
T 2epj_A 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGG-GFPV 279 (434)
T ss_dssp GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGT-TSSC
T ss_pred CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcC-Ccce
Confidence 7889999888889999887 9999999999999999999997663211 12246664 78999987 8996
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhC----CCceeCCCC
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKL----GLKVLYPGL 206 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~p~~ 206 (324)
|++++++++++.+....... .....+..+..++.+...++.+ +...++..++++++.+.|++. +.....+
T Consensus 280 -G~v~~~~~~~~~l~~~~~~~-~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-- 355 (434)
T 2epj_A 280 -GAVAGSREVMSLLTPQGKVF-NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTIN-- 355 (434)
T ss_dssp -EEEEECHHHHTTBTTTSSBC-CCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE--
T ss_pred -eeeeecHHHHHhhccCCCcc-cCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE--
Confidence 99999988877665421100 0111123333332222222222 234556677788888888764 3321111
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCC-------------HHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------------~~~~~~~~~~l~~ 248 (324)
+.|.++++.++. ......+.+.+..
T Consensus 356 -----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 393 (434)
T 2epj_A 356 -----------------RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR 393 (434)
T ss_dssp -----------------EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH
T ss_pred -----------------EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH
Confidence 257799999864 2345667777663
No 213
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.6e-18 Score=160.23 Aligned_cols=250 Identities=11% Similarity=0.064 Sum_probs=156.3
Q ss_pred CC-EEEEcCCCchhHHHHHhhhcCcccce-eEEEecCC-----CHHHHHHhhhcC---Cc--eEEEEecCCCCcccccCh
Q 020548 15 GG-HVVAARTLYGGTHALLTHFFPRACNI-TTTFVDIS-----DHEMVNSAIVQG---RT--KVLYFESISNPTLAVANI 82 (324)
Q Consensus 15 gd-~vl~~~p~y~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~---~~--~~v~~~~~~nptG~~~~~ 82 (324)
|| +|+++.+.|.++...+.... .|. +++.++.+ |+++|++++.+. ++ .+|+++.++|+||.+.|+
T Consensus 201 g~~~v~~s~~~h~s~~~~~~~~g---~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l 277 (497)
T 2qma_A 201 DKLRIVCSKKSHFTVQKSASWMG---LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDL 277 (497)
T ss_dssp GGEEEEEETTSCTHHHHHHHHTT---SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred CCeEEEECCCchHHHHHHHHHcC---CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCH
Confidence 46 89999999999888774221 133 57777664 889999988322 23 488889999999999999
Q ss_pred HHHHHHHHhcCCEEEEcCCCCcCCC-Ccc-----CC-CCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhh
Q 020548 83 PELSRLAHDKGVTVVVDNTFSPLVL-SPA-----RL-GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 154 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~~~~~~-~~~-----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~ 154 (324)
++|+++|+++|+++++|++|+++.. .+. .. ++|+++.|+||++++| .++ |+++. ++..++.+..... +.
T Consensus 278 ~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-~~~-G~l~~~~~~~~~~~~~~~~-yl 354 (497)
T 2qma_A 278 DFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-ISC-GALLVNDKSNFKFLLHHAD-YL 354 (497)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-SSC-EEEEESCGGGGGGGCC------
T ss_pred HHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-cce-EEEEEeCHHHHHHhcCCch-hc
Confidence 9999999999999999999954432 221 12 5799999999999886 465 77754 4443333211000 00
Q ss_pred hccC---CC-----------CCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 155 MLLG---PT-----------MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 155 ~~~~---~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
...+ +. ......+..+. +...+...+++..++++++.+.|++.+ +++..|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------ 422 (497)
T 2qma_A 355 NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP------------ 422 (497)
T ss_dssp ---------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC------------
T ss_pred CCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC------------
Confidence 0000 00 11222222222 233456777888999999999999874 4553332
Q ss_pred HhccCCCcceEEEEEeCCH-----HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 218 MANKEYGFGGLLCLDMETE-----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
.+++++|.+.+. .....+.+.+.. .|++.. +... .+ ..+++
T Consensus 423 -------~~~~v~f~~~~~~~~~~~l~~~l~~~l~~---~G~~~~-----------~~~~------------~~-g~~~l 468 (497)
T 2qma_A 423 -------SLSTVLFRATHETADLDELNKALRLEALT---RGIAVL-----------GETI------------VD-GKTAL 468 (497)
T ss_dssp -------SSSEEEEEECCSSSCHHHHHHHHHHHHHH---HTSCBC-----------EEEE------------ET-TEEEE
T ss_pred -------CceEEEEEEcCCccCHHHHHHHHHHHHHh---CCCEEE-----------EeeE------------EC-CEEEE
Confidence 355889988632 112345555442 333111 1000 00 13689
Q ss_pred EEEe-ccCCCHHHHHHHHHHHHHhhh
Q 020548 293 RMSV-GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 293 R~s~-g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|+|+ + ..+++++++.+.++|+.+.
T Consensus 469 Ris~~~-~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 469 KFTILN-PCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp EEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 9999 6 6777777877777776654
No 214
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.79 E-value=2.2e-18 Score=158.04 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=121.0
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhhcC---------cccceeEEEecC----C---C------
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFP---------RACNITTTFVDI----S---D------ 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~~~---------~~~g~~~~~~~~----~---d------ 51 (324)
+|+..+++.+.. ++++|++.++.|+++......... ...+......+. . |
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~ 206 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGL 206 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHH
Confidence 356667766553 468999999999876543321111 001332322222 1 1
Q ss_pred --HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCc
Q 020548 52 --HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGAD 115 (324)
Q Consensus 52 --~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d 115 (324)
+++|++.+.+ +++++|++++++|++|.+.+ +++|+++|+++|+++|+||+|.+|.... .....|
T Consensus 207 ~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd 286 (472)
T 3hmu_A 207 ARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH 286 (472)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCc
Confidence 7888888832 57899999999999999876 9999999999999999999997764321 123467
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHH-HHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHC-HRALIFAR 192 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~ 192 (324)
+++ ++|.++++++|+ |++++++++++.+....... ....+..+..++.++..++.+ +...++.. ++.+++.+
T Consensus 287 i~t--~sK~l~gg~~pl-G~v~~~~~i~~~~~~~~~~~--~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~ 361 (472)
T 3hmu_A 287 IMT--IAKGLSSGYAPI-GGSIVCDEVAHVIGKDEFNH--GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKE 361 (472)
T ss_dssp EEE--ECGGGTTTSSCC-EEEEEEHHHHHHHTTSCBCC--CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHH
T ss_pred eee--echhhhcCCcce-EEEEECHHHHHhcccCCccc--cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 775 789998866897 99999999998883211000 111122233333222222222 23455566 77778888
Q ss_pred HHHhC
Q 020548 193 RMKKL 197 (324)
Q Consensus 193 ~L~~~ 197 (324)
.|+++
T Consensus 362 ~L~~l 366 (472)
T 3hmu_A 362 KWEAL 366 (472)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 88664
No 215
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.79 E-value=6.1e-19 Score=160.05 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=123.5
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhh---------cCcccc------eeEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRACN------ITTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g------~~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++.+.. ++++|++.+|.|++........ .+...+ ..+..++.+|+++++++++. +
T Consensus 120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 3k28_A 120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD 199 (429)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 356666665443 5789999999998654322100 000001 13445556699999998842 5
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.++.... .....|++ ++||.+++ |+|+
T Consensus 200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~i 276 (429)
T 3k28_A 200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLT--CLGKVIGG-GLPV 276 (429)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSCC
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCcee--hhhhhhcC-CCCe
Confidence 6889999988888998887 9999999999999999999997662111 12235554 58899976 8997
Q ss_pred EEEEEcChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 133 AGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
|++++++++++.+..... ...++.++.+.+.++...+.... ++..++..++++++.+.|++.
T Consensus 277 -G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--~~~~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 277 -GAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--PESYVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp -EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887754321 01112222222222222333333 566677788888888888764
No 216
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.79 E-value=3e-18 Score=157.19 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=162.0
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++++|+++.+.|.++...+. ..|.+++.++.+ |+++|++++... .+.+|+++.++|++|.+.|+++
T Consensus 181 ~~~~vi~s~~~H~s~~~~~~-----~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~ 255 (475)
T 3k40_A 181 GKLVGYCSDQAHSSVERAGL-----LGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDE 255 (475)
T ss_dssp HHEEEEEETTSCHHHHHHHH-----HHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred CCeEEEECCCchHHHHHHHH-----HcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHH
Confidence 45789999999999988873 368888888874 899999998322 1677888999999999999999
Q ss_pred HHHHHHhcCCEEEEcCCCCcC-CCCcc----CC---CCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhh-
Q 020548 85 LSRLAHDKGVTVVVDNTFSPL-VLSPA----RL---GADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGAL- 154 (324)
Q Consensus 85 i~~l~~~~~~~~ivD~~~~~~-~~~~~----~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~- 154 (324)
|+++|+++|+++++|++|++. ...+. .. .+|.++.|+||++++|... +++++.+++... .+.....+..
T Consensus 256 I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~ 334 (475)
T 3k40_A 256 CGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC-SAMWLKDPSWVVNAFNVDPLYLKH 334 (475)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESSGGGC-------------
T ss_pred HHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCce-EEEEEeCHHHHHHHhcCCccccCC
Confidence 999999999999999999442 22211 11 3699999999999876555 355566665432 2211111000
Q ss_pred ------------hccCC-CCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHH
Q 020548 155 ------------MLLGP-TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 155 ------------~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~ 218 (324)
...++ .......+..+. +...++..+++..++++++.+.|++. ++++..|.
T Consensus 335 ~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~------------- 401 (475)
T 3k40_A 335 DMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI------------- 401 (475)
T ss_dssp --------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-------------
T ss_pred CcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------
Confidence 00001 012223333222 23446677888899999999999998 44655443
Q ss_pred hccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 219 ANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
..++++|.++ ......++.+++.. .|.+. +.|... .....+|++++
T Consensus 402 ------~~~iv~f~~~~~~~~~~~l~~~L~~---~g~~~----------~~~~~~--------------~g~~~lR~~~~ 448 (475)
T 3k40_A 402 ------NMGLVCFRLKGSNERNEALLKRING---RGHIH----------LVPAKI--------------KDVYFLRMAIC 448 (475)
T ss_dssp ------BTTEEEEEESSCHHHHHHHHHHHHH---HTSCB----------CEEEEE--------------TTEEEEEEECC
T ss_pred ------ceEEEEEEeCCchHHHHHHHHHHHh---CCcEE----------EEeeEE--------------CCEEEEEEEeC
Confidence 3568899986 34456777777774 22211 111111 01368999987
Q ss_pred cCC-CHHHHHHHHHHHHHhhh
Q 020548 298 YLG-TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 298 ~~~-~~~~~~~~l~~~l~~~~ 317 (324)
.. +++++++.+.++++++.
T Consensus 449 -~~~tt~~di~~~~~~i~~~~ 468 (475)
T 3k40_A 449 -SRFTQSEDMEYSWKEVSAAA 468 (475)
T ss_dssp -CTTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHH
Confidence 44 45666666666665543
No 217
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.79 E-value=1.8e-17 Score=159.34 Aligned_cols=184 Identities=14% Similarity=0.073 Sum_probs=126.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~-~~~~ 65 (324)
+|+..++.++++|||+|+++.|+|.++...+. ..|.++++++.. |++++++++++ ++++
T Consensus 232 ~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-----~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k 306 (755)
T 2vyc_A 232 GSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-----LTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTK 306 (755)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTG
T ss_pred HHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCcccc
Confidence 46888889999999999999999999888773 267888777542 79999999843 2454
Q ss_pred --------EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCC-------ccCCC--CcE------EEeCC
Q 020548 66 --------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS-------PARLG--ADV------VVHSI 121 (324)
Q Consensus 66 --------~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~-------~~~~~--~d~------~~~S~ 121 (324)
++++++| ||+|.+.|+++|+++|+++|+++++|++|+. +.+. +. .+ +|+ +++|+
T Consensus 307 ~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~ 384 (755)
T 2vyc_A 307 DKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHST 384 (755)
T ss_dssp GGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEET
T ss_pred ccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECc
Confidence 8999998 7999999999999999999999999999943 2221 22 35 566 99999
Q ss_pred ccccccCCCeeEEEEEcChh---H-HHHHHHhhhhhhhccCCCCCHHHHHH---HhcCccc--HHHHHHHHHHHHHHHHH
Q 020548 122 SKFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMNPKVAFE---LSERIPH--LGLRMKEHCHRALIFAR 192 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~l~~ 192 (324)
||+++++.. +|+++.+.+ + ...+..... ....++++....+. +...+.. ...+.++..++.+++++
T Consensus 385 hK~L~g~~~--g~~i~~~~~~~~i~~~~~~~~~~---~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~ 459 (755)
T 2vyc_A 385 HKLLNALSQ--ASYIHVREGRGAINFSRFNQAYM---MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQ 459 (755)
T ss_dssp TTSSSCCTT--CEEEEEECCBTCCCHHHHHHHHH---HTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCC--eeeeeecCcccccCHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999876432 366655433 2 123332221 12233444332221 1111111 34566777888888888
Q ss_pred HHHhC
Q 020548 193 RMKKL 197 (324)
Q Consensus 193 ~L~~~ 197 (324)
.|++.
T Consensus 460 ~L~~l 464 (755)
T 2vyc_A 460 AMARL 464 (755)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
No 218
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.78 E-value=1.8e-19 Score=164.47 Aligned_cols=246 Identities=12% Similarity=0.081 Sum_probs=146.0
Q ss_pred CCEEEEcCCCchhHHHHHhhhcC-----c----ccceeEEEecCCC---------------HHHHHHhhh--cCCceEEE
Q 020548 15 GGHVVAARTLYGGTHALLTHFFP-----R----ACNITTTFVDISD---------------HEMVNSAIV--QGRTKVLY 68 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~-----~----~~g~~~~~~~~~d---------------~~~l~~~l~--~~~~~~v~ 68 (324)
||+|++.+|.|+++......... + .+...+..++.+| +++|+++++ .+++++|+
T Consensus 157 ~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi 236 (449)
T 2cjg_A 157 GTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFV 236 (449)
T ss_dssp CCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEE
Confidence 89999999999875442211100 0 0112445555444 234888874 26789999
Q ss_pred EecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 69 FESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 69 ~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+++++||+|...+ +++|+++|++||+++|+||+|+++.... .....|++ |+||++ ++ |+++
T Consensus 237 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-----~i-G~~~ 308 (449)
T 2cjg_A 237 AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT-----QV-CGVM 308 (449)
T ss_dssp ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG-----SS-EEEE
T ss_pred EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc-----cE-EEEE
Confidence 9988999997665 9999999999999999999997663221 12346765 588998 44 9998
Q ss_pred cChhHHHHHHH--hhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCC-CCCCchh
Q 020548 138 GPANLVNSMMD--LHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHH 212 (324)
Q Consensus 138 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~-~~~~~~~ 212 (324)
+++++++.+.+ ..... ........+..+..+...++.+ +...++..++++++.+.|++....+ |. +.
T Consensus 309 ~~~~~~~~l~~~~~~~~~-~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~--~~~~~----- 380 (449)
T 2cjg_A 309 AGRRVDEVADNVFAVPSR-LNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF--PAVVL----- 380 (449)
T ss_dssp ECGGGGGSTTCTTTSTTS-SCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHS--TTTSE-----
T ss_pred ECHHHhhhhhhcccCCcc-cccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC--CCcee-----
Confidence 88888775322 00000 0111112222222222222221 2345666788888888887642100 10 00
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
...+.|.++++++++......+.+.+.. .|++ +.|. + ++++
T Consensus 381 --------~~~~~g~~~~~~~~~~~~~~~~~~~l~~---~Gv~-----------v~~~---------------g--~~~i 421 (449)
T 2cjg_A 381 --------DPRGRGLMCAFSLPTTADRDELIRQLWQ---RAVI-----------VLPA---------------G--ADTV 421 (449)
T ss_dssp --------EEEEETTEEEEECSSHHHHHHHHHHHHH---TTEE-----------CEEE---------------T--TTEE
T ss_pred --------eEeeccEEEEEEECChHHHHHHHHHHHH---CCeE-----------EecC---------------C--CCEE
Confidence 0012577899999764456677777663 2331 1111 1 3789
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
|++++ ...+++.++.+.++|+++
T Consensus 422 Ri~~~-~~~t~e~i~~~l~~l~~~ 444 (449)
T 2cjg_A 422 RFRPP-LTVSTAEIDAAIAAVRSA 444 (449)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EEECC-CCCCHHHHHHHHHHHHHH
Confidence 99988 766666666666665544
No 219
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.78 E-value=1.9e-18 Score=156.48 Aligned_cols=221 Identities=17% Similarity=0.161 Sum_probs=138.1
Q ss_pred chHHHHHHH---ccCCCCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--
Q 020548 2 SAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ-- 61 (324)
Q Consensus 2 ~ai~~~~~~---~~~~gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~-- 61 (324)
+|+..+++. +. +++.|++.+|+|+++........ +...|+ .+..++..|++++++++++
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 197 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRG 197 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCC
Confidence 356666664 44 45889999999987543221100 011232 3455666799999999842
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCe
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADI 131 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r 131 (324)
+++++|++++.++++|.+.+ +++|.++ ++||+++|+||+|+++.... .....|++ |+||++++ |.+
T Consensus 198 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~ 273 (424)
T 2e7u_A 198 EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGG-GLP 273 (424)
T ss_dssp GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSS
T ss_pred CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhC-Ccc
Confidence 46788888766666998877 9999999 99999999999997663211 12245655 78999986 899
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhC----CCceeCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKL----GLKVLYP 204 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~----~~~~~~p 204 (324)
+ |++++++++++.+....... .....+.++..++.+...++.+ +...++..++++++.+.|++. +.....+
T Consensus 274 ~-G~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 351 (424)
T 2e7u_A 274 A-AAYAGRREIMEKVAPLGPVY-QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVN 351 (424)
T ss_dssp C-EEEEECHHHHTTBTTTSSBC-CCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred e-EEEEEcHHHHhhhcccCCcc-cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 6 99999998887765421100 0111122333322222222222 335566677888888888764 3311111
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCC-------------HHHHHHHHHHhhc
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMNYLQN 248 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------------~~~~~~~~~~l~~ 248 (324)
+.|.++++.+.. ......+.+.+..
T Consensus 352 -------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 389 (424)
T 2e7u_A 352 -------------------RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD 389 (424)
T ss_dssp -------------------EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT
T ss_pred -------------------eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH
Confidence 257799999863 2345567776653
No 220
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=152.29 Aligned_cols=259 Identities=10% Similarity=0.037 Sum_probs=166.3
Q ss_pred chHHHHHHHccCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+++++.+++++ ||+|++...++.+. .+...+.+ .|..+..++.+ ++++++..+ ++++++|.+++..|
T Consensus 88 ~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~-~G~~~~~~~~~~~~~~~~~~~~~~i-~~~t~lV~~~h~et 163 (377)
T 3e77_A 88 GQFSAVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKK-FGTINIVHPKLGSYTKIPDPSTWNL-NPDASYVYYCANET 163 (377)
T ss_dssp HHHHHHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTT-TSEEEECSCCCSSSCSCCCGGGCCC-CTTCSCEEEESEET
T ss_pred HHHHHHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHH-hCCceEEeccCCCcCCCCChHHhcc-CCCccEEEEeCccC
Confidence 3678888888765 99998888776654 33345555 78877766543 456666667 78999999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.||.+.|+ +|+++|+++++|.++ +....+..+++ ++++|.+|++|++| .|+++.++++++.+.+....
T Consensus 164 ~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G---~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 164 VHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG---VTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp TTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT---CEEEEEETTSCSCCCTTSCG
T ss_pred chheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc---cEEEEEcHHHHhhccCCCCc
Confidence 99999998 478899999999997 22334444444 68899999998777 58887766654332211100
Q ss_pred ------h--hhccCCCCCHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 153 ------A--LMLLGPTMNPKVAFELSERIP------HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 153 ------~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
. .....+++.....+.+...++ .++...++..++++++.+.|++. ++.+. |.-+ .
T Consensus 234 ~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~-~~~~---~------ 303 (377)
T 3e77_A 234 VLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVC-PVEP---Q------ 303 (377)
T ss_dssp GGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEEC-CSCG---G------
T ss_pred hhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceec-CCCH---H------
Confidence 0 001123444333222222222 35566677889999999999998 44432 2201 0
Q ss_pred HhccCCCcceEEEEEeCCH---HHH-HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 218 MANKEYGFGGLLCLDMETE---EKA-NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~---~~~-~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
...+.+++|.+++. .+. ..+++.+.. .|+.. ..| .. ..+.+|
T Consensus 304 -----~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~---~Gi~~-~~g----------~~---------------~~g~iR 349 (377)
T 3e77_A 304 -----NRSKMNIPFRIGNAKGDDALEKRFLDKALE---LNMLS-LKG----------HR---------------SVGGIR 349 (377)
T ss_dssp -----GBCSSEEEEEESSTTCCHHHHHHHHHHHHH---TTEES-CBC----------CT---------------TTCSEE
T ss_pred -----HcCCcEEEEEcCCCCCchhHHHHHHHHHHH---CCcEE-eCC----------CC---------------cCCEEE
Confidence 01344699999841 222 456666653 34311 111 10 124699
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+|++ ..++.++++.|.++|+++.++
T Consensus 350 iS~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 350 ASLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999988654
No 221
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.78 E-value=3.3e-18 Score=157.08 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=122.1
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhh----------cCcccceeEEEecC-----C-C------
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHF----------FPRACNITTTFVDI-----S-D------ 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~----------~~~~~g~~~~~~~~-----~-d------ 51 (324)
+|+..+++.+.+ .+++|++.+|.|+++....... .+...+......+. + +
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 356666666542 3579999999998766443211 11111222222221 1 1
Q ss_pred --HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC--------ccCCCC
Q 020548 52 --HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS--------PARLGA 114 (324)
Q Consensus 52 --~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~--------~~~~~~ 114 (324)
+++|++.+.+ +++++|++++++|++|...+ +++|+++|++||+++|+||+|+++... ......
T Consensus 205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~p 284 (476)
T 3i5t_A 205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284 (476)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCc
Confidence 7889888842 57899999999999997654 899999999999999999999766321 112246
Q ss_pred cEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh---hhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHH
Q 020548 115 DVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRAL 188 (324)
Q Consensus 115 d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 188 (324)
|+++ ++|.+++ | +|+ |++++++++++.+..... ........+..+..+++++..++.+ +...++..++.+
T Consensus 285 di~t--~sK~l~~-G~~pl-g~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~ 360 (476)
T 3i5t_A 285 DIIT--FAKGVTS-GYVPL-GGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360 (476)
T ss_dssp SEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred chhh--hhhhhcC-CCcCe-EEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7765 7899987 7 897 999999999888865310 0000111222333333322222222 234566677888
Q ss_pred HHHHHHHhCC
Q 020548 189 IFARRMKKLG 198 (324)
Q Consensus 189 ~l~~~L~~~~ 198 (324)
++.+.|+++.
T Consensus 361 ~l~~~L~~l~ 370 (476)
T 3i5t_A 361 YFAAALASLR 370 (476)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 8888888653
No 222
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.76 E-value=9.4e-18 Score=149.14 Aligned_cols=257 Identities=11% Similarity=0.015 Sum_probs=162.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+++++.+++++||+|++...++.+.. +.....+ .| ++..++.+ +++++++++ +++|++|.+++..
T Consensus 102 ~a~n~ai~~l~~~gd~v~~~~~~~~~~~--~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l-~~~t~lV~~~h~e 176 (386)
T 3qm2_A 102 GQFAGVPLNLLGDKTTADYVDAGYWAAS--AIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQL-SDNAAYLHYCPNE 176 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCC-CTTCSCEEECSEE
T ss_pred HHHHHHHHhccCCCCeEEEEeCCHHHHH--HHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhc-CCCCcEEEEECCc
Confidence 4788889998999999887666555543 3333444 67 67666543 456777777 7899999999999
Q ss_pred CCcccc-cChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 74 NPTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~-~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.||.+ .|+++|. +|+++++|.++ +....+..+++ ++++|.+|++|++| .|+++.++++.+.+.+..
T Consensus 177 t~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G---~g~l~v~~~~~~~~~~~~ 246 (386)
T 3qm2_A 177 TIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG---LTLVIVREDLLGKAHESC 246 (386)
T ss_dssp TTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT---EEEEEEEGGGCSCCCTTS
T ss_pred CCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc---cEEEEECHHHHhhhcccC
Confidence 999996 8898885 79999999997 23334444444 67799999998776 588887776643222110
Q ss_pred h---------hhh-hccCCCCCHHH-HHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 151 Q---------GAL-MLLGPTMNPKV-AFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 151 ~---------~~~-~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
. ... +...+...... ...++..+. .++...++..+.++++.+.|++.++...... +.
T Consensus 247 p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~----~~----- 317 (386)
T 3qm2_A 247 PSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVA----QA----- 317 (386)
T ss_dssp CGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBC----GG-----
T ss_pred CcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCC----HH-----
Confidence 0 000 11122222222 222222221 2455666778899999999998865111111 00
Q ss_pred HHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 217 SMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
.....+++|.+++ ..+ ..++..+.. .|+ .+..|.. ..+.+|+|
T Consensus 318 ------~rs~~iv~f~~~~~~~~-~~~~~~L~~---~gI-~~~~g~~-------------------------~~~~iRiS 361 (386)
T 3qm2_A 318 ------NRSRMNVPFQLADNTLD-KVFLEESFA---AGL-HALKGHR-------------------------VVGGMRAS 361 (386)
T ss_dssp ------GBCSSEEEEEESSGGGH-HHHHHHHHH---TTE-ECCBCCT-------------------------TTCSEEEE
T ss_pred ------HcCceEEEEECCCcccc-HHHHHHHHH---CCC-EEeCCCC-------------------------CcCeEEEE
Confidence 0134589999984 233 566666664 343 1111100 01459999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhhc
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
++ ..+++++++.|.++|+++.++
T Consensus 362 ~~-~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 362 IY-NAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHHHHh
Confidence 99 999999999999999988653
No 223
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.76 E-value=2.2e-18 Score=156.22 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=118.4
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhh---------cCcccce------eEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHF---------FPRACNI------TTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~------~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..++... ...+++|++.+|.|++........ .+...|+ .+..++.+|++++++++++ +
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 198 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG 198 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 3566666322 123589999999998643221100 0110111 2445556699999999843 2
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+++... ......|+ .|+||.+++ |+|+
T Consensus 199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di--~t~sK~~~~-G~~~ 275 (427)
T 3fq8_A 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDL--TTLGKIIGG-GLPV 275 (427)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSE--EEECGGGGT-TSSC
T ss_pred CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCCh--hhhhhhhhC-Ccce
Confidence 7899999999999999988 999999999999999999999766211 11223465 468899985 8997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhC
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~ 197 (324)
|++++++++++.+...... ......+..+..++.+...++.+ +...++..++.+++.+.|++.
T Consensus 276 -G~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (427)
T 3fq8_A 276 -GAYGGKREIMQLVAPAGPM-YQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp -EEEEECHHHHTTBTTTSSB-CCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEcHHHHHhhccCCCc-cccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877643210 00111222333332222212111 234455566666666666653
No 224
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.75 E-value=1.2e-17 Score=151.39 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=97.6
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHh---------hhcCcc------cceeEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLT---------HFFPRA------CNITTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~---------~~~~~~------~g~~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++... .++++|++.++.|++...... ...+.. ....+..++..|++++++++++ +
T Consensus 120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 4e77_A 120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQ 199 (429)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCC
Confidence 35666666332 356899999999987664210 000000 1123455666699999999843 4
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++.++++|.+.+ +++|.++|+++|+++|+||+|+++... ......|++ |+||.+++ |+|+
T Consensus 200 ~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~~~-G~~~ 276 (429)
T 4e77_A 200 EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKIIGG-GMPV 276 (429)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGGGT-TSCC
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccccC-CCCe
Confidence 6788888877777788776 999999999999999999999766211 112235654 78999985 8997
Q ss_pred EEEEEcChhHHHHHHH
Q 020548 133 AGAVCGPANLVNSMMD 148 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~ 148 (324)
|++++++++++.+..
T Consensus 277 -G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 277 -GAFGGRREVMNALAP 291 (429)
T ss_dssp -EEEEECHHHHTTBTT
T ss_pred -EEEEECHHHHHHhcc
Confidence 999999998887754
No 225
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.74 E-value=5.2e-17 Score=148.88 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=118.5
Q ss_pred chHHHHHHHccCC-----C----CEEEEcCCCchhHHHHHhhhcCcccceeEEE------ec------C---CCHHHHHH
Q 020548 2 SAISSVLMQLCSS-----G----GHVVAARTLYGGTHALLTHFFPRACNITTTF------VD------I---SDHEMVNS 57 (324)
Q Consensus 2 ~ai~~~~~~~~~~-----g----d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~------~~------~---~d~~~l~~ 57 (324)
+|+..++.+++++ | |+|++..+.|..+...... .|..+.. ++ . .|+++|++
T Consensus 100 ~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 174 (467)
T 2oqx_A 100 GAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQI-----NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHH-----TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhc-----cCcceeeccccccccCCCCCCccCCcCHHHHHH
Confidence 5788888888888 8 9988774333433333321 1222211 11 1 28999999
Q ss_pred hhhc---CCceEEEEecCCCCc-cccc---ChHHHHHHHHhcCCEEEEcCCCCc------------C-CCCccC------
Q 020548 58 AIVQ---GRTKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTFSP------------L-VLSPAR------ 111 (324)
Q Consensus 58 ~l~~---~~~~~v~~~~~~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~~~------------~-~~~~~~------ 111 (324)
++.+ +++++|++++|+||+ |.+. ++++|+++|++||+++|+|+++.. . ......
T Consensus 175 ~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~ 254 (467)
T 2oqx_A 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY 254 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG
T ss_pred HHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh
Confidence 9943 479999999999998 7775 478999999999999999977621 1 111111
Q ss_pred CCCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHHhhhhh----hhccCCCCCHHHHHHHhcCcc-cH-HHHHHHHH
Q 020548 112 LGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGA----LMLLGPTMNPKVAFELSERIP-HL-GLRMKEHC 184 (324)
Q Consensus 112 ~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 184 (324)
...|+++.|+||+++++. ||+++++++ +++.+....... +....+.........+...+. .+ +..+++..
T Consensus 255 ~~~d~~~~s~sK~~g~~~---Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~ 331 (467)
T 2oqx_A 255 KYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331 (467)
T ss_dssp GGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCeEEEecccccCCCC---ceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHH
Confidence 236788999999998762 588887766 444443322210 001112223222211111111 11 23445567
Q ss_pred HHHHHHHHHHHhCCCceeCCC
Q 020548 185 HRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~p~ 205 (324)
++++++.+.|++.+..+. |.
T Consensus 332 ~~~~~l~~~L~~~~~~~~-~~ 351 (467)
T 2oqx_A 332 AQVQYLVDGLEEIGVVCQ-QA 351 (467)
T ss_dssp HHHHHHHHHHHHTTCCEE-EE
T ss_pred HHHHHHHHHHHHCCCeee-cC
Confidence 888999999998866555 54
No 226
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.57 E-value=2.6e-19 Score=162.73 Aligned_cols=214 Identities=15% Similarity=0.131 Sum_probs=135.3
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccce--eEEEecCCCHHHHHHhhhc--CCceEEEEecCCCC
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~--~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 75 (324)
+|+..+++.. ...+++|++.+++|++....... .+...|+ .+..++..|++++++++++ +++++|++++++++
T Consensus 167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~s-g~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~ 245 (465)
T 2yky_A 167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFAS-GHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGA 245 (465)
Confidence 3555555543 23459999999999886543310 0111344 3344455689999999932 68999999987777
Q ss_pred cccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
+|.+.+ +++|+++|+++|+++|+||+|+ +...+. ..+....+.|++|++++ |+|+ ||+++++++++.+.
T Consensus 246 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg~-G~pi-G~v~~~~~i~~~l~ 322 (465)
T 2yky_A 246 GGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIGG-GMSF-GAFGGRRDLMERFD 322 (465)
Confidence 998766 8999999999999999999998 532111 11322334479999988 8997 99999999998887
Q ss_pred Hh--h--hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 148 DL--H--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 148 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+. . ....++.++.+.+.++...+..+.. +...++..++.+++.+.|++...+...+. ...
T Consensus 323 ~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---------------~v~ 386 (465)
T 2yky_A 323 PARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGDRFRANLNRIAVENQAPL---------------QFT 386 (465)
Confidence 61 1 1112234444443333333332222 23455667777777777776532111111 112
Q ss_pred CcceEEEEEeCC
Q 020548 224 GFGGLLCLDMET 235 (324)
Q Consensus 224 ~~g~~~~~~l~~ 235 (324)
+.|.++++.+.+
T Consensus 387 g~G~~~~i~~~~ 398 (465)
T 2yky_A 387 GLGSLGTIHFSR 398 (465)
Confidence 478899998863
No 227
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.69 E-value=5.3e-17 Score=148.86 Aligned_cols=206 Identities=19% Similarity=0.187 Sum_probs=125.9
Q ss_pred CHHHHHHhhhcC------CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCC--
Q 020548 51 DHEMVNSAIVQG------RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG-- 113 (324)
Q Consensus 51 d~~~l~~~l~~~------~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~-- 113 (324)
|+++|++++ ++ ++++|++++++|++|.+.+ +++|+++|+++|+++|+||+|.++.... ...+
T Consensus 241 d~~~l~~~l-~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 241 CLEEVEDLI-VKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHH-HHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 578888888 43 7999999998999998876 9999999999999999999996554321 1123
Q ss_pred --CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHH
Q 020548 114 --ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALI 189 (324)
Q Consensus 114 --~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 189 (324)
.|++ |+||.+ +. ||+++ ++++. .+..... ..++. ..+..++.++..++.+ +...++..+++++
T Consensus 320 ~~~Di~--t~sK~~-l~----GG~~~-~~~~~-~~~~~~~-~~T~~---~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 386 (472)
T 1ohv_A 320 DPADVM--TFSKKM-MT----GGFFH-KEEFR-PNAPYRI-FNTWL---GDPSKNLLLAEVINIIKREDLLSNAAHAGKV 386 (472)
T ss_dssp SCCSEE--EECGGG-SS----EEEEE-CGGGS-CSSSSSS-CCSSS---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCEE--EEcccc-cc----CCccC-chhhc-ccccccc-cCccC---ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5665 688995 32 47777 55542 1111111 11112 2222222222222221 2345666778888
Q ss_pred HHHHHHhCCCceeCCC-CCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 190 FARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
+.+.|++....+ |. +. ...+.|.++++++++......+.+++.. .|++ +.
T Consensus 387 l~~~L~~l~~~~--~~~v~-------------~~~~~g~~~~~~~~~~~~~~~~~~~l~~---~Gv~-----------~~ 437 (472)
T 1ohv_A 387 LLTGLLDLQARY--PQFIS-------------RVRGRGTFCSFDTPDESIRNKLISIARN---KGVM-----------LG 437 (472)
T ss_dssp HHHHHHHHHHHC--TTTCE-------------EEEEETTEEEEECSSHHHHHHHHHHHHH---TTEE-----------CE
T ss_pred HHHHHHHHHhhC--CCcEE-------------eecCCceEEEEEeCChhHHHHHHHHHHH---CCeE-----------Ee
Confidence 888887642111 11 00 0013577899988754456677777753 2321 11
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|. + .+.||++++ ...++++++.+.++|+.+-
T Consensus 438 ~~---------------g--~~~iRi~~~-~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 438 GC---------------G--DKSIRFRPT-LVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp EE---------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred cC---------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 11 1 378999999 8788887777777776653
No 228
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.67 E-value=1.9e-15 Score=133.12 Aligned_cols=253 Identities=9% Similarity=-0.026 Sum_probs=157.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+++++.+++ +||++.+...++.+.. +.....+ .|.++..++.+ ++++ + + ++++++|.+++..|
T Consensus 80 ~a~n~~~~~~~-~~~~~~~i~~~~~~~~--~~~~a~~-~G~~v~~~~~~~~g~~~~~~~~--~-l-~~~t~lv~~~~~e~ 151 (361)
T 3m5u_A 80 LQFAMIPMNLA-LNGVCEYANTGVWTKK--AIKEAQI-LGVNVKTVASSEESNFDHIPRV--E-F-SDNADYAYICSNNT 151 (361)
T ss_dssp HHHHHHHHHHC-CSSCEEEEECSHHHHH--HHHHHHH-TTCCEEEEEECTTTTSCSCCCC--C-C-CTTSSEEEEESEET
T ss_pred HHHHHHHHhcC-CCCeEEEEeCCHHHHH--HHHHHHH-cCCceEEEecccCcCCCcCChh--h-c-CCCCCEEEEeCCCC
Confidence 46788888888 8887633333233332 2222223 57777666532 3344 4 7 78999999999989
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH-hhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~-~~~~ 152 (324)
.||.+.|. +++ +|+++++|.++ .+...|.++ ..|++++|.||++|++| .|+++.++++.+.+.+ ....
T Consensus 152 ~tG~~~~~-----i~~-~~~~~~vD~~q-~~g~~~id~~~~d~~~~s~~K~~gp~G---~g~l~~~~~~~~~~~~~~~p~ 221 (361)
T 3m5u_A 152 IYGTQYQN-----YPK-TKTPLIVDASS-DFFSRKVDFSNIALFYGGVQKNAGISG---LSCIFIRKDMLERSKNKQIPS 221 (361)
T ss_dssp TTTEECSS-----CCC-CSSCEEEECGG-GTTSSCCCCTTEEEEEEETTTTSSCTT---CEEEEEEHHHHHHHHTCCCCG
T ss_pred CcceeCCc-----ccc-cCCEEEEEccc-ccCCCCCCcccCCEEEEechhccCCCc---cEEEEEcHHHHhhhcCCCCCc
Confidence 99998662 344 49999999997 222223333 47999999999998766 5999999888877764 1110
Q ss_pred h--------hhccCCCCCHHHHHH---Hhc---CcccHHHHHHHHHHHHHHHHHHHHhCC-C-ceeCCCCCCCchhHHHH
Q 020548 153 A--------LMLLGPTMNPKVAFE---LSE---RIPHLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 153 ~--------~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~p~~~~~~~~~~~~ 216 (324)
. .....+++.....+. ++. ....++...++..+.++++.+.|++.+ . ....+. .
T Consensus 222 ~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~-----~----- 291 (361)
T 3m5u_A 222 MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADK-----K----- 291 (361)
T ss_dssp GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCG-----G-----
T ss_pred eeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCH-----H-----
Confidence 0 001113333332222 221 111366677778999999999999987 3 332111 0
Q ss_pred HHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 217 SMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
.....+++|.+++ ..+ ..+...+.. .|+ .+..|.. ..+.+|+
T Consensus 292 ------~rs~~ivsf~~~~~~~~~-~~~~~~L~~---~gI-~~~~g~~-------------------------~~g~iRi 335 (361)
T 3m5u_A 292 ------DRSLMNVSFNIAKNKDLE-PLFVKEAEE---AGM-IGLKGHR-------------------------ILGGIRA 335 (361)
T ss_dssp ------GBCSSEEEEEESSCTTHH-HHHHHHHHH---TTE-ECCBCCT-------------------------TTCSEEE
T ss_pred ------HcCCeEEEEECCCchhhh-HHHHHHHHH---CCC-EEecCCC-------------------------ccCeEEE
Confidence 0134589999985 222 456666664 343 2111100 0145999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
|++ ..++.++++.+.++|+++.++
T Consensus 336 S~~-~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 336 SIY-NALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred Ecc-CCCCHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999988653
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.65 E-value=1.6e-15 Score=143.58 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=126.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~-~~~~ 65 (324)
+|+..++.++++|||+|+++.++|.++...+. ..|.++++++.. |++++++++++ ++++
T Consensus 222 ~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-----lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k 296 (715)
T 3n75_A 222 TANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-----MSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNAT 296 (715)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCcc
Confidence 36778888999999999999999999998773 368888887642 79999999943 3344
Q ss_pred ---EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCC-------ccCCC--CcEE---EeCCccccccCC
Q 020548 66 ---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-------PARLG--ADVV---VHSISKFISGGA 129 (324)
Q Consensus 66 ---~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~-------~~~~~--~d~~---~~S~sK~~~~~g 129 (324)
++++++| |++|.+.|+++|+++|++++ +++|++|+ ++.+. +...+ +|++ ++|+||+++++.
T Consensus 297 ~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~glt 373 (715)
T 3n75_A 297 WPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFS 373 (715)
T ss_dssp SCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCT
T ss_pred CceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCC
Confidence 8999999 99999999999999998764 79999994 33221 22222 5765 999999987641
Q ss_pred CeeEEEEEcChhH-HHHHHHhhhhhhhccCCCCCHHHHHHHhcC---cc--cHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 130 DIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSER---IP--HLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 130 ~r~~G~i~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
. +|++..+.++ .+.+..... ....++++....+.+... +. .-.++.++..++.+++++.|++.+
T Consensus 374 q--gs~i~v~~~i~~~~~~~~~~---~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~ 443 (715)
T 3n75_A 374 Q--ASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR 443 (715)
T ss_dssp T--CEEEEEESCCCHHHHHHHHH---HTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--eeEEEeCchhhHHHHHHHHH---hhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 4788665442 233333332 133444554433322212 12 123456777888888888888763
No 230
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.63 E-value=1.1e-14 Score=128.44 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=142.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh--cCc-ccce--eEEEe--cCC----CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF--FPR-ACNI--TTTFV--DIS----DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~--~~~-~~g~--~~~~~--~~~----d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|...++.++++|||+|+..+..++++...-... .+. ..|. +...+ +.. |.+++++.....++|+|++.
T Consensus 131 ~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G 210 (490)
T 3ou5_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp HHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEEC
Confidence 4677888999999999999998887765432100 000 0111 11111 111 88999988767799999987
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---- 140 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---- 140 (324)
...+| ...|+++++++|++.|+++++|.++ +++ ..+|+.. +|+++.|.||+|.||- ||+|..++
T Consensus 211 ~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~ 284 (490)
T 3ou5_A 211 TSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKA 284 (490)
T ss_dssp CSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEE
T ss_pred CccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCCC---ceEEEecccccc
Confidence 75554 6789999999999999999999997 443 4678876 8999999999997665 79997665
Q ss_pred -----------hHHHHHHHhhhhhhhccCCCCCHHHHHH--HhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 141 -----------NLVNSMMDLHQGALMLLGPTMNPKVAFE--LSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 141 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++.+.+..... .+...|+.+...++.+ +.+. ......+.++..+|++.|.+.|.+.|+++..-..
T Consensus 285 ~~~k~~~~~~~~~~kkin~aVF-Pg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgT 363 (490)
T 3ou5_A 285 VDPKTGREIPYTFEDRINFAVF-PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT 363 (490)
T ss_dssp ECC--CCEEECCCHHHHHHHHT-TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ccccccchhHHHHHHHHHhhcC-ccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCC
Confidence 46667766543 2223333333333222 1111 2346678888899999999999999997764331
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
...++.+.+. +...++..++...+
T Consensus 364 ------------------dnHlvLvDl~~~g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 364 ------------------DNHLVLVDLRPKGLDGARAERVLELVSI 391 (490)
T ss_dssp ------------------SSSEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred ------------------CceEEEEeccccCCCHHHHHHHHHHcCc
Confidence 2237778875 34556666666554
No 231
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=129.05 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=124.4
Q ss_pred HHHHHHHccCC----CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcC---CceEEE
Q 020548 4 ISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQG---RTKVLY 68 (324)
Q Consensus 4 i~~~~~~~~~~----gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~---~~~~v~ 68 (324)
+.+++.+.+++ ||+|+++..+|.+....+ .+.|.+++++++. |++++++++++. .+.+|+
T Consensus 147 ~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl-----iL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~ 221 (501)
T 3hl2_A 147 SLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM-----ITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIH 221 (501)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH-----HHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHcCcccCCCCEEEEecchHHHHHHHH-----HHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEE
Confidence 44455555653 499999999999999888 3478888888762 899999999542 233444
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC-C------CccCCC-CcEEEeCCccccccCCCeeEEEE-EcC
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-L------SPARLG-ADVVVHSISKFISGGADIIAGAV-CGP 139 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~------~~~~~~-~d~~~~S~sK~~~~~g~r~~G~i-~~~ 139 (324)
.+++.|-.+.+.|+++|+++|++||++++||+||+... + .....| +|+++.|.||++-.|- . ||.+ ..+
T Consensus 222 ~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpI-G-G~ii~~~d 299 (501)
T 3hl2_A 222 STTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV-G-GAIIAGFN 299 (501)
T ss_dssp EECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCS-S-CEEEEESC
T ss_pred ecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeec-C-ceEEEeCC
Confidence 44555545677899999999999999999999994432 1 122347 9999999999986652 2 2444 456
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+++++.+.....+ ....+++ +..++.+. +.+.+...+++..++++++.+.|++.
T Consensus 300 ~e~l~~~~~~yPG---r~S~Sps-ldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 300 DSFIQEISKMYPG---RASASPS-LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp HHHHHHHHHTSCS---CBCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---CCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788777544321 1111122 22333222 33456777888889999999998885
No 232
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.56 E-value=1.7e-13 Score=122.64 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=117.5
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcC---CceEEEEecCCCCcccccChH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQG---RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~ 83 (324)
++.|+++..+|.+....+ .+.|+.+++++.. |++++++++++. ++.+|+.+...+.+|.+.|++
T Consensus 144 ~~~viv~r~aHkSv~kAl-----~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~ 218 (450)
T 3bc8_A 144 AKYIIWPRIDQKSCFKSM-----VTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLE 218 (450)
T ss_dssp CCEEEEECCCCHHHHHHH-----HHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHH
T ss_pred CCEEEEECCcHHHHHHHH-----HHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHH
Confidence 899999999999999888 3478888777651 899999999542 334444454555567889999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCC-C-C-----ccCC-CCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLV-L-S-----PARL-GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGAL 154 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~-~-~-----~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~~ 154 (324)
+|+++|++||++++||++|+... + . ..+. ++|+++.|.||++..+-.. +++. .+++..+.+.....+
T Consensus 219 ~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~--~~l~~rd~~~~~~~~~~~~g-- 294 (450)
T 3bc8_A 219 ELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG--AIIAGFNEPFIQDISKMYPG-- 294 (450)
T ss_dssp HHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSC--EEEEESCHHHHHHHHHHSCS--
T ss_pred HHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhcc--EEEEecCHHHHHHHHHHhhc--
Confidence 99999999999999999995432 1 1 1222 7999999999998776433 5554 577777766543211
Q ss_pred hccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 155 MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
....+++ +..+..+. +.+.+.+.+++..++++++.+.|++.+
T Consensus 295 -~~s~Sps-L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 295 -RASASPS-LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA 338 (450)
T ss_dssp -CBCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1112222 33333222 223355556666788888888887654
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.49 E-value=1.3e-13 Score=124.54 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=124.5
Q ss_pred CCEEEEcCCCchhHHHHHhh-hcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----hHHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTH-FFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSR 87 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~-~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----~~~i~~ 87 (324)
.++|+....+|++....... ..+.........++.+|++.+++.+++ +++++|+++++++..|.+.+ +++|++
T Consensus 169 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~ 248 (454)
T 4ao9_A 169 RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRE 248 (454)
T ss_dssp CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHH
T ss_pred CCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHH
Confidence 47899999888874322100 001111234455667799999998843 46899999998888998876 899999
Q ss_pred HHHhcCCEEEEcCCCCcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh---hhhccCC
Q 020548 88 LAHDKGVTVVVDNTFSPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG---ALMLLGP 159 (324)
Q Consensus 88 l~~~~~~~~ivD~~~~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~---~~~~~~~ 159 (324)
+|++||+++|+||++++-. ..-.....|+++ ++|.+++ |.++ |.+.+++++++.+.+.... ..++.+
T Consensus 249 lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t--~gK~lgg-G~Pi-ga~~~~~ei~~~~~~~~~~~~h~~T~~g- 323 (454)
T 4ao9_A 249 SATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT--LGKYIGG-GMSF-GAFGGRADVMALFDPRTGPLAHSGTFNN- 323 (454)
T ss_dssp HHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE--EEGGGGT-TSSC-EEEEECHHHHGGGCTTTCSCCCCCTTTT-
T ss_pred HHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE--eccccCC-CCcc-eeeeeHHHHHHHHhhccCCccccCCCCC-
Confidence 9999999999999995321 111233578887 8999987 7887 9999999998877542210 111222
Q ss_pred CCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 160 TMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
++...+++. .+..+.. ++..++..++.++|.+.|++...+...+. ...|.|.++.+++.
T Consensus 324 nPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~~~~~---------------~vrg~G~m~gi~f~ 383 (454)
T 4ao9_A 324 NVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCANEGVAM---------------QFTGIGSLMNAHFV 383 (454)
T ss_dssp CHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHHTBSC---------------EEEEETTEEEEESC
T ss_pred CHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhhCCCCE---------------EEeeeceEEEEEEe
Confidence 222222222 2222322 34455666667777777765421111121 12257888888873
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.44 E-value=8e-13 Score=119.82 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=102.9
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|++++.+...|.+.+ +++|.++|++||+++|+||++.++.. .......|+++ ++|.+++ |.
T Consensus 225 ~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lgg-g~ 301 (456)
T 4atq_A 225 DQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAG-GL 301 (456)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT-TS
T ss_pred CceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhh--hhhcccC-cC
Confidence 57899999999888888854 88999999999999999999977632 12233578888 7899976 78
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCcee---CCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVL---YPG 205 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~---~p~ 205 (324)
++ |.+++++++++.+.+... .. .+++.+ ..++.++..++.++ ...++..+..+++.+.|+++..++. .|.
T Consensus 302 P~-~av~~~~~i~~~~~~~~~-~~-Tf~gnp--la~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~ 376 (456)
T 4atq_A 302 PL-SAITGRADLLDAVHPGGL-GG-TYGGNP--VACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSV 376 (456)
T ss_dssp SC-EEEEEEHHHHTTSCTTSS-CC-SSSSCH--HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----C
T ss_pred Cc-eeeEecHHHHhcccccCC-CC-CCCCCh--HHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 97 888888888877754433 11 223333 33333332333222 2333444445555555554311110 011
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeC-------CHHHHHHHHHHhhc
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKANRLMNYLQN 248 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-------~~~~~~~~~~~l~~ 248 (324)
+ .+..|.|.++.+++. +.+...++.+.+..
T Consensus 377 v-------------~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~ 413 (456)
T 4atq_A 377 V-------------GDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK 413 (456)
T ss_dssp E-------------EEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH
T ss_pred e-------------EEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH
Confidence 0 023367889999984 23345566666553
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.32 E-value=3e-11 Score=109.92 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=104.4
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~ 118 (324)
+++++.+. .+++++|++++++...|.+.+ +++|+++|++||+++|+||++++|... -.....|+++
T Consensus 223 ~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t 302 (473)
T 4e3q_A 223 RELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII 302 (473)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE
T ss_pred HHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH
Confidence 34455442 246899999999888888854 889999999999999999999877421 1233578888
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-----ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++|.+++...++ |.++.++++++.+...... .+...++. +..++.++..++.++ ...++..+..+++.
T Consensus 303 --~~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gn--pla~Aaala~L~~i~~~~l~~~~~~~g~~l~ 377 (473)
T 4e3q_A 303 --SSKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHGFTASGH--PVGCAIALKAIDVVMNEGLAENVRRLAPRFE 377 (473)
T ss_dssp --ECGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCCCTTTTC--HHHHHHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred --hcccccCCCCCc-ccccccHHHHHHhccccccccccccCCCCCCC--cchhhhhhhhhhhhccccHHHHHHHHHHHHH
Confidence 899998855897 9999999999888654211 01122222 333333333333332 23455566667777
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|+++... |.+. +..|.|.++.+++.
T Consensus 378 ~~L~~l~~~---~~v~-------------~vRG~Gl~~gielv 404 (473)
T 4e3q_A 378 ERLKHIAER---PNIG-------------EYRGIGFMWALEAV 404 (473)
T ss_dssp HHHHHHTTS---TTEE-------------EEEEETTEEEEEEC
T ss_pred HHHHHHhcC---CCee-------------EEeecceEEEEEEe
Confidence 777764321 1110 22357889999874
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.18 E-value=7.6e-11 Score=114.30 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHhhh-------cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC
Q 020548 53 EMVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG 113 (324)
Q Consensus 53 ~~l~~~l~-------~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~ 113 (324)
++|++.++ .+++++|++++. ++..|...+ +++|+++|++||+++|+||++.++.... ....
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~ 656 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence 56777763 246889999996 899898864 8999999999999999999997663211 1234
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~ 148 (324)
.|+++ ++|.+++ | .++ |++++++++++.+..
T Consensus 657 PDiit--lsK~L~g-G~~Pl-gav~~~~~i~~~~~~ 688 (831)
T 4a0g_A 657 PDIAC--FAKLLTG-GMVPL-AVTLATDAVFDSFSG 688 (831)
T ss_dssp CSEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTCS
T ss_pred CcEEE--Eeccccc-CccCc-EEEEECHHHHHHHhc
Confidence 67775 9999987 5 797 999999998887754
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=73.79 E-value=5.2 Score=31.27 Aligned_cols=38 Identities=5% Similarity=0.138 Sum_probs=32.6
Q ss_pred cCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
.-.+..|+++-..|+.|......++.++|++||..++.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 34678888887778999999999999999999988763
No 238
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=68.65 E-value=15 Score=31.19 Aligned_cols=69 Identities=7% Similarity=-0.031 Sum_probs=44.7
Q ss_pred ccCCCCEEEEcCCCchh------HHHHHhhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEEEec
Q 020548 11 LCSSGGHVVAARTLYGG------THALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~------~~~~~~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
.+++||+|-+..|..+. ........+.. .|.+++.-+.. -.++|.+++.++.+++|+...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTD-MGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHh-CCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 37899999999887532 12222223333 68888765431 267888888788999999876
Q ss_pred CCCCccccc
Q 020548 72 ISNPTLAVA 80 (324)
Q Consensus 72 ~~nptG~~~ 80 (324)
-..-+-.+.
T Consensus 87 GG~g~~rlL 95 (327)
T 4h1h_A 87 GGFNSNQLL 95 (327)
T ss_dssp CCSCGGGGG
T ss_pred CchhHHHHh
Confidence 555444554
No 239
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=66.03 E-value=30 Score=28.69 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CC---HHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SD---HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d---~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++..+++..+.|.-+.. + +|++...+.. ++ +.++.+.+++.++++|+.++-.++ +-..
T Consensus 189 ~~~~~v~~H~af~Yf~~-------~-yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~ 253 (291)
T 1pq4_A 189 PQRKFIVFHPSWAYFAR-------D-YNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFST-------KSSE 253 (291)
T ss_dssp SCCEEEESSCCCHHHHH-------H-TTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCC-------HHHH
T ss_pred CCCEEEEECCchHHHHH-------H-CCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHH
Confidence 57789998888774432 2 6776655432 24 445555565678999998865554 3344
Q ss_pred HHHHhcCCEEEE
Q 020548 87 RLAHDKGVTVVV 98 (324)
Q Consensus 87 ~l~~~~~~~~iv 98 (324)
.++++.|+.++.
T Consensus 254 ~ia~~~g~~v~~ 265 (291)
T 1pq4_A 254 AIAAEIGAGVEL 265 (291)
T ss_dssp HHHHHHTCEEEE
T ss_pred HHHHHcCCeEEE
Confidence 567888877653
No 240
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.65 E-value=20 Score=26.72 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=48.9
Q ss_pred CEEEEcC---CCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 16 GHVVAAR---TLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 16 d~vl~~~---p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
-+|++.. ..|.--...+..++.. .|.++.+...+ .++++.+++.+.++.+|.++.... .....+.++++.+++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~-~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRD-AGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLMAKLRE 95 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHH-TTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHHHHHHh
Confidence 4565554 3333333344444444 79999887654 788888888678899999886533 345567788888877
Q ss_pred cC
Q 020548 92 KG 93 (324)
Q Consensus 92 ~~ 93 (324)
.+
T Consensus 96 ~g 97 (161)
T 2yxb_A 96 LG 97 (161)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 241
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=65.57 E-value=19 Score=31.19 Aligned_cols=68 Identities=7% Similarity=0.018 Sum_probs=45.1
Q ss_pred cCCCCEEEEcCCCchhHH---HHH---hhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEEEecC
Q 020548 12 CSSGGHVVAARTLYGGTH---ALL---THFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~---~~~---~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+++||+|-+..|..+... ..+ ...+.. .|.+++.-+.. -.++|.+++.++.+++|+...-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR-KGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH-TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 678999999999875421 111 223333 78888765431 3678888887789999998765
Q ss_pred CCCccccc
Q 020548 73 SNPTLAVA 80 (324)
Q Consensus 73 ~nptG~~~ 80 (324)
..-+-.+.
T Consensus 119 Gyga~rlL 126 (371)
T 3tla_A 119 GDNSNSLL 126 (371)
T ss_dssp CSCGGGGG
T ss_pred cccHHHHH
Confidence 55444443
No 242
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=65.23 E-value=28 Score=28.81 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=45.5
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++..+++..+.|.=+.. + +|++...+.. . ++.++.+.+++.++++|+.+.-.++ +.
T Consensus 178 ~~~~~v~~H~af~Yf~~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 242 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLAK-------R-FGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KI 242 (286)
T ss_dssp SCCEEEEEESCCHHHHH-------H-TTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HH
T ss_pred CCCEEEEECCchHHHHH-------H-CCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 57788888887774332 2 6777554322 1 4555555665688999998865444 34
Q ss_pred HHHHHHhcCCEEEE
Q 020548 85 LSRLAHDKGVTVVV 98 (324)
Q Consensus 85 i~~l~~~~~~~~iv 98 (324)
+..++++.|+.+++
T Consensus 243 ~~~la~~~g~~v~~ 256 (286)
T 3gi1_A 243 AHAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHHTTTCEEEE
T ss_pred HHHHHHHhCCeEEE
Confidence 45678888988764
No 243
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=62.24 E-value=23 Score=30.20 Aligned_cols=69 Identities=6% Similarity=-0.071 Sum_probs=45.1
Q ss_pred ccCCCCEEEEcCCCchhHH---HHH---hhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEEEec
Q 020548 11 LCSSGGHVVAARTLYGGTH---ALL---THFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~---~~~---~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
.+++||+|-+..|..+... ..+ ...+.. .|.+++.-+.. -.++|.+++.++.+++|+...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQ-KGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHH-TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3789999999999875421 112 123333 68888764431 267888888778999999876
Q ss_pred CCCCccccc
Q 020548 72 ISNPTLAVA 80 (324)
Q Consensus 72 ~~nptG~~~ 80 (324)
-..-+-.+.
T Consensus 88 GG~g~~rlL 96 (336)
T 3sr3_A 88 GGMNSNSLL 96 (336)
T ss_dssp CCSCGGGGG
T ss_pred ccccHHHHh
Confidence 555444443
No 244
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=61.29 E-value=18 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=36.3
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCE-EEEcCCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVT-VVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~-~ivD~~~ 102 (324)
+++.|.+.+++.++..+++--|-|..|...+ .++.++..++.++. ..+||-+
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERl 95 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5778888886678999999999999888754 34444433333544 5588865
No 245
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=60.31 E-value=36 Score=22.95 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=47.0
Q ss_pred HHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 8 LMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 8 ~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+..+.+.| .+|++.+..-....... . .+......+..+.+.+.+.+ . +..+|+.+.+.. ....+.
T Consensus 21 ~~~l~~~g~~~v~~~~r~~~~~~~~~-----~-~~~~~~~~d~~~~~~~~~~~-~-~~d~vi~~~~~~------~~~~~~ 86 (118)
T 3ic5_A 21 AALLKTSSNYSVTVADHDLAALAVLN-----R-MGVATKQVDAKDEAGLAKAL-G-GFDAVISAAPFF------LTPIIA 86 (118)
T ss_dssp HHHHHHCSSEEEEEEESCHHHHHHHH-----T-TTCEEEECCTTCHHHHHHHT-T-TCSEEEECSCGG------GHHHHH
T ss_pred HHHHHhCCCceEEEEeCCHHHHHHHH-----h-CCCcEEEecCCCHHHHHHHH-c-CCCEEEECCCch------hhHHHH
Confidence 33445567 56766665433222221 2 46677777777888888887 3 567777665422 236778
Q ss_pred HHHHhcCCEEE
Q 020548 87 RLAHDKGVTVV 97 (324)
Q Consensus 87 ~l~~~~~~~~i 97 (324)
+.|.+.|+..+
T Consensus 87 ~~~~~~g~~~~ 97 (118)
T 3ic5_A 87 KAAKAAGAHYF 97 (118)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHhCCCEE
Confidence 88888887654
No 246
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=59.60 E-value=20 Score=30.40 Aligned_cols=69 Identities=7% Similarity=-0.018 Sum_probs=45.5
Q ss_pred ccCCCCEEEEcCCCchhH---HHHH---hhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEEEec
Q 020548 11 LCSSGGHVVAARTLYGGT---HALL---THFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~---~~~~---~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
.+++||+|-+..|..+.. ...+ ...+.. .|.+++.-+.. -.++|.+++.++.+++|+...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTE-LGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 378999999999887643 2222 223333 68888775431 267888888778999999876
Q ss_pred CCCCccccc
Q 020548 72 ISNPTLAVA 80 (324)
Q Consensus 72 ~~nptG~~~ 80 (324)
-..-+-.+.
T Consensus 87 GG~g~~rlL 95 (331)
T 4e5s_A 87 GGYNSNGLL 95 (331)
T ss_dssp CCSCGGGGG
T ss_pred ccccHHHHH
Confidence 555444443
No 247
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=58.20 E-value=41 Score=26.18 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=53.2
Q ss_pred CEEEEcC---CCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 16 GHVVAAR---TLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 16 d~vl~~~---p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
.+|++.. ..|.--...+..++.. .|.++.+...+ .++++.+++...++++|.++.-. +.....++++++..++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~-~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLES-GGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALL--TTTMMNMKSTIDALIA 165 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHH-TTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCS--GGGTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHh
Confidence 3555554 2333333334344444 79999887654 67888888766788999988743 3345567888888877
Q ss_pred cC----CEEEEcCC
Q 020548 92 KG----VTVVVDNT 101 (324)
Q Consensus 92 ~~----~~~ivD~~ 101 (324)
.+ +.+++=..
T Consensus 166 ~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 166 AGLRDRVKVIVGGA 179 (210)
T ss_dssp TTCGGGCEEEEEST
T ss_pred cCCCCCCeEEEECC
Confidence 54 67776554
No 248
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=57.71 E-value=24 Score=29.99 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=51.0
Q ss_pred CCCchhHHHHHhhhcCcccceeEEEecCCC-HHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 22 RTLYGGTHALLTHFFPRACNITTTFVDISD-HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 22 ~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d-~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
-|.|.+..+.... .+. ...-+.+++... .+.+.+++....++.+++-+..-|. .+.+++.++|+++|+.++==+
T Consensus 64 vpvy~sv~ea~~~-~p~-~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e---~~~~~l~~~a~~~g~rliGPN 138 (334)
T 3mwd_B 64 IPVFKNMADAMRK-HPE-VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPE---ALTRKLIKKADQKGVTIIGPA 138 (334)
T ss_dssp EEEESSHHHHHHH-CTT-CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCH---HHHHHHHHHHHHHTCEEECSS
T ss_pred ceeeCCHHHHhhc-CCC-CcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHHHHHHHcCCEEEccC
Confidence 4788888876632 111 356677777765 4777788833778887775432222 466799999999999887655
Q ss_pred CC
Q 020548 101 TF 102 (324)
Q Consensus 101 ~~ 102 (324)
+.
T Consensus 139 c~ 140 (334)
T 3mwd_B 139 TV 140 (334)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 249
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=57.45 E-value=20 Score=28.05 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCceEEEEecC-CCCcccccChHHHHHHHHhcCCEEEE
Q 020548 62 GRTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 62 ~~~~~v~~~~~-~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.+..|+++-. .|..|......++.++|++||..++.
T Consensus 157 l~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 157 LQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp SCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 45677877762 67889999999999999999998873
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=55.87 E-value=83 Score=26.65 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHH-HHh------hhcCCceEEEEecCCCCc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV-NSA------IVQGRTKVLYFESISNPT 76 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l-~~~------l~~~~~~~v~~~~~~npt 76 (324)
+|..++..+.+.......++.+.-. --++.....++.+++ .+. ++..++++|++.+.+...
T Consensus 57 ~g~~vlyId~E~s~~~~ra~~lGvd--~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 57 PDAVCLFYDSEFGITPAYLRSMGVD--PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCEEEEEESSCCCCHHHHHHTTCC--GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CCceEEEEeccchhhHHHHHHhCCC--HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 3667777666554333334322111 012333334455554 322 334578888888866553
No 251
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=55.58 E-value=26 Score=25.84 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=38.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHH-HHHHhcCC-EEEEcCCCCc
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELS-RLAHDKGV-TVVVDNTFSP 104 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~-~l~~~~~~-~~ivD~~~~~ 104 (324)
+.+.|.+.+++.++..+++.-|-|..|...+ .+.++ .++++.++ +..+||.|+.
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts 102 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTT 102 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCH
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCH
Confidence 6889999996778999999999888887753 23444 34444565 4668998743
No 252
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=55.40 E-value=5.9 Score=35.48 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=50.7
Q ss_pred CCCCEEEEcCCCc--hhHHHHHhhhcCcccceeEEEecCCC--HH---HHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 13 SSGGHVVAARTLY--GGTHALLTHFFPRACNITTTFVDISD--HE---MVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 13 ~~gd~vl~~~p~y--~~~~~~~~~~~~~~~g~~~~~~~~~d--~~---~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
.+|..||+.--++ .....-+..++.. .|+.-+++++.. +. .-......-.+.= + .+.+..|+..+++++
T Consensus 7 ~~g~~~i~~~f~W~w~~ia~e~~~yl~~-~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~d-y--~i~~~~Gt~~df~~l 82 (496)
T 4gqr_A 7 QQGRTSIVHLFEWRWVDIALECERYLAP-KGFGGVQVSPPNENVAIYNPFRPWWERYQPVS-Y--KLCTRSGNEDEFRNM 82 (496)
T ss_dssp CTTCCEEEEETTCCHHHHHHHHHHTTTT-TTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-S--CSCBTTBCHHHHHHH
T ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHH-hCCCEEEeCccccCccCCCCCCCcccccCccC-c--eeCCCCCCHHHHHHH
Confidence 4666676666444 3332223344555 788888876541 00 0000000011111 1 245667888899999
Q ss_pred HHHHHhcCCEEEEcCCC
Q 020548 86 SRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~ 102 (324)
++-||++|+-||+|-|+
T Consensus 83 v~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 83 VTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp HHHHHHTTCEEEEEECC
T ss_pred HHHHHHCCCEEEEEEcc
Confidence 99999999999999997
No 253
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=55.08 E-value=40 Score=28.26 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CC---HHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SD---HEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d---~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++..+++..+.|.=+.. + +|++...+.. .+ +.++.+.+++.++++|+.+.-.++ +-
T Consensus 189 ~~~~~v~~H~af~Yfa~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~ 253 (312)
T 2o1e_A 189 EKKEFITQHTAFGYLAK-------E-YGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASS-------KV 253 (312)
T ss_dssp SCCEEEESSCTTHHHHH-------H-TTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCH-------HH
T ss_pred CCCEEEEECCchHHHHH-------H-CCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 56788888887763332 2 6777655432 13 455555565578898887754443 45
Q ss_pred HHHHHHhcCCEEE
Q 020548 85 LSRLAHDKGVTVV 97 (324)
Q Consensus 85 i~~l~~~~~~~~i 97 (324)
+..++++.|+.++
T Consensus 254 ~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 254 ADTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHHTCCEEE
T ss_pred HHHHHHHhCCcEE
Confidence 5566888888764
No 254
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=53.84 E-value=25 Score=27.71 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=29.7
Q ss_pred CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 62 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.+..|+++-. |..|......++.++|++||..++.
T Consensus 166 l~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 45677777755 7789999999999999999988773
No 255
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=51.60 E-value=22 Score=28.30 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=30.4
Q ss_pred cCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
.-.+..|+++-. |..|......++.++|++||..++.
T Consensus 176 Gl~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345677777755 7789999999999999999988774
No 256
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=51.28 E-value=55 Score=27.54 Aligned_cols=68 Identities=9% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
+..+++..+.|.-+.. + +|++...+.. . ++.++.+.+++.++++|+.+.-.++ +-+
T Consensus 204 ~r~~v~~H~af~Yfa~-------~-yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~ 268 (321)
T 1xvl_A 204 QRFLVSCEGAFSYLAR-------D-YGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQ 268 (321)
T ss_dssp GCEEEEEESTTHHHHH-------H-TTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHH
T ss_pred CCEEEEECchHHHHHH-------H-CCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCCh-------HHH
Confidence 5678888787763332 2 6777654421 1 4555555565678999998865554 444
Q ss_pred HHHHHhcCCEEE
Q 020548 86 SRLAHDKGVTVV 97 (324)
Q Consensus 86 ~~l~~~~~~~~i 97 (324)
..++++.|+.++
T Consensus 269 ~~iA~e~g~~v~ 280 (321)
T 1xvl_A 269 KQVAQATGARFG 280 (321)
T ss_dssp HHHHTTTCCEEE
T ss_pred HHHHHhcCCcee
Confidence 566888888875
No 257
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=49.46 E-value=32 Score=28.36 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++..+++..+.|.-+.. + +|++...+.. . ++.++.+.+++.++++|+.+.-.++ +.
T Consensus 176 ~~~~~v~~H~af~Yf~~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 240 (284)
T 3cx3_A 176 TQKTFVTQHTAFSYLAK-------R-FGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASS-------KV 240 (284)
T ss_dssp SCCCEEEEESCCHHHHH-------H-TTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCC-------HH
T ss_pred CCCEEEEECCchHHHHH-------H-cCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HH
Confidence 56778888888764332 2 6666544321 1 4556666665678898888764443 44
Q ss_pred HHHHHHhcCCEEE
Q 020548 85 LSRLAHDKGVTVV 97 (324)
Q Consensus 85 i~~l~~~~~~~~i 97 (324)
+..++++.|+.++
T Consensus 241 ~~~ia~~~g~~v~ 253 (284)
T 3cx3_A 241 AETLVKSTGVGLK 253 (284)
T ss_dssp HHHHHSSSSCCEE
T ss_pred HHHHHHHcCCeEE
Confidence 5556777787654
No 258
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=49.26 E-value=37 Score=24.50 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=40.6
Q ss_pred cceeEEEecC---CCHHHHHHhhhcCCceEEEEec-CCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 40 CNITTTFVDI---SDHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 40 ~g~~~~~~~~---~d~~~l~~~l~~~~~~~v~~~~-~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.|+++..+.. .--.++...++++++.+|+... |.++.....|...|++.|-.|+++++..
T Consensus 48 ~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 111 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATN 111 (134)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECS
T ss_pred hCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcC
Confidence 4666666532 1123577777678888888764 3343333568899999999999998753
No 259
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=48.14 E-value=38 Score=28.42 Aligned_cols=69 Identities=7% Similarity=-0.075 Sum_probs=42.8
Q ss_pred ccCCCCEEEEcCCCchhHHHHH---hhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 11 LCSSGGHVVAARTLYGGTHALL---THFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~---~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
.+++||+|-+..|..+.....+ ...+.. .|.+++.-+.. -.++|.+++.++.+++|+...-..
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGy 91 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEV-HGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGY 91 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHH-TTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSS
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHh-CCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCc
Confidence 3679999999998765322222 123333 68887654321 256777778778888888876544
Q ss_pred Cccccc
Q 020548 75 PTLAVA 80 (324)
Q Consensus 75 ptG~~~ 80 (324)
-+-.+.
T Consensus 92 ga~rlL 97 (311)
T 1zl0_A 92 GCGQLL 97 (311)
T ss_dssp CGGGGT
T ss_pred CHHHHh
Confidence 444443
No 260
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=47.61 E-value=16 Score=32.91 Aligned_cols=128 Identities=18% Similarity=0.234 Sum_probs=60.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+.+...+..+...++ =--.-|.|..+.+... .-+. ....++.++.. -++.++++. +..+++|+++ -+-+ .
T Consensus 1 ~~~~~~~l~~~~~~~~-~~~~~Pv~~~~~~~~~-~p~~-~DlavI~vPa~~v~~~v~e~~-~~Gv~~viis-~Gf~---~ 72 (480)
T 3dmy_A 1 MQQLEEALKQLAQGSG-SSQALTQVRRWDSACQ-KLPD-ANLALISVAGEYAAELANQAL-DRNLNVMMFS-DNVT---L 72 (480)
T ss_dssp --------------------CCEEESSHHHHHH-HSTT-CCEEEECSCHHHHHHHHHHHH-HTTCEEEECC-CCCC---H
T ss_pred ChHHHHHHHHHhhccC-CCCCCcccchHHHHHh-cCCC-CCEEEEecCHHHHHHHHHHHH-hcCCCEEEEC-CCCC---H
Confidence 4556666666543321 1113466666666553 1112 45666666544 456677777 6678854433 2222 3
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.+++.++|+++|+.++==++ +.+.. .+ +-.||+..+ +.+++ |++.-+-.+...+.
T Consensus 73 ~~~~~l~~~A~~~g~rliGPNc-G~~~~----~~---~~~~f~~~~--~~G~v-aivSqSGal~~~i~ 129 (480)
T 3dmy_A 73 EDEIQLKTRAREKGLLVMGPDC-GTSMI----AG---TPLAFANVM--PEGNI-GVIGASGTGIQELC 129 (480)
T ss_dssp HHHHHHHHHHHHTTCCEECSSC-CEEEE----TT---EEEESCCCC--CEEEE-EEEESCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEecCc-ccccc----CC---ccccccCCC--CCCCE-EEEeccHHHHHHHH
Confidence 4557899999999988875554 22211 11 122344433 24455 88876665544443
No 261
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=46.57 E-value=79 Score=29.55 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=51.7
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
+++||+|.+..|.-..+...+-... + .|.....++.. ..+.+...+++-++++++........|...++.++.+-
T Consensus 136 v~~Gd~V~i~~~~~~e~v~a~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 211 (663)
T 1ry2_A 136 VRKGDTVAVYMPMVPEAIITLLAIS-R-IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDD 211 (663)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHH-H-TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHH-H-cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHH
Confidence 5789999998876665554442222 3 68777777654 67888888866688899887766566777776655543
No 262
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=46.32 E-value=35 Score=22.06 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=33.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
-..+..+++++.+.++|++.+--.| .-...+..+|++++++++.-..
T Consensus 15 G~~~v~kai~~gkaklViiA~D~~~----~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 15 GTKQTVKALKRGSVKEVVVAKDADP----ILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp SHHHHHHHHTTTCEEEEEEETTSCH----HHHHHHHHHHHHHTCCEEEESC
T ss_pred cHHHHHHHHHcCCeeEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEECC
Confidence 3567777886778899998764333 2346788899999998876543
No 263
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=45.49 E-value=9.3 Score=34.00 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=25.7
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
....|...+++++++.||++|+-||+|-|+
T Consensus 58 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 87 (448)
T 1g94_A 58 QSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 344566678999999999999999999987
No 264
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=44.93 E-value=32 Score=28.39 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=40.8
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEe---cC---C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFV---DI---S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~---~~---~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++..+++..+.|.-+... +|++...+ .. . ++.++.+.+++.++++|+.+.-.++ +-
T Consensus 173 ~~~~~v~~H~af~Yf~~~--------yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 237 (284)
T 2prs_A 173 KGKGYFVFHDAYGYFEKQ--------FGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRP-------AV 237 (284)
T ss_dssp TTCCEEEEESCCHHHHHH--------HTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCS-------HH
T ss_pred CCCeEEEECccHHHHHHH--------CCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 567788888877644332 44443221 11 2 3445555555678888888764443 44
Q ss_pred HHHHHHhcCCEEEE
Q 020548 85 LSRLAHDKGVTVVV 98 (324)
Q Consensus 85 i~~l~~~~~~~~iv 98 (324)
+..++++.|+.++.
T Consensus 238 ~~~ia~~~g~~v~~ 251 (284)
T 2prs_A 238 VESVARGTSVRMGT 251 (284)
T ss_dssp HHHHTTTSCCEEEE
T ss_pred HHHHHHHcCCeEEE
Confidence 45567777877653
No 265
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=43.66 E-value=42 Score=27.85 Aligned_cols=67 Identities=9% Similarity=0.176 Sum_probs=43.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
..+++..+.|.=+.. + +|++...+.. . ++.++.+.+++.++++|+.+.-.++ +.+.
T Consensus 184 ~~~v~~H~af~Yf~~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~ 248 (294)
T 3hh8_A 184 KLIVTSEGCFKYFSK-------A-YGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDR-------RPME 248 (294)
T ss_dssp CCEEEEESCCHHHHH-------H-HTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTSCS-------HHHH
T ss_pred cEEEEECChHHHHHH-------H-cCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHHH
Confidence 668888887764333 2 5666544421 1 4555555665688999999875444 4556
Q ss_pred HHHHhcCCEEE
Q 020548 87 RLAHDKGVTVV 97 (324)
Q Consensus 87 ~l~~~~~~~~i 97 (324)
.++++.|+.++
T Consensus 249 ~ia~~~g~~v~ 259 (294)
T 3hh8_A 249 TVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHCCCEE
T ss_pred HHHHHhCCcEE
Confidence 77888888776
No 266
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=43.36 E-value=61 Score=28.66 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=56.7
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccc-eeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACN-ITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g-~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
++++=.-+.+.+|....-...|..+..+ .+ +++.--+. .+++.+.+.+......++.+-. |-.|.+.+..++++
T Consensus 291 lle~ypI~~IEDPl~~dD~eg~a~Lt~~-lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKv--nqiGGITEalkaa~ 367 (441)
T 3qtp_A 291 YGKHYPIASIEDPFAEDDWAAWNKFTVE-HGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKV--NQIGTLTETFKTIK 367 (441)
T ss_dssp HHHHSCEEEEESCSCTTCHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECG--GGTCCHHHHHHHHH
T ss_pred HhhhcceeeecCCCChHHHHHHHHHHHh-cCCceEEeccccccCHHHHHHHHHcCCCCEEEecc--cccccHHHHHHHHH
Confidence 3444457778888776655555544444 45 44433222 3688888888555566666543 55788888899999
Q ss_pred HHHhcCCEEEEc
Q 020548 88 LAHDKGVTVVVD 99 (324)
Q Consensus 88 l~~~~~~~~ivD 99 (324)
+|+++|..+++=
T Consensus 368 lA~~~G~~vmvs 379 (441)
T 3qtp_A 368 MAQEKGWGVMAS 379 (441)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEe
Confidence 999999887664
No 267
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=42.77 E-value=54 Score=24.64 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=52.3
Q ss_pred HHHHHccCCCCEEEEcCCCchhHHHH-HhhhcCcccceeEEEecCCCHHHH---HHhhhcCCceEEEEecCCCCcccccC
Q 020548 6 SVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDISDHEMV---NSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 6 ~~~~~~~~~gd~vl~~~p~y~~~~~~-~~~~~~~~~g~~~~~~~~~d~~~l---~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
.+...+.+ .++|.+..-........ +...+.+ .|..+..++.+. ..+ ...+ +++ .++++-+ .+|...+
T Consensus 31 ~~~~~i~~-a~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~-~~~~~~~~~~-~~~-d~~i~iS---~sG~t~~ 102 (187)
T 3sho_A 31 AAVEAICR-ADHVIVVGMGFSAAVAVFLGHGLNS-LGIRTTVLTEGG-STLTITLANL-RPT-DLMIGVS---VWRYLRD 102 (187)
T ss_dssp HHHHHHHH-CSEEEEECCGGGHHHHHHHHHHHHH-TTCCEEEECCCT-HHHHHHHHTC-CTT-EEEEEEC---CSSCCHH
T ss_pred HHHHHHHh-CCEEEEEecCchHHHHHHHHHHHHh-cCCCEEEecCCc-hhHHHHHhcC-CCC-CEEEEEe---CCCCCHH
Confidence 33333333 45787777655433221 1222223 677777765322 222 2223 344 3444332 3577778
Q ss_pred hHHHHHHHHhcCCEE--EEcCCCCcCCCCccCCCCcEEEe
Q 020548 82 IPELSRLAHDKGVTV--VVDNTFSPLVLSPARLGADVVVH 119 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~--ivD~~~~~~~~~~~~~~~d~~~~ 119 (324)
+-++++.++++|+.+ |.|.. .+++...+|+++.
T Consensus 103 ~~~~~~~ak~~g~~vi~IT~~~-----~s~l~~~ad~~l~ 137 (187)
T 3sho_A 103 TVAALAGAAERGVPTMALTDSS-----VSPPARIADHVLV 137 (187)
T ss_dssp HHHHHHHHHHTTCCEEEEESCT-----TSHHHHHCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCC-----CCcchhhCcEEEE
Confidence 888999999988654 45543 2333333566554
No 268
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=42.07 E-value=74 Score=24.91 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=52.3
Q ss_pred CEEEEcCC--C-chhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEE--ecCCCCcccccChHHHHHHH
Q 020548 16 GHVVAART--L-YGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYF--ESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p--~-y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~--~~~~nptG~~~~~~~i~~l~ 89 (324)
.+|++..+ + |.--...+..++.. .|.++++.-.+ .++++.++..+.++++|.+ +.. .+.....++++.+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l--~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGA-NGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSAL--MTTSMLGQKDLMDRL 169 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHH-TSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECS--SHHHHTHHHHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHH-CCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhc--ccCcHHHHHHHHHHH
Confidence 46666553 3 33333333334434 79999887554 6888877776788999999 653 334455678888888
Q ss_pred HhcC----CEEEEcC
Q 020548 90 HDKG----VTVVVDN 100 (324)
Q Consensus 90 ~~~~----~~~ivD~ 100 (324)
++.+ +.+++=.
T Consensus 170 ~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHTTCGGGSEEEEES
T ss_pred HHcCCCCCCEEEEEC
Confidence 8765 4555544
No 269
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=42.00 E-value=1.4e+02 Score=24.27 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=49.6
Q ss_pred HHHHccCCCCEEEEcC-CCc---hhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecC-CCCcccccC
Q 020548 7 VLMQLCSSGGHVVAAR-TLY---GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI-SNPTLAVAN 81 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~-p~y---~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~-~nptG~~~~ 81 (324)
++..+++.|.+|.+.. ..- +.....+..+. . .++++...|..|.+.+.+++ + ++..|+.... ..+......
T Consensus 20 l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~-~~~~~~~~D~~d~~~l~~~~-~-~~d~vi~~a~~~~~~~~~~~ 95 (313)
T 1qyd_A 20 IVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-Q-LGAKLIEASLDDHQRLVDAL-K-QVDVVISALAGGVLSHHILE 95 (313)
T ss_dssp HHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-T-TTCEEECCCSSCHHHHHHHH-T-TCSEEEECCCCSSSSTTTTT
T ss_pred HHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH-h-CCeEEEeCCCCCHHHHHHHH-h-CCCEEEECCccccchhhHHH
Confidence 3445666676665543 221 11212221111 1 46777788888999999998 4 4666665443 222223344
Q ss_pred hHHHHHHHHhcC-CEEEE
Q 020548 82 IPELSRLAHDKG-VTVVV 98 (324)
Q Consensus 82 ~~~i~~l~~~~~-~~~iv 98 (324)
...+.+.|++.| +--++
T Consensus 96 ~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 96 QLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp HHHHHHHHHHSCCCSEEE
T ss_pred HHHHHHHHHhcCCCceEE
Confidence 678889999887 54333
No 270
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=41.36 E-value=12 Score=35.59 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.2
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
..+++++++.||++|+-||+|-++-+
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH 279 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNH 279 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTB
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 45688899999999999999999843
No 271
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=41.36 E-value=1.4e+02 Score=24.22 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=52.5
Q ss_pred cCccc-ceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcc-cccChHHHHHHHHhcC----CEEEEcCCCCcCCCC
Q 020548 36 FPRAC-NITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTL-AVANIPELSRLAHDKG----VTVVVDNTFSPLVLS 108 (324)
Q Consensus 36 ~~~~~-g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG-~~~~~~~i~~l~~~~~----~~~ivD~~~~~~~~~ 108 (324)
+.. . |.++++.-.+ .++++.++..+.++.+|.++....+.- ....+.++++.+++.| +.+++=.+. +...
T Consensus 152 L~~-~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~--~~~~ 228 (262)
T 1xrs_B 152 LER-YEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPR--INNE 228 (262)
T ss_dssp GGG-CTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTT--CCHH
T ss_pred HHh-cCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCc--CCHH
Confidence 444 7 9999876554 688888877678999999987544311 3456778888887765 677766542 1100
Q ss_pred -ccCCCCcEEEeCCc
Q 020548 109 -PARLGADVVVHSIS 122 (324)
Q Consensus 109 -~~~~~~d~~~~S~s 122 (324)
..+.|+|.+....+
T Consensus 229 ~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 229 IAKELGYDAGFGPGR 243 (262)
T ss_dssp HHHTTTCSEEECTTC
T ss_pred HHHHcCCeEEECCch
Confidence 12336666664443
No 272
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=41.08 E-value=34 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCCceEEEEecCCCC---------ccccc-ChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNP---------TLAVA-NIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~np---------tG~~~-~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.+.+++++ +..+++|.+-..+.+ ..... -.+++.++|+++++.+|+++-
T Consensus 46 ~~~~~~al-~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~ 104 (243)
T 3o63_A 46 AQFAEAAL-AGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR 104 (243)
T ss_dssp HHHHHHHH-HTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHH-HCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH
Confidence 56777778 778889888665432 22222 246889999999999999664
No 273
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=41.08 E-value=17 Score=23.82 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCCEEEEcCC
Q 020548 82 IPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~ 101 (324)
-.+|.++|+++|+.++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46999999999999999964
No 274
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=40.87 E-value=9.7 Score=36.30 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.1
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
...+++++++.||++|+-||.|-++-+
T Consensus 314 ~~~dfk~LV~~aH~~GI~VIlDvV~NH 340 (718)
T 2e8y_A 314 RKTELKQMINTLHQHGLRVILDVVFNH 340 (718)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred cHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 356788999999999999999999833
No 275
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=40.85 E-value=15 Score=32.93 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.6
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
..|...+++++++.||++|+-||+|-|+
T Consensus 74 ~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 101 (483)
T 3bh4_A 74 KYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (483)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4466678999999999999999999997
No 276
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=40.23 E-value=63 Score=24.57 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=40.7
Q ss_pred cceeEEEecCC---CHHHHHHhhhcCCceEEEEec-CCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 40 CNITTTFVDIS---DHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 40 ~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~-~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.|+++..+..- --.++...++++++.+|+... |.++.....|...|++.|-.++++++.-
T Consensus 72 ~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~Tn 135 (178)
T 1vmd_A 72 LGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAIT 135 (178)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESS
T ss_pred hCceeEEEeecCCCCCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeC
Confidence 46666665321 123577777678898888764 3343333568999999999999998744
No 277
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=39.91 E-value=1.1e+02 Score=25.57 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=41.4
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
+..+++..+.|.-+.. + +|++...+.. . ++.++.+.+++.++++|+.+.-.++- ..+.|
T Consensus 197 ~~~~v~~H~af~Yfa~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~----~~~~l 264 (313)
T 1toa_A 197 RRVLVTAHDAFGYFSR-------A-YGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHK----NVEAL 264 (313)
T ss_dssp GCEEEEEESCCHHHHH-------H-HTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTH----HHHHH
T ss_pred CCEEEEECCcHHHHHH-------H-CCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH----HHHHH
Confidence 6778888888764432 2 5666544322 1 34555555656789999988654431 12334
Q ss_pred HHH--HHhcCCEE
Q 020548 86 SRL--AHDKGVTV 96 (324)
Q Consensus 86 ~~l--~~~~~~~~ 96 (324)
++. |++.|+.+
T Consensus 265 a~~~~A~e~gv~v 277 (313)
T 1toa_A 265 RDAVQARGHVVQI 277 (313)
T ss_dssp HHHHHTTTCCCEE
T ss_pred HccchhhhcCCce
Confidence 422 27888775
No 278
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=39.72 E-value=16 Score=32.73 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=24.6
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
..|...+++++++.||++|+-||+|-|+
T Consensus 76 ~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 103 (480)
T 1ud2_A 76 KYGTKAQLERAIGSLKSNDINVYGDVVM 103 (480)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3566678999999999999999999997
No 279
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=39.62 E-value=16 Score=32.77 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=24.6
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
..|...+++++++.||++|+-||+|-|+
T Consensus 78 ~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 105 (485)
T 1wpc_A 78 KYGTRSQLQAAVTSLKNNGIQVYGDVVM 105 (485)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3566678999999999999999999997
No 280
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=39.54 E-value=17 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.0
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
..|...+++++++.||++|+-||+|-++-
T Consensus 82 ~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 110 (435)
T 1mxg_A 82 RFGSKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 35666789999999999999999999873
No 281
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=39.34 E-value=16 Score=33.08 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=24.7
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
..|...+++++++.||++|+-||+|-|+
T Consensus 77 ~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 104 (515)
T 1hvx_A 77 KYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (515)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3566678999999999999999999997
No 282
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=39.22 E-value=45 Score=23.49 Aligned_cols=54 Identities=13% Similarity=0.370 Sum_probs=33.7
Q ss_pred cceeEEEecCCCHHHHHHhhhc-----C---CceEEEE--ecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 40 CNITTTFVDISDHEMVNSAIVQ-----G---RTKVLYF--ESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~-----~---~~~~v~~--~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
++..+...+..|++.+.+.+.+ + +-.-|++ .... ...++.+|.++++++|+.+|
T Consensus 15 ~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 15 FTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 5565666666688887777621 0 1123333 3222 23689999999999998775
No 283
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=38.82 E-value=17 Score=33.10 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=26.0
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
...|...+++++++.||++|+-||+|-++-
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 445777789999999999999999999973
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=38.48 E-value=78 Score=28.05 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=49.8
Q ss_pred HccCCCCEEEEc--CCCchhHHHHHhhhcCcccceeEEEecC-CCHHHHH-Hhh---hcCCceEEEEecCCCCcc---cc
Q 020548 10 QLCSSGGHVVAA--RTLYGGTHALLTHFFPRACNITTTFVDI-SDHEMVN-SAI---VQGRTKVLYFESISNPTL---AV 79 (324)
Q Consensus 10 ~~~~~gd~vl~~--~p~y~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~-~~l---~~~~~~~v~~~~~~nptG---~~ 79 (324)
.+.+.|.+|++. ++..++....++.+... .|+++...+. .|+.++. +++ ...+..+|++.++....- ..
T Consensus 123 ~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~-~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm 201 (443)
T 3dm5_A 123 YFQKRGYKVGVVCSDTWRPGAYHQLRQLLDR-YHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALI 201 (443)
T ss_dssp HHHTTTCCEEEEECCCSSTHHHHHHHHHHGG-GTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHH
T ss_pred HHHHCCCeEEEEeCCCcchhHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHH
Confidence 345567665443 35556666666555554 6776654332 2544332 222 145688999987632211 11
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
..+..+.+..+...+++++|...
T Consensus 202 ~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 202 EEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHhhcCceEEEEEeCCC
Confidence 23444444555566899999764
No 285
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=38.21 E-value=58 Score=28.82 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=58.7
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
++.+=+-+.+.+|..+.-...+..+..+ ..+++.--+. .++.++.+.+...-..+|.+.. |..|.+.+..+++++
T Consensus 285 ~l~~y~i~~iEdPl~~dD~~g~~~l~~~-~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv--~qiGGitea~~ia~l 361 (436)
T 2al1_A 285 LMKRYPIVSIEDPFAEDDWEAWSHFFKT-AGIQIVADDLTVTNPKRIATAIEKKAADALLLKV--NQIGTLSESIKAAQD 361 (436)
T ss_dssp HHHHSCEEEEECCSCTTCHHHHHHHHTT-CCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH--HHHCCHHHHHHHHHH
T ss_pred HHHhCCcEEEECCCCCcCHHHHHHHHhc-CCCeEEECCcccCCHHHHHHHHHhCCCCEEEech--hhcCCHHHHHHHHHH
Confidence 3444567888888877666666555444 4555543332 2688998888445556666543 557888888999999
Q ss_pred HHhcCCEEEEc
Q 020548 89 AHDKGVTVVVD 99 (324)
Q Consensus 89 ~~~~~~~~ivD 99 (324)
|+++|+.+++=
T Consensus 362 A~~~g~~~~~s 372 (436)
T 2al1_A 362 SFAAGWGVMVS 372 (436)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEEEe
Confidence 99999876653
No 286
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=38.11 E-value=17 Score=32.67 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.5
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
.|...+++++++.||++|+-||+|-++
T Consensus 78 ~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 104 (488)
T 1wza_A 78 YGTLEDFHKLVEAAHQRGIKVIIDLPI 104 (488)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 355567899999999999999999997
No 287
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=37.90 E-value=14 Score=33.59 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.9
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||.|-|+
T Consensus 77 Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 102 (549)
T 4aie_A 77 GTMADMDELISKAKEHHIKIVMDLVV 102 (549)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44457899999999999999999997
No 288
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=37.58 E-value=54 Score=24.24 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=40.1
Q ss_pred cceeEEEecCC---CHHHHHHhhhcCCceEEEEec-CCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 40 CNITTTFVDIS---DHEMVNSAIVQGRTKVLYFES-ISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 40 ~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~-~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.|+++..+..- --.++...++++++.+|+... |.++.....|...|++.|-.|+++++.-
T Consensus 56 ~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 119 (152)
T 1b93_A 56 TGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATN 119 (152)
T ss_dssp HCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESS
T ss_pred hCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeC
Confidence 46666655321 123577777678898888764 3343322467889999999999998754
No 289
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=37.38 E-value=52 Score=23.61 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=42.2
Q ss_pred HHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC---CEEEEc
Q 020548 30 ALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG---VTVVVD 99 (324)
Q Consensus 30 ~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~---~~~ivD 99 (324)
..+..++.. .|.++.+.-.+ .++++.++..+.++.+|.++....+ ....++++.+..++.+ +.+++=
T Consensus 21 ~~v~~~l~~-~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 21 KILDHAFTN-AGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHHH-TTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 333344444 79998876443 6888888876678899998875432 2334566777766653 444443
No 290
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=37.17 E-value=53 Score=25.38 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=51.3
Q ss_pred CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE--cCCCCcCCCCccCCCCcEEEeCCcccccc
Q 020548 50 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKFISG 127 (324)
Q Consensus 50 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~~~~ 127 (324)
.+.++|++++ +.....+++- +|.+..++++++.++++|-.+++ |-+ .++..+. .+.+++. +.+++
T Consensus 17 r~~~~l~~al-~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli-~Gls~d~--~ai~fL~----~~~~p 83 (192)
T 3kts_A 17 HNQKDMEKIL-ELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLV-NGLKNDD--YAIDFLC----TEICP 83 (192)
T ss_dssp SSSHHHHHHT-TSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGE-ETCCCSH--HHHHHHH----HTTCC
T ss_pred cCHHHHHHHH-cCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCch-hccCCcH--HHHHHHH----hCCCC
Confidence 4889999999 5556777764 46778899999999999876665 332 2222211 1222222 33332
Q ss_pred CCCeeEEEEEcChhHHHHHHHh
Q 020548 128 GADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 128 ~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
-|.+..+...+...++.
T Consensus 84 -----dGIIsTk~~~i~~Ak~~ 100 (192)
T 3kts_A 84 -----DGIISTRGNAIMKAKQH 100 (192)
T ss_dssp -----SEEEESCHHHHHHHHHT
T ss_pred -----CEEEeCcHHHHHHHHHC
Confidence 27777777777766654
No 291
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=36.95 E-value=16 Score=32.36 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.5
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
.|...+++++++.||++|+-||+|-++
T Consensus 66 ~Gt~~df~~lv~~aH~~Gi~VilD~V~ 92 (441)
T 1lwj_A 66 YGSEREFKEMIEAFHDSGIKVVLDLPI 92 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355567999999999999999999987
No 292
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=36.91 E-value=43 Score=27.59 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=41.7
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CC---HHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SD---HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d---~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
..+++..+.|. |..- + +|++...+.. .+ +.++.+.+++.++++|+.++-.++ -..+.|+
T Consensus 164 ~~~vt~H~af~-Y~~~------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~l~ 231 (282)
T 3mfq_A 164 RYLVTPHDAFN-YFAA------S-YDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTNP----ERMKKLQ 231 (282)
T ss_dssp CEEECSSSCCH-HHHH------H-TTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSCT----HHHHHHH
T ss_pred cEEEEECchHH-HHHH------H-CCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----HHHHHHH
Confidence 44555667665 3332 2 6777654321 13 445555555578999987754332 1246777
Q ss_pred HHHHhcCCEEEE
Q 020548 87 RLAHDKGVTVVV 98 (324)
Q Consensus 87 ~l~~~~~~~~iv 98 (324)
++|++.|+.+++
T Consensus 232 ~~a~~~g~~v~~ 243 (282)
T 3mfq_A 232 EAVKAKGGQVEV 243 (282)
T ss_dssp HHHHTTSCCCEE
T ss_pred HHHHhcCCceEE
Confidence 888998876543
No 293
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=36.88 E-value=19 Score=31.81 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=24.4
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
.|...+++++++.||++|+-||.|-++-+
T Consensus 78 ~Gt~~d~~~lv~~ah~~Gi~vilD~V~NH 106 (424)
T 2dh2_A 78 FGSKEDFDSLLQSAKKKSIRVILDLTPNY 106 (424)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEECCTTT
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 35556789999999999999999999733
No 294
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=36.81 E-value=16 Score=32.02 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=24.3
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
.|...+++++++.||++|+-||+|-++-+
T Consensus 65 ~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH 93 (405)
T 1ht6_A 65 YGNAAELKSLIGALHGKGVQAIADIVINH 93 (405)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECcCc
Confidence 35556789999999999999999999733
No 295
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=36.80 E-value=15 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
++...|...+++++++.||++|+-||+|-|+
T Consensus 67 idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~ 97 (471)
T 1jae_A 67 INTRSGDESAFTDMTRRCNDAGVRIYVDAVI 97 (471)
T ss_dssp SEETTEEHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3334577778999999999999999999997
No 296
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=36.36 E-value=79 Score=26.38 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------C---CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~---d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
+..+++..+.|.=+.. + +|++...+.. . ++.++.+.+++.++++|+.+.-.++ +.+
T Consensus 190 ~~~~v~~H~af~Yfa~-------~-yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~-------k~~ 254 (307)
T 3ujp_A 190 QRFLVSCEGAFSYLAR-------D-YGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQ 254 (307)
T ss_dssp GCEEEEEESTTHHHHH-------H-TTCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHH
T ss_pred CCEEEEECchHHHHHH-------H-CCCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh-------HHH
Confidence 4567777777663332 2 6777654321 1 4555555665678999998865554 455
Q ss_pred HHHHHhcCCEE
Q 020548 86 SRLAHDKGVTV 96 (324)
Q Consensus 86 ~~l~~~~~~~~ 96 (324)
..++++.|+.+
T Consensus 255 ~~ia~e~g~~v 265 (307)
T 3ujp_A 255 KQVAQATGARF 265 (307)
T ss_dssp HHTTTTTCCEE
T ss_pred HHHHHHhCCce
Confidence 66778888775
No 297
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=36.32 E-value=36 Score=31.11 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCccccc-ChHHHHHHHHhcCCEEEEcCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAVA-NIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~ivD~~ 101 (324)
.+.+++++ +..+++|.+--.+....... -.+++.++|+++|+.+|+++-
T Consensus 28 ~~~ve~al-~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~ 77 (540)
T 3nl6_A 28 YGQVEAGL-QNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDR 77 (540)
T ss_dssp HHHHHHHH-HTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSC
T ss_pred HHHHHHHH-HCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCc
Confidence 46777788 77788888866555444443 356888999999999998763
No 298
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=36.19 E-value=1.8e+02 Score=24.22 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=40.8
Q ss_pred cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC-CEEEEcCCC
Q 020548 40 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF 102 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~-~~~ivD~~~ 102 (324)
.++++...|..|.+.+.+++++.++..|+.....+ .+.....+.+.|++.| +..++=.+|
T Consensus 60 ~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~---n~~~~~~l~~aa~~~g~v~~~v~S~~ 120 (346)
T 3i6i_A 60 KGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGE---SILDQIALVKAMKAVGTIKRFLPSEF 120 (346)
T ss_dssp TTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCGG---GGGGHHHHHHHHHHHCCCSEEECSCC
T ss_pred CCcEEEEeecCCHHHHHHHHhhCCCCEEEECCchh---hHHHHHHHHHHHHHcCCceEEeeccc
Confidence 47888888888999999999544667776654321 2333468889999888 655543444
No 299
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.84 E-value=98 Score=24.87 Aligned_cols=68 Identities=7% Similarity=0.043 Sum_probs=38.5
Q ss_pred CCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 23 TLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 23 p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
|.|......++..+.+ .|..+...... ....+.+.+...++..+++...... .+..+.+++.++++|.
T Consensus 23 ~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~~l~~~~iPvV~ 94 (288)
T 3gv0_A 23 GFTSQMVFGITEVLST-TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-------DPRVRFMTERNMPFVT 94 (288)
T ss_dssp CHHHHHHHHHHHHHTT-SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-------CHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-------cHHHHHHhhCCCCEEE
Confidence 3344445555555555 78887776543 2234444453578888887653321 2345556667877653
No 300
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=35.62 E-value=53 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=29.6
Q ss_pred cCCceEEEEecCCCC-----------cccccChHHHHHHHHhcCCEEEE
Q 020548 61 QGRTKVLYFESISNP-----------TLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 61 ~~~~~~v~~~~~~np-----------tG~~~~~~~i~~l~~~~~~~~iv 98 (324)
.-.+..|+++-. |. .|......++.++|++||..++.
T Consensus 165 Gl~PagVicEi~-~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIV-DDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBE-ECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeC-CCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345677777654 55 79999999999999999988874
No 301
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=35.51 E-value=1e+02 Score=26.25 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=31.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
+++++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+++=.
T Consensus 244 ~~~~~~~~i~~~~~d~v~ik~--~~~GGit~~~~i~~~A~~~g~~~~~~~ 291 (368)
T 1sjd_A 244 SARAAADAIKLGAVQIVNIKP--GRVGGYLEARRVHDVCAAHGIPVWCGG 291 (368)
T ss_dssp SHHHHHHHHHTTCCSEEEECT--TTTTSHHHHHHHHHHHHHTTCCEEECC
T ss_pred CHHHHHHHHHcCCCCEEEecc--cccCCHHHHHHHHHHHHHcCCcEEeCC
Confidence 566777666444556666543 456677777888888888888755443
No 302
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=34.96 E-value=24 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.6
Q ss_pred hHHHHHHHHhcCCEEEEcCC
Q 020548 82 IPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~ 101 (324)
-.+|+++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 46899999999999999964
No 303
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=34.60 E-value=18 Score=32.37 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.6
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCC
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
.|...+++++++.||++|+-||+|-|+-
T Consensus 94 ~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 94 YGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 3445578999999999999999999873
No 304
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=34.18 E-value=20 Score=31.82 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
.+++++++.||++|+-||+|-+.
T Consensus 84 ~~~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 84 ADFKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEEEcc
Confidence 46889999999999999999986
No 305
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=34.13 E-value=18 Score=32.35 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.2
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
|...+++++++.||++|+-||+|-++-
T Consensus 94 Gt~~df~~lv~~~h~~Gi~VilD~V~N 120 (475)
T 2z1k_A 94 GGNEALRHLLEVAHAHGVRVILDGVFN 120 (475)
T ss_dssp TCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 445578999999999999999999873
No 306
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=33.81 E-value=1.2e+02 Score=24.31 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=31.7
Q ss_pred ceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCC
Q 020548 41 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 94 (324)
Q Consensus 41 g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~ 94 (324)
++++...|..|.+.+.+++ + ++..|+-.....+...+.-...+.+.|++.++
T Consensus 45 ~~~~~~~D~~d~~~~~~~~-~-~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 45 GITVRQADYGDEAALTSAL-Q-GVEKLLLISSSEVGQRAPQHRNVINAAKAAGV 96 (286)
T ss_dssp TCEEEECCTTCHHHHHHHT-T-TCSEEEECC--------CHHHHHHHHHHHHTC
T ss_pred CCeEEEcCCCCHHHHHHHH-h-CCCEEEEeCCCCchHHHHHHHHHHHHHHHcCC
Confidence 5677777888999999988 4 45666654432222223345678888887764
No 307
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=33.58 E-value=17 Score=32.62 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.9
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
|...+++++++.||++|+-||+|-++-
T Consensus 100 Gt~~df~~Lv~~aH~~Gi~VilD~V~N 126 (488)
T 2wc7_A 100 GGNEAFKELLDAAHQRNIKVVLDGVFN 126 (488)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 444568899999999999999999873
No 308
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A
Probab=33.49 E-value=66 Score=28.37 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=55.8
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+.+=+-+.+.+|..+.-...+..+..+ . .+++.--+. .+++++.+.++.....+|.+.. |-.|-+.+..++++
T Consensus 285 l~~y~i~~iEdPl~~~D~~g~~~l~~~-~g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~--~~~GGitea~~i~~ 361 (432)
T 2ptz_A 285 AHDYPIVSIEDPYDQDDFAGFAGITEA-LKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKI--NQIGTISEAIASSK 361 (432)
T ss_dssp HHHSCEEEEECCSCTTCHHHHHHHHHH-TTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH--HHHCCHHHHHHHHH
T ss_pred HHhCCceEEECCCCcchHHHHHHHHHh-cCCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecc--cccCCHHHHHHHHH
Confidence 344457788888776555555433333 3 345533232 4788888888445566666543 45788888899999
Q ss_pred HHHhcCCEEEEc
Q 020548 88 LAHDKGVTVVVD 99 (324)
Q Consensus 88 l~~~~~~~~ivD 99 (324)
+|+++|+.+++=
T Consensus 362 lA~~~g~~v~~~ 373 (432)
T 2ptz_A 362 LCMENGWSVMVS 373 (432)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEec
Confidence 999999988664
No 309
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=33.43 E-value=1.3e+02 Score=21.39 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=34.6
Q ss_pred EEEecCCCHHHHHHhhhc-CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 44 TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 44 ~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
+.-++.+..+.+..++ . .++.+++++.-.. +-+++.++|+++|++++.=
T Consensus 55 l~I~~G~r~~~~l~a~-~~~~~~~iIlt~g~~------~~~~i~~~A~~~~ipvl~t 104 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTAL-EMPNVRCLILTGNLE------PVQLVLTKAEERGVPVILT 104 (139)
T ss_dssp EEEEETTCHHHHHHHT-TCTTEEEEEEETTCC------CCHHHHHHHHHHTCCEEEC
T ss_pred EEEEcCCHHHHHHHHH-hCCCCcEEEEcCCCC------CCHHHHHHHHHCCCeEEEE
Confidence 4444456666667777 5 6788888775433 3488889999999888753
No 310
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=33.35 E-value=34 Score=24.85 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=37.6
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccCh----HHHHHH-HHhcC-CEEEEcCCCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANI----PELSRL-AHDKG-VTVVVDNTFS 103 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~----~~i~~l-~~~~~-~~~ivD~~~~ 103 (324)
+.+.|.+.+++.++..+++--|-|+.|...+. ++.++. .++.+ -+..+||-++
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 68999999866789999999999999988642 233322 23345 4567999763
No 311
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=33.08 E-value=21 Score=35.56 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=22.8
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
..+++++++.||++|+-||+|-++-+.
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt 587 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHT 587 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecccc
Confidence 457889999999999999999998433
No 312
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=32.95 E-value=24 Score=23.93 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.6
Q ss_pred hHHHHHHHHhcCCEEEEcCC
Q 020548 82 IPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~ 101 (324)
-.+|.++|+++|++++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 46899999999999999964
No 313
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=32.81 E-value=28 Score=32.18 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=36.5
Q ss_pred CHHHHHHhh---hcCCceEEEEecCC----C-------------CcccccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 51 DHEMVNSAI---VQGRTKVLYFESIS----N-------------PTLAVANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 51 d~~~l~~~l---~~~~~~~v~~~~~~----n-------------ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
|+..+.+.| ++-.+..|.+.++. | ..|...+++++++.||++|+-||+|-++.+.
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 244 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccC
Confidence 555655554 22367788876521 1 1123346889999999999999999997443
No 314
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=32.63 E-value=18 Score=31.76 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.0
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.|...+++++++.||++|+-||+|-++-+.
T Consensus 71 ~G~~~d~~~lv~~~h~~Gi~VilD~V~NH~ 100 (422)
T 1ua7_A 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHT 100 (422)
T ss_dssp TEEHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 477788999999999999999999997433
No 315
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=32.36 E-value=67 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=32.2
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++..-..|. -...+..+|.+++++++.
T Consensus 26 G~~~v~kai~~gkaklViiA~D~~~~----~~~~i~~~c~~~~ip~~~ 69 (104)
T 4a18_G 26 GYKSTIKAIRNGTAKLVFISNNCPTV----RKSEIEYYASLAQISIHH 69 (104)
T ss_dssp SHHHHHHHHHHTCCCEEEECTTSCHH----HHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHcCCceEEEEeCCCCHH----HHHHHHHHHHHcCCcEEE
Confidence 45677788867888999986533332 257778889999999884
No 316
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=32.32 E-value=21 Score=34.90 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.9
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCC
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
..+++++++.||++|+-||+|-++-
T Consensus 369 ~~efk~lV~~~H~~GI~VILDvV~N 393 (877)
T 3faw_A 369 IAELKQLIHDIHKRGMGVILDVVYN 393 (877)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeec
Confidence 4568899999999999999999973
No 317
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=32.18 E-value=20 Score=32.19 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.6
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-|+
T Consensus 95 Gt~~df~~lv~~~H~~Gi~VilD~V~ 120 (484)
T 2aaa_A 95 GTADNLKSLSDALHARGMYLMVDVVP 120 (484)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44457899999999999999999997
No 318
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=32.04 E-value=1.2e+02 Score=24.76 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCCchhHHHHHhhhcCcccceeEEEecCC-CHH----HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEE
Q 020548 22 RTLYGGTHALLTHFFPRACNITTTFVDIS-DHE----MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 96 (324)
Q Consensus 22 ~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~----~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 96 (324)
+|.|......++..+.. .|..+...... |.+ .++..+ ..++..|++...... ...+..+.+++.|+++
T Consensus 14 ~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPv 86 (313)
T 3m9w_A 14 LERWQKDRDIFVKKAES-LGAKVFVQSANGNEETQMSQIENMI-NRGVDVLVIIPYNGQ-----VLSNVVKEAKQEGIKV 86 (313)
T ss_dssp SSTTHHHHHHHHHHHHH-TSCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSSTT-----SCHHHHHHHHTTTCEE
T ss_pred ChHHHHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChh-----hhHHHHHHHHHCCCeE
Confidence 46666666666666655 78887776554 443 344444 578888888754221 2345667777788876
Q ss_pred E-EcC
Q 020548 97 V-VDN 100 (324)
Q Consensus 97 i-vD~ 100 (324)
| +|.
T Consensus 87 V~~~~ 91 (313)
T 3m9w_A 87 LAYDR 91 (313)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 6 454
No 319
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=31.84 E-value=1.1e+02 Score=26.99 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=54.3
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEec--CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
=+-..+.+|..+.-...+..+..+ . .+++.--+ ..++.++.+.++.....+|.+.. |..|-+.+..+++++|+
T Consensus 283 ~~i~~iEePl~~~d~~~~~~l~~~-~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~--~~~GGite~~~i~~~A~ 359 (431)
T 2fym_A 283 YPIVSIEDGLDESDWDGFAYQTKV-LGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKF--NQIGSLTETLAAIKMAK 359 (431)
T ss_dssp SCEEEEESCSCTTCHHHHHHHHHH-HTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECG--GGTCSHHHHHHHHHHHH
T ss_pred CCceEEECCCCcccHHHHHHHHHH-hCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECc--cccCCHHHHHHHHHHHH
Confidence 357788888776544444333322 3 34443322 23788888888555566766653 46788888899999999
Q ss_pred hcCCEEEEcC
Q 020548 91 DKGVTVVVDN 100 (324)
Q Consensus 91 ~~~~~~ivD~ 100 (324)
++|+.+++-.
T Consensus 360 ~~g~~~~~~h 369 (431)
T 2fym_A 360 DAGYTAVISH 369 (431)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEEeC
Confidence 9999887643
No 320
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=31.74 E-value=50 Score=26.31 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=40.0
Q ss_pred CHHHHHHhhhcCCceEEEEecC--CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESI--SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVV 118 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~--~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~ 118 (324)
+.+++.+++ ......|++... .+| ..++++.+.++++|..+++|-.-........+.|+|++.
T Consensus 90 ~~~~i~~~~-~~Gad~V~l~~~~~~~p----~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 90 FLDDVDALA-QAGAAIIAVDGTARQRP----VAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIG 154 (232)
T ss_dssp SHHHHHHHH-HHTCSEEEEECCSSCCS----SCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHH-HcCCCEEEECccccCCH----HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEE
Confidence 456666666 556677776553 244 467888888998899988875321111223455888875
No 321
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=31.51 E-value=26 Score=23.79 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.5
Q ss_pred hHHHHHHHHhcCCEEEEcCC
Q 020548 82 IPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~ 101 (324)
-.+|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 46899999999999999964
No 322
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=31.32 E-value=71 Score=28.28 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=56.5
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
+.+=+-+.+.+|..+.-...+..+..+ ..+++.--+. .+++++.+.+...-..+|.+.. |..|.+.+..+++++|
T Consensus 283 l~~y~i~~IEdPl~~dD~~g~~~L~~~-~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv--~qiGGitea~~ia~lA 359 (439)
T 2akz_A 283 VRDYPVVSIEDPFDQDDWAAWSKFTAN-VGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKV--NQIGSVTEAIQACKLA 359 (439)
T ss_dssp HHHSCEEEEECCSCTTCHHHHHHHHHT-CSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH--HHHCCHHHHHHHHHHH
T ss_pred HHhCCCcEEECCCCcccHHHHHHHHhC-CCCEEEeCCCccCCHHHHHHHHHhCCCCEEEech--hhcCCHHHHHHHHHHH
Confidence 444457888888776655555444433 4555543332 3788888888444456666543 5678888889999999
Q ss_pred HhcCCEEEEc
Q 020548 90 HDKGVTVVVD 99 (324)
Q Consensus 90 ~~~~~~~ivD 99 (324)
+++|+.+++=
T Consensus 360 ~~~g~~~~~s 369 (439)
T 2akz_A 360 QENGWGVMVS 369 (439)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCeEEee
Confidence 9999876653
No 323
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=31.22 E-value=69 Score=28.40 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=51.4
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+++=.-+.+.+|....-...|+.+..+ .+ +++.--+. .+++.+.+.+......++.+-. |-.|.+.+..++++
T Consensus 294 le~ypIv~IEDPl~~dD~eg~a~Lt~~-lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKv--nQIGgITEalka~~ 370 (452)
T 3otr_A 294 LKKYPIISVEDPFDQDDFASFSAFTKD-VGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKV--NQIGSVTEAIEACL 370 (452)
T ss_dssp HHHSCEEEEECCSCTTCHHHHHHHHHH-HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECH--HHHCCHHHHHHHHH
T ss_pred HhhhCceEEecCCChhhHHHHHHHHHh-hCCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeec--cccccHHHHHHHHH
Confidence 333346667777665555555444333 34 44433222 2677777777444555555543 45677788889999
Q ss_pred HHHhcCCEEEEc
Q 020548 88 LAHDKGVTVVVD 99 (324)
Q Consensus 88 l~~~~~~~~ivD 99 (324)
+|+++|..+++=
T Consensus 371 lA~~~G~~vmvs 382 (452)
T 3otr_A 371 LAQKSGWGVQVS 382 (452)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEe
Confidence 999999876664
No 324
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=30.49 E-value=1.1e+02 Score=24.70 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=49.9
Q ss_pred CCEEEEcCC---CchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 15 GGHVVAART---LYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 15 gd~vl~~~p---~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+.+|++..+ .|.--...+..++.. .|.++++...+ .++++.+++...++.+|.++.... .....++++++..+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~-~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~--~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRA-NGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMT--TTMYAFKEVNDMLL 199 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHH-TTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCT--TTTTHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecc--CCHHHHHHHHHHHH
Confidence 346666553 333333333334444 78888776432 567777777567889999887533 33456778888777
Q ss_pred hcC--CEEEEcC
Q 020548 91 DKG--VTVVVDN 100 (324)
Q Consensus 91 ~~~--~~~ivD~ 100 (324)
+.+ +.+++=.
T Consensus 200 ~~~~~~~v~vGG 211 (258)
T 2i2x_B 200 ENGIKIPFACGG 211 (258)
T ss_dssp TTTCCCCEEEES
T ss_pred hcCCCCcEEEEC
Confidence 754 4555443
No 325
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=30.29 E-value=64 Score=28.46 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=54.2
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEec--CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+++=+-+.+.+|....-...+..+..+ .+ +.+.--+ ..++.++.+.++.....++.+.. |-.|-+.+..++++
T Consensus 276 l~~y~i~~IEdPl~~dD~eg~~~L~~~-~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv--~~iGGiTealkia~ 352 (428)
T 3tqp_A 276 TKKYPVISIEDGLSENDWAGWKLLTER-LENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKL--NQIGTLTETLATVG 352 (428)
T ss_dssp HHHSCEEEEECCSCTTCHHHHHHHHHH-HTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH--HHHCCHHHHHHHHH
T ss_pred HhhcccceEeCCCCcccHHHHHHHHHh-cCCCcceeccccccCCHHHHHHHHHhCCCCEEEecc--cccCCHHHHHHHHH
Confidence 444457788888766544445433333 34 3222111 12788888888445556655543 56788888899999
Q ss_pred HHHhcCCEEEEcC
Q 020548 88 LAHDKGVTVVVDN 100 (324)
Q Consensus 88 l~~~~~~~~ivD~ 100 (324)
+|+++|..+++=-
T Consensus 353 lA~~~G~~~~v~H 365 (428)
T 3tqp_A 353 LAKSNKYGVIISH 365 (428)
T ss_dssp HHHHTTCEEEEEC
T ss_pred HHHHcCCeEEEeC
Confidence 9999999866643
No 326
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=30.27 E-value=2e+02 Score=23.74 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCCEEE
Q 020548 83 PELSRLAHDKGVTVV 97 (324)
Q Consensus 83 ~~i~~l~~~~~~~~i 97 (324)
.++.+.|+++|+.++
T Consensus 184 ~~l~~~~~~~gI~v~ 198 (298)
T 1vp5_A 184 QEEIEFMRNYNIQPE 198 (298)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEE
Confidence 345555555555544
No 327
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=30.25 E-value=23 Score=32.66 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=21.3
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
.+++++++.||++|+-||+|-|.-
T Consensus 93 ~df~~lv~~aH~~Gi~VilD~V~N 116 (570)
T 1m53_A 93 EDFDSLVAEMKKRNMRLMIDVVIN 116 (570)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHCCCEEEEEEecc
Confidence 468899999999999999999973
No 328
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=30.17 E-value=1.4e+02 Score=26.91 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=38.7
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEec
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+++||+|.+..+.-..+...+-... + .|..+..++.. ..+++...+++-++++++...
T Consensus 77 v~~gd~V~i~~~n~~~~~~~~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 77 LGKGDTALVQLPNVAEFYIVFFALL-K-AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHH-H-HTCEEEECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-H-hCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 6799999988876655554442222 2 67766666554 667777777556788888764
No 329
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=30.08 E-value=99 Score=25.00 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=8.1
Q ss_pred HHHHhhhcCCceEEEEecCC
Q 020548 54 MVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~~~ 73 (324)
.+.+.+++.+.+.|++.+|+
T Consensus 132 ~~~~~~~~~Gl~~I~lvaP~ 151 (252)
T 3tha_A 132 DLIKECERYNIALITLVSVT 151 (252)
T ss_dssp HHHHHHHHTTCEECEEEETT
T ss_pred HHHHHHHHcCCeEEEEeCCC
Confidence 33333333444444444443
No 330
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=30.01 E-value=26 Score=32.35 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.7
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
..+++++++.||++|+-||+|-++.+.
T Consensus 222 ~~df~~lv~~~H~~Gi~VilD~V~NH~ 248 (588)
T 1j0h_A 222 KETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcC
Confidence 346889999999999999999997433
No 331
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=29.99 E-value=90 Score=26.95 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=31.2
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
+++++++.++.....+|.+. |-+.+..+++++|+++|+.+.+=
T Consensus 254 ~~~~~~~~i~~~~~d~v~ik------GGit~a~~i~~~A~~~gi~~~~~ 296 (389)
T 2oz8_A 254 DLQGKRLLLEAHAADILNVH------GQVTDVMRIGWLAAELGIPISIG 296 (389)
T ss_dssp CHHHHHHHHHTTCCSEEEEC------SCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CHHHHHHHHHcCCCCEEEEC------cCHHHHHHHHHHHHHcCCeEeec
Confidence 66777777745556676665 77777788888888888777665
No 332
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=29.97 E-value=1.4e+02 Score=22.09 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHHHccCCCCEEEEcCCCchhHHH-HHhhhcCcccceeEEEecCCCHHHHHHhhh--cCCceEEEEecCCCCcccccC
Q 020548 5 SSVLMQLCSSGGHVVAARTLYGGTHA-LLTHFFPRACNITTTFVDISDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 5 ~~~~~~~~~~gd~vl~~~p~y~~~~~-~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~--~~~~~~v~~~~~~nptG~~~~ 81 (324)
..+...+.+.+++|.+..-....... .+...+.+ .|..+..++ +.+.+...+. +++.-+|+++ .+|...+
T Consensus 39 ~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~--~~~~~~~~~~~~~~~d~vI~iS----~sG~t~~ 111 (183)
T 2xhz_A 39 TLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAS-TGTPSFFVH--PGEAAHGDLGMVTPQDVVIAIS----NSGESSE 111 (183)
T ss_dssp HHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHT-TTCCEEECC--TTHHHHHTSTTCCTTCEEEEEC----SSSCCHH
T ss_pred HHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHh-cCceEEEeC--chHHhhhhhccCCCCCEEEEEe----CCCCCHH
Confidence 33444444544477776654433221 11122223 577766654 3333332221 3333334433 3577778
Q ss_pred hHHHHHHHHhcCCE--EEEcCC
Q 020548 82 IPELSRLAHDKGVT--VVVDNT 101 (324)
Q Consensus 82 ~~~i~~l~~~~~~~--~ivD~~ 101 (324)
+-++++.+++.|+. .|.|..
T Consensus 112 ~~~~~~~ak~~g~~vi~IT~~~ 133 (183)
T 2xhz_A 112 ITALIPVLKRLHVPLICITGRP 133 (183)
T ss_dssp HHHHHHHHHTTTCCEEEEESCT
T ss_pred HHHHHHHHHHCCCCEEEEECCC
Confidence 88899999998854 445543
No 333
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=29.86 E-value=95 Score=22.43 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 54 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
.+...+++.++.+|+-..-.+ .....|-..|++.|-+++++++..
T Consensus 87 ~i~d~i~~g~i~lVInt~~~~-~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLPNNN-TKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp CHHHHHHTTSCCEEEECCCCC-GGGHHHHHHHHHHHHHTTCCEECS
T ss_pred cHHHHHHCCCceEEEECCCCC-CcCCccHHHHHHHHHHhCCCeEcC
Confidence 466667577888887654222 222346779999999999998743
No 334
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=29.78 E-value=25 Score=32.44 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=23.0
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
...+++++++.||++|+-||+|-|+.+.
T Consensus 218 t~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 218 DLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 3346889999999999999999987433
No 335
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=29.73 E-value=1.4e+02 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=22.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc-CCEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVV 97 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~~~i 97 (324)
+.+.+.+.+++...+.+++.+|+.+ .+++.++++.- |.+.+
T Consensus 136 e~~~~~~~~~~~gl~~i~liaP~t~------~eri~~i~~~~~gfvY~ 177 (267)
T 3vnd_A 136 ESAPFSKAAKAHGIAPIFIAPPNAD------ADTLKMVSEQGEGYTYL 177 (267)
T ss_dssp GCHHHHHHHHHTTCEEECEECTTCC------HHHHHHHHHHCCSCEEE
T ss_pred hHHHHHHHHHHcCCeEEEEECCCCC------HHHHHHHHHhCCCcEEE
Confidence 4455555564566777777665544 25555666554 34433
No 336
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=29.61 E-value=56 Score=25.95 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=39.8
Q ss_pred CHHHHHHhhhcCCceEEEEecC--CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESI--SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVV 118 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~--~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~ 118 (324)
+.+++.++. ......|++... .+| ..++++.+.++++|..+++|-.-........+.|+|++.
T Consensus 90 ~~~~i~~~~-~aGad~I~l~~~~~~~p----~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 90 YLQDVDALA-QAGADIIAFDASFRSRP----VDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIG 154 (229)
T ss_dssp SHHHHHHHH-HHTCSEEEEECCSSCCS----SCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHH-HcCCCEEEECccccCCh----HHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEE
Confidence 455666666 556677776553 244 467888888998899888875321111223445888885
No 337
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=29.42 E-value=24 Score=32.39 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.2
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-|+
T Consensus 76 Gt~~df~~lv~~~h~~Gi~VilD~V~ 101 (558)
T 1uok_A 76 GTMEDWDELLHEMHERNMKLMMDLVV 101 (558)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 33346889999999999999999997
No 338
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=29.41 E-value=1.5e+02 Score=24.18 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=36.6
Q ss_pred cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC-CEEEE
Q 020548 40 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVV 98 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~-~~~iv 98 (324)
.|+++...|..|.+.+.+++ + ++..|+..... . .......+.+.|++.| +--++
T Consensus 58 ~~v~~v~~Dl~d~~~l~~a~-~-~~d~vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 58 LGAIIVKGELDEHEKLVELM-K-KVDVVISALAF--P-QILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp TTCEEEECCTTCHHHHHHHH-T-TCSEEEECCCG--G-GSTTHHHHHHHHHHHCCCCEEE
T ss_pred CCCEEEEecCCCHHHHHHHH-c-CCCEEEECCch--h-hhHHHHHHHHHHHhcCCCCEEE
Confidence 46788888888999999998 4 46666654321 1 1334578888888877 54444
No 339
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=29.33 E-value=25 Score=32.27 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.5
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
|...+++++++.||++|+-||+|-|+-+
T Consensus 77 Gt~~df~~Lv~~aH~~Gi~VilD~V~NH 104 (557)
T 1zja_A 77 GTMEDFDRLMAELKKRGMRLMVDVVINH 104 (557)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 4445789999999999999999999733
No 340
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=29.25 E-value=2.2e+02 Score=22.68 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=33.4
Q ss_pred ceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcc--cccChHHHHHHHHhcCC
Q 020548 41 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL--AVANIPELSRLAHDKGV 94 (324)
Q Consensus 41 g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG--~~~~~~~i~~l~~~~~~ 94 (324)
++++...|..|.+.+.+++ + ++..|+-....++.. .+.-...+.+.|++.++
T Consensus 46 ~~~~~~~D~~d~~~l~~~~-~-~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~ 99 (287)
T 2jl1_A 46 GVEVRHGDYNQPESLQKAF-A-GVSKLLFISGPHYDNTLLIVQHANVVKAARDAGV 99 (287)
T ss_dssp TCEEEECCTTCHHHHHHHT-T-TCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEeccCCHHHHHHHH-h-cCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCC
Confidence 5677777888999999988 4 466666554332221 12234577788887765
No 341
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=29.20 E-value=87 Score=21.01 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=31.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+-..|. -...+..+|++++++++.
T Consensus 22 G~~~v~kai~~gka~lViiA~D~~~~----~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 22 GEEQVVKAVQNGQVTLVILSSDAGIH----TKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp SHHHHHHHHHTTCCSEEEEETTSCHH----HHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHcCCCcEEEEeCCCCHH----HHHHHHHHHHHcCCCEEE
Confidence 35677788867889999987644442 246788889999988653
No 342
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=28.94 E-value=28 Score=32.28 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.7
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-|+
T Consensus 206 Gt~~dfk~Lv~~aH~~GI~VilD~V~ 231 (599)
T 3bc9_A 206 GTKGELENAIDALHNNDIKVYFDAVL 231 (599)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44457889999999999999999997
No 343
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae}
Probab=28.07 E-value=74 Score=28.27 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=54.0
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+++=+-+.+.+|..+.-...+..+..+ .+ +++.--+. .++.++.+.+......+|.+.. |..|-+.+..++++
T Consensus 302 le~y~i~~IEdPl~~dD~eg~~~L~~~-~~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv--~~iGGiTea~kia~ 378 (449)
T 3uj2_A 302 CERYPIVSIEDGLDEEDWEGWQYMTRE-LGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKL--NQIGTVSETLEAIK 378 (449)
T ss_dssp HHHSCEEEEESCSCTTCHHHHHHHHHH-HTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH--HHHCSHHHHHHHHH
T ss_pred HHhcCceEEECCCCcchHHHHHHHHHH-hCCCceEECCcceeCCHHHHHHHHHcCCCCEEEECc--cccCCHHHHHHHHH
Confidence 444457788888766544444433333 32 33322222 1588888888445556665543 45788888899999
Q ss_pred HHHhcCCEEEEc
Q 020548 88 LAHDKGVTVVVD 99 (324)
Q Consensus 88 l~~~~~~~~ivD 99 (324)
+|+++|+.+++=
T Consensus 379 lA~~~Gi~~~v~ 390 (449)
T 3uj2_A 379 MAHKAGYTAVVS 390 (449)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEe
Confidence 999999986654
No 344
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=28.01 E-value=26 Score=33.05 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.5
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-++
T Consensus 113 Gt~~dfk~Lv~~aH~~GI~VilD~V~ 138 (686)
T 1d3c_A 113 GTIADFQNLIAAAHAKNIKVIIDFAP 138 (686)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 44457899999999999999999987
No 345
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=27.78 E-value=26 Score=32.80 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=35.4
Q ss_pred CHHHHHHhh---hcCCceEEEEecC----CC-------------CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 51 DHEMVNSAI---VQGRTKVLYFESI----SN-------------PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l---~~~~~~~v~~~~~----~n-------------ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|+..+.+.| ++-.+.+|.++++ ++ ..|...+++++++.||++|+-||+|-|+
T Consensus 237 dl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~ 308 (645)
T 4aef_A 237 DLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVF 308 (645)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEecc
Confidence 566665554 1235677777652 11 1233346889999999999999999997
No 346
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=27.72 E-value=83 Score=30.44 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=50.1
Q ss_pred CCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhc-CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 22 RTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 22 ~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
-|+|++..+.... .+. ....+..+|.. -++.++++. + ..++.+++-+..-|- .+.+++.++|+++|+.++==
T Consensus 550 vp~y~sv~ea~~~-~p~-~DlaVI~vP~~~v~~av~ea~-~~~Gvk~~Viis~Gf~e---~~~~~l~~~A~~~g~rliGP 623 (829)
T 3pff_A 550 IPVFKNMADAMRK-HPE-VDVLINFASLRSAYDSTMETM-NYAQIRTIAIIAEGIPE---ALTRKLIKKADQKGVTIIGP 623 (829)
T ss_dssp EEEESSHHHHHHH-CTT-CCEEEECCCTTTHHHHHHHHT-TSTTCCEEEECCSCCCH---HHHHHHHHHHHHHTCEEECS
T ss_pred cccCCcHHHHhhc-cCC-CcEEEEeCCHHHHHHHHHHHH-hhCCCCEEEEeCCCCCH---HHHHHHHHHHHHcCCEEEcC
Confidence 5888888876632 111 35667777765 456777777 6 678877765433332 35678999999999887755
Q ss_pred CCC
Q 020548 100 NTF 102 (324)
Q Consensus 100 ~~~ 102 (324)
++.
T Consensus 624 Nc~ 626 (829)
T 3pff_A 624 ATV 626 (829)
T ss_dssp SCC
T ss_pred CCc
Confidence 553
No 347
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=27.58 E-value=24 Score=32.97 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.9
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCc
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSP 104 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~ 104 (324)
..+++++++.||++|+-||+|-++.+
T Consensus 181 ~~~~~~lv~~~H~~Gi~VilD~V~nH 206 (637)
T 1gjw_A 181 DEEFKAFVEACHILGIRVILDFIPRT 206 (637)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 35678889999999999999999743
No 348
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.55 E-value=1.2e+02 Score=24.56 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=39.8
Q ss_pred chhHHHHHhhhcCcccceeEEEecCCCHHH----HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE-Ec
Q 020548 25 YGGTHALLTHFFPRACNITTTFVDISDHEM----VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV-VD 99 (324)
Q Consensus 25 y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~----l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i-vD 99 (324)
|......++..+.. .|..+...+..|.+. ++..+ ..++..|++.+... .......+.+++.|+++| +|
T Consensus 17 ~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~-----~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 17 FQTEWKFADKAGKD-LGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTPDP-----KLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHH-HTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECSCG-----GGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCc-----hhhHHHHHHHHHCCCcEEEeC
Confidence 33344444444444 688887776666543 44444 56788888875322 123455666777888876 45
No 349
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=27.55 E-value=25 Score=32.07 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.2
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-++
T Consensus 76 Gt~~df~~lv~~~h~~Gi~VilD~V~ 101 (543)
T 2zic_A 76 GNMADMDNLLTQAKMRGIKIIMDLVV 101 (543)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 33446889999999999999999997
No 350
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=27.16 E-value=88 Score=21.24 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=31.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++..-..|. -.+.+..+|..+++.++.
T Consensus 26 G~~~v~kai~~gkaklVilA~D~~~~----~~~~i~~~c~~~~ip~~~ 69 (105)
T 3u5e_c 26 GYKSTVKSLRQGKSKLIIIAANTPVL----RKSELEYYAMLSKTKVYY 69 (105)
T ss_dssp SHHHHHHHHHTTCCSEEEECTTSCHH----HHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHcCCceEEEEeCCCCHH----HHHHHHHHHHHcCCCEEE
Confidence 45677788867888999986522221 247888899999999983
No 351
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=27.11 E-value=33 Score=33.70 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.0
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
..+++++++.||++|+-||+|-++-+.
T Consensus 531 ~~dfk~LV~~aH~~GI~VILDvV~NHt 557 (921)
T 2wan_A 531 ITELKQLIQSLHQQRIGVNMDVVYNHT 557 (921)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 467889999999999999999998433
No 352
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.91 E-value=2.2e+02 Score=23.49 Aligned_cols=66 Identities=8% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCchhHHHHHhhhcCcccceeEEEecCC-CHHH----HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 23 TLYGGTHALLTHFFPRACNITTTFVDIS-DHEM----VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 23 p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~----l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
|.|......++..+.. .|..+...+.. +.+. ++..+ ..+++.|++...... .+..+.+++.++++|
T Consensus 81 ~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdGiIi~~~~~~-------~~~~~~l~~~~iPvV 151 (344)
T 3kjx_A 81 MVFPEVLTGINQVLED-TELQPVVGVTDYLPEKEEKVLYEML-SWRPSGVIIAGLEHS-------EAARAMLDAAGIPVV 151 (344)
T ss_dssp SSHHHHHHHHHHHHTS-SSSEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCC-------HHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEECCCCC-------HHHHHHHHhCCCCEE
Confidence 4555555556566666 78887665543 4443 33333 567888888643321 245566667776654
No 353
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=26.88 E-value=29 Score=32.83 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.2
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-++
T Consensus 105 Gt~~df~~Lv~~aH~~GikVilD~V~ 130 (686)
T 1qho_A 105 GNWTTFDTLVNDAHQNGIKVIVDFVP 130 (686)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 33346889999999999999999987
No 354
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Probab=26.76 E-value=33 Score=33.27 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
...|...+++++++.||++|+-||+|-|+-+.
T Consensus 687 ~~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~ 718 (844)
T 3aie_A 687 NKYGTADDLVKAIKALHSKGIKVMADWVPDQM 718 (844)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccCcc
Confidence 34566678999999999999999999997443
No 355
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=26.75 E-value=29 Score=32.77 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.3
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-++
T Consensus 109 Gt~~df~~Lv~~aH~~GIkVilD~V~ 134 (680)
T 1cyg_A 109 GTLSDFQRLVDAAHAKGIKVIIDFAP 134 (680)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33456889999999999999999987
No 356
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=26.59 E-value=26 Score=32.13 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.2
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||+|-++.+.
T Consensus 168 ~d~~~lv~~~h~~Gi~VilD~V~NH~ 193 (558)
T 3vgf_A 168 EGFRKLVDEAHKKGLGVILDVVYNHV 193 (558)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeccc
Confidence 46889999999999999999997444
No 357
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=26.55 E-value=29 Score=32.75 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-++
T Consensus 114 Gt~~dfk~Lv~~aH~~GikVilD~V~ 139 (683)
T 3bmv_A 114 GSFTDFQNLINTAHAHNIKVIIDFAP 139 (683)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 33446889999999999999999987
No 358
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.50 E-value=52 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 54 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
-++++. +.+++.|+++. |.. -+++.++|+++|+.++- ++
T Consensus 74 ~v~e~~-~~g~k~v~~~~-----G~~--~~e~~~~a~~~Girvv~-nC 112 (122)
T 3ff4_A 74 EYNYIL-SLKPKRVIFNP-----GTE--NEELEEILSENGIEPVI-GC 112 (122)
T ss_dssp GHHHHH-HHCCSEEEECT-----TCC--CHHHHHHHHHTTCEEEE-SC
T ss_pred HHHHHH-hcCCCEEEECC-----CCC--hHHHHHHHHHcCCeEEC-Cc
Confidence 344444 44667777653 222 27999999999999884 54
No 359
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=26.36 E-value=30 Score=32.09 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=36.0
Q ss_pred CHHHHHHhh---hcCCceEEEEecCC-CC------c--------------ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 51 DHEMVNSAI---VQGRTKVLYFESIS-NP------T--------------LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l---~~~~~~~v~~~~~~-np------t--------------G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|+..+.+.| ++-.+.+|+++++. ++ . |...+++++++.||++|+-||+|-++
T Consensus 146 dl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 221 (601)
T 3edf_A 146 DIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVL 221 (601)
T ss_dssp CHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEEEECC
Confidence 566666554 23467788876632 11 1 22335889999999999999999997
No 360
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=26.28 E-value=1.3e+02 Score=20.85 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=31.5
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+-..|.+. ...+..+|++++++++.
T Consensus 31 G~~~v~kal~~gka~lViiA~D~~~~~~---~~~l~~lc~~~~Vp~~~ 75 (119)
T 1rlg_A 31 GTNETTKAVERGLAKLVYIAEDVDPPEI---VAHLPLLCEEKNVPYIY 75 (119)
T ss_dssp SHHHHHHHHTTTCCSEEEEESCCSCSTT---TTHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHcCCCcEEEEeCCCChHHH---HHHHHHHHHHcCCCEEE
Confidence 4677778886678899998764444322 36777889999987553
No 361
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=26.27 E-value=1.3e+02 Score=21.53 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=31.5
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+-..|... ...+..+|++++++++.
T Consensus 45 G~~~v~kal~~gkaklViiA~D~~~~~~---~~~l~~lc~~~~IP~~~ 89 (135)
T 2aif_A 45 GANEATKALNRGIAEIVLLAADAEPLEI---LLHLPLVCEDKNTPYVF 89 (135)
T ss_dssp SHHHHHHHHHTTCEEEEEEETTCSCHHH---HHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHcCCCeEEEEecCCChHHH---HhHHHHHHHhcCCcEEE
Confidence 4667778886778899998764344221 26788889999987653
No 362
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=26.08 E-value=2.6e+02 Score=23.85 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=35.3
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
+++++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+=..
T Consensus 248 ~~~~~~~~i~~~~~d~v~ik~--~~~GGit~~~~i~~~A~~~g~~~~~~~~ 296 (379)
T 2rdx_A 248 GLHMAQRIVADRGAEICCLKI--SNLGGLSKARRTRDFLIDNRMPVVAEDS 296 (379)
T ss_dssp SHHHHHHHHHHTCCSEEEEET--TTTTSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CHHHHHHHHHcCCCCEEEEec--cccCCHHHHHHHHHHHHHcCCeEEEeec
Confidence 677777777555667777654 3567777778888999998887776643
No 363
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.07 E-value=72 Score=24.43 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=40.9
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+...|.+|++..|.-..-. .-.....+ .|.........+.+++.+.+ ..+..+|++.=.+.-+-. .++.+.+++.
T Consensus 32 ~~~~g~kV~v~k~~~d~r~-~~~~i~s~-~g~~~~a~~~~~~~~i~~~~-~~~~dvViIDEaqfl~~~--~v~~l~~l~~ 106 (191)
T 1xx6_A 32 AKIAKQKIQVFKPEIDNRY-SKEDVVSH-MGEKEQAVAIKNSREILKYF-EEDTEVIAIDEVQFFDDE--IVEIVNKIAE 106 (191)
T ss_dssp HHHTTCCEEEEEEC--------CEEECT-TSCEEECEEESSSTHHHHHC-CTTCSEEEECSGGGSCTH--HHHHHHHHHH
T ss_pred HHHCCCEEEEEEeccCccc-hHHHHHhh-cCCceeeEeeCCHHHHHHHH-hccCCEEEEECCCCCCHH--HHHHHHHHHh
Confidence 3456778887765543211 11122333 45544333333445666655 445678888654442211 1455555555
Q ss_pred hcCCEEEE
Q 020548 91 DKGVTVVV 98 (324)
Q Consensus 91 ~~~~~~iv 98 (324)
+ |+.+|+
T Consensus 107 ~-~~~Vi~ 113 (191)
T 1xx6_A 107 S-GRRVIC 113 (191)
T ss_dssp T-TCEEEE
T ss_pred C-CCEEEE
Confidence 4 888887
No 364
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=25.89 E-value=2.7e+02 Score=22.64 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=36.6
Q ss_pred cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC-CEEEE
Q 020548 40 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVV 98 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~-~~~iv 98 (324)
.++++...|..|.+.+.+++ + ++..|+.+... . .......+.+.|++.| +--++
T Consensus 56 ~~v~~v~~D~~d~~~l~~a~-~-~~d~vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 56 MGVTIIEGEMEEHEKMVSVL-K-QVDIVISALPF--P-MISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp TTCEEEECCTTCHHHHHHHH-T-TCSEEEECCCG--G-GSGGGHHHHHHHHHHCCCCEEE
T ss_pred CCcEEEEecCCCHHHHHHHH-c-CCCEEEECCCc--c-chhhHHHHHHHHHHhCCccEEe
Confidence 46788888888999999998 4 35666654321 1 1334578888898887 54444
No 365
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=25.82 E-value=30 Score=32.76 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=35.1
Q ss_pred CHHHHHHhh---hcCCceEEEEecC----CC-------------CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 51 DHEMVNSAI---VQGRTKVLYFESI----SN-------------PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l---~~~~~~~v~~~~~----~n-------------ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|++.+.+.| ++-.+.+|+++++ ++ ..|...+++++++.||++|+-||+|-++
T Consensus 263 dl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~ 334 (696)
T 4aee_A 263 DLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITM 334 (696)
T ss_dssp CHHHHHTTHHHHHHHTCCEEEECCCEEESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 555555544 1235677777652 11 1233346889999999999999999997
No 366
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=25.63 E-value=37 Score=33.71 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=25.8
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
....|...+++++++.||++|+-||+|-|+
T Consensus 906 ~~~yGt~edfk~LV~alH~~GI~VIlDvV~ 935 (1108)
T 3ttq_A 906 PTKYGTDGDLRATIQALHHANMQVMADVVD 935 (1108)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 444566678999999999999999999997
No 367
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=25.50 E-value=32 Score=31.84 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFS 103 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~ 103 (324)
.+++++++.||++|+-||+|-|+-
T Consensus 88 ~df~~lv~~~h~~Gi~VilD~V~N 111 (589)
T 3aj7_A 88 EDCFALIEKTHKLGMKFITDLVIN 111 (589)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeccc
Confidence 468899999999999999999973
No 368
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=25.45 E-value=2.4e+02 Score=26.93 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=49.8
Q ss_pred CEEEEcCC---CchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 16 GHVVAART---LYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 16 d~vl~~~p---~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
-+|++... .|..-...+..++.. .|.+++....+ .++++.++..+.++.+|.++.... +....+.++++..++
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~-~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~--~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFAD-LGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAA--GHKTLVPELIKELNS 681 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHH-TTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSS--CHHHHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHh-CCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEeeecH--HHHHHHHHHHHHHHh
Confidence 35665552 344333444444444 79999876654 688888877678899999987533 344457888888888
Q ss_pred cCC
Q 020548 92 KGV 94 (324)
Q Consensus 92 ~~~ 94 (324)
.|.
T Consensus 682 ~G~ 684 (762)
T 2xij_A 682 LGR 684 (762)
T ss_dssp TTC
T ss_pred cCC
Confidence 763
No 369
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=25.40 E-value=31 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.3
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||.|-++.+.
T Consensus 193 ~d~~~lv~~~H~~Gi~VilD~V~NH~ 218 (602)
T 2bhu_A 193 EDLMALVDAAHRLGLGVFLDVVYNHF 218 (602)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccc
Confidence 46889999999999999999997443
No 370
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.12 E-value=1.2e+02 Score=24.04 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=37.3
Q ss_pred hHHHHHhhhcCcccceeEEEecCC-CHHH----HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE-EcC
Q 020548 27 GTHALLTHFFPRACNITTTFVDIS-DHEM----VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV-VDN 100 (324)
Q Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~~~-d~~~----l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i-vD~ 100 (324)
.....++..+.+ .|..+...+.. +.+. ++... ..++..|++..... .+..+.+++.++++| +|.
T Consensus 24 ~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~--------~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 24 ELFKGISSILES-RGYIGVLFDANADIEREKTLLRAIG-SRGFDGLILQSFSN--------PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHT-TTCEEEEEECTTCHHHHHHHHHHHH-TTTCSEEEEESSCC--------HHHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCc--------HHHHHHHHHCCCCEEEEec
Confidence 333444444445 68887766554 4332 33333 67888888875432 455666677787654 554
Q ss_pred C
Q 020548 101 T 101 (324)
Q Consensus 101 ~ 101 (324)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 371
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=25.04 E-value=27 Score=32.03 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.2
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|...+++++++.||++|+-||+|-+.
T Consensus 76 Gt~~d~~~lv~~~h~~Gi~vilD~V~ 101 (555)
T 2ze0_A 76 GTMDDFDELLAQAHRRGLKVILDLVI 101 (555)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 33446889999999999999999887
No 372
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=24.99 E-value=82 Score=27.87 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=53.7
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEec--CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
=+-..+.+|..+.-...+..+..+ . .+++.--+ ..++.++.+.++.....+|.+.. +..|-+.+..+++++|+
T Consensus 295 ~~i~~iEePl~~~d~~~~~~l~~~-~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~--~~~GGitea~~ia~lA~ 371 (444)
T 1w6t_A 295 YPIITIEDGMDENDWDGWKALTER-LGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKV--NQIGTLTETFEAIEMAK 371 (444)
T ss_dssp SCEEEEESCSCTTCHHHHHHHHHH-HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECH--HHHCSHHHHHHHHHHHH
T ss_pred CCcEEEECCCChhhHHHHHHHHHh-hCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcc--cccCCHHHHHHHHHHHH
Confidence 457788888876544444333322 3 34443322 23678888888555566666643 45678888889999999
Q ss_pred hcCCEEEEc
Q 020548 91 DKGVTVVVD 99 (324)
Q Consensus 91 ~~~~~~ivD 99 (324)
++|+.+++-
T Consensus 372 ~~g~~v~~~ 380 (444)
T 1w6t_A 372 EAGYTAVVS 380 (444)
T ss_dssp HTTCEEEEE
T ss_pred HCCCeEEec
Confidence 999988873
No 373
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=24.98 E-value=1.4e+02 Score=20.83 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=31.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+-..|... ...+..+|++++++++.
T Consensus 32 G~~~v~kal~~gka~lViiA~D~~~~~~---~~~l~~lc~~~~Vp~~~ 76 (124)
T 2fc3_A 32 GTNETTKAVERGLAKLVVIAEDVDPPEI---VMHLPLLCDEKKIPYVY 76 (124)
T ss_dssp SHHHHHHHHHTTCCSEEEEETTCSSGGG---TTTHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHcCCceEEEEcCCCChHHH---HHHHHHHHHHcCCCEEE
Confidence 4667778886778899998764445332 35667789999977543
No 374
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=24.95 E-value=3.1e+02 Score=23.82 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=53.8
Q ss_pred HHccCCC-CEEEEc-CCCch-hHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEec-CCCC------ccc
Q 020548 9 MQLCSSG-GHVVAA-RTLYG-GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES-ISNP------TLA 78 (324)
Q Consensus 9 ~~~~~~g-d~vl~~-~p~y~-~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~-~~np------tG~ 78 (324)
..+++.| |.|++. ...++ .....++..... +++++..-...+.+..+.+. +...++|.+.. +... .|.
T Consensus 150 ~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~-~~i~Vi~g~V~t~e~A~~a~-~aGAD~I~vG~g~Gs~~~tr~~~g~ 227 (400)
T 3ffs_A 150 KLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK-MNIDVIVGNVVTEEATKELI-ENGADGIKVGIGPGSICTTRIVAGV 227 (400)
T ss_dssp HHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT-CCCEEEEEEECSHHHHHHHH-HTTCSEEEECC---------CCSCB
T ss_pred HHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc-CCCeEEEeecCCHHHHHHHH-HcCCCEEEEeCCCCcCccccccccc
Confidence 3445555 555442 33333 234444433333 46665432345788887777 66788888721 1110 111
Q ss_pred -ccC---hHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEE
Q 020548 79 -VAN---IPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV 118 (324)
Q Consensus 79 -~~~---~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~ 118 (324)
... +.++++.+++.++++|.|.=-. .-....+..|+|.+.
T Consensus 228 g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 228 GVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp CCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred chhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 122 3455555566789999984310 001123455777665
No 375
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.85 E-value=1.2e+02 Score=24.97 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=41.2
Q ss_pred CCchhHHHHHhhhcCcccceeEEEecCC-CHH----HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 23 TLYGGTHALLTHFFPRACNITTTFVDIS-DHE----MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 23 p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~----~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
|.|......++..+.. .|..+...... |.+ .++..+ ..++..|++.... + .......+.+++.|+++|
T Consensus 16 ~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~i~~~~-~~~vdgiIi~~~~-~----~~~~~~~~~~~~~giPvV 88 (330)
T 3uug_A 16 ARWIDDGNNIVKQLQE-AGYKTDLQYADDDIPNQLSQIENMV-TKGVKVLVIASID-G----TTLSDVLKQAGEQGIKVI 88 (330)
T ss_dssp THHHHHHHHHHHHHHH-TTCEEEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSS-G----GGGHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHH-cCCEEEEeeCCCCHHHHHHHHHHHH-HcCCCEEEEEcCC-c----hhHHHHHHHHHHCCCCEE
Confidence 4444444555555555 68887665543 443 344444 5678888876432 1 223556677778898766
Q ss_pred -EcC
Q 020548 98 -VDN 100 (324)
Q Consensus 98 -vD~ 100 (324)
+|.
T Consensus 89 ~~~~ 92 (330)
T 3uug_A 89 AYDR 92 (330)
T ss_dssp EESS
T ss_pred EECC
Confidence 454
No 376
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=24.84 E-value=37 Score=31.66 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
+++++++-||++|+-||+|-|+
T Consensus 164 d~~~Lv~~ah~~GI~VilD~V~ 185 (628)
T 1g5a_A 164 DLREVIAALHEAGISAVVDFIF 185 (628)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEEec
Confidence 5889999999999999999987
No 377
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=24.83 E-value=1.8e+02 Score=24.73 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=35.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
+.+++.+.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+=..
T Consensus 250 ~~~~~~~~~~~~~~d~v~~k~--~~~GGit~~~~i~~~A~~~g~~~~~~~~ 298 (370)
T 1chr_A 250 TLASAFDLARDRSVDVFSLKL--CNMGGVSATQKIAAVAEASGIASYGGTM 298 (370)
T ss_dssp SHHHHHHHHTTTSCSEEEECT--TTSCSHHHHHHHHHHHHHHTCEEEECCS
T ss_pred CHHHHHHHHHcCCCCEEEECc--cccCCHHHHHHHHHHHHHcCCeEEecCC
Confidence 677777777444566666553 3467777888999999999999876543
No 378
>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A
Probab=24.73 E-value=38 Score=33.65 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=25.2
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
.+.|...+++++++.||++|+-||+|-|+
T Consensus 740 ~~~Gt~~efk~lV~alH~~GI~VIlDvV~ 768 (1039)
T 3klk_A 740 NKYGSDEDLRNALQALHKAGLQAIADWVP 768 (1039)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 34566678999999999999999999997
No 379
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.70 E-value=1.8e+02 Score=20.39 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=32.7
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++-+|++.+..-. ....+...+.. .|..+.... +.++..+.+...++.+|++..
T Consensus 6 ~~~~ILivdd~~~-~~~~l~~~L~~-~g~~v~~~~--~~~~al~~l~~~~~dlii~D~ 59 (154)
T 3gt7_A 6 RAGEILIVEDSPT-QAEHLKHILEE-TGYQTEHVR--NGREAVRFLSLTRPDLIISDV 59 (154)
T ss_dssp -CCEEEEECSCHH-HHHHHHHHHHT-TTCEEEEES--SHHHHHHHHTTCCCSEEEEES
T ss_pred CCCcEEEEeCCHH-HHHHHHHHHHH-CCCEEEEeC--CHHHHHHHHHhCCCCEEEEeC
Confidence 3456777665443 33334444444 577776543 777777777566788888875
No 380
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=24.61 E-value=1.6e+02 Score=26.84 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=48.2
Q ss_pred cCCCCEEEEcCCCchhHHHHHh---hhcCcccceeEEE-----ecC---CCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 12 CSSGGHVVAARTLYGGTHALLT---HFFPRACNITTTF-----VDI---SDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~---~~~~~~~g~~~~~-----~~~---~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
++|||.|+++...-+++..... +.+.+ .|+++.+ +.. .+-++|...++.-+++.++.. .|...
T Consensus 321 ~~~~d~vi~s~~~ipGne~~~~~~~~~l~~-~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipv-----HGe~~ 394 (555)
T 3zq4_A 321 INPGDTVVFSSSPIPGNTISVSRTINQLYR-AGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPI-----HGEYR 394 (555)
T ss_dssp CCTTCEEEECSCCCTTCHHHHHHHHHHHHH-TTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEE-----SBCHH
T ss_pred cCCCCEEEEECCCCCCcHHHHHHHHHHHHH-CCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEc-----CCCHH
Confidence 5689999999977666542211 11223 5777754 221 277888887744567766633 36665
Q ss_pred ChHHHHHHHHhcCC
Q 020548 81 NIPELSRLAHDKGV 94 (324)
Q Consensus 81 ~~~~i~~l~~~~~~ 94 (324)
.+.+.++++++.|+
T Consensus 395 ~~~~~~~~a~~~G~ 408 (555)
T 3zq4_A 395 MQKMHVKLATDCGI 408 (555)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 66777788887664
No 381
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.59 E-value=1.7e+02 Score=20.39 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=32.1
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
-..+..+++++.+.++|++.+--.|. .-...+..+|+++|++++.-.
T Consensus 24 G~~~v~kai~~gkakLViiA~D~~~~---~~~~~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 24 GVKEVVKALRKGEKGLVVIAGDIWPA---DVISHIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp SHHHHHHHHHHSCCCEEEECTTCSCT---THHHHHHHHHHHTCCCEEECC
T ss_pred cHHHHHHHHHcCCceEEEEeCCCCHH---HHHHHHHHHHHhcCCcEEEEC
Confidence 35677777767888999986532331 014677899999999876443
No 382
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=24.58 E-value=1.3e+02 Score=27.85 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=46.5
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+++||+|.+.-|.-..+...+-... + .|.....++.. ..+.+...+++-++++++........|...++.+..
T Consensus 129 v~~Gd~V~i~~~~~~e~vva~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~ 202 (652)
T 1pg4_A 129 IKKGDVVAIYMPMVPEAAVAMLACA-R-IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNV 202 (652)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHH-H-HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHH
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHH-H-cCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHH
Confidence 6799999888876655544442222 3 67777776654 678888888666788888765433344444544433
No 383
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=24.49 E-value=1.1e+02 Score=21.61 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=23.7
Q ss_pred HHHHHhhhcCCceEEEEecCCCCcccccC-------hHHHHHHHHhcCCE
Q 020548 53 EMVNSAIVQGRTKVLYFESISNPTLAVAN-------IPELSRLAHDKGVT 95 (324)
Q Consensus 53 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~-------~~~i~~l~~~~~~~ 95 (324)
+-+.+++ ..+...|++.+ |.|+|...| .+++.+.++--|+.
T Consensus 58 ei~~~Al-~~~A~~vIl~H-NHPSG~~~PS~~D~~~T~~l~~a~~ll~I~ 105 (126)
T 2qlc_A 58 EIFKAAI-RESAHSIILVH-NHPSGDVQPSNADKQVTSILKKAGDLLQIE 105 (126)
T ss_dssp HHHHHHH-HTTCSEEEEEE-ECSSSCCSCCHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHH-HcCCcEEEEEe-cCCCCCCCCCHHHHHHHHHHHHHHHHCCCe
Confidence 3445566 55655555542 457777754 33666666665654
No 384
>3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni}
Probab=24.39 E-value=87 Score=27.50 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=55.7
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC--CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI--SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++++=+-+.+.+|....-...+..+..+ .| +++.--+. .++.++.+.++.....++.+.. |..|.+.+..+++
T Consensus 273 ll~~y~i~~IEdPl~~dD~e~~~~L~~~-~g~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv--~qiGGiTea~kia 349 (417)
T 3qn3_A 273 LCAKYPICSIEDGLAENDFEGWIKLTEK-LGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKP--NQIGTITQTMRTV 349 (417)
T ss_dssp HHHHSCEEEEESSSCTTCHHHHHHHHHH-HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECH--HHHCSHHHHHHHH
T ss_pred HHhhcceeEEecCCCcccHHHHHHHHHh-hCCCCceecCCcccCCHHHHHHHHHhCCCCEEEecC--CCCCCHHHHHHHH
Confidence 3444457788888766555555443333 32 44432221 1488888888555566665543 5678888899999
Q ss_pred HHHHhcCCEEEEcC
Q 020548 87 RLAHDKGVTVVVDN 100 (324)
Q Consensus 87 ~l~~~~~~~~ivD~ 100 (324)
++|+++|..+++=-
T Consensus 350 ~lA~~~G~~v~vsh 363 (417)
T 3qn3_A 350 RLAQRNNYKCVMSH 363 (417)
T ss_dssp HHHHHTTCEEEEEC
T ss_pred HHHHHcCCeEEEeC
Confidence 99999999887654
No 385
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=24.37 E-value=39 Score=31.51 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.3
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||+|-++.++
T Consensus 203 ~~~~~lv~~~H~~Gi~VilD~V~NH~ 228 (618)
T 3m07_A 203 DDFKAFIDAAHGYGLSVVLDIVLNHF 228 (618)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEEeecCccC
Confidence 35889999999999999999998444
No 386
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=24.36 E-value=3e+02 Score=22.70 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=30.0
Q ss_pred ecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 47 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 47 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
+...+.+.+++++...+++..+.....||.-. -.++.+.|+++|+.++.=
T Consensus 165 vSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~---~~~l~~~~~~~gi~v~a~ 214 (312)
T 1zgd_A 165 VSNFSVKKLENLLSVATVLPAVNQVEMNLAWQ---QKKLREFCNAHGIVLTAF 214 (312)
T ss_dssp EESCCHHHHHHHHTTCSSCCSEEEEECBTTBC---CHHHHHHHHHTTCEEEEE
T ss_pred EeCCCHHHHHHHHHhCCCCceEEeeecCcccC---CHHHHHHHHHcCCEEEEe
Confidence 33347788888773333333333333344321 268999999999988743
No 387
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=24.20 E-value=43 Score=31.73 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.6
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
.+++++++.||++|+-||+|-++
T Consensus 321 edfk~LV~~aH~~GI~VilD~V~ 343 (695)
T 3zss_A 321 DDFDHFVTEAGKLGLEIALDFAL 343 (695)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEEeec
Confidence 35889999999999999999987
No 388
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=24.04 E-value=2.9e+02 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCEEEE
Q 020548 83 PELSRLAHDKGVTVVV 98 (324)
Q Consensus 83 ~~i~~l~~~~~~~~iv 98 (324)
.++.+.|+++|+.++.
T Consensus 176 ~~l~~~~~~~gi~v~a 191 (281)
T 1vbj_A 176 KALCEYCKSKNIAVTA 191 (281)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4677777777776653
No 389
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=23.97 E-value=1.8e+02 Score=26.58 Aligned_cols=58 Identities=7% Similarity=-0.060 Sum_probs=39.0
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEec
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+++||+|.+.-+.-..+...+-... + .|..+.+++.. ..+++...+++-+++++++..
T Consensus 108 v~~Gd~V~l~~~~~~e~~~~~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 108 IGKGDYVMLTLKSRYDFWYCMLGLH-K-LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp CCTTCEEEEECTTCTHHHHHHHHHH-H-HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHH-h-CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 6899999888766555444432222 3 67777776654 677888877666788888764
No 390
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=23.68 E-value=2.8e+02 Score=22.36 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=7.7
Q ss_pred HHHHhhhcCCceEEEEec
Q 020548 54 MVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~ 71 (324)
.++++.++++++.|=+++
T Consensus 125 ~l~~l~~~Gkir~iGvSn 142 (276)
T 3f7j_A 125 ALEKLYKDGKIRAIGVSN 142 (276)
T ss_dssp HHHHHHHTTSEEEEEEES
T ss_pred HHHHHHHcCCccEEEecc
Confidence 333333334555554443
No 391
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.48 E-value=1.3e+02 Score=20.13 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=31.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.+...+++++.+.++|++.+-..|. -...+..+|+.++++++.
T Consensus 23 G~~~v~kai~~gka~lViiA~D~~~~----~~~~i~~~c~~~~vp~~~ 66 (101)
T 3v7q_A 23 GEDLVIKEIRNARAKLVLLTEDASSN----TAKKVTDKCNYYKVPYKK 66 (101)
T ss_dssp SHHHHHHHHHTTCCSEEEEETTSCHH----HHHHHHHHHHHTTCCEEE
T ss_pred chhhhHHHHhcCceeEEEEecccccc----chhhhcccccccCCCeee
Confidence 45677788877889999987643332 246778889999887654
No 392
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=23.42 E-value=35 Score=31.78 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.2
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||+|-++.+.
T Consensus 205 ~~~~~lv~~~H~~Gi~VilD~V~NH~ 230 (617)
T 1m7x_A 205 DDFRYFIDAAHAAGLNVILDWVPGHF 230 (617)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCcc
Confidence 36889999999999999999998444
No 393
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=23.40 E-value=3.8e+02 Score=23.82 Aligned_cols=57 Identities=9% Similarity=-0.075 Sum_probs=38.1
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEe
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~ 70 (324)
+++||+|.+..+.-..+...+-... + .|..+..++.. ..+++...+++-++++++..
T Consensus 71 v~~gd~V~i~~~~~~~~~~~~la~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~ 128 (536)
T 3ni2_A 71 IQQGDVIMLFLPSSPEFVLAFLGAS-H-RGAIITAANPFSTPAELAKHAKASRAKLLITQ 128 (536)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHH-H-HTCEEEECCTTCCHHHHHHHHHHHTEEEEEEC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHH-H-hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEC
Confidence 6789999888766555444442222 2 67777777654 67888888855677777764
No 394
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=23.19 E-value=1.8e+02 Score=24.76 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=35.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
+++++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+=..
T Consensus 250 ~~~~~~~~i~~~~~d~v~ik~--~~~GGit~~~~i~~~A~~~g~~~~~~~~ 298 (371)
T 2ps2_A 250 NEMSIVKILADDAAEGIDLKI--SKAGGLTRGRRQRDICLAAGYSVSVQET 298 (371)
T ss_dssp SHHHHHHHHHHTCCSEEEEEH--HHHTSHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CHHHHHHHHHhCCCCEEEech--hhcCCHHHHHHHHHHHHHcCCeEEecCC
Confidence 677777777555666776653 3456677778999999999998877543
No 395
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=23.10 E-value=2.5e+02 Score=25.15 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=39.4
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEec
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+++||+|.+..+.-..+...+-... + .|..+..++.. ..+.+...+++-+++++++..
T Consensus 74 v~~gd~V~i~~~~~~~~~~~~lA~~-~-~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~ 132 (549)
T 3g7s_A 74 VRKGEHVGVCIPNSIDYVMTIYALW-R-VAATPVPINPMYKSFELEHILNDSEATTLVVHS 132 (549)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHH-H-TTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEG
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-H-hCCEEEccCCCCCHHHHHHHHHhcCCCEEEECh
Confidence 6799999888765554444332222 3 68777777654 678888888667788888754
No 396
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=23.02 E-value=1.8e+02 Score=24.99 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=31.0
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
+.+++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+=.
T Consensus 256 ~~~~~~~~i~~~~~d~v~~k~--~~~GGit~~~~ia~~A~~~gi~~~~~~ 303 (383)
T 3i4k_A 256 TPAEALAVVKAQAADVIALKT--TKHGGLLESKKIAAIAEAGGLACHGAT 303 (383)
T ss_dssp SHHHHHHHHHHTCCSEEEECT--TTTTSHHHHHHHHHHHHHTTCEEEECC
T ss_pred CHHHHHHHHHcCCCCEEEEcc--cccCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 566666666444555655543 345666677788888888888876544
No 397
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=23.01 E-value=2.2e+02 Score=21.26 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=36.9
Q ss_pred HhhhcCcccceeEEEecCCCHHHHHHhhhc---------------CCceEEEEecCCCCcccccChHHHHHHHHhc
Q 020548 32 LTHFFPRACNITTTFVDISDHEMVNSAIVQ---------------GRTKVLYFESISNPTLAVANIPELSRLAHDK 92 (324)
Q Consensus 32 ~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---------------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 92 (324)
+..++.. .++++.+++ +-++|.+++-- .+...+++..++--+-....++.|.+.|++.
T Consensus 78 i~alC~E-~~Ip~i~V~--s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~s~~~~a~~~l~~~~~e~ 150 (165)
T 2kg4_A 78 IQAFCCE-NDINILRVS--NPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRES 150 (165)
T ss_dssp HHHHHHH-TTCCEEEES--CHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCEEEEC--CHHHHHHHHCCcccccccccccCCCcccceEEEEeccccccccchHHHHHHHHHHHh
Confidence 3344445 789999987 88888888621 1245677666554432234577888888663
No 398
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=23.00 E-value=1.7e+02 Score=25.23 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=28.7
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
+..++.+.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+=.
T Consensus 263 ~~~~~~~~i~~~a~d~v~ik~--~~~GGit~~~~ia~~A~~~gi~~~~~~ 310 (393)
T 1wuf_A 263 SVKDVEQAHSIGSCRAINLKL--ARVGGMSSALKIAEYCALNEILVWCGG 310 (393)
T ss_dssp SHHHHHHHHHHTCCSEEEECT--GGGTSHHHHHHHHHHHHHTTCEEEECC
T ss_pred CHHHHHHHHHhCCCCEEEeCh--hhhCCHHHHHHHHHHHHHcCCeEEecC
Confidence 455555555333445555432 345666667778888888887776543
No 399
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*
Probab=22.94 E-value=88 Score=27.07 Aligned_cols=80 Identities=8% Similarity=-0.019 Sum_probs=45.4
Q ss_pred EEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE
Q 020548 18 VVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 18 vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i 97 (324)
..+..|..+.....+..+..+ .++++ --...+.+++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+.
T Consensus 218 ~~iEqP~~~~d~~~~~~l~~~-~~iPI-dE~~~~~~~~~~~~~~~~~d~v~~k~--~~~GGit~~~~ia~~A~~~gi~~~ 293 (391)
T 3gd6_A 218 EMIESPAPRNDFDGLYQLRLK-TDYPI-SEHVWSFKQQQEMIKKDAIDIFNISP--VFIGGLTSAKKAAYAAEVASKDVV 293 (391)
T ss_dssp CEEECCSCTTCHHHHHHHHHH-CSSCE-EEECCCHHHHHHHHHHTCCSEEEECH--HHHTSHHHHHHHHHHHHHTTCEEE
T ss_pred ceecCCCChhhHHHHHHHHHH-cCCCc-CCCCCCHHHHHHHHHcCCCCEEEECc--hhcCCHHHHHHHHHHHHHcCCEEE
Confidence 456666543322222222222 34444 22234677777777445566665543 245666677889999999999887
Q ss_pred EcCC
Q 020548 98 VDNT 101 (324)
Q Consensus 98 vD~~ 101 (324)
+=..
T Consensus 294 ~~~~ 297 (391)
T 3gd6_A 294 LGTT 297 (391)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7543
No 400
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=22.91 E-value=35 Score=31.95 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=35.2
Q ss_pred CHHHHHHhh---hcCCceEEEEecCC-CCc-----c--------------cccChHHHHHHHHhcCCEEEEcCCC
Q 020548 51 DHEMVNSAI---VQGRTKVLYFESIS-NPT-----L--------------AVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l---~~~~~~~v~~~~~~-npt-----G--------------~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|+..+.+.+ ++-.+.+|++.++. +|. | ...+++++++.||++|+-||+|-|+
T Consensus 104 dl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~VilD~V~ 178 (644)
T 3czg_A 104 TLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVL 178 (644)
T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 555555544 12267888887532 222 2 1235889999999999999999987
No 401
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=22.86 E-value=3.2e+02 Score=22.52 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=30.8
Q ss_pred CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 49 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
..+.+.++++++...++..+.....||.-. -.++.+.|+++|+.++.=..
T Consensus 154 n~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~---~~~l~~~~~~~gI~v~a~sp 203 (317)
T 1qwk_A 154 NWNNDQISRALALGLTPVHNSQVELHLYFP---QHDHVDFCKKHNISVTSYAT 203 (317)
T ss_dssp SCCHHHHHHHHTTCSSCCCEEEEECBTTBC---CHHHHHHHHHTTCEEEEEST
T ss_pred CCCHHHHHHHHHhcCCccceecceeccccC---cHHHHHHHHHcCCEEEEecC
Confidence 346788888873333333344433444321 26899999999998875433
No 402
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=22.69 E-value=2.6e+02 Score=23.41 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=30.5
Q ss_pred CCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 49 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 49 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
..+.+.++++++....+..+.....||.-. -.++.+.|+++|+.++.=..
T Consensus 179 n~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~---~~~l~~~~~~~gI~v~a~sP 228 (335)
T 3h7u_A 179 NFSTKKLADLLELARVPPAVNQVECHPSWR---QTKLQEFCKSKGVHLSAYSP 228 (335)
T ss_dssp SCCHHHHHHHHHHCSSCCSEEEEECBTTBC---CHHHHHHHHHHTCEEEEEST
T ss_pred CCCHHHHHHHHHhCCCCeEEEecccccccC---CHHHHHHHHHCCCEEEEecc
Confidence 346778887764333333344333444322 26899999999999886443
No 403
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=22.68 E-value=58 Score=25.76 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=39.3
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc----CCceEEEEecCCCCcccccChHHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+...|.+|++..|....- .......+ .|+....++..+.+++.+.+.+ .+..+|++.-.+.-+- .-++.+.
T Consensus 36 ~~~~g~kVli~~~~~d~r--~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~--~~ve~l~ 110 (223)
T 2b8t_A 36 LEYADVKYLVFKPKIDTR--SIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDD--RICEVAN 110 (223)
T ss_dssp HHHTTCCEEEEEECCCGG--GCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCT--HHHHHHH
T ss_pred HHhcCCEEEEEEeccCch--HHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcH--HHHHHHH
Confidence 344566777766555431 11122333 4543222222334445444422 3467788776654221 1233444
Q ss_pred HHHHhcCCEEEEcCC
Q 020548 87 RLAHDKGVTVVVDNT 101 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~ 101 (324)
.+++. |+.+|+=.-
T Consensus 111 ~L~~~-gi~Vil~Gl 124 (223)
T 2b8t_A 111 ILAEN-GFVVIISGL 124 (223)
T ss_dssp HHHHT-TCEEEEECC
T ss_pred HHHhC-CCeEEEEec
Confidence 44543 777776443
No 404
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=22.60 E-value=2.7e+02 Score=26.43 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=53.4
Q ss_pred CEEEEcC---CCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 16 GHVVAAR---TLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 16 d~vl~~~---p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
-+|++.. ..|..-...+..++.. .|.+++....+ .++++.++..+.++.+|.++.... +....+.++++..++
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~-~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~--~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYAD-LGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAG--GHLTLVPALRKELDK 673 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHH-HTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSS--CHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHh-CCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeecH--hHHHHHHHHHHHHHh
Confidence 3566555 2344433444444444 79999886654 688888877678999999987533 344457888888888
Q ss_pred cCC---EEEEcC
Q 020548 92 KGV---TVVVDN 100 (324)
Q Consensus 92 ~~~---~~ivD~ 100 (324)
.|. ++++=.
T Consensus 674 ~G~~~i~VivGG 685 (727)
T 1req_A 674 LGRPDILITVGG 685 (727)
T ss_dssp TTCTTSEEEEEE
T ss_pred cCCCCCEEEEcC
Confidence 764 555544
No 405
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.57 E-value=1.9e+02 Score=19.73 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=32.3
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
..-+|++.+..-. ....+...+.. .|.++.... +.++..+.+....+.+|++..
T Consensus 6 ~~~~iLivdd~~~-~~~~l~~~L~~-~g~~v~~~~--~~~~a~~~l~~~~~dlii~d~ 59 (142)
T 3cg4_A 6 HKGDVMIVDDDAH-VRIAVKTILSD-AGFHIISAD--SGGQCIDLLKKGFSGVVLLDI 59 (142)
T ss_dssp CCCEEEEECSCHH-HHHHHHHHHHH-TTCEEEEES--SHHHHHHHHHTCCCEEEEEES
T ss_pred CCCeEEEEcCCHH-HHHHHHHHHHH-CCeEEEEeC--CHHHHHHHHHhcCCCEEEEeC
Confidence 3456777665543 33333333334 577766543 777777777566788888875
No 406
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Probab=22.55 E-value=3.4e+02 Score=22.61 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=32.5
Q ss_pred eEEEecCCCHHHHHHhhhcCCc--eEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 43 TTTFVDISDHEMVNSAIVQGRT--KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 43 ~~~~~~~~d~~~l~~~l~~~~~--~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
+..-+...+.+.++++++..+. +..+.....||.- .-.++.+.|+++|+.++.=.
T Consensus 161 r~iGvSn~~~~~l~~~~~~~~~~~~p~v~Q~~~~~~~---~~~~l~~~~~~~gI~v~a~s 217 (331)
T 1s1p_A 161 KSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYF---NRSKLLDFCKSKDIVLVAYS 217 (331)
T ss_dssp EEEEEESCCHHHHHHHHTCTTCCCCCSEEEEECBTTB---CCHHHHHHHHHTTCEEEEES
T ss_pred cEEEEeCCCHHHHHHHHHhcCccCCCceeeeecCCCc---ChHHHHHHHHHcCCEEEEec
Confidence 3333444478888888733333 3233333345432 12689999999999887543
No 407
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=22.51 E-value=78 Score=26.10 Aligned_cols=110 Identities=8% Similarity=0.095 Sum_probs=57.9
Q ss_pred CCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccc-cChHHHHHHHHhcCCEEEEc
Q 020548 22 RTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 22 ~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~i~~l~~~~~~~~ivD 99 (324)
.|.|++..+..... . ..+-+.+++.. -.+.+++++ +.+++.+++-+. |.. .+.+++.+.++++++.++-.
T Consensus 50 ~~vy~sl~el~~~~--~-~Dv~Ii~vp~~~~~~~~~ea~-~~Gi~~vVi~t~----G~~~~~~~~l~~~a~~~gi~vigP 121 (288)
T 1oi7_A 50 VPVYDTVKEAVAHH--E-VDASIIFVPAPAAADAALEAA-HAGIPLIVLITE----GIPTLDMVRAVEEIKALGSRLIGG 121 (288)
T ss_dssp EEEESSHHHHHHHS--C-CSEEEECCCHHHHHHHHHHHH-HTTCSEEEECCS----CCCHHHHHHHHHHHHHHTCEEEES
T ss_pred EEeeCCHHHHhhcC--C-CCEEEEecCHHHHHHHHHHHH-HCCCCEEEEECC----CCCHHHHHHHHHHHHHcCCEEEeC
Confidence 35555555544210 1 33444554433 345555566 667885554332 332 34679999999999998888
Q ss_pred CCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 100 NTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 100 ~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
++.+-+. | + .....++.-.. ...+++ |++.-+-.+...+.
T Consensus 122 Nc~Gii~--~---~-~~~~~~~~~~~-~~~G~v-a~vsqSG~l~~~~~ 161 (288)
T 1oi7_A 122 NCPGIIS--A---E-ETKIGIMPGHV-FKRGRV-GIISRSGTLTYEAA 161 (288)
T ss_dssp SSCEEEE--T---T-TEEEESSCGGG-CCEEEE-EEEESCHHHHHHHH
T ss_pred CCCeEEc--C---C-CceeEEcccCC-CCCCCE-EEEECCHHHHHHHH
Confidence 8642221 2 1 12223332222 223455 88877765554443
No 408
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=22.50 E-value=1.5e+02 Score=25.13 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=31.6
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
+.+++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+-..
T Consensus 245 ~~~~~~~~l~~~~~d~v~~k~--~~~GGit~~~~i~~~A~~~gi~~~~~~~ 293 (354)
T 3jva_A 245 DAQDALELVKKGTVDVINIKL--MKCGGIHEALKINQICETAGIECMIGCM 293 (354)
T ss_dssp SHHHHHHHHHHTCCSEEEECH--HHHTSHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CHHHHHHHHHcCCCCEEEECc--hhcCCHHHHHHHHHHHHHcCCeEEecCC
Confidence 555555555334455555442 2345556678899999999999887654
No 409
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=22.47 E-value=2.9e+02 Score=22.35 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=7.0
Q ss_pred HHHHHHHhcCCEEE
Q 020548 84 ELSRLAHDKGVTVV 97 (324)
Q Consensus 84 ~i~~l~~~~~~~~i 97 (324)
++.+.|+++|+.++
T Consensus 172 ~l~~~~~~~gi~v~ 185 (278)
T 1hw6_A 172 EITDWAAAHDVKIE 185 (278)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCEEE
Confidence 45555555554444
No 410
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=22.36 E-value=3.4e+02 Score=22.53 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=32.8
Q ss_pred eEEEecCCCHHHHHHhhhcCCce--EEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 43 TTTFVDISDHEMVNSAIVQGRTK--VLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 43 ~~~~~~~~d~~~l~~~l~~~~~~--~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
+..-+...+.+.++++++..+++ .++.....||.- .-.++.+.|+++|+.++.=
T Consensus 164 r~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~---~~~~l~~~~~~~gI~v~a~ 219 (326)
T 3buv_A 164 KSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYF---TQPKLLKFCQQHDIVITAY 219 (326)
T ss_dssp EEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTB---CCHHHHHHHHHTTCEEEEE
T ss_pred cEEEEeCCCHHHHHHHHHhCCCCCCCeeeeeeccccc---CcHHHHHHHHHcCCEEEEe
Confidence 33334444788888887433433 334444445532 1268999999999988753
No 411
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.36 E-value=1.8e+02 Score=19.39 Aligned_cols=51 Identities=4% Similarity=0.083 Sum_probs=30.5
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|++.+..-. ....+...+.. .|..+.... +.++..+.+.+.++.+|++..
T Consensus 5 ~ilivdd~~~-~~~~l~~~L~~-~g~~v~~~~--~~~~a~~~l~~~~~dlii~D~ 55 (127)
T 3i42_A 5 QALIVEDYQA-AAETFKELLEM-LGFQADYVM--SGTDALHAMSTRGYDAVFIDL 55 (127)
T ss_dssp EEEEECSCHH-HHHHHHHHHHH-TTEEEEEES--SHHHHHHHHHHSCCSEEEEES
T ss_pred eEEEEcCCHH-HHHHHHHHHHH-cCCCEEEEC--CHHHHHHHHHhcCCCEEEEeC
Confidence 4555554433 33333344434 577776644 677777777567788888875
No 412
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=22.18 E-value=3.2e+02 Score=22.20 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=22.6
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
+.+.++++++....+..+.....||.-. -.++.++|+++|+.++.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~Q~~~~~~~~---~~~l~~~~~~~gi~v~a 200 (288)
T 4f40_A 156 HIHHLEDVLAMCTVTPMVNQVELHPLNN---QADLRAFCDAKQIKVEA 200 (288)
T ss_dssp CHHHHHHHHTTCSSCCCEEEEECBTTBC---CHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHhCCCCCeEEeccCccccC---CHHHHHHHHHCCCEEEE
Confidence 5666666652222222333323333211 14677778877777654
No 413
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=27.78 E-value=19 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=18.3
Q ss_pred hHHHHHHHHhcCCEEEEcCCC
Q 020548 82 IPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~ 102 (324)
-.+|.++|+++|++++.|..-
T Consensus 29 A~~I~e~A~e~~VPi~e~~~L 49 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPEL 49 (87)
Confidence 468999999999999999764
No 414
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=22.12 E-value=2e+02 Score=20.00 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=28.7
Q ss_pred HccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecC
Q 020548 10 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 10 ~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
.+.+.|-.|++.+..-....... . .|..+...+..+.+.++++- -.+.++|++..+
T Consensus 24 ~L~~~g~~V~~id~~~~~~~~~~-----~-~~~~~~~gd~~~~~~l~~~~-~~~~d~vi~~~~ 79 (141)
T 3llv_A 24 ELTAAGKKVLAVDKSKEKIELLE-----D-EGFDAVIADPTDESFYRSLD-LEGVSAVLITGS 79 (141)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHH-----H-TTCEEEECCTTCHHHHHHSC-CTTCSEEEECCS
T ss_pred HHHHCCCeEEEEECCHHHHHHHH-----H-CCCcEEECCCCCHHHHHhCC-cccCCEEEEecC
Confidence 34455655555554333222211 1 35555565666776666542 345667766554
No 415
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=22.05 E-value=3.2e+02 Score=22.66 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=32.5
Q ss_pred eEEEecCCCHHHHHHhhhcCCc--eEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcC
Q 020548 43 TTTFVDISDHEMVNSAIVQGRT--KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 43 ~~~~~~~~d~~~l~~~l~~~~~--~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~ 100 (324)
+..-+...+.+.++++++..+. +..+.....||.- .-.++.+.|+++|+.++.=.
T Consensus 161 r~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~---~~~~l~~~~~~~gI~v~a~s 217 (323)
T 1afs_A 161 KSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYL---NQSKMLDYCKSKDIILVSYC 217 (323)
T ss_dssp EEEEEESCCHHHHHHHHTCTTCCSCCSEEEEECBTTB---CCHHHHHHHHHHTCEEEEES
T ss_pred CEEEeeCCCHHHHHHHHHhcCcCCCCEEEeecccccc---chHHHHHHHHHcCCEEEEec
Confidence 3333334478888888733333 3233333344432 12689999999999987543
No 416
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=22.04 E-value=3.2e+02 Score=24.42 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=39.2
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEec
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+++||+|.+..+.-..+...+-... + .|..+..++.. ..+++...++.-++++++++.
T Consensus 72 v~~gd~V~i~~~~~~~~~~~~lA~~-~-~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 72 IQQKDRVVVQLPNIKEFFEVIFALF-R-LGALPVFALPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHH-H-HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHH-H-cCeEEecCCCCCCHHHHHHHHHhCCCCEEEecc
Confidence 6799999998876655544442222 3 57766666554 677888888667788888764
No 417
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.02 E-value=1.6e+02 Score=19.62 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=30.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+- .| ..-...+..+|++++++++.
T Consensus 19 G~~~v~kai~~gka~lViiA~D-~~---~~~~~~i~~~c~~~~ip~~~ 62 (99)
T 3j21_Z 19 GSNETIRLAKTGGAKLIIVAKN-AP---KEIKDDIYYYAKLSDIPVYE 62 (99)
T ss_dssp SHHHHHHHHHHTCCSEEEEECC-CC---HHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHcCCccEEEEeCC-CC---HHHHHHHHHHHHHcCCCEEE
Confidence 3567777886788899888653 11 22356788889999998643
No 418
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=21.98 E-value=1.6e+02 Score=20.46 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=31.0
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+-..|.+. ...+..+|++++++++.
T Consensus 33 G~~~v~kal~~gka~lViiA~D~~~~~~---~~~l~~lc~~~~Vp~~~ 77 (120)
T 1vq8_F 33 GTNETTKSIERGSAELVFVAEDVQPEEI---VMHIPELADEKGVPFIF 77 (120)
T ss_dssp SHHHHHHHHHHTCCSEEEEESCCSSGGG---TTTHHHHHHTTCCCEEE
T ss_pred CHHHHHHHHHcCCceEEEEeCCCChHHH---HHHHHHHHHhcCCCEEE
Confidence 4567777776778899998764445332 35667789999987553
No 419
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=21.94 E-value=1.9e+02 Score=20.40 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=31.4
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-..+..+++++.+.++|++..--.|- .-...|..+|++++++++.
T Consensus 28 G~~~v~Kai~~gka~LViiA~D~~p~---~~~~~i~~lc~~~~Ip~~~ 72 (126)
T 2xzm_U 28 GLHEVLRTIEAKQALFVCVAEDCDQG---NYVKLVKALCAKNEIKYVS 72 (126)
T ss_dssp SHHHHHHHHHHTCCSEEEEESSCCST---THHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHcCCceEEEEeCCCChH---HHHHHHHHHHHHhCCCEEE
Confidence 35666777767888999987533331 1236788899999998764
No 420
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=21.92 E-value=2.5e+02 Score=24.24 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=46.0
Q ss_pred HHHHccCCCC---EEEEcCCCchhHHHHHhhhcCcc-cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccCh
Q 020548 7 VLMQLCSSGG---HVVAARTLYGGTHALLTHFFPRA-CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 7 ~~~~~~~~gd---~vl~~~p~y~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 82 (324)
++..+.+.|+ .|.+.+-.-.........+.... ..+....+|..|.+++++++++.++.+|+.+.+... -
T Consensus 16 ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~~------~ 89 (405)
T 4ina_A 16 VAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPYQ------D 89 (405)
T ss_dssp HHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGGG------H
T ss_pred HHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCccc------C
Confidence 3344566664 67766654443333332221100 125566677778899999884435677776544211 1
Q ss_pred HHHHHHHHhcCCEEE
Q 020548 83 PELSRLAHDKGVTVV 97 (324)
Q Consensus 83 ~~i~~l~~~~~~~~i 97 (324)
..+.+.|-+.|+.++
T Consensus 90 ~~v~~a~l~~g~~vv 104 (405)
T 4ina_A 90 LTIMEACLRTGVPYL 104 (405)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHhCCCEE
Confidence 455666666665543
No 421
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=21.90 E-value=2.1e+02 Score=23.27 Aligned_cols=23 Identities=4% Similarity=0.004 Sum_probs=12.1
Q ss_pred HHHHHHhhhcCCceEEEEecCCC
Q 020548 52 HEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
.+++.+.+++...+.|++.+|+.
T Consensus 139 ~~~~~~~~~~~gl~~I~lvap~t 161 (271)
T 3nav_A 139 SQPFVAAAEKFGIQPIFIAPPTA 161 (271)
T ss_dssp CHHHHHHHHHTTCEEEEEECTTC
T ss_pred HHHHHHHHHHcCCeEEEEECCCC
Confidence 34444444445566666665544
No 422
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.82 E-value=67 Score=26.60 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccc-cChHHHHHHHHhcCCEEEEcC
Q 020548 23 TLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDN 100 (324)
Q Consensus 23 p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~i~~l~~~~~~~~ivD~ 100 (324)
|.|.+..+..... . ..+-+.+++.. -.+.+++++ +.+++.+++-+ +|.. .+.+++.+.|+++|+.++-.+
T Consensus 57 ~vy~sl~el~~~~--~-~Dv~ii~vp~~~~~~~v~ea~-~~Gi~~vVi~t----~G~~~~~~~~l~~~A~~~gi~viGPN 128 (294)
T 2yv1_A 57 PVFDTVKEAVKET--D-ANASVIFVPAPFAKDAVFEAI-DAGIELIVVIT----EHIPVHDTMEFVNYAEDVGVKIIGPN 128 (294)
T ss_dssp EEESSHHHHHHHH--C-CCEEEECCCHHHHHHHHHHHH-HTTCSEEEECC----SCCCHHHHHHHHHHHHHHTCEEECSS
T ss_pred eeeCCHHHHhhcC--C-CCEEEEccCHHHHHHHHHHHH-HCCCCEEEEEC----CCCCHHHHHHHHHHHHHcCCEEEcCC
Confidence 4455555444211 1 23444444432 345555566 56778555432 2332 346799999999999888777
Q ss_pred CCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 101 TFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 101 ~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
+. ++. +| + .....++.-.. ...+++ |++.-+-.+...+.
T Consensus 129 c~-Gii-~~---~-~~~~~~~~~~~-~~~G~v-a~vSqSG~l~~~~~ 167 (294)
T 2yv1_A 129 TP-GIA-SP---K-VGKLGIIPMEV-LKEGSV-GMVSRSGTLTYEIA 167 (294)
T ss_dssp CC-EEE-ET---T-TEEEECCCGGG-CCEEEE-EEEESCSHHHHHHH
T ss_pred Cc-eee-cc---C-cceeeecccCC-CCCCCE-EEEECCHHHHHHHH
Confidence 64 221 12 1 12223332222 223455 88876665554443
No 423
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=21.51 E-value=1.6e+02 Score=23.63 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=37.2
Q ss_pred chhHHHHHhhhcCcccceeEEEe-cC-CCHHH----HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE-
Q 020548 25 YGGTHALLTHFFPRACNITTTFV-DI-SDHEM----VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV- 97 (324)
Q Consensus 25 y~~~~~~~~~~~~~~~g~~~~~~-~~-~d~~~----l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i- 97 (324)
|......++..+.+ .|..+... +. .|.+. ++..+ ..+++.|++...... ...+..+.+++.|+++|
T Consensus 19 ~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPvV~ 91 (305)
T 3g1w_A 19 WKRCLKGFEDAAQA-LNVTVEYRGAAQYDIQEQITVLEQAI-AKNPAGIAISAIDPV-----ELTDTINKAVDAGIPIVL 91 (305)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEEECSSSCHHHHHHHHHHHH-HHCCSEEEECCSSTT-----TTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHH-cCCEEEEeCCCcCCHHHHHHHHHHHH-HhCCCEEEEcCCCHH-----HHHHHHHHHHHCCCcEEE
Confidence 34444444444445 68887763 32 35443 33334 567888887643221 23445566666787655
Q ss_pred EcC
Q 020548 98 VDN 100 (324)
Q Consensus 98 vD~ 100 (324)
+|.
T Consensus 92 ~~~ 94 (305)
T 3g1w_A 92 FDS 94 (305)
T ss_dssp ESS
T ss_pred ECC
Confidence 554
No 424
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=21.48 E-value=3.2e+02 Score=22.56 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=8.5
Q ss_pred HHHHHhhhcCCceEEEEec
Q 020548 53 EMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 53 ~~l~~~l~~~~~~~v~~~~ 71 (324)
+.++++.++++++.|=+++
T Consensus 158 ~al~~l~~~Gkir~iGvSn 176 (310)
T 3b3e_A 158 RALEKLYKDGKIRAIGVSN 176 (310)
T ss_dssp HHHHHHHHTTSEEEEEEES
T ss_pred HHHHHHHHcCCcceEeecC
Confidence 3344433334555554443
No 425
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=21.26 E-value=2.1e+02 Score=25.61 Aligned_cols=57 Identities=11% Similarity=0.002 Sum_probs=38.3
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEe
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~ 70 (324)
+++||+|.+..+.-..+...+-... + .|..+..++.. ..+.+...+++-++++++.+
T Consensus 69 v~~gd~V~i~~~n~~e~~~~~lA~~-~-~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 126 (541)
T 1v25_A 69 VGVGDRVATLGFNHFRHLEAYFAVP-G-MGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 126 (541)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHH-H-TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHH-h-cCcEEEecCcccCHHHHHHHHHhCCCcEEEEC
Confidence 6789999888766555444432222 3 67777777654 67788888855677888765
No 426
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=21.15 E-value=43 Score=31.46 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=22.8
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
..+++++++.||++|+-||+|-++-+.
T Consensus 241 ~~d~~~lv~~~H~~Gi~VilD~V~NH~ 267 (657)
T 2wsk_A 241 LDEFRDAIKALHKAGIEVILDIVLNHS 267 (657)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeeccc
Confidence 467889999999999999999997433
No 427
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.03 E-value=1e+02 Score=25.66 Aligned_cols=66 Identities=11% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHhhhcCcccceeEEEecCC-CH----HHHHHhhhc-CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE-EcC
Q 020548 28 THALLTHFFPRACNITTTFVDIS-DH----EMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV-VDN 100 (324)
Q Consensus 28 ~~~~~~~~~~~~~g~~~~~~~~~-d~----~~l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i-vD~ 100 (324)
....++..+.. .|..+...+.. |. +.++..+.. .++..|++.+ .. ....++.+.+++.|+++| +|.
T Consensus 22 ~~~g~~~~a~~-~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~-----~~~~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 22 YSQFMQAAARD-LGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQ-----YVAPQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHHHHHH-HTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CS-----SHHHHHHHHHTTSCCEEEEEES
T ss_pred HHHHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-ch-----hhHHHHHHHHHhCCCcEEEEcC
Confidence 33334444444 68887666543 33 445566622 5888888863 21 123566777888888766 454
No 428
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=21.02 E-value=1.6e+02 Score=21.17 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=26.3
Q ss_pred HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 55 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 55 l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
++++. +..++.+++.. |. .-+++.++|+++|+.++-+++.
T Consensus 94 v~~~~-~~gi~~i~~~~-----g~--~~~~l~~~a~~~Gi~vvGpnc~ 133 (144)
T 2d59_A 94 VEQAI-KKGAKVVWFQY-----NT--YNREASKKADEAGLIIVANRCM 133 (144)
T ss_dssp HHHHH-HHTCSEEEECT-----TC--CCHHHHHHHHHTTCEEEESCCH
T ss_pred HHHHH-HcCCCEEEECC-----Cc--hHHHHHHHHHHcCCEEEcCCch
Confidence 33344 44566666542 22 2589999999999998877763
No 429
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.90 E-value=76 Score=25.05 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=34.8
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
...|.++++..|.-..-.. -.....+ .|.+..-++..+.+++.+.+ ..+...|.+.=.+.-+-. -++.+.+++ .
T Consensus 53 ~~~g~kvli~kp~~D~R~~-~~~I~Sr-~G~~~~a~~v~~~~di~~~i-~~~~dvV~IDEaQFf~~~--~v~~l~~la-~ 126 (219)
T 3e2i_A 53 IYAKQKVVVFKPAIDDRYH-KEKVVSH-NGNAIEAINISKASEIMTHD-LTNVDVIGIDEVQFFDDE--IVSIVEKLS-A 126 (219)
T ss_dssp HHTTCCEEEEEEC------------CB-TTBCCEEEEESSGGGGGGSC-CTTCSEEEECCGGGSCTH--HHHHHHHHH-H
T ss_pred HHcCCceEEEEeccCCcch-hhhHHHh-cCCceeeEEeCCHHHHHHHH-hcCCCEEEEechhcCCHH--HHHHHHHHH-H
Confidence 3345566666554432111 0011223 45444444334445554444 445566666544443311 123444445 4
Q ss_pred cCCEEEEc
Q 020548 92 KGVTVVVD 99 (324)
Q Consensus 92 ~~~~~ivD 99 (324)
.|+.|++=
T Consensus 127 ~gi~Vi~~ 134 (219)
T 3e2i_A 127 DGHRVIVA 134 (219)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEe
Confidence 57777754
No 430
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=20.70 E-value=1.4e+02 Score=24.82 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=14.9
Q ss_pred CHHHHHHhh-----hcCCceEEEEecCCCC
Q 020548 51 DHEMVNSAI-----VQGRTKVLYFESISNP 75 (324)
Q Consensus 51 d~~~l~~~l-----~~~~~~~v~~~~~~np 75 (324)
|.+++.+.+ +++++.+|++++|++.
T Consensus 55 ~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~ 84 (312)
T 3o9z_A 55 EPEAFEAYLEDLRDRGEGVDYLSIASPNHL 84 (312)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEEECSCGGG
T ss_pred CHHHHHHHhhhhcccCCCCcEEEECCCchh
Confidence 566655332 3567777777776553
No 431
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=20.52 E-value=2.1e+02 Score=20.47 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=31.2
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-..+..+++++.+.++|++..--.|. .-...+..+|+++|++++.
T Consensus 36 G~~~v~kai~~gkakLViiA~D~~p~---~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 36 GANEATKTLNRGISEFIIMAADCEPI---EILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp SHHHHHHHHHHTCEEEEEEETTCSSG---GGGTHHHHHHHHHTCCEEE
T ss_pred CchHHHHHHHhCCCeEEEEeCCCCHH---HHHHHHHHHHHhcCCCEEE
Confidence 45677777767889999987533331 1245777999999988654
No 432
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=20.51 E-value=53 Score=23.30 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.5
Q ss_pred hHHHHHHHHhcCCEEEEcCC
Q 020548 82 IPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~ 101 (324)
-..|.++|+++|++++.|..
T Consensus 73 A~~I~~~A~e~~VPi~e~~~ 92 (123)
T 2jli_A 73 VQTVRKIAEEEGVPILQRIP 92 (123)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 45899999999999999964
No 433
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=20.49 E-value=1.6e+02 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHHhhhcCCceEEEEecCCCCcccc-cChHHHHHHHHhcCCEEE
Q 020548 52 HEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVV 97 (324)
Q Consensus 52 ~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~i~~l~~~~~~~~i 97 (324)
++.++.+. +.+.+.++++ |.|.+ .+-+++.+.|+++|+.++
T Consensus 234 ~dti~~~~-~ag~~~ivi~----~g~si~~~~~~~i~~a~~~gi~~~ 275 (283)
T 4ggi_A 234 VATIHRAA-RAGLAGIVGE----AGRLLVVDREAVIAAADDLGLFVL 275 (283)
T ss_dssp HHHHHHHH-HTTCCEEEEE----TTBCEETTHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHH-HcCCeEEEEc----CCCcEEeCHHHHHHHHHHcCCEEE
Confidence 47777777 7788888777 45665 578999999999998877
No 434
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=20.48 E-value=57 Score=27.15 Aligned_cols=71 Identities=10% Similarity=0.215 Sum_probs=41.8
Q ss_pred EEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----cCCCCcEEE-e
Q 020548 45 TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----ARLGADVVV-H 119 (324)
Q Consensus 45 ~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~~~~~d~~~-~ 119 (324)
+.+..++++++++++ ......|.+.+.+ ..+++++++..+. .+.+- +-++...+. .+.|+|++. +
T Consensus 210 IeVEv~tl~e~~eAl-~aGaDiImLDn~s-----~~~l~~av~~~~~-~v~le---aSGGIt~~~i~~~A~tGVD~IsvG 279 (300)
T 3l0g_A 210 IAIECDNISQVEESL-SNNVDMILLDNMS-----ISEIKKAVDIVNG-KSVLE---VSGCVNIRNVRNIALTGVDYISIG 279 (300)
T ss_dssp EEEEESSHHHHHHHH-HTTCSEEEEESCC-----HHHHHHHHHHHTT-SSEEE---EESSCCTTTHHHHHTTTCSEEECG
T ss_pred EEEEECCHHHHHHHH-HcCCCEEEECCCC-----HHHHHHHHHhhcC-ceEEE---EECCCCHHHHHHHHHcCCCEEEeC
Confidence 445556899999999 7788999998742 1345555555543 23322 224444322 244888665 5
Q ss_pred CCcccc
Q 020548 120 SISKFI 125 (324)
Q Consensus 120 S~sK~~ 125 (324)
+++++.
T Consensus 280 althsa 285 (300)
T 3l0g_A 280 CITNSF 285 (300)
T ss_dssp GGTSSC
T ss_pred ccccCC
Confidence 556543
No 435
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=20.38 E-value=43 Score=32.07 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.4
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||+|-++.+.
T Consensus 251 ~df~~lv~~~H~~Gi~VilD~V~NH~ 276 (755)
T 3aml_A 251 EDLKYLVDKAHSLGLRVLMDVVHSHA 276 (755)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSCB
T ss_pred HHHHHHHHHHHHCCCEEEEEEecccc
Confidence 46889999999999999999998444
No 436
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=20.28 E-value=1.5e+02 Score=25.35 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=31.5
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEc
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 99 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD 99 (324)
+++++++.++.....+|.+.. +..|-+.+..+++++|+++|+.+.+=
T Consensus 247 ~~~~~~~~i~~~~~d~v~ik~--~~~GGit~~~~i~~~A~~~g~~~~~~ 293 (382)
T 2gdq_A 247 GPAQYVPLLSQRCLDIIQPDV--MHVNGIDEFRDCLQLARYFGVRASAH 293 (382)
T ss_dssp SHHHHHHHHHTTCCSEECCCT--TTTTHHHHHHHHHHHHHHHTCEECCC
T ss_pred CHHHHHHHHHcCCCCEEecCc--cccCCHHHHHHHHHHHHHcCCEEeec
Confidence 566666666344455554432 45667777788999999999887665
No 437
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=20.27 E-value=45 Score=31.13 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=36.4
Q ss_pred CHHHHHHhh---hc-CCceEEEEecC----CC-------------CcccccChHHHHHHHHhcC--C--EEEEcCCCCc
Q 020548 51 DHEMVNSAI---VQ-GRTKVLYFESI----SN-------------PTLAVANIPELSRLAHDKG--V--TVVVDNTFSP 104 (324)
Q Consensus 51 d~~~l~~~l---~~-~~~~~v~~~~~----~n-------------ptG~~~~~~~i~~l~~~~~--~--~~ivD~~~~~ 104 (324)
|+..+.+.| ++ -.+.+|.+.++ +| ..|...+++++++.||++| + -||+|-|+-+
T Consensus 189 ~~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH 267 (637)
T 1ji1_A 189 DLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNH 267 (637)
T ss_dssp CHHHHHHTHHHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSB
T ss_pred CHHHHHHhHHHHHhccCCCEEEECCCccCCCCCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEECccc
Confidence 555555543 23 46778877652 11 1233346889999999999 9 9999999843
No 438
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=20.22 E-value=3.4e+02 Score=21.75 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=35.7
Q ss_pred cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC-CEEEE
Q 020548 40 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVV 98 (324)
Q Consensus 40 ~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~-~~~iv 98 (324)
.|+++...|..|.+.+.+++ + ++..|+...... .......+.+.|++.| +--++
T Consensus 56 ~~v~~v~~D~~d~~~l~~~~-~-~~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 56 SGANIVHGSIDDHASLVEAV-K-NVDVVISTVGSL---QIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp TTCEEECCCTTCHHHHHHHH-H-TCSEEEECCCGG---GSGGGHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEEeccCCHHHHHHHH-c-CCCEEEECCcch---hhhhHHHHHHHHHhcCCCceEe
Confidence 47788888888999999998 4 356666543211 1233467888888877 54333
No 439
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=20.19 E-value=44 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.343 Sum_probs=22.2
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPL 105 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~ 105 (324)
.+++++++.||++|+-||.|-++.++
T Consensus 313 ~dfk~lV~~~H~~GI~VilD~V~NH~ 338 (722)
T 3k1d_A 313 DDFRALVDALHQAGIGVIVDWVPAHF 338 (722)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHcCCEEEEEEEeecc
Confidence 35789999999999999999997544
No 440
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=20.16 E-value=58 Score=30.68 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=35.5
Q ss_pred CHHHHHHhh---hcCCceEEEEecCCC-----------------CcccccChHHHHHHHHhcCCEEEEcCCC
Q 020548 51 DHEMVNSAI---VQGRTKVLYFESISN-----------------PTLAVANIPELSRLAHDKGVTVVVDNTF 102 (324)
Q Consensus 51 d~~~l~~~l---~~~~~~~v~~~~~~n-----------------ptG~~~~~~~i~~l~~~~~~~~ivD~~~ 102 (324)
|+..+.+.+ ++-.+.+|+++++.. ..|...+++++++.||++|+-||+|-+.
T Consensus 58 ~~~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~gi~vi~D~V~ 129 (669)
T 3k8k_A 58 DLNGVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVM 129 (669)
T ss_dssp CHHHHHTTHHHHHTTTCSEEEECCCSSBSSTTCCSBSCTTSCCTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccccccccCCHHHHHHHHHHHHHcCCEEEEEECc
Confidence 566665544 234678888875321 1123345889999999999999999886
No 441
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.15 E-value=1.5e+02 Score=23.69 Aligned_cols=65 Identities=8% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHHhhhcCcccceeEEEecCC-CHH----HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE-EcC
Q 020548 29 HALLTHFFPRACNITTTFVDIS-DHE----MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV-VDN 100 (324)
Q Consensus 29 ~~~~~~~~~~~~g~~~~~~~~~-d~~----~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i-vD~ 100 (324)
...++..+.+ .|..+...+.. +.+ .++..+ ..++..|++..... ....+..+.+++.|+++| +|.
T Consensus 27 ~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~-----~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 27 INAFKAEAKA-NKYEALVATSQNSRISEREQILEFV-HLKVDAIFITTLDD-----VYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHH-TTCEEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCT-----TTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHH-cCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCCh-----HHHHHHHHHHHHcCCCEEEecC
Confidence 3334444444 68887776554 443 344444 57888888864322 123455666667787655 454
No 442
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.08 E-value=1.7e+02 Score=23.56 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=38.2
Q ss_pred CCchhHHHHHhhhcCcccceeEEEecCCC-HH---HHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEE-
Q 020548 23 TLYGGTHALLTHFFPRACNITTTFVDISD-HE---MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV- 97 (324)
Q Consensus 23 p~y~~~~~~~~~~~~~~~g~~~~~~~~~d-~~---~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~i- 97 (324)
|.|......++..+.+ .|..+......+ .+ .+.+.+...+++.|++...... .+..+.+++.++++|
T Consensus 25 ~f~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-------~~~~~~l~~~~iPvV~ 96 (295)
T 3hcw_A 25 PFYINVLLGISETCNQ-HGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-------DPIKQMLIDESMPFIV 96 (295)
T ss_dssp HHHHHHHHHHHHHHHT-TTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-------CHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHHHHHH-CCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-------hHHHHHHHhCCCCEEE
Confidence 3444444445555555 688887765542 22 2223333678888888643221 244555666676654
Q ss_pred EcC
Q 020548 98 VDN 100 (324)
Q Consensus 98 vD~ 100 (324)
+|.
T Consensus 97 i~~ 99 (295)
T 3hcw_A 97 IGK 99 (295)
T ss_dssp ESC
T ss_pred ECC
Confidence 554
No 443
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.07 E-value=86 Score=26.37 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=25.5
Q ss_pred cCCceEEEEecCCCCccc---------------------ccChHHHHHHHHhcCCEEEEcCC
Q 020548 61 QGRTKVLYFESISNPTLA---------------------VANIPELSRLAHDKGVTVVVDNT 101 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~---------------------~~~~~~i~~l~~~~~~~~ivD~~ 101 (324)
++++.+|++++|++-.-. ..+.++|.++|++.|..+.+.-.
T Consensus 84 ~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~ 145 (350)
T 4had_A 84 SDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYM 145 (350)
T ss_dssp CSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCG
T ss_pred CCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeee
Confidence 556777777666543321 12456777778887877776644
No 444
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=20.01 E-value=2.1e+02 Score=19.83 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=31.2
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEE
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 98 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~iv 98 (324)
-.++..+++++.+.++|++.+--.|... ...+..+|++++++++.
T Consensus 33 G~~~v~kai~~gka~lViiA~D~~p~~~---~~~l~~lc~~~~VP~~~ 77 (120)
T 1xbi_A 33 GANEVTKAVERGIAKLVIIAEDVKPEEV---VAHLPYLCEEKGIPYAY 77 (120)
T ss_dssp SHHHHHHHHHHTCCSEEEEESCCSSGGG---TTTHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHcCCceEEEEcCCCChHHH---HHHHHHHHHhcCCCEEE
Confidence 4667777776778899998764444322 35677889999987553
Done!