Query 020549
Match_columns 324
No_of_seqs 274 out of 2831
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1532 GTPase XAB1, interacts 100.0 7.7E-43 1.7E-47 296.2 22.0 257 66-322 16-273 (366)
2 PF03029 ATP_bind_1: Conserved 100.0 1.7E-33 3.6E-38 245.4 14.3 234 74-312 1-236 (238)
3 COG1159 Era GTPase [General fu 100.0 3.2E-29 7E-34 217.8 14.3 174 68-322 5-181 (298)
4 PRK13768 GTPase; Provisional 99.9 1.1E-25 2.4E-30 198.6 21.5 243 69-313 2-247 (253)
5 KOG1533 Predicted GTPase [Gene 99.9 5.5E-25 1.2E-29 183.7 14.2 238 70-310 3-250 (290)
6 TIGR00436 era GTP-binding prot 99.9 9.5E-25 2E-29 195.1 14.4 170 71-322 2-173 (270)
7 KOG1534 Putative transcription 99.9 1.4E-24 3E-29 178.4 13.4 243 70-315 4-253 (273)
8 PRK15494 era GTPase Era; Provi 99.9 5.8E-24 1.3E-28 195.4 13.4 175 67-323 50-226 (339)
9 PF02421 FeoB_N: Ferrous iron 99.9 3.6E-24 7.8E-29 173.4 9.7 156 70-308 1-156 (156)
10 PRK00089 era GTPase Era; Revie 99.9 4.5E-23 9.9E-28 186.5 14.4 174 68-322 4-180 (292)
11 COG1160 Predicted GTPases [Gen 99.9 2.1E-22 4.5E-27 184.6 14.5 206 24-315 143-353 (444)
12 COG1160 Predicted GTPases [Gen 99.9 1.9E-22 4E-27 185.0 14.0 160 70-313 4-165 (444)
13 KOG0084 GTPase Rab1/YPT1, smal 99.9 1.8E-22 3.9E-27 164.6 10.8 167 67-315 7-174 (205)
14 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 3.4E-22 7.4E-27 162.4 11.1 166 68-315 21-187 (221)
15 PRK12298 obgE GTPase CgtA; Rev 99.9 1.9E-21 4.2E-26 181.0 17.7 176 71-322 161-342 (390)
16 KOG0394 Ras-related GTPase [Ge 99.9 2E-22 4.3E-27 162.2 8.5 173 66-314 6-179 (210)
17 COG0486 ThdF Predicted GTPase 99.9 2.1E-21 4.5E-26 178.6 13.5 165 64-315 212-378 (454)
18 KOG0078 GTP-binding protein SE 99.9 3.3E-21 7.1E-26 159.5 13.2 167 66-314 9-175 (207)
19 KOG0092 GTPase Rab5/YPT51 and 99.9 3.1E-22 6.7E-27 162.6 6.3 166 68-315 4-169 (200)
20 PF00009 GTP_EFTU: Elongation 99.9 4.4E-21 9.4E-26 162.5 12.5 117 164-313 68-187 (188)
21 PRK12299 obgE GTPase CgtA; Rev 99.9 3.2E-20 6.9E-25 169.7 17.9 168 70-316 159-331 (335)
22 cd04171 SelB SelB subfamily. 99.9 2.7E-20 5.8E-25 153.3 15.6 113 165-310 50-163 (164)
23 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.8E-21 1E-25 157.4 11.0 158 70-312 2-161 (162)
24 cd01897 NOG NOG1 is a nucleola 99.8 2.9E-20 6.3E-25 154.1 15.2 163 70-312 1-167 (168)
25 cd04140 ARHI_like ARHI subfami 99.8 5.8E-21 1.3E-25 158.1 10.5 160 70-311 2-163 (165)
26 cd04112 Rab26 Rab26 subfamily. 99.8 1.5E-20 3.3E-25 159.5 13.3 169 70-321 1-171 (191)
27 PRK03003 GTP-binding protein D 99.8 2.5E-20 5.4E-25 179.0 16.0 171 68-315 210-384 (472)
28 smart00173 RAS Ras subfamily o 99.8 1E-20 2.2E-25 156.2 11.5 160 70-313 1-162 (164)
29 cd04136 Rap_like Rap-like subf 99.8 5.9E-21 1.3E-25 157.3 10.1 159 70-312 2-162 (163)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.3E-20 2.8E-25 157.3 12.2 161 70-314 3-165 (172)
31 cd04120 Rab12 Rab12 subfamily. 99.8 1.1E-20 2.3E-25 161.4 11.5 161 71-314 2-164 (202)
32 cd01898 Obg Obg subfamily. Th 99.8 3.6E-20 7.8E-25 153.7 14.2 119 166-311 48-169 (170)
33 KOG0098 GTPase Rab2, small G p 99.8 2.2E-20 4.8E-25 150.7 11.8 165 68-314 5-169 (216)
34 KOG1423 Ras-like GTPase ERA [C 99.8 1.5E-20 3.3E-25 162.9 11.7 200 66-324 69-282 (379)
35 cd01865 Rab3 Rab3 subfamily. 99.8 3.5E-20 7.6E-25 153.4 13.4 163 70-314 2-164 (165)
36 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 2E-20 4.4E-25 155.8 11.8 163 71-314 2-166 (170)
37 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.5E-19 3.3E-24 156.7 17.6 217 71-310 1-220 (224)
38 cd04116 Rab9 Rab9 subfamily. 99.8 1.2E-20 2.6E-25 156.8 10.2 163 68-311 4-169 (170)
39 cd04175 Rap1 Rap1 subgroup. T 99.8 1.3E-20 2.8E-25 155.7 10.3 159 70-312 2-162 (164)
40 TIGR03594 GTPase_EngA ribosome 99.8 6.4E-20 1.4E-24 174.7 16.1 172 67-314 170-345 (429)
41 TIGR02729 Obg_CgtA Obg family 99.8 1.1E-19 2.5E-24 165.8 17.1 166 70-312 158-328 (329)
42 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.3E-20 5.1E-25 153.8 11.4 159 70-312 3-163 (164)
43 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.9E-20 6.2E-25 159.1 11.8 168 70-316 1-171 (201)
44 PRK12296 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.8E-24 171.7 17.3 170 69-316 159-343 (500)
45 cd01874 Cdc42 Cdc42 subfamily. 99.8 5.7E-20 1.2E-24 153.8 13.1 169 70-311 2-173 (175)
46 cd01867 Rab8_Rab10_Rab13_like 99.8 7.5E-20 1.6E-24 151.7 13.6 163 69-313 3-165 (167)
47 TIGR03156 GTP_HflX GTP-binding 99.8 9E-20 1.9E-24 168.0 15.3 162 68-311 188-350 (351)
48 cd04132 Rho4_like Rho4-like su 99.8 9.7E-20 2.1E-24 153.9 14.1 167 70-318 1-172 (187)
49 cd04144 Ras2 Ras2 subfamily. 99.8 2.6E-20 5.6E-25 158.0 10.5 159 71-314 1-164 (190)
50 cd01889 SelB_euk SelB subfamil 99.8 1.5E-19 3.2E-24 153.6 15.1 119 165-314 67-187 (192)
51 cd01878 HflX HflX subfamily. 99.8 1.9E-19 4.1E-24 154.3 15.9 161 68-311 40-203 (204)
52 cd01875 RhoG RhoG subfamily. 99.8 4E-20 8.7E-25 156.9 11.2 173 69-314 3-178 (191)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.1E-19 2.4E-24 150.4 13.5 160 70-313 3-164 (166)
54 PRK04213 GTP-binding protein; 99.8 1.8E-19 4E-24 154.0 15.2 173 68-316 8-195 (201)
55 KOG0087 GTPase Rab11/YPT3, sma 99.8 1.5E-20 3.2E-25 155.0 7.9 166 66-313 11-176 (222)
56 cd04124 RabL2 RabL2 subfamily. 99.8 2.4E-19 5.2E-24 147.9 15.2 158 70-315 1-160 (161)
57 cd00157 Rho Rho (Ras homology) 99.8 6E-20 1.3E-24 152.5 11.7 170 70-310 1-170 (171)
58 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.9E-20 1.3E-24 152.1 11.6 117 165-310 49-166 (167)
59 cd04135 Tc10 TC10 subfamily. 99.8 6.9E-20 1.5E-24 152.7 12.1 170 70-312 1-173 (174)
60 cd01871 Rac1_like Rac1-like su 99.8 7.7E-20 1.7E-24 152.9 12.4 169 70-311 2-173 (174)
61 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.5E-19 3.2E-24 152.1 13.9 170 68-312 4-179 (182)
62 cd04142 RRP22 RRP22 subfamily. 99.8 5.7E-20 1.2E-24 156.8 11.4 167 70-313 1-174 (198)
63 cd04119 RJL RJL (RabJ-Like) su 99.8 1.2E-19 2.6E-24 149.9 12.8 161 70-313 1-167 (168)
64 smart00174 RHO Rho (Ras homolo 99.8 8.6E-20 1.9E-24 152.2 12.0 168 72-312 1-171 (174)
65 cd04121 Rab40 Rab40 subfamily. 99.8 6.5E-20 1.4E-24 155.1 11.3 162 68-314 5-168 (189)
66 cd04134 Rho3 Rho3 subfamily. 99.8 7.6E-20 1.7E-24 155.0 11.8 171 71-314 2-175 (189)
67 cd00881 GTP_translation_factor 99.8 1.3E-19 2.9E-24 152.6 13.2 185 72-313 2-187 (189)
68 cd01888 eIF2_gamma eIF2-gamma 99.8 3.4E-19 7.3E-24 152.7 15.8 116 166-315 83-201 (203)
69 cd04133 Rop_like Rop subfamily 99.8 3.9E-20 8.4E-25 154.8 9.7 165 70-312 2-172 (176)
70 cd00877 Ran Ran (Ras-related n 99.8 5.3E-20 1.1E-24 152.7 10.3 160 70-314 1-160 (166)
71 cd01864 Rab19 Rab19 subfamily. 99.8 6.1E-20 1.3E-24 151.9 10.7 160 69-311 3-164 (165)
72 cd04122 Rab14 Rab14 subfamily. 99.8 7.2E-20 1.6E-24 151.6 11.0 159 70-312 3-163 (166)
73 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.1E-19 4.6E-24 151.5 13.9 167 68-314 2-171 (183)
74 cd04176 Rap2 Rap2 subgroup. T 99.8 4.9E-20 1.1E-24 152.0 9.7 159 70-312 2-162 (163)
75 cd04149 Arf6 Arf6 subfamily. 99.8 1.1E-19 2.4E-24 151.1 11.8 159 68-310 8-167 (168)
76 PRK12297 obgE GTPase CgtA; Rev 99.8 2.9E-19 6.4E-24 167.3 15.9 167 71-317 160-331 (424)
77 cd04163 Era Era subfamily. Er 99.8 3.2E-19 6.8E-24 146.7 14.3 162 69-311 3-167 (168)
78 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.2E-19 2.7E-24 149.7 11.8 111 165-312 51-163 (164)
79 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4E-19 8.6E-24 147.1 14.8 118 165-313 49-166 (168)
80 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 3.7E-19 8E-24 154.7 14.9 172 68-314 12-189 (232)
81 cd01879 FeoB Ferrous iron tran 99.8 2.1E-19 4.5E-24 147.1 12.6 115 165-312 42-156 (158)
82 cd01866 Rab2 Rab2 subfamily. 99.8 3E-19 6.6E-24 148.3 13.6 161 69-313 4-166 (168)
83 cd04109 Rab28 Rab28 subfamily. 99.8 7.5E-20 1.6E-24 158.2 10.3 165 70-314 1-167 (215)
84 cd04139 RalA_RalB RalA/RalB su 99.8 1.2E-19 2.6E-24 149.4 11.0 160 70-313 1-162 (164)
85 PTZ00369 Ras-like protein; Pro 99.8 1.2E-19 2.6E-24 153.8 11.2 162 69-314 5-168 (189)
86 cd04131 Rnd Rnd subfamily. Th 99.8 2.9E-19 6.2E-24 149.9 13.1 169 70-311 2-174 (178)
87 cd04106 Rab23_lke Rab23-like s 99.8 1.1E-19 2.3E-24 149.7 10.2 158 70-310 1-160 (162)
88 cd04158 ARD1 ARD1 subfamily. 99.8 1.5E-19 3.2E-24 150.4 11.0 121 165-318 42-166 (169)
89 cd01893 Miro1 Miro1 subfamily. 99.8 6.4E-19 1.4E-23 146.0 14.8 159 71-312 2-163 (166)
90 KOG0080 GTPase Rab18, small G 99.8 3.7E-20 8.1E-25 145.6 6.9 167 68-315 10-176 (209)
91 cd01895 EngA2 EngA2 subfamily. 99.8 9.6E-19 2.1E-23 145.0 15.9 167 69-311 2-173 (174)
92 cd01890 LepA LepA subfamily. 99.8 4.6E-19 9.9E-24 148.5 13.9 112 165-313 66-177 (179)
93 cd04154 Arl2 Arl2 subfamily. 99.8 2.5E-19 5.3E-24 149.5 12.2 159 67-310 12-172 (173)
94 cd01894 EngA1 EngA1 subfamily. 99.8 2.7E-19 5.8E-24 146.1 12.2 111 165-311 44-156 (157)
95 PRK00093 GTP-binding protein D 99.8 4.5E-19 9.7E-24 169.2 15.5 172 67-314 171-345 (435)
96 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.4E-19 3.1E-24 152.3 10.7 162 70-314 1-167 (182)
97 PLN03071 GTP-binding nuclear p 99.8 1.7E-19 3.8E-24 156.2 11.2 161 67-314 11-173 (219)
98 cd04113 Rab4 Rab4 subfamily. 99.8 3.5E-19 7.6E-24 146.6 12.5 158 70-311 1-160 (161)
99 cd04127 Rab27A Rab27a subfamil 99.8 2.3E-19 5.1E-24 150.4 11.6 171 69-313 4-177 (180)
100 KOG0095 GTPase Rab30, small G 99.8 3.4E-19 7.3E-24 138.5 11.2 163 68-313 6-169 (213)
101 cd01868 Rab11_like Rab11-like. 99.8 1.7E-19 3.7E-24 149.0 10.3 159 70-312 4-164 (165)
102 TIGR03598 GTPase_YsxC ribosome 99.8 1.2E-18 2.5E-23 146.4 15.4 161 65-302 14-179 (179)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.8 5E-19 1.1E-23 145.8 12.8 114 165-310 43-158 (159)
104 cd04151 Arl1 Arl1 subfamily. 99.8 3.9E-19 8.4E-24 146.0 12.2 114 165-310 42-157 (158)
105 cd04177 RSR1 RSR1 subgroup. R 99.8 2.3E-19 4.9E-24 149.0 10.8 160 70-312 2-163 (168)
106 TIGR02528 EutP ethanolamine ut 99.8 7.2E-19 1.6E-23 141.7 13.5 103 169-309 38-141 (142)
107 cd04157 Arl6 Arl6 subfamily. 99.8 2.3E-19 4.9E-24 147.6 10.6 115 165-310 44-161 (162)
108 cd04126 Rab20 Rab20 subfamily. 99.8 4.5E-19 9.8E-24 153.2 12.9 184 70-317 1-194 (220)
109 cd01862 Rab7 Rab7 subfamily. 99.8 5.2E-19 1.1E-23 146.9 12.8 164 70-315 1-169 (172)
110 COG0532 InfB Translation initi 99.8 4.1E-19 8.9E-24 165.6 13.4 176 67-321 3-178 (509)
111 PRK05291 trmE tRNA modificatio 99.8 3.5E-19 7.7E-24 169.5 13.2 157 67-314 213-371 (449)
112 smart00175 RAB Rab subfamily o 99.8 5.7E-19 1.2E-23 145.5 12.8 162 70-314 1-163 (164)
113 cd04147 Ras_dva Ras-dva subfam 99.8 3.5E-19 7.5E-24 152.0 11.8 163 71-315 1-165 (198)
114 cd01870 RhoA_like RhoA-like su 99.8 4.1E-19 8.9E-24 148.2 12.0 170 70-312 2-174 (175)
115 cd01861 Rab6 Rab6 subfamily. 99.8 2E-19 4.3E-24 147.9 9.8 157 71-311 2-160 (161)
116 cd04117 Rab15 Rab15 subfamily. 99.8 2.5E-19 5.4E-24 147.8 10.2 158 70-311 1-160 (161)
117 PLN03118 Rab family protein; P 99.8 1.2E-18 2.5E-23 150.3 14.8 168 66-318 11-182 (211)
118 cd04143 Rhes_like Rhes_like su 99.8 2.3E-19 4.9E-24 157.9 10.2 162 70-312 1-170 (247)
119 cd01860 Rab5_related Rab5-rela 99.8 7.9E-19 1.7E-23 144.6 12.9 159 70-312 2-162 (163)
120 PRK09518 bifunctional cytidyla 99.8 9.9E-19 2.1E-23 175.5 16.0 171 68-315 449-623 (712)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.8 6E-19 1.3E-23 145.0 11.8 114 165-310 43-159 (160)
122 PLN00223 ADP-ribosylation fact 99.8 8.8E-19 1.9E-23 147.4 13.0 160 68-314 16-179 (181)
123 cd04125 RabA_like RabA-like su 99.8 1.3E-18 2.8E-23 147.2 13.9 162 70-314 1-163 (188)
124 TIGR00491 aIF-2 translation in 99.8 2.9E-18 6.3E-23 166.9 18.1 136 166-314 69-217 (590)
125 PRK15467 ethanolamine utilizat 99.8 1.6E-18 3.4E-23 142.6 13.9 108 170-314 41-148 (158)
126 PRK11058 GTPase HflX; Provisio 99.8 1.2E-18 2.7E-23 164.0 15.0 162 69-313 197-362 (426)
127 smart00177 ARF ARF-like small 99.8 1.4E-18 2.9E-23 145.5 13.7 161 68-312 12-173 (175)
128 KOG0079 GTP-binding protein H- 99.8 3E-19 6.5E-24 138.7 8.8 163 70-315 9-171 (198)
129 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.4E-18 3.1E-23 150.2 14.1 171 70-313 2-176 (222)
130 cd01881 Obg_like The Obg-like 99.8 1.7E-18 3.6E-23 144.4 14.1 117 165-311 43-175 (176)
131 cd04114 Rab30 Rab30 subfamily. 99.8 1.3E-18 2.9E-23 144.2 13.4 160 68-312 6-168 (169)
132 PRK03003 GTP-binding protein D 99.8 7.2E-19 1.5E-23 168.9 13.4 162 68-314 37-200 (472)
133 PTZ00133 ADP-ribosylation fact 99.8 1.1E-18 2.5E-23 146.9 13.0 162 67-314 15-179 (182)
134 PLN03110 Rab GTPase; Provision 99.8 5E-19 1.1E-23 153.1 11.1 162 68-314 11-175 (216)
135 cd01863 Rab18 Rab18 subfamily. 99.8 1E-18 2.2E-23 143.7 12.4 158 70-311 1-160 (161)
136 TIGR00487 IF-2 translation ini 99.8 2.2E-18 4.8E-23 167.9 16.7 165 65-310 83-247 (587)
137 KOG0093 GTPase Rab3, small G p 99.8 7.3E-19 1.6E-23 136.4 10.5 168 68-317 20-187 (193)
138 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.1E-18 4.5E-23 146.5 14.4 106 164-301 63-171 (195)
139 cd04118 Rab24 Rab24 subfamily. 99.8 1.6E-18 3.5E-23 147.1 13.7 162 70-314 1-167 (193)
140 KOG0086 GTPase Rab4, small G p 99.8 7E-19 1.5E-23 137.3 10.2 165 67-313 7-171 (214)
141 cd01892 Miro2 Miro2 subfamily. 99.8 1.1E-18 2.4E-23 145.1 12.2 163 67-313 2-166 (169)
142 COG2262 HflX GTPases [General 99.8 1.2E-18 2.7E-23 157.6 13.3 164 67-315 190-358 (411)
143 cd04111 Rab39 Rab39 subfamily. 99.8 8.7E-19 1.9E-23 151.0 11.9 165 70-316 3-169 (211)
144 cd04137 RheB Rheb (Ras Homolog 99.8 1E-18 2.2E-23 146.6 12.0 161 70-314 2-164 (180)
145 PRK00454 engB GTP-binding prot 99.8 6.3E-18 1.4E-22 143.7 16.9 170 66-314 21-195 (196)
146 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.8E-18 3.8E-23 144.6 12.9 158 68-310 14-173 (174)
147 TIGR03594 GTPase_EngA ribosome 99.8 8.9E-19 1.9E-23 166.9 12.5 159 71-314 1-161 (429)
148 smart00178 SAR Sar1p-like memb 99.8 1.4E-18 2.9E-23 146.6 12.2 168 67-311 15-183 (184)
149 PRK05306 infB translation init 99.8 3.3E-18 7.1E-23 170.6 16.5 165 65-311 286-450 (787)
150 cd04123 Rab21 Rab21 subfamily. 99.8 1.9E-18 4.2E-23 141.8 12.5 159 70-312 1-161 (162)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.1E-18 4.6E-23 140.7 12.6 155 69-312 1-156 (157)
152 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.5E-18 3.2E-23 144.9 11.9 168 70-310 1-171 (173)
153 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.3E-18 2.8E-23 142.7 11.3 114 165-310 42-157 (158)
154 TIGR00475 selB selenocysteine- 99.8 2.1E-18 4.5E-23 168.8 14.6 118 165-314 49-167 (581)
155 cd00879 Sar1 Sar1 subfamily. 99.8 1.7E-18 3.7E-23 146.6 12.0 172 67-311 17-189 (190)
156 cd04110 Rab35 Rab35 subfamily. 99.8 1.8E-18 3.8E-23 147.8 12.0 162 68-314 5-168 (199)
157 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.2E-18 2.5E-23 144.3 9.9 155 72-310 2-163 (164)
158 cd04159 Arl10_like Arl10-like 99.8 1.4E-18 2.9E-23 141.8 10.0 156 72-310 2-158 (159)
159 cd04146 RERG_RasL11_like RERG/ 99.8 1E-18 2.3E-23 144.5 9.3 113 165-312 46-163 (165)
160 CHL00189 infB translation init 99.8 3.7E-18 8E-23 168.8 14.7 170 65-312 240-409 (742)
161 KOG0091 GTPase Rab39, small G 99.8 5.5E-18 1.2E-22 133.9 12.5 165 70-314 9-174 (213)
162 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.4E-18 5.3E-23 143.1 11.1 161 69-312 2-168 (170)
163 cd00154 Rab Rab family. Rab G 99.8 5.7E-18 1.2E-22 138.0 12.9 158 70-309 1-158 (159)
164 cd04168 TetM_like Tet(M)-like 99.8 1.4E-17 3E-22 145.7 16.0 135 163-314 61-236 (237)
165 cd04103 Centaurin_gamma Centau 99.8 1.6E-18 3.6E-23 142.5 9.4 151 71-311 2-157 (158)
166 PLN03108 Rab family protein; P 99.8 3.6E-18 7.9E-23 147.1 12.0 163 68-314 5-169 (210)
167 cd04155 Arl3 Arl3 subfamily. 99.8 2.8E-18 6.2E-23 142.8 10.9 159 68-310 13-172 (173)
168 PRK10512 selenocysteinyl-tRNA- 99.8 7.5E-18 1.6E-22 165.4 15.6 117 165-314 50-167 (614)
169 TIGR00450 mnmE_trmE_thdF tRNA 99.8 5.1E-18 1.1E-22 160.7 13.4 160 66-314 200-361 (442)
170 cd04148 RGK RGK subfamily. Th 99.8 2.6E-18 5.5E-23 149.1 10.5 112 165-313 49-163 (221)
171 cd01891 TypA_BipA TypA (tyrosi 99.8 1.3E-17 2.9E-22 141.8 14.6 110 164-303 63-172 (194)
172 KOG1489 Predicted GTP-binding 99.8 1.3E-17 2.7E-22 145.7 14.4 163 70-310 197-364 (366)
173 cd00876 Ras Ras family. The R 99.8 4E-18 8.6E-23 139.6 10.7 157 71-311 1-159 (160)
174 COG0218 Predicted GTPase [Gene 99.8 4.4E-17 9.5E-22 135.0 16.6 172 66-314 21-198 (200)
175 PRK04004 translation initiatio 99.8 3.6E-17 7.7E-22 159.8 18.3 127 167-313 72-218 (586)
176 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.5E-17 3.3E-22 143.0 14.0 108 164-304 75-185 (208)
177 smart00176 RAN Ran (Ras-relate 99.8 3.1E-18 6.8E-23 146.0 9.5 111 165-314 43-155 (200)
178 cd04104 p47_IIGP_like p47 (47- 99.8 5.8E-17 1.3E-21 138.2 17.2 177 69-318 1-189 (197)
179 PRK09554 feoB ferrous iron tra 99.8 1.1E-17 2.5E-22 167.4 14.9 162 69-313 3-168 (772)
180 COG0536 Obg Predicted GTPase [ 99.8 3.3E-17 7.2E-22 144.8 16.0 170 71-316 161-336 (369)
181 PF10662 PduV-EutP: Ethanolami 99.8 1.7E-17 3.8E-22 131.5 12.8 141 70-309 2-142 (143)
182 PRK09518 bifunctional cytidyla 99.8 6.4E-18 1.4E-22 169.6 12.7 161 69-314 275-437 (712)
183 PRK00093 GTP-binding protein D 99.8 1.3E-17 2.8E-22 159.2 14.2 158 70-312 2-161 (435)
184 PRK09435 membrane ATPase/prote 99.7 4.9E-17 1.1E-21 147.6 17.1 201 67-313 54-260 (332)
185 cd04161 Arl2l1_Arl13_like Arl2 99.7 5E-18 1.1E-22 140.9 9.7 118 165-310 42-166 (167)
186 COG0370 FeoB Fe2+ transport sy 99.7 8.9E-18 1.9E-22 160.9 12.4 162 70-314 4-165 (653)
187 cd01873 RhoBTB RhoBTB subfamil 99.7 5.9E-18 1.3E-22 143.9 10.1 123 165-311 65-194 (195)
188 KOG0088 GTPase Rab21, small G 99.7 1.9E-17 4E-22 130.1 11.9 168 66-315 10-177 (218)
189 KOG1145 Mitochondrial translat 99.7 1.7E-17 3.8E-22 153.8 13.8 166 66-313 150-316 (683)
190 PRK09866 hypothetical protein; 99.7 4.4E-17 9.6E-22 155.6 16.2 119 165-311 229-351 (741)
191 cd00880 Era_like Era (E. coli 99.7 3.1E-17 6.8E-22 133.3 13.3 118 165-311 44-162 (163)
192 cd01886 EF-G Elongation factor 99.7 5.2E-17 1.1E-21 144.6 15.6 70 164-246 62-131 (270)
193 cd04129 Rho2 Rho2 subfamily. 99.7 2.4E-17 5.3E-22 139.3 11.7 167 70-313 2-173 (187)
194 PF00071 Ras: Ras family; Int 99.7 5.9E-18 1.3E-22 139.3 7.6 159 71-313 1-161 (162)
195 COG1084 Predicted GTPase [Gene 99.7 1.9E-16 4.1E-21 139.5 17.2 171 68-316 167-339 (346)
196 cd01896 DRG The developmentall 99.7 1.3E-16 2.9E-21 139.3 15.9 50 231-312 176-225 (233)
197 PRK12736 elongation factor Tu; 99.7 7.2E-17 1.6E-21 151.6 14.7 117 165-313 74-201 (394)
198 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-16 3.2E-21 141.6 15.7 71 163-246 68-138 (267)
199 KOG1144 Translation initiation 99.7 1.7E-16 3.7E-21 151.3 16.9 202 67-314 473-688 (1064)
200 TIGR00437 feoB ferrous iron tr 99.7 2.9E-17 6.3E-22 160.9 12.2 115 165-312 40-154 (591)
201 TIGR00231 small_GTP small GTP- 99.7 7.1E-17 1.5E-21 131.0 12.5 53 231-309 108-160 (161)
202 TIGR03680 eif2g_arch translati 99.7 1.1E-16 2.3E-21 151.0 14.8 116 165-313 79-196 (406)
203 cd01876 YihA_EngB The YihA (En 99.7 2.6E-16 5.7E-21 129.5 15.5 119 167-311 46-169 (170)
204 COG1163 DRG Predicted GTPase [ 99.7 1.2E-16 2.6E-21 140.2 13.8 198 32-313 22-289 (365)
205 KOG0083 GTPase Rab26/Rab37, sm 99.7 3.6E-18 7.8E-23 130.4 3.4 162 74-316 2-163 (192)
206 PRK12317 elongation factor 1-a 99.7 1E-16 2.2E-21 152.3 14.0 110 164-305 82-197 (425)
207 PF00025 Arf: ADP-ribosylation 99.7 1.2E-16 2.7E-21 133.6 12.5 162 67-312 12-175 (175)
208 PTZ00132 GTP-binding nuclear p 99.7 8.4E-17 1.8E-21 139.1 11.8 166 67-319 7-174 (215)
209 CHL00071 tufA elongation facto 99.7 1.5E-16 3.2E-21 150.2 14.2 104 165-300 74-180 (409)
210 TIGR01393 lepA GTP-binding pro 99.7 9.9E-17 2.1E-21 157.1 13.2 113 165-314 69-181 (595)
211 COG1703 ArgK Putative periplas 99.7 1.1E-15 2.3E-20 133.4 17.7 202 66-313 48-254 (323)
212 PLN03127 Elongation factor Tu; 99.7 3.2E-16 7E-21 148.7 15.2 117 165-313 123-252 (447)
213 cd04170 EF-G_bact Elongation f 99.7 1.1E-16 2.4E-21 143.0 11.3 70 164-246 62-131 (268)
214 PRK05124 cysN sulfate adenylyl 99.7 9.5E-17 2.1E-21 153.6 11.5 109 164-304 105-216 (474)
215 PRK12735 elongation factor Tu; 99.7 2.7E-16 5.8E-21 147.8 14.1 117 165-313 74-203 (396)
216 PRK04000 translation initiatio 99.7 3E-16 6.5E-21 147.9 14.4 115 166-314 85-202 (411)
217 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-16 2.3E-21 138.8 10.2 107 164-302 75-194 (219)
218 PTZ00327 eukaryotic translatio 99.7 4.5E-16 9.8E-21 147.5 15.2 116 166-314 117-234 (460)
219 KOG0081 GTPase Rab27, small G 99.7 4.6E-17 9.9E-22 128.1 6.8 172 70-314 10-182 (219)
220 COG1100 GTPase SAR1 and relate 99.7 8.9E-16 1.9E-20 132.8 15.0 176 70-314 6-186 (219)
221 PRK05433 GTP-binding protein L 99.7 7.5E-16 1.6E-20 151.1 15.7 113 165-314 73-185 (600)
222 PRK05506 bifunctional sulfate 99.7 1.9E-16 4.1E-21 157.2 11.5 107 164-303 102-211 (632)
223 KOG0097 GTPase Rab14, small G 99.7 2.8E-16 6.1E-21 121.2 9.7 164 68-313 10-173 (215)
224 TIGR02034 CysN sulfate adenyly 99.7 6.8E-16 1.5E-20 145.5 14.5 106 165-303 79-187 (406)
225 PRK00049 elongation factor Tu; 99.7 6.6E-16 1.4E-20 145.1 14.3 117 165-313 74-203 (396)
226 TIGR00101 ureG urease accessor 99.7 1.2E-15 2.5E-20 130.0 14.3 189 69-312 1-195 (199)
227 KOG1191 Mitochondrial GTPase [ 99.7 1.3E-16 2.8E-21 146.8 8.9 175 66-313 265-450 (531)
228 PF03308 ArgK: ArgK protein; 99.7 2.3E-16 4.9E-21 135.9 9.8 202 68-313 28-230 (266)
229 TIGR00485 EF-Tu translation el 99.7 5.6E-16 1.2E-20 145.7 13.4 103 165-299 74-179 (394)
230 TIGR01394 TypA_BipA GTP-bindin 99.7 7.3E-16 1.6E-20 150.8 14.4 122 163-314 61-192 (594)
231 KOG0395 Ras-related GTPase [Ge 99.7 1.9E-16 4.1E-21 134.2 8.8 164 69-314 3-166 (196)
232 cd00882 Ras_like_GTPase Ras-li 99.7 6.2E-16 1.3E-20 124.2 10.6 113 165-309 44-156 (157)
233 KOG4252 GTP-binding protein [S 99.7 2.3E-16 4.9E-21 126.6 7.6 166 66-314 17-182 (246)
234 PLN03126 Elongation factor Tu; 99.7 1.1E-15 2.4E-20 145.9 13.3 104 165-300 143-249 (478)
235 cd04167 Snu114p Snu114p subfam 99.7 2E-15 4.2E-20 130.4 13.6 67 165-244 70-136 (213)
236 TIGR00483 EF-1_alpha translati 99.6 3.5E-15 7.5E-20 141.9 15.7 108 164-303 83-197 (426)
237 PRK00741 prfC peptide chain re 99.6 2.8E-15 6E-20 144.8 14.5 71 164-247 77-147 (526)
238 PRK10218 GTP-binding protein; 99.6 3.6E-15 7.8E-20 145.8 15.3 121 164-314 66-196 (607)
239 TIGR00484 EF-G translation elo 99.6 5.3E-15 1.2E-19 148.2 16.4 71 164-247 73-143 (689)
240 PTZ00141 elongation factor 1- 99.6 1.8E-15 4E-20 143.8 12.2 108 164-303 83-203 (446)
241 cd01899 Ygr210 Ygr210 subfamil 99.6 3.7E-15 8.1E-20 135.2 13.7 60 231-318 214-274 (318)
242 cd01885 EF2 EF2 (for archaea a 99.6 8.7E-15 1.9E-19 126.5 15.3 67 165-244 72-138 (222)
243 PRK10463 hydrogenase nickel in 99.6 1E-14 2.2E-19 129.3 16.0 180 66-311 101-287 (290)
244 KOG0462 Elongation factor-type 99.6 1E-15 2.2E-20 142.2 10.0 179 67-314 58-236 (650)
245 PRK00007 elongation factor G; 99.6 3.3E-15 7.3E-20 149.6 14.5 71 164-247 73-143 (693)
246 TIGR00073 hypB hydrogenase acc 99.6 1E-14 2.2E-19 125.3 15.4 182 68-311 21-205 (207)
247 cd04105 SR_beta Signal recogni 99.6 4.7E-15 1E-19 126.9 12.6 184 71-310 2-202 (203)
248 PRK12739 elongation factor G; 99.6 5.6E-15 1.2E-19 148.0 14.7 70 164-246 71-140 (691)
249 PRK13351 elongation factor G; 99.6 1.4E-14 3.1E-19 145.4 16.3 70 164-246 71-140 (687)
250 COG5257 GCD11 Translation init 99.6 2.2E-15 4.8E-20 131.8 8.0 118 166-315 86-204 (415)
251 TIGR00750 lao LAO/AO transport 99.6 6.9E-14 1.5E-18 126.8 18.1 201 66-313 31-238 (300)
252 TIGR00503 prfC peptide chain r 99.6 2.8E-14 6.1E-19 137.9 15.6 69 164-245 78-146 (527)
253 PRK09602 translation-associate 99.6 2.6E-14 5.6E-19 133.5 14.7 63 231-322 217-280 (396)
254 KOG0393 Ras-related small GTPa 99.6 1.5E-15 3.2E-20 126.4 5.1 176 68-315 3-181 (198)
255 KOG0073 GTP-binding ADP-ribosy 99.6 5.2E-14 1.1E-18 111.7 13.0 164 67-314 14-179 (185)
256 PLN00043 elongation factor 1-a 99.6 1.7E-14 3.8E-19 137.0 12.0 113 164-303 83-203 (447)
257 COG2229 Predicted GTPase [Gene 99.6 1.1E-13 2.4E-18 112.4 14.8 165 67-311 8-176 (187)
258 COG3596 Predicted GTPase [Gene 99.6 7E-14 1.5E-18 120.7 14.4 185 66-314 36-223 (296)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 8.7E-14 1.9E-18 118.5 14.5 140 165-322 48-194 (196)
260 COG2895 CysN GTPases - Sulfate 99.6 8.9E-15 1.9E-19 129.6 8.6 183 67-303 4-193 (431)
261 COG0481 LepA Membrane GTPase L 99.6 1.2E-14 2.7E-19 133.1 9.6 173 70-314 10-187 (603)
262 PF01926 MMR_HSR1: 50S ribosom 99.5 1.2E-14 2.7E-19 113.0 7.6 115 71-240 1-116 (116)
263 cd04102 RabL3 RabL3 (Rab-like3 99.5 2E-14 4.4E-19 122.6 9.6 126 70-246 1-144 (202)
264 COG0378 HypB Ni2+-binding GTPa 99.5 5.1E-14 1.1E-18 115.9 10.2 177 70-311 14-199 (202)
265 COG5258 GTPBP1 GTPase [General 99.5 1.9E-14 4.2E-19 128.6 7.7 225 66-314 114-340 (527)
266 COG1217 TypA Predicted membran 99.5 8.1E-14 1.8E-18 127.5 11.4 181 70-314 6-196 (603)
267 COG5256 TEF1 Translation elong 99.5 2E-13 4.4E-18 123.9 13.4 107 165-303 84-201 (428)
268 KOG0075 GTP-binding ADP-ribosy 99.5 4.2E-14 9.2E-19 110.0 7.1 161 70-313 21-182 (186)
269 cd01882 BMS1 Bms1. Bms1 is an 99.5 5.8E-13 1.2E-17 115.8 14.6 145 66-299 36-182 (225)
270 PRK12740 elongation factor G; 99.5 4.1E-13 9E-18 134.6 14.4 70 164-246 58-127 (668)
271 PRK14845 translation initiatio 99.5 6.4E-13 1.4E-17 135.8 14.1 136 165-314 525-674 (1049)
272 KOG1490 GTP-binding protein CR 99.4 9E-13 2E-17 121.7 12.3 175 67-314 166-342 (620)
273 cd01850 CDC_Septin CDC/Septin. 99.4 1.1E-12 2.3E-17 117.4 11.9 57 197-259 114-171 (276)
274 COG4917 EutP Ethanolamine util 99.4 2.2E-12 4.7E-17 98.0 11.3 143 70-311 2-144 (148)
275 COG0523 Putative GTPases (G3E 99.4 3E-12 6.6E-17 116.0 14.3 160 70-249 2-163 (323)
276 KOG0410 Predicted GTP binding 99.4 1.8E-12 3.8E-17 114.0 11.3 154 67-313 176-341 (410)
277 PLN00023 GTP-binding protein; 99.4 6.6E-13 1.4E-17 119.3 8.6 31 67-97 19-49 (334)
278 PF08477 Miro: Miro-like prote 99.4 4E-13 8.6E-18 104.7 6.3 67 167-242 51-119 (119)
279 PTZ00258 GTP-binding protein; 99.4 9.3E-12 2E-16 115.3 15.7 29 66-94 18-46 (390)
280 PTZ00099 rab6; Provisional 99.4 1E-12 2.2E-17 109.9 7.8 114 165-314 28-143 (176)
281 KOG0461 Selenocysteine-specifi 99.4 8.8E-12 1.9E-16 110.3 13.7 121 164-314 68-194 (522)
282 PRK07560 elongation factor EF- 99.4 6.4E-12 1.4E-16 126.8 14.8 68 165-245 86-153 (731)
283 COG3276 SelB Selenocysteine-sp 99.4 5.3E-12 1.2E-16 115.6 12.4 159 71-313 2-162 (447)
284 PF09439 SRPRB: Signal recogni 99.3 5.8E-12 1.3E-16 104.5 10.0 121 69-246 3-127 (181)
285 COG0480 FusA Translation elong 99.3 2.8E-11 6.2E-16 119.5 15.6 135 67-247 8-144 (697)
286 PF05049 IIGP: Interferon-indu 99.3 2.8E-11 6.1E-16 111.0 14.3 179 68-318 34-223 (376)
287 cd03112 CobW_like The function 99.3 1.1E-11 2.4E-16 101.7 9.6 151 71-243 2-158 (158)
288 KOG0076 GTP-binding ADP-ribosy 99.3 8.2E-12 1.8E-16 100.2 8.3 122 165-315 68-189 (197)
289 COG1116 TauB ABC-type nitrate/ 99.3 6.5E-11 1.4E-15 101.7 14.3 130 66-197 26-181 (248)
290 COG4108 PrfC Peptide chain rel 99.3 6.8E-11 1.5E-15 107.9 15.0 135 70-247 13-149 (528)
291 TIGR02836 spore_IV_A stage IV 99.3 6.1E-11 1.3E-15 108.6 14.6 93 196-316 143-237 (492)
292 KOG4423 GTP-binding protein-li 99.3 1.4E-12 3E-17 105.7 3.2 166 66-313 22-194 (229)
293 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 3.5E-11 7.5E-16 104.2 11.3 171 71-313 1-176 (232)
294 smart00053 DYNc Dynamin, GTPas 99.3 1.2E-10 2.5E-15 101.5 14.4 79 165-247 124-208 (240)
295 KOG2743 Cobalamin synthesis pr 99.3 2.3E-11 5E-16 105.9 9.8 182 66-266 54-249 (391)
296 COG0050 TufB GTPases - transla 99.3 3.5E-11 7.5E-16 104.6 10.5 182 67-314 10-202 (394)
297 PF02492 cobW: CobW/HypB/UreG, 99.3 2.3E-11 4.9E-16 102.0 9.1 151 70-247 1-157 (178)
298 KOG0096 GTPase Ran/TC4/GSP1 (n 99.3 2.4E-12 5.2E-17 104.7 2.9 162 68-314 9-170 (216)
299 KOG0090 Signal recognition par 99.3 6E-11 1.3E-15 98.6 11.2 182 70-311 39-237 (238)
300 KOG0070 GTP-binding ADP-ribosy 99.3 1.7E-11 3.7E-16 99.9 7.5 162 66-314 14-179 (181)
301 PRK10416 signal recognition pa 99.3 3.9E-10 8.5E-15 102.6 17.3 154 67-245 112-273 (318)
302 PRK14974 cell division protein 99.2 7.3E-10 1.6E-14 101.2 18.1 157 67-246 138-294 (336)
303 KOG1707 Predicted Ras related/ 99.2 6.5E-11 1.4E-15 111.5 10.9 168 66-312 6-174 (625)
304 KOG0458 Elongation factor 1 al 99.2 5.6E-11 1.2E-15 112.0 10.0 110 165-303 254-372 (603)
305 PTZ00416 elongation factor 2; 99.2 9E-11 2E-15 119.8 12.2 67 165-244 91-157 (836)
306 TIGR02475 CobW cobalamin biosy 99.2 3.1E-10 6.6E-15 104.4 14.6 168 69-257 4-199 (341)
307 PLN00116 translation elongatio 99.2 8.5E-11 1.8E-15 120.2 11.9 67 165-244 97-163 (843)
308 PRK09601 GTP-binding protein Y 99.2 4.3E-10 9.4E-15 103.1 14.7 24 70-93 3-26 (364)
309 PRK11537 putative GTP-binding 99.2 1.3E-10 2.8E-15 105.8 11.1 157 68-247 3-166 (318)
310 TIGR00490 aEF-2 translation el 99.2 7.2E-11 1.6E-15 119.0 10.0 70 163-245 83-152 (720)
311 KOG1143 Predicted translation 99.2 2.6E-10 5.6E-15 102.1 11.6 215 70-310 168-385 (591)
312 COG0012 Predicted GTPase, prob 99.2 4.1E-10 8.8E-15 102.0 13.1 104 69-208 2-108 (372)
313 cd01853 Toc34_like Toc34-like 99.1 2.9E-10 6.3E-15 100.0 10.8 28 67-94 29-56 (249)
314 TIGR00991 3a0901s02IAP34 GTP-b 99.1 4.6E-10 1E-14 100.4 11.8 27 68-94 37-63 (313)
315 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 2.1E-09 4.6E-14 93.5 15.3 108 66-175 27-167 (254)
316 TIGR00064 ftsY signal recognit 99.1 4.7E-09 1E-13 93.6 17.2 157 67-246 70-232 (272)
317 KOG0072 GTP-binding ADP-ribosy 99.1 4.4E-10 9.6E-15 87.5 9.0 119 164-314 60-180 (182)
318 TIGR01425 SRP54_euk signal rec 99.1 4E-09 8.8E-14 98.8 16.3 152 67-245 98-253 (429)
319 COG1131 CcmA ABC-type multidru 99.1 1.5E-09 3.2E-14 98.0 13.1 108 66-175 28-164 (293)
320 COG1126 GlnQ ABC-type polar am 99.1 2.9E-09 6.2E-14 89.4 13.0 109 66-176 25-165 (240)
321 PF04548 AIG1: AIG1 family; I 99.1 2.9E-09 6.3E-14 91.8 13.0 177 71-316 2-189 (212)
322 COG1136 SalX ABC-type antimicr 99.0 3.8E-09 8.2E-14 90.5 12.9 111 66-178 28-174 (226)
323 KOG0466 Translation initiation 99.0 2.6E-10 5.6E-15 99.6 5.7 123 167-321 126-249 (466)
324 PF00350 Dynamin_N: Dynamin fa 99.0 2.2E-09 4.9E-14 88.7 10.4 69 165-241 100-168 (168)
325 KOG1673 Ras GTPases [General f 99.0 8.1E-10 1.8E-14 87.1 6.5 170 68-318 19-191 (205)
326 KOG3883 Ras family small GTPas 99.0 4E-09 8.7E-14 83.1 10.0 165 67-312 7-174 (198)
327 KOG0071 GTP-binding ADP-ribosy 99.0 2.8E-09 6E-14 82.8 8.9 161 68-312 16-177 (180)
328 COG2884 FtsE Predicted ATPase 99.0 1.4E-08 3.1E-13 83.5 13.5 111 66-178 25-169 (223)
329 COG1125 OpuBA ABC-type proline 99.0 7.2E-09 1.6E-13 89.0 11.3 139 66-205 24-193 (309)
330 KOG1486 GTP-binding protein DR 99.0 5E-09 1.1E-13 89.4 10.0 91 68-211 61-153 (364)
331 KOG0074 GTP-binding ADP-ribosy 98.9 2E-09 4.3E-14 83.6 6.3 160 67-311 15-177 (185)
332 PF00448 SRP54: SRP54-type pro 98.9 1.3E-08 2.8E-13 86.4 11.9 151 69-246 1-155 (196)
333 KOG0460 Mitochondrial translat 98.9 7.3E-09 1.6E-13 92.0 10.3 117 165-314 116-246 (449)
334 cd01900 YchF YchF subfamily. 98.9 2.7E-09 5.8E-14 94.9 7.6 23 72-94 1-23 (274)
335 KOG0465 Mitochondrial elongati 98.9 3.5E-09 7.6E-14 100.3 8.3 134 68-247 38-172 (721)
336 KOG0077 Vesicle coat complex C 98.9 4.7E-09 1E-13 83.9 7.8 171 66-310 17-190 (193)
337 cd03114 ArgK-like The function 98.9 1.3E-08 2.9E-13 82.5 10.0 37 72-108 2-38 (148)
338 KOG0463 GTP-binding protein GP 98.9 2.5E-09 5.5E-14 95.9 6.0 131 167-309 220-354 (641)
339 PRK00771 signal recognition pa 98.9 8E-08 1.7E-12 90.9 16.3 152 67-244 93-245 (437)
340 COG3840 ThiQ ABC-type thiamine 98.9 1.6E-08 3.5E-13 82.7 9.9 107 67-175 23-157 (231)
341 KOG2486 Predicted GTPase [Gene 98.9 7.9E-09 1.7E-13 89.6 8.6 169 66-310 133-313 (320)
342 KOG0468 U5 snRNP-specific prot 98.9 6.3E-09 1.4E-13 99.3 8.4 132 69-244 128-262 (971)
343 KOG1487 GTP-binding protein DR 98.9 4.9E-09 1.1E-13 89.8 6.7 55 40-94 28-84 (358)
344 COG4525 TauB ABC-type taurine 98.9 5.6E-08 1.2E-12 80.4 12.6 131 67-199 29-185 (259)
345 cd01859 MJ1464 MJ1464. This f 98.9 1.9E-08 4.1E-13 82.3 10.0 85 198-314 13-97 (156)
346 COG1120 FepC ABC-type cobalami 98.9 5.3E-08 1.1E-12 85.2 13.1 109 66-176 25-167 (258)
347 cd01849 YlqF_related_GTPase Yl 98.9 2.4E-08 5.3E-13 81.6 10.4 85 199-313 1-85 (155)
348 COG1135 AbcC ABC-type metal io 98.8 4.3E-08 9.2E-13 86.6 12.1 109 66-176 29-170 (339)
349 PRK11889 flhF flagellar biosyn 98.8 1.1E-07 2.3E-12 87.7 14.8 153 68-246 240-392 (436)
350 COG1127 Ttg2A ABC-type transpo 98.8 6.1E-08 1.3E-12 82.7 12.1 109 66-176 31-176 (263)
351 cd03115 SRP The signal recogni 98.8 2.9E-07 6.3E-12 76.6 15.7 151 71-246 2-154 (173)
352 PRK10867 signal recognition pa 98.8 2.8E-07 6.1E-12 87.0 17.3 154 67-245 98-254 (433)
353 COG4555 NatA ABC-type Na+ tran 98.8 1.6E-08 3.4E-13 84.0 7.7 108 66-175 25-161 (245)
354 COG3640 CooC CO dehydrogenase 98.8 8E-08 1.7E-12 81.7 12.0 151 71-244 2-198 (255)
355 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.1E-08 6.7E-13 81.2 9.0 86 197-312 8-94 (157)
356 COG5192 BMS1 GTP-binding prote 98.8 8.9E-08 1.9E-12 90.1 12.9 145 66-298 66-211 (1077)
357 COG3839 MalK ABC-type sugar tr 98.8 8.2E-08 1.8E-12 87.2 12.4 109 66-176 26-162 (338)
358 COG3842 PotA ABC-type spermidi 98.8 5.7E-08 1.2E-12 88.7 11.3 107 66-175 28-164 (352)
359 COG1118 CysA ABC-type sulfate/ 98.8 1.2E-07 2.6E-12 83.7 12.7 126 67-194 26-185 (345)
360 PF00005 ABC_tran: ABC transpo 98.8 5.1E-08 1.1E-12 77.8 9.6 108 67-174 9-135 (137)
361 cd03214 ABC_Iron-Siderophores_ 98.8 5.4E-08 1.2E-12 81.6 9.8 103 66-175 22-125 (180)
362 KOG0467 Translation elongation 98.8 4.3E-08 9.2E-13 95.1 10.2 129 67-243 7-136 (887)
363 PF00735 Septin: Septin; Inte 98.8 8.5E-08 1.8E-12 85.9 11.5 55 198-258 114-169 (281)
364 PRK13537 nodulation ABC transp 98.8 5E-08 1.1E-12 88.8 10.1 108 66-175 30-166 (306)
365 TIGR00959 ffh signal recogniti 98.7 5.5E-07 1.2E-11 85.0 16.9 154 67-245 97-253 (428)
366 PRK13536 nodulation factor exp 98.7 6.6E-08 1.4E-12 89.1 10.6 108 66-175 64-200 (340)
367 KOG1491 Predicted GTP-binding 98.7 3.6E-07 7.7E-12 81.5 14.5 99 68-207 19-124 (391)
368 cd03222 ABC_RNaseL_inhibitor T 98.7 4.5E-08 9.8E-13 81.7 8.4 77 67-175 23-99 (177)
369 PRK12726 flagellar biosynthesi 98.7 3.2E-07 6.9E-12 84.3 14.3 153 67-245 204-356 (407)
370 TIGR01188 drrA daunorubicin re 98.7 6.6E-08 1.4E-12 87.9 9.9 108 66-175 16-152 (302)
371 TIGR00993 3a0901s04IAP86 chlor 98.7 1.3E-07 2.8E-12 91.8 12.1 27 68-94 117-143 (763)
372 PRK12727 flagellar biosynthesi 98.7 2.5E-07 5.5E-12 88.4 13.1 150 66-245 347-498 (559)
373 cd03226 ABC_cobalt_CbiO_domain 98.7 1.5E-07 3.3E-12 80.6 10.5 108 66-175 23-154 (205)
374 COG4181 Predicted ABC-type tra 98.7 5.3E-07 1.2E-11 73.2 12.6 108 66-175 33-174 (228)
375 PRK14722 flhF flagellar biosyn 98.7 4.5E-07 9.8E-12 83.9 13.9 152 66-245 134-295 (374)
376 cd01858 NGP_1 NGP-1. Autoanti 98.7 2.5E-08 5.3E-13 81.8 4.8 28 68-95 101-128 (157)
377 TIGR00960 3a0501s02 Type II (G 98.7 1.8E-07 3.9E-12 80.7 10.4 108 66-175 26-166 (216)
378 cd03231 ABC_CcmA_heme_exporter 98.7 2E-07 4.4E-12 79.6 10.3 108 66-175 23-153 (201)
379 cd03259 ABC_Carb_Solutes_like 98.7 1.8E-07 3.9E-12 80.6 10.0 108 66-175 23-158 (213)
380 COG4604 CeuD ABC-type enteroch 98.7 3E-07 6.6E-12 76.2 10.6 107 67-175 25-163 (252)
381 cd03265 ABC_DrrA DrrA is the A 98.7 1.7E-07 3.6E-12 81.2 9.8 108 66-175 23-159 (220)
382 TIGR03522 GldA_ABC_ATP gliding 98.6 1.5E-07 3.3E-12 85.5 9.9 108 66-175 25-161 (301)
383 COG1119 ModF ABC-type molybden 98.6 6.8E-07 1.5E-11 76.7 13.1 109 66-176 54-200 (257)
384 COG1124 DppF ABC-type dipeptid 98.6 1.3E-07 2.8E-12 81.0 8.7 108 66-175 30-169 (252)
385 TIGR01166 cbiO cobalt transpor 98.6 9.9E-07 2.1E-11 74.6 14.2 108 66-175 15-155 (190)
386 COG3638 ABC-type phosphate/pho 98.6 8.4E-08 1.8E-12 81.7 7.5 107 67-175 28-175 (258)
387 cd03216 ABC_Carb_Monos_I This 98.6 1.3E-07 2.9E-12 78.0 8.6 88 66-175 23-110 (163)
388 cd03238 ABC_UvrA The excision 98.6 2.9E-07 6.3E-12 76.8 10.5 98 66-175 18-117 (176)
389 cd03263 ABC_subfamily_A The AB 98.6 1.7E-07 3.7E-12 81.2 9.5 107 67-175 26-161 (220)
390 TIGR01288 nodI ATP-binding ABC 98.6 1.8E-07 4E-12 85.0 10.0 108 66-175 27-163 (303)
391 PRK13540 cytochrome c biogenes 98.6 1.1E-06 2.4E-11 74.9 14.3 108 66-175 24-155 (200)
392 cd01856 YlqF YlqF. Proteins o 98.6 3.5E-07 7.5E-12 76.1 10.7 84 196-313 18-101 (171)
393 PRK13538 cytochrome c biogenes 98.6 1.9E-07 4.2E-12 79.9 9.4 108 66-175 24-157 (204)
394 KOG0464 Elongation factor G [T 98.6 1.4E-08 3E-13 92.3 2.3 71 163-246 99-169 (753)
395 cd03293 ABC_NrtD_SsuB_transpor 98.6 2.9E-07 6.2E-12 79.8 10.6 107 67-175 28-159 (220)
396 cd03237 ABC_RNaseL_inhibitor_d 98.6 7.4E-07 1.6E-11 78.6 13.3 107 67-175 23-143 (246)
397 cd03261 ABC_Org_Solvent_Resist 98.6 8.8E-07 1.9E-11 77.5 13.7 108 66-175 23-164 (235)
398 TIGR03596 GTPase_YlqF ribosome 98.6 3.1E-07 6.7E-12 82.4 10.8 87 196-316 20-106 (276)
399 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 8.5E-07 1.8E-11 76.6 13.2 108 66-175 27-168 (218)
400 PRK13541 cytochrome c biogenes 98.6 4.1E-07 8.9E-12 77.3 11.0 107 67-175 24-151 (195)
401 COG4586 ABC-type uncharacteriz 98.6 4.2E-07 9E-12 79.0 10.9 110 66-177 47-186 (325)
402 cd03266 ABC_NatA_sodium_export 98.6 1.8E-07 3.9E-12 80.8 8.9 107 67-175 29-164 (218)
403 PRK11247 ssuB aliphatic sulfon 98.6 1E-06 2.2E-11 78.2 13.8 108 66-175 35-161 (257)
404 TIGR01186 proV glycine betaine 98.6 9E-07 1.9E-11 82.2 14.0 108 66-175 16-157 (363)
405 PRK11629 lolD lipoprotein tran 98.6 1.2E-06 2.5E-11 76.6 14.0 108 66-175 32-173 (233)
406 TIGR02211 LolD_lipo_ex lipopro 98.6 1.1E-06 2.4E-11 76.1 13.6 108 66-175 28-169 (221)
407 TIGR02673 FtsE cell division A 98.6 3.9E-07 8.5E-12 78.5 10.7 108 66-175 25-165 (214)
408 TIGR03864 PQQ_ABC_ATP ABC tran 98.6 3.3E-07 7.2E-12 80.3 10.4 108 66-175 24-160 (236)
409 TIGR02314 ABC_MetN D-methionin 98.6 8E-07 1.7E-11 82.0 13.3 108 66-175 28-168 (343)
410 PRK06731 flhF flagellar biosyn 98.6 1.4E-06 3E-11 77.4 14.3 153 68-246 74-226 (270)
411 PRK13637 cbiO cobalt transport 98.6 1.2E-06 2.6E-11 79.1 14.1 110 66-175 30-172 (287)
412 PRK11248 tauB taurine transpor 98.6 1.3E-06 2.7E-11 77.6 14.0 108 66-175 24-156 (255)
413 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 2.5E-07 5.5E-12 74.7 8.7 76 66-175 23-98 (144)
414 COG4559 ABC-type hemin transpo 98.6 9.5E-07 2.1E-11 74.2 12.1 140 66-207 24-201 (259)
415 cd03264 ABC_drug_resistance_li 98.6 2.7E-07 5.8E-12 79.4 9.4 105 68-175 25-158 (211)
416 cd04178 Nucleostemin_like Nucl 98.6 5.5E-08 1.2E-12 80.8 4.9 28 67-94 115-142 (172)
417 PRK11650 ugpC glycerol-3-phosp 98.6 9.3E-07 2E-11 82.1 13.5 107 67-175 28-162 (356)
418 PRK09536 btuD corrinoid ABC tr 98.6 1.1E-06 2.4E-11 82.6 14.0 108 66-175 26-167 (402)
419 TIGR01189 ccmA heme ABC export 98.6 3.6E-07 7.8E-12 77.8 9.9 108 66-175 23-155 (198)
420 PRK12289 GTPase RsgA; Reviewed 98.6 3.1E-07 6.6E-12 84.7 10.0 86 196-311 88-173 (352)
421 PRK11153 metN DL-methionine tr 98.6 1.1E-06 2.5E-11 81.2 13.9 108 66-175 28-168 (343)
422 cd03225 ABC_cobalt_CbiO_domain 98.6 4.2E-07 9.2E-12 78.1 10.4 108 66-175 24-162 (211)
423 COG4175 ProV ABC-type proline/ 98.6 7.4E-07 1.6E-11 79.0 11.7 125 66-192 51-210 (386)
424 cd03269 ABC_putative_ATPase Th 98.6 4.1E-07 8.9E-12 78.2 10.1 107 67-175 24-156 (210)
425 COG0552 FtsY Signal recognitio 98.6 1.8E-06 3.8E-11 77.5 14.1 155 66-245 136-298 (340)
426 TIGR03771 anch_rpt_ABC anchore 98.6 6.2E-07 1.3E-11 77.9 11.2 107 67-175 4-141 (223)
427 TIGR03608 L_ocin_972_ABC putat 98.6 3.6E-07 7.9E-12 78.2 9.6 107 67-175 22-162 (206)
428 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.6 6.1E-07 1.3E-11 78.0 11.0 108 66-175 45-170 (224)
429 COG1134 TagH ABC-type polysacc 98.6 8.3E-07 1.8E-11 76.2 11.5 107 66-174 50-174 (249)
430 PRK12724 flagellar biosynthesi 98.6 2E-06 4.4E-11 80.3 14.9 148 68-245 222-373 (432)
431 COG0411 LivG ABC-type branched 98.6 4.9E-07 1.1E-11 77.5 10.0 108 66-175 27-177 (250)
432 cd03262 ABC_HisP_GlnQ_permease 98.6 5.2E-07 1.1E-11 77.7 10.5 108 66-175 23-163 (213)
433 KOG0781 Signal recognition par 98.6 8.1E-07 1.7E-11 82.5 12.0 164 66-247 375-546 (587)
434 TIGR01184 ntrCD nitrate transp 98.6 5.9E-07 1.3E-11 78.4 10.8 107 67-175 9-142 (230)
435 PRK06995 flhF flagellar biosyn 98.6 2.7E-06 5.8E-11 81.2 16.0 148 68-245 255-405 (484)
436 cd03292 ABC_FtsE_transporter F 98.6 4.7E-07 1E-11 78.0 10.1 107 67-175 25-164 (214)
437 cd03301 ABC_MalK_N The N-termi 98.6 4.2E-07 9.2E-12 78.3 9.8 107 67-175 24-158 (213)
438 cd03218 ABC_YhbG The ABC trans 98.6 5E-07 1.1E-11 78.9 10.3 108 66-175 23-161 (232)
439 PRK14723 flhF flagellar biosyn 98.6 1.1E-06 2.4E-11 87.7 13.8 151 68-246 184-338 (767)
440 cd03298 ABC_ThiQ_thiamine_tran 98.6 5.3E-07 1.2E-11 77.5 10.3 108 66-175 21-156 (211)
441 TIGR03265 PhnT2 putative 2-ami 98.6 1.5E-06 3.3E-11 80.6 13.9 107 67-175 28-162 (353)
442 COG1419 FlhF Flagellar GTP-bin 98.6 1.6E-06 3.6E-11 79.8 13.8 148 68-245 202-352 (407)
443 PRK13539 cytochrome c biogenes 98.6 5.1E-07 1.1E-11 77.5 10.0 107 67-175 26-155 (207)
444 TIGR02315 ABC_phnC phosphonate 98.6 1.5E-06 3.2E-11 76.5 13.1 108 66-175 25-173 (243)
445 cd03295 ABC_OpuCA_Osmoprotecti 98.6 5.1E-07 1.1E-11 79.4 10.2 110 66-175 24-163 (242)
446 cd03268 ABC_BcrA_bacitracin_re 98.5 5.2E-07 1.1E-11 77.4 9.9 107 67-175 24-154 (208)
447 cd01855 YqeH YqeH. YqeH is an 98.5 3.7E-07 8E-12 77.2 8.8 91 197-313 34-125 (190)
448 COG1122 CbiO ABC-type cobalt t 98.5 9.3E-07 2E-11 77.0 11.4 109 66-176 27-167 (235)
449 PRK11000 maltose/maltodextrin 98.5 1.5E-06 3.2E-11 81.2 13.5 107 67-175 27-161 (369)
450 cd03235 ABC_Metallic_Cations A 98.5 5.1E-07 1.1E-11 77.8 9.8 107 67-175 23-160 (213)
451 PRK05703 flhF flagellar biosyn 98.5 2E-06 4.3E-11 81.5 14.5 148 69-245 221-371 (424)
452 TIGR03258 PhnT 2-aminoethylpho 98.5 6E-07 1.3E-11 83.4 10.7 107 67-175 29-165 (362)
453 cd03223 ABCD_peroxisomal_ALDP 98.5 5E-07 1.1E-11 74.8 9.1 96 66-175 24-119 (166)
454 cd03229 ABC_Class3 This class 98.5 1E-06 2.2E-11 73.7 11.1 102 66-175 23-128 (178)
455 PRK10851 sulfate/thiosulfate t 98.5 1.6E-06 3.4E-11 80.5 13.4 107 67-175 26-164 (353)
456 cd03294 ABC_Pro_Gly_Bertaine T 98.5 6.1E-07 1.3E-11 80.2 10.3 108 66-175 47-188 (269)
457 cd03215 ABC_Carb_Monos_II This 98.5 7E-07 1.5E-11 75.0 10.1 98 66-175 23-132 (182)
458 PRK09452 potA putrescine/sperm 98.5 1.9E-06 4.2E-11 80.4 14.0 108 66-175 37-172 (375)
459 COG3845 ABC-type uncharacteriz 98.5 1.6E-06 3.5E-11 81.1 13.2 109 66-176 27-169 (501)
460 cd03256 ABC_PhnC_transporter A 98.5 1.9E-06 4E-11 75.7 13.2 108 66-175 24-172 (241)
461 PRK10070 glycine betaine trans 98.5 2E-06 4.4E-11 80.8 14.1 108 66-175 51-192 (400)
462 PRK11124 artP arginine transpo 98.5 7.7E-07 1.7E-11 78.3 10.7 107 67-175 26-169 (242)
463 PRK13635 cbiO cobalt transport 98.5 2.1E-06 4.6E-11 77.2 13.7 108 66-175 30-168 (279)
464 TIGR03411 urea_trans_UrtD urea 98.5 8.5E-07 1.8E-11 77.9 10.9 108 66-175 25-171 (242)
465 cd03258 ABC_MetN_methionine_tr 98.5 7.2E-07 1.6E-11 77.9 10.4 108 66-175 28-168 (233)
466 PRK10584 putative ABC transpor 98.5 2.3E-06 5E-11 74.5 13.5 107 67-175 34-174 (228)
467 COG4608 AppF ABC-type oligopep 98.5 1.6E-06 3.4E-11 75.8 12.1 103 66-176 36-138 (268)
468 TIGR02142 modC_ABC molybdenum 98.5 2.1E-06 4.6E-11 79.7 14.0 107 67-175 21-159 (354)
469 PRK11432 fbpC ferric transport 98.5 2.1E-06 4.6E-11 79.5 13.8 108 66-175 29-164 (351)
470 TIGR00157 ribosome small subun 98.5 6.8E-07 1.5E-11 78.7 10.1 85 196-310 35-120 (245)
471 cd03296 ABC_CysA_sulfate_impor 98.5 2.2E-06 4.8E-11 75.2 13.3 108 66-175 25-164 (239)
472 PRK12723 flagellar biosynthesi 98.5 2.4E-06 5.1E-11 79.8 14.1 150 68-246 173-327 (388)
473 cd03219 ABC_Mj1267_LivG_branch 98.5 7.6E-07 1.7E-11 77.9 10.4 108 66-175 23-171 (236)
474 PRK10908 cell division protein 98.5 8E-07 1.7E-11 77.1 10.3 108 66-175 25-165 (222)
475 cd03233 ABC_PDR_domain1 The pl 98.5 2.1E-06 4.6E-11 73.3 12.8 107 66-175 30-146 (202)
476 COG1101 PhnK ABC-type uncharac 98.5 5.7E-07 1.2E-11 75.6 8.8 107 67-173 30-174 (263)
477 KOG0780 Signal recognition par 98.5 1.7E-06 3.6E-11 78.5 12.4 135 63-215 95-231 (483)
478 TIGR02868 CydC thiol reductant 98.5 1.5E-06 3.2E-11 85.2 13.4 110 66-175 358-498 (529)
479 PRK14721 flhF flagellar biosyn 98.5 2.6E-06 5.7E-11 80.1 14.2 151 67-246 189-341 (420)
480 TIGR01277 thiQ thiamine ABC tr 98.5 7.4E-07 1.6E-11 76.8 9.9 108 66-175 21-156 (213)
481 PRK11144 modC molybdate transp 98.5 2.5E-06 5.4E-11 79.2 14.0 107 67-175 22-156 (352)
482 TIGR03740 galliderm_ABC gallid 98.5 8.8E-07 1.9E-11 76.9 10.3 108 66-175 23-152 (223)
483 cd03297 ABC_ModC_molybdenum_tr 98.5 8.3E-07 1.8E-11 76.5 10.0 106 67-175 22-159 (214)
484 cd03260 ABC_PstB_phosphate_tra 98.5 7.5E-07 1.6E-11 77.5 9.8 108 66-175 23-169 (227)
485 cd03267 ABC_NatA_like Similar 98.5 2.9E-06 6.4E-11 74.3 13.6 108 66-175 44-181 (236)
486 COG4988 CydD ABC-type transpor 98.5 1.6E-06 3.4E-11 82.9 12.4 111 66-176 344-485 (559)
487 PRK09493 glnQ glutamine ABC tr 98.5 9E-07 2E-11 77.7 10.1 107 67-175 25-164 (240)
488 PRK13543 cytochrome c biogenes 98.5 4.3E-06 9.3E-11 72.1 14.1 108 66-175 34-165 (214)
489 PRK10771 thiQ thiamine transpo 98.5 9.2E-07 2E-11 77.2 9.8 108 66-175 22-157 (232)
490 KOG0448 Mitofusin 1 GTPase, in 98.5 7.1E-06 1.5E-10 79.4 16.3 32 66-97 106-137 (749)
491 PRK13650 cbiO cobalt transport 98.5 3.3E-06 7.2E-11 75.9 13.5 108 66-175 30-168 (279)
492 TIGR00092 GTP-binding protein 98.5 4.8E-07 1E-11 83.3 8.1 104 70-208 3-108 (368)
493 PRK13632 cbiO cobalt transport 98.5 3.2E-06 6.9E-11 75.6 13.3 108 66-175 32-170 (271)
494 PRK09544 znuC high-affinity zi 98.5 1.2E-06 2.6E-11 77.5 10.5 108 66-175 27-148 (251)
495 PRK14250 phosphate ABC transpo 98.5 8.3E-07 1.8E-11 78.0 9.4 108 67-175 27-159 (241)
496 cd03247 ABCC_cytochrome_bd The 98.5 1.1E-06 2.4E-11 73.5 9.7 101 66-175 25-126 (178)
497 PRK11831 putative ABC transpor 98.5 3.9E-06 8.4E-11 75.0 13.8 108 66-175 30-171 (269)
498 PRK13652 cbiO cobalt transport 98.5 4.1E-06 8.8E-11 75.2 13.9 108 66-175 27-165 (277)
499 PRK11264 putative amino-acid A 98.5 1.4E-06 3E-11 77.0 10.8 108 66-175 26-172 (250)
500 PRK13641 cbiO cobalt transport 98.5 1.2E-06 2.7E-11 79.0 10.6 108 66-175 30-173 (287)
No 1
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-43 Score=296.24 Aligned_cols=257 Identities=67% Similarity=1.117 Sum_probs=246.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+++..|.++|-.|+||||++.+|..+.......++++|.||++.+.|+..++|||+.+.|.++|+.++|||||||.+++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45778899999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
+.|...+.|.+..++......++.++|||||.+.|.|++.+.++...++..+.-+++|+||...+..+..|.++++..+.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc-CccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS-DHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.+.+..+|+|+|.||+|+.+.+...+|+.+++.+.+.+.. +...+..|.+.+...+++|+...+.+.|||.+|.|++++
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf 255 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF 255 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence 9999999999999999999999999999999999999986 778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 020549 305 FKAVEESAQEFMETYKYC 322 (324)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~ 322 (324)
|..+.+.+.++...|.++
T Consensus 256 ~~av~~~vdEy~~~ykp~ 273 (366)
T KOG1532|consen 256 FTAVDESVDEYEEEYKPE 273 (366)
T ss_pred HHHHHHHHHHHHHHhhhH
Confidence 999999999998888765
No 2
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=1.7e-33 Score=245.39 Aligned_cols=234 Identities=38% Similarity=0.619 Sum_probs=176.4
Q ss_pred EEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHH
Q 020549 74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD 153 (324)
Q Consensus 74 iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (324)
|+|++||||||+++++.......++.+.++|.||++...||.+++|+|+.+.+.++|++++|||||+...+++++..++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC
Q 020549 154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p 233 (324)
|..+.+.... ..+.|+|||||.|+|.++.....+.+.+.....-++|+++|+.....+..+....+..+..+.+.+.|
T Consensus 81 ~l~~~i~~~~--~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 81 WLDEEIEKYE--DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHH---SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHhhcC--CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 8887776663 39999999999999999988888888887655578999999988878888888888888888889999
Q ss_pred eEEEeeccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 234 LVLAFNKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 234 ~ilv~NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
+|.|+||+|+.+ .+...++..+...+...+... ...+.+++..+++++....+++++|+++++|+++|+..|.+.
T Consensus 159 ~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~---~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 159 HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESD---YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHH---HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 999999999998 444556666666666555444 667777777777666554489999999999999999999876
Q ss_pred H
Q 020549 312 A 312 (324)
Q Consensus 312 ~ 312 (324)
+
T Consensus 236 ~ 236 (238)
T PF03029_consen 236 N 236 (238)
T ss_dssp H
T ss_pred h
Confidence 5
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=217.84 Aligned_cols=174 Identities=26% Similarity=0.353 Sum_probs=139.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+|+|+||||||||+|+|+|...+. ++..+.|| |.+++ |+.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisI------------vS~k~QTT----R~~I~--------------GI~t---- 50 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RNRIR--------------GIVT---- 50 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEe------------ecCCcchh----hhhee--------------EEEE----
Confidence 55679999999999999999999997764 78888888 55552 6665
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhcc--CCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST--FPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~--~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+.+++|+||||++++ ++.++..|.+.+..+ .+|+++||||+.+++...+.+. +.
T Consensus 51 ---------------~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i-----l~ 108 (298)
T COG1159 51 ---------------TDNAQIIFVDTPGIHKP--KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI-----LE 108 (298)
T ss_pred ---------------cCCceEEEEeCCCCCCc--chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH-----HH
Confidence 34789999999999998 788888888887764 4799999999999888776442 24
Q ss_pred HHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.++....|+++++||+|..+++.. ....+... ...++..++|+||++|.|++.|
T Consensus 109 ~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~-------------------------~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 109 QLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLK-------------------------KLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred HHhhcCCCeEEEEEccccCCcHHHHHHHHHHHH-------------------------hhCCcceEEEeeccccCCHHHH
Confidence 455567899999999999988752 22222222 2345679999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 020549 305 FKAVEESAQEFMETYKYC 322 (324)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~ 322 (324)
.+.+..++++++++|+.+
T Consensus 164 ~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 164 LEIIKEYLPEGPWYYPED 181 (298)
T ss_pred HHHHHHhCCCCCCcCChh
Confidence 999999999999888764
No 4
>PRK13768 GTPase; Provisional
Probab=99.94 E-value=1.1e-25 Score=198.62 Aligned_cols=243 Identities=33% Similarity=0.554 Sum_probs=185.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
...+++.|++|+||||++..+.......+..+.+++.||.....++.+..++++.+...+++...++++++..+.+.+.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~ 81 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL 81 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence 35789999999999999999998877778899999999998888888888899999999999999999999887766656
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.....+....+... +.++++|||||+.+++.++.....+.+.+....+++++|++|++....+.++.......+....
T Consensus 82 ~~~~~~l~~~l~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~ 159 (253)
T PRK13768 82 LTKADEIKEEIESL--DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL 159 (253)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH
Confidence 66666666666533 4599999999999987777777777777765447999999999887766654433222222223
Q ss_pred hcCCCeEEEeeccccCChHhHHH---HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALE---WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
..++|+++|+||+|+.+...... ..+.+..+...+........++..++...+..+....+++++||++++|+++|+
T Consensus 160 ~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 160 RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH
Confidence 56899999999999998754432 333333343444333222256666666666666556789999999999999999
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
+.|.+.++
T Consensus 240 ~~I~~~l~ 247 (253)
T PRK13768 240 AAIQEVFC 247 (253)
T ss_pred HHHHHHcC
Confidence 99998875
No 5
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=99.93 E-value=5.5e-25 Score=183.67 Aligned_cols=238 Identities=23% Similarity=0.380 Sum_probs=193.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
+-.+||||||+||||.++-+..-....++.+.++|.||+....+|.+.++++..+++.++|+++++||||+..++++++.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHH
Confidence 34689999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.++.|....++. ....+.++|+|||.++|+++.....+.+.+++ ...-++|-++|+---.++..+++..+..+..+.
T Consensus 83 ~~idwl~~~l~~--~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl 160 (290)
T KOG1533|consen 83 ANIDWLLEKLKP--LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML 160 (290)
T ss_pred hhhHHHHHHhhh--ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH
Confidence 999999888875 36789999999999999877766556665554 445788899998877788889999888889999
Q ss_pred hcCCCeEEEeeccccCChHh-------HHHHHHhHHHHHHHHhcCc--cchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549 229 KTRLPLVLAFNKTDVAQHEF-------ALEWMQDFEVFQAAISSDH--SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~ 299 (324)
....|.|-|+.|+|+...-. ...-.+++..|...+..++ +++..|.+++..+++.|. -+.+.+.+--..+
T Consensus 161 ~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~-LVSF~~L~v~nke 239 (290)
T KOG1533|consen 161 HMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFN-LVSFEVLDVDNKE 239 (290)
T ss_pred hhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccC-ceeeEEeeccCHH
Confidence 99999999999999987533 2223445566666666655 468899999998887763 3455555554555
Q ss_pred ChHHHHHHHHH
Q 020549 300 GIEAYFKAVEE 310 (324)
Q Consensus 300 gv~~l~~~i~~ 310 (324)
.+-.|...|.+
T Consensus 240 Sml~l~~~IDk 250 (290)
T KOG1533|consen 240 SMLRLQQTIDK 250 (290)
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=9.5e-25 Score=195.12 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=114.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|+||||||||+|+|++..... ++..+.+| +..+ .|+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~------------vs~~~~TT----r~~i--------------~~i~~------- 44 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI------------TSPKAQTT----RNRI--------------SGIHT------- 44 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee------------cCCCCCcc----cCcE--------------EEEEE-------
Confidence 69999999999999999999976542 44555554 2111 02211
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
..+.+++||||||+++. .......+.+.+.. ..+|+++||+|++.......++ +..+.
T Consensus 45 ------------~~~~qii~vDTPG~~~~--~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i------~~~l~ 104 (270)
T TIGR00436 45 ------------TGASQIIFIDTPGFHEK--KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFV------LTKLQ 104 (270)
T ss_pred ------------cCCcEEEEEECcCCCCC--cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHH------HHHHH
Confidence 12457899999998765 22233333332222 3579999999998754433222 23344
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+.|+++|+||+|+............+. ....+.+++++||++|.|+++|++.|
T Consensus 105 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~v~~iSA~~g~gi~~L~~~l 159 (270)
T TIGR00436 105 NLKRPVVLTRNKLDNKFKDKLLPLIDKYA-------------------------ILEDFKDIVPISALTGDNTSFLAAFI 159 (270)
T ss_pred hcCCCEEEEEECeeCCCHHHHHHHHHHHH-------------------------hhcCCCceEEEecCCCCCHHHHHHHH
Confidence 56899999999999986543322221111 12234589999999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 020549 309 EESAQEFMETYKYC 322 (324)
Q Consensus 309 ~~~~~~~~~~~~~~ 322 (324)
.+.+++.++.|+.+
T Consensus 160 ~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 160 EVHLPEGPFRYPED 173 (270)
T ss_pred HHhCCCCCCCCCCc
Confidence 99999988888654
No 7
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=99.92 E-value=1.4e-24 Score=178.44 Aligned_cols=243 Identities=26% Similarity=0.402 Sum_probs=198.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.-+.++|+.|+||||+++.+..+....++...++|.||+.....+...+|+|+.+.++++|+.+.+|||||.+.+++++-
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~ 83 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLL 83 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.++.|....+ ..-.-+++++|+|||.+.|++......+.+.+.+ .+.-+++|++|+.--.+...|++..+.++..+.
T Consensus 84 ~NldwL~~~~--Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 84 ENLDWLEEEI--GDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHhhc--cCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH
Confidence 8888776522 2336789999999999999998888888888876 667899999999888888889999999998999
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHH----HHHH--HHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFE----VFQA--AISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~----~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
...+|.|-|++|+||.+....+++.+.+. .+.. .+.-...++.+|.+.+..++.+| .-+.++|.-....+.|+
T Consensus 162 ~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~-~Mv~FlPl~~~~eeSi~ 240 (273)
T KOG1534|consen 162 SLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDY-SMVNFLPLDSSDEESIN 240 (273)
T ss_pred HhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccc-cceeeeecCCCCHHHHH
Confidence 99999999999999998743222221111 1111 11111235777888888777665 34789999988889999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
.++..|...+..+
T Consensus 241 ~iL~~ID~aiQy~ 253 (273)
T KOG1534|consen 241 IILSYIDDAIQYG 253 (273)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998877643
No 8
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=5.8e-24 Score=195.38 Aligned_cols=175 Identities=21% Similarity=0.237 Sum_probs=115.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|++|||||||+|+|++..+.. ++..+.+| ++.+ .++..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i------------vs~k~~tT----r~~~--------------~~~~~--- 96 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI------------VTPKVQTT----RSII--------------TGIIT--- 96 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee------------ccCCCCCc----cCcE--------------EEEEE---
Confidence 355689999999999999999999876532 22233332 1110 01111
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+.+++||||||+++++ ......+.+.... ..+|+++||+|+..++...+.+ .+
T Consensus 97 ----------------~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il 153 (339)
T PRK15494 97 ----------------LKDTQVILYDTPGIFEPK--GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----IL 153 (339)
T ss_pred ----------------eCCeEEEEEECCCcCCCc--ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HH
Confidence 225688999999997652 2233333332211 3579999999998877665422 12
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+...+.|.|+|+||+|+.... ..+..+.+. ....+.+++++||++|.|+++|
T Consensus 154 ~~l~~~~~p~IlViNKiDl~~~~-~~~~~~~l~-------------------------~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 154 DKLRSLNIVPIFLLNKIDIESKY-LNDIKAFLT-------------------------ENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred HHHHhcCCCEEEEEEhhcCcccc-HHHHHHHHH-------------------------hcCCCcEEEEEeccCccCHHHH
Confidence 33444567889999999986431 111111110 1223467999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccC
Q 020549 305 FKAVEESAQEFMETYKYCL 323 (324)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~ 323 (324)
++.|.+.++++++.|+.+.
T Consensus 208 ~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 208 LEYITSKAKISPWLYAEDD 226 (339)
T ss_pred HHHHHHhCCCCCCCCCCCC
Confidence 9999999999999997764
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=3.6e-24 Score=173.44 Aligned_cols=156 Identities=26% Similarity=0.339 Sum_probs=100.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|.||+|||||+|+|++.... +.++|++|. +. ..|.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-------------v~n~pG~Tv----~~--------------~~g~~~------ 43 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-------------VGNWPGTTV----EK--------------KEGIFK------ 43 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-------------EEESTTSSS----EE--------------EEEEEE------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-------------ecCCCCCCe----ee--------------eeEEEE------
Confidence 46999999999999999999998643 455555541 10 012222
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
..+..+.|+|+||+......+.......+++.....|++++|+|+... ...+..+..+..
T Consensus 44 -------------~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l-------~r~l~l~~ql~e 103 (156)
T PF02421_consen 44 -------------LGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL-------ERNLYLTLQLLE 103 (156)
T ss_dssp -------------ETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH-------HHHHHHHHHHHH
T ss_pred -------------ecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH-------HHHHHHHHHHHH
Confidence 125688999999987763333333344445555678999999999642 222333455667
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
.++|+|+|+||+|+....... -+...|.+ .. ++|++++||++|+|+++|++.|
T Consensus 104 ~g~P~vvvlN~~D~a~~~g~~---id~~~Ls~----------------------~L-g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 104 LGIPVVVVLNKMDEAERKGIE---IDAEKLSE----------------------RL-GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TTSSEEEEEETHHHHHHTTEE---E-HHHHHH----------------------HH-TS-EEEEBTTTTBTHHHHHHHH
T ss_pred cCCCEEEEEeCHHHHHHcCCE---ECHHHHHH----------------------Hh-CCCEEEEEeCCCcCHHHHHhhC
Confidence 899999999999987654221 11222211 11 5899999999999999999875
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=4.5e-23 Score=186.51 Aligned_cols=174 Identities=26% Similarity=0.345 Sum_probs=115.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+|+|+||||||||+|+|++..... ++..+.++ +..+ .++..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~------------vs~~~~tt----~~~i--------------~~i~~---- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RHRI--------------RGIVT---- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee------------cCCCCCcc----cccE--------------EEEEE----
Confidence 45679999999999999999999875432 23333333 1110 01211
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+.++.||||||+.+. .......+...... ..+|+++||+|+...+.....+ .+.
T Consensus 50 ---------------~~~~qi~~iDTPG~~~~--~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~-----i~~ 107 (292)
T PRK00089 50 ---------------EDDAQIIFVDTPGIHKP--KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEF-----ILE 107 (292)
T ss_pred ---------------cCCceEEEEECCCCCCc--hhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHH-----HHH
Confidence 12468999999998775 22333333333322 4579999999998855443321 123
Q ss_pred HHhhcCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.+...+.|+++|+||+|+.. ........+.+. ...++.+++++||++|.|+++|
T Consensus 108 ~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~-------------------------~~~~~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 108 KLKKVKTPVILVLNKIDLVKDKEELLPLLEELS-------------------------ELMDFAEIVPISALKGDNVDEL 162 (292)
T ss_pred HHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHH-------------------------hhCCCCeEEEecCCCCCCHHHH
Confidence 34455789999999999984 343333322222 2234578999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 020549 305 FKAVEESAQEFMETYKYC 322 (324)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~ 322 (324)
++.|.+.+++.++.|..+
T Consensus 163 ~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 163 LDVIAKYLPEGPPYYPED 180 (292)
T ss_pred HHHHHHhCCCCCCCCCCC
Confidence 999999999888877654
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=2.1e-22 Score=184.64 Aligned_cols=206 Identities=18% Similarity=0.254 Sum_probs=136.7
Q ss_pred chhhhhhhhhhhhhhhHhhhhhhhhhhhccccCCCCCCCccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 24 ESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
-..|++|.++.....+++...+. ..+... ......+++|+|+|.||+|||||+|+|+++....
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~--~~e~~~--------~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I------- 205 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP--PDEEEE--------EEEETDPIKIAIIGRPNVGKSSLINAILGEERVI------- 205 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC--Cccccc--------ccccCCceEEEEEeCCCCCchHHHHHhccCceEE-------
Confidence 34566777666655555544432 111111 0001367999999999999999999999997764
Q ss_pred ccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh--
Q 020549 104 NLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-- 181 (324)
Q Consensus 104 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-- 181 (324)
+++.+++| |+.+... +. ..+..+.|+||+|..+...
T Consensus 206 -----v~~~aGTT----RD~I~~~-------------~e--------------------~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 206 -----VSDIAGTT----RDSIDIE-------------FE--------------------RDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred -----ecCCCCcc----ccceeee-------------EE--------------------ECCeEEEEEECCCCCcccccc
Confidence 67777777 5443210 00 2367899999999876310
Q ss_pred hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChH--hHHHHHHhHHH
Q 020549 182 WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEV 258 (324)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~ 258 (324)
.+.......+.+.. ..+|++++|+|+.+++..++ ...+......+.++|+|+||||+++.+ ....+.+.+..
T Consensus 244 e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-----~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~ 318 (444)
T COG1160 244 ESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-----LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR 318 (444)
T ss_pred cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-----HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH
Confidence 00000112222222 45799999999999998887 444567778899999999999998862 22233223321
Q ss_pred HHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549 259 FQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 259 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~ 315 (324)
.+ ++..+++++++||++|.|+..+|+.+.+.....
T Consensus 319 ---~l-------------------~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 319 ---KL-------------------PFLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred ---Hh-------------------ccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 11 566789999999999999999999998876543
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=184.97 Aligned_cols=160 Identities=25% Similarity=0.258 Sum_probs=116.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
+.|+|+|+||||||||+|+|++...+. |+++|+.| ||++.. .+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI------------V~D~pGvT----RDr~y~--------------~~~------ 47 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI------------VSDTPGVT----RDRIYG--------------DAE------ 47 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE------------eecCCCCc----cCCccc--------------eeE------
Confidence 679999999999999999999986653 67777777 766521 110
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
+.+..+.++||+|+.... ...+...+...... ..+|+++||||+..+..+.+.. .+..+
T Consensus 48 -------------~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-----ia~~L 108 (444)
T COG1160 48 -------------WLGREFILIDTGGLDDGD-EDELQELIREQALIAIEEADVILFVVDGREGITPADEE-----IAKIL 108 (444)
T ss_pred -------------EcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHH
Confidence 336779999999987531 12234444443322 4589999999999999988843 23556
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+|+|+||+|-...+. ...++. -+...+++++||.+|.|+.+|++.
T Consensus 109 r~~~kpviLvvNK~D~~~~e~---~~~efy--------------------------slG~g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 109 RRSKKPVILVVNKIDNLKAEE---LAYEFY--------------------------SLGFGEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred HhcCCCEEEEEEcccCchhhh---hHHHHH--------------------------hcCCCCceEeehhhccCHHHHHHH
Confidence 677799999999999874331 111111 124578999999999999999999
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
+.+.++
T Consensus 160 v~~~l~ 165 (444)
T COG1160 160 VLELLP 165 (444)
T ss_pred HHhhcC
Confidence 999985
No 13
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-22 Score=164.64 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=120.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...+||+|+|.+|||||.|+.||....+...+..++ +.|. .++..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI-GVDf-----------~~rt~----------------------- 51 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI-GVDF-----------KIRTV----------------------- 51 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhccee-eeEE-----------EEEEe-----------------------
Confidence 456899999999999999999999998887654443 1111 11110
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
...++..+++||||+||++|. .++..+.+.+.+-++||.|...+++.....|..++ +.
T Consensus 52 -------------e~~gk~iKlQIWDTAGQERFr------tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei---~~ 109 (205)
T KOG0084|consen 52 -------------ELDGKTIKLQIWDTAGQERFR------TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI---DR 109 (205)
T ss_pred -------------eecceEEEEEeeeccccHHHh------hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh---hh
Confidence 001456789999999999983 35666677777778888888888998888885544 66
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc-eeeeccccCCChHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-iv~vSA~~g~gv~~l~ 305 (324)
....+.|.++|+||||+.+...+.. +..+.+ +.+ .+.+ ++++|||.+.||++.|
T Consensus 110 ~~~~~v~~lLVGNK~Dl~~~~~v~~--~~a~~f--------------a~~---------~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 110 YASENVPKLLVGNKCDLTEKRVVST--EEAQEF--------------ADE---------LGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred hccCCCCeEEEeeccccHhheecCH--HHHHHH--------------HHh---------cCCcceeecccCCccCHHHHH
Confidence 7777899999999999987643210 011111 111 1345 8999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 306 KAVEESAQEF 315 (324)
Q Consensus 306 ~~i~~~~~~~ 315 (324)
..|...+...
T Consensus 165 ~~la~~lk~~ 174 (205)
T KOG0084|consen 165 LTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHh
Confidence 9999888653
No 14
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.4e-22 Score=162.39 Aligned_cols=166 Identities=16% Similarity=0.209 Sum_probs=117.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..|++++|..+||||||+++++...|...+..+| +++-...+- .+.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI-----GiDFlskt~--~l~-------------------------- 67 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI-----GIDFLSKTM--YLE-------------------------- 67 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccccccee-----eeEEEEEEE--EEc--------------------------
Confidence 34889999999999999999999999988776655 111111000 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
+..+.+++|||+||++| ...+..+++.+...+++|.+....++...+.|.+.. ..-
T Consensus 68 ---------------d~~vrLQlWDTAGQERF------rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv---~~e 123 (221)
T KOG0094|consen 68 ---------------DRTVRLQLWDTAGQERF------RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDV---RRE 123 (221)
T ss_pred ---------------CcEEEEEEEecccHHHH------hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHH---Hhc
Confidence 33678999999999998 235555666666678888888889998888885433 333
Q ss_pred hhc-CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 228 YKT-RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 228 ~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
... +.-++||+||.||++...+.. ++- ...++++ ++.++++||+.|.||..||.
T Consensus 124 ~gs~~viI~LVGnKtDL~dkrqvs~--eEg--------------~~kAkel---------~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 124 RGSDDVIIFLVGNKTDLSDKRQVSI--EEG--------------ERKAKEL---------NAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred cCCCceEEEEEcccccccchhhhhH--HHH--------------HHHHHHh---------CcEEEEecccCCCCHHHHHH
Confidence 333 366788999999998754311 111 1111111 46899999999999999999
Q ss_pred HHHHHHHHH
Q 020549 307 AVEESAQEF 315 (324)
Q Consensus 307 ~i~~~~~~~ 315 (324)
.|...++..
T Consensus 179 rIaa~l~~~ 187 (221)
T KOG0094|consen 179 RIAAALPGM 187 (221)
T ss_pred HHHHhccCc
Confidence 999988754
No 15
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.9e-21 Score=180.97 Aligned_cols=176 Identities=21% Similarity=0.232 Sum_probs=112.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
-|+|+|.||||||||+|+|++... .++.+|+|| +. ++-|++..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-------------~vs~~p~TT----~~--------------p~~Giv~~------ 203 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-------------KVADYPFTT----LV--------------PNLGVVRV------ 203 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-------------cccCCCCCc----cC--------------cEEEEEEe------
Confidence 599999999999999999998643 266777776 22 12233321
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....++|+||||+.+.... ..++..+.+.+ ..+|++++|+|+... ......+..++..+..+
T Consensus 204 ------------~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~ 269 (390)
T PRK12298 204 ------------DDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ERCRVLLHLIDIAPIDGSDPVENARIIINELEKY 269 (390)
T ss_pred ------------CCCcEEEEEeCCCccccccchhhHHHHHHHHH--HhCCEEEEEeccCcccccChHHHHHHHHHHHHhh
Confidence 11235999999999764211 11333444433 346899999997622 11212122222222222
Q ss_pred hh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhcc-CceeeeccccCCChHHH
Q 020549 228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 228 ~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~iv~vSA~~g~gv~~l 304 (324)
.. .++|+|+|+||+|+.......+.+..+. ..... .+++++||+++.|+++|
T Consensus 270 ~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-------------------------~~~~~~~~Vi~ISA~tg~GIdeL 324 (390)
T PRK12298 270 SPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-------------------------EALGWEGPVYLISAASGLGVKEL 324 (390)
T ss_pred hhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-------------------------HHhCCCCCEEEEECCCCcCHHHH
Confidence 11 4689999999999986543322222211 11122 37999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 020549 305 FKAVEESAQEFMETYKYC 322 (324)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~ 322 (324)
++.|.+.+++.++.|+.+
T Consensus 325 l~~I~~~L~~~~~~~~~~ 342 (390)
T PRK12298 325 CWDLMTFIEENPREEAEE 342 (390)
T ss_pred HHHHHHHhhhCcccCCcc
Confidence 999999999888877654
No 16
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.87 E-value=2e-22 Score=162.17 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=115.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+...+|+|+|.+|+|||||+|++....|...+..+|- ..-.+..-.+|
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg-----adFltKev~Vd-------------------------- 54 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG-----ADFLTKEVQVD-------------------------- 54 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc-----hhheeeEEEEc--------------------------
Confidence 34568999999999999999999999999887766551 11111110111
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.....++||||+||++|. .++ ...++.+.+.+++|.|+...++.....|+.++....
T Consensus 55 -----------------~~~vtlQiWDTAGQERFq---sLg---~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa 111 (210)
T KOG0394|consen 55 -----------------DRSVTLQIWDTAGQERFQ---SLG---VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQA 111 (210)
T ss_pred -----------------CeEEEEEEEecccHHHhh---hcc---cceecCCceEEEEeecCChhhhccHHHHHHHHHHhc
Confidence 224578999999999972 121 122334555677778889999999998886553211
Q ss_pred -HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 -ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 -~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.-.....|+||++||+|+.....+..-.+..+ .++ .-..++|++++|||.+.||++.
T Consensus 112 ~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq--------------~WC--------~s~gnipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 112 SPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQ--------------TWC--------KSKGNIPYFETSAKEATNVDEA 169 (210)
T ss_pred CCCCCCcccEEEEcccccCCCCccceeeHHHHH--------------HHH--------HhcCCceeEEecccccccHHHH
Confidence 11235689999999999976321111111111 111 1235789999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
|+.+.+....
T Consensus 170 Fe~ia~~aL~ 179 (210)
T KOG0394|consen 170 FEEIARRALA 179 (210)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 17
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=178.55 Aligned_cols=165 Identities=19% Similarity=0.271 Sum_probs=118.7
Q ss_pred cccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (324)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (324)
...+.+.+++|+|+||||||||+|+|++...++ |+++|+|| ||.+.. .+.
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AI------------VTdI~GTT----RDviee-------------~i~- 261 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAI------------VTDIAGTT----RDVIEE-------------DIN- 261 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceE------------ecCCCCCc----cceEEE-------------EEE-
Confidence 346789999999999999999999999987764 88999998 654310 000
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhH-HHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
..+..+.++||+|+.+. ..... ..+.+.... ..+|+++||+|++......+... +
T Consensus 262 -------------------i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~--~ 318 (454)
T COG0486 262 -------------------LNGIPVRLVDTAGIRET--DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL--I 318 (454)
T ss_pred -------------------ECCEEEEEEecCCcccC--ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH--H
Confidence 23788999999999874 22221 223333333 45899999999998755444221 1
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
. ....++|+++|+||+|+......... ......+++.+||++|+|+
T Consensus 319 ---~-~~~~~~~~i~v~NK~DL~~~~~~~~~------------------------------~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 319 ---E-LLPKKKPIIVVLNKADLVSKIELESE------------------------------KLANGDAIISISAKTGEGL 364 (454)
T ss_pred ---H-hcccCCCEEEEEechhcccccccchh------------------------------hccCCCceEEEEecCccCH
Confidence 2 34567999999999999986532111 1123457999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQEF 315 (324)
Q Consensus 302 ~~l~~~i~~~~~~~ 315 (324)
+.|.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887654
No 18
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.3e-21 Score=159.47 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=118.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|.++|.+|||||+|+-++....|...+..++ +.|... +. +..
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi-GIDFk~-----------kt------------------i~l-- 56 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI-GIDFKI-----------KT------------------IEL-- 56 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE-EEEEEE-----------EE------------------EEe--
Confidence 4567899999999999999999999998876554333 111100 10 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.+..+.+++|||+||++|.. +...+++.+..-++||.|....+++....|...+ .
T Consensus 57 ----------------~g~~i~lQiWDtaGQerf~t------i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I---~ 111 (207)
T KOG0078|consen 57 ----------------DGKKIKLQIWDTAGQERFRT------ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNI---D 111 (207)
T ss_pred ----------------CCeEEEEEEEEcccchhHHH------HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHH---H
Confidence 02356889999999999833 6666777766667777777777888777775444 5
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....+.|.+||+||+|+.....+. .+. +..|+.++ +++++++|||+|.||++.|
T Consensus 112 e~a~~~v~~~LvGNK~D~~~~R~V~--~e~--------------ge~lA~e~---------G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 112 EHASDDVVKILVGNKCDLEEKRQVS--KER--------------GEALAREY---------GIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred hhCCCCCcEEEeecccccccccccc--HHH--------------HHHHHHHh---------CCeEEEccccCCCCHHHHH
Confidence 6666789999999999998743220 111 22233322 5889999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
-.|.+.+..
T Consensus 167 ~~La~~i~~ 175 (207)
T KOG0078|consen 167 LSLARDILQ 175 (207)
T ss_pred HHHHHHHHh
Confidence 999998764
No 19
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.1e-22 Score=162.65 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=111.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..+||+|+|..|||||||+-|+....|.....++| +..-++.+ +..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI-----GaaF~tkt-------------------------v~~---- 49 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI-----GAAFLTKT-------------------------VTV---- 49 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccccccccc-----ccEEEEEE-------------------------EEe----
Confidence 45789999999999999999999998876433332 01000000 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
....+++.||||+||++|. .+.. .+++.+.+.+++|.|+..+++.....|...+ ...
T Consensus 50 --------------~~~~ikfeIWDTAGQERy~---slap---MYyRgA~AAivvYDit~~~SF~~aK~WvkeL---~~~ 106 (200)
T KOG0092|consen 50 --------------DDNTIKFEIWDTAGQERYH---SLAP---MYYRGANAAIVVYDITDEESFEKAKNWVKEL---QRQ 106 (200)
T ss_pred --------------CCcEEEEEEEEcCCccccc---cccc---ceecCCcEEEEEEecccHHHHHHHHHHHHHH---Hhh
Confidence 0224688999999999962 1111 2334455668888888888887777775444 444
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++-+.||+||+||.....+ ..++... +++. .+..++++|||+|.||+++|..
T Consensus 107 ~~~~~vialvGNK~DL~~~R~V--~~~ea~~--------------yAe~---------~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 107 ASPNIVIALVGNKADLLERREV--EFEEAQA--------------YAES---------QGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred CCCCeEEEEecchhhhhhcccc--cHHHHHH--------------HHHh---------cCCEEEEEecccccCHHHHHHH
Confidence 4456667779999999874322 1111111 1111 3578999999999999999999
Q ss_pred HHHHHHHH
Q 020549 308 VEESAQEF 315 (324)
Q Consensus 308 i~~~~~~~ 315 (324)
|.+.++..
T Consensus 162 Ia~~lp~~ 169 (200)
T KOG0092|consen 162 IAEKLPCS 169 (200)
T ss_pred HHHhccCc
Confidence 99998753
No 20
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=4.4e-21 Score=162.45 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=79.7
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
....+.|+||||+.+|.. .+... ...+|++++|||+.++...+. ...+..+...++|+|+|+||+|+
T Consensus 68 ~~~~i~~iDtPG~~~f~~------~~~~~--~~~~D~ailvVda~~g~~~~~-----~~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIK------EMIRG--LRQADIAILVVDANDGIQPQT-----EEHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHHHH------HHHHH--HTTSSEEEEEEETTTBSTHHH-----HHHHHHHHHTT-SEEEEEETCTS
T ss_pred cccceeecccccccceee------cccce--ecccccceeeeeccccccccc-----ccccccccccccceEEeeeeccc
Confidence 367889999999876522 12222 245799999999999877665 22335667789999999999999
Q ss_pred CChHhHHHHHHhHH-HHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFE-VFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
. .....+..+++. .+.+.. .+. ...+++++||++|.|+++|++.|.+++|
T Consensus 135 ~-~~~~~~~~~~~~~~l~~~~-------------------~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 135 I-EKELEEIIEEIKEKLLKEY-------------------GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp S-HHHHHHHHHHHHHHHHHHT-------------------TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred h-hhhHHHHHHHHHHHhcccc-------------------ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 9 333333333333 111110 111 1468999999999999999999999877
No 21
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=3.2e-20 Score=169.67 Aligned_cols=168 Identities=21% Similarity=0.270 Sum_probs=105.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
..|+|+|.||||||||+|+|++.... +..+|++|. .++-|.+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-------------va~ypfTT~------------------~p~~G~v~~----- 202 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-------------IADYPFTTL------------------HPNLGVVRV----- 202 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-------------cCCCCCcee------------------CceEEEEEe-----
Confidence 45999999999999999999986432 455666651 112222210
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.+.... ..++..+.+.+ ..++++++|+|++... +....|...+ ..
T Consensus 203 -------------~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~a~vlI~ViD~s~~~s~e~~~~~~~EL---~~ 264 (335)
T PRK12299 203 -------------DDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRLLLHLVDIEAVDPVEDYKTIRNEL---EK 264 (335)
T ss_pred -------------CCCcEEEEEeCCCccCCCCccccHHHHHHHHh--hhcCEEEEEEcCCCCCCHHHHHHHHHHH---HH
Confidence 12457999999998763211 12333333333 2468999999987532 2223343333 22
Q ss_pred Hhh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
... .++|+++|+||+|+......... ...... . ....+++++||++++|+++|
T Consensus 265 ~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~----------------------~-~~~~~i~~iSAktg~GI~eL 319 (335)
T PRK12299 265 YSPELADKPRILVLNKIDLLDEEEEREK--RAALEL----------------------A-ALGGPVFLISAVTGEGLDEL 319 (335)
T ss_pred hhhhcccCCeEEEEECcccCCchhHHHH--HHHHHH----------------------H-hcCCCEEEEEcCCCCCHHHH
Confidence 222 46899999999999765422110 111000 0 01368999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFM 316 (324)
Q Consensus 305 ~~~i~~~~~~~~ 316 (324)
++.|.+.+.+.+
T Consensus 320 ~~~L~~~l~~~~ 331 (335)
T PRK12299 320 LRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHhhh
Confidence 999999887643
No 22
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=2.7e-20 Score=153.32 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 243 (324)
+..+.||||||+.++. ..+...+ ..+|++++|+|+.+++...... .+ ..+...+. |+++|+||+|+
T Consensus 50 ~~~~~~~DtpG~~~~~------~~~~~~~--~~ad~ii~V~d~~~~~~~~~~~--~~---~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFI------KNMLAGA--GGIDLVLLVVAADEGIMPQTRE--HL---EILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHH------HHHHhhh--hcCCEEEEEEECCCCccHhHHH--HH---HHHHHhCCCcEEEEEECccc
Confidence 4578999999987652 1111111 3479999999998755443311 11 12222344 99999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
...........++....+. ......+++++||++|+|+++++..|.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 117 VDEDWLELVEEEIRELLAG--------------------TFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHHHHHHHHHh--------------------cCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 8754222222222211100 0013478999999999999999998864
No 23
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.85 E-value=4.8e-21 Score=157.36 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=91.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+...+.+++ .. .+...+. ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~-------~~-~~~~~~~-----------------------~~----- 45 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-------ED-SYRKQVV-----------------------ID----- 45 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc-------hh-eEEEEEE-----------------------EC-----
Confidence 579999999999999999999876643322111 00 0000000 00
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.++.. ....+++. ++.+++|+|... ++.....|...+. ...
T Consensus 46 -------------~~~~~~~i~Dt~G~~~~~~------l~~~~~~~--~~~~i~v~~~~~~~s~~~~~~~~~~i~--~~~ 102 (162)
T cd04138 46 -------------GETCLLDILDTAGQEEYSA------MRDQYMRT--GEGFLCVFAINSRKSFEDIHTYREQIK--RVK 102 (162)
T ss_pred -------------CEEEEEEEEECCCCcchHH------HHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence 1134577999999877521 12223333 456666666543 3333333322221 112
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+....... .....+.+ . ...+++++||++|.|++++|+.
T Consensus 103 ~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 103 DSDDVPMVLVGNKCDLAARTVSS---RQGQDLAK---------------------S--YGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred CCCCCCEEEEEECcccccceecH---HHHHHHHH---------------------H--hCCeEEEecCCCCCCHHHHHHH
Confidence 23578999999999997632111 11111111 1 1468999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98653
No 24
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2.9e-20 Score=154.08 Aligned_cols=163 Identities=17% Similarity=0.277 Sum_probs=95.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc-ccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
++|+++|++|||||||+++|++..+.. ...++++ .+.. +...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-------------~~~~~~t~~~~~-------------------~~~~----- 43 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-------------APYPFTTKSLFV-------------------GHFD----- 43 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-------------CCCCCcccceeE-------------------EEEc-----
Confidence 368999999999999999999875432 1112211 0000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh--hHHHHHHHHhccCCcEEEEEEcCCCCCC-chhHHHhHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSAN-PMTFMSNMLYACS 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~~~~d~iv~vvD~~~~~~-~~~~~~~~~~~~~ 225 (324)
..+.++.||||||+.+...+.. ......... ...+|++++|+|+..... ....+..++..+.
T Consensus 44 --------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~ 108 (168)
T cd01897 44 --------------YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIK 108 (168)
T ss_pred --------------cCceEEEEEECCCcCCccccCCchHHHHHHHHH-HhccCcEEEEEeCCcccccchHHHHHHHHHHH
Confidence 1246899999999854211111 001111111 123588999999876432 1122222222221
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.. ..+.|+|+|+||+|+........ ...+. . ....+++++||++|.|+++++
T Consensus 109 ~~-~~~~pvilv~NK~Dl~~~~~~~~----~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 109 PL-FKNKPVIVVLNKIDLLTFEDLSE----IEEEE----------------------E-LEGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred hh-cCcCCeEEEEEccccCchhhHHH----HHHhh----------------------h-hccCceEEEEecccCCHHHHH
Confidence 11 13799999999999986543322 11100 1 135689999999999999999
Q ss_pred HHHHHHH
Q 020549 306 KAVEESA 312 (324)
Q Consensus 306 ~~i~~~~ 312 (324)
+.|.+.+
T Consensus 161 ~~l~~~~ 167 (168)
T cd01897 161 NKACELL 167 (168)
T ss_pred HHHHHHh
Confidence 9998765
No 25
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=5.8e-21 Score=158.11 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=92.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||++++++..+...+.+++. ..+.. -+.+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~~-----------------------~~~~~----- 45 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE--------DTYRQ-----------------------VISCS----- 45 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch--------heEEE-----------------------EEEEC-----
Confidence 5799999999999999999998876543222110 00000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||++++.. .....+ ..++.+++|+|... ++.....|...+......
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (165)
T cd04140 46 -------------KNICTLQITDTTGSHQFPA------MQRLSI--SKGHAFILVYSVTSKQSLEELKPIYELICEIKGN 104 (165)
T ss_pred -------------CEEEEEEEEECCCCCcchH------HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 1245788999999987621 111112 23466666666544 333333343322211111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+........ .....+. . ....+++++||++|.|++++|+.
T Consensus 105 ~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~----------------------~-~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 105 NIEKIPIMLVGNKCDESHKREVSS--NEGAACA----------------------T-EWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred CCCCCCEEEEEECccccccCeecH--HHHHHHH----------------------H-HhCCcEEEeecCCCCCHHHHHHH
Confidence 125789999999999975322100 0001000 0 11367899999999999999999
Q ss_pred HHHH
Q 020549 308 VEES 311 (324)
Q Consensus 308 i~~~ 311 (324)
|.+.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9754
No 26
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=1.5e-20 Score=159.48 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=101.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+|+|++|||||||+++|.+..+..+.. +.+...+.. ..... +.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-------------~~t~~~~~~------------------~~~~~---~~ 46 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-------------IATVGIDFR------------------NKVVT---VD 46 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc-------------CCcccceeE------------------EEEEE---EC
Confidence 379999999999999999999876643210 000000000 00000 00
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|...... ....| +..+...
T Consensus 47 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~ad~~i~v~D~~~~~s~~~~~~~---~~~i~~~ 102 (191)
T cd04112 47 -------------GVKVKLQIWDTAGQERFRS------VTHAYY--RDAHALLLLYDITNKASFDNIRAW---LTEIKEY 102 (191)
T ss_pred -------------CEEEEEEEEeCCCcHHHHH------hhHHHc--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence 1235788999999866521 111112 23689999999865321 12223 2222333
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+....... ..+...+.. . ...+++++||++|.|++++|..
T Consensus 103 ~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~l~~---------------------~--~~~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 103 AQEDVVIMLLGNKADMSGERVVK--REDGERLAK---------------------E--YGVPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred CCCCCcEEEEEEcccchhccccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHH
Confidence 34578999999999997432110 011111111 1 1368999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 020549 308 VEESAQEFMETYKY 321 (324)
Q Consensus 308 i~~~~~~~~~~~~~ 321 (324)
|.+.+......+++
T Consensus 158 l~~~~~~~~~~~~~ 171 (191)
T cd04112 158 VAKELKHRKYEQPD 171 (191)
T ss_pred HHHHHHHhccccCC
Confidence 99999877655543
No 27
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.5e-20 Score=178.98 Aligned_cols=171 Identities=19% Similarity=0.269 Sum_probs=105.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|++|||||||+|+|++..+.. ++..++++ ++.+. ..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------~s~~~gtT----~d~~~--------------~~~~---- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------VDDVAGTT----VDPVD--------------SLIE---- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc----CCcce--------------EEEE----
Confidence 45899999999999999999999875432 23333333 11100 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH----hccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF----ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~----~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.+.... ..+......+ .-..+|++++|+|+.++...++. ..
T Consensus 256 ---------------~~~~~~~l~DTaG~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~-----~~ 314 (472)
T PRK03003 256 ---------------LGGKTWRFVDTAGLRRRVKQ-ASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ-----RV 314 (472)
T ss_pred ---------------ECCEEEEEEECCCccccccc-cchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH-----HH
Confidence 12456789999998543111 1111111111 11357999999999887655442 12
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+..+...++|+|+|+||+|+............+. ..+ ....+.+++++||++|.||++
T Consensus 315 ~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~---~~l-------------------~~~~~~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 315 LSMVIEAGRALVLAFNKWDLVDEDRRYYLEREID---REL-------------------AQVPWAPRVNISAKTGRAVDK 372 (472)
T ss_pred HHHHHHcCCCEEEEEECcccCChhHHHHHHHHHH---Hhc-------------------ccCCCCCEEEEECCCCCCHHH
Confidence 2444557899999999999986432211111111 000 112357899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEF 315 (324)
Q Consensus 304 l~~~i~~~~~~~ 315 (324)
+|..|.+.+...
T Consensus 373 lf~~i~~~~~~~ 384 (472)
T PRK03003 373 LVPALETALESW 384 (472)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 28
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=1e-20 Score=156.24 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=94.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+...+.+++ .. .+.. .....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~-------~~-~~~~-----------------------~~~~~----- 44 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI-------ED-SYRK-----------------------QIEID----- 44 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCch-------hh-hEEE-----------------------EEEEC-----
Confidence 379999999999999999999877654322111 00 0000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||++++.. .....++ .+|.+++++|.... +.....|...+ ....
T Consensus 45 -------------~~~~~l~i~Dt~g~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--~~~~ 101 (164)
T smart00173 45 -------------GEVCLLDILDTAGQEEFSA------MRDQYMR--TGEGFLLVYSITDRQSFEEIKKFREQI--LRVK 101 (164)
T ss_pred -------------CEEEEEEEEECCCcccchH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHH--HHhc
Confidence 1235778999999887621 1112222 24677777776542 22223332222 1222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. .. ...+++++||++|.|++++|+.
T Consensus 102 ~~~~~pii~v~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 102 DRDDVPIVLVGNKCDLESERVVS--TEEGKELA----------------------RQ-WGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred CCCCCCEEEEEECccccccceEc--HHHHHHHH----------------------HH-cCCEEEEeecCCCCCHHHHHHH
Confidence 33478999999999997532110 00111111 11 1378999999999999999999
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
|.+.+.
T Consensus 157 l~~~~~ 162 (164)
T smart00173 157 LVREIR 162 (164)
T ss_pred HHHHHh
Confidence 998764
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.84 E-value=5.9e-21 Score=157.28 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=92.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||++++++..+...+.+++ .. .+... +...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-------~~-~~~~~-----------------------~~~~----- 45 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------ED-SYRKQ-----------------------IEVD----- 45 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch-------hh-hEEEE-----------------------EEEC-----
Confidence 579999999999999999999876653222111 00 00000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||++++.. ....+++ .+|++++|+|... ++.....|...+. ...
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~--~~~ 102 (163)
T cd04136 46 -------------GQQCMLEILDTAGTEQFTA------MRDLYIK--NGQGFVLVYSITSQSSFNDLQDLREQIL--RVK 102 (163)
T ss_pred -------------CEEEEEEEEECCCccccch------HHHHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence 1235678999999987621 1111222 3467777777643 2332333322221 111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+....... .+....+.+ .+ ..+++++||++|.|++++|..
T Consensus 103 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~~--~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 103 DTENVPMVLVGNKCDLEDERVVS--REEGQALAR---------------------QW--GCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCCCCEEEEEECccccccceec--HHHHHHHHH---------------------Hc--CCeEEEecCCCCCCHHHHHHH
Confidence 23478999999999987532210 011111110 11 278999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98753
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.84 E-value=1.3e-20 Score=157.28 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=96.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||++++.+..+...+.+++. ..+ ...+ ...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~------~~~--~~~~-----------------------~~~----- 46 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE------DAY--KQQA-----------------------RID----- 46 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc------ceE--EEEE-----------------------EEC-----
Confidence 6899999999999999999998877643322210 000 0000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+.. +|++++|+|. ..++.....|...+. ...
T Consensus 47 -------------~~~~~l~i~Dt~G~~~~~~------l~~~~~~~--~d~~ilv~d~~~~~Sf~~~~~~~~~i~--~~~ 103 (172)
T cd04141 47 -------------NEPALLDILDTAGQAEFTA------MRDQYMRC--GEGFIICYSVTDRHSFQEASEFKKLIT--RVR 103 (172)
T ss_pred -------------CEEEEEEEEeCCCchhhHH------HhHHHhhc--CCEEEEEEECCchhHHHHHHHHHHHHH--Hhc
Confidence 1235688999999877521 11222333 4555666554 444444444433332 111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+.....+. .++...+.+ . .+.++++|||++|.||+++|+.
T Consensus 104 ~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 104 LTEDIPLVLVGNKVDLESQRQVT--TEEGRNLAR---------------------E--FNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred CCCCCCEEEEEEChhhhhcCccC--HHHHHHHHH---------------------H--hCCEEEEEecCCCCCHHHHHHH
Confidence 23579999999999986542110 001111111 1 1468999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+..
T Consensus 159 l~~~~~~ 165 (172)
T cd04141 159 LVREIRR 165 (172)
T ss_pred HHHHHHH
Confidence 9987654
No 31
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.84 E-value=1.1e-20 Score=161.43 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=98.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
.|+++|..|||||||+++|....|...+.+++. .. +. ...+. .
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~-----~~-~~-~~~i~-----------------------~------- 44 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVG-----VD-FK-IKTVE-----------------------L------- 44 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcce-----eE-EE-EEEEE-----------------------E-------
Confidence 489999999999999999998877654332210 00 00 00000 0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~ 228 (324)
......+.||||+|++++.. ....+++ .+|++++|+|..+ ++.....|...+ ....
T Consensus 45 -----------~~~~v~l~iwDtaGqe~~~~------l~~~y~~--~ad~iIlVfDvtd~~Sf~~l~~w~~~i---~~~~ 102 (202)
T cd04120 45 -----------RGKKIRLQIWDTAGQERFNS------ITSAYYR--SAKGIILVYDITKKETFDDLPKWMKMI---DKYA 102 (202)
T ss_pred -----------CCEEEEEEEEeCCCchhhHH------HHHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHH---HHhC
Confidence 01246789999999987621 1122233 3577777777654 344444554333 3333
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+.|+++|+||+|+.....+.. .....+. .......++++||++|.||+++|..|
T Consensus 103 ~~~~piilVgNK~DL~~~~~v~~--~~~~~~a----------------------~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 103 SEDAELLLVGNKLDCETDREISR--QQGEKFA----------------------QQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred CCCCcEEEEEECcccccccccCH--HHHHHHH----------------------HhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 45799999999999975332110 0111111 11123679999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
++.+..
T Consensus 159 ~~~~~~ 164 (202)
T cd04120 159 VDDILK 164 (202)
T ss_pred HHHHHH
Confidence 987753
No 32
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=3.6e-20 Score=153.73 Aligned_cols=119 Identities=17% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh--hcCCCeEEEeeccc
Q 020549 166 LDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD 242 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D 242 (324)
..+.||||||+.+..... .......+.+ ..+|++++|+|+.......+....+...+.... ..++|+++|+||+|
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 388999999986432111 1111122222 246899999999765212222222222222221 13689999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
+.+......+..... ......+++++||++|.|++++++.|.+.
T Consensus 126 l~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 126 LLDEEELFELLKELL-------------------------KELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred cCCchhhHHHHHHHH-------------------------hhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 987654322222111 00124679999999999999999998865
No 33
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.2e-20 Score=150.69 Aligned_cols=165 Identities=14% Similarity=0.153 Sum_probs=116.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++++++|..|||||+|+.+++...|...+..++ +.+.+...+. +
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti-Gvefg~r~~~----i----------------------------- 50 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI-GVEFGARMVT----I----------------------------- 50 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccccee-eeeeceeEEE----E-----------------------------
Confidence 45789999999999999999999998876443222 1111111000 0
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
....++++||||+||+.|+. ....+.+.+...++||.|+.++++...+.|...+ +..
T Consensus 51 --------------d~k~IKlqiwDtaGqe~frs------v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~---rq~ 107 (216)
T KOG0098|consen 51 --------------DGKQIKLQIWDTAGQESFRS------VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDA---RQH 107 (216)
T ss_pred --------------cCceEEEEEEecCCcHHHHH------HHHHHhccCcceEEEEEccchhhHHHHHHHHHHH---HHh
Confidence 03467899999999988732 4444555566679999999999999998885544 445
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+..++|++||+||.....+.. +.+..++++. +..+.++||++++||++.|..
T Consensus 108 ~~~NmvImLiGNKsDL~~rR~Vs~----------------EEGeaFA~eh---------gLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 108 SNENMVIMLIGNKSDLEARREVSK----------------EEGEAFAREH---------GLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred cCCCcEEEEEcchhhhhccccccH----------------HHHHHHHHHc---------CceeehhhhhhhhhHHHHHHH
Confidence 567888999999999987653210 0123333333 345668999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
+...+..
T Consensus 163 ta~~Iy~ 169 (216)
T KOG0098|consen 163 TAKEIYR 169 (216)
T ss_pred HHHHHHH
Confidence 8877653
No 34
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-20 Score=162.91 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=122.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+...|++||.||||||||.|.+++..... ++....|| |.++ .|++++
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~------------vS~K~~TT----r~~i--------------lgi~ts- 117 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA------------VSRKVHTT----RHRI--------------LGIITS- 117 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccc------------ccccccce----eeee--------------eEEEec-
Confidence 4567889999999999999999999987663 55555565 2221 366664
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh--hhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchh-HHHhH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMT-FMSNM 220 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~-~~~~~ 220 (324)
...+++|+||||...... ++...-.+.+.... ..+|+++.|+|+...-.... .....
T Consensus 118 ------------------~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~ 179 (379)
T KOG1423|consen 118 ------------------GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHM 179 (379)
T ss_pred ------------------CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHH
Confidence 478999999999876521 11111112222222 35799999999985222211 11111
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHh--------HHHHhccCcee
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLA--------LDEFYKNLKSV 291 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~iv 291 (324)
+ . .-..+|-|+|+||+|........ +....+.. ..+. ....++.++.... ...|..+-++|
T Consensus 180 l---~--~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~--g~l~---~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF 249 (379)
T KOG1423|consen 180 L---E--EYSKIPSILVMNKIDKLKQKRLLLNLKDLLTN--GELA---KLKLEVQEKFTDVPSDEKWRTICGWSHFERVF 249 (379)
T ss_pred H---H--HHhcCCceeeccchhcchhhhHHhhhHHhccc--cccc---hhhhhHHHHhccCCcccccccccCcccceeEE
Confidence 1 1 12468999999999998765431 11111100 0000 0000000000000 00133345799
Q ss_pred eeccccCCChHHHHHHHHHHHHHHHHhhhccCC
Q 020549 292 GVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP 324 (324)
Q Consensus 292 ~vSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~~ 324 (324)
++||++|+||++|.++|...++.++|+|+..++
T Consensus 250 ~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~ 282 (379)
T KOG1423|consen 250 MVSALYGEGIKDLKQYLMSQAPPGPWKYPADIV 282 (379)
T ss_pred EEecccccCHHHHHHHHHhcCCCCCCCCCcccc
Confidence 999999999999999999999999999987653
No 35
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.84 E-value=3.5e-20 Score=153.41 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=96.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+...+.+++. . .+...+ +...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----~-~~~~~~------------------------~~~~----- 46 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG-----I-DFKVKT------------------------VFRN----- 46 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-----e-EEEEEE------------------------EEEC-----
Confidence 5799999999999999999998876543322110 0 000000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|..+.. .......++..+.....
T Consensus 47 -------------~~~~~~~l~Dt~g~~~~~~------~~~~~~--~~~~~~l~v~d~~~~~-s~~~~~~~~~~i~~~~~ 104 (165)
T cd01865 47 -------------DKRVKLQIWDTAGQERYRT------ITTAYY--RGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSW 104 (165)
T ss_pred -------------CEEEEEEEEECCChHHHHH------HHHHHc--cCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhCC
Confidence 1235788999999876521 111111 3468888999875431 11112222222233333
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
...|+++|+||+|+....... .+....+. +. .+.+++++||++|.|++++|+.+.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 105 DNAQVILVGNKCDMEDERVVS--SERGRQLA----------------------DQ-LGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred CCCCEEEEEECcccCcccccC--HHHHHHHH----------------------HH-cCCEEEEEECCCCCCHHHHHHHHH
Confidence 468999999999997543210 01111111 11 135799999999999999999998
Q ss_pred HHHHH
Q 020549 310 ESAQE 314 (324)
Q Consensus 310 ~~~~~ 314 (324)
+.+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87643
No 36
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.84 E-value=2e-20 Score=155.78 Aligned_cols=163 Identities=20% Similarity=0.152 Sum_probs=97.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|.+|||||||++++++..+...+.+++.. .+ ....+ ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~------~~-~~~~~-----------------------~~~------ 45 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGV------DF-EMERF-----------------------EIL------ 45 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee------EE-EEEEE-----------------------EEC------
Confidence 6899999999999999999998776544332210 00 00000 000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~ 228 (324)
+....+.||||||++++.. .....+ ..+|++++|+|... ++.....|...+. ....
T Consensus 46 ------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~--~~~~ 103 (170)
T cd04108 46 ------------GVPFSLQLWDTAGQERFKC------IASTYY--RGAQAIIIVFDLTDVASLEHTRQWLEDAL--KEND 103 (170)
T ss_pred ------------CEEEEEEEEeCCChHHHHh------hHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHH--HhcC
Confidence 1235788999999877521 111112 34689999999865 2332333332211 1111
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
....|+++|+||+|+.+........+....+.+ + ...+++++||++|.|++++|..|
T Consensus 104 ~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~---------------------~--~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 104 PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA---------------------E--MQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CCCCeEEEEEEChhcCccccccccHHHHHHHHH---------------------H--cCCeEEEEECCCCCCHHHHHHHH
Confidence 234678999999998654321100011111110 1 13578999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
.+.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 988754
No 37
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.5e-19 Score=156.69 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|++++|||||+++|....+..+......+.+...++...+-+. .-....+++...+...+.....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~--------~~~~~~~g~~~~~~~~~~~~~~-- 70 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTS--------SVSNEILGFDSDGEVVNYPDNH-- 70 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchh--------hhhhhhcccCCCCceecCCCCc--
Confidence 489999999999999999998777654433332222111111111100 0001123333322211100000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 230 (324)
.+..-.+.. ...+..+.|+||||++++. ..+...+....+|++++|||+..+...++ ...+..+...
T Consensus 71 ~~~~~~~~~--~~~~~~i~liDtpG~~~~~------~~~~~~~~~~~~D~~llVvda~~g~~~~d-----~~~l~~l~~~ 137 (224)
T cd04165 71 LSESDIEIC--EKSSKLVTFIDLAGHERYL------KTTLFGLTGYAPDYAMLVVAANAGIIGMT-----KEHLGLALAL 137 (224)
T ss_pred cccccceee--eeCCcEEEEEECCCcHHHH------HHHHHhhcccCCCEEEEEEECCCCCcHHH-----HHHHHHHHHc
Confidence 000000000 0235678999999986652 12222232235799999999998876654 2223455667
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHH--hcCccchhhHHHHHHH-hHHHHhccCceeeeccccCCChHHHHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAI--SSDHSYTSTLTNSLSL-ALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
++|+++|+||+|+.+..........+....... .+.+.......+.+.. .-..+....|++++||.+|+|+++|+..
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 899999999999987765544444444332210 0000000000000000 0001223469999999999999999988
Q ss_pred HHH
Q 020549 308 VEE 310 (324)
Q Consensus 308 i~~ 310 (324)
|..
T Consensus 218 L~~ 220 (224)
T cd04165 218 LNL 220 (224)
T ss_pred HHh
Confidence 764
No 38
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.84 E-value=1.2e-20 Score=156.78 Aligned_cols=163 Identities=17% Similarity=0.254 Sum_probs=94.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|++|||||||+++|++..+...+..++ ++...... +...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~~--- 50 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-----GVEFLNKD-------------------------LEVD--- 50 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce-----eeEEEEEE-------------------------EEEC---
Confidence 34789999999999999999999876654321111 00000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEE--EEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT--YVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv--~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.....+.||||||++++.. .....++. +|+++ |+++...++.....|...+....
T Consensus 51 ---------------~~~~~l~i~D~~G~~~~~~------~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (170)
T cd04116 51 ---------------GHFVTLQIWDTAGQERFRS------LRTPFYRG--SDCCLLTFAVDDSQSFQNLSNWKKEFIYYA 107 (170)
T ss_pred ---------------CeEEEEEEEeCCChHHHHH------hHHHHhcC--CCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 2245788999999876521 12223333 35555 44555555555555543332111
Q ss_pred -HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 -ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 -~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.....++|+++|+||+|+...... .++...+.+ . ....+++++||++|.|+.++
T Consensus 108 ~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~---------------------~-~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 108 DVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCR---------------------E-NGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred ccccCCCCcEEEEEECccccccccC---HHHHHHHHH---------------------H-CCCCeEEEEECCCCCCHHHH
Confidence 111246899999999998643211 111111111 1 12357899999999999999
Q ss_pred HHHHHHH
Q 020549 305 FKAVEES 311 (324)
Q Consensus 305 ~~~i~~~ 311 (324)
|..+.+.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999864
No 39
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.84 E-value=1.3e-20 Score=155.71 Aligned_cols=159 Identities=11% Similarity=0.144 Sum_probs=92.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++++...+...+.+++ .. .+... +...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~-------~~-~~~~~-----------------------~~~~----- 45 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------ED-SYRKQ-----------------------VEVD----- 45 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc-------hh-eEEEE-----------------------EEEC-----
Confidence 579999999999999999999765543221111 00 00000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....++. +|++++|+|... ++.....|...+ ....
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i--~~~~ 102 (164)
T cd04175 46 -------------GQQCMLEILDTAGTEQFTA------MRDLYMKN--GQGFVLVYSITAQSTFNDLQDLREQI--LRVK 102 (164)
T ss_pred -------------CEEEEEEEEECCCcccchh------HHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHH--HHhc
Confidence 1245678999999877621 11112222 466777776543 233333332222 1222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... ......+.+ . ...+++++||++|.|++++|..
T Consensus 103 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 103 DTEDVPMILVGNKCDLEDERVVG--KEQGQNLAR---------------------Q--WGCAFLETSAKAKINVNEIFYD 157 (164)
T ss_pred CCCCCCEEEEEECCcchhccEEc--HHHHHHHHH---------------------H--hCCEEEEeeCCCCCCHHHHHHH
Confidence 33579999999999997532110 001111111 1 1368999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 158 l~~~l 162 (164)
T cd04175 158 LVRQI 162 (164)
T ss_pred HHHHh
Confidence 98765
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=6.4e-20 Score=174.72 Aligned_cols=172 Identities=19% Similarity=0.307 Sum_probs=106.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|.+|+|||||+|+|++..... +...++++ ++.+. ....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------~~~~~gtt----~~~~~--------------~~~~--- 216 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI------------VSDIAGTT----RDSID--------------IPFE--- 216 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee------------cCCCCCce----ECcEe--------------EEEE---
Confidence 356789999999999999999999864321 22233332 11000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hH-HHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SG-AIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~-~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.++..... .. ....+.... ..+|++++|+|+.++...++. ..
T Consensus 217 ----------------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-----~~ 275 (429)
T TIGR03594 217 ----------------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-----RI 275 (429)
T ss_pred ----------------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-----HH
Confidence 1245789999999876421110 11 111111211 347999999999988765542 22
Q ss_pred HHHHhhcCCCeEEEeeccccC-ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 224 CSILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
+..+...++|+|+|+||+|++ +.....+....+. ..+ .+..+.+++++||++|.|++
T Consensus 276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---~~~-------------------~~~~~~~vi~~SA~~g~~v~ 333 (429)
T TIGR03594 276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR---RKL-------------------PFLDFAPIVFISALTGQGVD 333 (429)
T ss_pred HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH---Hhc-------------------ccCCCCceEEEeCCCCCCHH
Confidence 244455689999999999998 3332222222221 100 22345899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQE 314 (324)
Q Consensus 303 ~l~~~i~~~~~~ 314 (324)
++|+.|.+....
T Consensus 334 ~l~~~i~~~~~~ 345 (429)
T TIGR03594 334 KLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 41
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.83 E-value=1.1e-19 Score=165.85 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=101.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
..|+|+|.||||||||+++|++.... +.++|++|. .++.|.+.-
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-------------va~y~fTT~------------------~p~ig~v~~----- 201 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-------------IADYPFTTL------------------VPNLGVVRV----- 201 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-------------ccCCCCCcc------------------CCEEEEEEe-----
Confidence 46999999999999999999886432 445555541 111222210
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
....++.||||||+.+.... ..++..+.+.+ ..++++++|+|+.... .+...+..+...+..
T Consensus 202 -------------~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~ 266 (329)
T TIGR02729 202 -------------DDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKK 266 (329)
T ss_pred -------------CCceEEEEEeCCCcccCCcccccHHHHHHHHH--HhhCEEEEEEcCccccccCHHHHHHHHHHHHHH
Confidence 11367899999998764211 12333333333 2368999999987531 222222222222222
Q ss_pred Hh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
+. ..++|+++|+||+|+.......++.+.+. +.. ..+++++||++++|+++|
T Consensus 267 ~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~-------------------------~~~-~~~vi~iSAktg~GI~eL 320 (329)
T TIGR02729 267 YSPELAEKPRIVVLNKIDLLDEEELAELLKELK-------------------------KAL-GKPVFPISALTGEGLDEL 320 (329)
T ss_pred hhhhhccCCEEEEEeCccCCChHHHHHHHHHHH-------------------------HHc-CCcEEEEEccCCcCHHHH
Confidence 22 24789999999999987643322222111 111 357999999999999999
Q ss_pred HHHHHHHH
Q 020549 305 FKAVEESA 312 (324)
Q Consensus 305 ~~~i~~~~ 312 (324)
+..|.+.+
T Consensus 321 ~~~I~~~l 328 (329)
T TIGR02729 321 LYALAELL 328 (329)
T ss_pred HHHHHHHh
Confidence 99998765
No 42
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=2.3e-20 Score=153.85 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=93.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|+|||||++++++..+.....+++ ... +...+ ...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-------~~~-~~~~~----------------------~~~------ 46 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-------EDS-YTKQC----------------------EID------ 46 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc-------cce-EEEEE----------------------EEC------
Confidence 689999999999999999999876543221111 000 00000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.++.. .....+. .+|.+++|+|..+.. .....|...+ ....
T Consensus 47 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~--~~~~ 103 (164)
T cd04145 47 -------------GQWAILDILDTAGQEEFSA------MREQYMR--TGEGFLLVFSVTDRGSFEEVDKFHTQI--LRVK 103 (164)
T ss_pred -------------CEEEEEEEEECCCCcchhH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHH--HHHh
Confidence 1235688999999877621 1222232 357888888876532 2222232211 1112
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. .. ...+++++||++|.|++++|+.
T Consensus 104 ~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 104 DRDEFPMILVGNKADLEHQRKVS--REEGQELA----------------------RK-LKIPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred CCCCCCEEEEeeCccccccceec--HHHHHHHH----------------------HH-cCCcEEEeeCCCCCCHHHHHHH
Confidence 23578999999999997543110 01111111 11 1368999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04145 159 LVRVI 163 (164)
T ss_pred HHHhh
Confidence 98764
No 43
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=2.9e-20 Score=159.11 Aligned_cols=168 Identities=18% Similarity=0.152 Sum_probs=98.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+...+.+++. .+... ..+.+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~-~d~~~------~~v~~~---------------------------- 45 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIG-VDFAL------KVIEWD---------------------------- 45 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-EEEEE------EEEEEC----------------------------
Confidence 4799999999999999999998876543332220 00000 000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHH-HH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC-SI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~-~~ 226 (324)
. .....+.||||||++++.. ....++ ..++++++|+|.... +.....|...+... ..
T Consensus 46 ~------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~ 105 (201)
T cd04107 46 P------------NTVVRLQLWDIAGQERFGG------MTRVYY--RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL 105 (201)
T ss_pred C------------CCEEEEEEEECCCchhhhh------hHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence 0 1245788999999876511 111122 345888888887542 33333443333211 11
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....++|+|+|+||+|+...... ..++...+. ......+++++||++|.||+++|+
T Consensus 106 ~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 106 PNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFC----------------------KENGFIGWFETSAKEGINIEEAMR 161 (201)
T ss_pred cCCCCCcEEEEEECCCccccccc--CHHHHHHHH----------------------HHcCCceEEEEeCCCCCCHHHHHH
Confidence 11357899999999999742211 011111111 111235799999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 307 AVEESAQEFM 316 (324)
Q Consensus 307 ~i~~~~~~~~ 316 (324)
.|.+.+....
T Consensus 162 ~l~~~l~~~~ 171 (201)
T cd04107 162 FLVKNILAND 171 (201)
T ss_pred HHHHHHHHhc
Confidence 9999876543
No 44
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.3e-19 Score=171.74 Aligned_cols=170 Identities=23% Similarity=0.298 Sum_probs=104.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
...|+|+|.||||||||+|+|++.... +.++|++| +.++.|.+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk-------------IadypfTT------------------l~P~lGvv~----- 202 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK-------------IADYPFTT------------------LVPNLGVVQ----- 202 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc-------------ccccCccc------------------ccceEEEEE-----
Confidence 356999999999999999999986432 45566665 112223222
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCC---Cc---hhHHHhHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA---NP---MTFMSNML 221 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~---~~---~~~~~~~~ 221 (324)
..+..+.||||||+.+..... .++..+.+.+ ..+|++|+|||++... .+ ...+...+
T Consensus 203 --------------~~~~~f~laDtPGliegas~g~gLg~~fLrhi--eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL 266 (500)
T PRK12296 203 --------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ERCAVLVHVVDCATLEPGRDPLSDIDALEAEL 266 (500)
T ss_pred --------------ECCeEEEEEECCCCccccchhhHHHHHHHHHH--HhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence 124679999999986532111 1222222322 3479999999987421 12 22232222
Q ss_pred HHHHH-H-------hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeee
Q 020549 222 YACSI-L-------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGV 293 (324)
Q Consensus 222 ~~~~~-~-------~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~v 293 (324)
..... + ...++|+|+|+||+|+.......+.. ... + .. ...+++++
T Consensus 267 ~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l---~~~-----------------l----~~--~g~~Vf~I 320 (500)
T PRK12296 267 AAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFV---RPE-----------------L----EA--RGWPVFEV 320 (500)
T ss_pred HHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHH---HHH-----------------H----HH--cCCeEEEE
Confidence 21110 0 12468999999999997544322111 100 0 01 14689999
Q ss_pred ccccCCChHHHHHHHHHHHHHHH
Q 020549 294 SSVSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 294 SA~~g~gv~~l~~~i~~~~~~~~ 316 (324)
||++++|+++|+..|.+.+....
T Consensus 321 SA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 321 SAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999887644
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=5.7e-20 Score=153.83 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=96.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++|.+..+...+.+++.. .+ ...+ ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~------~~--~~~~-----------------------~~~----- 45 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD------NY--AVTV-----------------------MIG----- 45 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee------ee--EEEE-----------------------EEC-----
Confidence 57999999999999999999988775444333210 00 0000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~~~~ 226 (324)
.....+.||||||++++.. +.... -..+|++++|+|..+. +.... .|...+ ..
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~~~-~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i---~~ 101 (175)
T cd01874 46 -------------GEPYTLGLFDTAGQEDYDR-------LRPLS-YPQTDVFLVCFSVVSPSSFENVKEKWVPEI---TH 101 (175)
T ss_pred -------------CEEEEEEEEECCCccchhh-------hhhhh-cccCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence 1235788999999987621 11111 1235788888877543 33332 343322 22
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
. ..+.|+|+|+||+|+.......+..... . ......+.+..+........++++||++|.|++++|+
T Consensus 102 ~-~~~~piilvgnK~Dl~~~~~~~~~l~~~--------~----~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~ 168 (175)
T cd01874 102 H-CPKTPFLLVGTQIDLRDDPSTIEKLAKN--------K----QKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFD 168 (175)
T ss_pred h-CCCCCEEEEEECHhhhhChhhHHHhhhc--------c----CCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHH
Confidence 1 2468999999999986543221111000 0 0000111111111112336899999999999999999
Q ss_pred HHHHH
Q 020549 307 AVEES 311 (324)
Q Consensus 307 ~i~~~ 311 (324)
.++++
T Consensus 169 ~~~~~ 173 (175)
T cd01874 169 EAILA 173 (175)
T ss_pred HHHHH
Confidence 99875
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.83 E-value=7.5e-20 Score=151.74 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=97.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|.+..+...+.+++ +. ++.. + .+...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~-----~~---~~~~----~------------------~~~~~---- 48 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI-----GI---DFKI----R------------------TIELD---- 48 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc-----cc---eEEE----E------------------EEEEC----
Confidence 4789999999999999999999887654332211 00 0000 0 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.||||||+.++.. .....+ ..+|++++++|..+... ......++..+....
T Consensus 49 --------------~~~~~l~l~D~~g~~~~~~------~~~~~~--~~ad~~i~v~d~~~~~s-~~~~~~~~~~i~~~~ 105 (167)
T cd01867 49 --------------GKKIKLQIWDTAGQERFRT------ITTAYY--RGAMGIILVYDITDEKS-FENIRNWMRNIEEHA 105 (167)
T ss_pred --------------CEEEEEEEEeCCchHHHHH------HHHHHh--CCCCEEEEEEECcCHHH-HHhHHHHHHHHHHhC
Confidence 1235788999999876521 111122 34689999998754321 111112222222333
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+.|+++|+||+|+.+.... ..+....+.. . ...+++++||++|.|++++|..|
T Consensus 106 ~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 106 SEDVERMLVGNKCDMEEKRVV--SKEEGEALAD---------------------E--YGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred CCCCcEEEEEECcccccccCC--CHHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHHH
Confidence 457899999999999854221 1111111111 1 13579999999999999999999
Q ss_pred HHHHH
Q 020549 309 EESAQ 313 (324)
Q Consensus 309 ~~~~~ 313 (324)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T cd01867 161 AKDIK 165 (167)
T ss_pred HHHHH
Confidence 98763
No 47
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=9e-20 Score=167.98 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=96.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+|+|++.... +.+.+++| .|.... .+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~-------------v~~~~~tT-~d~~~~----------------~i~~---- 233 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY-------------AADQLFAT-LDPTTR----------------RLDL---- 233 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCccc-cCCEEE----------------EEEe----
Confidence 4588999999999999999999986421 22222222 110000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
..+..+.||||||+.+-....... .+...+. ...+|++++|+|+++...... .......+..
T Consensus 234 ---------------~~~~~i~l~DT~G~~~~l~~~lie-~f~~tle~~~~ADlil~VvD~s~~~~~~~-~~~~~~~L~~ 296 (351)
T TIGR03156 234 ---------------PDGGEVLLTDTVGFIRDLPHELVA-AFRATLEEVREADLLLHVVDASDPDREEQ-IEAVEKVLEE 296 (351)
T ss_pred ---------------CCCceEEEEecCcccccCCHHHHH-HHHHHHHHHHhCCEEEEEEECCCCchHHH-HHHHHHHHHH
Confidence 124588999999984421111111 1222221 135799999999976543221 1111222233
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
+...++|+++|+||+|+....... ... . ...+++++||++|.|+++|++
T Consensus 297 l~~~~~piIlV~NK~Dl~~~~~v~----~~~-------------------------~--~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 297 LGAEDIPQLLVYNKIDLLDEPRIE----RLE-------------------------E--GYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred hccCCCCEEEEEEeecCCChHhHH----HHH-------------------------h--CCCCEEEEEccCCCCHHHHHH
Confidence 333478999999999997643211 000 0 124689999999999999999
Q ss_pred HHHHH
Q 020549 307 AVEES 311 (324)
Q Consensus 307 ~i~~~ 311 (324)
.|.+.
T Consensus 346 ~I~~~ 350 (351)
T TIGR03156 346 AIAER 350 (351)
T ss_pred HHHhh
Confidence 98764
No 48
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=9.7e-20 Score=153.85 Aligned_cols=167 Identities=17% Similarity=0.118 Sum_probs=99.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+...+.+++... + ...+...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~------~--~~~i~~~~--------------------------- 45 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFEN------Y--VTNIQGPN--------------------------- 45 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeee------e--EEEEEecC---------------------------
Confidence 379999999999999999999987764433222100 0 00000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~~~~ 226 (324)
.....+.||||||++++.. + ....-..+|++++|+|..+... .. ..|...+ ..
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~-------~-~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~---~~ 101 (187)
T cd04132 46 -------------GKIIELALWDTAGQEEYDR-------L-RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEV---NH 101 (187)
T ss_pred -------------CcEEEEEEEECCCchhHHH-------H-HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence 1134688999999877521 1 1111234689999999865321 11 1232111 11
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHH--HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEW--MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
...+.|+|+|+||+|+......... ......+. ......+++++||++|.||+++
T Consensus 102 -~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 102 -FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA----------------------KKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred -hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH----------------------HHcCCcEEEEccCCCCCCHHHH
Confidence 1347899999999998753210000 00111110 1112237899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 020549 305 FKAVEESAQEFMET 318 (324)
Q Consensus 305 ~~~i~~~~~~~~~~ 318 (324)
|..+.+.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988765543
No 49
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=2.6e-20 Score=157.98 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=93.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|.+|||||||+++|+...+...+.+++ .. .+.. . +...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~-------~~-~~~~------~-----------------~~~~------ 43 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-------ED-SYRK------Q-----------------VVVD------ 43 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-------Hh-hEEE------E-----------------EEEC------
Confidence 48999999999999999999876653221111 00 0000 0 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.||||||++++.. ....+++ .+|++++|+|.... +.....|...+ ....
T Consensus 44 ------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i---~~~~ 100 (190)
T cd04144 44 ------------GQPCMLEVLDTAGQEEYTA------LRDQWIR--EGEGFILVYSITSRSTFERVERFREQI---QRVK 100 (190)
T ss_pred ------------CEEEEEEEEECCCchhhHH------HHHHHHH--hCCEEEEEEECCCHHHHHHHHHHHHHH---HHHh
Confidence 1134688999999877521 1111222 24777777776543 23333343222 2222
Q ss_pred ---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 229 ---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
..+.|+|+|+||+|+........ .....+. ..+ +.+++++||++|.|++++|
T Consensus 101 ~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~----------------------~~~-~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 101 DESAADVPIMIVGNKCDKVYEREVST--EEGAALA----------------------RRL-GCEFIEASAKTNVNVERAF 155 (190)
T ss_pred cccCCCCCEEEEEEChhccccCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHH
Confidence 24689999999999965322100 0011111 111 3679999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
..|.+.+..
T Consensus 156 ~~l~~~l~~ 164 (190)
T cd04144 156 YTLVRALRQ 164 (190)
T ss_pred HHHHHHHHH
Confidence 999987753
No 50
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=1.5e-19 Score=153.58 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
+..+.||||||+..+. ...+.. ..+|.+++|+|+..+....... .+ ......+.|+++|+||+|+
T Consensus 67 ~~~~~i~DtpG~~~~~---------~~~~~~~~~~d~vi~VvD~~~~~~~~~~~--~~---~~~~~~~~~~iiv~NK~Dl 132 (192)
T cd01889 67 NLQITLVDCPGHASLI---------RTIIGGAQIIDLMLLVVDATKGIQTQTAE--CL---VIGEILCKKLIVVLNKIDL 132 (192)
T ss_pred CceEEEEECCCcHHHH---------HHHHHHHhhCCEEEEEEECCCCccHHHHH--HH---HHHHHcCCCEEEEEECccc
Confidence 6789999999985431 111221 3468999999998876544321 11 1222347899999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
..........+.+.. .+...+.. .....+++++||++|.|+++|++.|...++.
T Consensus 133 ~~~~~~~~~~~~~~~-----------------~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 133 IPEEERERKIEKMKK-----------------KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CCHHHHHHHHHHHHH-----------------HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 865433222222221 11100001 0235789999999999999999999988753
No 51
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=1.9e-19 Score=154.31 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=96.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.-++|+|+|++|||||||+|+|++..+... ..++++ ++... ..+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-------------~~~~~t-~~~~~----------------~~~~~---- 85 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAE-------------DQLFAT-LDPTT----------------RRLRL---- 85 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccC-------------Ccccee-cccee----------------EEEEe----
Confidence 347899999999999999999998753211 111111 00000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCch--hHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPM--TFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~--~~~~~~~~~~ 224 (324)
.....+.||||||+.+..... ....+...+. ...+|++++|+|+....... ..|...+
T Consensus 86 ---------------~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l--- 146 (204)
T cd01878 86 ---------------PDGREVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVL--- 146 (204)
T ss_pred ---------------cCCceEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHH---
Confidence 113478999999985431111 1111111111 13468999999997654322 2232222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+...++|+++|+||+|+....... .. ......+++++||++|.|++++
T Consensus 147 ~~~~~~~~~viiV~NK~Dl~~~~~~~---~~---------------------------~~~~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 147 KELGAEDIPMILVLNKIDLLDDEELE---ER---------------------------LEAGRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred HHcCcCCCCEEEEEEccccCChHHHH---HH---------------------------hhcCCCceEEEEcCCCCCHHHH
Confidence 33333468999999999998754321 00 0113468999999999999999
Q ss_pred HHHHHHH
Q 020549 305 FKAVEES 311 (324)
Q Consensus 305 ~~~i~~~ 311 (324)
++.|...
T Consensus 197 ~~~L~~~ 203 (204)
T cd01878 197 LEAIEEL 203 (204)
T ss_pred HHHHHhh
Confidence 9998765
No 52
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.83 E-value=4e-20 Score=156.94 Aligned_cols=173 Identities=16% Similarity=0.183 Sum_probs=98.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|..|||||||+.++....|...+.+++... +.....++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~------~~~~~~~~----------------------------- 47 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN------YSAQTAVD----------------------------- 47 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee------eEEEEEEC-----------------------------
Confidence 3689999999999999999999988765444333110 00000000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchh-HHHhHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMT-FMSNMLYACS 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~-~~~~~~~~~~ 225 (324)
.....+.||||||++++.. ....++ ..+|++|+|.|. ..++.... .|...+ .
T Consensus 48 --------------~~~~~l~i~Dt~G~e~~~~------l~~~~~--~~a~~~ilvydit~~~Sf~~~~~~w~~~i---~ 102 (191)
T cd01875 48 --------------GRTVSLNLWDTAGQEEYDR------LRTLSY--PQTNVFIICFSIASPSSYENVRHKWHPEV---C 102 (191)
T ss_pred --------------CEEEEEEEEECCCchhhhh------hhhhhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHH---H
Confidence 2246788999999988621 111122 235666666665 44444443 343322 1
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
. ...+.|++||+||+|+.+.....+...... +. ......+..+++ .....+++++||++|.||+++|
T Consensus 103 ~-~~~~~piilvgNK~DL~~~~~~~~~~~~~~-~~---~v~~~~~~~~a~--------~~~~~~~~e~SAk~g~~v~e~f 169 (191)
T cd01875 103 H-HCPNVPILLVGTKKDLRNDADTLKKLKEQG-QA---PITPQQGGALAK--------QIHAVKYLECSALNQDGVKEVF 169 (191)
T ss_pred h-hCCCCCEEEEEeChhhhcChhhHHHHhhcc-CC---CCCHHHHHHHHH--------HcCCcEEEEeCCCCCCCHHHHH
Confidence 1 124799999999999965432111110000 00 000001111111 1123579999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
..|++.+..
T Consensus 170 ~~l~~~~~~ 178 (191)
T cd01875 170 AEAVRAVLN 178 (191)
T ss_pred HHHHHHHhc
Confidence 999987743
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.83 E-value=1.1e-19 Score=150.43 Aligned_cols=160 Identities=17% Similarity=0.229 Sum_probs=96.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+...+.+++ +..+... .+...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~------------~~~~~~~------------------~~~~~----- 47 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI------------GVDFKIR------------------TIELD----- 47 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc------------ceeEEEE------------------EEEEC-----
Confidence 689999999999999999999876653221111 0000000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|..+.. .....| +..+...
T Consensus 48 -------------~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~l~~~---~~~~~~~ 103 (166)
T cd01869 48 -------------GKTIKLQIWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQW---LQEIDRY 103 (166)
T ss_pred -------------CEEEEEEEEECCCcHhHHH------HHHHHh--CcCCEEEEEEECcCHHHHHhHHHH---HHHHHHh
Confidence 1135788999999876521 111112 3468999999986522 222223 3222333
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. . ..+.+++++||++|.|++++|..
T Consensus 104 ~~~~~~~iiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 104 ASENVNKLLVGNKCDLTDKRVVD--YSEAQEFA----------------------D-ELGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred CCCCCcEEEEEEChhcccccCCC--HHHHHHHH----------------------H-HcCCeEEEEECCCCcCHHHHHHH
Confidence 33568999999999987543210 01111111 1 12468999999999999999999
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
|.+.+.
T Consensus 159 i~~~~~ 164 (166)
T cd01869 159 MAREIK 164 (166)
T ss_pred HHHHHH
Confidence 998764
No 54
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=1.8e-19 Score=153.99 Aligned_cols=173 Identities=20% Similarity=0.183 Sum_probs=97.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|++|||||||+|+|++..+..+. .++.+ .+.. .
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~-------------~~~~t-~~~~--------------------~----- 48 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGK-------------RPGVT-RKPN--------------------H----- 48 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCC-------------CCcee-eCce--------------------E-----
Confidence 4578999999999999999999987543221 11111 0000 0
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-----hhhHHHHHHHHh-c-cCCcEEEEEEcCCCCCCchhHHHh-
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-----SASGAIITEAFA-S-TFPTVVTYVVDTPRSANPMTFMSN- 219 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~-~-~~~d~iv~vvD~~~~~~~~~~~~~- 219 (324)
....++.+|||||+...... ......+..++. . ..++++++|+|+.........|..
T Consensus 49 ---------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~ 113 (201)
T PRK04213 49 ---------------YDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGR 113 (201)
T ss_pred ---------------EeecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccC
Confidence 00116889999996332100 011112222332 1 235899999998654322122210
Q ss_pred -----HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc--cCceee
Q 020549 220 -----MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVG 292 (324)
Q Consensus 220 -----~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~iv~ 292 (324)
.......+...++|+++|+||+|+.... .+...++. + .++.. ..+. ..++++
T Consensus 114 ~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~---~--------------~~~~~--~~~~~~~~~~~~ 172 (201)
T PRK04213 114 GEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIA---E--------------RLGLY--PPWRQWQDIIAP 172 (201)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHH---H--------------HhcCC--ccccccCCcEEE
Confidence 0111233445689999999999997643 11111111 1 11100 0000 136899
Q ss_pred eccccCCChHHHHHHHHHHHHHHH
Q 020549 293 VSSVSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 293 vSA~~g~gv~~l~~~i~~~~~~~~ 316 (324)
+||++| |++++++.|.+.+++..
T Consensus 173 ~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 173 ISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred EecccC-CHHHHHHHHHHhhcCcc
Confidence 999999 99999999999876543
No 55
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.5e-20 Score=154.98 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=115.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
-...++|+++|.+|+|||-|+.++....|......+| ++.-.+.+..++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTI-----Gvef~t~t~~vd-------------------------- 59 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTI-----GVEFATRTVNVD-------------------------- 59 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccce-----eEEEEeeceeec--------------------------
Confidence 4567899999999999999999999999987665554 232222111111
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.+.++.+||||+||++|. .....+.+.+.+.++||+|.-+..++....|..++ +
T Consensus 60 -----------------~k~vkaqIWDTAGQERyr------AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~EL---R 113 (222)
T KOG0087|consen 60 -----------------GKTVKAQIWDTAGQERYR------AITSAYYRGAVGALLVYDITRRQTFENVERWLKEL---R 113 (222)
T ss_pred -----------------CcEEEEeeecccchhhhc------cccchhhcccceeEEEEechhHHHHHHHHHHHHHH---H
Confidence 335678999999999972 12223344455568888888888887777775444 5
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++++++|+||+||.+...+. .++-+. +++ .++..++++||+.+.||+.+|
T Consensus 114 dhad~nivimLvGNK~DL~~lraV~--te~~k~--------------~Ae---------~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 114 DHADSNIVIMLVGNKSDLNHLRAVP--TEDGKA--------------FAE---------KEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred hcCCCCeEEEEeecchhhhhccccc--hhhhHh--------------HHH---------hcCceEEEecccccccHHHHH
Confidence 5666789999999999998743220 011111 111 135678999999999999999
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
..+...+-
T Consensus 169 ~~~l~~I~ 176 (222)
T KOG0087|consen 169 ERVLTEIY 176 (222)
T ss_pred HHHHHHHH
Confidence 98887664
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=2.4e-19 Score=147.90 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=95.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++|++..+......++. ..-..... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~----- 45 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYA-----LTLYKHNA-------------------------KFE----- 45 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcee-----eEEEEEEE-------------------------EEC-----
Confidence 3799999999999999999998876543211110 00000000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||++++.. .....+ ..+|++++|+|...... ....|...+ ..
T Consensus 46 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~~- 100 (161)
T cd04124 46 -------------GKTILVDFWDTAGQERFQT------MHASYY--HKAHACILVFDVTRKITYKNLSKWYEEL---RE- 100 (161)
T ss_pred -------------CEEEEEEEEeCCCchhhhh------hhHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHH---HH-
Confidence 1245788999999877521 111112 34689999999865432 122232211 11
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+.... . .....+. +. ...+++++||++|.|++++|+.
T Consensus 101 ~~~~~p~ivv~nK~Dl~~~~-~----~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 101 YRPEIPCIVVANKIDLDPSV-T----QKKFNFA----------------------EK-HNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred hCCCCcEEEEEECccCchhH-H----HHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHH
Confidence 12378999999999985321 0 1111010 11 1468999999999999999999
Q ss_pred HHHHHHHH
Q 020549 308 VEESAQEF 315 (324)
Q Consensus 308 i~~~~~~~ 315 (324)
+.+.+.++
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99877653
No 57
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.82 E-value=6e-20 Score=152.48 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=95.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+...+.+++....... . ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------~-----------------------~~~----- 44 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT--------V-----------------------TVD----- 44 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE--------E-----------------------EEC-----
Confidence 4799999999999999999999876433322221100000 0 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
.....+.+|||||+.++...... ....+|++++++|..+...-......++..+.. ..
T Consensus 45 -------------~~~~~l~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~ 102 (171)
T cd00157 45 -------------GKQVNLGLWDTAGQEEYDRLRPL--------SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH-YC 102 (171)
T ss_pred -------------CEEEEEEEEeCCCcccccccchh--------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hC
Confidence 12457889999999875221111 113468999999986532211111111211111 22
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
.+.|+++|+||+|+............. ...+.......+.......+++++||++|.|++++++.|.
T Consensus 103 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 103 PNVPIILVGTKIDLRDDENTLKKLEKG-------------KEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CCCCEEEEEccHHhhhchhhhhhcccC-------------CCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 369999999999998765332110000 0000000000011223334899999999999999999987
Q ss_pred H
Q 020549 310 E 310 (324)
Q Consensus 310 ~ 310 (324)
+
T Consensus 170 ~ 170 (171)
T cd00157 170 R 170 (171)
T ss_pred h
Confidence 5
No 58
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=5.9e-20 Score=152.08 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~~~~~~~p~ilv~NK~Dl 243 (324)
+..+.+|||||+.++.. .....+ ..+|++++|+|+...... ......+. .+......++|+++|+||+|+
T Consensus 49 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~~~~~v~vvd~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 49 NARLKFWDLGGQESLRS------LWDKYY--AECHAIIYVIDSTDRERF-EESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred CEEEEEEECCCChhhHH------HHHHHh--CCCCEEEEEEECchHHHH-HHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 56889999999876521 111112 346899999998653211 11111111 111112357999999999998
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
.......+....+....+ . ......+++++||++|+|++++++.|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 120 PDALSVEEIKEVFQDKAE--------------E------IGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ccCCCHHHHHHHhccccc--------------c------ccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 764322111111110000 0 0012358999999999999999999864
No 59
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.82 E-value=6.9e-20 Score=152.75 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=95.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|+|||||+++|.+..+...+.+++.. .+ ...+. ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~------~~--~~~~~-----------------------~~----- 44 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD------HY--AVSVT-----------------------VG----- 44 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee------ee--EEEEE-----------------------EC-----
Confidence 37999999999999999999988765433222100 00 00000 00
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++..... ..-..+|++++++|..+.-. .. ..|...+ ..
T Consensus 45 -------------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l---~~ 100 (174)
T cd04135 45 -------------GKQYLLGLYDTAGQEDYDRLRP--------LSYPMTDVFLICFSVVNPASFQNVKEEWVPEL---KE 100 (174)
T ss_pred -------------CEEEEEEEEeCCCccccccccc--------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHH---Hh
Confidence 1134578999999877521110 11134578888887754321 11 1232222 22
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
. ..+.|+++|+||+|+.+............ ........+..+.......+++++||++|.||+++|+
T Consensus 101 ~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~ 167 (174)
T cd04135 101 Y-APNVPYLLVGTQIDLRDDPKTLARLNDMK------------EKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFD 167 (174)
T ss_pred h-CCCCCEEEEeEchhhhcChhhHHHHhhcc------------CCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHH
Confidence 2 46799999999999875432211111000 0000011111111122335799999999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.+++.+
T Consensus 168 ~~~~~~ 173 (174)
T cd04135 168 EAILAI 173 (174)
T ss_pred HHHHHh
Confidence 998764
No 60
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=7.7e-20 Score=152.87 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=95.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+.++++..+...+.+++.. .+...+. ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~--------~~~~~~~-----------------------~~----- 45 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD--------NYSANVM-----------------------VD----- 45 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee--------eeEEEEE-----------------------EC-----
Confidence 57999999999999999999988776544332200 0000000 00
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. +... .-..+|++|+|+|..+. +... ..|...+ ..
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~---~~ 101 (174)
T cd01871 46 -------------GKPVNLGLWDTAGQEDYDR-------LRPL-SYPQTDVFLICFSLVSPASFENVRAKWYPEV---RH 101 (174)
T ss_pred -------------CEEEEEEEEECCCchhhhh-------hhhh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence 1245788999999877521 1111 11346888888887542 2222 1343222 22
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
. ..+.|+++|+||+|+.+..... +.+. .. .. ..+..+.+..+...+...++++|||++|.|++++|+
T Consensus 102 ~-~~~~piilvgnK~Dl~~~~~~~---~~~~---~~--~~----~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 168 (174)
T cd01871 102 H-CPNTPIILVGTKLDLRDDKDTI---EKLK---EK--KL----TPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFD 168 (174)
T ss_pred h-CCCCCEEEEeeChhhccChhhH---HHHh---hc--cC----CCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHH
Confidence 1 2479999999999996532111 0010 00 00 000011111111112335889999999999999999
Q ss_pred HHHHH
Q 020549 307 AVEES 311 (324)
Q Consensus 307 ~i~~~ 311 (324)
.+.+.
T Consensus 169 ~l~~~ 173 (174)
T cd01871 169 EAIRA 173 (174)
T ss_pred HHHHh
Confidence 98763
No 61
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.82 E-value=1.5e-19 Score=152.12 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=98.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|.+|||||||++++....+...+.+++... + ...+.+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~------~--~~~~~~~-------------------------- 49 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN------Y--TASFEID-------------------------- 49 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee------e--EEEEEEC--------------------------
Confidence 45789999999999999999999988766544433110 0 0000000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCch-hHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPM-TFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~-~~~~~~~~~~ 224 (324)
.....+.||||+|++++.. +... .-..+|++++|.|... ++... ..|...+
T Consensus 50 ---------------~~~~~l~iwDtaG~e~~~~-------~~~~-~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i--- 103 (182)
T cd04172 50 ---------------TQRIELSLWDTSGSPYYDN-------VRPL-SYPDSDAVLICFDISRPETLDSVLKKWKGEI--- 103 (182)
T ss_pred ---------------CEEEEEEEEECCCchhhHh-------hhhh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---
Confidence 2245789999999877621 1111 1133577777777644 34333 3454333
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHh--cCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAIS--SDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I 301 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v 301 (324)
... ..+.|+|||+||+|+...... . ..+...-. -....+..++++ ....++++|||++|.| |
T Consensus 104 ~~~-~~~~piilVgNK~DL~~~~~~--~----~~~~~~~~~~v~~~~~~~~a~~--------~~~~~~~E~SAk~~~n~v 168 (182)
T cd04172 104 QEF-CPNTKMLLVGCKSDLRTDLTT--L----VELSNHRQTPVSYDQGANMAKQ--------IGAATYIECSALQSENSV 168 (182)
T ss_pred HHH-CCCCCEEEEeEChhhhcChhh--H----HHHHhcCCCCCCHHHHHHHHHH--------cCCCEEEECCcCCCCCCH
Confidence 222 246899999999998642110 0 00000000 000011222222 2224799999999998 9
Q ss_pred HHHHHHHHHHH
Q 020549 302 EAYFKAVEESA 312 (324)
Q Consensus 302 ~~l~~~i~~~~ 312 (324)
+++|..+.+..
T Consensus 169 ~~~F~~~~~~~ 179 (182)
T cd04172 169 RDIFHVATLAC 179 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999998853
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.82 E-value=5.7e-20 Score=156.76 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=96.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+|+|.+|||||||+++|++..+...+.+++ ....+.. .+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~-------~~~~~~~-----------------------~i~~~----- 45 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTE-------HRRLYRP-----------------------AVVLS----- 45 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcc-------cccccee-----------------------EEEEC-----
Confidence 379999999999999999999887754332211 0000000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHH-H-hccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-F-ASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~-~-~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
+....+.||||||+.++. ...+...... . .-..+|++++|+|...... ....|...+ .
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i---~ 107 (198)
T cd04142 46 -------------GRVYDLHILDVPNMQRYP--GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQI---L 107 (198)
T ss_pred -------------CEEEEEEEEeCCCcccCC--ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence 123567899999987642 1111111111 1 1134799999999865321 112222111 1
Q ss_pred HHh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 226 ~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
... ..++|+++|+||+|+....... .+....+.+ . ...++++++||++|.||+
T Consensus 108 ~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~---------------------~-~~~~~~~e~Sak~g~~v~ 163 (198)
T cd04142 108 ETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVR---------------------K-SWKCGYLECSAKYNWHIL 163 (198)
T ss_pred HhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHH---------------------H-hcCCcEEEecCCCCCCHH
Confidence 111 3568999999999996542110 011111110 0 124789999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 303 AYFKAVEESAQ 313 (324)
Q Consensus 303 ~l~~~i~~~~~ 313 (324)
++|..+.+.+.
T Consensus 164 ~lf~~i~~~~~ 174 (198)
T cd04142 164 LLFKELLISAT 174 (198)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 63
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.82 E-value=1.2e-19 Score=149.89 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=96.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+...+.+++ +.+.. ...+.+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~-~~~~~------~~~~~~~---------------------------- 45 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI-GIDYG------VKKVSVR---------------------------- 45 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc-ceeEE------EEEEEEC----------------------------
Confidence 379999999999999999999987654332211 00000 0000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. +...+ -..+|++++|+|.+.. +.....|...+. ...
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~~~-~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~--~~~ 102 (168)
T cd04119 46 -------------NKEVRVNFFDLSGHPEYLE-------VRNEF-YKDTQGVLLVYDVTDRQSFEALDSWLKEMK--QEG 102 (168)
T ss_pred -------------CeEEEEEEEECCccHHHHH-------HHHHH-hccCCEEEEEEECCCHHHHHhHHHHHHHHH--Hhc
Confidence 1245788999999866521 11111 1346899999998653 222233433221 111
Q ss_pred hh----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 228 ~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
.. .+.|+++|+||+|+.+.... .......+.. . ...+++++||++|.|+++
T Consensus 103 ~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 103 GPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAE---------------------S--KGFKYFETSACTGEGVNE 157 (168)
T ss_pred cccccCCCceEEEEEEchhccccccc--CHHHHHHHHH---------------------H--cCCeEEEEECCCCCCHHH
Confidence 11 46899999999999742211 0011111100 1 136799999999999999
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
+|+.|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 64
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.82 E-value=8.6e-20 Score=152.20 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=94.5
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChH
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (324)
|+|+|++|||||||+++|++..+...+.+++... + ...+. ..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~------~--~~~~~-----------------------~~------- 42 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN------Y--SADVE-----------------------VD------- 42 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee------e--eEEEE-----------------------EC-------
Confidence 5899999999999999999987754332221100 0 00000 00
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHHHHHHh
Q 020549 152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYACSILY 228 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~~~~~~ 228 (324)
.....+.||||||+.++.. +... .-..+|++++++|.... +.... .|...+ .. .
T Consensus 43 -----------~~~~~~~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i---~~-~ 99 (174)
T smart00174 43 -----------GKPVELGLWDTAGQEDYDR-------LRPL-SYPDTDVFLICFSVDSPASFENVKEKWYPEV---KH-F 99 (174)
T ss_pred -----------CEEEEEEEEECCCCcccch-------hchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---Hh-h
Confidence 1235688999999877521 1111 11346899999887643 22221 232211 11 1
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+.......+..... .. ..+..+.+..+.......+++++||++|.||+++|..|
T Consensus 100 ~~~~piilv~nK~Dl~~~~~~~~~~~~~----------~~--~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 100 CPNTPIILVGTKLDLREDKSTLRELSKQ----------KQ--EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred CCCCCEEEEecChhhhhChhhhhhhhcc----------cC--CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence 2479999999999997633211000000 00 00001111111122233479999999999999999999
Q ss_pred HHHH
Q 020549 309 EESA 312 (324)
Q Consensus 309 ~~~~ 312 (324)
.+.+
T Consensus 168 ~~~~ 171 (174)
T smart00174 168 IRAA 171 (174)
T ss_pred HHHh
Confidence 8765
No 65
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.82 E-value=6.5e-20 Score=155.10 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=99.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|..|||||||+.+|....+...+.+++ +.. + ....+. ..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~-----~~~-~-~~~~i~-----------------------~~--- 51 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM-----GID-Y-KTTTIL-----------------------LD--- 51 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-----eeE-E-EEEEEE-----------------------EC---
Confidence 45789999999999999999999876643221110 000 0 000000 00
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. ....++ ..+|++|+|+|... ++.....|...+ .
T Consensus 52 ---------------~~~~~l~iwDt~G~~~~~~------l~~~~~--~~ad~illVfD~t~~~Sf~~~~~w~~~i---~ 105 (189)
T cd04121 52 ---------------GRRVKLQLWDTSGQGRFCT------IFRSYS--RGAQGIILVYDITNRWSFDGIDRWIKEI---D 105 (189)
T ss_pred ---------------CEEEEEEEEeCCCcHHHHH------HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence 1246788999999877521 111222 24577777777644 444455554444 2
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.. ..+.|+|||+||+|+.....+. .++.+.+.+ . .+.++++|||++|.||+++|
T Consensus 106 ~~-~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 106 EH-APGVPKILVGNRLHLAFKRQVA--TEQAQAYAE---------------------R--NGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred Hh-CCCCCEEEEEECccchhccCCC--HHHHHHHHH---------------------H--cCCEEEEecCCCCCCHHHHH
Confidence 22 2579999999999996532110 111111111 1 24689999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
+.|.+.+..
T Consensus 160 ~~l~~~i~~ 168 (189)
T cd04121 160 TELARIVLM 168 (189)
T ss_pred HHHHHHHHH
Confidence 999987754
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=7.6e-20 Score=154.96 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=96.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|++|||||||+++|.+..+...+.+++.. .+ ... +...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~------~~--~~~-----------------------i~~~------ 44 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFE------NY--VHD-----------------------IFVD------ 44 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCccee------ee--EEE-----------------------EEEC------
Confidence 6999999999999999999988776433222100 00 000 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEE--EcCCCCCCchh-HHHhHHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYV--VDTPRSANPMT-FMSNMLYACSIL 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~v--vD~~~~~~~~~-~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. ... ..+ ..+|++++| ++...++.... .|...+ ..
T Consensus 45 ------------~~~~~l~i~Dt~G~~~~~~---l~~---~~~--~~a~~~ilv~dv~~~~sf~~~~~~~~~~i---~~- 100 (189)
T cd04134 45 ------------GLHIELSLWDTAGQEEFDR---LRS---LSY--ADTDVIMLCFSVDSPDSLENVESKWLGEI---RE- 100 (189)
T ss_pred ------------CEEEEEEEEECCCChhccc---ccc---ccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH-
Confidence 1245789999999877521 100 111 234566655 55555554433 343322 21
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+.......+...... .. ....+.+..+.......+++++||++|.||+++|..
T Consensus 101 ~~~~~piilvgNK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~ 168 (189)
T cd04134 101 HCPGVKLVLVALKCDLREARNERDDLQRYG-------KH-----TISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTE 168 (189)
T ss_pred hCCCCCEEEEEEChhhccChhhHHHHhhcc-------CC-----CCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHH
Confidence 124799999999999976543221111000 00 000000110111223367999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+..
T Consensus 169 l~~~~~~ 175 (189)
T cd04134 169 AARVALN 175 (189)
T ss_pred HHHHHhc
Confidence 9987753
No 67
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=1.3e-19 Score=152.63 Aligned_cols=185 Identities=21% Similarity=0.214 Sum_probs=103.3
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCc-ccccccccCh
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSLNLFTT 150 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 150 (324)
|+|+|.+|||||||+|+|++.........+......... . ... .-+...... ....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~--~-------~~~--------~~~~~~~~~~~~~~------ 58 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVL--K-------EER--------ERGITIKSGVATFE------ 58 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCC--H-------HHH--------HcCCCeecceEEEe------
Confidence 899999999999999999998766543222211000000 0 000 000000000 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 230 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+.++..... ...+..+...
T Consensus 59 ------------~~~~~~~liDtpG~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~ 113 (189)
T cd00881 59 ------------WPDRRVNFIDTPGHEDFSS------EVIRGL--SVSDGAILVVDANEGVQPQT-----REHLRIAREG 113 (189)
T ss_pred ------------eCCEEEEEEeCCCcHHHHH------HHHHHH--HhcCEEEEEEECCCCCcHHH-----HHHHHHHHHC
Confidence 1256789999999876411 111112 24689999999987654332 1112334446
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
+.|+++|+||+|+............+....+...... .+... .......+++++||++|.|+++++..|..
T Consensus 114 ~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 114 GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS-------TKEEG--TRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc-------hhhhh--cccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 8999999999999875433333333322111100000 00000 00123578999999999999999999998
Q ss_pred HHH
Q 020549 311 SAQ 313 (324)
Q Consensus 311 ~~~ 313 (324)
.++
T Consensus 185 ~l~ 187 (189)
T cd00881 185 HLP 187 (189)
T ss_pred hCC
Confidence 764
No 68
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=3.4e-19 Score=152.67 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHHHHhhcC-CCeEEEeecccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl 243 (324)
..+.||||||+.++.. .+...+ ..+|++++|+|+..+ ...+... .+ ..+...+ .|+++|+||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~------~~~~~~--~~~D~~llVvd~~~~~~~~~t~~--~l---~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMA------TMLSGA--AVMDGALLLIAANEPCPQPQTSE--HL---AALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHH------HHHHhh--hcCCEEEEEEECCCCCCCcchHH--HH---HHHHHcCCCcEEEEEEchhc
Confidence 6789999999755411 111111 346999999999874 3333211 12 1222233 478999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~ 315 (324)
..........+.+..+.. .+ ....+++++||++|+|+++|++.|.+.+++.
T Consensus 150 ~~~~~~~~~~~~i~~~~~---------------------~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 150 VKEEQALENYEQIKKFVK---------------------GTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred cCHHHHHHHHHHHHHHHh---------------------ccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 875433333333321111 11 1346899999999999999999999877653
No 69
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=3.9e-20 Score=154.75 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=96.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|+|||||+.+++...|...+.+++.. . +...+. .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~-~-------~~~~~~-----------------------~------ 44 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-N-------FSANVS-----------------------V------ 44 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee-e-------eEEEEE-----------------------E------
Confidence 57999999999999999999998886544433310 0 000000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEc--CCCCCCch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD--TPRSANPM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD--~~~~~~~~-~~~~~~~~~~~~ 226 (324)
.....++.||||+|++++.. .. ..+++ .++.+++|.| ...++... ..|...+ ..
T Consensus 45 ------------~~~~v~l~i~Dt~G~~~~~~--~~----~~~~~--~a~~~ilvyd~~~~~Sf~~~~~~w~~~i---~~ 101 (176)
T cd04133 45 ------------DGNTVNLGLWDTAGQEDYNR--LR----PLSYR--GADVFVLAFSLISRASYENVLKKWVPEL---RH 101 (176)
T ss_pred ------------CCEEEEEEEEECCCCccccc--cc----hhhcC--CCcEEEEEEEcCCHHHHHHHHHHHHHHH---HH
Confidence 02246789999999988621 11 11222 3455555555 45555554 4454333 22
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHH---HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEW---MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
.. .+.|+|||+||+|+.+....... ...+. ......++ ......++++|||++|.||++
T Consensus 102 ~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~---------~~~~~~~a--------~~~~~~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 102 YA-PNVPIVLVGTKLDLRDDKQYLADHPGASPIT---------TAQGEELR--------KQIGAAAYIECSSKTQQNVKA 163 (176)
T ss_pred hC-CCCCEEEEEeChhhccChhhhhhccCCCCCC---------HHHHHHHH--------HHcCCCEEEECCCCcccCHHH
Confidence 22 47999999999999653210000 00000 00011111 111223689999999999999
Q ss_pred HHHHHHHHH
Q 020549 304 YFKAVEESA 312 (324)
Q Consensus 304 l~~~i~~~~ 312 (324)
+|..+++.+
T Consensus 164 ~F~~~~~~~ 172 (176)
T cd04133 164 VFDAAIKVV 172 (176)
T ss_pred HHHHHHHHH
Confidence 999999875
No 70
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.82 E-value=5.3e-20 Score=152.66 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=95.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++++...+...+.+++-. ........ .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~---~~~~~~~~---------------------------~------ 44 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV---EVHPLDFH---------------------------T------ 44 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee---EEEEEEEE---------------------------E------
Confidence 47999999999999999999976654332221100 00000000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
......+.+|||||+.++.. ... ..+ ..+|++|+|+|......- ......+..+....
T Consensus 45 ------------~~~~~~l~i~Dt~G~~~~~~---~~~---~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~- 102 (166)
T cd00877 45 ------------NRGKIRFNVWDTAGQEKFGG---LRD---GYY--IGGQCAIIMFDVTSRVTY-KNVPNWHRDLVRVC- 102 (166)
T ss_pred ------------CCEEEEEEEEECCCChhhcc---ccH---HHh--cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhC-
Confidence 01245788999999877521 111 111 236888999998653211 11111222222222
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
.+.|+++|+||+|+.......+. ..+. . ....+++++||++|.|++++|+.|.
T Consensus 103 ~~~piiiv~nK~Dl~~~~~~~~~-~~~~-------------------------~-~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 103 GNIPIVLCGNKVDIKDRKVKAKQ-ITFH-------------------------R-KKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred CCCcEEEEEEchhcccccCCHHH-HHHH-------------------------H-HcCCEEEEEeCCCCCChHHHHHHHH
Confidence 27999999999999743211110 0000 1 1346899999999999999999999
Q ss_pred HHHHH
Q 020549 310 ESAQE 314 (324)
Q Consensus 310 ~~~~~ 314 (324)
+.+..
T Consensus 156 ~~~~~ 160 (166)
T cd00877 156 RKLLG 160 (166)
T ss_pred HHHHh
Confidence 88765
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=6.1e-20 Score=151.86 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=95.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|++|||||||+++|.+..+...+..++ +.. .. . . .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~-----~~~-~~-~-----~------------------~~~~~---- 48 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI-----GVD-FT-M-----K------------------TLEIE---- 48 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc-----ceE-EE-E-----E------------------EEEEC----
Confidence 4789999999999999999998876554221111 000 00 0 0 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+ ..+|++++++|..+.. .....|...+ ..
T Consensus 49 --------------~~~~~l~i~D~~G~~~~~~------~~~~~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i---~~ 103 (165)
T cd01864 49 --------------GKRVKLQIWDTAGQERFRT------ITQSYY--RSANGAIIAYDITRRSSFESVPHWIEEV---EK 103 (165)
T ss_pred --------------CEEEEEEEEECCChHHHHH------HHHHHh--ccCCEEEEEEECcCHHHHHhHHHHHHHH---HH
Confidence 1124788999999866411 111111 3468999999986542 2222333222 23
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+...... ..+....+. .......++++||++|.|++++|+
T Consensus 104 ~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 104 YGASNVVLLLIGNKCDLEEQREV--LFEEACTLA----------------------EKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred hCCCCCcEEEEEECccccccccc--CHHHHHHHH----------------------HHcCCcEEEEEECCCCCCHHHHHH
Confidence 33457899999999999754321 011111111 112335789999999999999999
Q ss_pred HHHHH
Q 020549 307 AVEES 311 (324)
Q Consensus 307 ~i~~~ 311 (324)
.|.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99865
No 72
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.82 E-value=7.2e-20 Score=151.63 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=96.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+...+..++ + ..+.. . .+...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~-~-------~~~~~----~------------------~~~~~----- 47 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI-G-------VEFGT----R------------------IIEVN----- 47 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccc-c-------eeEEE----E------------------EEEEC-----
Confidence 689999999999999999999886654322111 0 00000 0 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..+|.+++|+|.... +.....| +..+...
T Consensus 48 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~---~~~~~~~ 103 (166)
T cd04122 48 -------------GQKIKLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRRSTYNHLSSW---LTDARNL 103 (166)
T ss_pred -------------CEEEEEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence 1245788999999877521 111222 246889999998653 2222233 2222233
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. . ....+++++||++|.|++++|..
T Consensus 104 ~~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 104 TNPNTVIFLIGNKADLEAQRDVT--YEEAKQFA----------------------D-ENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred CCCCCeEEEEEECcccccccCcC--HHHHHHHH----------------------H-HcCCEEEEEECCCCCCHHHHHHH
Confidence 34568999999999997643210 01111111 1 12468999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
+.+.+
T Consensus 159 l~~~~ 163 (166)
T cd04122 159 TAKKI 163 (166)
T ss_pred HHHHH
Confidence 98765
No 73
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.82 E-value=2.1e-19 Score=151.46 Aligned_cols=167 Identities=15% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||++++++..+... .+ +.. ++... +..
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~-------t~~-------~~~~~------------------~~~---- 44 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VP-------TKG-------FNTEK------------------IKV---- 44 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CC-------ccc-------cceeE------------------EEe----
Confidence 357899999999999999999987655321 10 000 00000 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~ 226 (324)
.. .......+.||||||++++. . .....+ ..+|++++|+|+...... ......+. ....
T Consensus 45 -~~----------~~~~~~~l~l~Dt~G~~~~~--~----~~~~~~--~~~d~ii~v~D~~~~~~~-~~~~~~~~~i~~~ 104 (183)
T cd04152 45 -SL----------GNSKGITFHFWDVGGQEKLR--P----LWKSYT--RCTDGIVFVVDSVDVERM-EEAKTELHKITRF 104 (183)
T ss_pred -ec----------cCCCceEEEEEECCCcHhHH--H----HHHHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHHhh
Confidence 00 00235678999999986641 1 111111 346899999998664211 11111111 1122
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l 304 (324)
....++|+++|+||+|+.......+. ..+..+. .+ ....+++++||++|.|++++
T Consensus 105 ~~~~~~p~iiv~NK~D~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 105 SENQGVPVLVLANKQDLPNALSVSEV-EKLLALH----------------------ELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred hhcCCCcEEEEEECcCccccCCHHHH-HHHhCcc----------------------ccCCCCceEEEEeecccCCCHHHH
Confidence 23457999999999998642111111 1111000 01 11246899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
+..|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 74
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=4.9e-20 Score=152.00 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=92.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|.+|||||||++++++..+.....+++ ... +...+ ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-------~~~-~~~~~-----------------------~~~----- 45 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-------EDF-YRKEI-----------------------EVD----- 45 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-------hhe-EEEEE-----------------------EEC-----
Confidence 579999999999999999999887654322111 000 00000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||++++.. . ...+++ .+|++++|+|..+. +.....|...+. ...
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~--~----~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~~--~~~ 102 (163)
T cd04176 46 -------------SSPSVLEILDTAGTEQFAS--M----RDLYIK--NGQGFIVVYSLVNQQTFQDIKPMRDQIV--RVK 102 (163)
T ss_pred -------------CEEEEEEEEECCCcccccc--h----HHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence 1134678999999877622 1 111222 35778888776542 233333322221 111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+........ .....+. ... ..+++++||++|.|++++|..
T Consensus 103 ~~~~~piviv~nK~Dl~~~~~~~~--~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 103 GYEKVPIILVGNKVDLESEREVSS--AEGRALA----------------------EEW-GCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred CCCCCCEEEEEECccchhcCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHHHH
Confidence 225799999999999865321100 0011110 111 368899999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 158 l~~~l 162 (163)
T cd04176 158 IVRQM 162 (163)
T ss_pred HHHhc
Confidence 98653
No 75
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=1.1e-19 Score=151.10 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=90.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||+++|....+.. .. |++ .++... +.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~-------~t~-------g~~~~~------------------~~----- 49 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TI-------PTV-------GFNVET------------------VT----- 49 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-cc-------CCc-------ccceEE------------------EE-----
Confidence 45789999999999999999998754431 11 111 000000 00
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~ 226 (324)
.....+.||||||+.++. .. ....+ ..+|+++||+|+.....- ..+...+. .+..
T Consensus 50 ---------------~~~~~~~l~Dt~G~~~~~--~~----~~~~~--~~a~~ii~v~D~t~~~s~-~~~~~~~~~~~~~ 105 (168)
T cd04149 50 ---------------YKNVKFNVWDVGGQDKIR--PL----WRHYY--TGTQGLIFVVDSADRDRI-DEARQELHRIIND 105 (168)
T ss_pred ---------------ECCEEEEEEECCCCHHHH--HH----HHHHh--ccCCEEEEEEeCCchhhH-HHHHHHHHHHhcC
Confidence 125678999999987651 11 11112 346899999998763211 11111111 1111
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|++||+||+|+.......+..+... +.. ......+++++||++|.|++++|.
T Consensus 106 ~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~-~~~---------------------~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 106 REMRDALLLVFANKQDLPDAMKPHEIQEKLG-LTR---------------------IRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred HhhcCCcEEEEEECcCCccCCCHHHHHHHcC-CCc---------------------cCCCcEEEEEeeCCCCCChHHHHH
Confidence 1124689999999999864311111111100 000 001124689999999999999999
Q ss_pred HHHH
Q 020549 307 AVEE 310 (324)
Q Consensus 307 ~i~~ 310 (324)
.|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 8864
No 76
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2.9e-19 Score=167.32 Aligned_cols=167 Identities=23% Similarity=0.321 Sum_probs=102.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
-|+|+|.||||||||+++|++.... +..+|++|. .++.|.+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-------------Ia~ypfTTl------------------~PnlG~v~~------ 202 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-------------IANYHFTTL------------------VPNLGVVET------ 202 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-------------cccCCccee------------------ceEEEEEEE------
Confidence 6999999999999999999986532 344555541 112222210
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.+...+ ..++....+.+ ..++++++|+|++.. ..+...+..+...+..+
T Consensus 203 ------------~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y 268 (424)
T PRK12297 203 ------------DDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLY 268 (424)
T ss_pred ------------eCCceEEEEECCCCcccccccchHHHHHHHHH--hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhh
Confidence 11467999999998653211 12233333322 346899999998643 12222222222222222
Q ss_pred hh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 228 ~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.. .++|+++|+||+|+..... ..+.+. +.+. .+++++||++++|+++|+
T Consensus 269 ~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~-------------------------~~l~-~~i~~iSA~tgeGI~eL~ 319 (424)
T PRK12297 269 NPRLLERPQIVVANKMDLPEAEE---NLEEFK-------------------------EKLG-PKVFPISALTGQGLDELL 319 (424)
T ss_pred chhccCCcEEEEEeCCCCcCCHH---HHHHHH-------------------------HHhC-CcEEEEeCCCCCCHHHHH
Confidence 21 4789999999999853321 111111 1122 579999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 306 KAVEESAQEFME 317 (324)
Q Consensus 306 ~~i~~~~~~~~~ 317 (324)
+.|.+.+...+.
T Consensus 320 ~~L~~~l~~~~~ 331 (424)
T PRK12297 320 YAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHhCcc
Confidence 999998876543
No 77
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=3.2e-19 Score=146.66 Aligned_cols=162 Identities=23% Similarity=0.345 Sum_probs=98.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|+|||||+|+|++..... .... +.++ +... .+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~------~~~~------~~~~----~~~~--------------~~~~~----- 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI------VSPK------PQTT----RNRI--------------RGIYT----- 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe------ccCC------CCce----eceE--------------EEEEE-----
Confidence 4679999999999999999998764321 1111 1111 0000 00110
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.+|||||+...... ....+..... ...+|++++++|+.........+ ....
T Consensus 48 --------------~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~-----~~~~ 106 (168)
T cd04163 48 --------------DDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEF-----ILEL 106 (168)
T ss_pred --------------cCCeEEEEEECCCCCcchHH--HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHH-----HHHH
Confidence 12467899999998765221 1111111111 13468999999998774333322 1123
Q ss_pred HhhcCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
+...+.|+++|+||+|+.. .....++...+. ...+..+++++||+++.|+++++
T Consensus 107 ~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 107 LKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK-------------------------ELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred HHHhCCCEEEEEEchhccccHHHHHHHHHHHH-------------------------hccCCCceEEEEeccCCChHHHH
Confidence 3445789999999999984 333333322222 12235789999999999999999
Q ss_pred HHHHHH
Q 020549 306 KAVEES 311 (324)
Q Consensus 306 ~~i~~~ 311 (324)
+.|.+.
T Consensus 162 ~~l~~~ 167 (168)
T cd04163 162 EEIVKY 167 (168)
T ss_pred HHHHhh
Confidence 999764
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=1.2e-19 Score=149.66 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
...+.+|||||+..+.. .....+ ..+|++++|+|..+.. .....|...+ ... ..+.|+++|+||+|
T Consensus 51 ~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~---~~~-~~~~p~ilv~nK~D 118 (164)
T cd04101 51 TVELFIFDSAGQELYSD------MVSNYW--ESPSVFILVYDVSNKASFENCSRWVNKV---RTA-SKHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEEECCCHHHHHH------HHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHH---HHh-CCCCCEEEEEECcc
Confidence 46789999999765411 111122 3569999999986532 1122332211 111 14689999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
+.+........ ...+ ....+.+++++||++|.|++++|+.|.+.+
T Consensus 119 l~~~~~~~~~~--~~~~-----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 119 LADKAEVTDAQ--AQAF-----------------------AQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cccccCCCHHH--HHHH-----------------------HHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 97543211100 0100 001246799999999999999999998764
No 79
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=4e-19 Score=147.07 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+.++.||||||+..+... .... ...+|++++|+|+.++.....+ ..+..+...++|+++|+||+|+.
T Consensus 49 ~~~~~iiDtpG~~~~~~~------~~~~--~~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTNM------RARG--ASLTDIAILVVAADDGVMPQTI-----EAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHHH------HHHH--HhhcCEEEEEEECCCCccHHHH-----HHHHHHHHcCCCEEEEEEceecc
Confidence 568999999998664210 1111 1346999999999876543331 11233445789999999999987
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.... ......+..+... ..+.+....+++++||++|.|+++|++.|.+...
T Consensus 116 ~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 116 NANP-ERVKNELSELGLQ-----------------GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccH-HHHHHHHHHhhcc-----------------ccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 5321 1111111110000 0001223468999999999999999999987653
No 80
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=3.7e-19 Score=154.67 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=99.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|.+|||||||+++|++..|...+.+++... +...+.+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~--------~~~~i~~~-------------------------- 57 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--------YTAGLETE-------------------------- 57 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee--------eEEEEEEC--------------------------
Confidence 45789999999999999999999988776544433110 00000000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCc-hhHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANP-MTFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~-~~~~~~~~~~~ 224 (324)
.....+.||||||++++.. ....++ ..+|++++|.|... ++.. ...|...+
T Consensus 58 ---------------~~~v~l~iwDTaG~e~~~~------~~~~~~--~~ad~vIlVyDit~~~Sf~~~~~~w~~~i--- 111 (232)
T cd04174 58 ---------------EQRVELSLWDTSGSPYYDN------VRPLCY--SDSDAVLLCFDISRPETVDSALKKWKAEI--- 111 (232)
T ss_pred ---------------CEEEEEEEEeCCCchhhHH------HHHHHc--CCCcEEEEEEECCChHHHHHHHHHHHHHH---
Confidence 2256789999999877621 111122 34577777777654 3333 23454333
Q ss_pred HHHhhcCCCeEEEeeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccC-ceeeeccccCC-Ch
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSVGVSSVSGA-GI 301 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~iv~vSA~~g~-gv 301 (324)
... ..+.|+|||+||+|+..... ..+...... .. -..+.+..++++ . ++ .+++|||++|+ ||
T Consensus 112 ~~~-~~~~piilVgNK~DL~~~~~~~~~l~~~~~---~~--Vs~~e~~~~a~~--------~-~~~~~~EtSAktg~~~V 176 (232)
T cd04174 112 MDY-CPSTRILLIGCKTDLRTDLSTLMELSNQKQ---AP--ISYEQGCALAKQ--------L-GAEVYLECSAFTSEKSI 176 (232)
T ss_pred HHh-CCCCCEEEEEECcccccccchhhhhccccC---Cc--CCHHHHHHHHHH--------c-CCCEEEEccCCcCCcCH
Confidence 222 24689999999999864211 000000000 00 000011222222 1 34 58999999998 89
Q ss_pred HHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQE 314 (324)
Q Consensus 302 ~~l~~~i~~~~~~ 314 (324)
+++|..++..+..
T Consensus 177 ~e~F~~~~~~~~~ 189 (232)
T cd04174 177 HSIFRSASLLCLN 189 (232)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 81
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=2.1e-19 Score=147.13 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.++.............+....+|++++|+|+....... .+ . ..+...++|+++|+||+|+.
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~---~---~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL-YL---T---LQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH-HH---H---HHHHHcCCCEEEEEehhhhc
Confidence 35789999999987633222222222233324679999999987632211 11 1 23344689999999999997
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
.........+.+ . . ..+.+++++||++|.|++++++.|...+
T Consensus 115 ~~~~~~~~~~~~---~----------------------~-~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 115 EKRGIKIDLDKL---S----------------------E-LLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccccchhhHHHH---H----------------------H-hhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 654322111111 1 1 1146899999999999999999998764
No 82
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.81 E-value=3e-19 Score=148.29 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=96.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|++..+...+..++ +..+.... +...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~------------~~~~~~~~------------------~~~~---- 49 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------------GVEFGARM------------------ITID---- 49 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc------------ceeEEEEE------------------EEEC----
Confidence 3689999999999999999999876654322111 00000000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||++++.. .....+ ..+|++++|+|.... +.....| +..+..
T Consensus 50 --------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~il~v~d~~~~~s~~~~~~~---~~~~~~ 104 (168)
T cd01866 50 --------------GKQIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLTSW---LEDARQ 104 (168)
T ss_pred --------------CEEEEEEEEECCCcHHHHH------HHHHHh--ccCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence 1134788999999766411 111122 346899999998642 1122222 222222
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+....... .+....+.. . ...+++++||++|.|++++|.
T Consensus 105 ~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 105 HSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAK---------------------E--HGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred hCCCCCcEEEEEECcccccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence 223578999999999997532110 011111110 1 246799999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.+.+.+.
T Consensus 160 ~~~~~~~ 166 (168)
T cd01866 160 NTAKEIY 166 (168)
T ss_pred HHHHHHH
Confidence 9988764
No 83
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=7.5e-20 Score=158.19 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=97.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+...+.+++. +. .+...+.+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~-----~d--~~~~~i~~~---------------------------- 45 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG-----LD--FFSKRVTLP---------------------------- 45 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee-----EE--EEEEEEEeC----------------------------
Confidence 3799999999999999999998876544332220 00 000000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
. .....+.||||||+..+.. .....+ ..+|++++|+|.... +.....|...+......
T Consensus 46 ~------------~~~~~~~i~Dt~G~~~~~~------l~~~~~--~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~ 105 (215)
T cd04109 46 G------------NLNVTLQVWDIGGQSIGGK------MLDKYI--YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKS 105 (215)
T ss_pred C------------CCEEEEEEEECCCcHHHHH------HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc
Confidence 0 1135788999999866521 111122 346899999997653 33333343333211100
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. .. .+.+++++||++|+||+++|+.
T Consensus 106 ~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 106 SETQPLVVLVGNKTDLEHNRTVK--DDKHARFA----------------------QA-NGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred cCCCceEEEEEECcccccccccC--HHHHHHHH----------------------HH-cCCEEEEEECCCCCCHHHHHHH
Confidence 12346899999999997532110 01111111 11 1367899999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9988754
No 84
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.81 E-value=1.2e-19 Score=149.41 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=93.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+...+.+++. .. +.. .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-------~~-~~~-----------------------~~~~~----- 44 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-------DS-YRK-----------------------KVVLD----- 44 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-------hh-EEE-----------------------EEEEC-----
Confidence 4799999999999999999998776543221110 00 000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..++.+++++|.... +.....|...+. ...
T Consensus 45 -------------~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~--~~~ 101 (164)
T cd04139 45 -------------GEDVQLNILDTAGQEDYAA------IRDNYH--RSGEGFLLVFSITDMESFTATAEFREQIL--RVK 101 (164)
T ss_pred -------------CEEEEEEEEECCChhhhhH------HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence 1245688999999876521 111122 234677777776432 222233322121 111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+...... .......+.+ + ...+++++||++|.|++++|..
T Consensus 102 ~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 102 DDDNVPLLLVGNKCDLEDKRQV--SSEEAANLAR---------------------Q--WGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred CCCCCCEEEEEEcccccccccc--CHHHHHHHHH---------------------H--hCCeEEEeeCCCCCCHHHHHHH
Confidence 2357999999999999762111 0011111110 1 1368999999999999999999
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
|.+.+.
T Consensus 157 l~~~~~ 162 (164)
T cd04139 157 LVREIR 162 (164)
T ss_pred HHHHHH
Confidence 987664
No 85
>PTZ00369 Ras-like protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=153.76 Aligned_cols=162 Identities=13% Similarity=0.179 Sum_probs=96.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|.+|||||||++++++..+...+.+++ . ..+... +...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~-------~-~~~~~~-----------------------~~~~---- 49 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI-------E-DSYRKQ-----------------------CVID---- 49 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch-------h-hEEEEE-----------------------EEEC----
Confidence 4789999999999999999999887653322111 0 000000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. ....++ ..+|++++|+|..+.. .....|...+. ..
T Consensus 50 --------------~~~~~l~i~Dt~G~~~~~~------l~~~~~--~~~d~iilv~D~s~~~s~~~~~~~~~~i~--~~ 105 (189)
T PTZ00369 50 --------------EETCLLDILDTAGQEEYSA------MRDQYM--RTGQGFLCVYSITSRSSFEEIASFREQIL--RV 105 (189)
T ss_pred --------------CEEEEEEEEeCCCCccchh------hHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHH--Hh
Confidence 1234678999999887621 111122 2357888888876532 22333322221 11
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+.+...... .....+. ... ..+++++||++|.||+++|.
T Consensus 106 ~~~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~----------------------~~~-~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 106 KDKDRVPMILVGNKCDLDSERQVST--GEGQELA----------------------KSF-GIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred cCCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------HHh-CCEEEEeeCCCCCCHHHHHH
Confidence 2234789999999999865321110 0011000 111 36899999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
.|.+.+..
T Consensus 161 ~l~~~l~~ 168 (189)
T PTZ00369 161 ELVREIRK 168 (189)
T ss_pred HHHHHHHH
Confidence 99987754
No 86
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=2.9e-19 Score=149.92 Aligned_cols=169 Identities=13% Similarity=0.140 Sum_probs=95.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||++++.+..+...+.+++.. .+ ...+.+.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~------~~--~~~~~~~---------------------------- 45 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFE------NY--TASFEID---------------------------- 45 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEE------EE--EEEEEEC----------------------------
Confidence 57999999999999999999998876544433310 00 0000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCC--CCCCch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP--RSANPM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~--~~~~~~-~~~~~~~~~~~~ 226 (324)
.....+.||||||++++.. . ....+ ..+|++++|.|.. .++... ..|...+ ..
T Consensus 46 -------------~~~~~l~iwDt~G~~~~~~--~----~~~~~--~~a~~~ilvfdit~~~Sf~~~~~~w~~~i---~~ 101 (178)
T cd04131 46 -------------EQRIELSLWDTSGSPYYDN--V----RPLCY--PDSDAVLICFDISRPETLDSVLKKWRGEI---QE 101 (178)
T ss_pred -------------CEEEEEEEEECCCchhhhh--c----chhhc--CCCCEEEEEEECCChhhHHHHHHHHHHHH---HH
Confidence 2246788999999876521 0 01111 2356777777764 344442 4454333 22
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-hHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v~~l~ 305 (324)
. ..+.|+|+|+||+|+...... ...+.... ...-..+.+..++++ ....++++|||++|+| |+++|
T Consensus 102 ~-~~~~~iilVgnK~DL~~~~~~---~~~~~~~~-~~~v~~~e~~~~a~~--------~~~~~~~E~SA~~~~~~v~~~F 168 (178)
T cd04131 102 F-CPNTKVLLVGCKTDLRTDLST---LMELSHQR-QAPVSYEQGCAIAKQ--------LGAEIYLECSAFTSEKSVRDIF 168 (178)
T ss_pred H-CCCCCEEEEEEChhhhcChhH---HHHHHhcC-CCCCCHHHHHHHHHH--------hCCCEEEECccCcCCcCHHHHH
Confidence 2 247899999999998642110 00000000 000000011222222 2223789999999995 99999
Q ss_pred HHHHHH
Q 020549 306 KAVEES 311 (324)
Q Consensus 306 ~~i~~~ 311 (324)
..+.+.
T Consensus 169 ~~~~~~ 174 (178)
T cd04131 169 HVATMA 174 (178)
T ss_pred HHHHHH
Confidence 999885
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.81 E-value=1.1e-19 Score=149.68 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=91.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|+|||||+++|++..+...+..++. . .+.. . .+.. .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~-----~---~~~~----~------------------~~~~-----~ 45 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG-----V---DFLE----K------------------QIFL-----R 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE-----E---EEEE----E------------------EEEE-----c
Confidence 3799999999999999999998766543222110 0 0000 0 0000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.......+.||||||++++.. .....+ ..+|.+++|+|..+ ++.....|...+ . .
T Consensus 46 -----------~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~~v~v~d~~~~~s~~~l~~~~~~~---~-~ 102 (162)
T cd04106 46 -----------QSDEDVRLMLWDTAGQEEFDA------ITKAYY--RGAQACILVFSTTDRESFEAIESWKEKV---E-A 102 (162)
T ss_pred -----------CCCCEEEEEEeeCCchHHHHH------hHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHH---H-H
Confidence 001245789999999876521 112222 23567777777643 222223332222 1 1
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+....... .++...+. .. .+.+++++||++|.|++++++.
T Consensus 103 ~~~~~p~iiv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 103 ECGDIPMVLVQTKIDLLDQAVIT--NEEAEALA----------------------KR-LQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred hCCCCCEEEEEEChhcccccCCC--HHHHHHHH----------------------HH-cCCeEEEEECCCCCCHHHHHHH
Confidence 22479999999999997643211 01111111 11 1358999999999999999999
Q ss_pred HHH
Q 020549 308 VEE 310 (324)
Q Consensus 308 i~~ 310 (324)
|..
T Consensus 158 l~~ 160 (162)
T cd04106 158 LAE 160 (162)
T ss_pred HHH
Confidence 875
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.81 E-value=1.5e-19 Score=150.41 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
...+.+|||||+.++. . .....+ ..+|+++||+|.+.. +.....|...+ +......+.|+++|+||+|
T Consensus 42 ~~~i~l~Dt~G~~~~~--~----~~~~~~--~~ad~ii~V~D~s~~~s~~~~~~~~~~~--~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 42 NLKFTIWDVGGKHKLR--P----LWKHYY--LNTQAVVFVVDSSHRDRVSEAHSELAKL--LTEKELRDALLLIFANKQD 111 (169)
T ss_pred CEEEEEEECCCChhcc--h----HHHHHh--ccCCEEEEEEeCCcHHHHHHHHHHHHHH--hcChhhCCCCEEEEEeCcC
Confidence 5678999999987651 1 111122 236899999998653 22222221111 1111123589999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHHHHHHHHHHHHHh
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMET 318 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~~ 318 (324)
+.......+..+... +. .. .....++++||++|.||+++|+.|.+.+.+..+.
T Consensus 112 l~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 112 VAGALSVEEMTELLS-LH----------------------KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred cccCCCHHHHHHHhC-Cc----------------------cccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence 864311111111000 00 00 0123688999999999999999999888776543
No 89
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=6.4e-19 Score=146.03 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=94.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|.+|||||||+++|.+..+......+ ........ ..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-------~~~~~~~~------------------------~~-------- 42 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-------LPEITIPA------------------------DV-------- 42 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCc-------ccceEeee------------------------ee--------
Confidence 7999999999999999999988765321100 00000000 00
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch---hHHHhHHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM---TFMSNMLYACSIL 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~---~~~~~~~~~~~~~ 227 (324)
.....++.||||||+.++.. .....+ ..+|++++|+|......-. ..|...+ ...
T Consensus 43 -----------~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i---~~~ 100 (166)
T cd01893 43 -----------TPERVPTTIVDTSSRPQDRA------NLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLI---RRL 100 (166)
T ss_pred -----------cCCeEEEEEEeCCCchhhhH------HHhhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHH---HHh
Confidence 02356789999999866421 112222 3468889999876532211 1343222 222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..+.|+++|+||+|+.+........+....+.. .+....+++++||++|.|++++|..
T Consensus 101 -~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 101 -GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN---------------------EFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred -CCCCCEEEEEEchhcccccchhHHHHHHHHHHH---------------------HHhcccEEEEeccccccCHHHHHHH
Confidence 247999999999999765422111111111110 1222247999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
+.+.+
T Consensus 159 ~~~~~ 163 (166)
T cd01893 159 AQKAV 163 (166)
T ss_pred HHHHh
Confidence 98765
No 90
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.81 E-value=3.7e-20 Score=145.64 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=111.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|.|||.+|+|||||+.++....|......+| +.|.-+..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI-GvDFkvk~------------------------------------ 52 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI-GVDFKVKV------------------------------------ 52 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCcee-eeeEEEEE------------------------------------
Confidence 45899999999999999999999988875432222 11111100
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
+...+...++-||||+||++|.. ....+++.+..-++||.|..++.+...+.|..++.. +.
T Consensus 53 -----------m~vdg~~~KlaiWDTAGqErFRt------LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~--Ys 113 (209)
T KOG0080|consen 53 -----------MQVDGKRLKLAIWDTAGQERFRT------LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL--YS 113 (209)
T ss_pred -----------EEEcCceEEEEEEeccchHhhhc------cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHh--hc
Confidence 00014467889999999999822 112233444455889999999999888888766642 22
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++-.++|+||+|..+...+ ..- .+..+++++ .+-++++|||+.+||...|+.
T Consensus 114 tn~diikmlVgNKiDkes~R~V----~re------------EG~kfAr~h---------~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 114 TNPDIIKMLVGNKIDKESERVV----DRE------------EGLKFARKH---------RCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred CCccHhHhhhcccccchhcccc----cHH------------HHHHHHHhh---------CcEEEEcchhhhccHHHHHHH
Confidence 3456777899999997643211 111 122333333 245788999999999999999
Q ss_pred HHHHHHHH
Q 020549 308 VEESAQEF 315 (324)
Q Consensus 308 i~~~~~~~ 315 (324)
+++.+.+-
T Consensus 169 lveKIi~t 176 (209)
T KOG0080|consen 169 LVEKIIET 176 (209)
T ss_pred HHHHHhcC
Confidence 99988653
No 91
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=9.6e-19 Score=145.00 Aligned_cols=167 Identities=21% Similarity=0.333 Sum_probs=98.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
+.+|+++|.+|+|||||+++|++..... ....+.++ +... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~----- 46 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------VSDIAGTT----RDSI--------------DVPFE----- 46 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------ccCCCCCc----cCce--------------eeEEE-----
Confidence 4679999999999999999998864321 11111111 0000 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHH--HHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA--IITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~--~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+..+.+|||||+.+......... ...+.+ ....+|++++|+|+......... ..+.
T Consensus 47 --------------~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~ 107 (174)
T cd01895 47 --------------YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-----RIAG 107 (174)
T ss_pred --------------ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-----HHHH
Confidence 1245688999999865421111100 111111 11346999999999876554331 1123
Q ss_pred HHhhcCCCeEEEeeccccCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
.+...+.|+++|+||+|+.... ....+...+. +.+ ......+++++||++|.|+++
T Consensus 108 ~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 108 LILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIR---RKL-------------------PFLDYAPIVFISALTGQGVDK 165 (174)
T ss_pred HHHhcCCCEEEEEeccccCCccHHHHHHHHHHHH---hhc-------------------ccccCCceEEEeccCCCCHHH
Confidence 3444679999999999998652 2222222211 100 112357899999999999999
Q ss_pred HHHHHHHH
Q 020549 304 YFKAVEES 311 (324)
Q Consensus 304 l~~~i~~~ 311 (324)
+++.+.+.
T Consensus 166 ~~~~l~~~ 173 (174)
T cd01895 166 LFDAIDEV 173 (174)
T ss_pred HHHHHHHh
Confidence 99998764
No 92
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=4.6e-19 Score=148.49 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||++++.. .....++ .+|++++|+|+..+....... .+..+...++|+++|+||+|+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~------~~~~~~~--~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSY------EVSRSLA--ACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHH------HHHHHHH--hcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 56788999999987622 2222222 368999999998765433311 1122334679999999999986
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.... ....+.+. + .+ . .+..+++++||++|.|+++|++.|.+.++
T Consensus 133 ~~~~-~~~~~~~~---~--------------~~-----~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 133 SADP-ERVKQQIE---D--------------VL-----G-LDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred cCCH-HHHHHHHH---H--------------Hh-----C-CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 5321 11111111 1 00 0 11235899999999999999999987753
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=2.5e-19 Score=149.54 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=92.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+++|.+..+.. .. +++. +.... +.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-~~-------~t~g-------~~~~~------------------~~---- 54 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT-IS-------PTLG-------FQIKT------------------LE---- 54 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cC-------Cccc-------cceEE------------------EE----
Confidence 345789999999999999999998763321 00 0000 00000 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.+|||||+..+. . .....+ ..+|++++|+|+.... .....|.. ..+
T Consensus 55 ----------------~~~~~l~l~D~~G~~~~~--~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~--~~~ 108 (173)
T cd04154 55 ----------------YEGYKLNIWDVGGQKTLR--P----YWRNYF--ESTDALIWVVDSSDRLRLDDCKRELK--ELL 108 (173)
T ss_pred ----------------ECCEEEEEEECCCCHHHH--H----HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHH--HHH
Confidence 124578999999987641 1 111222 2468999999987642 11112211 111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......+.|+++|+||+|+.......+..+.+. +.. ......+++++||++|.|++++
T Consensus 109 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~---------------------~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 109 QEERLAGATLLILANKQDLPGALSEEEIREALE-LDK---------------------ISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred hChhhcCCCEEEEEECcccccCCCHHHHHHHhC-ccc---------------------cCCCceEEEeccCCCCcCHHHH
Confidence 112235799999999999975421111111110 000 0012468999999999999999
Q ss_pred HHHHHH
Q 020549 305 FKAVEE 310 (324)
Q Consensus 305 ~~~i~~ 310 (324)
|+.|..
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 998863
No 94
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=2.7e-19 Score=146.14 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+..+.||||||+.++.. .....+.+... ...+|++++|+|+.........+ ....+...+.|+++|+||+|
T Consensus 44 ~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 44 GREFILIDTGGIEPDDE--GISKEIREQAELAIEEADVILFVVDGREGLTPADEE-----IAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred CeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-----HHHHHHhcCCCEEEEEECcc
Confidence 46789999999877521 12222222111 13468999999998765544322 12334456799999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
+...... ..... . ....+++++||++|.|++++++.|.+.
T Consensus 117 ~~~~~~~---~~~~~-------------------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 117 NIKEEDE---AAEFY-------------------------S-LGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred cCChHHH---HHHHH-------------------------h-cCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 9875432 11110 1 122378999999999999999999875
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=4.5e-19 Score=169.17 Aligned_cols=172 Identities=19% Similarity=0.320 Sum_probs=107.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|++|+|||||+|+|++..... +...++++ ++.+ .....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~------------~~~~~gtt----~~~~---------------~~~~~-- 217 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVI------------VSDIAGTT----RDSI---------------DTPFE-- 217 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCce----EEEE---------------EEEEE--
Confidence 356899999999999999999999864321 22222222 1100 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHH-HHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGA-IITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~-~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.+...... ... ...+.+.. ..+|++++|+|+..+...++. ..
T Consensus 218 ----------------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-----~i 276 (435)
T PRK00093 218 ----------------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-----RI 276 (435)
T ss_pred ----------------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-----HH
Confidence 1255789999999865421111 110 11111211 347999999999988766552 22
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+..+...++|+|+|+||+|+.+.+...+..+.+.. .+ .+..+.+++++||++|.|+++
T Consensus 277 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~---~l-------------------~~~~~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 277 AGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRR---RL-------------------PFLDYAPIVFISALTGQGVDK 334 (435)
T ss_pred HHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHH---hc-------------------ccccCCCEEEEeCCCCCCHHH
Confidence 23445568999999999999865433322222221 10 223568999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 304 YFKAVEESAQE 314 (324)
Q Consensus 304 l~~~i~~~~~~ 314 (324)
+++.+.+....
T Consensus 335 l~~~i~~~~~~ 345 (435)
T PRK00093 335 LLEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHHH
Confidence 99999886653
No 96
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.81 E-value=1.4e-19 Score=152.30 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=95.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++|++..+...+.+++- . ++ +...+.+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g-----~-~~-~~~~i~~~---------------------------- 45 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG-----V-NF-MEKTISIR---------------------------- 45 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-----e-EE-EEEEEEEC----------------------------
Confidence 3799999999999999999998877643322210 0 00 00000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||+|+.++.. +... .-..+|++++|+|..+.. .....|... +...
T Consensus 46 -------------~~~~~l~iwDt~G~~~~~~-------~~~~-~~~~a~~iilv~D~t~~~s~~~i~~~~~~---~~~~ 101 (182)
T cd04128 46 -------------GTEITFSIWDLGGQREFIN-------MLPL-VCNDAVAILFMFDLTRKSTLNSIKEWYRQ---ARGF 101 (182)
T ss_pred -------------CEEEEEEEEeCCCchhHHH-------hhHH-HCcCCCEEEEEEECcCHHHHHHHHHHHHH---HHHh
Confidence 1245789999999877521 1111 113468999999976532 222234322 2222
Q ss_pred hhcCCCeEEEeeccccCChH---hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHE---FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.....| |+|+||+|+.... ......+....+. ... +.+++++||++|.|++++
T Consensus 102 ~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a----------------------~~~-~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 102 NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA----------------------KAM-KAPLIFCSTSHSINVQKI 157 (182)
T ss_pred CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH----------------------HHc-CCEEEEEeCCCCCCHHHH
Confidence 234466 7899999996321 1001111111111 111 368999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
|..|.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 97
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=1.7e-19 Score=156.22 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=97.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|.+|||||||+++++...+...+.+++ +....... + ...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~ti-----g~~~~~~~--~-----------------------~~~-- 58 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----GVEVHPLD--F-----------------------FTN-- 58 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcc-----ceeEEEEE--E-----------------------EEC--
Confidence 456899999999999999999998877654332221 00000000 0 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. ....++ ..++++|+|+|.... +.....|...+
T Consensus 59 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i--- 111 (219)
T PLN03071 59 ----------------CGKIRFYCWDTAGQEKFGG------LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDL--- 111 (219)
T ss_pred ----------------CeEEEEEEEECCCchhhhh------hhHHHc--ccccEEEEEEeCCCHHHHHHHHHHHHHH---
Confidence 1245788999999877621 111122 234677777776543 33333443333
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
... ..++|+++|+||+|+.......+. . .+. . ....+++++||++|.||+++
T Consensus 112 ~~~-~~~~piilvgNK~Dl~~~~v~~~~---~-~~~----------------------~-~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 112 CRV-CENIPIVLCGNKVDVKNRQVKAKQ---V-TFH----------------------R-KKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred HHh-CCCCcEEEEEEchhhhhccCCHHH---H-HHH----------------------H-hcCCEEEEcCCCCCCCHHHH
Confidence 222 357999999999998643211100 1 010 0 12467899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
|..|.+.+..
T Consensus 164 f~~l~~~~~~ 173 (219)
T PLN03071 164 FLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHc
Confidence 9999988754
No 98
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=3.5e-19 Score=146.57 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=95.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+......++. .........+ .
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~-----~~~~~~~~~~--~---------------------------- 45 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG-----VEFGSKIIRV--G---------------------------- 45 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----eeEEEEEEEE--C----------------------------
Confidence 3799999999999999999998876543221110 0000000000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..+|.+++|+|..+... ....| +..+..+
T Consensus 46 -------------~~~~~l~l~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~ 101 (161)
T cd04113 46 -------------GKRVKLQIWDTAGQERFRS------VTRSYY--RGAAGALLVYDITNRTSFEALPTW---LSDARAL 101 (161)
T ss_pred -------------CEEEEEEEEECcchHHHHH------hHHHHh--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence 1135788999999866521 111112 34689999999866332 22233 2222334
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+...... ..+....+.. . .+.+++++||++|.|++++|+.
T Consensus 102 ~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 102 ASPNIVVILVGNKSDLADQREV--TFLEASRFAQ---------------------E--NGLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred CCCCCeEEEEEEchhcchhccC--CHHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHHHHH
Confidence 4568999999999999753211 0011111111 1 2378999999999999999999
Q ss_pred HHHH
Q 020549 308 VEES 311 (324)
Q Consensus 308 i~~~ 311 (324)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd04113 157 CARS 160 (161)
T ss_pred HHHh
Confidence 9864
No 99
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=2.3e-19 Score=150.44 Aligned_cols=171 Identities=17% Similarity=0.206 Sum_probs=97.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|.+..+...+.+++. .+.......+.. .. ++....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~----~~--------------~~~~~~------ 58 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVG-IDFREKRVVYNS----SG--------------PGGTLG------ 58 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc-eEEEEEEEEEcC----cc--------------cccccc------
Confidence 47899999999999999999998877554322210 000000000000 00 000000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~ 226 (324)
......+.||||||+.++.. .....+ ..+|++++|+|..+. +.....|...+ ..
T Consensus 59 -------------~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i---~~ 114 (180)
T cd04127 59 -------------RGQRIHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQL---QT 114 (180)
T ss_pred -------------CCCEEEEEEEeCCChHHHHH------HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHH---HH
Confidence 01245788999999876521 111122 346888999987642 22222332222 11
Q ss_pred H-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 227 L-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
. ...+.|+++|+||+|+.+..... .+....+.+ . ...+++++||++|.|++++|
T Consensus 115 ~~~~~~~piiiv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 115 HAYCENPDIVLCGNKADLEDQRQVS--EEQAKALAD---------------------K--YGIPYFETSAATGTNVEKAV 169 (180)
T ss_pred hcCCCCCcEEEEEeCccchhcCccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHH
Confidence 1 12468999999999997542210 011111111 1 13689999999999999999
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
+.|.+.+.
T Consensus 170 ~~l~~~~~ 177 (180)
T cd04127 170 ERLLDLVM 177 (180)
T ss_pred HHHHHHHH
Confidence 99988664
No 100
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.4e-19 Score=138.55 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=112.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.-++|+++|..|+|||.|++++....|+.+...++ ++.-.-.+..
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgati-----gvdfmiktve------------------------------ 50 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI-----GVDFMIKTVE------------------------------ 50 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee-----eeeEEEEEEE------------------------------
Confidence 45789999999999999999999999998755444 2211111110
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..++++||||+||++|. .+...+.+++.+-+++|.|....++.-...|..++ ..+
T Consensus 51 -------------v~gekiklqiwdtagqerfr------sitqsyyrsahalilvydiscqpsfdclpewlrei---e~y 108 (213)
T KOG0095|consen 51 -------------VNGEKIKLQIWDTAGQERFR------SITQSYYRSAHALILVYDISCQPSFDCLPEWLREI---EQY 108 (213)
T ss_pred -------------ECCeEEEEEEeeccchHHHH------HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHH---HHH
Confidence 01446789999999999982 23344556666667778787777887776775544 445
Q ss_pred hhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
.....--|+|+||+|+.+..++ +..-+++. +. ..+-++++||+..+||+.||.
T Consensus 109 an~kvlkilvgnk~d~~drrevp~qigeefs-----------------~~---------qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 109 ANNKVLKILVGNKIDLADRREVPQQIGEEFS-----------------EA---------QDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred hhcceEEEeeccccchhhhhhhhHHHHHHHH-----------------Hh---------hhhhhhhhcccchhhHHHHHH
Confidence 5556667999999999876433 22222222 11 123467799999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 9876654
No 101
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=1.7e-19 Score=149.03 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=94.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+.....+++ +. .+.. . .+...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-----~~---~~~~----~------------------~~~~~----- 48 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI-----GV---EFAT----R------------------SIQID----- 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-----ce---EEEE----E------------------EEEEC-----
Confidence 689999999999999999999886653322111 00 0000 0 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.++.. .....+ ..++.+++|+|..+.. .....| +..+...
T Consensus 49 -------------~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~ 104 (165)
T cd01868 49 -------------GKTIKAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKKQTFENVERW---LKELRDH 104 (165)
T ss_pred -------------CEEEEEEEEeCCChHHHHH------HHHHHH--CCCCEEEEEEECcCHHHHHHHHHH---HHHHHHh
Confidence 1134688999999876411 111122 2357888999986422 112223 2222222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+...... ..+....+. . ....+++++||++|.|++++++.
T Consensus 105 ~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 105 ADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFA----------------------E-KNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred CCCCCeEEEEEECccccccccC--CHHHHHHHH----------------------H-HcCCEEEEEECCCCCCHHHHHHH
Confidence 3346899999999998754211 011111111 1 12468999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|...+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98764
No 102
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.80 E-value=1.2e-18 Score=146.38 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=94.8
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...+..+|+|+|++|+|||||+|+|++..+... +...+.++ .++. .
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~-----------~~~~~~~t-~~~~--------------------~-- 59 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLAR-----------TSKTPGRT-QLIN--------------------F-- 59 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc-----------ccCCCCcc-eEEE--------------------E--
Confidence 346778899999999999999999998743210 11111111 0000 0
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHh
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSN 219 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~ 219 (324)
+ ..+..+.||||||+..... +......+..+++. ..++.+++|+|+..++......
T Consensus 60 ---~--------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-- 120 (179)
T TIGR03598 60 ---F--------------EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-- 120 (179)
T ss_pred ---E--------------EeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--
Confidence 0 0023689999999754211 11111122233333 2358999999998766554421
Q ss_pred HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549 220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (324)
Q Consensus 220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~ 299 (324)
.+..+...++|+++|+||+|+..........+.++...+ ......+++++||++|+
T Consensus 121 ---~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~---------------------~~~~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 121 ---MLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALK---------------------KDADDPSVQLFSSLKKT 176 (179)
T ss_pred ---HHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHh---------------------hccCCCceEEEECCCCC
Confidence 123445568999999999999876543333333321111 11223589999999999
Q ss_pred ChH
Q 020549 300 GIE 302 (324)
Q Consensus 300 gv~ 302 (324)
|++
T Consensus 177 gi~ 179 (179)
T TIGR03598 177 GID 179 (179)
T ss_pred CCC
Confidence 984
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=5e-19 Score=145.76 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-HHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~~~~~~~p~ilv~NK~Dl 243 (324)
...+.||||||+.++.. ....++ ..+|+++||+|..+... ...+...+..+ ......+.|+++|+||+|+
T Consensus 43 ~~~~~l~D~~G~~~~~~------~~~~~~--~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 43 NISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRER-IGEAREELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred CEEEEEEECCCCHhHHH------HHHHHh--cCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 56789999999876521 111122 34689999999865321 11111111111 1111135899999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
.......+..+.+. + . .. .....++++||++|.||+++|+.|.+
T Consensus 114 ~~~~~~~~i~~~~~-~------------------~----~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 114 PNAMSAAEVTDKLG-L------------------H----SLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHhC-c------------------c----ccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 65321111111110 0 0 00 11245789999999999999998864
No 104
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=3.9e-19 Score=146.03 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH-HHHHHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
...+.||||||+.++. . .....+ ..+|++++|+|+........ ....+ ..+......+.|+++|+||+|+
T Consensus 42 ~~~~~i~Dt~G~~~~~--~----~~~~~~--~~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~Dl 112 (158)
T cd04151 42 NLKFQVWDLGGQTSIR--P----YWRCYY--SNTDAIIYVVDSTDRDRLGT-AKEELHAMLEEEELKGAVLLVFANKQDM 112 (158)
T ss_pred CEEEEEEECCCCHHHH--H----HHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence 5678999999987651 1 111112 34799999999875321111 11111 1111112247899999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
.......+....+. .. .+ ....+++++||++|.|++++|+.|++
T Consensus 113 ~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 113 PGALSEAEISEKLG---------------------LS--ELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCHHHHHHHhC---------------------cc--ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 75421111111110 00 00 11247999999999999999999875
No 105
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.80 E-value=2.3e-19 Score=148.99 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=93.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|.+|||||||+++|.+..+.....+++ .. .+... +...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~-------~~-~~~~~-----------------------~~~~----- 45 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI-------ED-SYRKQ-----------------------VEID----- 45 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc-------hh-eEEEE-----------------------EEEC-----
Confidence 479999999999999999999876643221111 00 00000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.++.. .....+. .++.+++|+|... .+.....|...+. ...
T Consensus 46 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~vlv~~~~~~~s~~~~~~~~~~i~--~~~ 102 (168)
T cd04177 46 -------------GRQCDLEILDTAGTEQFTA------MRELYIK--SGQGFLLVYSVTSEASLNELGELREQVL--RIK 102 (168)
T ss_pred -------------CEEEEEEEEeCCCcccchh------hhHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhh
Confidence 1235778999999887621 1111222 2466677776654 3333333332221 122
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. ..+...+++++||++|.|++++|..
T Consensus 103 ~~~~~piiiv~nK~D~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 103 DSDNVPMVLVGNKADLEDDRQVS--REDGVSLS----------------------QQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred CCCCCCEEEEEEChhccccCccC--HHHHHHHH----------------------HHcCCceEEEeeCCCCCCHHHHHHH
Confidence 34579999999999987543210 00111110 1123368999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|...+
T Consensus 159 i~~~~ 163 (168)
T cd04177 159 LVRQI 163 (168)
T ss_pred HHHHH
Confidence 98754
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.80 E-value=7.2e-19 Score=141.75 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred EEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh-HHHhHHHHHHHHhhcCCCeEEEeeccccCChH
Q 020549 169 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT-FMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 169 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 247 (324)
.+|||||+... .......+... -..+|++++|+|+.+...... .| . .. ...|+++|+||+|+.+..
T Consensus 38 ~~iDt~G~~~~--~~~~~~~~~~~--~~~ad~vilv~d~~~~~s~~~~~~---~---~~---~~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 38 GAIDTPGEYVE--NRRLYSALIVT--AADADVIALVQSATDPESRFPPGF---A---SI---FVKPVIGLVTKIDLAEAD 104 (142)
T ss_pred eeecCchhhhh--hHHHHHHHHHH--hhcCCEEEEEecCCCCCcCCChhH---H---Hh---ccCCeEEEEEeeccCCcc
Confidence 58999997311 11111112121 235799999999876654322 22 1 11 235999999999997532
Q ss_pred hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 248 FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
...+ ....+. +.....+++++||++|.|++++|+.|.
T Consensus 105 ~~~~---~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 105 VDIE---RAKELL----------------------ETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred cCHH---HHHHHH----------------------HHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 1111 111111 111234799999999999999998874
No 107
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=2.3e-19 Score=147.62 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc--hhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--MTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
...+.+|||||+.++.. .....+ ..+|+++||+|++..... ...|...+.....+...++|+++|+||+|
T Consensus 44 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 115 (162)
T cd04157 44 NLSFTAFDMSGQGKYRG------LWEHYY--KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD 115 (162)
T ss_pred CEEEEEEECCCCHhhHH------HHHHHH--ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence 56789999999876521 111122 346999999998764321 11121111000011234799999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
+.......+....+. +. . .....+++++||++|.|++++|+.|.+
T Consensus 116 l~~~~~~~~~~~~l~-~~----------------------~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 116 LPDALTAVKITQLLG-LE----------------------NIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred ccCCCCHHHHHHHhC-Cc----------------------cccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 975422111111100 00 0 011246899999999999999999864
No 108
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.80 E-value=4.5e-19 Score=153.21 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=97.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++|++..+.. ..+++ . +....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Ti-------g-----------------------------~~~~~----- 38 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTV-------G-----------------------------GAFYL----- 38 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCcc-------c-----------------------------eEEEE-----
Confidence 379999999999999999999887642 11110 0 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.. .....+.||||||++++.. .. ..++ ..+|++|+|+|..+. +.....|.. .+...
T Consensus 39 ~~-----------~~~~~l~iwDt~G~e~~~~---l~---~~~~--~~ad~~IlV~Dvt~~~Sf~~l~~~~~---~l~~~ 96 (220)
T cd04126 39 KQ-----------WGPYNISIWDTAGREQFHG---LG---SMYC--RGAAAVILTYDVSNVQSLEELEDRFL---GLTDT 96 (220)
T ss_pred EE-----------eeEEEEEEEeCCCcccchh---hH---HHHh--ccCCEEEEEEECCCHHHHHHHHHHHH---HHHHh
Confidence 00 1245788999999877521 11 1112 346888999887653 333322211 11122
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHH-HHHH--hcCccchhhHHHHHHH---hHHHH--hccCceeeeccccCC
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVF-QAAI--SSDHSYTSTLTNSLSL---ALDEF--YKNLKSVGVSSVSGA 299 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l-~~~~--~~~~~~~~~l~~~~~~---~~~~~--~~~~~iv~vSA~~g~ 299 (324)
...++|+|+|+||+|+................ .... .-..+.+..++++.+. +.+.. ....++++|||++|.
T Consensus 97 ~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~ 176 (220)
T cd04126 97 ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176 (220)
T ss_pred cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCC
Confidence 23568999999999997521000000000000 0000 0000001122222110 00000 112679999999999
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQEFME 317 (324)
Q Consensus 300 gv~~l~~~i~~~~~~~~~ 317 (324)
||+++|..+++.+.....
T Consensus 177 ~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 177 NVDELFEYLFNLVLPLIL 194 (220)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999988765443
No 109
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.80 E-value=5.2e-19 Score=146.94 Aligned_cols=164 Identities=16% Similarity=0.212 Sum_probs=95.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+......++. .. + ....+ ...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~-----~~-~-~~~~~-----------------------~~~----- 45 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG-----AD-F-LTKEV-----------------------TVD----- 45 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc-----eE-E-EEEEE-----------------------EEC-----
Confidence 3799999999999999999998865433221110 00 0 00000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+..+.. .....+ ..+|++++++|...... ....|...+ ...+
T Consensus 46 -------------~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~ 102 (172)
T cd01862 46 -------------DKLVTLQIWDTAGQERFQS------LGVAFY--RGADCCVLVYDVTNPKSFESLDSWRDEF--LIQA 102 (172)
T ss_pred -------------CEEEEEEEEeCCChHHHHh------HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHH--HHhc
Confidence 1234678999999765421 111122 33689999998865431 112232211 1111
Q ss_pred h---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 228 ~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
. ..++|+++|+||+|+..+... ..+....+. ......+++++||++|.|++++
T Consensus 103 ~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 103 SPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWC----------------------QSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred CccCCCCceEEEEEECccccccccc--CHHHHHHHH----------------------HHcCCceEEEEECCCCCCHHHH
Confidence 1 237899999999999842211 001111111 1122468999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
++.|.+.+.+.
T Consensus 159 ~~~i~~~~~~~ 169 (172)
T cd01862 159 FETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999877654
No 110
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.1e-19 Score=165.60 Aligned_cols=176 Identities=22% Similarity=0.297 Sum_probs=120.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+++.|+++|+...|||||+..+.+.....+....+.++ + |.+....
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQh------------I--------------------GA~~v~~- 49 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQH------------I--------------------GAYQVPL- 49 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeE------------e--------------------eeEEEEe-
Confidence 367889999999999999999998876554322222111 0 0011110
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
+. .....+.|+||||++-|..-++.+. ..+|++++|||+.+++.+++ .+.++.
T Consensus 50 --~~------------~~~~~itFiDTPGHeAFt~mRaRGa--------~vtDIaILVVa~dDGv~pQT-----iEAI~h 102 (509)
T COG0532 50 --DV------------IKIPGITFIDTPGHEAFTAMRARGA--------SVTDIAILVVAADDGVMPQT-----IEAINH 102 (509)
T ss_pred --cc------------CCCceEEEEcCCcHHHHHHHHhcCC--------ccccEEEEEEEccCCcchhH-----HHHHHH
Confidence 00 0246899999999766522111111 45799999999999999988 555677
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
++..+.|+|+++||+|+.+..-.. ...++ .+.+...+.|.....++|+||++|+|+++|+.
T Consensus 103 ak~a~vP~iVAiNKiDk~~~np~~-v~~el------------------~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~ 163 (509)
T COG0532 103 AKAAGVPIVVAINKIDKPEANPDK-VKQEL------------------QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLE 163 (509)
T ss_pred HHHCCCCEEEEEecccCCCCCHHH-HHHHH------------------HHcCCCHhhcCCceEEEEeeccCCCCHHHHHH
Confidence 888999999999999998643111 11111 12244455777788999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 020549 307 AVEESAQEFMETYKY 321 (324)
Q Consensus 307 ~i~~~~~~~~~~~~~ 321 (324)
.|.-...-...++.+
T Consensus 164 ~ill~aev~elka~~ 178 (509)
T COG0532 164 LILLLAEVLELKANP 178 (509)
T ss_pred HHHHHHHHHhhhcCC
Confidence 998877666555443
No 111
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=3.5e-19 Score=169.46 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=100.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
+.+++|+++|++|||||||+|+|++..... +...++++ ++... ..+.
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~--------------~~i~--- 259 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAI------------VTDIAGTT----RDVIE--------------EHIN--- 259 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcc----cccEE--------------EEEE---
Confidence 456889999999999999999999865421 33334333 11100 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHH-HHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA-IITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~-~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+..+.||||||+.++ ...... .+.+.+. ...+|++++|+|++....... ...+
T Consensus 260 ----------------~~g~~i~l~DT~G~~~~--~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-----~~~l 316 (449)
T PRK05291 260 ----------------LDGIPLRLIDTAGIRET--DDEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-----DEIL 316 (449)
T ss_pred ----------------ECCeEEEEEeCCCCCCC--ccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-----HHHH
Confidence 12567899999998764 211111 1112221 144799999999977653322 1111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.. ..++|+++|+||+|+.+..... . ....+++++||++|.|+++|
T Consensus 317 ~~--~~~~piiiV~NK~DL~~~~~~~------~---------------------------~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 317 EE--LKDKPVIVVLNKADLTGEIDLE------E---------------------------ENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred Hh--cCCCCcEEEEEhhhccccchhh------h---------------------------ccCCceEEEEeeCCCCHHHH
Confidence 11 4578999999999997643211 0 12467899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
++.|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 112
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=5.7e-19 Score=145.46 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=95.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+......++ ... .....+ ...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~-----~~~--~~~~~~-----------------------~~~----- 45 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTI-----GVD--FKTKTI-----------------------EVD----- 45 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----eeE--EEEEEE-----------------------EEC-----
Confidence 479999999999999999999876643221111 000 000000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
.....+.+|||||+.++. ......+ ..+|++++|+|..+...... ...++..+.....
T Consensus 46 -------------~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~d~~ilv~d~~~~~s~~~-~~~~l~~~~~~~~ 103 (164)
T smart00175 46 -------------GKRVKLQIWDTAGQERFR------SITSSYY--RGAVGALLVYDITNRESFEN-LKNWLKELREYAD 103 (164)
T ss_pred -------------CEEEEEEEEECCChHHHH------HHHHHHh--CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC
Confidence 113478899999976641 1111112 34699999999876332211 1111221122222
Q ss_pred cCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
.++|+++|+||+|+...... .+....+. . ..+.+++++||++|.|++++++.|
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~-------------------------~-~~~~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFA-------------------------E-EHGLPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHH-------------------------H-HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 57999999999998753211 11111111 1 124679999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
.+.+.+
T Consensus 158 ~~~~~~ 163 (164)
T smart00175 158 AREILK 163 (164)
T ss_pred HHHHhh
Confidence 987753
No 113
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=3.5e-19 Score=152.05 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=94.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|++|||||||+++|++..+...+..++. ... .. .+...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-------~~~-~~-----------------------~~~~~------ 43 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-------EMH-RK-----------------------EYEVG------ 43 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-------hhe-eE-----------------------EEEEC------
Confidence 589999999999999999998765432211110 000 00 00000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~ 228 (324)
.....+.||||||+.++.. +.. .....+|++++|+|..+.. .....|...+ .....
T Consensus 44 ------------~~~~~l~i~D~~G~~~~~~-------~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i--~~~~~ 101 (198)
T cd04147 44 ------------GVSLTLDILDTSGSYSFPA-------MRK-LSIQNSDAFALVYAVDDPESFEEVERLREEI--LEVKE 101 (198)
T ss_pred ------------CEEEEEEEEECCCchhhhH-------HHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHH--HHhcC
Confidence 1135788999999876511 111 1123468999999986532 1112222111 12222
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+......... ....... ......+++++||++|.|++++|+.|
T Consensus 102 ~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~----------------------~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 102 DKFVPIVVVGNKADSLEEERQVPA-KDALSTV----------------------ELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred CCCCcEEEEEEccccccccccccH-HHHHHHH----------------------HhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 357999999999999763211000 0000000 00113678999999999999999999
Q ss_pred HHHHHHH
Q 020549 309 EESAQEF 315 (324)
Q Consensus 309 ~~~~~~~ 315 (324)
.+.+...
T Consensus 159 ~~~~~~~ 165 (198)
T cd04147 159 LRQANLP 165 (198)
T ss_pred HHHhhcc
Confidence 9987643
No 114
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.80 E-value=4.1e-19 Score=148.21 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=93.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+...+.+++... + ... +...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~------~--~~~-----------------------~~~~----- 45 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN------Y--VAD-----------------------IEVD----- 45 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccc------e--EEE-----------------------EEEC-----
Confidence 479999999999999999999987654332211000 0 000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~-~~~~~~~~~~~~ 226 (324)
.....+.||||||++++..... .. -..+|+++++.|... ++... ..|...+ ..
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~~~~------~~--~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~---~~ 101 (175)
T cd01870 46 -------------GKQVELALWDTAGQEDYDRLRP------LS--YPDTDVILMCFSIDSPDSLENIPEKWTPEV---KH 101 (175)
T ss_pred -------------CEEEEEEEEeCCCchhhhhccc------cc--cCCCCEEEEEEECCCHHHHHHHHHHHHHHH---Hh
Confidence 1245788999999876521000 01 133577776666543 33222 1232222 11
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
...++|+++|+||+|+.............. .. ......+..+.......++++|||++|.|++++|.
T Consensus 102 -~~~~~piilv~nK~Dl~~~~~~~~~i~~~~----------~~--~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 102 -FCPNVPIILVGNKKDLRNDEHTRRELAKMK----------QE--PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred -hCCCCCEEEEeeChhcccChhhhhhhhhcc----------CC--CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHH
Confidence 124789999999999875432211110000 00 00001111111222345799999999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.|.+.+
T Consensus 169 ~l~~~~ 174 (175)
T cd01870 169 MATRAA 174 (175)
T ss_pred HHHHHh
Confidence 998654
No 115
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.80 E-value=2e-19 Score=147.94 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=92.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|++|||||||+++|.+..+.....++. ....+... +...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~-----------------------~~~~------ 45 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATI-------GIDFLSKT-----------------------MYLE------ 45 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCce-------eeeEEEEE-----------------------EEEC------
Confidence 79999999999999999999886654221111 00000000 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.+|||||+.++.. .....+ ..+|++++|+|.... +.....|... +....
T Consensus 46 ------------~~~~~l~~~D~~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~---~~~~~ 102 (161)
T cd01861 46 ------------DKTVRLQLWDTAGQERFRS------LIPSYI--RDSSVAVVVYDITNRQSFDNTDKWIDD---VRDER 102 (161)
T ss_pred ------------CEEEEEEEEECCCcHHHHH------HHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHH---HHHhC
Confidence 1134688999999866521 111222 345888899888653 2222233221 11122
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+.|+++|+||+|+...... ..+....+. . ..+.+++++||++|.|+++++..|
T Consensus 103 ~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 103 GNDVIIVLVGNKTDLSDKRQV--STEEGEKKA----------------------K-ELNAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred CCCCEEEEEEEChhccccCcc--CHHHHHHHH----------------------H-HhCCEEEEEeCCCCCCHHHHHHHH
Confidence 235999999999999643211 011111110 1 124789999999999999999999
Q ss_pred HHH
Q 020549 309 EES 311 (324)
Q Consensus 309 ~~~ 311 (324)
.+.
T Consensus 158 ~~~ 160 (161)
T cd01861 158 ASA 160 (161)
T ss_pred HHh
Confidence 875
No 116
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.80 E-value=2.5e-19 Score=147.80 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=93.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|+|||||++++++..+...+.+++. .. + ....+ ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~-----~~-~-~~~~~-----------------------~~~----- 45 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG-----VD-F-KMKTI-----------------------EVD----- 45 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee-----eE-E-EEEEE-----------------------EEC-----
Confidence 3699999999999999999998776543222110 00 0 00000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..+|++++++|... ++.....|.. .+...
T Consensus 46 -------------~~~~~l~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~sf~~~~~~~~---~~~~~ 101 (161)
T cd04117 46 -------------GIKVRIQIWDTAGQERYQT------ITKQYY--RRAQGIFLVYDISSERSYQHIMKWVS---DVDEY 101 (161)
T ss_pred -------------CEEEEEEEEeCCCcHhHHh------hHHHHh--cCCcEEEEEEECCCHHHHHHHHHHHH---HHHHh
Confidence 1135688999999877521 111122 23577777777654 3333333432 22233
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+........ +....+. +. ...+++++||++|.||+++|..
T Consensus 102 ~~~~~~iilvgnK~Dl~~~~~v~~--~~~~~~~----------------------~~-~~~~~~e~Sa~~~~~v~~~f~~ 156 (161)
T cd04117 102 APEGVQKILIGNKADEEQKRQVGD--EQGNKLA----------------------KE-YGMDFFETSACTNSNIKESFTR 156 (161)
T ss_pred CCCCCeEEEEEECcccccccCCCH--HHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHH
Confidence 334689999999999875432110 1111111 11 1367899999999999999999
Q ss_pred HHHH
Q 020549 308 VEES 311 (324)
Q Consensus 308 i~~~ 311 (324)
|.+.
T Consensus 157 l~~~ 160 (161)
T cd04117 157 LTEL 160 (161)
T ss_pred HHhh
Confidence 9864
No 117
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=1.2e-18 Score=150.29 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=99.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+|+|++|||||||+++|++..+... . +... ..+. +.. +...
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~-------~t~~-~~~~----~~~------------------~~~~- 58 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-A-------PTIG-VDFK----IKQ------------------LTVG- 58 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCc-C-------CCce-eEEE----EEE------------------EEEC-
Confidence 34568999999999999999999998754321 0 0000 0000 000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~ 222 (324)
.....+.||||||++++.. .....+ ..+|++|+|+|...... .. ..|...+
T Consensus 59 -----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~vlv~D~~~~~sf~~~~~~~~~~~- 112 (211)
T PLN03118 59 -----------------GKRLKLTIWDTAGQERFRT------LTSSYY--RNAQGIILVYDVTRRETFTNLSDVWGKEV- 112 (211)
T ss_pred -----------------CEEEEEEEEECCCchhhHH------HHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHH-
Confidence 1235788999999887621 111122 23589999999865321 11 1232222
Q ss_pred HHHHH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 223 ACSIL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 223 ~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
... ...+.|+++|+||+|+....... .+....+. . ....+++++||++|.|+
T Consensus 113 --~~~~~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~----------------------~-~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 113 --ELYSTNQDCVKMLVGNKVDRESERDVS--REEGMALA----------------------K-EHGCLFLECSAKTRENV 165 (211)
T ss_pred --HHhcCCCCCCEEEEEECccccccCccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCH
Confidence 111 13467999999999997543210 00111110 0 12367899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020549 302 EAYFKAVEESAQEFMET 318 (324)
Q Consensus 302 ~~l~~~i~~~~~~~~~~ 318 (324)
+++|+.|.+.+...+..
T Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 166 EQCFEELALKIMEVPSL 182 (211)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999988765543
No 118
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.80 E-value=2.3e-19 Score=157.95 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=94.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++|++..+...+.+++ ... +...+. .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-------~d~-~~k~~~-----------------------i------ 43 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-------EDF-HRKLYS-----------------------I------ 43 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-------hHh-EEEEEE-----------------------E------
Confidence 369999999999999999999877754332211 000 000000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~ 227 (324)
....+.+.||||+|++++.. +... .-..+|++++|+|..+ ++.....|...+......
T Consensus 44 ------------~~~~~~l~I~Dt~G~~~~~~-------~~~~-~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~ 103 (247)
T cd04143 44 ------------RGEVYQLDILDTSGNHPFPA-------MRRL-SILTGDVFILVFSLDNRESFEEVCRLREQILETKSC 103 (247)
T ss_pred ------------CCEEEEEEEEECCCChhhhH-------HHHH-HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcc
Confidence 01235778999999876521 1111 1123577777776654 333333443333211110
Q ss_pred ------hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 228 ------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 228 ------~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
...++|+|+|+||+|+...... ..+++..+. ......+++++||++|.|+
T Consensus 104 ~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~----------------------~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 104 LKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLV----------------------GGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred cccccccCCCCcEEEEEECccchhcccc--CHHHHHHHH----------------------HhcCCCEEEEEeCCCCCCH
Confidence 2247899999999999753211 111111110 0012467999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 302 EAYFKAVEESA 312 (324)
Q Consensus 302 ~~l~~~i~~~~ 312 (324)
+++|..|....
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 119
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.80 E-value=7.9e-19 Score=144.62 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=94.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+......+. +......+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~~~~~~v~~~------------------------------ 46 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTI-----GAAFLTQTVNLD------------------------------ 46 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-----ceeEEEEEEEEC------------------------------
Confidence 579999999999999999999987654221111 000000000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.++.. +.... -..+|++++++|+.... .....| +..+...
T Consensus 47 -------------~~~~~~~i~D~~G~~~~~~-------~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~ 102 (163)
T cd01860 47 -------------DTTVKFEIWDTAGQERYRS-------LAPMY-YRGAAAAIVVYDITSEESFEKAKSW---VKELQRN 102 (163)
T ss_pred -------------CEEEEEEEEeCCchHHHHH-------HHHHH-hccCCEEEEEEECcCHHHHHHHHHH---HHHHHHh
Confidence 1245788999999766421 11111 13468999999986432 222222 2222222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+...... ..+....+.. . ...+++++||++|.|++++++.
T Consensus 103 ~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd01860 103 ASPNIIIALVGNKADLESKRQV--STEEAQEYAD---------------------E--NGLLFFETSAKTGENVNELFTE 157 (163)
T ss_pred CCCCCeEEEEEECccccccCcC--CHHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHHHHH
Confidence 2356899999999998743211 0011111110 1 1367999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 158 l~~~l 162 (163)
T cd01860 158 IAKKL 162 (163)
T ss_pred HHHHh
Confidence 98876
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=9.9e-19 Score=175.46 Aligned_cols=171 Identities=19% Similarity=0.236 Sum_probs=107.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|++|||||||+|+|++..+.. +..+++++ ++.+. ..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------v~~~~gtT----~d~~~--------------~~~~---- 494 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------VNDLAGTT----RDPVD--------------EIVE---- 494 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------cCCCCCCC----cCcce--------------eEEE----
Confidence 34789999999999999999999875431 33344443 11110 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHH---Hh-ccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA---FA-STFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~---~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.+... ...+...... .. -..+|++++|+|+..+...++. ..
T Consensus 495 ---------------~~~~~~~liDTaG~~~~~~-~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~-----~i 553 (712)
T PRK09518 495 ---------------IDGEDWLFIDTAGIKRRQH-KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL-----KV 553 (712)
T ss_pred ---------------ECCCEEEEEECCCcccCcc-cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH-----HH
Confidence 1255788999999865311 1111111111 11 1347999999999988765542 12
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+..+...++|+|+|+||+|+.+......+...+.. .+ ....+.+++++||++|.|+++
T Consensus 554 ~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~---~l-------------------~~~~~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 554 MSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT---EF-------------------DRVTWARRVNLSAKTGWHTNR 611 (712)
T ss_pred HHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH---hc-------------------cCCCCCCEEEEECCCCCCHHH
Confidence 23444568999999999999875432211111110 00 123457899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEF 315 (324)
Q Consensus 304 l~~~i~~~~~~~ 315 (324)
|++.+.+..+..
T Consensus 612 L~~~i~~~~~~~ 623 (712)
T PRK09518 612 LAPAMQEALESW 623 (712)
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.80 E-value=6e-19 Score=144.97 Aligned_cols=114 Identities=23% Similarity=0.268 Sum_probs=66.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HHHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~~~~~~~~p~ilv~NK~Dl 243 (324)
...+.||||||+.++.. .....+ ..+|+++||+|+++...- ..+...+.. +......+.|+++|+||+|+
T Consensus 43 ~~~l~i~D~~G~~~~~~------~~~~~~--~~~~~iv~v~D~~~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDVGGQEKMRT------VWKCYL--ENTDGLVYVVDSSDEARL-DESQKELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred ceEEEEEECCCCHhHHH------HHHHHh--ccCCEEEEEEECCcHHHH-HHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence 45789999999866411 111112 346899999998765311 111111111 11112257999999999998
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
.......+....+. + . .+. ...+++++||++|+|++++|+.|.+
T Consensus 114 ~~~~~~~~i~~~~~-~-~---------------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 114 PGALTAEEITRRFK-L-K---------------------KYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCcCHHHHHHHcC-C-c---------------------ccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 64321111111110 0 0 111 2346899999999999999998864
No 122
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=8.8e-19 Score=147.39 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=93.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|.+|||||||+++|....+.. .. |++. ..... ++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~-------pt~g-~~~~~-~~---------------------------- 57 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TI-------PTIG-FNVET-VE---------------------------- 57 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-cc-------CCcc-eeEEE-EE----------------------------
Confidence 45789999999999999999998654431 11 1110 00000 00
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. ....++ ..+|++|||+|+++...- ..+...+. ..+
T Consensus 58 ---------------~~~~~~~i~D~~Gq~~~~~------~~~~~~--~~a~~iI~V~D~s~~~s~-~~~~~~l~--~~l 111 (181)
T PLN00223 58 ---------------YKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRDRV-VEARDELH--RML 111 (181)
T ss_pred ---------------ECCEEEEEEECCCCHHHHH------HHHHHh--ccCCEEEEEEeCCcHHHH-HHHHHHHH--HHh
Confidence 2256789999999866511 111122 336899999998753211 11211121 111
Q ss_pred h---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 228 ~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~ 303 (324)
. ..+.|+++|+||+|+.......+..+.+ +. ... .....++++||++|+||++
T Consensus 112 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---------------------~l--~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL---------------------GL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred cCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---------------------Cc--cccCCCceEEEeccCCCCCCHHH
Confidence 1 1468999999999987543221111111 00 000 0112466899999999999
Q ss_pred HHHHHHHHHHH
Q 020549 304 YFKAVEESAQE 314 (324)
Q Consensus 304 l~~~i~~~~~~ 314 (324)
+|+.|.+.+..
T Consensus 169 ~~~~l~~~~~~ 179 (181)
T PLN00223 169 GLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 123
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=1.3e-18 Score=147.19 Aligned_cols=162 Identities=14% Similarity=0.209 Sum_probs=96.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+...+..++ +....... +...
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~------------~~~~~~~~------------------~~~~----- 45 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI------------GVDFKIKT------------------VYIE----- 45 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce------------eeEEEEEE------------------EEEC-----
Confidence 479999999999999999999887654222111 00000000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
.....+.||||||+.++.. +...+ -..+|++++|+|...... ......++..+.....
T Consensus 46 -------------~~~~~~~i~Dt~g~~~~~~-------~~~~~-~~~~d~iilv~d~~~~~s-~~~i~~~~~~i~~~~~ 103 (188)
T cd04125 46 -------------NKIIKLQIWDTNGQERFRS-------LNNSY-YRGAHGYLLVYDVTDQES-FENLKFWINEINRYAR 103 (188)
T ss_pred -------------CEEEEEEEEECCCcHHHHh-------hHHHH-ccCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCC
Confidence 1235678999999766421 11111 134689999999765321 1111112222233333
Q ss_pred cCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
...|+++|+||+|+.+..... .....+ . .. .+.+++++||++|.|++++|..|
T Consensus 104 ~~~~~ivv~nK~Dl~~~~~v~~~~~~~~---~----------------------~~-~~~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 104 ENVIKVIVANKSDLVNNKVVDSNIAKSF---C----------------------DS-LNIPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred CCCeEEEEEECCCCcccccCCHHHHHHH---H----------------------HH-cCCeEEEEeCCCCCCHHHHHHHH
Confidence 468999999999987543110 011111 0 11 24589999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
.+.+..
T Consensus 158 ~~~~~~ 163 (188)
T cd04125 158 VKLIIK 163 (188)
T ss_pred HHHHHH
Confidence 998764
No 124
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=2.9e-18 Score=166.86 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+.||||||++.|.. ..... ...+|++++|+|+.++..++++. .+..+...++|+++|+||+|+..
T Consensus 69 ~~l~~iDTpG~e~f~~------l~~~~--~~~aD~~IlVvD~~~g~~~qt~e-----~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTN------LRKRG--GALADLAILIVDINEGFKPQTQE-----ALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CcEEEEECCCcHhHHH------HHHHH--HhhCCEEEEEEECCcCCCHhHHH-----HHHHHHHcCCCEEEEEECCCccc
Confidence 3589999999877621 11111 13579999999999887766532 22344556899999999999975
Q ss_pred hHhH---HHHHHhHHHHHHHHhcC-ccchhhHHH---HHHHh------HHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549 246 HEFA---LEWMQDFEVFQAAISSD-HSYTSTLTN---SLSLA------LDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 246 ~~~~---~~~~~~~~~l~~~~~~~-~~~~~~l~~---~~~~~------~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
.... ..+.+............ ......+.. +++.. ++++....+++|+||++|+|+++|+..|....
T Consensus 136 ~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 136 GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 3110 00111000000000000 000011111 11111 12455668999999999999999999887655
Q ss_pred HH
Q 020549 313 QE 314 (324)
Q Consensus 313 ~~ 314 (324)
..
T Consensus 216 ~~ 217 (590)
T TIGR00491 216 QQ 217 (590)
T ss_pred HH
Confidence 43
No 125
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.79 E-value=1.6e-18 Score=142.61 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=66.8
Q ss_pred EEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhH
Q 020549 170 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFA 249 (324)
Q Consensus 170 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~ 249 (324)
+|||||+... +......+...+ ..+|++++|+|+.........|. . . + ..++|+++|+||+|+.+.+ .
T Consensus 41 ~iDtpG~~~~--~~~~~~~~~~~~--~~ad~il~v~d~~~~~s~~~~~~--~---~-~-~~~~~ii~v~nK~Dl~~~~-~ 108 (158)
T PRK15467 41 DIDTPGEYFS--HPRWYHALITTL--QDVDMLIYVHGANDPESRLPAGL--L---D-I-GVSKRQIAVISKTDMPDAD-V 108 (158)
T ss_pred cccCCccccC--CHHHHHHHHHHH--hcCCEEEEEEeCCCcccccCHHH--H---h-c-cCCCCeEEEEEccccCccc-H
Confidence 6999997432 111122222222 34699999999987654333221 1 1 1 2468999999999986532 1
Q ss_pred HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 250 LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
..+..+.. ......|++++||++|+|+++||+.|.+.+.+
T Consensus 109 ----~~~~~~~~---------------------~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 ----AATRKLLL---------------------ETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred ----HHHHHHHH---------------------HcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 11111111 11112589999999999999999999988754
No 126
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.2e-18 Score=164.03 Aligned_cols=162 Identities=23% Similarity=0.260 Sum_probs=96.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+|+|++|||||||+|+|++..+. +.+.+++| .|... ..+..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------v~~~~~tT-ld~~~----------------~~i~l----- 241 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------AADQLFAT-LDPTL----------------RRIDV----- 241 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCCCC-cCCce----------------EEEEe-----
Confidence 367999999999999999999886432 22222222 11000 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchh--HHHhHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMT--FMSNMLYACS 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~ 225 (324)
.....+.||||||+.+........ .+...+.. ..+|++++|+|+++...... .|...+ .
T Consensus 242 --------------~~~~~~~l~DTaG~~r~lp~~lve-~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL---~ 303 (426)
T PRK11058 242 --------------ADVGETVLADTVGFIRHLPHDLVA-AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVL---E 303 (426)
T ss_pred --------------CCCCeEEEEecCcccccCCHHHHH-HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHH---H
Confidence 112377899999985421111111 12222222 45799999999977532221 222222 3
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc-eeeeccccCCChHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-iv~vSA~~g~gv~~l 304 (324)
.+...++|+++|+||+|+...... ... ......+ ++++||++|.|+++|
T Consensus 304 el~~~~~pvIiV~NKiDL~~~~~~-----~~~-------------------------~~~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 304 EIDAHEIPTLLVMNKIDMLDDFEP-----RID-------------------------RDEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred HhccCCCCEEEEEEcccCCCchhH-----HHH-------------------------HHhcCCCceEEEeCCCCCCHHHH
Confidence 333457999999999999753210 010 0001223 588999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
++.|.+.+.
T Consensus 354 ~e~I~~~l~ 362 (426)
T PRK11058 354 FQALTERLS 362 (426)
T ss_pred HHHHHHHhh
Confidence 999998875
No 127
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=1.4e-18 Score=145.46 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=92.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|.+|||||||+++|....+.. .. |+. .+++.. + .
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~-------~t~-------~~~~~~------------------~-~---- 53 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT-TI-------PTI-------GFNVET------------------V-T---- 53 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-cC-------Ccc-------ccceEE------------------E-E----
Confidence 45889999999999999999997554321 10 110 000000 0 0
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-HH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~ 226 (324)
.....+.||||||+.++.. ....++ ..+|++|||+|.+.... .......+..+ ..
T Consensus 54 ---------------~~~~~l~l~D~~G~~~~~~------~~~~~~--~~ad~ii~v~D~t~~~s-~~~~~~~l~~~~~~ 109 (175)
T smart00177 54 ---------------YKNISFTVWDVGGQDKIRP------LWRHYY--TNTQGLIFVVDSNDRDR-IDEAREELHRMLNE 109 (175)
T ss_pred ---------------ECCEEEEEEECCCChhhHH------HHHHHh--CCCCEEEEEEECCCHHH-HHHHHHHHHHHhhC
Confidence 1256789999999876511 111122 34689999999865321 11111112111 11
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+.......++.+.+. ... .......++++||++|.||+++|+
T Consensus 110 ~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 110 DELRDAVILVFANKQDLPDAMKAAEITEKLG---------------------LHS-IRDRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred HhhcCCcEEEEEeCcCcccCCCHHHHHHHhC---------------------ccc-cCCCcEEEEEeeCCCCCCHHHHHH
Confidence 1124689999999999865321111111110 000 001124577899999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.|.+.+
T Consensus 168 ~l~~~~ 173 (175)
T smart00177 168 WLSNNL 173 (175)
T ss_pred HHHHHh
Confidence 998764
No 128
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.79 E-value=3e-19 Score=138.66 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=113.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++.+|+|.+|+|||+|+.++....|...+..++ +.|.. +|..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTi-GvDfk-----------irTv-------------------------- 50 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI-GVDFK-----------IRTV-------------------------- 50 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEe-eeeEE-----------EEEe--------------------------
Confidence 557899999999999999999998876655443 11111 1110
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
...+..++++||||+|+++|.. +...+++.+..-++||.|.+.+++.....|.+.+. . ..
T Consensus 51 ----------~i~G~~VkLqIwDtAGqErFrt------itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~---~-nc 110 (198)
T KOG0079|consen 51 ----------DINGDRVKLQIWDTAGQERFRT------ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIR---N-NC 110 (198)
T ss_pred ----------ecCCcEEEEEEeecccHHHHHH------HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHH---h-cC
Confidence 0013467899999999998832 55556666767788899999999998888865542 2 22
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
...|-|+|+||+|......+.. ++-+.+ +. ..++.++++|||...|++..|..|.
T Consensus 111 dsv~~vLVGNK~d~~~RrvV~t--~dAr~~--------------A~---------~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 111 DSVPKVLVGNKNDDPERRVVDT--EDARAF--------------AL---------QMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred ccccceecccCCCCccceeeeh--HHHHHH--------------HH---------hcCchheehhhhhcccchHHHHHHH
Confidence 3688899999999987643211 111111 11 1357899999999999999999998
Q ss_pred HHHHHH
Q 020549 310 ESAQEF 315 (324)
Q Consensus 310 ~~~~~~ 315 (324)
+.....
T Consensus 166 ~qvl~~ 171 (198)
T KOG0079|consen 166 KQVLQA 171 (198)
T ss_pred HHHHHH
Confidence 876543
No 129
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.79 E-value=1.4e-18 Score=150.21 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=98.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+|+|.+|||||||+++|++..+...+.+++.. .+ ...+. .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~------~~--~~~~~-----------------------~------ 44 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFE------NY--TASFE-----------------------I------ 44 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc------ce--EEEEE-----------------------E------
Confidence 57999999999999999999998877554443311 00 00000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~ 226 (324)
....+.+.||||+|++++.. +.. ..-..+|++++|+|..+. +... ..|...+ .
T Consensus 45 ------------~~~~v~L~iwDt~G~e~~~~-------l~~-~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~---~- 100 (222)
T cd04173 45 ------------DKRRIELNMWDTSGSSYYDN-------VRP-LAYPDSDAVLICFDISRPETLDSVLKKWQGET---Q- 100 (222)
T ss_pred ------------CCEEEEEEEEeCCCcHHHHH-------HhH-HhccCCCEEEEEEECCCHHHHHHHHHHHHHHH---H-
Confidence 02246788999999877521 111 111346888888887553 2222 2333221 1
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-hHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v~~l~ 305 (324)
....+.|+|||+||+|+....... ..+. .. . ...+..+.+..+..-....++++|||+++.| |+++|
T Consensus 101 ~~~~~~piiLVgnK~DL~~~~~~~---~~~~---~~-~-----~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F 168 (222)
T cd04173 101 EFCPNAKVVLVGCKLDMRTDLATL---RELS---KQ-R-----LIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVF 168 (222)
T ss_pred hhCCCCCEEEEEECcccccchhhh---hhhh---hc-c-----CCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHH
Confidence 123578999999999997532110 0000 00 0 0001111121111222335899999999985 99999
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
..+.....
T Consensus 169 ~~~~~~~~ 176 (222)
T cd04173 169 HVATVASL 176 (222)
T ss_pred HHHHHHHH
Confidence 99988653
No 130
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=1.7e-18 Score=144.36 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCC-----Cch---hHHHhHHHHHHHHh-------
Q 020549 165 HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA-----NPM---TFMSNMLYACSILY------- 228 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~-----~~~---~~~~~~~~~~~~~~------- 228 (324)
+..+.||||||+.+..... .....+...+ ..+|++++|+|+.... ... ..|...+ ....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 117 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADAILHVVDASEDDDIGGVDPLEDYEILNAEL---KLYDLETILGL 117 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHH--hccCEEEEEEeccCCccccccCHHHHHHHHHHHH---HHhhhhhHHHH
Confidence 5678999999985432111 1111222222 2368999999997653 222 2232222 1111
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+........+..... ......+++++||++|.|++++++.|
T Consensus 118 ~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 118 LTAKPVIYVLNKIDLDDAEELEEELVREL-------------------------ALEEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred HhhCCeEEEEEchhcCchhHHHHHHHHHH-------------------------hcCCCCCEEEEehhhhcCHHHHHHHH
Confidence 14799999999999987654332210000 11235679999999999999999998
Q ss_pred HHH
Q 020549 309 EES 311 (324)
Q Consensus 309 ~~~ 311 (324)
...
T Consensus 173 ~~~ 175 (176)
T cd01881 173 YEL 175 (176)
T ss_pred Hhh
Confidence 764
No 131
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.3e-18 Score=144.18 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=95.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|++|||||||+++|++..+......++. ....... +...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----~~~~~~~-------------------------~~~~--- 52 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG-----VDFMIKT-------------------------VEIK--- 52 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----eEEEEEE-------------------------EEEC---
Confidence 347899999999999999999997655432211110 0000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
.....+.+|||||+.++. . .....+ ..+|++++++|...... ....|. ..+.
T Consensus 53 ---------------~~~~~~~~~D~~g~~~~~--~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~---~~l~ 106 (169)
T cd04114 53 ---------------GEKIKLQIWDTAGQERFR--S----ITQSYY--RSANALILTYDITCEESFRCLPEWL---REIE 106 (169)
T ss_pred ---------------CEEEEEEEEECCCcHHHH--H----HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHH---HHHH
Confidence 113467899999986641 1 111122 33689999999865321 122332 2223
Q ss_pred HHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.+...+.|+++|+||+|+...... ....+.+. .. ...+++++||++|.|++++
T Consensus 107 ~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~-------------------------~~-~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 107 QYANNKVITILVGNKIDLAERREVSQQRAEEFS-------------------------DA-QDMYYLETSAKESDNVEKL 160 (169)
T ss_pred HhCCCCCeEEEEEECcccccccccCHHHHHHHH-------------------------HH-cCCeEEEeeCCCCCCHHHH
Confidence 334457999999999998754321 11111111 11 2367999999999999999
Q ss_pred HHHHHHHH
Q 020549 305 FKAVEESA 312 (324)
Q Consensus 305 ~~~i~~~~ 312 (324)
|+.|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998753
No 132
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=7.2e-19 Score=168.90 Aligned_cols=162 Identities=23% Similarity=0.237 Sum_probs=100.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|.+|||||||+|+|++..... +...++.+ ++.+. +...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------v~~~~gvT----~d~~~--------------~~~~---- 82 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------VEDVPGVT----RDRVS--------------YDAE---- 82 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------ccCCCCCC----EeeEE--------------EEEE----
Confidence 34789999999999999999999865431 22222222 11100 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+..+.||||||+... .......+..... -..+|+++||+|++.+....+. ....
T Consensus 83 ---------------~~~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~-----~i~~ 140 (472)
T PRK03003 83 ---------------WNGRRFTVVDTGGWEPD--AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDE-----AVAR 140 (472)
T ss_pred ---------------ECCcEEEEEeCCCcCCc--chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHH
Confidence 22557899999998642 1112112222211 1347999999999887654331 1123
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.+...++|+|+|+||+|+...... . ..+. . .....+++|||++|.|+++|+
T Consensus 141 ~l~~~~~piilV~NK~Dl~~~~~~--~-~~~~-------------------------~-~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 141 VLRRSGKPVILAANKVDDERGEAD--A-AALW-------------------------S-LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred HHHHcCCCEEEEEECccCCccchh--h-HHHH-------------------------h-cCCCCeEEEEcCCCCCcHHHH
Confidence 444578999999999998643210 1 0000 0 122346799999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
+.|.+.+++
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999988765
No 133
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=1.1e-18 Score=146.88 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=93.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
+...+|+++|++|||||||++++....+.. .. |+.. ..+.. ++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~-------~T~~-~~~~~-~~--------------------------- 57 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TI-------PTIG-FNVET-VE--------------------------- 57 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cC-------Cccc-cceEE-EE---------------------------
Confidence 345789999999999999999997654431 11 1110 00000 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-H
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-S 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~ 225 (324)
..+..+.+|||||+.++. . ....++ ..+|++|||+|+.+... ...+...+..+ .
T Consensus 58 ----------------~~~~~~~l~D~~G~~~~~--~----~~~~~~--~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~ 112 (182)
T PTZ00133 58 ----------------YKNLKFTMWDVGGQDKLR--P----LWRHYY--QNTNGLIFVVDSNDRER-IGDAREELERMLS 112 (182)
T ss_pred ----------------ECCEEEEEEECCCCHhHH--H----HHHHHh--cCCCEEEEEEeCCCHHH-HHHHHHHHHHHHh
Confidence 125678999999986641 1 111122 23689999999864211 11111112111 1
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~ 303 (324)
.-...+.|+++|+||+|+.......+....+. . .+. ....++++||++|.|+++
T Consensus 113 ~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~---------------------~---~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 113 EDELRDAVLLVFANKQDLPNAMSTTEVTEKLG---------------------L---HSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred CHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhC---------------------C---CcccCCcEEEEeeeCCCCCCHHH
Confidence 11114689999999999865321111111110 0 001 123577899999999999
Q ss_pred HHHHHHHHHHH
Q 020549 304 YFKAVEESAQE 314 (324)
Q Consensus 304 l~~~i~~~~~~ 314 (324)
+|+.|.+.+..
T Consensus 169 ~~~~l~~~i~~ 179 (182)
T PTZ00133 169 GLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 134
>PLN03110 Rab GTPase; Provisional
Probab=99.79 E-value=5e-19 Score=153.10 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=99.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|++|||||||+++|.+..+...+.+++ ++...... +...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~-----g~~~~~~~-------------------------v~~~--- 57 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-----GVEFATRT-------------------------LQVE--- 57 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----eEEEEEEE-------------------------EEEC---
Confidence 45789999999999999999999876653222111 00000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. .....+ ..++++++|+|.... +.....|.. .+.
T Consensus 58 ---------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~---~~~ 111 (216)
T PLN03110 58 ---------------GKTVKAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKRQTFDNVQRWLR---ELR 111 (216)
T ss_pred ---------------CEEEEEEEEECCCcHHHHH------HHHHHh--CCCCEEEEEEECCChHHHHHHHHHHH---HHH
Confidence 1245788999999877521 111222 246888999987543 222223322 222
Q ss_pred HHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.....+.|+++|+||+|+...... .+....+. . ....+++++||++|.|++++
T Consensus 112 ~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~-------------------------~-~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 112 DHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA-------------------------E-KEGLSFLETSALEATNVEKA 165 (216)
T ss_pred HhCCCCCeEEEEEEChhcccccCCCHHHHHHHH-------------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence 233357999999999998653221 11111110 1 12578999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
|+.|.+.+..
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 135
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.79 E-value=1e-18 Score=143.71 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=92.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+.....++. +. .+.. . .+...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~~---~~~~----~------------------~~~~~----- 45 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATI-----GV---DFKV----K------------------TLTVD----- 45 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcc-----cc---eEEE----E------------------EEEEC-----
Confidence 479999999999999999999876543211100 00 0000 0 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+..+.. . ....+ ..+|++++++|...... ....|...+. ...
T Consensus 46 -------------~~~~~~~l~D~~g~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~--~~~ 102 (161)
T cd01863 46 -------------GKKVKLAIWDTAGQERFRT---L---TSSYY--RGAQGVILVYDVTRRDTFTNLETWLNELE--TYS 102 (161)
T ss_pred -------------CEEEEEEEEECCCchhhhh---h---hHHHh--CCCCEEEEEEECCCHHHHHhHHHHHHHHH--HhC
Confidence 1235789999999866421 1 11111 24689999999764322 1222222111 122
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+.......+ ....+. . ....+++++||++|.|++++++.
T Consensus 103 ~~~~~~~~iv~nK~D~~~~~~~~~---~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 103 TNNDIVKMLVGNKIDKENREVTRE---EGLKFA----------------------R-KHNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred CCCCCcEEEEEECCcccccccCHH---HHHHHH----------------------H-HcCCEEEEEecCCCCCHHHHHHH
Confidence 245789999999999984321111 111111 1 12468999999999999999999
Q ss_pred HHHH
Q 020549 308 VEES 311 (324)
Q Consensus 308 i~~~ 311 (324)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd01863 157 LVEK 160 (161)
T ss_pred HHHh
Confidence 8764
No 136
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.79 E-value=2.2e-18 Score=167.93 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=102.2
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...++++|+++|++|+|||||+++|.+..+.......+ +.++. .....
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GI------------T~~ig--------------------~~~v~ 130 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGI------------TQHIG--------------------AYHVE 130 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCce------------eecce--------------------EEEEE
Confidence 34577889999999999999999998875543211100 00000 00000
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
+ .....+.||||||+++|.. ...+. ...+|++++|+|+.++..+++. ..+
T Consensus 131 ---~--------------~~~~~i~~iDTPGhe~F~~------~r~rg--a~~aDiaILVVda~dgv~~qT~-----e~i 180 (587)
T TIGR00487 131 ---N--------------EDGKMITFLDTPGHEAFTS------MRARG--AKVTDIVVLVVAADDGVMPQTI-----EAI 180 (587)
T ss_pred ---E--------------CCCcEEEEEECCCCcchhh------HHHhh--hccCCEEEEEEECCCCCCHhHH-----HHH
Confidence 0 0122789999999887622 11111 2446999999999888766552 223
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+...++|+|+|+||+|+..... ......+. ..+...+.|....+++++||++|+|+++|
T Consensus 181 ~~~~~~~vPiIVviNKiDl~~~~~-e~v~~~L~------------------~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 181 SHAKAANVPIIVAINKIDKPEANP-DRVKQELS------------------EYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred HHHHHcCCCEEEEEECcccccCCH-HHHHHHHH------------------HhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 445567899999999999964321 11111111 01111113333468999999999999999
Q ss_pred HHHHHH
Q 020549 305 FKAVEE 310 (324)
Q Consensus 305 ~~~i~~ 310 (324)
++.|..
T Consensus 242 l~~I~~ 247 (587)
T TIGR00487 242 LDMILL 247 (587)
T ss_pred HHhhhh
Confidence 999875
No 137
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.3e-19 Score=136.38 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=114.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
-.+++.|+|.+.+|||||+.+.++..|...+..++ +.+.-+ . .+..+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKv-----------K------------------Tvyr~--- 66 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKV-----------K------------------TVYRS--- 66 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEE-----------e------------------Eeeec---
Confidence 45689999999999999999999998876543332 111100 0 01111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.+.+++++|||+|++++. .....+++.+.+-+++|.+.+.+++....-|...+ ...
T Consensus 67 ---------------~kRiklQiwDTagqEryr------tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI---kty 122 (193)
T KOG0093|consen 67 ---------------DKRIKLQIWDTAGQERYR------TITTAYYRGAMGFILMYDITNEESFNSVQDWITQI---KTY 122 (193)
T ss_pred ---------------ccEEEEEEEecccchhhh------HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh---eee
Confidence 346799999999998862 23444555566667777777777777766665444 445
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+|+|+||||+.+...+. .+. +..|++++| .+++++|||.+.||+.+|+.
T Consensus 123 sw~naqvilvgnKCDmd~eRvis--~e~--------------g~~l~~~LG---------fefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 123 SWDNAQVILVGNKCDMDSERVIS--HER--------------GRQLADQLG---------FEFFETSAKENINVKQVFER 177 (193)
T ss_pred eccCceEEEEecccCCccceeee--HHH--------------HHHHHHHhC---------hHHhhhcccccccHHHHHHH
Confidence 56789999999999998754321 111 233444443 35677999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 308 VEESAQEFME 317 (324)
Q Consensus 308 i~~~~~~~~~ 317 (324)
+...+-+...
T Consensus 178 lv~~Ic~kms 187 (193)
T KOG0093|consen 178 LVDIICDKMS 187 (193)
T ss_pred HHHHHHHHhh
Confidence 9998866543
No 138
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=2.1e-18 Score=146.47 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeeccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D 242 (324)
.+.++.|+||||+.++.. .+...+ ..+|++++|||+..+...++. ..+..+...++| +|+|+||+|
T Consensus 63 ~~~~i~~iDtPG~~~~~~------~~~~~~--~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 63 ANRHYAHVDCPGHADYIK------NMITGA--AQMDGAILVVSATDGPMPQTR-----EHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CCeEEEEEECcCHHHHHH------HHHHHh--hhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCcEEEEEeCCC
Confidence 356889999999765411 111111 347999999999988766542 223455567787 678999999
Q ss_pred cCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCCh
Q 020549 243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv 301 (324)
++......+ ..+++..+...+ .+ ...++++|+||++|.|+
T Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~-------------------g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 130 MVDDEELLELVEMEVRELLSKY-------------------GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCCcHHHHHHHHHHHHHHHHHh-------------------cccccCCeEEEeeCccccCC
Confidence 975443222 222333222211 11 13489999999999985
No 139
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.79 E-value=1.6e-18 Score=147.14 Aligned_cols=162 Identities=19% Similarity=0.278 Sum_probs=94.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.+|+++|++|||||||+++|++..+.. .+..++ +. .+.. . . +..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~-~~-------~~~~----~-~-----------------~~~----- 45 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTI-GA-------AFVA----K-R-----------------MVV----- 45 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccce-ee-------EEEE----E-E-----------------EEE-----
Confidence 379999999999999999999876653 111111 00 0000 0 0 000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~ 226 (324)
.+....+.||||||+.++.. +...+ -..+|++++|+|...... ....|...+ ..
T Consensus 46 -------------~~~~~~l~i~D~~G~~~~~~-------~~~~~-~~~~d~iilv~d~~~~~s~~~~~~~~~~i---~~ 101 (193)
T cd04118 46 -------------GERVVTLGIWDTAGSERYEA-------MSRIY-YRGAKAAIVCYDLTDSSSFERAKFWVKEL---QN 101 (193)
T ss_pred -------------CCEEEEEEEEECCCchhhhh-------hhHhh-cCCCCEEEEEEECCCHHHHHHHHHHHHHH---Hh
Confidence 01234678999999866511 11111 124689999998865321 122332222 21
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHH--HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWM--QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
. ..+.|+++|+||+|+.......... .....+.. . ...+++++||++|.|++++
T Consensus 102 ~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 102 L-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD---------------------E--IKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred c-CCCCCEEEEEEcccccccccccCccCHHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHH
Confidence 1 2368999999999986532110000 11111100 1 1367899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
|+.|.+.+..
T Consensus 158 ~~~i~~~~~~ 167 (193)
T cd04118 158 FQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 140
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7e-19 Score=137.31 Aligned_cols=165 Identities=16% Similarity=0.286 Sum_probs=112.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
..-+++.++|+.|.|||.|+.+++..++.....-++ .++...+ |
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi--------------GveFgSr-----------------I----- 50 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI--------------GVEFGSR-----------------I----- 50 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhccccccee--------------eeeecce-----------------e-----
Confidence 345789999999999999999999998875332211 1110100 0
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
+....+.++++||||+||++|. .....+.+.+...++||.+.++++++....| +..++.
T Consensus 51 ------------inVGgK~vKLQIWDTAGQErFR------SVtRsYYRGAAGAlLVYD~TsrdsfnaLtnW---L~DaR~ 109 (214)
T KOG0086|consen 51 ------------VNVGGKTVKLQIWDTAGQERFR------SVTRSYYRGAAGALLVYDITSRDSFNALTNW---LTDART 109 (214)
T ss_pred ------------eeecCcEEEEEEeecccHHHHH------HHHHHHhccccceEEEEeccchhhHHHHHHH---HHHHHh
Confidence 0111346789999999999982 1333444555556889999999999888878 445578
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
+...++.+|+++||.||.....+. +.+ -. .++++ ....+.++||++|+||++.|-
T Consensus 110 lAs~nIvviL~GnKkDL~~~R~Vt-flE-As--------------~FaqE---------nel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 110 LASPNIVVILCGNKKDLDPEREVT-FLE-AS--------------RFAQE---------NELMFLETSALTGENVEEAFL 164 (214)
T ss_pred hCCCcEEEEEeCChhhcChhhhhh-HHH-HH--------------hhhcc---------cceeeeeecccccccHHHHHH
Confidence 888899999999999998765331 111 01 01111 124678899999999999998
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
...+.+.
T Consensus 165 ~c~~tIl 171 (214)
T KOG0086|consen 165 KCARTIL 171 (214)
T ss_pred HHHHHHH
Confidence 8777654
No 141
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=1.1e-18 Score=145.13 Aligned_cols=163 Identities=14% Similarity=0.155 Sum_probs=96.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccC-CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
++.++|+++|.+|||||||+++|++..+. ..+.+++. ..+... .+...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~------~~~~~~------------------------~~~~~- 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK------PRYAVN------------------------TVEVY- 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC------cceEEE------------------------EEEEC-
Confidence 45688999999999999999999998775 33322210 000000 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
+....+.+||++|+.++.. ... .++ ..+|++++|+|..+.. . +......+.
T Consensus 51 -----------------~~~~~l~~~d~~g~~~~~~--~~~----~~~--~~~d~~llv~d~~~~~---s-~~~~~~~~~ 101 (169)
T cd01892 51 -----------------GQEKYLILREVGEDEVAIL--LND----AEL--AACDVACLVYDSSDPK---S-FSYCAEVYK 101 (169)
T ss_pred -----------------CeEEEEEEEecCCcccccc--cch----hhh--hcCCEEEEEEeCCCHH---H-HHHHHHHHH
Confidence 1234678999999877521 100 111 3469999999986531 1 111111112
Q ss_pred HH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.+ ...++|+++|+||+|+.+.... .......+. ..+...+++++||++|.|++++
T Consensus 102 ~~~~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 102 KYFMLGEIPCLFVAAKADLDEQQQR--YEVQPDEFC----------------------RKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred HhccCCCCeEEEEEEcccccccccc--cccCHHHHH----------------------HHcCCCCCEEEEeccCccHHHH
Confidence 22 1247999999999998654211 001111111 1122235689999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
|+.|.+.+.
T Consensus 158 f~~l~~~~~ 166 (169)
T cd01892 158 FTKLATAAQ 166 (169)
T ss_pred HHHHHHHhh
Confidence 999998764
No 142
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=157.62 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=106.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
..-+.|+++|+.|||||||+|+|++...... ...+.+.||+. | .+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~-d~LFATLdptt-----------R-------------------~~~--- 235 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA-DQLFATLDPTT-----------R-------------------RIE--- 235 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecc-ccccccccCce-----------e-------------------EEE---
Confidence 3557899999999999999999996533211 11111111111 0 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-----cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
...+..+++-||.|+.+- +...+...|++ ..+|++++|||+++. ..........
T Consensus 236 ---------------l~~g~~vlLtDTVGFI~~-----LP~~LV~AFksTLEE~~~aDlllhVVDaSdp-~~~~~~~~v~ 294 (411)
T COG2262 236 ---------------LGDGRKVLLTDTVGFIRD-----LPHPLVEAFKSTLEEVKEADLLLHVVDASDP-EILEKLEAVE 294 (411)
T ss_pred ---------------eCCCceEEEecCccCccc-----CChHHHHHHHHHHHHhhcCCEEEEEeecCCh-hHHHHHHHHH
Confidence 022578999999998663 33344444443 358999999999886 3333333334
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
..+..+...++|+|+|.||+|++..... ...+. ... ...+++||++|.|+
T Consensus 295 ~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~-------------------------~~~--~~~v~iSA~~~~gl 344 (411)
T COG2262 295 DVLAEIGADEIPIILVLNKIDLLEDEEI---LAELE-------------------------RGS--PNPVFISAKTGEGL 344 (411)
T ss_pred HHHHHcCCCCCCEEEEEecccccCchhh---hhhhh-------------------------hcC--CCeEEEEeccCcCH
Confidence 3344444467899999999999876531 11111 111 15899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQEF 315 (324)
Q Consensus 302 ~~l~~~i~~~~~~~ 315 (324)
+.|++.|.+.++..
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988753
No 143
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=8.7e-19 Score=151.02 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=97.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+...+.+++ +.... ...+.+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti-----~~d~~--~~~i~~~---------------------------- 47 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV-----GVDFF--SRLIEIE---------------------------- 47 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee-----ceEEE--EEEEEEC----------------------------
Confidence 689999999999999999999887654322211 00000 0000000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
. .....+.||||||+.++.. .....+ ..+|++++|+|..+. +.....|...+. ...
T Consensus 48 ~------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~Sf~~l~~~~~~i~--~~~ 105 (211)
T cd04111 48 P------------GVRIKLQLWDTAGQERFRS------ITRSYY--RNSVGVLLVFDITNRESFEHVHDWLEEAR--SHI 105 (211)
T ss_pred C------------CCEEEEEEEeCCcchhHHH------HHHHHh--cCCcEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence 0 1235788999999876411 111122 335888888887643 222223322211 111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
.....|+++|+||+|+....... .+....+. ... ..+++++||++|.||+++|+.
T Consensus 106 ~~~~~~iilvgNK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 106 QPHRPVFILVGHKCDLESQRQVT--REEAEKLA----------------------KDL-GMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred CCCCCeEEEEEEccccccccccC--HHHHHHHH----------------------HHh-CCEEEEEeCCCCCCHHHHHHH
Confidence 22357789999999997642210 01111111 111 378999999999999999999
Q ss_pred HHHHHHHHH
Q 020549 308 VEESAQEFM 316 (324)
Q Consensus 308 i~~~~~~~~ 316 (324)
|.+.+....
T Consensus 161 l~~~~~~~~ 169 (211)
T cd04111 161 LTQEIYERI 169 (211)
T ss_pred HHHHHHHHh
Confidence 999876543
No 144
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=1e-18 Score=146.57 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=92.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+|+|++|||||||+++|++..+.....+++ . ..+.. .+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~-------~-~~~~~-----------------------~~~~~----- 45 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI-------E-NTFSK-----------------------IIRYK----- 45 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcch-------h-hhEEE-----------------------EEEEC-----
Confidence 479999999999999999999876543221111 0 00000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. ... ..+ ..++.+++++|..... .....|... .++..
T Consensus 46 -------------~~~~~~~l~D~~g~~~~~~---~~~---~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~ 102 (180)
T cd04137 46 -------------GQDYHLEIVDTAGQDEYSI---LPQ---KYS--IGIHGYILVYSVTSRKSFEVVKVIYDK--ILDML 102 (180)
T ss_pred -------------CEEEEEEEEECCChHhhHH---HHH---HHH--hhCCEEEEEEECCCHHHHHHHHHHHHH--HHHhc
Confidence 1135678999999876521 111 111 2246677777765432 222222111 11222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+|+|+||+|+....... ......+.+ . ...+++++||++|.|+++++..
T Consensus 103 ~~~~~p~ilv~NK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 103 GKESVPIVLVGNKSDLHTQRQVS--TEEGKELAE---------------------S--WGAAFLESSARENENVEEAFEL 157 (180)
T ss_pred CCCCCCEEEEEEchhhhhcCccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHH
Confidence 33578999999999987532110 001111110 1 1367999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+..
T Consensus 158 l~~~~~~ 164 (180)
T cd04137 158 LIEEIEK 164 (180)
T ss_pred HHHHHHH
Confidence 9988764
No 145
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=6.3e-18 Score=143.69 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=102.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+..++|+++|.+|||||||+++|++..+... +...++++ ..+. .
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~t-~~~~---------------------~-- 65 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLAR-----------TSKTPGRT-QLIN---------------------F-- 65 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc-----------ccCCCCce-eEEE---------------------E--
Confidence 44668899999999999999999998643211 11111111 0000 0
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhcc-CCcEEEEEEcCCCCCCchhHHHhH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~~-~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
+ ....++.||||||+..... +......+...+... ..+++++++|+..+......+
T Consensus 66 --~--------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--- 126 (196)
T PRK00454 66 --F--------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--- 126 (196)
T ss_pred --E--------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH---
Confidence 0 0135789999999643210 011111222233322 346888899987765544321
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
....+...++|+++|+||+|+.+..........+..... .. ..+++++||++|.|
T Consensus 127 --i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~---------------------~~--~~~~~~~Sa~~~~g 181 (196)
T PRK00454 127 --MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK---------------------FG--DDEVILFSSLKKQG 181 (196)
T ss_pred --HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH---------------------hc--CCceEEEEcCCCCC
Confidence 112344568999999999999876543333222221110 11 46899999999999
Q ss_pred hHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQE 314 (324)
Q Consensus 301 v~~l~~~i~~~~~~ 314 (324)
++++++.|.+.+.+
T Consensus 182 i~~l~~~i~~~~~~ 195 (196)
T PRK00454 182 IDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887653
No 146
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=1.8e-18 Score=144.60 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=91.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|++|+|||||+++|++..+.. .. ++.. .+. . .+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~-------~t~~-----~~~--~------------------~~~----- 55 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TS-------PTIG-----SNV--E------------------EIV----- 55 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cC-------Cccc-----cce--E------------------EEE-----
Confidence 35789999999999999999998765432 11 1110 000 0 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~ 226 (324)
.....+.||||||+.++.. .....+ ..+|+++||+|+++...-. .....+. .+..
T Consensus 56 ---------------~~~~~~~l~D~~G~~~~~~------~~~~~~--~~~d~vi~V~D~s~~~~~~-~~~~~l~~~~~~ 111 (174)
T cd04153 56 ---------------YKNIRFLMWDIGGQESLRS------SWNTYY--TNTDAVILVIDSTDRERLP-LTKEELYKMLAH 111 (174)
T ss_pred ---------------ECCeEEEEEECCCCHHHHH------HHHHHh--hcCCEEEEEEECCCHHHHH-HHHHHHHHHHhc
Confidence 1256789999999866411 111122 2468999999987642111 1111111 1111
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~ 305 (324)
....++|+++|+||+|+.......+..+.+. .. .. ....+++++||++|.||+++|
T Consensus 112 ~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~---------------------~~--~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 112 EDLRKAVLLVLANKQDLKGAMTPAEISESLG---------------------LT--SIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred hhhcCCCEEEEEECCCCCCCCCHHHHHHHhC---------------------cc--cccCCceEEEecccCCCCCHHHHH
Confidence 1124689999999999875311111111110 00 00 013478999999999999999
Q ss_pred HHHHH
Q 020549 306 KAVEE 310 (324)
Q Consensus 306 ~~i~~ 310 (324)
+.|.+
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99864
No 147
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=8.9e-19 Score=166.86 Aligned_cols=159 Identities=25% Similarity=0.283 Sum_probs=102.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+|+|++|||||||+|+|++..... +...++.+ +++.. +.+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~t----~d~~~--------------~~~~------- 43 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------VSDTPGVT----RDRKY--------------GDAE------- 43 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------ecCCCCcc----cCceE--------------EEEE-------
Confidence 48999999999999999999875321 22333332 11110 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
..+..+.||||||+.... ......+...... ..+|+++||+|+..+....+.. ....+.
T Consensus 44 ------------~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~ 104 (429)
T TIGR03594 44 ------------WGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLR 104 (429)
T ss_pred ------------ECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHH
Confidence 225678999999975431 1112222222211 3479999999999877665522 123445
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+...+.. ..++. .....+++++||++|.|++++++.+
T Consensus 105 ~~~~piilVvNK~D~~~~~~~---~~~~~--------------------------~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 105 KSGKPVILVANKIDGKKEDAV---AAEFY--------------------------SLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred HhCCCEEEEEECccCCccccc---HHHHH--------------------------hcCCCCeEEEeCCcCCChHHHHHHH
Confidence 568999999999998765421 11111 1234579999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
.+.++.
T Consensus 156 ~~~l~~ 161 (429)
T TIGR03594 156 LELLPE 161 (429)
T ss_pred HHhcCc
Confidence 988754
No 148
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=1.4e-18 Score=146.65 Aligned_cols=168 Identities=19% Similarity=0.171 Sum_probs=94.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..+|+++|.+|||||||+++|.+..+... . ++..... +...
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~-------~t~~~~~--------------------------~~~~--- 57 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-Q-------PTQHPTS--------------------------EELA--- 57 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-C-------Cccccce--------------------------EEEE---
Confidence 3558899999999999999999998754320 0 1110000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~ 225 (324)
..+.++.+|||||+..+. . ....++ ..+|.++||+|+++...- ......+. .+.
T Consensus 58 ----------------~~~~~~~~~D~~G~~~~~--~----~~~~~~--~~ad~ii~vvD~~~~~~~-~~~~~~l~~l~~ 112 (184)
T smart00178 58 ----------------IGNIKFTTFDLGGHQQAR--R----LWKDYF--PEVNGIVYLVDAYDKERF-AESKRELDALLS 112 (184)
T ss_pred ----------------ECCEEEEEEECCCCHHHH--H----HHHHHh--CCCCEEEEEEECCcHHHH-HHHHHHHHHHHc
Confidence 125678999999986641 1 111222 346999999999653211 11111111 111
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+++|+||+|+...-...+..+.+. +.. .....+. .......+++|||++|+|+++++
T Consensus 113 ~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~-l~~-----------~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~~~ 177 (184)
T smart00178 113 DEELATVPFLILGNKIDAPYAASEDELRYALG-LTN-----------TTGSKGK---VGVRPLEVFMCSVVRRMGYGEGF 177 (184)
T ss_pred ChhhcCCCEEEEEeCccccCCCCHHHHHHHcC-CCc-----------ccccccc---cCCceeEEEEeecccCCChHHHH
Confidence 11225789999999999864211111211111 000 0000000 00124579999999999999999
Q ss_pred HHHHHH
Q 020549 306 KAVEES 311 (324)
Q Consensus 306 ~~i~~~ 311 (324)
+.|...
T Consensus 178 ~wl~~~ 183 (184)
T smart00178 178 KWLSQY 183 (184)
T ss_pred HHHHhh
Confidence 999764
No 149
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.78 E-value=3.3e-18 Score=170.59 Aligned_cols=165 Identities=20% Similarity=0.300 Sum_probs=104.1
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...+++.|+|+|++|+|||||+++|.+..+..+....+ +.++ +...+.
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GI------------T~~i--------------------ga~~v~ 333 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGI------------TQHI--------------------GAYQVE 333 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCce------------eeec--------------------cEEEEE
Confidence 35678899999999999999999998765443211000 0000 000000
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+..+.||||||+..|.. ...+. ...+|++++|+|+.++..+++. ..+
T Consensus 334 ------------------~~~~~ItfiDTPGhe~F~~------m~~rg--a~~aDiaILVVdAddGv~~qT~-----e~i 382 (787)
T PRK05306 334 ------------------TNGGKITFLDTPGHEAFTA------MRARG--AQVTDIVVLVVAADDGVMPQTI-----EAI 382 (787)
T ss_pred ------------------ECCEEEEEEECCCCccchh------HHHhh--hhhCCEEEEEEECCCCCCHhHH-----HHH
Confidence 1245789999999887621 11111 1346999999999988766552 223
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+|+|+||+|+...+. ......+.. .+...+.|....+++++||++|.|+++|
T Consensus 383 ~~a~~~~vPiIVviNKiDl~~a~~-e~V~~eL~~------------------~~~~~e~~g~~vp~vpvSAktG~GI~eL 443 (787)
T PRK05306 383 NHAKAAGVPIIVAINKIDKPGANP-DRVKQELSE------------------YGLVPEEWGGDTIFVPVSAKTGEGIDEL 443 (787)
T ss_pred HHHHhcCCcEEEEEECccccccCH-HHHHHHHHH------------------hcccHHHhCCCceEEEEeCCCCCCchHH
Confidence 445567899999999999965321 111111110 0111113334578999999999999999
Q ss_pred HHHHHHH
Q 020549 305 FKAVEES 311 (324)
Q Consensus 305 ~~~i~~~ 311 (324)
++.|...
T Consensus 444 le~I~~~ 450 (787)
T PRK05306 444 LEAILLQ 450 (787)
T ss_pred HHhhhhh
Confidence 9999764
No 150
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=1.9e-18 Score=141.78 Aligned_cols=159 Identities=17% Similarity=0.247 Sum_probs=93.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|+|||||+++|++..+......++ . ..... . .+...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~-------~-~~~~~----~------------------~~~~~----- 45 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT-------Q-ASFFQ----K------------------TVNIG----- 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc-------c-eeEEE----E------------------EEEEC-----
Confidence 379999999999999999999876653211100 0 00000 0 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+..+.. +...+. ..+|++++|+|..+... ....| +..+...
T Consensus 46 -------------~~~~~~~~~D~~g~~~~~~-------~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~---~~~i~~~ 101 (162)
T cd04123 46 -------------GKRIDLAIWDTAGQERYHA-------LGPIYY-RDADGAILVYDITDADSFQKVKKW---IKELKQM 101 (162)
T ss_pred -------------CEEEEEEEEECCchHHHHH-------hhHHHh-ccCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence 1134688999999866521 111111 34689999999765432 11223 2222223
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+........ +....+.+ . .+.+++++||++|.|++++++.
T Consensus 102 ~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~---------------------~--~~~~~~~~s~~~~~gi~~~~~~ 156 (162)
T cd04123 102 RGNNISLVIVGNKIDLERQRVVSK--SEAEEYAK---------------------S--VGAKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred CCCCCeEEEEEECcccccccCCCH--HHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHH
Confidence 334789999999999875432100 11111110 1 2467899999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04123 157 LAKRM 161 (162)
T ss_pred HHHHh
Confidence 98764
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=2.1e-18 Score=140.71 Aligned_cols=155 Identities=19% Similarity=0.287 Sum_probs=95.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
+.+|+++|++|+|||||+++|.+..... ....+.++ .+... +. ..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~-~~~~~-----------------~~-~~---- 45 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAI------------VSDIAGTT-RDVIE-----------------ES-ID---- 45 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEe------------ccCCCCCc-cceEE-----------------EE-EE----
Confidence 4679999999999999999999864321 11111111 00000 00 00
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+.++.+|||||+.++..... ...+.+.. ....+|++++|+|+.......... .+ ..
T Consensus 46 --------------~~~~~~~i~DtpG~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~~---~~- 104 (157)
T cd04164 46 --------------IGGIPVRLIDTAGIRETEDEIE-KIGIERAREAIEEADLVLFVIDASRGLDEEDLE--IL---EL- 104 (157)
T ss_pred --------------eCCEEEEEEECCCcCCCcchHH-HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHH--HH---Hh-
Confidence 1245789999999876522111 11111111 113578999999998644333211 11 11
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..+.|+++|+||+|+...... . ......+++++||+++.|++++++.
T Consensus 105 -~~~~~vi~v~nK~D~~~~~~~------~--------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~ 151 (157)
T cd04164 105 -PADKPIIVVLNKSDLLPDSEL------L--------------------------SLLAGKPIIAISAKTGEGLDELKEA 151 (157)
T ss_pred -hcCCCEEEEEEchhcCCcccc------c--------------------------cccCCCceEEEECCCCCCHHHHHHH
Confidence 457999999999999865422 0 1123578999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 152 l~~~~ 156 (157)
T cd04164 152 LLELA 156 (157)
T ss_pred HHHhh
Confidence 88754
No 152
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.78 E-value=1.5e-18 Score=144.86 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=92.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|+|||||++++.+..+...+.+++.. .+... +...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~------~~~~~-------------------------~~~~----- 44 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD------NFSVV-------------------------VLVD----- 44 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee------eeeEE-------------------------EEEC-----
Confidence 47999999999999999999887665433322100 00000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++..... ..-..+|++++++|..+. +... ..|...+ ..
T Consensus 45 -------------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~---~~ 100 (173)
T cd04130 45 -------------GKPVRLQLCDTAGQDEFDKLRP--------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI---RK 100 (173)
T ss_pred -------------CEEEEEEEEECCCChhhccccc--------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHH---Hh
Confidence 1135678999999877522111 011346889999887653 3222 1232222 11
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
...+.|+++|+||+|+........ .+ ... +.+ ....+....+.......+++++||++|.||+++|+
T Consensus 101 -~~~~~piilv~nK~Dl~~~~~~~~---~~---~~~----~~~--~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 101 -HNPKAPIILVGTQADLRTDVNVLI---QL---ARY----GEK--PVSQSRAKALAEKIGACEYIECSALTQKNLKEVFD 167 (173)
T ss_pred -hCCCCCEEEEeeChhhccChhHHH---HH---hhc----CCC--CcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 124689999999999975431100 00 000 000 00000000011112234899999999999999999
Q ss_pred HHHH
Q 020549 307 AVEE 310 (324)
Q Consensus 307 ~i~~ 310 (324)
.+..
T Consensus 168 ~~~~ 171 (173)
T cd04130 168 TAIL 171 (173)
T ss_pred HHHh
Confidence 8764
No 153
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=1.3e-18 Score=142.71 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
...+.||||||+..+. .. ....+ ..+|++++|+|+.... .....+. ..........+.|+++|+||+|
T Consensus 42 ~~~~~i~D~~G~~~~~--~~----~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~--~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd00878 42 NVSFTVWDVGGQDKIR--PL----WKHYY--ENTNGIIFVVDSSDRERIEEAKEEL--HKLLNEEELKGVPLLIFANKQD 111 (158)
T ss_pred CEEEEEEECCCChhhH--HH----HHHHh--ccCCEEEEEEECCCHHHHHHHHHHH--HHHHhCcccCCCcEEEEeeccC
Confidence 4678999999987641 11 11111 2358999999997642 1111111 1111111235789999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
+.......+..+.+... . ......+++++||++|.|++++|+.|..
T Consensus 112 ~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 112 LPGALSVSELIEKLGLE---------------------K-ILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CccccCHHHHHHhhChh---------------------h-ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 98644222221111100 0 0112468999999999999999999864
No 154
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=2.1e-18 Score=168.76 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=79.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
+..+.||||||+++|.. .+...+ ..+|++++|||+.++..+++.. .+..+...++| +|+|+||+|+
T Consensus 49 ~~~v~~iDtPGhe~f~~------~~~~g~--~~aD~aILVVDa~~G~~~qT~e-----hl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFIS------NAIAGG--GGIDAALLVVDADEGVMTQTGE-----HLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHH------HHHhhh--ccCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCCC
Confidence 35788999999766521 111111 3479999999999887665532 22344556888 9999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
++.+......+++..+.+.. .+....+++++||++|.|+++++..|...+..
T Consensus 116 v~~~~~~~~~~ei~~~l~~~-------------------~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 116 VNEEEIKRTEMFMKQILNSY-------------------IFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHh-------------------CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 87654333333333221110 11125789999999999999999999887754
No 155
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=1.7e-18 Score=146.56 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=92.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|++|||||||+++|.+..+.. +.+ +.... .+.+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~-------T~~~~--------------------------~~~i~--- 59 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVP-------TLHPT--------------------------SEELT--- 59 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC-------ccCcc--------------------------eEEEE---
Confidence 356889999999999999999999865431 110 01000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~ 225 (324)
..+..+.+|||||+.++. . .....+ ..+|.+++|+|..+...- ......+.. +.
T Consensus 60 ----------------~~~~~~~l~D~~G~~~~~--~----~~~~~~--~~ad~iilV~D~~~~~s~-~~~~~~~~~i~~ 114 (190)
T cd00879 60 ----------------IGNIKFKTFDLGGHEQAR--R----LWKDYF--PEVDGIVFLVDAADPERF-QESKEELDSLLS 114 (190)
T ss_pred ----------------ECCEEEEEEECCCCHHHH--H----HHHHHh--ccCCEEEEEEECCcHHHH-HHHHHHHHHHHc
Confidence 124578899999976641 1 111222 235899999998653111 111111111 11
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....+.|+++|+||+|+.......+....+. . . ..+........+......++++|||++|+|++++|
T Consensus 115 ~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~----~---~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 115 DEELANVPFLILGNKIDLPGAVSEEELRQALG----L---Y----GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred CccccCCCEEEEEeCCCCCCCcCHHHHHHHhC----c---c----cccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 11235699999999999864321111111110 0 0 00000000000011123578999999999999999
Q ss_pred HHHHHH
Q 020549 306 KAVEES 311 (324)
Q Consensus 306 ~~i~~~ 311 (324)
+.|.+.
T Consensus 184 ~~l~~~ 189 (190)
T cd00879 184 RWLSQY 189 (190)
T ss_pred HHHHhh
Confidence 999765
No 156
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=1.8e-18 Score=147.81 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=96.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|++|||||||+++|.+..+...+.+++ ++ .+.. .. +...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~-----~~-~~~~-~~-----------------------~~~~--- 51 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-----GV-DFKI-RT-----------------------VEIN--- 51 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc-----cc-eeEE-EE-----------------------EEEC---
Confidence 35789999999999999999999876653322211 00 0000 00 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+..+.. ....++ ..++++++|+|..+.. .....|...+ .
T Consensus 52 ---------------~~~~~l~l~D~~G~~~~~~------~~~~~~--~~a~~iilv~D~~~~~s~~~~~~~~~~i---~ 105 (199)
T cd04110 52 ---------------GERVKLQIWDTAGQERFRT------ITSTYY--RGTHGVIVVYDVTNGESFVNVKRWLQEI---E 105 (199)
T ss_pred ---------------CEEEEEEEEeCCCchhHHH------HHHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence 1134688999999876521 111122 2357899999986532 2222232211 1
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
. .....|+++|+||+|+....... ......+.+ . ...+++++||++|.||+++|
T Consensus 106 ~-~~~~~piivVgNK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 106 Q-NCDDVCKVLVGNKNDDPERKVVE--TEDAYKFAG---------------------Q--MGISLFETSAKENINVEEMF 159 (199)
T ss_pred H-hCCCCCEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEECCCCcCHHHHH
Confidence 1 12468999999999997543210 011111110 1 13679999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
+.|.+.+..
T Consensus 160 ~~l~~~~~~ 168 (199)
T cd04110 160 NCITELVLR 168 (199)
T ss_pred HHHHHHHHH
Confidence 999998754
No 157
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=1.2e-18 Score=144.30 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=90.7
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChH
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (324)
|+++|++|||||||+++|.+..+...+.+++. .. .. .+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g-----~~---~~-~i--------------------------------- 39 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG-----FN---SV-AI--------------------------------- 39 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCC-----cc---eE-EE---------------------------------
Confidence 79999999999999999998765433222110 00 00 00
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh-hc
Q 020549 152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KT 230 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~ 230 (324)
......+.||||||+.++.. ....++ ..+|+++||+|..+...- ..+...+. ..+. ..
T Consensus 40 ----------~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~ii~V~D~t~~~s~-~~~~~~l~--~~~~~~~ 98 (164)
T cd04162 40 ----------PTQDAIMELLEIGGSQNLRK------YWKRYL--SGSQGLIFVVDSADSERL-PLARQELH--QLLQHPP 98 (164)
T ss_pred ----------eeCCeEEEEEECCCCcchhH------HHHHHH--hhCCEEEEEEECCCHHHH-HHHHHHHH--HHHhCCC
Confidence 02356789999999877521 111122 236899999998664311 11111121 1111 25
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc------CCChHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS------GAGIEAY 304 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~------g~gv~~l 304 (324)
++|+++|+||+|+.......++...+. ...++. .....++++||++ ++||+++
T Consensus 99 ~~piilv~NK~Dl~~~~~~~~i~~~~~------------~~~~~~---------~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 99 DLPLVVLANKQDLPAARSVQEIHKELE------------LEPIAR---------GRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCcEEEEEeCcCCcCCCCHHHHHHHhC------------ChhhcC---------CCceEEEEeeecCCCChhHHHHHHHH
Confidence 799999999999876532222111110 000000 0135577788887 9999999
Q ss_pred HHHHHH
Q 020549 305 FKAVEE 310 (324)
Q Consensus 305 ~~~i~~ 310 (324)
|+.++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 998864
No 158
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=1.4e-18 Score=141.81 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=90.7
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChH
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (324)
|+++|++|||||||+++|.+..+.....+++ .++.. ...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~~-------------------~~~-------- 40 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--------------GFNMR-------------------KVT-------- 40 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--------------CcceE-------------------EEE--------
Confidence 7999999999999999999886653221110 00000 000
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHHHhhc
Q 020549 152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKT 230 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (324)
.....+.+|||||+.++. . .....+ ..+|++++|+|+........ ....+. ........
T Consensus 41 -----------~~~~~~~~~D~~g~~~~~--~----~~~~~~--~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~ 100 (159)
T cd04159 41 -----------KGNVTLKVWDLGGQPRFR--S----MWERYC--RGVNAIVYVVDAADRTALEA-AKNELHDLLEKPSLE 100 (159)
T ss_pred -----------ECCEEEEEEECCCCHhHH--H----HHHHHH--hcCCEEEEEEECCCHHHHHH-HHHHHHHHHcChhhc
Confidence 124578899999986641 1 111222 33689999999865321111 001111 01111125
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
++|+++|+||+|+............+. +. . ......+++++||++|.|++++++.|.+
T Consensus 101 ~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~------------------~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 101 GIPLLVLGNKNDLPGALSVDELIEQMN-LK------------------S---ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred CCCEEEEEeCccccCCcCHHHHHHHhC-cc------------------c---ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 789999999999876532222211110 00 0 0012357899999999999999999875
No 159
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.77 E-value=1e-18 Score=144.47 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHh--hcCCCeEEEeec
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILY--KTRLPLVLAFNK 240 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK 240 (324)
...+.||||||+.+++.. .....++ .+|++++++|.... +.....|...+ .... ..+.|+++|+||
T Consensus 46 ~~~~~i~D~~g~~~~~~~-----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~~~piilv~nK 115 (165)
T cd04146 46 QVSLEILDTAGQQQADTE-----QLERSIR--WADGFVLVYSITDRSSFDEISQLKQLI---REIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEEEECCCCcccccc-----hHHHHHH--hCCEEEEEEECCCHHHHHHHHHHHHHH---HHHhcCCCCCCEEEEEEC
Confidence 346789999998752111 1112222 35888888888654 22223343322 2222 347999999999
Q ss_pred cccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC-CChHHHHHHHHHHH
Q 020549 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG-AGIEAYFKAVEESA 312 (324)
Q Consensus 241 ~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g-~gv~~l~~~i~~~~ 312 (324)
+|+.....+. .+....+. .- ...+++++||++| .||+++|..|++.+
T Consensus 116 ~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 116 ADLLHYRQVS--TEEGEKLA----------------------SE-LGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CchHHhCccC--HHHHHHHH----------------------HH-cCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 9986432110 00111111 11 1368999999999 59999999998765
No 160
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.77 E-value=3.7e-18 Score=168.80 Aligned_cols=170 Identities=18% Similarity=0.314 Sum_probs=104.8
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...+++.|+|+|++|+|||||+++|.+..+.......+ +.++. .....
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~Gi------------Tq~i~--------------------~~~v~ 287 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGI------------TQKIG--------------------AYEVE 287 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcc------------ccccc--------------------eEEEE
Confidence 35677899999999999999999998876543211100 00000 00000
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
+.. ......+.||||||+..|.. .+.+.+ ..+|++++|||+.++..+++. ..+
T Consensus 288 ---~~~-----------~~~~~kItfiDTPGhe~F~~------mr~rg~--~~aDiaILVVDA~dGv~~QT~-----E~I 340 (742)
T CHL00189 288 ---FEY-----------KDENQKIVFLDTPGHEAFSS------MRSRGA--NVTDIAILIIAADDGVKPQTI-----EAI 340 (742)
T ss_pred ---EEe-----------cCCceEEEEEECCcHHHHHH------HHHHHH--HHCCEEEEEEECcCCCChhhH-----HHH
Confidence 000 01246899999999876521 111122 346999999999888766542 223
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+...++|+|+|+||+|+..... ....+.+.. .+...+.+....+++++||++|.|+++|
T Consensus 341 ~~~k~~~iPiIVViNKiDl~~~~~-e~v~~eL~~------------------~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 341 NYIQAANVPIIVAINKIDKANANT-ERIKQQLAK------------------YNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred HHHHhcCceEEEEEECCCccccCH-HHHHHHHHH------------------hccchHhhCCCceEEEEECCCCCCHHHH
Confidence 445567899999999999975321 111111110 0000112223478999999999999999
Q ss_pred HHHHHHHH
Q 020549 305 FKAVEESA 312 (324)
Q Consensus 305 ~~~i~~~~ 312 (324)
++.|....
T Consensus 402 le~I~~l~ 409 (742)
T CHL00189 402 LETILLLA 409 (742)
T ss_pred HHhhhhhh
Confidence 99998764
No 161
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.77 E-value=5.5e-18 Score=133.86 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=111.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++.++||++-+|||+|++.++...++.-..+ ++ .+|...+. +.+.+
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdp-------tv-------gvdffarl--------ie~~p------------ 54 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDP-------TV-------GVDFFARL--------IELRP------------ 54 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCC-------cc-------chHHHHHH--------HhcCC------------
Confidence 5789999999999999999999988753322 21 11111110 00110
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
+..+++++|||+||++|. .+...+.+.+..-++||.+.++++++....|..+- ......
T Consensus 55 -------------g~riklqlwdtagqerfr------sitksyyrnsvgvllvyditnr~sfehv~~w~~ea--~m~~q~ 113 (213)
T KOG0091|consen 55 -------------GYRIKLQLWDTAGQERFR------SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEA--AMATQG 113 (213)
T ss_pred -------------CcEEEEEEeeccchHHHH------HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHH--HHhcCC
Confidence 346789999999999982 24444556666678899999999999888785332 122222
Q ss_pred cCCCe-EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 230 TRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 230 ~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+++ .+|+.|+||.+...+ ..++-+.+++ ..++.+|++||++|.||++.|..|
T Consensus 114 P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa-----------------------~hgM~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 114 PDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAA-----------------------SHGMAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred CCeeEEEEeccccchhhhccc--cHHHHHHHHH-----------------------hcCceEEEecccCCCcHHHHHHHH
Confidence 44454 669999999976543 1222222222 236789999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
.+.+-.
T Consensus 169 aqeIf~ 174 (213)
T KOG0091|consen 169 AQEIFQ 174 (213)
T ss_pred HHHHHH
Confidence 887643
No 162
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=2.4e-18 Score=143.10 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=95.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|++..+......++ +.. +.. . .+...
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~---- 47 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI-----GVD---FRE----R------------------TVEID---- 47 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce-----eEE---EEE----E------------------EEEEC----
Confidence 3689999999999999999999876654322211 000 000 0 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++. .. +...+ ...+|++++|+|..... .....|...+. ..
T Consensus 48 --------------~~~~~~~i~Dt~G~~~~~--~~----~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--~~ 104 (170)
T cd04115 48 --------------GERIKVQLWDTAGQERFR--KS----MVQHY-YRNVHAVVFVYDVTNMASFHSLPSWIEECE--QH 104 (170)
T ss_pred --------------CeEEEEEEEeCCChHHHH--Hh----hHHHh-hcCCCEEEEEEECCCHHHHHhHHHHHHHHH--Hh
Confidence 124578899999987652 11 11111 13358889999886532 22233432221 11
Q ss_pred HhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc---CCChH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS---GAGIE 302 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~---g~gv~ 302 (324)
....++|+++|+||+|+...... .+....+. +. ...+++++||++ +.|++
T Consensus 105 ~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-------------------------~~-~~~~~~e~Sa~~~~~~~~i~ 158 (170)
T cd04115 105 SLPNEVPRILVGNKCDLREQIQVPTDLAQRFA-------------------------DA-HSMPLFETSAKDPSENDHVE 158 (170)
T ss_pred cCCCCCCEEEEEECccchhhcCCCHHHHHHHH-------------------------HH-cCCcEEEEeccCCcCCCCHH
Confidence 12356999999999998754321 11111111 11 237899999999 89999
Q ss_pred HHHHHHHHHH
Q 020549 303 AYFKAVEESA 312 (324)
Q Consensus 303 ~l~~~i~~~~ 312 (324)
++|..+.+.+
T Consensus 159 ~~f~~l~~~~ 168 (170)
T cd04115 159 AIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 163
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=5.7e-18 Score=137.99 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=92.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+......+. ...... .... .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~-----~~~~~~---------------------------~~~~---~- 44 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTI-----GVDFKS---------------------------KTIE---I- 44 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCce-----eeeeEE---------------------------EEEE---E-
Confidence 369999999999999999999887664321110 000000 0000 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
. .....+.+||+||+..+.. .....+ ..+|++++++|+.+.. .......++..+.....
T Consensus 45 -~-----------~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~ 103 (159)
T cd00154 45 -D-----------GKTVKLQIWDTAGQERFRS------ITPSYY--RGAHGAILVYDITNRE-SFENLDKWLKELKEYAP 103 (159)
T ss_pred -C-----------CEEEEEEEEecCChHHHHH------HHHHHh--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC
Confidence 0 1245788999999755411 111122 3368999999987621 11112112222222222
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
.+.|+++|+||+|+..+... ..+....+.. . ...+++++||++|.|+++++..|.
T Consensus 104 ~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 104 ENIPIILVGNKIDLEDQRQV--STEEAQQFAK---------------------E--NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred CCCcEEEEEEcccccccccc--cHHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHHHHHHh
Confidence 46999999999999732211 1111111110 1 247899999999999999999885
No 164
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=1.4e-17 Score=145.69 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=82.8
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+.+.++.||||||+.+|.. .....+ ..+|.+++|+|+..+...+. ...+..+...++|+++|+||+|
T Consensus 61 ~~~~~i~liDTPG~~~f~~------~~~~~l--~~aD~~IlVvd~~~g~~~~~-----~~~~~~~~~~~~P~iivvNK~D 127 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIA------EVERSL--SVLDGAILVISAVEGVQAQT-----RILWRLLRKLNIPTIIFVNKID 127 (237)
T ss_pred ECCEEEEEEeCCCccchHH------HHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcc
Confidence 3467899999999987622 122222 23589999999998875432 1112344456899999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcC------cc----------chhhHHHHHH----HhHHHHh-----------------
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSD------HS----------YTSTLTNSLS----LALDEFY----------------- 285 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~------~~----------~~~~l~~~~~----~~~~~~~----------------- 285 (324)
+...+. .+. +..+.+.+... |. ....+.+.+. .+++.|+
T Consensus 128 ~~~a~~-~~~---~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~ 203 (237)
T cd04168 128 RAGADL-EKV---YQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSAR 203 (237)
T ss_pred ccCCCH-HHH---HHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 986431 122 22333333221 10 0122222221 2333443
Q ss_pred ----ccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 286 ----KNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 286 ----~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
...|+++.||.++.|+..|++.|.+++|.
T Consensus 204 ~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 204 IAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred HHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 23578888999999999999999998763
No 165
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.77 E-value=1.6e-18 Score=142.51 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=88.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|++|||||||+++++...+.....+ ....+ ...+ ...
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-------~~~~~--~~~i-----------------------~~~------ 43 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-------EGGRF--KKEV-----------------------LVD------ 43 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-------Cccce--EEEE-----------------------EEC------
Confidence 699999999999999999988766532111 00000 0000 000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCC--CCCCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP--RSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~--~~~~~~~~~~~~~~~~~~~~ 228 (324)
+....+.||||+|+.+.. +. ..+|++++|.|.. .++.....|...+ ....
T Consensus 44 ------------~~~~~l~i~D~~g~~~~~-----------~~--~~~~~~ilv~d~~~~~sf~~~~~~~~~i---~~~~ 95 (158)
T cd04103 44 ------------GQSHLLLIRDEGGAPDAQ-----------FA--SWVDAVIFVFSLENEASFQTVYNLYHQL---SSYR 95 (158)
T ss_pred ------------CEEEEEEEEECCCCCchh-----------HH--hcCCEEEEEEECCCHHHHHHHHHHHHHH---HHhc
Confidence 123568899999986521 11 1246666666654 3444433443322 2222
Q ss_pred -hcCCCeEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 229 -KTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 229 -~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
..+.|+++|+||+|+... ..+. .+.... +++ -....++++|||++|.||+++|
T Consensus 96 ~~~~~piilvgnK~Dl~~~~~~~v~--~~~~~~--------------~~~--------~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 96 NISEIPLILVGTQDAISESNPRVID--DARARQ--------------LCA--------DMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred CCCCCCEEEEeeHHHhhhcCCcccC--HHHHHH--------------HHH--------HhCCCcEEEEecCCCCCHHHHH
Confidence 246899999999998531 1110 001111 111 1124689999999999999999
Q ss_pred HHHHHH
Q 020549 306 KAVEES 311 (324)
Q Consensus 306 ~~i~~~ 311 (324)
..+.+.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 998754
No 166
>PLN03108 Rab family protein; Provisional
Probab=99.77 E-value=3.6e-18 Score=147.08 Aligned_cols=163 Identities=19% Similarity=0.193 Sum_probs=96.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+++|++..+...+.+++ .+. +.. . .+...
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti-----~~~---~~~----~------------------~i~~~--- 51 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----GVE---FGA----R------------------MITID--- 51 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-----cce---EEE----E------------------EEEEC---
Confidence 35789999999999999999999876654322111 000 000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.+|||||++++.. .....+ ..+|.+|+|+|..... .....|.. .+.
T Consensus 52 ---------------~~~i~l~l~Dt~G~~~~~~------~~~~~~--~~ad~~vlv~D~~~~~s~~~l~~~~~---~~~ 105 (210)
T PLN03108 52 ---------------NKPIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLASWLE---DAR 105 (210)
T ss_pred ---------------CEEEEEEEEeCCCcHHHHH------HHHHHh--ccCCEEEEEEECCcHHHHHHHHHHHH---HHH
Confidence 1134678999999876521 111122 2357888888876432 22223322 122
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.......|+++|+||+|+....... .+....+.+ . .+.+++++||++|.||+++|
T Consensus 106 ~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 106 QHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAK---------------------E--HGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred HhcCCCCcEEEEEECccCccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHH
Confidence 2233578999999999997542110 011111111 1 14689999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
..+++.+..
T Consensus 161 ~~l~~~~~~ 169 (210)
T PLN03108 161 IKTAAKIYK 169 (210)
T ss_pred HHHHHHHHH
Confidence 999887754
No 167
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.77 E-value=2.8e-18 Score=142.85 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=91.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||+++|.+..+.... ++. + +.. ..+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~--------~t~-----g--~~~-------------------~~i~---- 54 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHIT--------PTQ-----G--FNI-------------------KTVQ---- 54 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccC--------CCC-----C--cce-------------------EEEE----
Confidence 4688999999999999999999986442100 000 0 000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.+|||||+.++. ......+ ..+|.+++|+|+................+...
T Consensus 55 ---------------~~~~~~~~~D~~G~~~~~------~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~ 111 (173)
T cd04155 55 ---------------SDGFKLNVWDIGGQRAIR------PYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEE 111 (173)
T ss_pred ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh
Confidence 124578899999976541 1111222 34689999999875321111000111111222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
...++|+++++||+|+.......++.+.+. . ... ....+++++||++|+|++++|+
T Consensus 112 ~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~---------------------~--~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 112 KLAGVPVLVFANKQDLATAAPAEEIAEALN---------------------L--HDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred hhcCCCEEEEEECCCCccCCCHHHHHHHcC---------------------C--cccCCCeEEEEEeECCCCCCHHHHHH
Confidence 335799999999999976432222221111 0 000 1123578999999999999999
Q ss_pred HHHH
Q 020549 307 AVEE 310 (324)
Q Consensus 307 ~i~~ 310 (324)
+|++
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9875
No 168
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=7.5e-18 Score=165.39 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 243 (324)
+..+.||||||+++|.. .+...+ ..+|++++|||+.+++.+++.. .+..+...++|. |+|+||+|+
T Consensus 50 g~~i~~IDtPGhe~fi~------~m~~g~--~~~D~~lLVVda~eg~~~qT~e-----hl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 50 GRVLGFIDVPGHEKFLS------NMLAGV--GGIDHALLVVACDDGVMAQTRE-----HLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred CcEEEEEECCCHHHHHH------HHHHHh--hcCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCcc
Confidence 34578999999866521 222222 3469999999999988776632 223445567774 799999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
++.+......+++..+... ..+...++|++||++|.|+++|++.|......
T Consensus 117 v~~~~~~~v~~ei~~~l~~--------------------~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 117 VDEARIAEVRRQVKAVLRE--------------------YGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 8765443333333322111 01234789999999999999999999876543
No 169
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=5.1e-18 Score=160.74 Aligned_cols=160 Identities=22% Similarity=0.298 Sum_probs=100.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+.+++|+++|+||||||||+|+|++..+.. ++.+++++ ++.. .+.+.
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------vs~~pgtT----rd~~--------------~~~i~-- 247 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------VSDIKGTT----RDVV--------------EGDFE-- 247 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcE----EEEE--------------EEEEE--
Confidence 4567899999999999999999999865432 34444443 1110 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhH-HHHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.++. .... ..+.+... -..+|++++|+|+.........| +
T Consensus 248 -----------------~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~---l-- 303 (442)
T TIGR00450 248 -----------------LNGILIKLLDTAGIREHA--DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFL---I-- 303 (442)
T ss_pred -----------------ECCEEEEEeeCCCcccch--hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHH---H--
Confidence 124578899999987642 1111 11111111 13579999999998765433333 2
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
..+...++|+|+|+||+|+...+ . +.+. + ..+.+++++||++ .||++
T Consensus 304 -~~~~~~~~piIlV~NK~Dl~~~~-~----~~~~-------------------------~-~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 304 -IDLNKSKKPFILVLNKIDLKINS-L----EFFV-------------------------S-SKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred -HHHhhCCCCEEEEEECccCCCcc-h----hhhh-------------------------h-hcCCceEEEEEec-CCHHH
Confidence 23334578999999999997541 1 1110 1 1135789999998 69999
Q ss_pred HHHHHHHHHHH
Q 020549 304 YFKAVEESAQE 314 (324)
Q Consensus 304 l~~~i~~~~~~ 314 (324)
+++.|.+.+.+
T Consensus 351 ~~~~L~~~i~~ 361 (442)
T TIGR00450 351 LVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 170
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.76 E-value=2.6e-18 Score=149.13 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHh-hcCCCeEEEeecc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY-KTRLPLVLAFNKT 241 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~ 241 (324)
...+.||||||+... +...+....+|++++|+|..+.. .....|...+ .... ..++|+|+|+||+
T Consensus 49 ~~~l~i~Dt~G~~~~---------~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l---~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 49 ESTLVVIDHWEQEMW---------TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQL---RRNRQLEDRPIILVGNKS 116 (221)
T ss_pred EEEEEEEeCCCcchH---------HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHH---HHhcCCCCCCEEEEEECh
Confidence 457889999998621 11111111568888888886532 2222232211 2211 2479999999999
Q ss_pred ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
|+....... .+....+. .. ...+++++||++|.||+++|+.|.+.+.
T Consensus 117 Dl~~~~~v~--~~~~~~~a----------------------~~-~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 117 DLARSREVS--VQEGRACA----------------------VV-FDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred hccccceec--HHHHHHHH----------------------HH-cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 997643211 00111111 11 1467999999999999999999998875
No 171
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=1.3e-17 Score=141.77 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
....+.||||||+.++.. .....+ ..+|++++|+|+..+......+ .+ ..+...++|+++|+||+|+
T Consensus 63 ~~~~~~l~DtpG~~~~~~------~~~~~~--~~~d~~ilV~d~~~~~~~~~~~--~~---~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGG------EVERVL--SMVDGVLLLVDASEGPMPQTRF--VL---KKALELGLKPIVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHH------HHHHHH--HhcCEEEEEEECCCCccHHHHH--HH---HHHHHcCCCEEEEEECCCC
Confidence 356889999999887621 122222 2358999999998765433321 12 3334568999999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
..... ....+++..+...+ +.. ......+++++||++|.|+.+
T Consensus 130 ~~~~~-~~~~~~~~~~~~~~--------------~~~--~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 130 PDARP-EEVVDEVFDLFIEL--------------GAT--EEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCCCH-HHHHHHHHHHHHHh--------------CCc--cccCccCEEEeehhccccccc
Confidence 75321 11222222111110 000 001146899999999976643
No 172
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=1.3e-17 Score=145.72 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=105.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.-|+++|.||||||||+|+|+..+.. +..|++|| |.|.-|.+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpk-------------Va~YaFTT------------------L~P~iG~v~y----- 240 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPK-------------VAHYAFTT------------------LRPHIGTVNY----- 240 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCc-------------ccccceee------------------eccccceeec-----
Confidence 34899999999999999999988654 66777776 2233332221
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh-hhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
....++.+-|.||+.+-.. ..-.+..+++.+.+ ++.++||||.+... .+.+.+..+...++.
T Consensus 241 -------------ddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER--~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ 305 (366)
T KOG1489|consen 241 -------------DDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER--CKGLLFVVDLSGKQLRNPWQQLQLLIEELEL 305 (366)
T ss_pred -------------cccceeEeccCccccccccccCcccHHHHHHHHh--hceEEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 1233588999999887532 22355566666543 57999999998762 222222222222233
Q ss_pred Hhh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
+.. ...|.++|+||+|+.+.+. .. +.+|.+ ......++++||++++|+++|
T Consensus 306 yek~L~~rp~liVaNKiD~~eae~--~~---l~~L~~----------------------~lq~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 306 YEKGLADRPALIVANKIDLPEAEK--NL---LSSLAK----------------------RLQNPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred HhhhhccCceEEEEeccCchhHHH--HH---HHHHHH----------------------HcCCCcEEEeeeccccchHHH
Confidence 322 5689999999999974331 11 222222 223345999999999999999
Q ss_pred HHHHHH
Q 020549 305 FKAVEE 310 (324)
Q Consensus 305 ~~~i~~ 310 (324)
++.|-+
T Consensus 359 l~~lr~ 364 (366)
T KOG1489|consen 359 LNGLRE 364 (366)
T ss_pred HHHHhh
Confidence 988754
No 173
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=4e-18 Score=139.62 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=90.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+++|++|||||||+++|++..+.....++.. ..+... ....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~--------~~~~~~-----------------------~~~~------ 43 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE--------DSYRKT-----------------------IVVD------ 43 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh--------HeEEEE-----------------------EEEC------
Confidence 589999999999999999998765433221110 000000 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~ 228 (324)
.....+.+||+||+.++.. .....+ ..+|++++|+|..... .....|...+ .....
T Consensus 44 ------------~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~ 101 (160)
T cd00876 44 ------------GETYTLDILDTAGQEEFSA------MRDLYI--RQGDGFILVYSITDRESFEEIKGYREQI--LRVKD 101 (160)
T ss_pred ------------CEEEEEEEEECCChHHHHH------HHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHH--HHhcC
Confidence 1135688999999766421 111122 2358888888875432 1122221111 11112
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
....|+++|+||+|+...... ..+....+.. .+ ..+++++||++|.|++++++.|
T Consensus 102 ~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~~--~~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 102 DEDIPIVLVGNKCDLENERQV--SKEEGKALAK---------------------EW--GCPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred CCCCcEEEEEECCccccccee--cHHHHHHHHH---------------------Hc--CCcEEEeccCCCCCHHHHHHHH
Confidence 247999999999999863211 0111111111 11 2689999999999999999999
Q ss_pred HHH
Q 020549 309 EES 311 (324)
Q Consensus 309 ~~~ 311 (324)
.+.
T Consensus 157 ~~~ 159 (160)
T cd00876 157 VRE 159 (160)
T ss_pred Hhh
Confidence 875
No 174
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=4.4e-17 Score=134.99 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=113.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....+-|+++|++|||||||||+|+++..-. -++..|+.|.. .
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------rtSktPGrTq~----i---------------------- 63 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------RTSKTPGRTQL----I---------------------- 63 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCccee-----------ecCCCCCccce----e----------------------
Confidence 3355679999999999999999999975211 14444544410 0
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcch----hhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI----FTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
++| .-...+.|+|.||..-. .........+.+++.. ..-..++++||+++.....+.
T Consensus 64 Nff--------------~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~---- 125 (200)
T COG0218 64 NFF--------------EVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR---- 125 (200)
T ss_pred EEE--------------EecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH----
Confidence 001 11234889999995432 1123345566667654 235788999999999987763
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccC-ceeeeccccCC
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSVGVSSVSGA 299 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~iv~vSA~~g~ 299 (324)
+.+..+...++|+++|+||+|.++..........+. +.+.. ..... .++.+|+.++.
T Consensus 126 -em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~---~~l~~------------------~~~~~~~~~~~ss~~k~ 183 (200)
T COG0218 126 -EMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVA---EELKK------------------PPPDDQWVVLFSSLKKK 183 (200)
T ss_pred -HHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHH---HHhcC------------------CCCccceEEEEeccccc
Confidence 233667788999999999999999765443333332 11100 01111 28899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQE 314 (324)
Q Consensus 300 gv~~l~~~i~~~~~~ 314 (324)
|+++|...|.+.+..
T Consensus 184 Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 184 GIDELKAKILEWLKE 198 (200)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999887653
No 175
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=3.6e-17 Score=159.83 Aligned_cols=127 Identities=25% Similarity=0.343 Sum_probs=75.3
Q ss_pred CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCCh
Q 020549 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
.+.||||||+++|... ..+. ...+|++++|+|+.+++.++++. .+..+...++|+++|+||+|+...
T Consensus 72 ~i~~iDTPG~e~f~~~------~~~~--~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~~vpiIvviNK~D~~~~ 138 (586)
T PRK04004 72 GLLFIDTPGHEAFTNL------RKRG--GALADIAILVVDINEGFQPQTIE-----AINILKRRKTPFVVAANKIDRIPG 138 (586)
T ss_pred CEEEEECCChHHHHHH------HHHh--HhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCchh
Confidence 4789999998876221 1111 13479999999999887766532 223445578999999999998632
Q ss_pred HhH--------------HHHHHhHHHHHHHHhcCccchhhHHHHHHHh------HHHHhccCceeeeccccCCChHHHHH
Q 020549 247 EFA--------------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLA------LDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 247 ~~~--------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
... ......+......+ ...|. ..+.. +.++....+++++||++|+|+++|++
T Consensus 139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev------~~~L~-~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~ 211 (586)
T PRK04004 139 WKSTEDAPFLESIEKQSQRVQQELEEKLYEL------IGQLS-ELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLM 211 (586)
T ss_pred hhhhcCchHHHHHhhhhHHHHHHHHHHHHHH------HHHHH-hcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHH
Confidence 110 00011111110000 00010 00100 12344568999999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.+.....
T Consensus 212 ~i~~~~~ 218 (586)
T PRK04004 212 VLAGLAQ 218 (586)
T ss_pred HHHHHHH
Confidence 9876543
No 176
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.75 E-value=1.5e-17 Score=142.96 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=64.2
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeeccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTD 242 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D 242 (324)
.+.++.||||||+.+|.. .+...+ ..+|++++|+|+..++...... ....+...+. ++|+|+||+|
T Consensus 75 ~~~~~~liDTpG~~~~~~------~~~~~~--~~ad~~llVvD~~~~~~~~~~~-----~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 75 PKRKFIIADTPGHEQYTR------NMVTGA--STADLAILLVDARKGVLEQTRR-----HSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred CCceEEEEECCcHHHHHH------HHHHhh--hhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCCcEEEEEEchh
Confidence 366899999999866521 111211 3479999999998876554421 1122333454 4677999999
Q ss_pred cCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
+.... ........++.+.+.+ . +...+++++||++|.|+++.
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~~-------------------~-~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKL-------------------G-IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-------------------C-CCCceEEEEeCCCCCCCccC
Confidence 97532 1122222222221111 0 12356999999999999864
No 177
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=3.1e-18 Score=146.02 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
...+.||||||++++.. ....++ ..+|++|+|+|..... .....|...+ ... ..++|+++|+||+|
T Consensus 43 ~~~l~iwDt~G~e~~~~------l~~~~~--~~ad~~ilV~D~t~~~S~~~i~~w~~~i---~~~-~~~~piilvgNK~D 110 (200)
T smart00176 43 PIRFNVWDTAGQEKFGG------LRDGYY--IQGQCAIIMFDVTARVTYKNVPNWHRDL---VRV-CENIPIVLCGNKVD 110 (200)
T ss_pred EEEEEEEECCCchhhhh------hhHHHh--cCCCEEEEEEECCChHHHHHHHHHHHHH---HHh-CCCCCEEEEEECcc
Confidence 46788999999987621 111122 2357888888876543 2233443333 222 24799999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
+.......+. . .+. . ....++++|||++|.||+++|..|.+.+..
T Consensus 111 l~~~~v~~~~---~-~~~----------------------~-~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 111 VKDRKVKAKS---I-TFH----------------------R-KKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred cccccCCHHH---H-HHH----------------------H-HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8542211000 0 010 1 124789999999999999999999988754
No 178
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=5.8e-17 Score=138.19 Aligned_cols=177 Identities=14% Similarity=0.059 Sum_probs=99.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
+.+|+++|++|||||||+|+|++........+.+. . .. ++ ... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-----~--~~-~t----~~~----------------~~~~~---- 48 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-----V--VE-TT----MKR----------------TPYPH---- 48 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-----c--cc-cc----cCc----------------eeeec----
Confidence 36799999999999999999998655432211110 0 00 00 000 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.+|||||+.+... ... ...+.+.-..+|+++++.+. .+...+. ..+..+.
T Consensus 49 --------------~~~~~l~l~DtpG~~~~~~--~~~-~~l~~~~~~~~d~~l~v~~~--~~~~~d~-----~~~~~l~ 104 (197)
T cd04104 49 --------------PKFPNVTLWDLPGIGSTAF--PPD-DYLEEMKFSEYDFFIIISST--RFSSNDV-----KLAKAIQ 104 (197)
T ss_pred --------------CCCCCceEEeCCCCCcccC--CHH-HHHHHhCccCcCEEEEEeCC--CCCHHHH-----HHHHHHH
Confidence 1134788999999876421 111 11222222345888887654 3333331 1123344
Q ss_pred hcCCCeEEEeeccccCChHhH---------HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccc--
Q 020549 229 KTRLPLVLAFNKTDVAQHEFA---------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSV-- 296 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~-- 296 (324)
..+.|+++|+||+|+..+... .+.++.+. +.....+.. .....+++.+|+.
T Consensus 105 ~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~-----------------~~~~~~~~~~~~~~p~v~~vS~~~~ 167 (197)
T cd04104 105 CMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR-----------------DNCLENLQEAGVSEPPVFLVSNFDP 167 (197)
T ss_pred HhCCCEEEEEecccchhhhhhccccccccHHHHHHHHH-----------------HHHHHHHHHcCCCCCCEEEEeCCCh
Confidence 457899999999999654221 11222222 111111111 1234589999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHh
Q 020549 297 SGAGIEAYFKAVEESAQEFMET 318 (324)
Q Consensus 297 ~g~gv~~l~~~i~~~~~~~~~~ 318 (324)
.+.|+..|.+.+...+++..+.
T Consensus 168 ~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 168 SDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred hhcChHHHHHHHHHHhhHHHHH
Confidence 6899999999999999875543
No 179
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.75 E-value=1.1e-17 Score=167.44 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=103.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|+||||||||+|+|++.... +.+++++|. +.. .+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------vgn~pGvTv-e~k-----------------~g~~~----- 46 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-------------VGNWAGVTV-ERK-----------------EGQFS----- 46 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCceE-eeE-----------------EEEEE-----
Confidence 357999999999999999999886442 233333331 100 01111
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh---hhhHHHH-HHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~-~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+.++.+|||||+.++... ......+ ...+....+|++++|+|+++...... + .
T Consensus 47 --------------~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~-l------~ 105 (772)
T PRK09554 47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY-L------T 105 (772)
T ss_pred --------------cCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHH-H------H
Confidence 23568899999999876311 1122222 23334456799999999976433222 1 1
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+...++|+++|+||+|+.+..... ...+.+.+. -+.+++++||++|+|++++
T Consensus 106 ~ql~e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~-----------------------LG~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 106 LQLLELGIPCIVALNMLDIAEKQNIR---IDIDALSAR-----------------------LGCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred HHHHHcCCCEEEEEEchhhhhccCcH---HHHHHHHHH-----------------------hCCCEEEEEeecCCCHHHH
Confidence 23445789999999999987543221 122222211 1479999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
++.+.+...
T Consensus 160 ~~~I~~~~~ 168 (772)
T PRK09554 160 KLAIDRHQA 168 (772)
T ss_pred HHHHHHhhh
Confidence 999987653
No 180
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3.3e-17 Score=144.82 Aligned_cols=170 Identities=20% Similarity=0.269 Sum_probs=116.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
-|+++|.||||||||+++++..+.. +.+||+|| |-||.|.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPK-------------IadYpFTT------------------L~PnLGvV~~------ 203 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPK-------------IADYPFTT------------------LVPNLGVVRV------ 203 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCc-------------ccCCcccc------------------ccCcccEEEe------
Confidence 3899999999999999999987654 67889998 5567776653
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~ 227 (324)
.....+++-|.||+.+-.... -++..+++.+.+ +-++++|||.+..- .+...+..+...+..+
T Consensus 204 ------------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER--t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y 269 (369)
T COG0536 204 ------------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER--TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY 269 (369)
T ss_pred ------------cCCCcEEEecCcccccccccCCCccHHHHHHHHh--hheeEEEEecCcccCCCHHHHHHHHHHHHHHh
Confidence 235679999999998864333 366677777655 35899999987543 2333232223222332
Q ss_pred --hhcCCCeEEEeeccccCChH-hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 228 --YKTRLPLVLAFNKTDVAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 228 --~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.-.++|.++|+||+|++..+ ..+.+.+.+. ....+...+++||.+++|+++|
T Consensus 270 ~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~-------------------------~~~~~~~~~~ISa~t~~g~~~L 324 (369)
T COG0536 270 SPKLAEKPRIVVLNKIDLPLDEEELEELKKALA-------------------------EALGWEVFYLISALTREGLDEL 324 (369)
T ss_pred hHHhccCceEEEEeccCCCcCHHHHHHHHHHHH-------------------------HhcCCCcceeeehhcccCHHHH
Confidence 23679999999999966543 2222222221 1122333333999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFM 316 (324)
Q Consensus 305 ~~~i~~~~~~~~ 316 (324)
...+.+.+.+..
T Consensus 325 ~~~~~~~l~~~~ 336 (369)
T COG0536 325 LRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHhh
Confidence 999999887664
No 181
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.75 E-value=1.7e-17 Score=131.53 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=86.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..........+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i----------------------------------------------- 34 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAI----------------------------------------------- 34 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCcccee-----------------------------------------------
Confidence 469999999999999999998865432211111
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
.+.=.++||||- |.........+.. .+..+|+++++.|+......-.- ....-
T Consensus 35 ---------------~~~~~~IDTPGE--yiE~~~~y~aLi~--ta~dad~V~ll~dat~~~~~~pP--------~fa~~ 87 (143)
T PF10662_consen 35 ---------------EYYDNTIDTPGE--YIENPRFYHALIV--TAQDADVVLLLQDATEPRSVFPP--------GFASM 87 (143)
T ss_pred ---------------EecccEEECChh--heeCHHHHHHHHH--HHhhCCEEEEEecCCCCCccCCc--------hhhcc
Confidence 011136999992 1111111111111 12457999999999875432210 11222
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
.++|+|-|+||+|+...+...+..+... ......++|++||.+|+||++|.+.|.
T Consensus 88 f~~pvIGVITK~Dl~~~~~~i~~a~~~L-------------------------~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 88 FNKPVIGVITKIDLPSDDANIERAKKWL-------------------------KNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCCEEEEEECccCccchhhHHHHHHHH-------------------------HHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 4689999999999994332111111111 122345789999999999999999875
No 182
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=6.4e-18 Score=169.64 Aligned_cols=161 Identities=22% Similarity=0.277 Sum_probs=101.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+|+|++|||||||+|+|++.... + +...++.+ ++++. +...
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~------i------v~~~pGvT----~d~~~--------------~~~~----- 319 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREA------V------VEDTPGVT----RDRVS--------------YDAE----- 319 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCce------e------ecCCCCee----EEEEE--------------EEEE-----
Confidence 467999999999999999999986432 1 22223322 11100 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
..+..+.||||||+.... ......+..... -..+|+++||+|+..++...+.. .+..
T Consensus 320 --------------~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~-----i~~~ 378 (712)
T PRK09518 320 --------------WAGTDFKLVDTGGWEADV--EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDER-----IVRM 378 (712)
T ss_pred --------------ECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHH
Confidence 225678999999976421 112222222211 14579999999999877665421 1234
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
+...++|+|+|+||+|+..... ....+. . .....++++||++|.||++|++
T Consensus 379 Lr~~~~pvIlV~NK~D~~~~~~---~~~~~~-------------------------~-lg~~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 379 LRRAGKPVVLAVNKIDDQASEY---DAAEFW-------------------------K-LGLGEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred HHhcCCCEEEEEECcccccchh---hHHHHH-------------------------H-cCCCCeEEEECCCCCCchHHHH
Confidence 4567899999999999865321 111110 0 1223568999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
.|.+.++.
T Consensus 430 ~i~~~l~~ 437 (712)
T PRK09518 430 EALDSLKV 437 (712)
T ss_pred HHHHhccc
Confidence 99998865
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.3e-17 Score=159.17 Aligned_cols=158 Identities=25% Similarity=0.274 Sum_probs=98.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+|+|.+|||||||+|+|++..... +...++.+ ++.. .+.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------v~~~~~~t----~d~~--------------~~~~~------ 45 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------VADTPGVT----RDRI--------------YGEAE------ 45 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------eCCCCCCc----ccce--------------EEEEE------
Confidence 479999999999999999999865321 22222222 1110 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||+... .......+..... -..+|+++||+|+..+....+.+. ...+
T Consensus 46 -------------~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~-----~~~l 105 (435)
T PRK00093 46 -------------WLGREFILIDTGGIEPD--DDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEI-----AKIL 105 (435)
T ss_pred -------------ECCcEEEEEECCCCCCc--chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH-----HHHH
Confidence 22568999999998762 1111112222111 134799999999988766554321 2334
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+.+... ...++. . .....++++||++|.|++++++.
T Consensus 106 ~~~~~piilv~NK~D~~~~~~---~~~~~~-------------------------~-lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 106 RKSNKPVILVVNKVDGPDEEA---DAYEFY-------------------------S-LGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred HHcCCcEEEEEECccCccchh---hHHHHH-------------------------h-cCCCCCEEEEeeCCCCHHHHHHH
Confidence 456899999999999764221 111111 0 12335899999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|....
T Consensus 157 I~~~~ 161 (435)
T PRK00093 157 ILEEL 161 (435)
T ss_pred HHhhC
Confidence 98743
No 184
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.75 E-value=4.9e-17 Score=147.58 Aligned_cols=201 Identities=20% Similarity=0.214 Sum_probs=121.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC-----Ccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-----GGI 141 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~ 141 (324)
.++..|+|+|+||||||||+++|.......+..+.++..||... ..++.-+ .++++ |+.+...+. .+-
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~-~~~gall--gd~~r----~~~~~~~~~~~~r~~~~ 126 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST-RTGGSIL--GDKTR----MERLSRHPNAFIRPSPS 126 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc-ccchhhh--chHhH----HHhhcCCCCeEEEecCC
Confidence 45788999999999999999999988777788899999888542 2111111 12222 222222111 122
Q ss_pred cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
+|....++....+.+..+. ..+++++|+||+|..+... .+ ...+|+++++++...+..-+....
T Consensus 127 ~~~l~~~a~~~~~~~~~~~--~~g~d~viieT~Gv~qs~~------~i-----~~~aD~vlvv~~p~~gd~iq~~k~--- 190 (332)
T PRK09435 127 SGTLGGVARKTRETMLLCE--AAGYDVILVETVGVGQSET------AV-----AGMVDFFLLLQLPGAGDELQGIKK--- 190 (332)
T ss_pred cccccchHHHHHHHHHHHh--ccCCCEEEEECCCCccchh------HH-----HHhCCEEEEEecCCchHHHHHHHh---
Confidence 3333334455555555555 3478999999999765311 11 124699999987433322111111
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhcc-CceeeeccccCCC
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAG 300 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~iv~vSA~~g~g 300 (324)
....+..++|+||+|+.+.........++......+.. ....+ .|++++||++|.|
T Consensus 191 ------gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~-----------------~~~~w~~pVi~vSA~~g~G 247 (332)
T PRK09435 191 ------GIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRP-----------------KDPGWQPPVLTCSALEGEG 247 (332)
T ss_pred ------hhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccc-----------------cccCCCCCEEEEECCCCCC
Confidence 11234459999999998765333333333211110000 00012 5899999999999
Q ss_pred hHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQ 313 (324)
Q Consensus 301 v~~l~~~i~~~~~ 313 (324)
+++|++.|.++++
T Consensus 248 IdeL~~~I~~~~~ 260 (332)
T PRK09435 248 IDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 185
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=5e-18 Score=140.90 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH-hhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl 243 (324)
...+.+|||||+.++.. ....++ ..+|+++||+|++.... .......+..+... ...++|+++|+||+|+
T Consensus 42 ~~~~~i~D~~G~~~~~~------~~~~~~--~~a~~ii~V~D~s~~~s-~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 112 (167)
T cd04161 42 KYEVCIFDLGGGANFRG------IWVNYY--AEAHGLVFVVDSSDDDR-VQEVKEILRELLQHPRVSGKPILVLANKQDK 112 (167)
T ss_pred CEEEEEEECCCcHHHHH------HHHHHH--cCCCEEEEEEECCchhH-HHHHHHHHHHHHcCccccCCcEEEEEeCCCC
Confidence 56789999999866411 112222 34689999999876421 11111112111111 1247899999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC------CChHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG------AGIEAYFKAVEE 310 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g------~gv~~l~~~i~~ 310 (324)
.......+..+.+. + ..+.+ +......++++||++| .|+++.|++|.+
T Consensus 113 ~~~~~~~~i~~~~~-l-----------~~~~~-------~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 113 KNALLGADVIEYLS-L-----------EKLVN-------ENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCCCCHHHHHHhcC-c-----------ccccC-------CCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 76542222222211 0 00000 0111357888999998 899999999864
No 186
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=8.9e-18 Score=160.89 Aligned_cols=162 Identities=23% Similarity=0.327 Sum_probs=111.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.||+|||||+|+|+|.... +.++|+.| ++ ...|...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-------------VgNwpGvT-VE-----------------kkeg~~~------ 46 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-------------VGNWPGVT-VE-----------------KKEGKLK------ 46 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-------------ecCCCCee-EE-----------------EEEEEEE------
Confidence 45999999999999999999998654 44455443 10 0012221
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
..+.++.++|.||.......+.......+.+.....|++|.|+|+..--..... .-.+..
T Consensus 47 -------------~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE 106 (653)
T COG0370 47 -------------YKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL-------TLQLLE 106 (653)
T ss_pred -------------ecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH-------HHHHHH
Confidence 235679999999998875554555555556666778999999999653322221 123556
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
.++|+|+++|++|.....-. .-+.+.|.+. -++|++++||++|.|++++...+.
T Consensus 107 ~g~p~ilaLNm~D~A~~~Gi---~ID~~~L~~~-----------------------LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 107 LGIPMILALNMIDEAKKRGI---RIDIEKLSKL-----------------------LGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred cCCCeEEEeccHhhHHhcCC---cccHHHHHHH-----------------------hCCCEEEEEeecCCCHHHHHHHHH
Confidence 89999999999998765322 1222322222 268999999999999999999998
Q ss_pred HHHHH
Q 020549 310 ESAQE 314 (324)
Q Consensus 310 ~~~~~ 314 (324)
+..+.
T Consensus 161 ~~~~~ 165 (653)
T COG0370 161 ELAES 165 (653)
T ss_pred Hhccc
Confidence 75543
No 187
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=5.9e-18 Score=143.92 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchh-HHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMT-FMSNMLYACSILYKTRLPLVLAFNKT 241 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~ 241 (324)
...+.||||||+++.. +. .++ ..+|++++|.|..+ ++.... .|...+ ... ..+.|+|+|+||+
T Consensus 65 ~v~l~iwDTaG~~~~~-~~-------~~~--~~ad~iilv~d~t~~~Sf~~~~~~w~~~i---~~~-~~~~piilvgNK~ 130 (195)
T cd01873 65 SVSLRLWDTFGDHDKD-RR-------FAY--GRSDVVLLCFSIASPNSLRNVKTMWYPEI---RHF-CPRVPVILVGCKL 130 (195)
T ss_pred EEEEEEEeCCCChhhh-hc-------ccC--CCCCEEEEEEECCChhHHHHHHHHHHHHH---HHh-CCCCCEEEEEEch
Confidence 5688999999986521 00 011 34677777777644 343332 354333 222 2478999999999
Q ss_pred ccCChHhHHHHHHhHHHHHHHHhc----CccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 242 DVAQHEFALEWMQDFEVFQAAISS----DHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
|+....... .......+...... ....+..++++ . ++++++|||++|.||+++|+.+++.
T Consensus 131 DL~~~~~~~-~~~~~~~~~~~~~~~~~V~~~e~~~~a~~--------~-~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 131 DLRYADLDE-VNRARRPLARPIKNADILPPETGRAVAKE--------L-GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred hccccccch-hhhcccccccccccCCccCHHHHHHHHHH--------h-CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 986421000 00000000000000 00011122221 1 3589999999999999999998764
No 188
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=130.14 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=111.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++++++|..-+|||||+-+++...|.-....+ ++..+..-
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsT------------------------lQASF~~k------------ 53 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLST------------------------LQASFQNK------------ 53 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHH------------------------HHHHHhhc------------
Confidence 345689999999999999999999998886432110 00000000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.+.......++.||||+||++|. +++.+ +++.+...++||.|..+++++....|... ++
T Consensus 54 ------------k~n~ed~ra~L~IWDTAGQErfH---ALGPI---YYRgSnGalLVyDITDrdSFqKVKnWV~E---lr 112 (218)
T KOG0088|consen 54 ------------KVNVEDCRADLHIWDTAGQERFH---ALGPI---YYRGSNGALLVYDITDRDSFQKVKNWVLE---LR 112 (218)
T ss_pred ------------ccccccceeeeeeeeccchHhhh---ccCce---EEeCCCceEEEEeccchHHHHHHHHHHHH---HH
Confidence 01111336789999999999972 22221 11233345788888888888777777444 46
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.+....+.++||+||+||.....+. .++-. ..++. .++.++++||+.+.||.+||
T Consensus 113 ~mlGnei~l~IVGNKiDLEeeR~Vt--~qeAe--------------~YAes---------vGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 113 TMLGNEIELLIVGNKIDLEEERQVT--RQEAE--------------AYAES---------VGALYMETSAKDNVGISELF 167 (218)
T ss_pred HHhCCeeEEEEecCcccHHHhhhhh--HHHHH--------------HHHHh---------hchhheecccccccCHHHHH
Confidence 7778889999999999997654321 11111 11111 24678889999999999999
Q ss_pred HHHHHHHHHH
Q 020549 306 KAVEESAQEF 315 (324)
Q Consensus 306 ~~i~~~~~~~ 315 (324)
+.|.....+.
T Consensus 168 e~Lt~~MiE~ 177 (218)
T KOG0088|consen 168 ESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHH
Confidence 9998876553
No 189
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.7e-17 Score=153.81 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=114.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+++.|.|+|+...|||||+.+|.+.....+....|.+. + |.+..+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQh------------I--------------------GAF~V~- 196 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQH------------I--------------------GAFTVT- 196 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccce------------e--------------------ceEEEe-
Confidence 5678899999999999999999998876553322211110 0 011111
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
+ ..+..+.|+||||+.-|..-+ .+. ...|++|+||.+.+|+.+++ .+.+
T Consensus 197 ------~----------p~G~~iTFLDTPGHaAF~aMR---------aRGA~vtDIvVLVVAadDGVmpQT-----~EaI 246 (683)
T KOG1145|consen 197 ------L----------PSGKSITFLDTPGHAAFSAMR---------ARGANVTDIVVLVVAADDGVMPQT-----LEAI 246 (683)
T ss_pred ------c----------CCCCEEEEecCCcHHHHHHHH---------hccCccccEEEEEEEccCCccHhH-----HHHH
Confidence 0 125688999999976652211 112 23599999999999999987 4555
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
...+..+.|+|+++||||.....-- ..+ ++|. .++..++.+.+.++++|+||++|+|++.|
T Consensus 247 khAk~A~VpiVvAinKiDkp~a~pe-kv~---~eL~---------------~~gi~~E~~GGdVQvipiSAl~g~nl~~L 307 (683)
T KOG1145|consen 247 KHAKSANVPIVVAINKIDKPGANPE-KVK---RELL---------------SQGIVVEDLGGDVQVIPISALTGENLDLL 307 (683)
T ss_pred HHHHhcCCCEEEEEeccCCCCCCHH-HHH---HHHH---------------HcCccHHHcCCceeEEEeecccCCChHHH
Confidence 6778899999999999998764311 111 2111 12344557777899999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
.+++.....
T Consensus 308 ~eaill~Ae 316 (683)
T KOG1145|consen 308 EEAILLLAE 316 (683)
T ss_pred HHHHHHHHH
Confidence 999877654
No 190
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=4.4e-17 Score=155.56 Aligned_cols=119 Identities=16% Similarity=0.063 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC--CCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR--LPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~D 242 (324)
..+++|+||||++.... ..+...+.+.+ ..+|+|+||||+.......+.. .++.+...+ .|+++|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~-~~L~k~M~eqL--~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQ-PHLQKMLNQQL--ARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccc-hHHHHHHHHHH--hhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEccc
Confidence 46899999999987521 12344455533 3469999999998766554422 123444445 49999999999
Q ss_pred cCChHh--HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 243 VAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 243 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
+.+... ...+...+.... . ....++..||||||++|.|++.|++.|...
T Consensus 301 l~dreeddkE~Lle~V~~~L-----------------~---q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTL-----------------M---KGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCCcccchHHHHHHHHHHHH-----------------H---hcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 975321 111111111000 0 012245789999999999999999999884
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.74 E-value=3.1e-17 Score=133.28 Aligned_cols=118 Identities=23% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCcchhhhhhh-HHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
...+.||||||+.++...... .......+ ..+|++++++|+.......... ........+.|+++|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 568999999998775321111 01111112 3468999999998876554422 123445578999999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
............... ........+++++||+++.|+++++..|.+.
T Consensus 117 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 117 LPEEEEEELLELRLL----------------------ILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CChhhHHHHHHHHHh----------------------hcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 886544333210000 0023456899999999999999999998765
No 192
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=5.2e-17 Score=144.59 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+.++.||||||+.++.. .....+ ..+|++++|||+..+...++. ..+..+...++|+++++||+|+
T Consensus 62 ~~~~i~liDTPG~~df~~------~~~~~l--~~aD~ailVVDa~~g~~~~t~-----~~~~~~~~~~~p~ivviNK~D~ 128 (270)
T cd01886 62 KDHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVAGVEPQTE-----TVWRQADRYNVPRIAFVNKMDR 128 (270)
T ss_pred CCEEEEEEECCCcHHHHH------HHHHHH--HHcCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence 467899999999877521 122222 235899999999998866542 2224455678999999999999
Q ss_pred CCh
Q 020549 244 AQH 246 (324)
Q Consensus 244 ~~~ 246 (324)
...
T Consensus 129 ~~a 131 (270)
T cd01886 129 TGA 131 (270)
T ss_pred CCC
Confidence 753
No 193
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.73 E-value=2.4e-17 Score=139.33 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=90.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+|+|++|+|||||+++|....+......++ ...+ ... +...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~------~~~~--~~~-----------------------~~~~----- 45 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTV------FENY--VTD-----------------------CRVD----- 45 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc------cceE--EEE-----------------------EEEC-----
Confidence 479999999999999999998665543221111 0000 000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchh-HHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMT-FMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~-~~~~~~~~~~~ 226 (324)
.....+.+|||||+.++.... .. .+ ..+++++++.|. ..++.... .|...+ ..
T Consensus 46 -------------~~~~~l~i~Dt~g~~~~~~~~--~~----~~--~~a~~~llv~~i~~~~s~~~~~~~~~~~i---~~ 101 (187)
T cd04129 46 -------------GKPVQLALWDTAGQEEYERLR--PL----SY--SKAHVILIGFAVDTPDSLENVRTKWIEEV---RR 101 (187)
T ss_pred -------------CEEEEEEEEECCCChhccccc--hh----hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence 113467899999987652111 00 11 334666655554 44443332 343333 21
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHH--HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEW--MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
...+.|+|+|+||+|+.......+. ........ ....++ ......+++++||++|.||+++
T Consensus 102 -~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~~~e~Sa~~~~~v~~~ 164 (187)
T cd04129 102 -YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQ--------QGKRVA--------KEIGAKKYMECSALTGEGVDDV 164 (187)
T ss_pred -hCCCCCEEEEeeChhhhhCcccccccccCCcCCHH--------HHHHHH--------HHhCCcEEEEccCCCCCCHHHH
Confidence 2246999999999998542110000 00000000 000011 1123357999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
|+.+.+.+.
T Consensus 165 f~~l~~~~~ 173 (187)
T cd04129 165 FEAATRAAL 173 (187)
T ss_pred HHHHHHHHh
Confidence 999997664
No 194
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.73 E-value=5.9e-18 Score=139.33 Aligned_cols=159 Identities=18% Similarity=0.252 Sum_probs=96.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
||+++|++|||||||+++|.+..+...+..++ +....... +...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~-----~~~~~~~~--~~~~----------------------------- 44 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI-----GIDSYSKE--VSID----------------------------- 44 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS-----SEEEEEEE--EEET-----------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc-----cccccccc--cccc-----------------------------
Confidence 69999999999999999999987765332110 00000000 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.|||++|+.++.. . ....+ ..+|+++++.|. ..++.....|...+ ....
T Consensus 45 ------------~~~~~l~i~D~~g~~~~~~---~---~~~~~--~~~~~~ii~fd~~~~~S~~~~~~~~~~i---~~~~ 101 (162)
T PF00071_consen 45 ------------GKPVNLEIWDTSGQERFDS---L---RDIFY--RNSDAIIIVFDVTDEESFENLKKWLEEI---QKYK 101 (162)
T ss_dssp ------------TEEEEEEEEEETTSGGGHH---H---HHHHH--TTESEEEEEEETTBHHHHHTHHHHHHHH---HHHS
T ss_pred ------------ccccccccccccccccccc---c---ccccc--cccccccccccccccccccccccccccc---cccc
Confidence 2245788999999877521 1 11112 234566666654 34444444554333 3333
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+.|+++|+||+|+.....+. .++.+.+. ... ..+++++||+++.||.++|..+
T Consensus 102 ~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 102 PEDIPIIVVGNKSDLSDEREVS--VEEAQEFA----------------------KEL-GVPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp TTTSEEEEEEETTTGGGGSSSC--HHHHHHHH----------------------HHT-TSEEEEEBTTTTTTHHHHHHHH
T ss_pred cccccceeeeccccccccccch--hhHHHHHH----------------------HHh-CCEEEEEECCCCCCHHHHHHHH
Confidence 4468999999999988632211 01111111 112 3899999999999999999999
Q ss_pred HHHHH
Q 020549 309 EESAQ 313 (324)
Q Consensus 309 ~~~~~ 313 (324)
++.+.
T Consensus 157 i~~i~ 161 (162)
T PF00071_consen 157 IRKIL 161 (162)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 195
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=139.49 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=108.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..+.|+|.|+||||||||++++++.... +.+||+||. .. +-|...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE-------------vA~YPFTTK----~i--------------~vGhfe---- 211 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE-------------VAPYPFTTK----GI--------------HVGHFE---- 211 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCc-------------cCCCCcccc----ce--------------eEeeee----
Confidence 4577999999999999999999998654 788999981 10 001111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCch-hHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPM-TFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~ 225 (324)
.+...++++||||+.+.-............++ ....++|+|++|.+..+.-. .....++. .
T Consensus 212 ---------------~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~--e 274 (346)
T COG1084 212 ---------------RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLE--E 274 (346)
T ss_pred ---------------cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHH--H
Confidence 23568999999998764111111111111111 24568999999998765432 22222222 1
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.......|+++|+||+|+...+...+....+. -......+.+|+..+.+++.+.
T Consensus 275 Ik~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~d~~~ 328 (346)
T COG1084 275 IKELFKAPIVVVINKIDIADEEKLEEIEASVL--------------------------EEGGEEPLKISATKGCGLDKLR 328 (346)
T ss_pred HHHhcCCCeEEEEecccccchhHHHHHHHHHH--------------------------hhccccccceeeeehhhHHHHH
Confidence 22234589999999999998765443332221 0122346679999999999988
Q ss_pred HHHHHHHHHHH
Q 020549 306 KAVEESAQEFM 316 (324)
Q Consensus 306 ~~i~~~~~~~~ 316 (324)
..+.....+..
T Consensus 329 ~~v~~~a~~~~ 339 (346)
T COG1084 329 EEVRKTALEPL 339 (346)
T ss_pred HHHHHHhhchh
Confidence 88877754443
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=1.3e-16 Score=139.28 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=38.7
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
.+|+++|+||+|+.+.+.... + ....+++++||++|.|++++++.|.+
T Consensus 176 y~p~iiV~NK~Dl~~~~~~~~----~----------------------------~~~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 176 YIPCLYVYNKIDLISIEELDL----L----------------------------ARQPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred EeeEEEEEECccCCCHHHHHH----H----------------------------hcCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 369999999999987653321 1 12246899999999999999999988
Q ss_pred HH
Q 020549 311 SA 312 (324)
Q Consensus 311 ~~ 312 (324)
.+
T Consensus 224 ~L 225 (233)
T cd01896 224 KL 225 (233)
T ss_pred Hh
Confidence 65
No 197
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=7.2e-17 Score=151.56 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
+..+.||||||+++|.. .+...+ ..+|++++|||+.++...++. ..+..+...++| +|+|+||+|+
T Consensus 74 ~~~i~~iDtPGh~~f~~------~~~~~~--~~~d~~llVvd~~~g~~~~t~-----~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 KRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVAATDGPMPQTR-----EHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CcEEEEEECCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCEEEEEEEecCC
Confidence 56789999999766521 111111 357999999999988776652 223445567888 5789999999
Q ss_pred CChHhHHHH-HHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCC--------ChHHHHHHHHHHHH
Q 020549 244 AQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA--------GIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~--------gv~~l~~~i~~~~~ 313 (324)
++.+...+. .+++..+.+.+ .+ ....+++++||++|. ++..|++.|.+.++
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEY-------------------DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHh-------------------CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 865433222 22333222111 11 124689999999983 67888888888765
No 198
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=1.5e-16 Score=141.58 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=48.4
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+.+.++.||||||+.+|.. .....+ ..+|.+++|+|+..+...... ..+......++|+++++||+|
T Consensus 68 ~~~~~i~liDTPG~~df~~------~~~~~l--~~aD~~IlVvda~~g~~~~~~-----~i~~~~~~~~~P~iivvNK~D 134 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSE------DTYRTL--TAVDSAVMVIDAAKGVEPQTR-----KLFEVCRLRGIPIITFINKLD 134 (267)
T ss_pred eCCEEEEEEECCCchHHHH------HHHHHH--HHCCEEEEEEECCCCccHHHH-----HHHHHHHhcCCCEEEEEECCc
Confidence 3477899999999877621 122222 236999999999887654331 112334456899999999999
Q ss_pred cCCh
Q 020549 243 VAQH 246 (324)
Q Consensus 243 l~~~ 246 (324)
+...
T Consensus 135 ~~~a 138 (267)
T cd04169 135 REGR 138 (267)
T ss_pred cCCC
Confidence 8754
No 199
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.7e-16 Score=151.27 Aligned_cols=202 Identities=18% Similarity=0.246 Sum_probs=115.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
-+.++|||+|+...|||-|+..|.+.....+.-..+ +..-+.+.+.+...
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggi-------tqqIgAt~fp~~ni----------------------- 522 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGI-------TQQIGATYFPAENI----------------------- 522 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccce-------eeeccccccchHHH-----------------------
Confidence 356779999999999999999998865544322222 11111111111110
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
...++...........-+.+++|||||++.|... +..-+++||++|+|||..+|+.+++ +..++.
T Consensus 523 --~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl--------RsrgsslC~~aIlvvdImhGlepqt-----iESi~l 587 (1064)
T KOG1144|consen 523 --REKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL--------RSRGSSLCDLAILVVDIMHGLEPQT-----IESINL 587 (1064)
T ss_pred --HHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh--------hhccccccceEEEEeehhccCCcch-----hHHHHH
Confidence 0011111111111133567899999997666221 1112367899999999999999987 555677
Q ss_pred HhhcCCCeEEEeeccccCChHhH---HHHHHhHH----HHHHHHhcCc-cchhhHHHHHHHhHHHHh------ccCceee
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFA---LEWMQDFE----VFQAAISSDH-SYTSTLTNSLSLALDEFY------KNLKSVG 292 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~----~l~~~~~~~~-~~~~~l~~~~~~~~~~~~------~~~~iv~ 292 (324)
+.....|+|+++||+|.+..... ..+...+. .....++.+. .....|+ ++++-.+-|| ..+.+||
T Consensus 588 LR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa-EQgLN~~LyykNk~~~~~vsiVP 666 (1064)
T KOG1144|consen 588 LRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA-EQGLNAELYYKNKEMGETVSIVP 666 (1064)
T ss_pred HHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HcccchhheeecccccceEEeee
Confidence 88889999999999998754211 01111111 1111110000 0000111 1111111222 2467999
Q ss_pred eccccCCChHHHHHHHHHHHHH
Q 020549 293 VSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 293 vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
+||.+|+||.+|+.+|++....
T Consensus 667 TSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 667 TSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred cccccCCCcHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 200
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.72 E-value=2.9e-17 Score=160.89 Aligned_cols=115 Identities=25% Similarity=0.326 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+.++.+|||||+.++.............+....+|++++|+|+++..... .....+...++|+++|+||+|+.
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l-------~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNL-------YLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhH-------HHHHHHHhcCCCEEEEEehhHHH
Confidence 45689999999987633222222222333345679999999997632211 11123345689999999999986
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
+...... +.+.+.+ . -+.+++++||++|+|++++++.+.+..
T Consensus 113 ~~~~i~~---d~~~L~~----------------------~-lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 113 EKKGIRI---DEEKLEE----------------------R-LGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HhCCChh---hHHHHHH----------------------H-cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5432211 1121111 1 247899999999999999999998754
No 201
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.72 E-value=7.1e-17 Score=131.05 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=37.6
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
+.|+++|+||+|+...... ....... ......+++++||++|.|+++++..|.
T Consensus 108 ~~p~ivv~nK~D~~~~~~~----~~~~~~~----------------------~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLK----THVAFLF----------------------AKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchhh----HHHHHHH----------------------hhccCCceEEeecCCCCCHHHHHHHhh
Confidence 7899999999999865411 1111111 112346799999999999999998863
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.72 E-value=1.1e-16 Score=150.99 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D 242 (324)
...+.||||||+++|.. .+.... ..+|++++|||+.++. ..+.. +.+ ..+...+ .|+++|+||+|
T Consensus 79 ~~~i~liDtPGh~~f~~------~~~~g~--~~aD~aIlVVDa~~g~~~~qt~--e~l---~~l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMA------TMLSGA--ALMDGALLVIAANEPCPQPQTK--EHL---MALEIIGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHH------HHHHHH--HHCCEEEEEEECCCCccccchH--HHH---HHHHHcCCCeEEEEEEccc
Confidence 35789999999877521 121111 3469999999999876 44331 112 2233344 46899999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
+.+.+...+..+++..+.+. .+....+++++||++|.|+++|++.|...++
T Consensus 146 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 146 LVSKEKALENYEEIKEFVKG--------------------TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cCCHHHHHHHHHHHHhhhhh--------------------cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 98765432222222211110 0123578999999999999999999998765
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.72 E-value=2.6e-16 Score=129.54 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=72.6
Q ss_pred CEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549 167 DYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (324)
Q Consensus 167 ~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 241 (324)
.+.+|||||+..... .......+..++.. ...+.+++++|.......... .....+...+.|+++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-----~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL-----EMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-----HHHHHHHHcCCCEEEEEEch
Confidence 788999999654311 01111122233332 234788899988765433321 11234455679999999999
Q ss_pred ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
|+.+...............+ ......+++++||+++.|++++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~---------------------~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELK---------------------LFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHH---------------------hccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 99876543322222221100 12345789999999999999999999875
No 204
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=140.19 Aligned_cols=198 Identities=19% Similarity=0.246 Sum_probs=123.2
Q ss_pred hhhhhhhhHhhhhhhhhhhhccc--cCCCCC--CCccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 32 KANDKEKEEITESMDKLHIEESS--SGLAGS--SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
|.++.....++.+|.+++.+... .+..+. .-.-....-..|+++|+|++|||||+++|++....
T Consensus 22 KaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~se------------ 89 (365)
T COG1163 22 KATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSE------------ 89 (365)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcc------------
Confidence 44555556778888888776655 222111 11112334467999999999999999999987543
Q ss_pred cccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hH
Q 020549 108 AVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SG 186 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~ 186 (324)
+.+++|||- ..+ -|++. ..+.+++|+|+||+.+-...+. .+
T Consensus 90 -va~y~FTTl----~~V--------------PG~l~-------------------Y~ga~IQild~Pgii~gas~g~grG 131 (365)
T COG1163 90 -VADYPFTTL----EPV--------------PGMLE-------------------YKGAQIQLLDLPGIIEGASSGRGRG 131 (365)
T ss_pred -ccccCceec----ccc--------------cceEe-------------------ecCceEEEEcCcccccCcccCCCCc
Confidence 667777771 111 12222 3488999999999887533222 12
Q ss_pred HHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH--------------------------------------------HH
Q 020549 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM--------------------------------------------LY 222 (324)
Q Consensus 187 ~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~--------------------------------------------~~ 222 (324)
.++.... ..||++++|+|+.......+.+..+ +.
T Consensus 132 ~~vlsv~--R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~ 209 (365)
T COG1163 132 RQVLSVA--RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILR 209 (365)
T ss_pred ceeeeee--ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHH
Confidence 2222222 3479999999986544321111111 11
Q ss_pred -------------------HHHHH--hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhH
Q 020549 223 -------------------ACSIL--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLAL 281 (324)
Q Consensus 223 -------------------~~~~~--~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 281 (324)
.+..+ ...-+|.+.|+||+|+.+.+....+ .
T Consensus 210 Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l----~------------------------ 261 (365)
T COG1163 210 EYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERL----A------------------------ 261 (365)
T ss_pred HhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHH----H------------------------
Confidence 00111 1234799999999999985532211 1
Q ss_pred HHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 282 DEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 282 ~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
...+.+++||++|.|+++|.+.|.+.+.
T Consensus 262 ----~~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 262 ----RKPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ----hccceEEEecccCCCHHHHHHHHHHhhC
Confidence 1237899999999999999999998764
No 205
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=3.6e-18 Score=130.41 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=107.3
Q ss_pred EEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHH
Q 020549 74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD 153 (324)
Q Consensus 74 iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (324)
++|.+++|||.|+-++-...|..+.-+..++ +|.|+.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvg-------------id~rnkl----------------------------- 39 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVG-------------IDFRNKL----------------------------- 39 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeee-------------eccccce-----------------------------
Confidence 6899999999999888776665443332222 2223221
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC
Q 020549 154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p 233 (324)
+......+++++|||+||++|. + ....+.+.+.+-+++|.|.+..+++....|...+ ..+.+..+.
T Consensus 40 -----i~~~~~kvklqiwdtagqerfr--s----vt~ayyrda~allllydiankasfdn~~~wlsei---~ey~k~~v~ 105 (192)
T KOG0083|consen 40 -----IDMDDKKVKLQIWDTAGQERFR--S----VTHAYYRDADALLLLYDIANKASFDNCQAWLSEI---HEYAKEAVA 105 (192)
T ss_pred -----eccCCcEEEEEEeeccchHHHh--h----hhHhhhcccceeeeeeecccchhHHHHHHHHHHH---HHHHHhhHh
Confidence 0011346789999999999982 2 2223344444456777777888888877775544 455666788
Q ss_pred eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 234 ~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
+.+++||||+.+...+. .++ +..|++++ +.|+.++|||+|-||+..|-.|.+.+.
T Consensus 106 l~llgnk~d~a~er~v~--~dd--------------g~kla~~y---------~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 106 LMLLGNKCDLAHERAVK--RDD--------------GEKLAEAY---------GIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred Hhhhccccccchhhccc--cch--------------HHHHHHHH---------CCCceeccccccccHhHHHHHHHHHHH
Confidence 89999999997643221 011 22233322 478999999999999999999999876
Q ss_pred HHH
Q 020549 314 EFM 316 (324)
Q Consensus 314 ~~~ 316 (324)
..+
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 543
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.71 E-value=1e-16 Score=152.32 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHhhcCC-CeEEEeec
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRL-PLVLAFNK 240 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK 240 (324)
.+..+.||||||+.++.. .+... ...+|++++|+|+.+ +...++.+. + ..+...+. |+++|+||
T Consensus 82 ~~~~i~liDtpG~~~~~~------~~~~~--~~~aD~~ilVvDa~~~~~~~~~~~~~--~---~~~~~~~~~~iivviNK 148 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVK------NMITG--ASQADAAVLVVAADDAGGVMPQTREH--V---FLARTLGINQLIVAINK 148 (425)
T ss_pred CCeEEEEEECCCcccchh------hHhhc--hhcCCEEEEEEEcccCCCCCcchHHH--H---HHHHHcCCCeEEEEEEc
Confidence 367899999999876521 11111 134799999999988 665554332 2 22333454 68999999
Q ss_pred cccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHHH
Q 020549 241 TDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 241 ~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~ 305 (324)
+|+... +......+++..+.+.. .+. ...+++++||++|.|++++.
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~-------------------g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMV-------------------GYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhh-------------------CCCcCcceEEEeecccCCCccccc
Confidence 999752 22222222222221110 110 13679999999999998743
No 207
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.71 E-value=1.2e-16 Score=133.60 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=96.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..+|+++|..|||||||+++|....... ...+....+..+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~--------------------------------- 54 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIK--------------------------------- 54 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEE---------------------------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceee---------------------------------
Confidence 466889999999999999999998753321 1110000000000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh-hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-H
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF-TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-C 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~ 224 (324)
..+..+.|||.+|+..+. .|.... ..+|.+|||||+++... .......+.. +
T Consensus 55 ----------------~~~~~~~~~d~gG~~~~~~~w~~y~---------~~~~~iIfVvDssd~~~-l~e~~~~L~~ll 108 (175)
T PF00025_consen 55 ----------------YKGYSLTIWDLGGQESFRPLWKSYF---------QNADGIIFVVDSSDPER-LQEAKEELKELL 108 (175)
T ss_dssp ----------------ETTEEEEEEEESSSGGGGGGGGGGH---------TTESEEEEEEETTGGGG-HHHHHHHHHHHH
T ss_pred ----------------eCcEEEEEEeccccccccccceeec---------cccceeEEEEeccccee-ecccccchhhhc
Confidence 125688999999986642 121111 23589999999975321 1111111211 1
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++++||+|+...-...++...+. + ..+ .......++.|||++|+|+.+.
T Consensus 109 ~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~-l-----------~~l---------~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 109 NDPELKDIPILILANKQDLPDAMSEEEIKEYLG-L-----------EKL---------KNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp TSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT-G-----------GGT---------TSSSCEEEEEEBTTTTBTHHHH
T ss_pred chhhcccceEEEEeccccccCcchhhHHHhhhh-h-----------hhc---------ccCCceEEEeeeccCCcCHHHH
Confidence 111124699999999999876432222222111 0 000 0012467999999999999999
Q ss_pred HHHHHHHH
Q 020549 305 FKAVEESA 312 (324)
Q Consensus 305 ~~~i~~~~ 312 (324)
+++|.+.+
T Consensus 168 l~WL~~~~ 175 (175)
T PF00025_consen 168 LEWLIEQI 175 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998764
No 208
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=8.4e-17 Score=139.10 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=98.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|++|||||||+++++...+...+.+++.. .+....+. ..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~---~~~~~~~~---------------------------~~-- 54 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV---EVHPLKFY---------------------------TN-- 54 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEEE---------------------------EC--
Confidence 34578999999999999999888776554333221100 00000000 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.+|||+|+.++.. . ....+ ..++.+++++|..... .....|...+
T Consensus 55 ----------------~~~i~i~~~Dt~g~~~~~~--~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i--- 107 (215)
T PTZ00132 55 ----------------CGPICFNVWDTAGQEKFGG--L----RDGYY--IKGQCAIIMFDVTSRITYKNVPNWHRDI--- 107 (215)
T ss_pred ----------------CeEEEEEEEECCCchhhhh--h----hHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHH---
Confidence 2246788999999876521 1 11112 2347788888876432 2222332222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
... ..++|+++|+||+|+.......+.. . +. . ..+..++++||++|.|++++
T Consensus 108 ~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~-~---~~----------------------~-~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 108 VRV-CENIPIVLVGNKVDVKDRQVKARQI-T---FH----------------------R-KKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred HHh-CCCCCEEEEEECccCccccCCHHHH-H---HH----------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence 112 2468999999999986432111111 0 00 1 12467899999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 020549 305 FKAVEESAQEFMETY 319 (324)
Q Consensus 305 ~~~i~~~~~~~~~~~ 319 (324)
|..|.+.+...+..+
T Consensus 160 f~~ia~~l~~~p~~~ 174 (215)
T PTZ00132 160 FLWLARRLTNDPNLV 174 (215)
T ss_pred HHHHHHHHhhcccce
Confidence 999999887655544
No 209
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=1.5e-16 Score=150.18 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
+.++.|+||||+.+|.. .+...+ ..+|++++|||+..+...++. ..+..+...++| +|+|+||+|+
T Consensus 74 ~~~~~~iDtPGh~~~~~------~~~~~~--~~~D~~ilVvda~~g~~~qt~-----~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 74 NRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVSAADGPMPQTK-----EHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CeEEEEEECCChHHHHH------HHHHHH--HhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEccCC
Confidence 56789999999765421 121222 346999999999988776552 223445567889 6789999999
Q ss_pred CChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC
Q 020549 244 AQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG 300 (324)
Q Consensus 244 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g 300 (324)
++.+...+.. +++..+.+.+ .+. ...+++++||++|.|
T Consensus 141 ~~~~~~~~~~~~~l~~~l~~~-------------------~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 141 VDDEELLELVELEVRELLSKY-------------------DFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHh-------------------CCCCCcceEEEcchhhccc
Confidence 8754432221 2333222111 111 137899999999863
No 210
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=9.9e-17 Score=157.13 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||+.+|.. .+.+.++ .+|++++|+|+.++...++... +......++|+|+|+||+|+.
T Consensus 69 ~~~l~liDTPG~~dF~~------~v~~~l~--~aD~aILVvDat~g~~~qt~~~-----~~~~~~~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSY------EVSRSLA--ACEGALLLVDAAQGIEAQTLAN-----VYLALENDLEIIPVINKIDLP 135 (595)
T ss_pred EEEEEEEECCCcHHHHH------HHHHHHH--hCCEEEEEecCCCCCCHhHHHH-----HHHHHHcCCCEEEEEECcCCC
Confidence 36789999999988622 2222332 3689999999998876654211 112234578999999999986
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
.... ....+++. + .++ ....+++++||++|.|+++|++.|.+.++.
T Consensus 136 ~~~~-~~~~~el~---~--------------~lg------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 136 SADP-ERVKKEIE---E--------------VIG------LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ccCH-HHHHHHHH---H--------------HhC------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 4321 11111221 1 000 112358999999999999999999988764
No 211
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.70 E-value=1.1e-15 Score=133.39 Aligned_cols=202 Identities=19% Similarity=0.273 Sum_probs=126.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGI 141 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~ 141 (324)
..+..+|+|.|.||||||||+..|.......+..+.|+..||.. .++++. -+-++++.++.-..-+. .++.|.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGs--iLGDRiRM~~~~~~~~vFiRs~~srG~ 124 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGS--ILGDRIRMQRLAVDPGVFIRSSPSRGT 124 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCcc--ccccHhhHHhhccCCCeEEeecCCCcc
Confidence 34567899999999999999999999999999999999999854 333332 23455555443322111 112222
Q ss_pred cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
.- .+|......+..+++. +++++|++|.|..+.- ..+. ..+|++++|.-+..+-+-+..-..++
T Consensus 125 lG---GlS~at~~~i~~ldAa--G~DvIIVETVGvGQse------v~I~-----~~aDt~~~v~~pg~GD~~Q~iK~Gim 188 (323)
T COG1703 125 LG---GLSRATREAIKLLDAA--GYDVIIVETVGVGQSE------VDIA-----NMADTFLVVMIPGAGDDLQGIKAGIM 188 (323)
T ss_pred ch---hhhHHHHHHHHHHHhc--CCCEEEEEecCCCcch------hHHh-----hhcceEEEEecCCCCcHHHHHHhhhh
Confidence 22 3566666666666644 7999999999976641 1121 22588888887765544443333333
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCC
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAG 300 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~g 300 (324)
.+.-|+|+||.|+...+... .++...+.... ..+ .... ..|++.+||.+|+|
T Consensus 189 ---------EiaDi~vINKaD~~~A~~a~---r~l~~al~~~~--------------~~~-~~~~W~ppv~~t~A~~g~G 241 (323)
T COG1703 189 ---------EIADIIVINKADRKGAEKAA---RELRSALDLLR--------------EVW-RENGWRPPVVTTSALEGEG 241 (323)
T ss_pred ---------hhhheeeEeccChhhHHHHH---HHHHHHHHhhc--------------ccc-cccCCCCceeEeeeccCCC
Confidence 34559999999965543221 11111111100 000 1111 35899999999999
Q ss_pred hHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQ 313 (324)
Q Consensus 301 v~~l~~~i~~~~~ 313 (324)
+++|++.|.++..
T Consensus 242 i~~L~~ai~~h~~ 254 (323)
T COG1703 242 IDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 212
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=3.2e-16 Score=148.71 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 243 (324)
+.++.|+||||+++|.. .+...+ ..+|++++|||+.++...++ ...+..+...++|. |+|+||+|+
T Consensus 123 ~~~i~~iDtPGh~~f~~------~~~~g~--~~aD~allVVda~~g~~~qt-----~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 123 KRHYAHVDCPGHADYVK------NMITGA--AQMDGGILVVSAPDGPMPQT-----KEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CeEEEEEECCCccchHH------HHHHHH--hhCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEEEeecc
Confidence 56889999999876521 111111 34799999999998876655 22334566678995 689999999
Q ss_pred CChHhHHHHHH-hHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccc---cCCC-------hHHHHHHHHHH
Q 020549 244 AQHEFALEWMQ-DFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSV---SGAG-------IEAYFKAVEES 311 (324)
Q Consensus 244 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~---~g~g-------v~~l~~~i~~~ 311 (324)
++.+...+..+ ++..+...+ .| ....+++++||. +|.| +..|++.|...
T Consensus 190 v~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 190 VDDEELLELVEMELRELLSFY-------------------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHHh-------------------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 86543322221 222221110 11 123688999886 4555 77888888887
Q ss_pred HH
Q 020549 312 AQ 313 (324)
Q Consensus 312 ~~ 313 (324)
++
T Consensus 251 lp 252 (447)
T PLN03127 251 IP 252 (447)
T ss_pred CC
Confidence 65
No 213
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=1.1e-16 Score=143.02 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+.++.||||||+.++.. .....+ ..+|.+++|+|+..+..... ...+..+...++|+++|+||+|+
T Consensus 62 ~~~~i~liDtPG~~~f~~------~~~~~l--~~aD~~i~Vvd~~~g~~~~~-----~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 62 KGHKINLIDTPGYADFVG------ETRAAL--RAADAALVVVSAQSGVEVGT-----EKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred CCEEEEEEECcCHHHHHH------HHHHHH--HHCCEEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCcc
Confidence 356889999999866521 122222 23699999999988765442 11123445678999999999998
Q ss_pred CCh
Q 020549 244 AQH 246 (324)
Q Consensus 244 ~~~ 246 (324)
...
T Consensus 129 ~~~ 131 (268)
T cd04170 129 ERA 131 (268)
T ss_pred CCC
Confidence 865
No 214
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=9.5e-17 Score=153.63 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D 242 (324)
.+.++.||||||+.+|.. .+...+ ..+|++++|||+..+...++... + ..+...+ .|+|+|+||+|
T Consensus 105 ~~~~i~~iDTPGh~~f~~------~~~~~l--~~aD~allVVDa~~G~~~qt~~~--~---~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTR------NMATGA--STCDLAILLIDARKGVLDQTRRH--S---FIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcHHHHH------HHHHHH--hhCCEEEEEEECCCCccccchHH--H---HHHHHhCCCceEEEEEeec
Confidence 356899999999655411 122221 45799999999999887665321 1 1222233 46889999999
Q ss_pred cCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
++..+ ...+....+..+.+.+ .+....+++|+||++|.|++.+
T Consensus 172 ~~~~~~~~~~~i~~~l~~~~~~~-------------------~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQL-------------------PGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHhc-------------------CCCCCceEEEEEeecCCCcccc
Confidence 98532 1222222222111110 1123578999999999999875
No 215
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=2.7e-16 Score=147.83 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeE-EEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 243 (324)
+.++.|+||||+++|.. .+... ...+|++++|+|+..+...++. ..+..+...++|.+ +|+||+|+
T Consensus 74 ~~~i~~iDtPGh~~f~~------~~~~~--~~~aD~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 74 NRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CcEEEEEECCCHHHHHH------HHHhh--hccCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecCC
Confidence 56789999999865421 11111 1457999999999987765542 22244556788976 57999999
Q ss_pred CChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCC----------ChHHHHHHHHHH
Q 020549 244 AQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGA----------GIEAYFKAVEES 311 (324)
Q Consensus 244 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~----------gv~~l~~~i~~~ 311 (324)
.+.+...+.. .++..+.+.. .+. ...+++++||++|. ++..|++.|...
T Consensus 141 ~~~~~~~~~~~~ei~~~l~~~-------------------~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 141 VDDEELLELVEMEVRELLSKY-------------------DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHc-------------------CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 8643322221 1232222110 111 13789999999984 678899888887
Q ss_pred HH
Q 020549 312 AQ 313 (324)
Q Consensus 312 ~~ 313 (324)
++
T Consensus 202 ~~ 203 (396)
T PRK12735 202 IP 203 (396)
T ss_pred CC
Confidence 64
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.69 E-value=3e-16 Score=147.92 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcCC-CeEEEeeccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRL-PLVLAFNKTD 242 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D 242 (324)
..+.||||||+.+|.. .++.. ..+|++++|+|+.++. ..++.. .+ ..+...+. |+++|+||+|
T Consensus 85 ~~i~liDtPG~~~f~~---------~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l---~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 85 RRVSFVDAPGHETLMA---------TMLSGAALMDGAILVIAANEPCPQPQTKE--HL---MALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cEEEEEECCCHHHHHH---------HHHHHHhhCCEEEEEEECCCCCCChhHHH--HH---HHHHHcCCCcEEEEEEeec
Confidence 5789999999766521 11211 3469999999999875 343311 12 22333444 6899999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
+.+.+......+.+..+.+. .+....+++++||++|.|+++|++.|...++.
T Consensus 151 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 151 LVSKERALENYEQIKEFVKG--------------------TVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred cccchhHHHHHHHHHHHhcc--------------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 98754332222222211110 01234789999999999999999999987653
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=1.1e-16 Score=138.84 Aligned_cols=107 Identities=18% Similarity=0.272 Sum_probs=62.2
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-------CchhHHHhHHHHHHHHhhcC-CCeE
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTR-LPLV 235 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~~~-~p~i 235 (324)
.+..+.||||||+.++.. .+... ...+|++++|||+..+. ..+.. ..+......+ .|+|
T Consensus 75 ~~~~i~liDtpG~~~~~~------~~~~~--~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ii 141 (219)
T cd01883 75 EKYRFTILDAPGHRDFVP------NMITG--ASQADVAVLVVDARKGEFEAGFEKGGQTR-----EHALLARTLGVKQLI 141 (219)
T ss_pred CCeEEEEEECCChHHHHH------HHHHH--hhhCCEEEEEEECCCCccccccccccchH-----HHHHHHHHcCCCeEE
Confidence 467899999999866521 11111 13479999999998742 22221 1112223344 6889
Q ss_pred EEeeccccCCh----HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChH
Q 020549 236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 236 lv~NK~Dl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~ 302 (324)
+|+||+|+... .......+.+..+.+.+ .+ ....+++++||++|.|++
T Consensus 142 ivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~-------------------~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 142 VAVNKMDDVTVNWSEERYDEIKKELSPFLKKV-------------------GYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEccccccccccHHHHHHHHHHHHHHHHHc-------------------CCCcCCceEEEeecCcCCCCC
Confidence 99999999842 22222222222111110 01 013689999999999987
No 218
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=4.5e-16 Score=147.53 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 243 (324)
..+.|+||||+++|.. .+...+ ..+|++++|||+.++ ..+++. + ++..+...++ ++|+|+||+|+
T Consensus 117 ~~i~~IDtPGH~~fi~------~m~~g~--~~~D~alLVVda~~g~~~~qT~--e---hl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHDILMA------TMLNGA--AVMDAALLLIAANESCPQPQTS--E---HLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCccchhhH--H---HHHHHHHcCCCcEEEEEecccc
Confidence 4688999999765411 121111 356999999999986 455431 1 1233334555 57899999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
++.+...+..+++..+.+. .+....+++++||++|.|++.|++.|.+.++.
T Consensus 184 v~~~~~~~~~~ei~~~l~~--------------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKG--------------------TIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHh--------------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 9765544444444322211 11246799999999999999999999976653
No 219
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.6e-17 Score=128.05 Aligned_cols=172 Identities=21% Similarity=0.316 Sum_probs=108.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcH-HHHHHHHHHcCCCCCCccccccccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDT-IRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
+++..+|.+|+||||++-++....|......++ +.| .|.. +.+. .-+++++- .
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV-GID-------------FreKrvvY~------s~gp~g~g-r----- 63 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV-GID-------------FREKRVVYN------SSGPGGGG-R----- 63 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEe-ecc-------------cccceEEEe------ccCCCCCC-c-----
Confidence 456788999999999999999888876554433 222 1111 0000 00111110 0
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
...+.+++|||+||++| ++ .....++.+..-+++|.+.+..++.....|...+... ..
T Consensus 64 --------------~~rihLQlWDTAGQERF--RS----LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h--AY 121 (219)
T KOG0081|consen 64 --------------GQRIHLQLWDTAGQERF--RS----LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH--AY 121 (219)
T ss_pred --------------ceEEEEeeeccccHHHH--HH----HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh--hc
Confidence 23567899999999998 22 2222334455678899998888887777775544322 22
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+-.+|+++||+|+.+...+.+. +.. .|++. | +.|++++||.+|.||++..+.|
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~--qa~--------------~La~k-------y--glPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSED--QAA--------------ALADK-------Y--GLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHH--HHH--------------HHHHH-------h--CCCeeeeccccCcCHHHHHHHH
Confidence 345567889999999876533211 111 12222 1 5899999999999999988888
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
...+.+
T Consensus 177 ldlvM~ 182 (219)
T KOG0081|consen 177 LDLVMK 182 (219)
T ss_pred HHHHHH
Confidence 777654
No 220
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.68 E-value=8.9e-16 Score=132.82 Aligned_cols=176 Identities=24% Similarity=0.233 Sum_probs=104.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|.+..+...+.+++.+..+.....+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~---------------------------------- 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR---------------------------------- 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC----------------------------------
Confidence 7899999999999999999999999887766664444333211111
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCc-hhHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANP-MTFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~-~~~~~~~~~~~~~ 226 (324)
...++.+|||+|+.++. ..+..+.. .++.+++++|... +... ...|... +..
T Consensus 52 --------------~~~~~~~~Dt~gq~~~~------~~~~~y~~--~~~~~l~~~d~~~~~~~~~~~~~~~~~---l~~ 106 (219)
T COG1100 52 --------------RNIKLQLWDTAGQEEYR------SLRPEYYR--GANGILIVYDSTLRESSDELTEEWLEE---LRE 106 (219)
T ss_pred --------------CEEEEEeecCCCHHHHH------HHHHHHhc--CCCEEEEEEecccchhhhHHHHHHHHH---HHH
Confidence 13468899999998862 12222222 3456666666654 2222 2234322 233
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc--cCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV--SGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~--~g~gv~~l 304 (324)
......|+++|.||+|+............... + ...+................++++||+ ++.||.++
T Consensus 107 ~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~ 176 (219)
T COG1100 107 LAPDDVPILLVGNKIDLFDEQSSSEEILNQLN------R----EVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176 (219)
T ss_pred hCCCCceEEEEecccccccchhHHHHHHhhhh------c----CcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHH
Confidence 33346999999999999876432211111000 0 000000000000011112338999999 99999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
|..+...+..
T Consensus 177 ~~~~~~~~~~ 186 (219)
T COG1100 177 FKELLRKLLE 186 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 221
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.68 E-value=7.5e-16 Score=151.11 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||+.+|.. .+.+.++ .+|.+++|+|+..+...++.. .+......++|+|+|+||+|+.
T Consensus 73 ~~~lnLiDTPGh~dF~~------~v~~sl~--~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 73 TYILNLIDTPGHVDFSY------EVSRSLA--ACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred cEEEEEEECCCcHHHHH------HHHHHHH--HCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence 56789999999988732 2222332 368999999999887665421 1122334689999999999986
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
.... ....+++. + .++ ....+++++||++|.|+++|++.|.+.++.
T Consensus 140 ~a~~-~~v~~ei~---~--------------~lg------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 140 AADP-ERVKQEIE---D--------------VIG------IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cccH-HHHHHHHH---H--------------HhC------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 5321 11111221 0 000 112358999999999999999999998864
No 222
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=1.9e-16 Score=157.24 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=65.5
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D 242 (324)
.+.++.|+||||+++|.. .+... ...+|++++|||+..+..+++.- .+..+...+ .++|+|+||+|
T Consensus 102 ~~~~~~liDtPG~~~f~~------~~~~~--~~~aD~~llVvda~~g~~~~t~e-----~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTR------NMVTG--ASTADLAIILVDARKGVLTQTRR-----HSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHHHHH------HHHHH--HHhCCEEEEEEECCCCccccCHH-----HHHHHHHhCCCeEEEEEEecc
Confidence 366899999999766411 12111 24579999999999887765421 112233334 46788999999
Q ss_pred cCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 243 VAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 243 l~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+++ .+...+...++..+.+.+ .+...+++|+||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~--------------------~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKL--------------------GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHc--------------------CCCCccEEEEecccCCCccc
Confidence 985 222222222222221110 12346799999999999984
No 223
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-16 Score=121.25 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=106.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++.+|+|.-|+|||.|+..+...+|.... |......+++.+ +..+
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadc--------phtigvefgtri----------------------ievs--- 56 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--------PHTIGVEFGTRI----------------------IEVS--- 56 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcC--------CcccceecceeE----------------------EEec---
Confidence 3578999999999999999999988775321 111111222210 0111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
+..++++||||+||++|. .....+.+.+...+.||.|.-+........| +...+.+
T Consensus 57 ---------------gqkiklqiwdtagqerfr------avtrsyyrgaagalmvyditrrstynhlssw---l~dar~l 112 (215)
T KOG0097|consen 57 ---------------GQKIKLQIWDTAGQERFR------AVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDARNL 112 (215)
T ss_pred ---------------CcEEEEEEeecccHHHHH------HHHHHHhccccceeEEEEehhhhhhhhHHHH---Hhhhhcc
Confidence 446789999999999972 2334445555456778888777666666666 3344556
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+..+++++||.|+.....+ ..++.. .++++ .+..++++||++|.||++.|-.
T Consensus 113 tnpnt~i~lignkadle~qrdv--~yeeak--------------~faee---------ngl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 113 TNPNTVIFLIGNKADLESQRDV--TYEEAK--------------EFAEE---------NGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred CCCceEEEEecchhhhhhcccC--cHHHHH--------------HHHhh---------cCeEEEEecccccCcHHHHHHH
Confidence 6677888999999999765432 111111 11111 2467889999999999998877
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
..+.+.
T Consensus 168 ~akkiy 173 (215)
T KOG0097|consen 168 TAKKIY 173 (215)
T ss_pred HHHHHH
Confidence 666554
No 224
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=6.8e-16 Score=145.45 Aligned_cols=106 Identities=17% Similarity=0.291 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 243 (324)
+.++.||||||+++|.. .+...+ ..+|++++|||+..++.+++... +..+...+. ++|+|+||+|+
T Consensus 79 ~~~~~liDtPGh~~f~~------~~~~~~--~~aD~allVVda~~G~~~qt~~~-----~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTR------NMATGA--STADLAVLLVDARKGVLEQTRRH-----SYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CeEEEEEeCCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCCccccHHH-----HHHHHHcCCCcEEEEEEeccc
Confidence 56889999999876521 122211 35799999999999987765321 122333344 57889999999
Q ss_pred CChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 244 AQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 244 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
...+ ...+..+.+..+.+.+ . +...+++++||++|+|+++
T Consensus 146 ~~~~~~~~~~i~~~~~~~~~~~-------------------~-~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 146 VDYDEEVFENIKKDYLAFAEQL-------------------G-FRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHc-------------------C-CCCccEEEeecccCCCCcc
Confidence 8532 1112222222111110 1 1246899999999999986
No 225
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=6.6e-16 Score=145.09 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeE-EEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 243 (324)
+.++.|+||||+.+|.. .+... ...+|++++|||+..+...++ ...+..+...++|++ +++||+|+
T Consensus 74 ~~~i~~iDtPG~~~f~~------~~~~~--~~~aD~~llVVDa~~g~~~qt-----~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 KRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CeEEEEEECCCHHHHHH------HHHhh--hccCCEEEEEEECCCCCchHH-----HHHHHHHHHcCCCEEEEEEeecCC
Confidence 56789999999765411 11111 145799999999998876654 222344556789986 58999999
Q ss_pred CChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCC----------ChHHHHHHHHHH
Q 020549 244 AQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA----------GIEAYFKAVEES 311 (324)
Q Consensus 244 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~----------gv~~l~~~i~~~ 311 (324)
.+.+...+ ...++..+...+ .+ ....+++++||++|. |+..|++.|...
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~-------------------~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKY-------------------DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhc-------------------CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 86433221 122232221111 11 124789999999975 577888888876
Q ss_pred HH
Q 020549 312 AQ 313 (324)
Q Consensus 312 ~~ 313 (324)
++
T Consensus 202 ~~ 203 (396)
T PRK00049 202 IP 203 (396)
T ss_pred CC
Confidence 54
No 226
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.67 E-value=1.2e-15 Score=129.96 Aligned_cols=189 Identities=16% Similarity=0.141 Sum_probs=102.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHH-HHHHH--HHcCCCCCCcccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR-YKEVM--KQFNLGPNGGILTSL 145 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~ 145 (324)
+.+|+|+|++|+|||||++++++...... .+.++..+.... .+ ..... ..-+. ....+..+++.+|..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~-~~~~~~~d~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKY-QLAVITNDIYTQ-------ED-AEFLVKNSALPPERILGVETGGCPHTAI 71 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCC-cEEEEeCCcCCh-------hH-HHHHHHcCCCCcCceehhhcCCCcccee
Confidence 46899999999999999999998754432 344443333210 00 00000 00000 011123445566543
Q ss_pred cccC-hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 146 NLFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~-~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..-. .......... ......++++++|.|..-.. ... . ..++.++.|+|+.++.......
T Consensus 72 ~~~~~~~~~~L~~l~-~~~~~~D~iiIEt~G~~l~~---~~~----~----~l~~~~i~vvD~~~~~~~~~~~------- 132 (199)
T TIGR00101 72 REDASMNLEAVAEME-ARFPPLEMVFIESGGDNLSA---TFS----P----ELADLTIFVIDVAAGDKIPRKG------- 132 (199)
T ss_pred ccCHHHHHHHHHHHH-hcCCCCCEEEEECCCCCccc---ccc----h----hhhCcEEEEEEcchhhhhhhhh-------
Confidence 2111 1111112221 12236899999999942110 000 0 1136789999987654422111
Q ss_pred HHHhhcCCCeEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
..+....-++++||+|+.+. .......+.++ .+.+..+++++||++|+|++
T Consensus 133 --~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi~ 185 (199)
T TIGR00101 133 --GPGITRSDLLVINKIDLAPMVGADLGVMERDAK-------------------------KMRGEKPFIFTNLKTKEGLD 185 (199)
T ss_pred --HhHhhhccEEEEEhhhccccccccHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCHH
Confidence 11223344999999999852 21211122222 33457899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 303 AYFKAVEESA 312 (324)
Q Consensus 303 ~l~~~i~~~~ 312 (324)
+++++|.++.
T Consensus 186 el~~~i~~~~ 195 (199)
T TIGR00101 186 TVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhhc
Confidence 9999998653
No 227
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.3e-16 Score=146.78 Aligned_cols=175 Identities=22% Similarity=0.181 Sum_probs=111.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+.+..|+|+|+||||||||+|+|++....+ |+..+++| ||-+... +.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI------------VSpv~GTT----RDaiea~--------------v~-- 312 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI------------VSPVPGTT----RDAIEAQ--------------VT-- 312 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE------------eCCCCCcc----hhhheeE--------------ee--
Confidence 4567899999999999999999999987764 78888888 6554210 00
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchh-HHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMT-FMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~-~~~~~~~~ 223 (324)
..++.+.|.||+|+.+-.........+.+..++ ..+|++++|||+.++....+ .+...+..
T Consensus 313 -----------------~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~ 375 (531)
T KOG1191|consen 313 -----------------VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILET 375 (531)
T ss_pred -----------------cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHH
Confidence 237899999999998721111122223333333 45799999999977665544 22222322
Q ss_pred HHHHhh------cCCCeEEEeeccccCChH-hHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc-eeeec
Q 020549 224 CSILYK------TRLPLVLAFNKTDVAQHE-FALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVS 294 (324)
Q Consensus 224 ~~~~~~------~~~p~ilv~NK~Dl~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-iv~vS 294 (324)
...... ...|+++|.||+|+..+- .... ...... + ......+ .+++|
T Consensus 376 ~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~---~---------------------~~~~~~~i~~~vs 431 (531)
T KOG1191|consen 376 EGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS---A---------------------EGRSVFPIVVEVS 431 (531)
T ss_pred hccceEEEeccccccceEEEechhhccCccccccCCceeccc---c---------------------ccCcccceEEEee
Confidence 211111 237889999999998762 1110 000000 0 0011234 45599
Q ss_pred cccCCChHHHHHHHHHHHH
Q 020549 295 SVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 295 A~~g~gv~~l~~~i~~~~~ 313 (324)
|++++|++.|...|.+.+.
T Consensus 432 ~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 432 CTTKEGCERLSTALLNIVE 450 (531)
T ss_pred echhhhHHHHHHHHHHHHH
Confidence 9999999999999988654
No 228
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.67 E-value=2.3e-16 Score=135.89 Aligned_cols=202 Identities=18% Similarity=0.279 Sum_probs=112.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC-Cccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTSLN 146 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 146 (324)
+..+|+|.|+||||||||+++|.......+.++.++..||.. .++++.-. -|+++..+....-+.... ..---+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS-p~tGGAlL--GDRiRM~~~~~d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS-PFTGGALL--GDRIRMQELSRDPGVFIRSMATRGSLG 104 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG-GCC---SS----GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC-CCCCCccc--ccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence 567899999999999999999999988888999999999854 34443322 344433322211110000 00000111
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.++......+..+.+ .+++++|++|.|..+.- ..+ ...+|.+++|+-...+-.-+..-..+++
T Consensus 105 Gls~~t~~~v~ll~a--aG~D~IiiETVGvGQsE------~~I-----~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---- 167 (266)
T PF03308_consen 105 GLSRATRDAVRLLDA--AGFDVIIIETVGVGQSE------VDI-----ADMADTVVLVLVPGLGDEIQAIKAGIME---- 167 (266)
T ss_dssp HHHHHHHHHHHHHHH--TT-SEEEEEEESSSTHH------HHH-----HTTSSEEEEEEESSTCCCCCTB-TTHHH----
T ss_pred CccHhHHHHHHHHHH--cCCCEEEEeCCCCCccH------HHH-----HHhcCeEEEEecCCCccHHHHHhhhhhh----
Confidence 244455555555553 37899999999876531 111 1346999999987666555544444442
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
++-|+|+||+|+...+.. ..+++.......... . .| ..|++.+||.+|.||++|++
T Consensus 168 -----iaDi~vVNKaD~~gA~~~---~~~l~~~l~l~~~~~-----------~---~W--~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 168 -----IADIFVVNKADRPGADRT---VRDLRSMLHLLRERE-----------D---GW--RPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp -----H-SEEEEE--SHHHHHHH---HHHHHHHHHHCSTSC-----------T---SB----EEEEEBTTTTBSHHHHHH
T ss_pred -----hccEEEEeCCChHHHHHH---HHHHHHHHhhccccc-----------c---CC--CCCEEEEEeCCCCCHHHHHH
Confidence 345999999996544432 222222111100000 0 11 25899999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.|.++..
T Consensus 224 ~i~~~~~ 230 (266)
T PF03308_consen 224 AIDEHRD 230 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=5.6e-16 Score=145.70 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeE-EEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 243 (324)
+..+.||||||+++|.. .+...+ ..+|++++|+|+.++...++. ..+..+...++|.+ +|+||+|+
T Consensus 74 ~~~~~liDtpGh~~f~~------~~~~~~--~~~D~~ilVvda~~g~~~qt~-----e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVSATDGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CEEEEEEECCchHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEeccc
Confidence 55789999999877521 121111 356999999999988766652 22234555688876 58999999
Q ss_pred CChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCC
Q 020549 244 AQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGA 299 (324)
Q Consensus 244 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~ 299 (324)
.+.+...+ ..+++..+.+.. .+. ..++++++||++|.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~-------------------~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEY-------------------DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhc-------------------CCCccCccEEECcccccc
Confidence 87543222 112233222111 011 12789999999985
No 230
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.67 E-value=7.3e-16 Score=150.76 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=79.1
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+.+.++.||||||+.+|.. .+...+ ..+|.+++|||+.++...++. ..+..+...++|+|+|+||+|
T Consensus 61 ~~~~kinlIDTPGh~DF~~------ev~~~l--~~aD~alLVVDa~~G~~~qT~-----~~l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 61 YNGTKINIVDTPGHADFGG------EVERVL--GMVDGVLLLVDASEGPMPQTR-----FVLKKALELGLKPIVVINKID 127 (594)
T ss_pred ECCEEEEEEECCCHHHHHH------HHHHHH--HhCCEEEEEEeCCCCCcHHHH-----HHHHHHHHCCCCEEEEEECCC
Confidence 3467899999999877621 222222 236999999999988766542 122445567899999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC----------ChHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESA 312 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~----------gv~~l~~~i~~~~ 312 (324)
+.... ..+...++..+...+... .-....+++++||++|. |++.||+.|.+.+
T Consensus 128 ~~~a~-~~~v~~ei~~l~~~~g~~----------------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 128 RPSAR-PDEVVDEVFDLFAELGAD----------------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CCCcC-HHHHHHHHHHHHHhhccc----------------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 87532 112223333222111000 00013689999999996 8999999999988
Q ss_pred HH
Q 020549 313 QE 314 (324)
Q Consensus 313 ~~ 314 (324)
|.
T Consensus 191 P~ 192 (594)
T TIGR01394 191 PA 192 (594)
T ss_pred CC
Confidence 64
No 231
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.67 E-value=1.9e-16 Score=134.21 Aligned_cols=164 Identities=13% Similarity=0.168 Sum_probs=108.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|.+|+|||+|+.++.+..|...+.+++- +.+.....++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie------d~y~k~~~v~----------------------------- 47 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE------DSYRKELTVD----------------------------- 47 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc------ccceEEEEEC-----------------------------
Confidence 46899999999999999999999988876544331 1111111110
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
+....+.|+||+|++++. .....+++...+-++||.|+.+.+++....+...+ .+...
T Consensus 48 --------------~~~~~l~ilDt~g~~~~~------~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I--~r~~~ 105 (196)
T KOG0395|consen 48 --------------GEVCMLEILDTAGQEEFS------AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQI--LRVKG 105 (196)
T ss_pred --------------CEEEEEEEEcCCCcccCh------HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHH--HHhhC
Confidence 224567899999988762 12223344455568899999988887776554433 23333
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
...+|+++|+||+|+.....+. .++-..+. . .| .++++++||+...+|+++|..|
T Consensus 106 ~~~~PivlVGNK~Dl~~~R~V~--~eeg~~la--------------~-------~~--~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 106 RDDVPIILVGNKCDLERERQVS--EEEGKALA--------------R-------SW--GCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred cCCCCEEEEEEcccchhccccC--HHHHHHHH--------------H-------hc--CCcEEEeeccCCcCHHHHHHHH
Confidence 4568999999999998642210 01111111 1 11 3569999999999999999999
Q ss_pred HHHHHH
Q 020549 309 EESAQE 314 (324)
Q Consensus 309 ~~~~~~ 314 (324)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 997764
No 232
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=6.2e-16 Score=124.16 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.+||+||+....... ... ...+|.+++|+|........................+.|+++|+||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~------~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR------RLY--YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHH------HHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 4578999999976642111 111 13468999999997644322211000112233455789999999999998
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
......... ..... ......+++++||+++.|++++++.|.
T Consensus 116 ~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 116 EERVVSEEE-LAEQL-----------------------AKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccchHHHH-HHHHH-----------------------HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 654322111 00000 112457899999999999999999875
No 233
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-16 Score=126.57 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=112.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
-...++++|+|..++||||++.+++...|..++.-+| +++ +
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI-----gvd-------f--------------------------- 57 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI-----GVD-------F--------------------------- 57 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhcccccccccccc-----chh-------h---------------------------
Confidence 3467899999999999999999999988776554332 110 0
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
....+........+.+|||+||++| .++...+.+.+.+.++||.-..+.+++....|.+...
T Consensus 58 ---------lerqi~v~~Edvr~mlWdtagqeEf------DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~--- 119 (246)
T KOG4252|consen 58 ---------LERQIKVLIEDVRSMLWDTAGQEEF------DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQ--- 119 (246)
T ss_pred ---------hhHHHHhhHHHHHHHHHHhccchhH------HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHH---
Confidence 0011112233456679999999987 2234445566667788888888888876666654432
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....+|.++|-||+|++++..+.. ...+.+.+. ...+++.+|++...||..+|
T Consensus 120 -~e~~~IPtV~vqNKIDlveds~~~~--~evE~lak~-----------------------l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 120 -KETERIPTVFVQNKIDLVEDSQMDK--GEVEGLAKK-----------------------LHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred -HHhccCCeEEeeccchhhHhhhcch--HHHHHHHHH-----------------------hhhhhhhhhhhhhhhhHHHH
Confidence 2235799999999999998764311 112212111 13456779999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
..|++.+..
T Consensus 174 ~YLaeK~~q 182 (246)
T KOG4252|consen 174 AYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHH
Confidence 999987654
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.65 E-value=1.1e-15 Score=145.86 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
+..+.||||||+++|.. .+...+ ..+|++++|||+..+...++ ..++..+...++| +|+|+||+|+
T Consensus 143 ~~~i~liDtPGh~~f~~------~~~~g~--~~aD~ailVVda~~G~~~qt-----~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 143 NRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVSGADGPMPQT-----KEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CcEEEEEECCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCeEEEEEecccc
Confidence 56889999999877522 222222 34799999999999877665 2223445567888 6789999999
Q ss_pred CChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC
Q 020549 244 AQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG 300 (324)
Q Consensus 244 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g 300 (324)
++.+...+.. +++..+.+.+ .|. ...+++++||.+|.+
T Consensus 210 ~~~~~~~~~i~~~i~~~l~~~-------------------g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 210 VDDEELLELVELEVRELLSSY-------------------EFPGDDIPIISGSALLALE 249 (478)
T ss_pred cCHHHHHHHHHHHHHHHHHhc-------------------CCCcCcceEEEEEcccccc
Confidence 8754332222 2333222211 111 257899999999853
No 235
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.65 E-value=2e-15 Score=130.36 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||+.++.. .....+ ..+|++++|+|+.++..... ...+......++|+++|+||+|++
T Consensus 70 ~~~i~iiDtpG~~~f~~------~~~~~~--~~aD~~llVvD~~~~~~~~~-----~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMD------EVAAAL--RLSDGVVLVVDVVEGVTSNT-----ERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHH------HHHHHH--HhCCEEEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcccC
Confidence 46789999999887621 111222 24689999999987764432 111123334569999999999986
No 236
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.65 E-value=3.5e-15 Score=141.85 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC---CCchhHHHhHHHHHHHHhhcC-CCeEEEee
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS---ANPMTFMSNMLYACSILYKTR-LPLVLAFN 239 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~---~~~~~~~~~~~~~~~~~~~~~-~p~ilv~N 239 (324)
.+..+.||||||+.+|.. .+... ...+|++++|+|+..+ ...+..+ .+ ......+ .|+|+|+|
T Consensus 83 ~~~~i~iiDtpGh~~f~~------~~~~~--~~~aD~~ilVvDa~~~~~~~~~~t~~--~~---~~~~~~~~~~iIVviN 149 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIK------NMITG--ASQADAAVLVVAVGDGEFEVQPQTRE--HA---FLARTLGINQLIVAIN 149 (426)
T ss_pred CCeEEEEEECCCHHHHHH------HHHhh--hhhCCEEEEEEECCCCCcccCCchHH--HH---HHHHHcCCCeEEEEEE
Confidence 367889999999766521 11111 1347999999999887 3333221 11 1222233 46889999
Q ss_pred ccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549 240 KTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 240 K~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~ 303 (324)
|+|+.+ .+......+++..+.+.. .+. ...+++++||++|.|+++
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~~-------------------g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKKV-------------------GYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHHc-------------------CCCcccceEEEeeccccccccc
Confidence 999974 222222223333222111 011 236899999999999986
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=2.8e-15 Score=144.84 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+..+.||||||+.+|.. .....+ ..+|.+|+|+|+..+...+. ...+......++|+++++||+|+
T Consensus 77 ~~~~inliDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~~t-----~~l~~~~~~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSE------DTYRTL--TAVDSALMVIDAAKGVEPQT-----RKLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred CCEEEEEEECCCchhhHH------HHHHHH--HHCCEEEEEEecCCCCCHHH-----HHHHHHHHhcCCCEEEEEECCcc
Confidence 367899999999877621 122222 23699999999998875543 11223445578999999999998
Q ss_pred CChH
Q 020549 244 AQHE 247 (324)
Q Consensus 244 ~~~~ 247 (324)
....
T Consensus 144 ~~a~ 147 (526)
T PRK00741 144 DGRE 147 (526)
T ss_pred cccC
Confidence 7643
No 238
>PRK10218 GTP-binding protein; Provisional
Probab=99.64 E-value=3.6e-15 Score=145.80 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+..+.||||||+.+|.. .+...+ ..+|.+++|+|+.++...++.. .+..+...++|.++|+||+|+
T Consensus 66 ~~~~inliDTPG~~df~~------~v~~~l--~~aDg~ILVVDa~~G~~~qt~~-----~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGG------EVERVM--SMVDSVLLVVDAFDGPMPQTRF-----VTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHH------HHHHHH--HhCCEEEEEEecccCccHHHHH-----HHHHHHHcCCCEEEEEECcCC
Confidence 467899999999988721 122222 3469999999999887655411 123445578999999999998
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC----------ChHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~----------gv~~l~~~i~~~~~ 313 (324)
.... ......++..+...+ ... ......|++++||++|. |+..|++.|.+.+|
T Consensus 133 ~~a~-~~~vl~ei~~l~~~l--------------~~~--~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 133 PGAR-PDWVVDQVFDLFVNL--------------DAT--DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCc-hhHHHHHHHHHHhcc--------------Ccc--ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 7532 112223333221111 000 00123789999999998 68999999999886
Q ss_pred H
Q 020549 314 E 314 (324)
Q Consensus 314 ~ 314 (324)
.
T Consensus 196 ~ 196 (607)
T PRK10218 196 A 196 (607)
T ss_pred C
Confidence 4
No 239
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=5.3e-15 Score=148.24 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=50.0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+.++.||||||+.++.. .....+ ..+|++++|+|+..+...++. ..+..+...++|+++|+||+|+
T Consensus 73 ~~~~i~liDTPG~~~~~~------~~~~~l--~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~ivviNK~D~ 139 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTV------EVERSL--RVLDGAVAVLDAVGGVQPQSE-----TVWRQANRYEVPRIAFVNKMDK 139 (689)
T ss_pred CCeEEEEEECCCCcchhH------HHHHHH--HHhCEEEEEEeCCCCCChhHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence 467899999999987621 122222 235999999999988766542 1223455678999999999999
Q ss_pred CChH
Q 020549 244 AQHE 247 (324)
Q Consensus 244 ~~~~ 247 (324)
....
T Consensus 140 ~~~~ 143 (689)
T TIGR00484 140 TGAN 143 (689)
T ss_pred CCCC
Confidence 8643
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=1.8e-15 Score=143.77 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC-------chhHHHhHHHHHHHHhhcCCCe-E
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLPL-V 235 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~-i 235 (324)
.+..+.|+||||+.+|.. .+... ...+|++++|||+..+.. .++ ..++..+...++|. |
T Consensus 83 ~~~~i~lIDtPGh~~f~~------~~~~g--~~~aD~ailVVda~~G~~e~~~~~~~qT-----~eh~~~~~~~gi~~ii 149 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIK------NMITG--TSQADVAILVVASTAGEFEAGISKDGQT-----REHALLAFTLGVKQMI 149 (446)
T ss_pred CCeEEEEEECCChHHHHH------HHHHh--hhhcCEEEEEEEcCCCceecccCCCccH-----HHHHHHHHHcCCCeEE
Confidence 367889999999877521 11111 145799999999998863 232 22334566678885 6
Q ss_pred EEeeccccCC----hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549 236 LAFNKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 236 lv~NK~Dl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~ 303 (324)
+|+||+|+.. .++..+..+++..+...+ .+. ...++||+||++|+|+.+
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~-------------------g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKEVSAYLKKV-------------------GYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHHHHHHHHhc-------------------CCCcccceEEEeecccCCCccc
Confidence 8999999532 233333333333222111 111 247899999999999964
No 241
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.63 E-value=3.7e-15 Score=135.19 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH-HHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-AVE 309 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~-~i~ 309 (324)
.+|+|+|+||+|+...... .+.+. ....+.+++++||+.+.|+++|.+ .|.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~---~~~l~-------------------------~~~~~~~iI~iSA~~e~~L~~L~~~~i~ 265 (318)
T cd01899 214 SKPMVIAANKADIPDAENN---ISKLR-------------------------LKYPDEIVVPTSAEAELALRRAAKQGLI 265 (318)
T ss_pred CCcEEEEEEHHHccChHHH---HHHHH-------------------------hhCCCCeEEEEeCcccccHHHHHHhhHH
Confidence 4799999999998654422 11111 112356899999999999999998 699
Q ss_pred HHHHHHHHh
Q 020549 310 ESAQEFMET 318 (324)
Q Consensus 310 ~~~~~~~~~ 318 (324)
+++|++++.
T Consensus 266 ~~lPe~~~f 274 (318)
T cd01899 266 KYDPGDSDF 274 (318)
T ss_pred HhCCCCCCc
Confidence 999876644
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.63 E-value=8.7e-15 Score=126.48 Aligned_cols=67 Identities=25% Similarity=0.282 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||+++|.. .+...+ ..+|.+++|+|+.++...+. .. .+......++|+|+|+||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~------~~~~~l--~~aD~~ilVvD~~~g~~~~t--~~---~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSS------EVTAAL--RLCDGALVVVDAVEGVCVQT--ET---VLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHH------HHHHHH--HhcCeeEEEEECCCCCCHHH--HH---HHHHHHHcCCCEEEEEECCCcc
Confidence 56788999999988622 222222 33689999999998876544 11 2233445678999999999986
No 243
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.63 E-value=1e-14 Score=129.25 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=105.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGI 141 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~ 141 (324)
......|.|+|+||||||||++++++...... .+.++..|.+.. .| . +.+...+. ..+||.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~-~~~VI~gD~~t~-------~D---a----~rI~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSV-PCAVIEGDQQTV-------ND---A----ARIRATGTPAIQVNTGKG 165 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCC-CEEEECCCcCcH-------HH---H----HHHHhcCCcEEEecCCCC
Confidence 34678899999999999999999998765443 344443333211 11 1 11222222 234566
Q ss_pred cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
|+. ....+...+..+. ....+++|+++.|. ..+... .++. +.-+.+++..++........
T Consensus 166 Chl---~a~mv~~Al~~L~--~~~~d~liIEnvGnLvcPa~f-dlge-----------~~~v~vlsV~eg~dkplKyp-- 226 (290)
T PRK10463 166 CHL---DAQMIADAAPRLP--LDDNGILFIENVGNLVCPASF-DLGE-----------KHKVAVLSVTEGEDKPLKYP-- 226 (290)
T ss_pred CcC---cHHHHHHHHHHHh--hcCCcEEEEECCCCccCCCcc-chhh-----------ceeEEEEECccccccchhcc--
Confidence 653 2233344444444 34679999999995 232110 1111 23346666666643211111
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g 298 (324)
.....+-++|+||+|+++. .......+.++ ...++.+++++||++|
T Consensus 227 -------~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr-------------------------~lnp~a~I~~vSA~tG 274 (290)
T PRK10463 227 -------HMFAAASLMLLNKVDLLPYLNFDVEKCIACAR-------------------------EVNPEIEIILISATSG 274 (290)
T ss_pred -------chhhcCcEEEEEhHHcCcccHHHHHHHHHHHH-------------------------hhCCCCcEEEEECCCC
Confidence 1134677999999999863 22222222222 3456789999999999
Q ss_pred CChHHHHHHHHHH
Q 020549 299 AGIEAYFKAVEES 311 (324)
Q Consensus 299 ~gv~~l~~~i~~~ 311 (324)
+|++++.++|...
T Consensus 275 eGld~L~~~L~~~ 287 (290)
T PRK10463 275 EGMDQWLNWLETQ 287 (290)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998763
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1e-15 Score=142.21 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=110.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+-..++||-+...|||||..+|+......... ..-..+|+.+.+....||.....
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~------------------------~~q~q~LDkl~vERERGITIkaQ 113 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN------------------------IGQEQVLDKLQVERERGITIKAQ 113 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCC------------------------CchhhhhhhhhhhhhcCcEEEee
Confidence 344568999999999999999999874422100 00012223333333334332100
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.-+-. + . .+..+.+.++||||+.+|.. ... +.+ +.|+.+++||||.+|.+.++.. ....
T Consensus 114 tasif--y-----~-~~~~ylLNLIDTPGHvDFs~--EVs----Rsl--aac~G~lLvVDA~qGvqAQT~a-----nf~l 172 (650)
T KOG0462|consen 114 TASIF--Y-----K-DGQSYLLNLIDTPGHVDFSG--EVS----RSL--AACDGALLVVDASQGVQAQTVA-----NFYL 172 (650)
T ss_pred eeEEE--E-----E-cCCceEEEeecCCCcccccc--eeh----ehh--hhcCceEEEEEcCcCchHHHHH-----HHHH
Confidence 00000 0 0 02347889999999999832 222 222 3368999999999999888622 1123
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+..+|.|+||+|+...+- .....++..+- -.+..+++.+|||+|.|++++++
T Consensus 173 Afe~~L~iIpVlNKIDlp~adp-e~V~~q~~~lF-----------------------~~~~~~~i~vSAK~G~~v~~lL~ 228 (650)
T KOG0462|consen 173 AFEAGLAIIPVLNKIDLPSADP-ERVENQLFELF-----------------------DIPPAEVIYVSAKTGLNVEELLE 228 (650)
T ss_pred HHHcCCeEEEeeeccCCCCCCH-HHHHHHHHHHh-----------------------cCCccceEEEEeccCccHHHHHH
Confidence 4457889999999999987531 11111221110 02346899999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
+|++.+|.
T Consensus 229 AII~rVPp 236 (650)
T KOG0462|consen 229 AIIRRVPP 236 (650)
T ss_pred HHHhhCCC
Confidence 99999864
No 245
>PRK00007 elongation factor G; Reviewed
Probab=99.63 E-value=3.3e-15 Score=149.57 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=51.7
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+..+.|+||||+.+|.. .+...+ ..+|++|+|||+..+...++. ..+..+...++|+|+++||+|+
T Consensus 73 ~~~~~~liDTPG~~~f~~------ev~~al--~~~D~~vlVvda~~g~~~qt~-----~~~~~~~~~~~p~iv~vNK~D~ 139 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVGGVEPQSE-----TVWRQADKYKVPRIAFVNKMDR 139 (693)
T ss_pred CCeEEEEEeCCCcHHHHH------HHHHHH--HHcCEEEEEEECCCCcchhhH-----HHHHHHHHcCCCEEEEEECCCC
Confidence 467899999999877521 122222 235899999999999877662 2234566778999999999999
Q ss_pred CChH
Q 020549 244 AQHE 247 (324)
Q Consensus 244 ~~~~ 247 (324)
....
T Consensus 140 ~~~~ 143 (693)
T PRK00007 140 TGAD 143 (693)
T ss_pred CCCC
Confidence 8643
No 246
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.63 E-value=1e-14 Score=125.32 Aligned_cols=182 Identities=14% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..+.|+++|++|+|||||+++++..... ...+.++..++.. .+| ...+...-...-...+|++||..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~-------~~D---~~~~~~~~~~~~~l~~gcic~~~-- 87 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVIT-------KFD---AERLRKYGAPAIQINTGKECHLD-- 87 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCC-------ccc---HHHHHHcCCcEEEEcCCCcccCC--
Confidence 4678999999999999999999986432 2355555444421 111 11111100012223456676521
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
...+...+..+. ..+++++|++|.|. .... .. ....+..+.++|...+..... ..
T Consensus 88 -~~~~~~~l~~~~--~~~~d~IiIEt~G~l~~~~---~~---------~~~~~~~i~Vvd~~~~d~~~~---------~~ 143 (207)
T TIGR00073 88 -AHMVAHALEDLP--LDDIDLLFIENVGNLVCPA---DF---------DLGEHMRVVLLSVTEGDDKPL---------KY 143 (207)
T ss_pred -hHHHHHHHHHhc--cCCCCEEEEecCCCcCCCc---cc---------ccccCeEEEEEecCcccchhh---------hh
Confidence 111212222221 23679999999992 1110 00 011245567788765432211 11
Q ss_pred HhhcCCCeEEEeeccccCChHh--HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......|.++|+||+|+.+... .....+.++ ...+..+++++||++|.|++++
T Consensus 144 ~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~-------------------------~~~~~~~i~~~Sa~~g~gv~~l 198 (207)
T TIGR00073 144 PGMFKEADLIVINKADLAEAVGFDVEKMKADAK-------------------------KINPEAEIILMSLKTGEGLDEW 198 (207)
T ss_pred HhHHhhCCEEEEEHHHccccchhhHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCHHHH
Confidence 1224578899999999986421 111211111 2235689999999999999999
Q ss_pred HHHHHHH
Q 020549 305 FKAVEES 311 (324)
Q Consensus 305 ~~~i~~~ 311 (324)
++.+.++
T Consensus 199 ~~~i~~~ 205 (207)
T TIGR00073 199 LEFLEGQ 205 (207)
T ss_pred HHHHHHh
Confidence 9999875
No 247
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=4.7e-15 Score=126.93 Aligned_cols=184 Identities=17% Similarity=0.318 Sum_probs=95.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
.|+++|++|||||||+++|.+..+........ .+. +... +..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-------------~~~---------------------~~~~----~~~ 43 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-------------PNV---------------------ATFI----LNS 43 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-------------ecc---------------------eEEE----eec
Confidence 58999999999999999999875543211100 000 0000 000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HHH--H
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI--L 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~~--~ 227 (324)
......+.||||||+.++ + ..+...++.. .+.+|||+|+.............+.. +.. .
T Consensus 44 -----------~~~~~~~~l~D~pG~~~~--~----~~~~~~~~~~-~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~ 105 (203)
T cd04105 44 -----------EGKGKKFRLVDVPGHPKL--R----DKLLETLKNS-AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEK 105 (203)
T ss_pred -----------CCCCceEEEEECCCCHHH--H----HHHHHHHhcc-CCEEEEEEECccchhHHHHHHHHHHHHHHHHhh
Confidence 012567899999998765 1 1222333322 38999999998753222221111111 111 1
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHH----hHHHHHHHHhcCc-------cchhhHHHHHHH--hHHHHhccCceeeec
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQ----DFEVFQAAISSDH-------SYTSTLTNSLSL--ALDEFYKNLKSVGVS 294 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~----~~~~l~~~~~~~~-------~~~~~l~~~~~~--~~~~~~~~~~iv~vS 294 (324)
...++|+++|+||+|+........+.+ ++..+...-.... .....+...-+. .+......+.++++|
T Consensus 106 ~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s 185 (203)
T cd04105 106 VKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGS 185 (203)
T ss_pred ccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeE
Confidence 225799999999999876432222222 2222222111100 000000000000 011111246889999
Q ss_pred cccCC-ChHHHHHHHHH
Q 020549 295 SVSGA-GIEAYFKAVEE 310 (324)
Q Consensus 295 A~~g~-gv~~l~~~i~~ 310 (324)
++.+. |++.+.++|.+
T Consensus 186 ~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 186 VKVDGGGIDGWEEWIDE 202 (203)
T ss_pred EecCCCChHhHHHHHhh
Confidence 99876 69998888764
No 248
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=5.6e-15 Score=148.05 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=50.5
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+.++.||||||+.+|.. .+...+ ..+|++++|||+..+...++. ..+..+...++|+|+++||+|+
T Consensus 71 ~~~~i~liDTPG~~~f~~------e~~~al--~~~D~~ilVvDa~~g~~~qt~-----~i~~~~~~~~~p~iv~iNK~D~ 137 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVSGVEPQSE-----TVWRQADKYGVPRIVFVNKMDR 137 (691)
T ss_pred CCEEEEEEcCCCHHHHHH------HHHHHH--HHhCeEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence 467899999999877521 222222 235999999999998876652 2234455678999999999999
Q ss_pred CCh
Q 020549 244 AQH 246 (324)
Q Consensus 244 ~~~ 246 (324)
...
T Consensus 138 ~~~ 140 (691)
T PRK12739 138 IGA 140 (691)
T ss_pred CCC
Confidence 864
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.61 E-value=1.4e-14 Score=145.42 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=48.7
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+..+.||||||+.+|.. .....+ ..+|++++|+|+..+...... ..+..+...++|+++|+||+|+
T Consensus 71 ~~~~i~liDtPG~~df~~------~~~~~l--~~aD~~ilVvd~~~~~~~~~~-----~~~~~~~~~~~p~iiviNK~D~ 137 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTG------EVERSL--RVLDGAVVVFDAVTGVQPQTE-----TVWRQADRYGIPRLIFINKMDR 137 (687)
T ss_pred CCEEEEEEECCCcHHHHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHhcCCCEEEEEECCCC
Confidence 367899999999877621 122222 235899999999887655431 1223445568999999999999
Q ss_pred CCh
Q 020549 244 AQH 246 (324)
Q Consensus 244 ~~~ 246 (324)
...
T Consensus 138 ~~~ 140 (687)
T PRK13351 138 VGA 140 (687)
T ss_pred CCC
Confidence 865
No 250
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.2e-15 Score=131.81 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
..+.|+|.||++- .|...+.. +.-|.+++||++.+.+... +..+.+..+..+.- +.+|+|-||+|++
T Consensus 86 R~VSfVDaPGHe~---------LMATMLsGAAlMDgAlLvIaANEpcPQP-QT~EHl~AleIigi--k~iiIvQNKIDlV 153 (415)
T COG5257 86 RRVSFVDAPGHET---------LMATMLSGAALMDGALLVIAANEPCPQP-QTREHLMALEIIGI--KNIIIVQNKIDLV 153 (415)
T ss_pred EEEEEeeCCchHH---------HHHHHhcchhhhcceEEEEecCCCCCCC-chHHHHHHHhhhcc--ceEEEEeccccee
Confidence 3567999999533 22223322 3458999999998876432 23344444444322 4578999999999
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~ 315 (324)
+.++..+.++++..+.+. .+.++.||+|+||..+.||+.|+++|.+.++..
T Consensus 154 ~~E~AlE~y~qIk~FvkG--------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 154 SRERALENYEQIKEFVKG--------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred cHHHHHHHHHHHHHHhcc--------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 999887777777765543 345678999999999999999999999998753
No 251
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.60 E-value=6.9e-14 Score=126.76 Aligned_cols=201 Identities=19% Similarity=0.213 Sum_probs=110.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc-
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS- 144 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 144 (324)
...+..|+|+|++|+|||||++.|.......+..+.++..|+.... +.+.-. .++.+..+ ....+ +..+.+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~-~~~~~~--~~~~~~~~----~~~~~-~~~~~~~ 102 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF-TGGSIL--GDRTRMQR----LATDP-GAFIRSM 102 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-chhhhc--ccchhhhh----cccCC-Cceeeec
Confidence 3457889999999999999999999987777888888888864321 111100 11111111 11001 011111
Q ss_pred -----ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHh
Q 020549 145 -----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN 219 (324)
Q Consensus 145 -----~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~ 219 (324)
...........+..+. ..+++++|+||||..... . .+. ..+|.++++.+...+ ......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~--~~g~D~viidT~G~~~~e----~--~i~-----~~aD~i~vv~~~~~~-~el~~~-- 166 (300)
T TIGR00750 103 PTRGHLGGLSQATRELILLLD--AAGYDVIIVETVGVGQSE----V--DIA-----NMADTFVVVTIPGTG-DDLQGI-- 166 (300)
T ss_pred CccccccchhHHHHHHHHHHH--hCCCCEEEEeCCCCchhh----h--HHH-----HhhceEEEEecCCcc-HHHHHH--
Confidence 1112223444444444 348999999999965421 0 111 224777777544322 111111
Q ss_pred HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccC
Q 020549 220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSG 298 (324)
Q Consensus 220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g 298 (324)
. .. -.++|.++|+||+|+............+..-...+ ...... ..+++++||++|
T Consensus 167 -~---~~--l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l-----------------~~~~~~~~~~v~~iSA~~g 223 (300)
T TIGR00750 167 -K---AG--LMEIADIYVVNKADGEGATNVTIARLMLALALEEI-----------------RRREDGWRPPVLTTSAVEG 223 (300)
T ss_pred -H---HH--HhhhccEEEEEcccccchhHHHHHHHHHHHHHhhc-----------------cccccCCCCCEEEEEccCC
Confidence 1 11 14688899999999987643211111111000000 000001 146999999999
Q ss_pred CChHHHHHHHHHHHH
Q 020549 299 AGIEAYFKAVEESAQ 313 (324)
Q Consensus 299 ~gv~~l~~~i~~~~~ 313 (324)
.|+++|++.|.+...
T Consensus 224 ~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 224 RGIDELWDAIEEHKT 238 (300)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988754
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=2.8e-14 Score=137.91 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+..+.||||||+.+|.. ...+.+ ..+|++|+|+|+..++..+... .+..+...++|+++++||+|+
T Consensus 78 ~~~~inliDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~~t~~-----l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSE------DTYRTL--TAVDNCLMVIDAAKGVETRTRK-----LMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred CCeEEEEEECCChhhHHH------HHHHHH--HhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEEEEECccc
Confidence 467899999999876521 112222 2369999999999887655311 113344467999999999998
Q ss_pred CC
Q 020549 244 AQ 245 (324)
Q Consensus 244 ~~ 245 (324)
..
T Consensus 145 ~~ 146 (527)
T TIGR00503 145 DI 146 (527)
T ss_pred cC
Confidence 64
No 253
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=2.6e-14 Score=133.50 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=47.3
Q ss_pred CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH-HHHHHH
Q 020549 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA-YFKAVE 309 (324)
Q Consensus 231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~-l~~~i~ 309 (324)
.+|+|+|+||+|+..... ....+. ++ ++..++++||+.+.+++. +.+.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~---~l~~i~-------------------------~~-~~~~vvpISA~~e~~l~~~l~~~i~ 267 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE---NIERLK-------------------------EE-KYYIVVPTSAEAELALRRAAKAGLI 267 (396)
T ss_pred CCCEEEEEEchhcccchH---HHHHHH-------------------------hc-CCCcEEEEcchhhhhHHHHHHHhHH
Confidence 489999999999764321 111111 22 457799999999999999 899999
Q ss_pred HHHHHHHHhhhcc
Q 020549 310 ESAQEFMETYKYC 322 (324)
Q Consensus 310 ~~~~~~~~~~~~~ 322 (324)
+++|..++.|+.+
T Consensus 268 ~~lp~~p~~~~~d 280 (396)
T PRK09602 268 DYIPGDSDFEILG 280 (396)
T ss_pred hhCCCCCccCccc
Confidence 9999888877664
No 254
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.58 E-value=1.5e-15 Score=126.43 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=112.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+++|+|+.++|||+|+..+....|+..+.++++.+-... ..++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~------v~V~---------------------------- 48 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN------VTVD---------------------------- 48 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE------EEec----------------------------
Confidence 357899999999999999999999999999998886433221 1110
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYACSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~~ 226 (324)
.+..+.+-+|||+||+++..-+.+ .+..+..-+++|.|+...++... ..|..++. .
T Consensus 49 --------------dg~~v~L~LwDTAGqedYDrlRpl------sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~---~ 105 (198)
T KOG0393|consen 49 --------------DGKPVELGLWDTAGQEDYDRLRPL------SYPQTDVFLLCFSVVSPESFENVKSKWIPEIK---H 105 (198)
T ss_pred --------------CCCEEEEeeeecCCCccccccccc------CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHH---h
Confidence 022456789999999997221111 11122223455667777777654 46655442 2
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHh--cCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAIS--SDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
...+.|+|+|++|.||.......+. +...-. -....+..+++++ +...++++||++..|+.++
T Consensus 106 -~cp~vpiiLVGtk~DLr~d~~~~~~------l~~~~~~~Vt~~~g~~lA~~i--------ga~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 106 -HCPNVPIILVGTKADLRDDPSTLEK------LQRQGLEPVTYEQGLELAKEI--------GAVKYLECSALTQKGVKEV 170 (198)
T ss_pred -hCCCCCEEEEeehHHhhhCHHHHHH------HHhccCCcccHHHHHHHHHHh--------CcceeeeehhhhhCCcHHH
Confidence 2268999999999999854311111 111000 0112234444444 3478999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|+.........
T Consensus 171 F~~a~~~~l~~ 181 (198)
T KOG0393|consen 171 FDEAIRAALRP 181 (198)
T ss_pred HHHHHHHHhcc
Confidence 99998877543
No 255
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.57 E-value=5.2e-14 Score=111.66 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=99.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..+|.|+|..||||||++++|.+..... + ..+-.+.+++..
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~------------i---~pt~gf~Iktl~---------------------- 56 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT------------I---SPTLGFQIKTLE---------------------- 56 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc------------c---CCccceeeEEEE----------------------
Confidence 346789999999999999999998874221 0 001011111100
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
...+.+.+||..||.... ..-..++. ..|.+|||||.++...-+......-..+.-
T Consensus 57 ----------------~~~~~L~iwDvGGq~~lr------~~W~nYfe--stdglIwvvDssD~~r~~e~~~~L~~lL~e 112 (185)
T KOG0073|consen 57 ----------------YKGYTLNIWDVGGQKTLR------SYWKNYFE--STDGLIWVVDSSDRMRMQECKQELTELLVE 112 (185)
T ss_pred ----------------ecceEEEEEEcCCcchhH------HHHHHhhh--ccCeEEEEEECchHHHHHHHHHHHHHHHhh
Confidence 347789999999986541 11112222 248999999996644332222211111222
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHH--HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWM--QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
-.-.+.|++++.||.|+...=....+. -.+.++.+ ....+++-|||.+|+++.+-
T Consensus 113 erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k-----------------------s~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 113 ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK-----------------------SHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc-----------------------ccCceEEEEeccccccHHHH
Confidence 223678999999999998432111111 12221111 12478999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
+++|...+.+
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 256
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.57 E-value=1.7e-14 Score=137.05 Aligned_cols=113 Identities=10% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-hhHH-HhHHHHHHHHhhcCCC-eEEEeec
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFM-SNMLYACSILYKTRLP-LVLAFNK 240 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-~~~~-~~~~~~~~~~~~~~~p-~ilv~NK 240 (324)
.+..+.|+||||+.+|.. .+...+ ..+|.+++|||+..+... .-.| .....++..+...++| +|+|+||
T Consensus 83 ~~~~i~liDtPGh~df~~------~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIK------NMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHH------HHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence 356889999999888622 122111 357999999999886321 0000 0112233445567886 5779999
Q ss_pred cccCCh----HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549 241 TDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 241 ~Dl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~ 303 (324)
+|+... .+..+..+++..+.+.+ .+. ...+++|+||++|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~-------------------g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKV-------------------GYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHc-------------------CCCcccceEEEEeccccccccc
Confidence 998732 22222333333222211 111 236899999999999853
No 257
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=112.37 Aligned_cols=165 Identities=20% Similarity=0.232 Sum_probs=99.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc---ccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL---PFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (324)
-...+|+|+|+.|+||||++++++......- ...-+..+.. +.+...|+ |.+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t-----~~~~~~~s~k~kr~tTva~D~-------------------g~~~ 63 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVIT-----EADASSVSGKGKRPTTVAMDF-------------------GSIE 63 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccccee-----eccccccccccccceeEeecc-------------------cceE
Confidence 4567899999999999999999988753210 0000000000 01111111 0000
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
...+..+.|+|||||.+|.+ +...+. ..++.+|++||++....... ...
T Consensus 64 ------------------~~~~~~v~LfgtPGq~RF~f-------m~~~l~-~ga~gaivlVDss~~~~~~a-----~~i 112 (187)
T COG2229 64 ------------------LDEDTGVHLFGTPGQERFKF-------MWEILS-RGAVGAIVLVDSSRPITFHA-----EEI 112 (187)
T ss_pred ------------------EcCcceEEEecCCCcHHHHH-------HHHHHh-CCcceEEEEEecCCCcchHH-----HHH
Confidence 02246889999999999833 111111 22578899999987665411 222
Q ss_pred HHHHhhcC-CCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 224 CSILYKTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 224 ~~~~~~~~-~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
+..+.... +|+++++||.|+.+..-...+.+.+. . + ....++|+++|..+++..
T Consensus 113 i~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~----~--------------------~-~~~~~vi~~~a~e~~~~~ 167 (187)
T COG2229 113 IDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK----L--------------------E-LLSVPVIEIDATEGEGAR 167 (187)
T ss_pred HHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH----h--------------------c-cCCCceeeeecccchhHH
Confidence 23444444 99999999999987532222222111 0 0 125899999999999999
Q ss_pred HHHHHHHHH
Q 020549 303 AYFKAVEES 311 (324)
Q Consensus 303 ~l~~~i~~~ 311 (324)
+.++.+...
T Consensus 168 ~~L~~ll~~ 176 (187)
T COG2229 168 DQLDVLLLK 176 (187)
T ss_pred HHHHHHHhh
Confidence 988887765
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=7e-14 Score=120.67 Aligned_cols=185 Identities=16% Similarity=0.223 Sum_probs=106.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...+..|.|+|..|+|||||+|+|....... ++..+.++.+..+.+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~------------v~~vg~~t~~~~~~~~~-------------------- 83 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKE------------VSKVGVGTDITTRLRLS-------------------- 83 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCce------------eeecccCCCchhhHHhh--------------------
Confidence 3467778899999999999999999654332 22112121111111110
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~ 222 (324)
.....+.||||||.++...+.. +...+.+.+ ...|++++++++.+... +.++|...+
T Consensus 84 -----------------~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL~~d~~f~~dVi- 143 (296)
T COG3596 84 -----------------YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRALGTDEDFLRDVI- 143 (296)
T ss_pred -----------------ccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccccCCHHHHHHHH-
Confidence 2246789999999988522111 222233333 23589999998876553 344665433
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
....+.++++|+|.+|...+..- |...-. ...+..-..+.++.+.+..-+.+..|++.+|+..+.|++
T Consensus 144 ----~~~~~~~~i~~VtQ~D~a~p~~~--W~~~~~------~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~ 211 (296)
T COG3596 144 ----ILGLDKRVLFVVTQADRAEPGRE--WDSAGH------QPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLK 211 (296)
T ss_pred ----HhccCceeEEEEehhhhhccccc--cccccC------CCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHH
Confidence 23345899999999998765210 100000 000000011111112222123345789999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQE 314 (324)
Q Consensus 303 ~l~~~i~~~~~~ 314 (324)
.|..++++.+|.
T Consensus 212 ~l~~ali~~lp~ 223 (296)
T COG3596 212 ELVRALITALPV 223 (296)
T ss_pred HHHHHHHHhCcc
Confidence 999999998874
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.56 E-value=8.7e-14 Score=118.49 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=78.1
Q ss_pred CCCEEEEeCCCCcchhh-hhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh--hcCCCeEEEee
Q 020549 165 HLDYVLVDTPGQIEIFT-WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFN 239 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~N 239 (324)
+.++.++||||..+... .......+.+.+.. ...++++||+++.. +...+. ..+..+..+. ..-.++|+|+|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T 124 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFT 124 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEE
Confidence 56899999999877532 11223334443332 34689999999877 443331 1122222211 12257899999
Q ss_pred ccccCChHhHHHHHHhH-HHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH-HHH
Q 020549 240 KTDVAQHEFALEWMQDF-EVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE-FME 317 (324)
Q Consensus 240 K~Dl~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~-~~~ 317 (324)
++|........+++... ..|...+ ++.+. .+..+....+ |+..+.++++|++.|.+.+++ .++
T Consensus 125 ~~d~l~~~~~~~~~~~~~~~l~~l~-----------~~c~~---r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~ 189 (196)
T cd01852 125 RGDDLEGGTLEDYLENSCEALKRLL-----------EKCGG---RYVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGK 189 (196)
T ss_pred CccccCCCcHHHHHHhccHHHHHHH-----------HHhCC---eEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCC
Confidence 99988765444333322 1111111 11000 0111112223 567789999999999999998 666
Q ss_pred hhhcc
Q 020549 318 TYKYC 322 (324)
Q Consensus 318 ~~~~~ 322 (324)
.|..+
T Consensus 190 ~~~~~ 194 (196)
T cd01852 190 PYTND 194 (196)
T ss_pred CCCCC
Confidence 66554
No 260
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.56 E-value=8.9e-15 Score=129.62 Aligned_cols=183 Identities=19% Similarity=0.284 Sum_probs=106.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE-EEeccCCccccccccc---ccchhcHHHHHHHHHHcCCCCCCccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAA---NIDIRDTIRYKEVMKQFNLGPNGGIL 142 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~-~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (324)
+...+++.+|...-|||||+.+|+......-... .-+ ...+..+++ .+|..-.+..-+.-++-|+ .|-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l----~~dS~~~~t~g~~~D~ALLvDGL~AEREQGI----TID 75 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASL----ERDSKRKGTQGEKIDLALLVDGLEAEREQGI----TID 75 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHH----hcccccccCCCCccchhhhhhhhHHHHhcCc----eEE
Confidence 4567899999999999999999998754421000 000 001111111 2222111111111111111 122
Q ss_pred ccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
....+|+.. ..++++.||||+++| .+...-. .+-||++|++||++.++..++.-...+.
T Consensus 76 VAYRyFsT~-------------KRkFIiADTPGHeQY-TRNMaTG-------ASTadlAIlLVDAR~Gvl~QTrRHs~I~ 134 (431)
T COG2895 76 VAYRYFSTE-------------KRKFIIADTPGHEQY-TRNMATG-------ASTADLAILLVDARKGVLEQTRRHSFIA 134 (431)
T ss_pred EEeeecccc-------------cceEEEecCCcHHHH-hhhhhcc-------cccccEEEEEEecchhhHHHhHHHHHHH
Confidence 344455543 679999999998775 2221111 1447999999999999988875544332
Q ss_pred HHHHHhhcCCC-eEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549 223 ACSILYKTRLP-LVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (324)
Q Consensus 223 ~~~~~~~~~~p-~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~ 299 (324)
. -.++. +|+++|||||++- +...++..++..+++.+ + . ....+||+||+.|+
T Consensus 135 s-----LLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L--------------~-----~-~~~~~IPiSAl~GD 189 (431)
T COG2895 135 S-----LLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQL--------------G-----L-KDVRFIPISALLGD 189 (431)
T ss_pred H-----HhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHc--------------C-----C-CcceEEechhccCC
Confidence 2 23443 5779999999974 33455555555554433 1 1 23589999999999
Q ss_pred ChHH
Q 020549 300 GIEA 303 (324)
Q Consensus 300 gv~~ 303 (324)
||-.
T Consensus 190 NV~~ 193 (431)
T COG2895 190 NVVS 193 (431)
T ss_pred cccc
Confidence 9863
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.2e-14 Score=133.10 Aligned_cols=173 Identities=21% Similarity=0.276 Sum_probs=107.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc-----
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS----- 144 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 144 (324)
..++|+-+-..|||||..+|+...... + .+.--..+++...+....||...
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~-------------~-----------~Rem~~Q~LDsMdiERERGITIKaq~v~ 65 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGL-------------S-----------EREMRAQVLDSMDIERERGITIKAQAVR 65 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCc-------------C-----------hHHHHHHhhhhhhhHhhcCceEEeeEEE
Confidence 447899999999999999999864321 1 11111122333333333343321
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
+.+-... +..+.+.|+||||+.+|.+ .+.+.++ .|-.+++||||+.|.+.++. ...
T Consensus 66 l~Yk~~~-----------g~~Y~lnlIDTPGHVDFsY------EVSRSLA--ACEGalLvVDAsQGveAQTl-----AN~ 121 (603)
T COG0481 66 LNYKAKD-----------GETYVLNLIDTPGHVDFSY------EVSRSLA--ACEGALLVVDASQGVEAQTL-----ANV 121 (603)
T ss_pred EEEEeCC-----------CCEEEEEEcCCCCccceEE------EehhhHh--hCCCcEEEEECccchHHHHH-----HHH
Confidence 1111100 2356788999999999844 2222222 24678999999999987762 222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......+.-+|-|+||+||...+- ....++++. -++ ......+.+|||+|.||+++
T Consensus 122 YlAle~~LeIiPViNKIDLP~Adp-ervk~eIe~-----------------~iG------id~~dav~~SAKtG~gI~~i 177 (603)
T COG0481 122 YLALENNLEIIPVLNKIDLPAADP-ERVKQEIED-----------------IIG------IDASDAVLVSAKTGIGIEDV 177 (603)
T ss_pred HHHHHcCcEEEEeeecccCCCCCH-HHHHHHHHH-----------------HhC------CCcchheeEecccCCCHHHH
Confidence 234456788899999999986531 112222221 011 13357899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
++.|++.+|.
T Consensus 178 Le~Iv~~iP~ 187 (603)
T COG0481 178 LEAIVEKIPP 187 (603)
T ss_pred HHHHHhhCCC
Confidence 9999999874
No 262
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.55 E-value=1.2e-14 Score=112.98 Aligned_cols=115 Identities=23% Similarity=0.390 Sum_probs=66.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+|+|.+|||||||+|+|++..... +...++++..... +...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------~~~~~~~T~~~~~------------------~~~~------- 43 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK------------VSNIPGTTRDPVY------------------GQFE------- 43 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE------------ESSSTTSSSSEEE------------------EEEE-------
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc------------ccccccceeeeee------------------eeee-------
Confidence 58999999999999999999854221 2222322210000 0000
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
..+..+.|+||||+.+..........+.+.++. ..+|+++||+|+..... .....++ +.+.
T Consensus 44 ------------~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~--~~~~~~~---~~l~- 105 (116)
T PF01926_consen 44 ------------YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT--EDDKNIL---RELK- 105 (116)
T ss_dssp ------------ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH--HHHHHHH---HHHH-
T ss_pred ------------eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC--HHHHHHH---HHHh-
Confidence 124567899999987642222211122223322 45699999999766211 1122222 3344
Q ss_pred cCCCeEEEeec
Q 020549 230 TRLPLVLAFNK 240 (324)
Q Consensus 230 ~~~p~ilv~NK 240 (324)
.+.|+++|+||
T Consensus 106 ~~~~~i~v~NK 116 (116)
T PF01926_consen 106 NKKPIILVLNK 116 (116)
T ss_dssp TTSEEEEEEES
T ss_pred cCCCEEEEEcC
Confidence 78999999998
No 263
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=2e-14 Score=122.58 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=72.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|.+|||||||+++|++..+...+.+++. .+..+....+.. +. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig-~~~~~k~~~~~~-----------------------~~-~------ 49 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVG-CSVDVKHHTYKE-----------------------GT-P------ 49 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCccee-eeEEEEEEEEcC-----------------------CC-C------
Confidence 3799999999999999999999877654333220 000000000000 00 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchhHHHhHHHHHH--
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMTFMSNMLYACS-- 225 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~~~~~~~~~~~-- 225 (324)
....+.+.||||+|++++.. .....++ .++++|+|.|. ..++.....|...+....
T Consensus 50 ------------~~~~~~l~IwDtaG~e~~~~------l~~~~yr--~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~ 109 (202)
T cd04102 50 ------------EEKTFFVELWDVGGSESVKS------TRAVFYN--QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTF 109 (202)
T ss_pred ------------CCcEEEEEEEecCCchhHHH------HHHHHhC--cCCEEEEEEECcChHHHHHHHHHHHHHHHhhcc
Confidence 01245788999999987621 1111222 34666666664 445555556654442110
Q ss_pred --------------HHhhcCCCeEEEeeccccCCh
Q 020549 226 --------------ILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 226 --------------~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
.....++|+|||+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 110 PTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ccccccccccccccccCCCCceEEEEEECccchhh
Confidence 011246899999999999764
No 264
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.53 E-value=5.1e-14 Score=115.89 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=108.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHH-cC---CCCCCcccccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ-FN---LGPNGGILTSL 145 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---l~~~~~~~~~~ 145 (324)
..|.+.|+||||||+|+.+++...... +...++..|.... .+. +.+.. .+ .+.+.|-.|.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~----------~Da----~~l~~~~g~~i~~v~TG~~CH- 77 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTK----------EDA----DRLRKLPGEPIIGVETGKGCH- 77 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeech----------hhH----HHHHhCCCCeeEEeccCCccC-
Confidence 789999999999999999999887665 6777766664331 000 01111 11 1223342331
Q ss_pred cccChHH-HHHHHHHHHHhCCCCEEEEeCCC-CcchhhhhhhHHHHHHHHhccCCc-EEEEEEcCCCCCCchhHHHhHHH
Q 020549 146 NLFTTKF-DEVISLIERRADHLDYVLVDTPG-QIEIFTWSASGAIITEAFASTFPT-VVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG-~~~~~~~~~~~~~~~~~~~~~~~d-~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
+..+| .+.++.+.......+++|+++.| ..-++. - ...| +-|||+|..+|..-....-..+
T Consensus 78 --~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s-p------------~L~d~~~v~VidvteGe~~P~K~gP~i- 141 (202)
T COG0378 78 --LDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFS-P------------DLGDHLRVVVIDVTEGEDIPRKGGPGI- 141 (202)
T ss_pred --CcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccC-c------------chhhceEEEEEECCCCCCCcccCCCce-
Confidence 22233 23344444444457999999999 322211 0 1123 7899999998876554311111
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
-..-++|+||.|+.+.-.. ....+..+ +..+..+++++|+++|+|
T Consensus 142 --------~~aDllVInK~DLa~~v~~dlevm~~da~-------------------------~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 142 --------FKADLLVINKTDLAPYVGADLEVMARDAK-------------------------EVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred --------eEeeEEEEehHHhHHHhCccHHHHHHHHH-------------------------HhCCCCCEEEEeCCCCcC
Confidence 1234899999999865221 11111111 345789999999999999
Q ss_pred hHHHHHHHHHH
Q 020549 301 IEAYFKAVEES 311 (324)
Q Consensus 301 v~~l~~~i~~~ 311 (324)
++++++++...
T Consensus 189 ~~~~~~~i~~~ 199 (202)
T COG0378 189 LDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHhh
Confidence 99999888754
No 265
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.53 E-value=1.9e-14 Score=128.64 Aligned_cols=225 Identities=14% Similarity=0.112 Sum_probs=134.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+....|+..|+.++|||||+..|.......+.-.+-...|..-++..-+-+.++. +.-+|+.. ++++.-.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS--------~~v~Gf~d-gk~~rlk 184 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADIS--------LRVYGFDD-GKVVRLK 184 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhcccccee--------EEEEEecC-CceEeec
Confidence 34457899999999999999999987766544322211111111111111111111 11233333 3333222
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
+.+....+.. .....+.-+.|+||.|++. |.+..... +.....|+.+++|.|.++....+ .+++.
T Consensus 185 nPld~aE~~~----vv~~aDklVsfVDtvGHEp-wLrTtirG-----L~gqk~dYglLvVaAddG~~~~t-----kEHLg 249 (527)
T COG5258 185 NPLDEAEKAA----VVKRADKLVSFVDTVGHEP-WLRTTIRG-----LLGQKVDYGLLVVAADDGVTKMT-----KEHLG 249 (527)
T ss_pred CcccHHHHhH----hhhhcccEEEEEecCCccH-HHHHHHHH-----HhccccceEEEEEEccCCcchhh-----hHhhh
Confidence 2232222221 1112245567999999544 33333332 23344699999999999987665 33446
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHH-hHHHHhc-cCceeeeccccCCChHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSL-ALDEFYK-NLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~iv~vSA~~g~gv~~ 303 (324)
.+...++|+|+|++|||+...++.+...+++..+++...+.|-...+....... ...+... .+|||.+||.+|+|++-
T Consensus 250 i~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl 329 (527)
T COG5258 250 IALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL 329 (527)
T ss_pred hhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH
Confidence 667789999999999999999999999999998888876654332222222111 1112222 57999999999999998
Q ss_pred HHHHHHHHHHH
Q 020549 304 YFKAVEESAQE 314 (324)
Q Consensus 304 l~~~i~~~~~~ 314 (324)
|.+.+....+.
T Consensus 330 L~e~f~~Lp~r 340 (527)
T COG5258 330 LDEFFLLLPKR 340 (527)
T ss_pred HHHHHHhCCcc
Confidence 87777655443
No 266
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.52 E-value=8.1e-14 Score=127.46 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=113.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
..|+||-+...|||||+..|+.+...-... .. ..+.+|+.-.+....||.. ++
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~----------------------e~-v~ERvMDSnDlEkERGITI----La 58 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFRER----------------------EE-VAERVMDSNDLEKERGITI----LA 58 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccc----------------------cc-hhhhhcCccchhhhcCcEE----Ee
Confidence 459999999999999999999874321100 00 0122333333333344432 22
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
++. ...+.+..+.|+||||+.+| .+.....+ ...|.++++|||.++..+++.. .+.+...
T Consensus 59 KnT-------av~~~~~~INIvDTPGHADF--GGEVERvl------~MVDgvlLlVDA~EGpMPQTrF-----VlkKAl~ 118 (603)
T COG1217 59 KNT-------AVNYNGTRINIVDTPGHADF--GGEVERVL------SMVDGVLLLVDASEGPMPQTRF-----VLKKALA 118 (603)
T ss_pred ccc-------eeecCCeEEEEecCCCcCCc--cchhhhhh------hhcceEEEEEEcccCCCCchhh-----hHHHHHH
Confidence 221 11255789999999999998 33333222 2348999999999999999733 2245556
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC----------C
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG----------A 299 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g----------~ 299 (324)
.+++-|+|+||+|.....-- +...+.-.|.-.+... .-.-..|++..||+.| .
T Consensus 119 ~gL~PIVVvNKiDrp~Arp~-~Vvd~vfDLf~~L~A~----------------deQLdFPivYAS~~~G~a~~~~~~~~~ 181 (603)
T COG1217 119 LGLKPIVVINKIDRPDARPD-EVVDEVFDLFVELGAT----------------DEQLDFPIVYASARNGTASLDPEDEAD 181 (603)
T ss_pred cCCCcEEEEeCCCCCCCCHH-HHHHHHHHHHHHhCCC----------------hhhCCCcEEEeeccCceeccCcccccc
Confidence 78888999999999874311 1222222222222111 0012468999999988 4
Q ss_pred ChHHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQE 314 (324)
Q Consensus 300 gv~~l~~~i~~~~~~ 314 (324)
++..||+.|.+++|.
T Consensus 182 ~m~pLfe~I~~hvp~ 196 (603)
T COG1217 182 DMAPLFETILDHVPA 196 (603)
T ss_pred chhHHHHHHHHhCCC
Confidence 789999999999875
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2e-13 Score=123.93 Aligned_cols=107 Identities=18% Similarity=0.307 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-------CCchhHHHhHHHHHHHHhhcCC-CeEE
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRL-PLVL 236 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~~~~~-p~il 236 (324)
.+.+.|+|+||+.+|......+ .+.+|++|+|||++.+ ...++....++ ..-.++ -+|+
T Consensus 84 k~~~tIiDaPGHrdFvknmItG--------asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L-----a~tlGi~~lIV 150 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITG--------ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL-----ARTLGIKQLIV 150 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcc--------hhhccEEEEEEECCCCccccccccCCchhHHHHH-----HHhcCCceEEE
Confidence 4568899999965652211111 1346999999999987 45555333222 222343 4588
Q ss_pred EeeccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCChHH
Q 020549 237 AFNKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 237 v~NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~gv~~ 303 (324)
++||+|+++ .++..+....+..|.+.+ .|.+ ..+++|+||..|+|+.+
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~-------------------G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMV-------------------GYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHc-------------------CCCccCCeEEecccccCCcccc
Confidence 999999986 333344444444333322 3333 37899999999999875
No 268
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.51 E-value=4.2e-14 Score=110.03 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=99.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
..+.++|-.++|||||+|.+....+.....+++ .+..+.. +
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptv--------------Gfnmrk~-------------------t------ 61 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTV--------------GFNMRKV-------------------T------ 61 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccc--------------cceeEEe-------------------c------
Confidence 458999999999999999987765543221111 1111111 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHHHh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILY 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~~~ 228 (324)
.+...+.+||.|||.+|. ... .++.+ ..++++|+||+.+.-. ..--.+++. .+....
T Consensus 62 -------------kgnvtiklwD~gGq~rfr--smW----erycR--~v~aivY~VDaad~~k-~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 62 -------------KGNVTIKLWDLGGQPRFR--SMW----ERYCR--GVSAIVYVVDAADPDK-LEASRSELHDLLDKPS 119 (186)
T ss_pred -------------cCceEEEEEecCCCccHH--HHH----HHHhh--cCcEEEEEeecCCccc-chhhHHHHHHHhcchh
Confidence 236678899999998872 211 11222 2489999999987322 222222222 222233
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
-.++|+++.+||.|+...-...++.+++. ..- ---..+-++.+||+...||+.+.+.|
T Consensus 120 l~gip~LVLGnK~d~~~AL~~~~li~rmg---------------------L~s-itdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGALSKIALIERMG---------------------LSS-ITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred hcCCcEEEecccccCcccccHHHHHHHhC---------------------ccc-cccceEEEEEEEEcCCccHHHHHHHH
Confidence 36899999999999987543333333221 100 00123678999999999999999999
Q ss_pred HHHHH
Q 020549 309 EESAQ 313 (324)
Q Consensus 309 ~~~~~ 313 (324)
.++-.
T Consensus 178 i~hsk 182 (186)
T KOG0075|consen 178 IEHSK 182 (186)
T ss_pred HHHhh
Confidence 88753
No 269
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=5.8e-13 Score=115.80 Aligned_cols=145 Identities=19% Similarity=0.291 Sum_probs=87.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...+..|+++|++|+|||||++.|.+..... .+....++. .+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------~~~~~~g~i-----------------------~i~~-- 79 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------NISDIKGPI-----------------------TVVT-- 79 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------ccccccccE-----------------------EEEe--
Confidence 4567889999999999999999998752211 000000000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+.++.|+||||... .+.... ..+|++++++|+..++...+. ..+.
T Consensus 80 -----------------~~~~~i~~vDtPg~~~---------~~l~~a--k~aDvVllviDa~~~~~~~~~-----~i~~ 126 (225)
T cd01882 80 -----------------GKKRRLTFIECPNDIN---------AMIDIA--KVADLVLLLIDASFGFEMETF-----EFLN 126 (225)
T ss_pred -----------------cCCceEEEEeCCchHH---------HHHHHH--HhcCEEEEEEecCcCCCHHHH-----HHHH
Confidence 1256889999998421 122222 336999999999887765542 1224
Q ss_pred HHhhcCCCeEE-EeeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549 226 ILYKTRLPLVL-AFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (324)
Q Consensus 226 ~~~~~~~p~il-v~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~ 299 (324)
.+...++|.++ |+||+|+..... .....+.++. .+ ..++.++.+++++||++.-
T Consensus 127 ~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~-----------------~~---~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 127 ILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH-----------------RF---WTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH-----------------HH---HHhhCCCCcEEEEeeccCC
Confidence 44556788655 999999985432 2222222221 11 1134567899999999874
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=4.1e-13 Score=134.60 Aligned_cols=70 Identities=23% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+..+.||||||+.++.. .....+ ..+|++++++|+..+...... ..+..+...++|+++|+||+|+
T Consensus 58 ~~~~i~liDtPG~~~~~~------~~~~~l--~~aD~vllvvd~~~~~~~~~~-----~~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTG------EVERAL--RVLDGAVVVVCAVGGVEPQTE-----TVWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHHH------HHHHHH--HHhCeEEEEEeCCCCcCHHHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence 467899999999876421 112222 236999999999887654431 1223445568999999999998
Q ss_pred CCh
Q 020549 244 AQH 246 (324)
Q Consensus 244 ~~~ 246 (324)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 754
No 271
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.46 E-value=6.4e-13 Score=135.77 Aligned_cols=136 Identities=23% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
.+.+.||||||++.|... . ......+|++++|+|+.+++.+++.. .+..+...++|+|+|+||+|+.
T Consensus 525 ~p~i~fiDTPGhe~F~~l------r--~~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSL------R--KRGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred cCcEEEEECCCcHHHHHH------H--HhhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCc
Confidence 356899999997665210 1 11124479999999999887776532 2234555689999999999997
Q ss_pred ChHh-------HHHHHHhHHHHHHHHhcC-ccchhhHHHHHHH------hHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 245 QHEF-------ALEWMQDFEVFQAAISSD-HSYTSTLTNSLSL------ALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 245 ~~~~-------~~~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~------~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
.... ...+..+.+....++... ......| .+++. .++++....++|||||++|+|+++|+..|..
T Consensus 592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L-~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKL-YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH-HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4321 011111111100100000 0000001 01110 1234556789999999999999999998876
Q ss_pred HHHH
Q 020549 311 SAQE 314 (324)
Q Consensus 311 ~~~~ 314 (324)
....
T Consensus 671 l~~~ 674 (1049)
T PRK14845 671 LAQK 674 (1049)
T ss_pred hhHH
Confidence 5543
No 272
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.45 E-value=9e-13 Score=121.68 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=105.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.....+.|+|.||+|||||+|.++..... +-.+++||. ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradve-------------vqpYaFTTk----sL----------------------- 205 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDE-------------VQPYAFTTK----LL----------------------- 205 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccc-------------cCCcccccc----hh-----------------------
Confidence 34567899999999999999998876443 566677761 11
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchh-HHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMT-FMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~-~~~~~~~~~ 224 (324)
|..++. ..-..|+++||||+.+.-........+.... ......+|+|++|.++.+...- ....++..+
T Consensus 206 -~vGH~d---------ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI 275 (620)
T KOG1490|consen 206 -LVGHLD---------YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI 275 (620)
T ss_pred -hhhhhh---------hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh
Confidence 111221 1245788999999876421111111111111 1233468899999887664321 111112111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
. -.-.++|+|+|+||||+..++.+.+..+++ ...+ .--.+++++.+|+.+.+||.++
T Consensus 276 K-pLFaNK~~IlvlNK~D~m~~edL~~~~~~l---l~~~-------------------~~~~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 276 K-PLFANKVTILVLNKIDAMRPEDLDQKNQEL---LQTI-------------------IDDGNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred H-HHhcCCceEEEeecccccCccccCHHHHHH---HHHH-------------------HhccCceEEEecccchhceeeH
Confidence 1 223689999999999998876432222111 1111 0113478999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
....++.+..
T Consensus 333 rt~ACe~LLa 342 (620)
T KOG1490|consen 333 RTTACEALLA 342 (620)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 273
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.44 E-value=1.1e-12 Score=117.41 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCcEEEEEEcCCC-CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHH
Q 020549 197 FPTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVF 259 (324)
Q Consensus 197 ~~d~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l 259 (324)
..++++|++++.. +..+.+ +..++.+.. .+|+|+|+||+|+...++.....+.+...
T Consensus 114 rvh~~ly~i~~~~~~l~~~D-----~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~ 171 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLD-----IEFMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMED 171 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHH-----HHHHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 3589999998764 443333 222234443 79999999999998876554444444433
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.43 E-value=2.2e-12 Score=98.02 Aligned_cols=143 Identities=20% Similarity=0.151 Sum_probs=88.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+++++|..|+|||||.+.|.|.....+...++ +
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv-------e--------------------------------------- 35 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV-------E--------------------------------------- 35 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccccee-------e---------------------------------------
Confidence 468999999999999999998874332221111 0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
-.+=-.+||||- ++.+......+.-. ...+|++++|-.+.+...... . ....-
T Consensus 36 ---------------~~d~~~IDTPGE--y~~~~~~Y~aL~tt--~~dadvi~~v~~and~~s~f~---p-----~f~~~ 88 (148)
T COG4917 36 ---------------FNDKGDIDTPGE--YFEHPRWYHALITT--LQDADVIIYVHAANDPESRFP---P-----GFLDI 88 (148)
T ss_pred ---------------ccCccccCCchh--hhhhhHHHHHHHHH--hhccceeeeeecccCccccCC---c-----ccccc
Confidence 001125899993 22222222222221 134689999888776543321 0 11222
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
...|+|-|++|+|+.++..+....+.+. + .+..+||.+||.+..|+++|++.|.
T Consensus 89 ~~k~vIgvVTK~DLaed~dI~~~~~~L~-------------------------e-aGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 89 GVKKVIGVVTKADLAEDADISLVKRWLR-------------------------E-AGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cccceEEEEecccccchHhHHHHHHHHH-------------------------H-cCCcceEEEeccCcccHHHHHHHHH
Confidence 4567899999999997654322221111 1 1346899999999999999999987
Q ss_pred HH
Q 020549 310 ES 311 (324)
Q Consensus 310 ~~ 311 (324)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 54
No 275
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.43 E-value=3e-12 Score=115.99 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=93.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
+..+|.|+-|||||||+|.|+.... +.+++++-++.+...+.....+. +.-+++..-.|||+||+++..-
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~--------~~~e~~~El~nGCICCT~r~dl 71 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLS--------DTGEEVVELTNGCICCTVRDDL 71 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccc--------cCCccEEEeCCceEEEeccchh
Confidence 3578999999999999999998866 44555544433332222100000 0001233456899999855433
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHH-HHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT-EAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+.+.+. . ....++.++|.|.|+.++.. -....+. ..+.. ..-|.+|-|||+.+........... ..
T Consensus 72 ~~~~~~L~--~-~~~~~D~ivIEtTGlA~P~p--v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~-----~~ 141 (323)
T COG0523 72 LPALERLL--R-RRDRPDRLVIETTGLADPAP--VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAEL-----AE 141 (323)
T ss_pred HHHHHHHH--h-ccCCCCEEEEeCCCCCCCHH--HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHH-----HH
Confidence 33333322 2 34569999999999988721 0111111 11211 2247899999998766544322221 12
Q ss_pred hhcCCCeEEEeeccccCChHhH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFA 249 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~ 249 (324)
.+....-+||+||+|+++++..
T Consensus 142 ~Qia~AD~ivlNK~Dlv~~~~l 163 (323)
T COG0523 142 DQLAFADVIVLNKTDLVDAEEL 163 (323)
T ss_pred HHHHhCcEEEEecccCCCHHHH
Confidence 2334455999999999998753
No 276
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.41 E-value=1.8e-12 Score=113.95 Aligned_cols=154 Identities=24% Similarity=0.320 Sum_probs=95.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...+.|+++|+.|+|||||+++|++...-. ....+.+.||+... +..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~----------------------------a~L---- 222 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHS----------------------------AHL---- 222 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhh----------------------------ccC----
Confidence 445779999999999999999999543221 12222223332211 111
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-----cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
..+..++|.||-|+.. .+...+...|++ ..+|+++.|+|.++..-... . .
T Consensus 223 ----------------psg~~vlltDTvGFis-----dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q-~---e 277 (410)
T KOG0410|consen 223 ----------------PSGNFVLLTDTVGFIS-----DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQ-R---E 277 (410)
T ss_pred ----------------CCCcEEEEeechhhhh-----hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHH-H---H
Confidence 2256788999999654 233344444433 34799999999987543322 1 2
Q ss_pred HHHHHHhhcCCC-------eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeec
Q 020549 222 YACSILYKTRLP-------LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294 (324)
Q Consensus 222 ~~~~~~~~~~~p-------~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vS 294 (324)
..+..++..+.| +|=|=||+|..+..- +. +..-.+++|
T Consensus 278 ~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----e~------------------------------E~n~~v~is 322 (410)
T KOG0410|consen 278 TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----EE------------------------------EKNLDVGIS 322 (410)
T ss_pred HHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----cc------------------------------ccCCccccc
Confidence 223455666654 345778888765420 00 112268899
Q ss_pred cccCCChHHHHHHHHHHHH
Q 020549 295 SVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 295 A~~g~gv~~l~~~i~~~~~ 313 (324)
|++|.|++++...+.....
T Consensus 323 altgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccCccHHHHHHHHHHHhh
Confidence 9999999999999987654
No 277
>PLN00023 GTP-binding protein; Provisional
Probab=99.41 E-value=6.6e-13 Score=119.25 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=26.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~ 97 (324)
....+|+|+|..|||||||+++|++..+...
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~ 49 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR 49 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccc
Confidence 3457899999999999999999998876543
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.40 E-value=4e-13 Score=104.72 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=38.7
Q ss_pred CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh--hcCCCeEEEeeccc
Q 020549 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD 242 (324)
Q Consensus 167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D 242 (324)
.+.|||++|+.++.. .....+ ..+|++++|+|..+.. .......++..+..+. ..++|+|+|+||.|
T Consensus 51 ~~~~~d~~g~~~~~~--~~~~~~------~~~d~~ilv~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 51 SLQFWDFGGQEEFYS--QHQFFL------KKADAVILVYDLSDPE-SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEESSSHCHHC--TSHHHH------HHSCEEEEEEECCGHH-HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEecCccceecc--cccchh------hcCcEEEEEEcCCChH-HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 478999999877532 111111 2258999999986532 1122222222223333 24599999999998
No 279
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=9.3e-12 Score=115.30 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
...+.+|+|+|.||||||||+|+|++...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~ 46 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV 46 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcc
Confidence 34667899999999999999999977643
No 280
>PTZ00099 rab6; Provisional
Probab=99.38 E-value=1e-12 Score=109.86 Aligned_cols=114 Identities=18% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
..++.||||||++++.. ....++ ..+|++++|+|... ++.....|...+ ......+.|+++|+||+|
T Consensus 28 ~v~l~iwDt~G~e~~~~------~~~~~~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i---~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRS------LIPSYI--RDSAAAIVVYDITNRQSFENTTKWIQDI---LNERGKDVIIALVGNKTD 96 (176)
T ss_pred EEEEEEEECCChHHhhh------ccHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHH---HHhcCCCCeEEEEEECcc
Confidence 56889999999987621 111122 34689999999766 344444453322 122235689999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
+....... ..+...+. .. ....++++||++|.||+++|+.|.+.+++
T Consensus 97 L~~~~~v~--~~e~~~~~----------------------~~-~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 97 LGDLRKVT--YEEGMQKA----------------------QE-YNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccccCCC--HHHHHHHH----------------------HH-cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 96432110 00001000 11 13568999999999999999999999876
No 281
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.8e-12 Score=110.33 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
...++.|+|+||+... ++..+.. ...|+.++|||...+.+.++. +.+..-.. .....|+|+||+|
T Consensus 68 e~lq~tlvDCPGHasL---------IRtiiggaqiiDlm~lviDv~kG~QtQtA--EcLiig~~---~c~klvvvinkid 133 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHASL---------IRTIIGGAQIIDLMILVIDVQKGKQTQTA--ECLIIGEL---LCKKLVVVINKID 133 (522)
T ss_pred ccceeEEEeCCCcHHH---------HHHHHhhhheeeeeeEEEehhcccccccc--hhhhhhhh---hccceEEEEeccc
Confidence 3567899999996442 2222222 335999999999999887752 12211111 3345699999999
Q ss_pred cCChHhHHHHHHhHH-HHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC----CChHHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFE-VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG----AGIEAYFKAVEESAQE 314 (324)
Q Consensus 243 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g----~gv~~l~~~i~~~~~~ 314 (324)
..........++... ++.+.++. ..+-++.||+++||+.| +++.+|.+.|...+-+
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~----------------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLES----------------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHh----------------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 887654332322221 11111110 03445689999999999 7888888888776643
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.38 E-value=6.4e-12 Score=126.79 Aligned_cols=68 Identities=26% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.|+||||+++|.. .+...+ ..+|++|+|||+..++..++.. .+......+.|.|+++||+|+.
T Consensus 86 ~~~i~liDtPG~~df~~------~~~~~l--~~~D~avlVvda~~g~~~~t~~-----~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGG------DVTRAM--RAVDGAIVVVDAVEGVMPQTET-----VLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHH------HHHHHH--HhcCEEEEEEECCCCCCccHHH-----HHHHHHHcCCCeEEEEECchhh
Confidence 56788999999988621 222222 3359999999999988766522 1233344578899999999987
Q ss_pred C
Q 020549 245 Q 245 (324)
Q Consensus 245 ~ 245 (324)
.
T Consensus 153 ~ 153 (731)
T PRK07560 153 I 153 (731)
T ss_pred c
Confidence 4
No 283
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5.3e-12 Score=115.58 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=107.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
.|+..|+...|||||+.++.+..-.... ....-+.++|+. +.. +
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~-----------EekKRG~TiDlg-------------------~~y----~-- 45 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLP-----------EEKKRGITIDLG-------------------FYY----R-- 45 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccch-----------hhhhcCceEeee-------------------eEe----c--
Confidence 5889999999999999999886433210 001111122211 110 0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
...+..+-|+|.||+.++ +...+.. ...|+++++||+.+++..++ .+++..+..
T Consensus 46 -----------~~~d~~~~fIDvpgh~~~---------i~~miag~~~~d~alLvV~~deGl~~qt-----gEhL~iLdl 100 (447)
T COG3276 46 -----------KLEDGVMGFIDVPGHPDF---------ISNLLAGLGGIDYALLVVAADEGLMAQT-----GEHLLILDL 100 (447)
T ss_pred -----------cCCCCceEEeeCCCcHHH---------HHHHHhhhcCCceEEEEEeCccCcchhh-----HHHHHHHHh
Confidence 022457789999998775 2222222 34599999999999998876 333445566
Q ss_pred cCCCe-EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 230 TRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 230 ~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
.+++. ++|+||+|+.+..+..+..+.+.. .+ . ++..+++++||++|+||++|.+.|
T Consensus 101 lgi~~giivltk~D~~d~~r~e~~i~~Il~---~l-------------------~-l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 101 LGIKNGIIVLTKADRVDEARIEQKIKQILA---DL-------------------S-LANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred cCCCceEEEEeccccccHHHHHHHHHHHHh---hc-------------------c-cccccccccccccCCCHHHHHHHH
Confidence 77777 899999999998765554444331 11 1 356889999999999999999999
Q ss_pred HHHHH
Q 020549 309 EESAQ 313 (324)
Q Consensus 309 ~~~~~ 313 (324)
.+...
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 99884
No 284
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.35 E-value=5.8e-12 Score=104.49 Aligned_cols=121 Identities=22% Similarity=0.332 Sum_probs=63.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
...|.|+|++|+|||+|+.+|....... +++++... .+....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-----------T~tS~e~n-----------------------~~~~~~---- 44 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-----------TVTSMENN-----------------------IAYNVN---- 44 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS--------------B---SSEE-----------------------EECCGS----
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC-----------eeccccCC-----------------------ceEEee----
Confidence 3459999999999999999999884432 22222111 011100
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH-
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI- 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~- 226 (324)
......+.++|+||+.+. +. .+.+.+ ....+..||||||+...........+.+..+-.
T Consensus 45 -------------~~~~~~~~lvD~PGH~rl--r~----~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~ 105 (181)
T PF09439_consen 45 -------------NSKGKKLRLVDIPGHPRL--RS----KLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD 105 (181)
T ss_dssp -------------STCGTCECEEEETT-HCC--CH----HHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------cCCCCEEEEEECCCcHHH--HH----HHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence 023567899999998765 22 222221 113357999999986422222222222221111
Q ss_pred --HhhcCCCeEEEeeccccCCh
Q 020549 227 --LYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 227 --~~~~~~p~ilv~NK~Dl~~~ 246 (324)
......|++|++||.|+...
T Consensus 106 ~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 106 TEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHCCTT--EEEEEEE-TTSTT-
T ss_pred hhhccCCCCEEEEEeCcccccc
Confidence 12467899999999999864
No 285
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.8e-11 Score=119.51 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCc-ccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 145 (324)
.+...|+|+|+.++|||||..+|+-..........+... .+..|..... .+.|+-.... +.+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---------~~~~D~~e~E------qeRGITI~saa~s~~- 71 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---------AATMDWMEQE------QERGITITSAATTLF- 71 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---------CccCCCcHHH------HhcCCEEeeeeeEEE-
Confidence 345669999999999999999998765544331111100 0011100000 0111111111 1111
Q ss_pred cccChHHHHHHHHHHHHhC-CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
+. ...+.|+||||+.+|- . .+.+.++ .+|.+|.|+|+.+++.+++.. .+
T Consensus 72 -----------------~~~~~~iNlIDTPGHVDFt--~----EV~rslr--vlDgavvVvdaveGV~~QTEt-----v~ 121 (697)
T COG0480 72 -----------------WKGDYRINLIDTPGHVDFT--I----EVERSLR--VLDGAVVVVDAVEGVEPQTET-----VW 121 (697)
T ss_pred -----------------EcCceEEEEeCCCCccccH--H----HHHHHHH--hhcceEEEEECCCCeeecHHH-----HH
Confidence 44 3899999999999982 2 2222222 258999999999999988732 23
Q ss_pred HHHhhcCCCeEEEeeccccCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~ 247 (324)
+.+...++|.++++||+|....+
T Consensus 122 rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 122 RQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHhhcCCCeEEEEECccccccC
Confidence 56677899999999999998754
No 286
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=2.8e-11 Score=110.97 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.+..|+|+|.+|+|||||||+|.|-.....+...+ ++. .+|. .. ..+..
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t-----Gv~---etT~----~~----------------~~Y~~--- 82 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPT-----GVV---ETTM----EP----------------TPYPH--- 82 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S-----SSH---SCCT----S-----------------EEEE----
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC-----CCC---cCCC----CC----------------eeCCC---
Confidence 56789999999999999999998753332111100 010 0110 00 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
...+.+.|||.||+..... . .....+.+.-...|+++++.+.+- ...+ ...+..+
T Consensus 83 ---------------p~~pnv~lWDlPG~gt~~f--~-~~~Yl~~~~~~~yD~fiii~s~rf--~~nd-----v~La~~i 137 (376)
T PF05049_consen 83 ---------------PKFPNVTLWDLPGIGTPNF--P-PEEYLKEVKFYRYDFFIIISSERF--TEND-----VQLAKEI 137 (376)
T ss_dssp ---------------SS-TTEEEEEE--GGGSS-----HHHHHHHTTGGG-SEEEEEESSS----HHH-----HHHHHHH
T ss_pred ---------------CCCCCCeEEeCCCCCCCCC--C-HHHHHHHccccccCEEEEEeCCCC--chhh-----HHHHHHH
Confidence 2246899999999755311 1 111111111133487777666532 2222 3334667
Q ss_pred hhcCCCeEEEeeccccC-ChH------hH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc-
Q 020549 228 YKTRLPLVLAFNKTDVA-QHE------FA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS- 297 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~-~~~------~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~- 297 (324)
.+.++|+.+|-+|+|.. ..+ .. .+.++.++. . ..+.+. ..-....+||-+|+..
T Consensus 138 ~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~---~----------c~~~L~---k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 138 QRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE---N----------CLENLQ---KAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH---H----------HHHHHH---CTT-SS--EEEB-TTTT
T ss_pred HHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH---H----------HHHHHH---HcCCCcCceEEEeCCCc
Confidence 78899999999999961 111 00 111112110 0 000000 0111235789999987
Q ss_pred -CCChHHHHHHHHHHHHHHHHh
Q 020549 298 -GAGIEAYFKAVEESAQEFMET 318 (324)
Q Consensus 298 -g~gv~~l~~~i~~~~~~~~~~ 318 (324)
...+..|.+.|.+.+|...+.
T Consensus 202 ~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 202 SKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp TSTTHHHHHHHHHHHS-GGGHH
T ss_pred ccCChHHHHHHHHHHhHHHHHH
Confidence 467888999999988875543
No 287
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.31 E-value=1.1e-11 Score=101.74 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=80.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
.++++|+.|+|||||+++++.... +..+.++..+.+.. .+|-.... ..-..-.. -.+||+||+. ..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~------~~d~~~~~--~~~~~v~~-l~~GCiCC~~---~~ 67 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEV------GIDNQLVV--DTDEEIIE-MNNGCICCTV---RG 67 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCcc------chhHHHHh--CCCceEEE-eCCCEeEeeC---ch
Confidence 578999999999999999998743 33344433332211 11110000 00001111 2457899873 33
Q ss_pred HHHHHH----HHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHH-Hhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 151 KFDEVI----SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 151 ~~~~~~----~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~-~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
.+...+ ..+......++++|+||||.+++.. .....+.+. +.. ...|.++++||+.......... -
T Consensus 68 ~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~--~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~---~--- 139 (158)
T cd03112 68 DLIRALLDLLERLDAGKIAFDRIVIETTGLADPGP--VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ---T--- 139 (158)
T ss_pred hHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHH--HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc---H---
Confidence 333333 2222223478999999999987621 111111111 111 2358999999986544322111 0
Q ss_pred HHHhhcCCCeEEEeecccc
Q 020549 225 SILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl 243 (324)
....+....-++|+||+|+
T Consensus 140 ~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 140 EAQSQIAFADRILLNKTDL 158 (158)
T ss_pred HHHHHHHHCCEEEEecccC
Confidence 0112223344899999996
No 288
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=8.2e-12 Score=100.22 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.|||.-||... ++. -..+. ..+..++|+||+...-.-+............-...+.|+++.+||-|+.
T Consensus 68 ~~~l~fwdlgGQe~l--rSl----w~~yY--~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESL--RSL----WKKYY--WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred cceeEEEEcCChHHH--HHH----HHHHH--HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh
Confidence 567899999998664 111 01111 2357999999997643222111111222223334689999999999998
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~ 315 (324)
+.-...++...+.. .+.+ --+..++.||||.+|+||++-..++...++..
T Consensus 140 ~~~~~~El~~~~~~-~e~~--------------------~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 140 NAMEAAELDGVFGL-AELI--------------------PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhHHHHHHHhhh-hhhc--------------------CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 76544444332221 1100 01346899999999999999999999988765
No 289
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=6.5e-11 Score=101.66 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=95.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC---------------cccccccccccc----hh-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------------AVMTLPFAANID----IR----- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~---------------~~~~~~~~~~~~----~~----- 121 (324)
...+.+|+|+|++|||||||+|.+.|-..+..+.+.+.+... .....+...++. ..
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~ 105 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKA 105 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchH
Confidence 457888999999999999999999999888777666655432 111111111111 11
Q ss_pred -cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHHHhccC
Q 020549 122 -DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFASTF 197 (324)
Q Consensus 122 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~~~~~~ 197 (324)
......++++.+||.......+. ++|.||+|++.++++....+++++.|.| |--+..++......+.+.+....
T Consensus 106 e~~~~a~~~L~~VgL~~~~~~~P~--qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~ 181 (248)
T COG1116 106 EARERAKELLELVGLAGFEDKYPH--QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181 (248)
T ss_pred hHHHHHHHHHHHcCCcchhhcCcc--ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence 12257788999999876665554 7999999999999999999999999999 66676677777777777776544
No 290
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=6.8e-11 Score=107.91 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=82.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc--ccccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL--TSLNL 147 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 147 (324)
...+||-+|.||||||...|+-....+..-.++-+.. ..+....+||+.-. ..||. .+.-+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk--------------~~~~a~SDWM~iEk---qRGISVtsSVMq 75 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK--------------SGKHAKSDWMEIEK---QRGISVTSSVMQ 75 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc--------------CCcccccHHHHHHH---hcCceEEeeEEE
Confidence 4479999999999999998875544332222221110 01111234443211 11322 22111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
|. ..+..+.|+||||+++|.. .-.+ .+ +-.|.+|.|||+..|.++++. +....+
T Consensus 76 F~-------------Y~~~~iNLLDTPGHeDFSE--DTYR-tL-----tAvDsAvMVIDaAKGiE~qT~-----KLfeVc 129 (528)
T COG4108 76 FD-------------YADCLVNLLDTPGHEDFSE--DTYR-TL-----TAVDSAVMVIDAAKGIEPQTL-----KLFEVC 129 (528)
T ss_pred ec-------------cCCeEEeccCCCCccccch--hHHH-HH-----HhhheeeEEEecccCccHHHH-----HHHHHH
Confidence 21 3467889999999999721 1111 11 124899999999999998872 233556
Q ss_pred hhcCCCeEEEeeccccCChH
Q 020549 228 YKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~ 247 (324)
+..++|++-.+||+|....+
T Consensus 130 rlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 130 RLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred hhcCCceEEEeeccccccCC
Confidence 66899999999999998754
No 291
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.30 E-value=6.1e-11 Score=108.61 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=54.1
Q ss_pred cCCcEEEEEE-cCCCC-CCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhH
Q 020549 196 TFPTVVTYVV-DTPRS-ANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTL 273 (324)
Q Consensus 196 ~~~d~iv~vv-D~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 273 (324)
..+|+.++|. |++-+ .....+.......+..++..++|+|+|+||+|-...+ ..++.+.+.
T Consensus 143 dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e-t~~l~~~l~---------------- 205 (492)
T TIGR02836 143 EHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPE-TEALRQELE---------------- 205 (492)
T ss_pred hcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCch-hHHHHHHHH----------------
Confidence 3578988888 66421 1122233444555677888999999999999944333 112222221
Q ss_pred HHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549 274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~ 316 (324)
+.+. .+++++|+.+- .-+++...+.+.+.++|
T Consensus 206 ---------eky~-vpvl~v~c~~l-~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 206 ---------EKYD-VPVLAMDVESM-RESDILSVLEEVLYEFP 237 (492)
T ss_pred ---------HHhC-CceEEEEHHHc-CHHHHHHHHHHHHhcCC
Confidence 2222 68888888763 34555555555555444
No 292
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-12 Score=105.73 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=104.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...-+++.|+|..|+|||+++.+++...|+..++.+| .+.-.+.-+.
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI----------------------gvdfalkVl~----------- 68 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI----------------------GVDFALKVLQ----------- 68 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHH----------------------hHHHHHHHhc-----------
Confidence 3456789999999999999999999998876553322 1110010000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcch------hhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHh
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI------FTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN 219 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~------~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~ 219 (324)
+.. ....+++|||.+||++| |++.+.+ ..+||.|..+..+++...|.+
T Consensus 69 --wdd------------~t~vRlqLwdIagQerfg~mtrVyykea~~------------~~iVfdvt~s~tfe~~skwkq 122 (229)
T KOG4423|consen 69 --WDD------------KTIVRLQLWDIAGQERFGNMTRVYYKEAHG------------AFIVFDVTRSLTFEPVSKWKQ 122 (229)
T ss_pred --cCh------------HHHHHHHHhcchhhhhhcceEEEEecCCcc------------eEEEEEccccccccHHHHHHH
Confidence 000 11235679999999987 2333333 367777777767777777765
Q ss_pred HHHH-HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549 220 MLYA-CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (324)
Q Consensus 220 ~~~~-~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g 298 (324)
.+.. +..-.....|+|+..||||+.+..... .-..+..+. .-..+...+++|||.+
T Consensus 123 dldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~f~----------------------kengf~gwtets~Ken 179 (229)
T KOG4423|consen 123 DLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDNFK----------------------KENGFEGWTETSAKEN 179 (229)
T ss_pred hccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHHHH----------------------hccCccceeeeccccc
Confidence 4421 111223457889999999987654221 111121111 1124567888999999
Q ss_pred CChHHHHHHHHHHHH
Q 020549 299 AGIEAYFKAVEESAQ 313 (324)
Q Consensus 299 ~gv~~l~~~i~~~~~ 313 (324)
.|+++....+++.+.
T Consensus 180 kni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 180 KNIPEAQRELVEKIL 194 (229)
T ss_pred cChhHHHHHHHHHHH
Confidence 999999999998764
No 293
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.28 E-value=3.5e-11 Score=104.19 Aligned_cols=171 Identities=18% Similarity=0.285 Sum_probs=91.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
||.++|+.|+||||..+.+.+...+..- .... ++.++.. ..+. +
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-----------~~L~--~T~~ve~-----------------~~v~----~-- 44 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-----------LRLE--PTIDVEK-----------------SHVR----F-- 44 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-----------GG-------SEEE-----------------EEEE----C--
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-----------cccC--CcCCceE-----------------EEEe----c--
Confidence 6899999999999999999887554210 0000 0111000 0000 0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh--hhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.+||.|||..+.... .... ..+ ..+.++|||+|+...- .+.......+..+.
T Consensus 45 ------------~~~~~l~iwD~pGq~~~~~~~~~~~~~---~if--~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~- 106 (232)
T PF04670_consen 45 ------------LSFLPLNIWDCPGQDDFMENYFNSQRE---EIF--SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR- 106 (232)
T ss_dssp ------------TTSCEEEEEEE-SSCSTTHTTHTCCHH---HHH--CTESEEEEEEETT-STCHHHHHHHHHHHHHHH-
T ss_pred ------------CCCcEEEEEEcCCccccccccccccHH---HHH--hccCEEEEEEEcccccHHHHHHHHHHHHHHHH-
Confidence 125688999999998763210 1111 112 2347999999998321 11223333333322
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~ 305 (324)
....+..+.+.++|+|++..+...+..+...... .+... +.. ....++.+|--. +.+-+.|
T Consensus 107 ~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i-------------~~~~~----~~~~~~~~~~~TSI~D-~Sly~A~ 168 (232)
T PF04670_consen 107 QYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI-------------RDELE----DLGIEDITFFLTSIWD-ESLYEAW 168 (232)
T ss_dssp HHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH-------------HHHHH----HTT-TSEEEEEE-TTS-THHHHHH
T ss_pred HhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH-------------HHHhh----hccccceEEEeccCcC-cHHHHHH
Confidence 2245788999999999998876655544443111 11111 111 136778888877 5788888
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
..|+..+-
T Consensus 169 S~Ivq~Li 176 (232)
T PF04670_consen 169 SKIVQKLI 176 (232)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHc
Confidence 88877653
No 294
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.27 E-value=1.2e-10 Score=101.51 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=50.8
Q ss_pred CCCEEEEeCCCCcchhhh---hhhHHHHHH---HHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTW---SASGAIITE---AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~---~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 238 (324)
.+++.|+||||....... ......+.+ .+.....+++++|+|+...+...+. +..++.+...+.|+++|+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~----l~ia~~ld~~~~rti~Vi 199 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA----LKLAKEVDPQGERTIGVI 199 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH----HHHHHHHHHcCCcEEEEE
Confidence 478999999998542100 111122222 2222345799999999887765541 233355667889999999
Q ss_pred eccccCChH
Q 020549 239 NKTDVAQHE 247 (324)
Q Consensus 239 NK~Dl~~~~ 247 (324)
||+|..+..
T Consensus 200 TK~D~~~~~ 208 (240)
T smart00053 200 TKLDLMDEG 208 (240)
T ss_pred ECCCCCCcc
Confidence 999998754
No 295
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.27 E-value=2.3e-11 Score=105.87 Aligned_cols=182 Identities=19% Similarity=0.229 Sum_probs=106.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHH----HHHHHHHHcCCCCCCcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI----RYKEVMKQFNLGPNGGI 141 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 141 (324)
..+-+.-+|.|+.|||||||+|.++..... .+++++-+ .++...++.... ...+..+++-.-.|||.
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hg--KRIAVIlN-------EfGes~die~sl~~~~~gg~lyEewv~L~NGCl 124 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHG--KRIAVILN-------EFGESSDIEKSLAVSQEGGELYEEWVELRNGCL 124 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCC--ceEEEEhh-------hcccchhhhHHHHhccccchHHHHHHHhcCCeE
Confidence 456677899999999999999999886543 34444322 233333332221 11233344444468999
Q ss_pred cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCch------
Q 020549 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPM------ 214 (324)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~------ 214 (324)
||++ .....+.++.+....+.++.+++.|.|+..+.. -+...+.-..+.+ ..-|.+|-|||+.+.....
T Consensus 125 CCtV---k~~gvraie~lvqkkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~ 200 (391)
T KOG2743|consen 125 CCTV---KDNGVRAIENLVQKKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPD 200 (391)
T ss_pred EEEe---cchHHHHHHHHHhcCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcc
Confidence 9984 344445555555567789999999999988621 0011112222222 2348999999997654322
Q ss_pred hHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH---HHHHHHhcC
Q 020549 215 TFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE---VFQAAISSD 266 (324)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~---~l~~~~~~~ 266 (324)
.+|.+-. . +....--+++||.|+++.+....+.+.++ +++..+...
T Consensus 201 g~i~EA~---~---QiA~AD~II~NKtDli~~e~~~~l~q~I~~INslA~m~~Tk 249 (391)
T KOG2743|consen 201 GLINEAT---R---QIALADRIIMNKTDLVSEEEVKKLRQRIRSINSLAQMIETK 249 (391)
T ss_pred cchHHHH---H---HHhhhheeeeccccccCHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 2333211 1 12223368899999999877655555444 444444333
No 296
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.5e-11 Score=104.58 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=104.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
+....|+.||+.+.|||||..+|+......+..... ....+...+ ..+ ..|+-.|.....
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~-----~y~~id~aP----eEk--------~rGITIntahve--- 69 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAK-----AYDQIDNAP----EEK--------ARGITINTAHVE--- 69 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhcccccc-----chhhhccCc----hHh--------hcCceeccceeE---
Confidence 345679999999999999999998875433211100 000000000 000 111111111110
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
+ .-.+..+-.+|+||+.++-. .|... ....|.+++||.+.++..+++.- ++..
T Consensus 70 -y-------------et~~rhyahVDcPGHaDYvK------NMItg--AaqmDgAILVVsA~dGpmPqTrE-----HiLl 122 (394)
T COG0050 70 -Y-------------ETANRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVAATDGPMPQTRE-----HILL 122 (394)
T ss_pred -E-------------ecCCceEEeccCCChHHHHH------HHhhh--HHhcCccEEEEEcCCCCCCcchh-----hhhh
Confidence 0 02366888999999877622 11111 12358999999999999998733 2334
Q ss_pred HhhcCCCeEE-EeeccccCChHhHHHHHH-hHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccC-C---
Q 020549 227 LYKTRLPLVL-AFNKTDVAQHEFALEWMQ-DFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSG-A--- 299 (324)
Q Consensus 227 ~~~~~~p~il-v~NK~Dl~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g-~--- 299 (324)
..+.+.|.|+ ++||+|+++..+..++.+ +++.|+... .|. ...|++.-||+.- +
T Consensus 123 arqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y-------------------~f~gd~~Pii~gSal~ale~~~ 183 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY-------------------GFPGDDTPIIRGSALKALEGDA 183 (394)
T ss_pred hhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc-------------------CCCCCCcceeechhhhhhcCCc
Confidence 5667887655 899999999766554443 333333211 121 2468888888763 2
Q ss_pred ----ChHHHHHHHHHHHHH
Q 020549 300 ----GIEAYFKAVEESAQE 314 (324)
Q Consensus 300 ----gv~~l~~~i~~~~~~ 314 (324)
.|.+|++++..+++.
T Consensus 184 ~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 184 KWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred chHHHHHHHHHHHHhcCCC
Confidence 356777777766653
No 297
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.26 E-value=2.3e-11 Score=101.98 Aligned_cols=151 Identities=20% Similarity=0.266 Sum_probs=83.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcC----CCCCCcccccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGILTSL 145 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~ 145 (324)
+.++|.|+.|||||||+++++. ....+.++.++.++.+...+ | .+.+...+ .-.+||+||+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~i------D-------~~~l~~~~~~v~~l~~gcicc~- 65 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNI------D-------AELLQEDGVPVVELNNGCICCT- 65 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHH------H-------HHHHHTTT-EEEEECTTTESS--
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccccc------c-------hhhhcccceEEEEecCCCcccc-
Confidence 3588999999999999999997 45556666666555543211 1 11122222 2235788886
Q ss_pred cccChHHHHHHHHHHHHh-CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRA-DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
+...+...+..+.... ..++++|+.+.|..++... ......+.. ...+.++.|||+...... .....
T Consensus 66 --~~~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l----~~~~~~~~~~~~~~~iI~vVDa~~~~~~-~~~~~---- 134 (178)
T PF02492_consen 66 --LRDDLVEALRRLLREYEERPDRIIIETSGLADPAPL----ILQDPPLKEDFRLDSIITVVDATNFDEL-ENIPE---- 134 (178)
T ss_dssp --TTS-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGH----HHHSHHHHHHESESEEEEEEEGTTHGGH-TTHCH----
T ss_pred --cHHHHHHHHHHHHHhcCCCcCEEEECCccccccchh----hhccccccccccccceeEEecccccccc-ccchh----
Confidence 3333333333222111 2579999999998776332 001111211 234789999999664211 11111
Q ss_pred HHHHhhcCCCeEEEeeccccCChH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~ 247 (324)
....+....-++|+||+|+++.+
T Consensus 135 -~~~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 135 -LLREQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp -HHHHHHCT-SEEEEE-GGGHHHH
T ss_pred -hhhhcchhcCEEEEeccccCChh
Confidence 11233445569999999999876
No 298
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.4e-12 Score=104.69 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=104.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++++++|..|.||||++++.+...|...+.+++ ++...|..- . .+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~-----Gv~~~pl~f----~---------------tn--------- 55 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATL-----GVEVHPLLF----D---------------TN--------- 55 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcc-----eeEEeeeee----e---------------cc---------
Confidence 46889999999999999999999988887655433 222111110 0 00
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.+.+++..|||+|++.+.-.. .+. ..+..|.+++|.|.++........|...+. ..
T Consensus 56 ---------------~g~irf~~wdtagqEk~gglr-dgy-----yI~~qcAiimFdVtsr~t~~n~~rwhrd~~---rv 111 (216)
T KOG0096|consen 56 ---------------RGQIRFNVWDTAGQEKKGGLR-DGY-----YIQGQCAIIMFDVTSRFTYKNVPRWHRDLV---RV 111 (216)
T ss_pred ---------------cCcEEEEeeecccceeecccc-ccc-----EEecceeEEEeeeeehhhhhcchHHHHHHH---HH
Confidence 113678899999998862111 111 111224466677777666666666654331 22
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..++|+++++||.|..........+... ......++++||+++.|++.=|-.
T Consensus 112 -~~NiPiv~cGNKvDi~~r~~k~k~v~~~---------------------------rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 112 -RENIPIVLCGNKVDIKARKVKAKPVSFH---------------------------RKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred -hcCCCeeeeccceeccccccccccceee---------------------------ecccceeEEeecccccccccchHH
Confidence 2459999999999987654211111111 123578999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
+.+.+..
T Consensus 164 LarKl~G 170 (216)
T KOG0096|consen 164 LARKLTG 170 (216)
T ss_pred HhhhhcC
Confidence 9987753
No 299
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6e-11 Score=98.64 Aligned_cols=182 Identities=18% Similarity=0.298 Sum_probs=101.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
..|.++|+.++|||+|+-.|....... + ++++. +|.+...
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~----T-------vtSie-----------------------pn~a~~r------ 78 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG----T-------VTSIE-----------------------PNEATYR------ 78 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC----e-------eeeec-----------------------cceeeEe------
Confidence 459999999999999999998874331 1 11111 1111111
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH-
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL- 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~- 227 (324)
.+.-...++|.||+.+. ...+..++.. ..+-.+|||||+.....+.....+++..+-.-
T Consensus 79 -------------~gs~~~~LVD~PGH~rl------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~ 139 (238)
T KOG0090|consen 79 -------------LGSENVTLVDLPGHSRL------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDS 139 (238)
T ss_pred -------------ecCcceEEEeCCCcHHH------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhh
Confidence 11334789999997554 3345555543 24568999999988776665444444322221
Q ss_pred --hhcCCCeEEEeeccccCChH---hHHHHHH-hHHHHHHHHhcCcc-chhhHHH-----HHHH--hHHHHh-ccCceee
Q 020549 228 --YKTRLPLVLAFNKTDVAQHE---FALEWMQ-DFEVFQAAISSDHS-YTSTLTN-----SLSL--ALDEFY-KNLKSVG 292 (324)
Q Consensus 228 --~~~~~p~ilv~NK~Dl~~~~---~~~~~~~-~~~~l~~~~~~~~~-~~~~l~~-----~~~~--~~~~~~-~~~~iv~ 292 (324)
.....|++++.||.|+.... .++..++ ++..+.+.-+.-+. ...+.++ ..+. .+.+.. ..+.+.+
T Consensus 140 ~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e 219 (238)
T KOG0090|consen 140 RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAE 219 (238)
T ss_pred ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEee
Confidence 24678999999999997542 2222222 33333221110000 0000000 0000 011111 2357889
Q ss_pred eccccCCChHHHHHHHHHH
Q 020549 293 VSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 293 vSA~~g~gv~~l~~~i~~~ 311 (324)
.|+++| +++++.++|.+.
T Consensus 220 ~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 220 ASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccCcC-ChHHHHHHHHHh
Confidence 999998 899999988765
No 300
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.7e-11 Score=99.87 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=96.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+..+|+++|--||||||++..|-....... .+++ ..-++...
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTi---GfnVE~v~-------------------------------- 57 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTI---GFNVETVE-------------------------------- 57 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcc---ccceeEEE--------------------------------
Confidence 34557899999999999999999866544321 0000 00010000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.++..+.+||..||..+.. . -..++ ...+.+|||||+.+...-.. ....+. .
T Consensus 58 -----------------ykn~~f~vWDvGGq~k~R~--l----W~~Y~--~~t~~lIfVvDS~Dr~Ri~e-ak~eL~--~ 109 (181)
T KOG0070|consen 58 -----------------YKNISFTVWDVGGQEKLRP--L----WKHYF--QNTQGLIFVVDSSDRERIEE-AKEELH--R 109 (181)
T ss_pred -----------------EcceEEEEEecCCCccccc--c----hhhhc--cCCcEEEEEEeCCcHHHHHH-HHHHHH--H
Confidence 2377899999999976511 1 11111 23479999999976432211 111121 2
Q ss_pred HHhh---cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCCh
Q 020549 226 ILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 226 ~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv 301 (324)
.+.. .+.|+++..||.|+...-...++...+. +. .. ...-.+-.++|.+|+|+
T Consensus 110 ~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~-l~----------------------~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 110 MLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG-LH----------------------SLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred HHcCcccCCceEEEEechhhccccCCHHHHHhHhh-hh----------------------ccCCCCcEEeeccccccccH
Confidence 2222 4689999999999986532222222111 00 00 01245778999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQE 314 (324)
Q Consensus 302 ~~l~~~i~~~~~~ 314 (324)
.+-++.|...+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.25 E-value=3.9e-10 Score=102.57 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=84.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..++++|++|+||||++..|.......++.+.+++.|+.-. ........+.+..++ .++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~----------~a~eql~~~a~~~~i----~~~~~~~ 177 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA----------AAIEQLQVWGERVGV----PVIAQKE 177 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch----------hhHHHHHHHHHHcCc----eEEEeCC
Confidence 45778999999999999999999998777777888877665211 000001111112221 1111100
Q ss_pred ccCh--HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh------ccCCcEEEEEEcCCCCCCchhHHH
Q 020549 147 LFTT--KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA------STFPTVVTYVVDTPRSANPMTFMS 218 (324)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~------~~~~d~iv~vvD~~~~~~~~~~~~ 218 (324)
.... ..... .......+++++|+||||.... .......+.+..+ ...++-.++|+|+..+.......
T Consensus 178 ~~dpa~~v~~~--l~~~~~~~~D~ViIDTaGr~~~--~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a- 252 (318)
T PRK10416 178 GADPASVAFDA--IQAAKARGIDVLIIDTAGRLHN--KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA- 252 (318)
T ss_pred CCCHHHHHHHH--HHHHHhCCCCEEEEeCCCCCcC--CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-
Confidence 0000 01111 1222346789999999996553 2222223333221 23457889999998655433321
Q ss_pred hHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 219 NMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 219 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
......--+.-+|+||+|...
T Consensus 253 ------~~f~~~~~~~giIlTKlD~t~ 273 (318)
T PRK10416 253 ------KAFHEAVGLTGIILTKLDGTA 273 (318)
T ss_pred ------HHHHhhCCCCEEEEECCCCCC
Confidence 111111234579999999554
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=99.23 E-value=7.3e-10 Score=101.18 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=84.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..|+++|++|+||||++..|.......+..+.+++.|.... .....+..+.+.+++....+.... +
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~----------~a~eqL~~~a~~lgv~v~~~~~g~-d 206 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA----------GAIEQLEEHAERLGVKVIKHKYGA-D 206 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH----------HHHHHHHHHHHHcCCceecccCCC-C
Confidence 34678999999999999999999887655556666655442110 111122233334443211110000 0
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
........+..+. ..+.+++|+||||.... .......+....+...+|.+++|+|+..+.+..... ..
T Consensus 207 -p~~v~~~ai~~~~--~~~~DvVLIDTaGr~~~--~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-------~~ 274 (336)
T PRK14974 207 -PAAVAYDAIEHAK--ARGIDVVLIDTAGRMHT--DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-------RE 274 (336)
T ss_pred -HHHHHHHHHHHHH--hCCCCEEEEECCCccCC--cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-------HH
Confidence 0011122223332 34678999999996542 222333444444445578999999997654222211 22
Q ss_pred HhhcCCCeEEEeeccccCCh
Q 020549 227 LYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~ 246 (324)
....--.--+++||+|....
T Consensus 275 f~~~~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 275 FNEAVGIDGVILTKVDADAK 294 (336)
T ss_pred HHhcCCCCEEEEeeecCCCC
Confidence 22212235789999998653
No 303
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.22 E-value=6.5e-11 Score=111.48 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=100.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+..+|+|+|..|+|||||+.+|+...+...-. +....+....+ ++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-------~rl~~i~IPad------------------------vt-- 52 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-------RRLPRILIPAD------------------------VT-- 52 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccc-------ccCCccccCCc------------------------cC--
Confidence 3467889999999999999999999998864210 00111100000 00
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~ 224 (324)
.......|+||+.-.+- ...+.+.++++..-+++|-+|..+..+.. .+|..++...
T Consensus 53 -----------------Pe~vpt~ivD~ss~~~~------~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~ 109 (625)
T KOG1707|consen 53 -----------------PENVPTSIVDTSSDSDD------RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQL 109 (625)
T ss_pred -----------------cCcCceEEEecccccch------hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcc
Confidence 22456789999853332 22334444444334555556665555544 4787665321
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
. -...+.|+|+|+||+|....... ..+. ....++.+|.+--.+|.|||++-.++.++
T Consensus 110 ~-~~~~~~PVILvGNK~d~~~~~~~--s~e~--------------------~~~pim~~f~EiEtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 110 F-GDYHETPVILVGNKSDNGDNENN--SDEV--------------------NTLPIMIAFAEIETCIECSALTLANVSEL 166 (625)
T ss_pred c-CCCccCCEEEEeeccCCcccccc--chhH--------------------HHHHHHHHhHHHHHHHhhhhhhhhhhHhh
Confidence 1 01257999999999999865432 0000 00111223444456889999999999999
Q ss_pred HHHHHHHH
Q 020549 305 FKAVEESA 312 (324)
Q Consensus 305 ~~~i~~~~ 312 (324)
|....+.+
T Consensus 167 fYyaqKaV 174 (625)
T KOG1707|consen 167 FYYAQKAV 174 (625)
T ss_pred hhhhhhee
Confidence 99888764
No 304
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5.6e-11 Score=112.00 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-----CCchhHHHhHHHHHHHHhhcCC-CeEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-----ANPMTFMSNMLYACSILYKTRL-PLVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-----~~~~~~~~~~~~~~~~~~~~~~-p~ilv~ 238 (324)
...+.|+|+||+.+|-. .+.. ..+.+|++++|||++.+ +.+.....++. ..+...++ -+|+++
T Consensus 254 ~~~~tliDaPGhkdFi~-nmi~-------g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha---~llr~Lgi~qlivai 322 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIP-NMIS-------GASQADVAVLVVDASTGEFESGFDPGGQTREHA---LLLRSLGISQLIVAI 322 (603)
T ss_pred ceeEEEecCCCccccch-hhhc-------cccccceEEEEEECCcchhhhccCCCCchHHHH---HHHHHcCcceEEEEe
Confidence 56788999999656522 1111 12457999999999864 33333444433 33444444 458899
Q ss_pred eccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCChHH
Q 020549 239 NKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 239 NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~gv~~ 303 (324)
||+|+++ .++..++...+..++.+. ..|.+ .+.+||||+.+|+|+-.
T Consensus 323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~------------------~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 323 NKMDLVSWSQDRFEEIKNKLSSFLKES------------------CGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred ecccccCccHHHHHHHHHHHHHHHHHh------------------cCcccCCcceEecccccCCcccc
Confidence 9999986 455555555555443210 02222 35899999999999765
No 305
>PTZ00416 elongation factor 2; Provisional
Probab=99.21 E-value=9e-11 Score=119.80 Aligned_cols=67 Identities=25% Similarity=0.263 Sum_probs=49.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.|+||||+.+|.. .+...+ ..+|.+|+|||+..++..++.. .++.+...++|+|+++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~------~~~~al--~~~D~ailVvda~~g~~~~t~~-----~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSS------EVTAAL--RVTDGALVVVDCVEGVCVQTET-----VLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHH------HHHHHH--hcCCeEEEEEECCCCcCccHHH-----HHHHHHHcCCCEEEEEEChhhh
Confidence 45689999999888622 121111 4469999999999998877632 2245556679999999999997
No 306
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.21 E-value=3.1e-10 Score=104.42 Aligned_cols=168 Identities=20% Similarity=0.179 Sum_probs=95.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHH----HHHcCCCCCCccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV----MKQFNLGPNGGILTS 144 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 144 (324)
.+..+|.|+.|||||||+|+++... .+.++.++.++.+-.. +|- ..+.-... .+.+-.-.|||+||+
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~--~~~~iavi~Ne~G~~~------ID~-~ll~~~~~~~~~~~~v~el~nGCiCCs 74 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQNA--AGRRIAVIVNEFGDLG------IDG-EILKACGIEGCSEENIVELANGCICCT 74 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhcc--CCCcEEEEECCCcccc------chH-HHHhccccccCCcceEEEeCCCCcccc
Confidence 4568999999999999999999753 3455666555544322 210 01100000 012233468999997
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-----c-cCCcEEEEEEcCCCCCCch----
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-----S-TFPTVVTYVVDTPRSANPM---- 214 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-----~-~~~d~iv~vvD~~~~~~~~---- 214 (324)
+...+...+..+......++.++++|.|..++. .+.+.+. . ..-|.+|.|||+.......
T Consensus 75 ---~~~dl~~~l~~l~~~~~~~d~IvIEtsG~a~P~-------~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~ 144 (341)
T TIGR02475 75 ---VADDFIPTMTKLLARRQRPDHILIETSGLALPK-------PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAAD 144 (341)
T ss_pred ---CcHHHHHHHHHHHhccCCCCEEEEeCCCCCCHH-------HHHHHhcCccccceEEeeeEEEEEECchhhhhccccc
Confidence 445555554444333347899999999988762 2222221 1 1247899999997543210
Q ss_pred -hH----H---------HhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH
Q 020549 215 -TF----M---------SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (324)
Q Consensus 215 -~~----~---------~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 257 (324)
.. + ..... ....+....-+||+||+|+++.+........++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~--~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~ 199 (341)
T TIGR02475 145 PDALDAQRAADDNLDHETPLEE--LFEDQLACADLVILNKADLLDAAGLARVRAEIA 199 (341)
T ss_pred hhhhhhhccccccccccchHHH--HHHHHHHhCCEEEEeccccCCHHHHHHHHHHHH
Confidence 00 0 00000 012333445599999999999876544444443
No 307
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.21 E-value=8.5e-11 Score=120.19 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.|+||||+.+|.. .+...+ ..+|.+++|||+.+++..++.. .++.+...++|+|+++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~------e~~~al--~~~D~ailVvda~~Gv~~~t~~-----~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSS------EVTAAL--RITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHH------HHHHHH--hhcCEEEEEEECCCCCcccHHH-----HHHHHHHCCCCEEEEEECCccc
Confidence 45678999999888732 121111 3469999999999999877622 2345566789999999999998
No 308
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.20 E-value=4.3e-10 Score=103.14 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.+|+|+|.||||||||+|+|++..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999999875
No 309
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.19 E-value=1.3e-10 Score=105.84 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.+..+|.|+.|||||||+|+++... .+.++.++.++.+.. .+| ...+. ..-..+-.-.|||+||+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~--~~~riaVi~NEfG~v------~iD-~~ll~--~~~~~v~eL~~GCiCCs--- 68 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEV------SVD-DQLIG--DRATQIKTLTNGCICCS--- 68 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc--cCCcccccccCcCCc------ccc-HHHHh--CcCceEEEECCCEEEEc---
Confidence 34678999999999999999999753 344556655554322 122 00010 00011223457899997
Q ss_pred cChHHHHHHHHH-HHHh---CCCCEEEEeCCCCcchhhhhhhHHHH-H-HHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 148 FTTKFDEVISLI-ERRA---DHLDYVLVDTPGQIEIFTWSASGAII-T-EAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 148 ~~~~~~~~~~~~-~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~-~-~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
+...+...+..+ .... ..++.++++|.|..++.. ....+ . ..+.. ..-+.++.|||+.......+....
T Consensus 69 ~~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~---i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~- 144 (318)
T PRK11537 69 RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI- 144 (318)
T ss_pred cCchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHH---HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHH-
Confidence 334443333322 2111 258999999999877521 11111 0 01111 123789999999765433221110
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChH
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 247 (324)
...+....-+||+||+|+++..
T Consensus 145 -----~~~Qi~~AD~IvlnK~Dl~~~~ 166 (318)
T PRK11537 145 -----AQSQVGYADRILLTKTDVAGEA 166 (318)
T ss_pred -----HHHHHHhCCEEEEeccccCCHH
Confidence 1123334459999999999753
No 310
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.19 E-value=7.2e-11 Score=118.97 Aligned_cols=70 Identities=24% Similarity=0.183 Sum_probs=49.1
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+.+.++.||||||+.+|.. .+...+ ..+|++++|+|+..++..++. ..+......++|.++|+||+|
T Consensus 83 ~~~~~i~liDTPG~~~f~~------~~~~al--~~aD~~llVvda~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGG------DVTRAM--RAVDGAIVVVCAVEGVMPQTE-----TVLRQALKENVKPVLFINKVD 149 (720)
T ss_pred CCceEEEEEeCCCccccHH------HHHHHH--HhcCEEEEEEecCCCCCccHH-----HHHHHHHHcCCCEEEEEEChh
Confidence 3467899999999988621 122222 346999999999988766542 112334456789999999999
Q ss_pred cCC
Q 020549 243 VAQ 245 (324)
Q Consensus 243 l~~ 245 (324)
+..
T Consensus 150 ~~~ 152 (720)
T TIGR00490 150 RLI 152 (720)
T ss_pred ccc
Confidence 874
No 311
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.6e-10 Score=102.12 Aligned_cols=215 Identities=15% Similarity=0.150 Sum_probs=121.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+++++|-..+|||||+.-|.......+.--+-.+.-...+++.-+.+..+. .+-+|+...+..+. ++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis--------~evlGFd~~g~vVN----Y~ 235 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSIS--------NEVLGFDNRGKVVN----YA 235 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccc--------hhcccccccccccc----hh
Confidence 5799999999999999999988766654322222221112222111110000 11233333332222 11
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
..+ ..+.+.. ....-+.|+|.+|++++...... .+..--.+.+++||.+..+..+.+ .+++.....
T Consensus 236 ~~~--taEEi~e-~SSKlvTfiDLAGh~kY~~TTi~------gLtgY~Ph~A~LvVsA~~Gi~~tT-----rEHLgl~~A 301 (591)
T KOG1143|consen 236 QNM--TAEEIVE-KSSKLVTFIDLAGHAKYQKTTIH------GLTGYTPHFACLVVSADRGITWTT-----REHLGLIAA 301 (591)
T ss_pred hcc--cHHHHHh-hhcceEEEeecccchhhheeeee------ecccCCCceEEEEEEcCCCCcccc-----HHHHHHHHH
Confidence 110 0111111 12345679999998776211111 111223589999999999987765 334466677
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc--CccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
.++|++++++|+|+.++.......+++..+++...- .|.....-.+++....+.- ..-.||+.+|..+|+|++-|..
T Consensus 302 L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 302 LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 899999999999999987666677777766654422 2222222222222111111 2236999999999999988776
Q ss_pred HHHH
Q 020549 307 AVEE 310 (324)
Q Consensus 307 ~i~~ 310 (324)
.|.-
T Consensus 382 fLn~ 385 (591)
T KOG1143|consen 382 FLNC 385 (591)
T ss_pred HHhh
Confidence 6643
No 312
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.1e-10 Score=101.95 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=64.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+++|+|.||||||||.|+++..... ..+||++| +.||-|+..-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~-------------~aNYPF~T------------------IePN~Giv~v~--- 47 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAE-------------IANYPFCT------------------IEPNVGVVYVP--- 47 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCcc-------------ccCCCccc------------------ccCCeeEEecC---
Confidence 467999999999999999999987532 56777776 23333333210
Q ss_pred ChHHHHHHHHHH--HHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCC
Q 020549 149 TTKFDEVISLIE--RRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTP 208 (324)
Q Consensus 149 ~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~ 208 (324)
......+.++.. .......+.|+|.||+..-...+ .++..++..++. +|.++.|||+.
T Consensus 48 d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRe--vdaI~hVVr~f 108 (372)
T COG0012 48 DCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIRE--VDAIIHVVRCF 108 (372)
T ss_pred chHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhh--cCeEEEEEEec
Confidence 000111000000 00113467899999987754333 367777666654 58999999985
No 313
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.15 E-value=2.9e-10 Score=100.02 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..+.+|+|+|.+|||||||+|+|++...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4568899999999999999999999754
No 314
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.14 E-value=4.6e-10 Score=100.43 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
...+|+++|.+|+||||++|+|++...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v 63 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERI 63 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467899999999999999999998754
No 315
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.1e-09 Score=93.46 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=77.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC-------cccccccccccch------------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFAANIDI------------------ 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~------------------ 120 (324)
..++.+++|+||+|||||||++.++|...+..+.+.+.+... .+...|....+|-
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence 356678999999999999999999998777766666654421 1222233222321
Q ss_pred --------hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+...+.++++..++..... ..+..+|.|+.|++-++++...+++++++|.|=
T Consensus 107 g~~~~~~~~d~~~v~~aL~~Vgm~~~~~--r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 107 GWFRRLNKKDKEKVDEALERVGMEDLRD--RQIGELSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred cccccccHHHHHHHHHHHHHcCchhhhC--CcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 12345667777777764322 333469999999999999999999999999984
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.12 E-value=4.7e-09 Score=93.61 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=83.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..|+++|++|+||||++..|.......++.+.++..|+... ........+.+..++..-...... +
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~----------~a~~ql~~~~~~~~i~~~~~~~~~-d 138 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA----------AAIEQLEEWAKRLGVDVIKQKEGA-D 138 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH----------HHHHHHHHHHHhCCeEEEeCCCCC-C
Confidence 44678999999999999999999987766667788876664211 111122233333332110000000 0
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc------cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~------~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
........+..+ ...+.+++|+||||.... .......+.+.... ..+|-+++|+|+..+.......
T Consensus 139 -p~~~~~~~l~~~--~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~--- 210 (272)
T TIGR00064 139 -PAAVAFDAIQKA--KARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA--- 210 (272)
T ss_pred -HHHHHHHHHHHH--HHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH---
Confidence 001111112111 245789999999996543 11222222222221 2368899999997543322211
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCCh
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
. ...... -+.-+|+||+|....
T Consensus 211 ~---~f~~~~-~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 211 K---VFNEAV-GLTGIILTKLDGTAK 232 (272)
T ss_pred H---HHHhhC-CCCEEEEEccCCCCC
Confidence 1 111122 245889999998653
No 317
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.4e-10 Score=87.50 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
++.++++||..|+..... --+.++ +..|.++||||..+...-...-.+....+..-.-.+..+++++||.|.
T Consensus 60 KNLk~~vwdLggqtSirP------yWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~ 131 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRP------YWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY 131 (182)
T ss_pred ccccceeeEccCcccccH------HHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence 477899999999755310 111122 234799999998765432211111111111111234567889999998
Q ss_pred CChHhHHHHHHhHH--HHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFE--VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 244 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
...-...+....+. .|. ..-..||.+||.+|+|+++.+++|.+.+.+
T Consensus 132 ~~~~t~~E~~~~L~l~~Lk------------------------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 132 SGALTRSEVLKMLGLQKLK------------------------DRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hhhhhHHHHHHHhChHHHh------------------------hheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 76543333332221 111 123689999999999999999999987754
No 318
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.09 E-value=4e-09 Score=98.84 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc-ccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL-TSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 145 (324)
.++..|+++|++||||||++..|.......+..+.++..|+... + .-+.++.++-.. ++. ...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~----a----------A~eQLk~~a~~~--~vp~~~~ 161 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA----G----------AFDQLKQNATKA--RIPFYGS 161 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch----h----------HHHHHHHHhhcc--CCeEEee
Confidence 34678999999999999999999877665566777766554221 0 011111111110 110 000
Q ss_pred cccCh--H-HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 146 NLFTT--K-FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 146 ~~~~~--~-~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
..-.. . ....+..+. ..+.+++|+||||.... .......+.+......++.++||+|+..+.......
T Consensus 162 ~~~~dp~~i~~~~l~~~~--~~~~DvViIDTaGr~~~--d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a----- 232 (429)
T TIGR01425 162 YTESDPVKIASEGVEKFK--KENFDIIIVDTSGRHKQ--EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA----- 232 (429)
T ss_pred cCCCCHHHHHHHHHHHHH--hCCCCEEEEECCCCCcc--hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH-----
Confidence 00000 0 011122222 34789999999996543 233444555554445678999999998765443222
Q ss_pred HHHHHhhcCCCeEEEeeccccCC
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+...--+.-+|+||+|-..
T Consensus 233 --~~F~~~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 233 --KAFKDSVDVGSVIITKLDGHA 253 (429)
T ss_pred --HHHHhccCCcEEEEECccCCC
Confidence 222222235688999999653
No 319
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.09 E-value=1.5e-09 Score=98.01 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=81.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------cccccccc----------c----hh-
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAANI----------D----IR- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~----------~----~~- 121 (324)
.+++..++++|++|||||||++.|++...+..+.+.+.+.++... ..+..+.+ + ++
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 456778999999999999999999999999888888887665431 11111111 0 11
Q ss_pred -----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.++|.... -.....||.||++++.++.+...+++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 108 LSKEEAEERIEELLELFGLEDKA--NKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred CChhHHHHHHHHHHHHcCCchhh--CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 123567889999998733 2234469999999999999999999999999884
No 320
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.08 E-value=2.9e-09 Score=89.39 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=81.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc------------------cccccccc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT------------------LPFAANID-------- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~------------------~~~~~~~~-------- 119 (324)
..++.+++|+||+|+|||||+++|-+......+.+.+.+.+..... +|.-+-.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4578889999999999999999999998888888888775442210 11111000
Q ss_pred ------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 120 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
-.......++++.+|+......++. ++|.|++|++.++++...++++.++|.|-.
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--qLSGGQqQRVAIARALaM~P~vmLFDEPTS 165 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTS 165 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--ccCcHHHHHHHHHHHHcCCCCEEeecCCcc
Confidence 0112244577889999887666654 799999999999999999999999999974
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.06 E-value=2.9e-09 Score=91.76 Aligned_cols=177 Identities=13% Similarity=0.153 Sum_probs=90.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
+|+|+|.+|+||||++|.|++....... ....+.+....... + .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~----------~~~~~~t~~~~~~~-----------------~---~------ 45 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSG----------SSAKSVTQECQKYS-----------------G---E------ 45 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS------------TTTSS--SS-EEEE-----------------E---E------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeec----------cccCCcccccceee-----------------e---e------
Confidence 6899999999999999999987643210 00000010000000 0 0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.++||||..+.... ......+.+.+.. ...++++||+... .+...+. ..+..+..+
T Consensus 46 ------------~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~ 110 (212)
T PF04548_consen 46 ------------VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEI 110 (212)
T ss_dssp ------------ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHH
T ss_pred ------------ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHH--HHHHHHHHH
Confidence 23678999999998664221 1122334443332 2358999999887 4543331 112111222
Q ss_pred hh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc------cCC
Q 020549 228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV------SGA 299 (324)
Q Consensus 228 ~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~------~g~ 299 (324)
-. .-.-++||++.+|........+.++.-. ...+..++... +.+++.++.+ ...
T Consensus 111 FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~----------------~~~l~~li~~c--~~R~~~f~n~~~~~~~~~~ 172 (212)
T PF04548_consen 111 FGEEIWKHTIVVFTHADELEDDSLEDYLKKES----------------NEALQELIEKC--GGRYHVFNNKTKDKEKDES 172 (212)
T ss_dssp HCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHH----------------HHHHHHHHHHT--TTCEEECCTTHHHHHHHHH
T ss_pred ccHHHHhHhhHHhhhccccccccHHHHHhccC----------------chhHhHHhhhc--CCEEEEEeccccchhhhHH
Confidence 11 2245788999999887665443333111 00011111111 2355656655 335
Q ss_pred ChHHHHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQEFM 316 (324)
Q Consensus 300 gv~~l~~~i~~~~~~~~ 316 (324)
.+.+|+..|.+.+.+..
T Consensus 173 qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 173 QVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 68888888888876644
No 322
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=3.8e-09 Score=90.50 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=77.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc------------------chhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI------------------DIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------~~~~----- 122 (324)
-+++..|+|+|++|||||||+|.+.+-..++.+.+.+.+.+....+......+ .+.+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence 45778899999999999999999999988888777777654432211111100 0111
Q ss_pred -----------HHHHHHHHHHcCCCCCCc-ccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcc
Q 020549 123 -----------TIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE 178 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~ 178 (324)
......+++.+++..... ..+ .++|.|++|++.++++...+++++|.|.| |--+
T Consensus 108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p--~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD 174 (226)
T COG1136 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP--SELSGGQQQRVAIARALINNPKIILADEPTGNLD 174 (226)
T ss_pred HHHcCCChhHHHHHHHHHHHhcCChhhhccCCc--hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence 113445566667764333 222 36999999999999999999999999999 4434
No 323
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.6e-10 Score=99.60 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=83.7
Q ss_pred CEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 167 DYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
.+.|+|+||+ +. .|...+.. +..|.+++++.+.++.... +..+.+.....+.- +-++++-||+|++.
T Consensus 126 HVSfVDCPGH-Di--------LMaTMLnGaAvmDaalLlIA~NEsCPQP-QTsEHLaaveiM~L--khiiilQNKiDli~ 193 (466)
T KOG0466|consen 126 HVSFVDCPGH-DI--------LMATMLNGAAVMDAALLLIAGNESCPQP-QTSEHLAAVEIMKL--KHIIILQNKIDLIK 193 (466)
T ss_pred EEEeccCCch-HH--------HHHHHhcchHHhhhhhhhhhcCCCCCCC-chhhHHHHHHHhhh--ceEEEEechhhhhh
Confidence 5679999994 32 12222221 2247888888887765332 23344444444433 34688999999999
Q ss_pred hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHHHhhhc
Q 020549 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKY 321 (324)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~~~~~ 321 (324)
.+...+..+++..+... ...+++|++|+||--+.||+.+.++|++.+|...++|.+
T Consensus 194 e~~A~eq~e~I~kFi~~--------------------t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s 249 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQG--------------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTS 249 (466)
T ss_pred HHHHHHHHHHHHHHHhc--------------------cccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCC
Confidence 88776666666644432 234578999999999999999999999999877776643
No 324
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.02 E-value=2.2e-09 Score=88.71 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=42.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 241 (324)
...+.|+||||...... .......+++ ..+|+++||+++...+...+ . .............+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~--~~~~~~~~~~--~~~d~vi~V~~~~~~~~~~~-~---~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNS--EHTEITEEYL--PKADVVIFVVDANQDLTESD-M---EFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHT--TTSHHHHHHH--STTEEEEEEEETTSTGGGHH-H---HHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchh--hhHHHHHHhh--ccCCEEEEEeccCcccchHH-H---HHHHHHhcCCCCeEEEEEcCC
Confidence 46789999999865321 1223344444 56799999999988665443 1 111133444555689999995
No 325
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.00 E-value=8.1e-10 Score=87.13 Aligned_cols=170 Identities=17% Similarity=0.170 Sum_probs=98.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
-..+|+++|++-.|||||+-.+.+..+...+.. +. |+.+-...
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q--------------~~-----------------------GvN~mdkt 61 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQ--------------TL-----------------------GVNFMDKT 61 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHH--------------Hh-----------------------CccceeeE
Confidence 357899999999999999999988765432110 00 11110000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
++- .+....+.|||..|++++...-...+ ..+-+++|+.|-.....- ....+....++..
T Consensus 62 ~~i-----------~~t~IsfSIwdlgG~~~~~n~lPiac--------~dsvaIlFmFDLt~r~TL-nSi~~WY~QAr~~ 121 (205)
T KOG1673|consen 62 VSI-----------RGTDISFSIWDLGGQREFINMLPIAC--------KDSVAILFMFDLTRRSTL-NSIKEWYRQARGL 121 (205)
T ss_pred EEe-----------cceEEEEEEEecCCcHhhhccCceee--------cCcEEEEEEEecCchHHH-HHHHHHHHHHhcc
Confidence 100 03355678999999988622111111 223578888887654322 1222224444445
Q ss_pred hhcCCCeEEEeeccccC---ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 228 YKTRLPLVLAFNKTDVA---QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
++..+| |+|++|-|+. +++-.......-+..++ .-+++.+++|+....||..+
T Consensus 122 NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk-----------------------~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 122 NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAK-----------------------VMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHH-----------------------HhCCcEEEeeccccccHHHH
Confidence 555566 7899999964 22211112112121111 12578999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 020549 305 FKAVEESAQEFMET 318 (324)
Q Consensus 305 ~~~i~~~~~~~~~~ 318 (324)
|..+...+-.-+|.
T Consensus 178 FK~vlAklFnL~~t 191 (205)
T KOG1673|consen 178 FKIVLAKLFNLPWT 191 (205)
T ss_pred HHHHHHHHhCCcee
Confidence 99988776554443
No 326
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.99 E-value=4e-09 Score=83.05 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=91.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|--++|||+++..|+......+. ++.+++ .+.. .+.+.+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~--------------e~~pTi--EDiY--------------~~svet-- 54 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGT--------------ELHPTI--EDIY--------------VASVET-- 54 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCC--------------ccccch--hhhe--------------eEeeec--
Confidence 35678999999999999999998876443321 111110 0000 000000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEE--cCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVV--DTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vv--D~~~~~~~~~~~~~~~~~~ 224 (324)
..+..-.+.|.||+|.... ...+-+... ..+|..|+|. +..++++....+...+.
T Consensus 55 --------------~rgarE~l~lyDTaGlq~~------~~eLprhy~-q~aDafVLVYs~~d~eSf~rv~llKk~Id-- 111 (198)
T KOG3883|consen 55 --------------DRGAREQLRLYDTAGLQGG------QQELPRHYF-QFADAFVLVYSPMDPESFQRVELLKKEID-- 111 (198)
T ss_pred --------------CCChhheEEEeecccccCc------hhhhhHhHh-ccCceEEEEecCCCHHHHHHHHHHHHHHh--
Confidence 0011346789999997553 112222222 2245545544 44455554443333231
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
.......+|+++++||+|+.++.+.. +...... . .+-+..++++|.....+-+
T Consensus 112 k~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa-----------------~---------rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 112 KHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA-----------------K---------REKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hccccccccEEEEechhhcccchhcCHHHHHHHH-----------------h---------hhheeEEEEEeccchhhhh
Confidence 11223568999999999997654321 1111000 0 1346788999999998888
Q ss_pred HHHHHHHHH
Q 020549 304 YFKAVEESA 312 (324)
Q Consensus 304 l~~~i~~~~ 312 (324)
-|-.+...+
T Consensus 166 pf~~l~~rl 174 (198)
T KOG3883|consen 166 PFTYLASRL 174 (198)
T ss_pred HHHHHHHhc
Confidence 888887765
No 327
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.8e-09 Score=82.76 Aligned_cols=161 Identities=18% Similarity=0.248 Sum_probs=96.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|..+|-.++||||++-.|.-...... + | ++.+.+.. ++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~----i----------p-TvGFnvet-------------------Vt---- 57 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT----I----------P-TVGFNVET-------------------VT---- 57 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc----c----------c-ccceeEEE-------------------EE----
Confidence 456799999999999999999876543321 0 0 00111000 00
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI 226 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~~ 226 (324)
.++..+..||..|+.... ..-..++. ....++||+|+..+ +..+...+++.. +..
T Consensus 58 ---------------ykN~kfNvwdvGGqd~iR------plWrhYy~--gtqglIFV~Dsa~~-dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 58 ---------------YKNVKFNVWDVGGQDKIR------PLWRHYYT--GTQGLIFVVDSADR-DRIEEARNELHRIIND 113 (180)
T ss_pred ---------------eeeeEEeeeeccCchhhh------HHHHhhcc--CCceEEEEEeccch-hhHHHHHHHHHHHhCC
Confidence 237789999999986641 11112222 23588999999877 444433333321 111
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
..-.+.|+++..||-|+...-..+++...++ |.+ + ....--+.|+||.+|.|+.+=+.
T Consensus 114 ~em~~~~~LvlANkQDlp~A~~pqei~d~le-Le~-~--------------------r~~~W~vqp~~a~~gdgL~egls 171 (180)
T KOG0071|consen 114 REMRDAIILILANKQDLPDAMKPQEIQDKLE-LER-I--------------------RDRNWYVQPSCALSGDGLKEGLS 171 (180)
T ss_pred HhhhcceEEEEecCcccccccCHHHHHHHhc-ccc-c--------------------cCCccEeeccccccchhHHHHHH
Confidence 1224678999999999987644433332221 111 0 01123578999999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.|...+
T Consensus 172 wlsnn~ 177 (180)
T KOG0071|consen 172 WLSNNL 177 (180)
T ss_pred HHHhhc
Confidence 887754
No 328
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.99 E-value=1.4e-08 Score=83.48 Aligned_cols=111 Identities=19% Similarity=0.304 Sum_probs=83.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---ccccc-ccc----------------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAA-NID---------------------- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---~~~~~-~~~---------------------- 119 (324)
-.++..+-++|++|||||||++.|.+...++.+.+.+.+.|..... +|+-. .++
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 3567789999999999999999999999999888888777654321 11111 110
Q ss_pred -h----h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcc
Q 020549 120 -I----R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE 178 (324)
Q Consensus 120 -~----~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~ 178 (324)
+ + -+.++.++++..||.......++ ++|.|.+|++.++++.-..+.+++-|.| |-.+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD 169 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPS--QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCcc--ccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence 0 0 11256788999999887766665 7999999999999999999999999998 4434
No 329
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.97 E-value=7.2e-09 Score=88.99 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=96.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------------ccccc---ccc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------LPFAA---NID------ 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------------~~~~~---~~~------ 119 (324)
-..+..++++|++||||||+++.+-+...++.+.+.+.+.+....+ +|.-+ ++.
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~ 103 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL 103 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc
Confidence 3567789999999999999999998887788888887776543211 01111 110
Q ss_pred ----hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHHHh
Q 020549 120 ----IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFA 194 (324)
Q Consensus 120 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~~~ 194 (324)
-+-..++.++|..++|.+..-.-...+++|.|++|++..+++...++.+++.|.| |-.++-.|..+...+.+.-
T Consensus 104 ~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq- 182 (309)
T COG1125 104 GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ- 182 (309)
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHH-
Confidence 0112257899999999985333333457999999999999999999999999999 6667666666555444332
Q ss_pred ccCCcEEEEEE
Q 020549 195 STFPTVVTYVV 205 (324)
Q Consensus 195 ~~~~d~iv~vv 205 (324)
....-.+|||-
T Consensus 183 ~~l~kTivfVT 193 (309)
T COG1125 183 KELGKTIVFVT 193 (309)
T ss_pred HHhCCEEEEEe
Confidence 23334555654
No 330
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.96 E-value=5e-09 Score=89.40 Aligned_cols=91 Identities=20% Similarity=0.357 Sum_probs=55.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.-.+|+++|.|.+|||||+..++..... ...+.+++-.-+. |...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Se-------------aA~yeFTTLtcIp------------------Gvi~---- 105 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSE-------------AASYEFTTLTCIP------------------GVIH---- 105 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhh-------------hhceeeeEEEeec------------------ceEE----
Confidence 3467999999999999999999875433 2223333300000 1111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhc-cCCcEEEEEEcCCCCC
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFAS-TFPTVVTYVVDTPRSA 211 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~-~~~d~iv~vvD~~~~~ 211 (324)
..+..++++|.||+.+....+. .+. +.++. .-+|+++.|+|+..+-
T Consensus 106 ---------------y~ga~IQllDLPGIieGAsqgkGRGR---QviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 106 ---------------YNGANIQLLDLPGIIEGASQGKGRGR---QVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred ---------------ecCceEEEecCcccccccccCCCCCc---eEEEEeecccEEEEEecCCcch
Confidence 2367899999999987532211 111 11111 2369999999997653
No 331
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.94 E-value=2e-09 Score=83.65 Aligned_cols=160 Identities=20% Similarity=0.216 Sum_probs=92.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc-ccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL-TSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 145 (324)
++.+++.++|--|||||||++.|.+..... +. -+. |.. .++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h------------lt---pT~-----------------------GFn~k~v 56 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH------------LT---PTN-----------------------GFNTKKV 56 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh------------cc---ccC-----------------------CcceEEE
Confidence 567899999999999999999998764331 10 000 110 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh-hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH-HH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF-TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~-~~ 223 (324)
++ ...+.+.+||..|+.... +|+.-. ...|.++||||+.+...-. ...+.+ +.
T Consensus 57 ~~---------------~g~f~LnvwDiGGqr~IRpyWsNYy---------envd~lIyVIDS~D~krfe-E~~~el~EL 111 (185)
T KOG0074|consen 57 EY---------------DGTFHLNVWDIGGQRGIRPYWSNYY---------ENVDGLIYVIDSTDEKRFE-EISEELVEL 111 (185)
T ss_pred ee---------------cCcEEEEEEecCCccccchhhhhhh---------hccceEEEEEeCCchHhHH-HHHHHHHHH
Confidence 00 235789999999986531 122221 2248999999965432111 111111 11
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+..-+-..+|+.+..||-|++......+....+.- . .+ ......|-.+||.+++|+.+
T Consensus 112 leeeKl~~vpvlIfankQdlltaa~~eeia~klnl--~------------------~l--rdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 112 LEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNL--A------------------GL--RDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred hhhhhhhccceeehhhhhHHHhhcchHHHHHhcch--h------------------hh--hhceEEeeeCccccccCccC
Confidence 22233457899999999998865433322221110 0 00 01234677899999999887
Q ss_pred HHHHHHHH
Q 020549 304 YFKAVEES 311 (324)
Q Consensus 304 l~~~i~~~ 311 (324)
=.+.++..
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 76666544
No 332
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.94 E-value=1.3e-08 Score=86.42 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=80.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
|.+|+++|++||||||.+-.|.......+..+.++..|... .+. .+ ....+.+.+++.. +.. ..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----~ga----~e--QL~~~a~~l~vp~-----~~~-~~ 64 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----IGA----VE--QLKTYAEILGVPF-----YVA-RT 64 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----THH----HH--HHHHHHHHHTEEE-----EES-ST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----ccH----HH--HHHHHHHHhcccc-----chh-hc
Confidence 45799999999999999999988766557777776555321 011 11 1122222222211 000 00
Q ss_pred ChHHH----HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 149 TTKFD----EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 149 ~~~~~----~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..... +.+... ...+.+++|+||||.... .......+.+.+.....+-+++|+++..+....... .
T Consensus 65 ~~~~~~~~~~~l~~~--~~~~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~---~--- 134 (196)
T PF00448_consen 65 ESDPAEIAREALEKF--RKKGYDLVLIDTAGRSPR--DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA---L--- 134 (196)
T ss_dssp TSCHHHHHHHHHHHH--HHTTSSEEEEEE-SSSST--HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH---H---
T ss_pred chhhHHHHHHHHHHH--hhcCCCEEEEecCCcchh--hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH---H---
Confidence 00111 112222 244689999999996543 222333444444444568899999997654333322 1
Q ss_pred HHHhhcCCCeEEEeeccccCCh
Q 020549 225 SILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
......+. -=++++|.|-...
T Consensus 135 ~~~~~~~~-~~lIlTKlDet~~ 155 (196)
T PF00448_consen 135 AFYEAFGI-DGLILTKLDETAR 155 (196)
T ss_dssp HHHHHSST-CEEEEESTTSSST
T ss_pred HHhhcccC-ceEEEEeecCCCC
Confidence 22222333 3577999997653
No 333
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=7.3e-09 Score=91.97 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=74.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEeeccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~D 242 (324)
...+-=+|+||+.+|.. ..+.. +.-|.+|+||.+.++..+++.- ++...++.+++. ++.+||.|
T Consensus 116 ~RhYaH~DCPGHADYIK---------NMItGaaqMDGaILVVaatDG~MPQTrE-----HlLLArQVGV~~ivvfiNKvD 181 (449)
T KOG0460|consen 116 KRHYAHTDCPGHADYIK---------NMITGAAQMDGAILVVAATDGPMPQTRE-----HLLLARQVGVKHIVVFINKVD 181 (449)
T ss_pred ccccccCCCCchHHHHH---------HhhcCccccCceEEEEEcCCCCCcchHH-----HHHHHHHcCCceEEEEEeccc
Confidence 45666799999888622 11111 3348999999999999998732 334456677665 55799999
Q ss_pred cCChHhHHHHHH-hHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeecccc---CC-------ChHHHHHHHHH
Q 020549 243 VAQHEFALEWMQ-DFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVS---GA-------GIEAYFKAVEE 310 (324)
Q Consensus 243 l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~---g~-------gv~~l~~~i~~ 310 (324)
++++.+..++.+ ++++|+... .|. ...|+|.-||+- |. .|..|++.+..
T Consensus 182 ~V~d~e~leLVEmE~RElLse~-------------------gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDs 242 (449)
T KOG0460|consen 182 LVDDPEMLELVEMEIRELLSEF-------------------GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDS 242 (449)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-------------------CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhc
Confidence 997766655554 444443322 121 247899888764 32 25667777766
Q ss_pred HHHH
Q 020549 311 SAQE 314 (324)
Q Consensus 311 ~~~~ 314 (324)
++|.
T Consensus 243 yip~ 246 (449)
T KOG0460|consen 243 YIPT 246 (449)
T ss_pred cCCC
Confidence 6654
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.92 E-value=2.7e-09 Score=94.86 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEccCCCcHHHHHHHHHhccc
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
|+|+|.||||||||+|+|++...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~ 23 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA 23 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC
Confidence 58999999999999999998755
No 335
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.5e-09 Score=100.29 Aligned_cols=134 Identities=19% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCc-cccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSLN 146 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 146 (324)
+...|+++-+-.+||||+-.+++...........+.+. ++..| .-+..+..|+-.+.+ ..+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---------~a~md------~m~~er~rgITiqSAAt~~~-- 100 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---------GATMD------SMELERQRGITIQSAATYFT-- 100 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccC---------ceeee------hHHHHHhcCceeeeceeeee--
Confidence 44568999999999999999887653322111111111 11000 111122233332222 2232
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
+.+..+.||||||+.+|.. ...+ .+ ..-|.+|+++|+..+++.++. ...+.
T Consensus 101 ----------------w~~~~iNiIDTPGHvDFT~--EVeR----AL--rVlDGaVlvl~aV~GVqsQt~-----tV~rQ 151 (721)
T KOG0465|consen 101 ----------------WRDYRINIIDTPGHVDFTF--EVER----AL--RVLDGAVLVLDAVAGVESQTE-----TVWRQ 151 (721)
T ss_pred ----------------eccceeEEecCCCceeEEE--Eehh----hh--hhccCeEEEEEcccceehhhH-----HHHHH
Confidence 5578999999999999832 2221 11 123888999999999988863 23356
Q ss_pred HhhcCCCeEEEeeccccCChH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~ 247 (324)
+++.++|.|..+||+|.....
T Consensus 152 ~~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 152 MKRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred HHhcCCCeEEEEehhhhcCCC
Confidence 777899999999999998754
No 336
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.7e-09 Score=83.89 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=91.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
-++..++.++|--|||||||++.|-.+..... +.+..|+.+.
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~---------------------------------- 58 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEE---------------------------------- 58 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccccccc----CCCcCCChHH----------------------------------
Confidence 34667899999999999999999977644321 1111111110
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
++ ..+..+.-+|..|+... ...-.+++ ..+|.+||+||+.+.-.-..- ...+..+-
T Consensus 59 --l~-------------Ig~m~ftt~DLGGH~qA------rr~wkdyf--~~v~~iv~lvda~d~er~~es-~~eld~ll 114 (193)
T KOG0077|consen 59 --LS-------------IGGMTFTTFDLGGHLQA------RRVWKDYF--PQVDAIVYLVDAYDQERFAES-KKELDALL 114 (193)
T ss_pred --he-------------ecCceEEEEccccHHHH------HHHHHHHH--hhhceeEeeeehhhHHHhHHH-HHHHHHHH
Confidence 00 23678889999996442 11122222 125789999998543221111 11111111
Q ss_pred HH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHH--HhHHHHhccCceeeeccccCCChH
Q 020549 226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLS--LALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 226 ~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
.. .-...|+++.+||+|........+..-.+ -+.... ...+ ..-........++.||...+.|..
T Consensus 115 ~~e~la~vp~lilgnKId~p~a~se~~l~~~l-~l~~~t-----------~~~~~v~~~~~~~rp~evfmcsi~~~~gy~ 182 (193)
T KOG0077|consen 115 SDESLATVPFLILGNKIDIPYAASEDELRFHL-GLSNFT-----------TGKGKVNLTDSNVRPLEVFMCSIVRKMGYG 182 (193)
T ss_pred hHHHHhcCcceeecccccCCCcccHHHHHHHH-HHHHHh-----------cccccccccCCCCCeEEEEEEEEEccCccc
Confidence 11 12579999999999998764222211111 111100 0000 000011123568889998888876
Q ss_pred HHHHHHHH
Q 020549 303 AYFKAVEE 310 (324)
Q Consensus 303 ~l~~~i~~ 310 (324)
+-|..+..
T Consensus 183 e~fkwl~q 190 (193)
T KOG0077|consen 183 EGFKWLSQ 190 (193)
T ss_pred eeeeehhh
Confidence 66655543
No 337
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.89 E-value=1.3e-08 Score=82.48 Aligned_cols=37 Identities=32% Similarity=0.616 Sum_probs=32.4
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
|+++|++|+||||++..+.......+.++.++..|+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 7899999999999999999887777888888887764
No 338
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.88 E-value=2.5e-09 Score=95.95 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=79.7
Q ss_pred CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCCh
Q 020549 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
-+.|+|.+|++++......+ +.....|..+++|-+..+.-..+ .+++........|+++|++|+|+-..
T Consensus 220 viTFIDLAGHEkYLKTTvFG------MTGH~PDf~MLMiGaNaGIiGmT-----KEHLgLALaL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFG------MTGHMPDFTMLMIGANAGIIGMT-----KEHLGLALALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eEEEEeccchhhhhheeeec------cccCCCCceEEEecccccceecc-----HHhhhhhhhhcCcEEEEEEeeccCcH
Confidence 45699999987763211111 11244689999999888765544 22335556678999999999999988
Q ss_pred HhHHHHHHhHHHHHHHH--hcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHHHHH
Q 020549 247 EFALEWMQDFEVFQAAI--SSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 247 ~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
...++.++-+..+++.- .+-|-......+.+... ..| -..+|||-+|..+|+|++-|...|-
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A-~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAA-VNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEee-ccCccccccceEEeccccCCChHHHHHHHh
Confidence 87666666555554421 11111111111100000 011 1247999999999999998766654
No 339
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.88 E-value=8e-08 Score=90.86 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=80.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..|+++|++|+||||++..|.......+..+.++..|+... ........+.+..++......
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~----------aa~eQL~~la~~~gvp~~~~~----- 157 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP----------AAYDQLKQLAEKIGVPFYGDP----- 157 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH----------HHHHHHHHHHHHcCCcEEecC-----
Confidence 45778999999999999999999877665566777766554211 111111222233332211100
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
........+..+.......+++|+||||.... .......+........+|.+++|+|+..+.... ..+..
T Consensus 158 -~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~--d~~lm~El~~l~~~~~pdevlLVvda~~gq~av-------~~a~~ 227 (437)
T PRK00771 158 -DNKDAVEIAKEGLEKFKKADVIIVDTAGRHAL--EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK-------NQAKA 227 (437)
T ss_pred -CccCHHHHHHHHHHHhhcCCEEEEECCCcccc--hHHHHHHHHHHHHHhcccceeEEEeccccHHHH-------HHHHH
Confidence 00111111111111122459999999996543 222333333333334578999999997753111 11122
Q ss_pred HhhcCCC-eEEEeeccccC
Q 020549 227 LYKTRLP-LVLAFNKTDVA 244 (324)
Q Consensus 227 ~~~~~~p-~ilv~NK~Dl~ 244 (324)
+.. .++ .-+|+||+|-.
T Consensus 228 F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 228 FHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred HHh-cCCCCEEEEecccCC
Confidence 221 122 35678999854
No 340
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.88 E-value=1.6e-08 Score=82.67 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=80.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc------------------ccc---------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA------------------NID--------- 119 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~--------- 119 (324)
..+.+|+|+|++|+|||||+|.+.+...+..+.+.+.+.|.+-..-...+ +++
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence 46778999999999999999999999999999999988876433211111 110
Q ss_pred -hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 120 -IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 120 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++..+..+....|+.......+. .+|.|.+|++..+++......+.++|.|=
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~--~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPG--ELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCcc--ccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 1234456666777777765555543 69999999999999999999999999984
No 341
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=7.9e-09 Score=89.55 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=100.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.+.+++.|.+|+|||+|||.+++...... +....++.+ .++-+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~----------t~k~K~g~T----------------------q~in~f- 179 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIAD----------TSKSKNGKT----------------------QAINHF- 179 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhh----------hcCCCCccc----------------------eeeeee-
Confidence 45667899999999999999999988643321 011011111 011110
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
.-+..+.++|.||.....+ ..........++.. ..--.+++++|++-++++.+.
T Consensus 180 -----------------~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~---- 238 (320)
T KOG2486|consen 180 -----------------HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDN---- 238 (320)
T ss_pred -----------------eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCCh----
Confidence 2256889999999544311 11223333333322 222456788899999888873
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChHhH------HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeee
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHEFA------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGV 293 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~v 293 (324)
..+..+.+.++|+.+|+||||....-.. ......+..+-+ ..+ ...|.+.+
T Consensus 239 -~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~---------------------~~f~~~~Pw~~~ 296 (320)
T KOG2486|consen 239 -PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR---------------------GVFLVDLPWIYV 296 (320)
T ss_pred -HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc---------------------cceeccCCceee
Confidence 2346677889999999999998754220 001111111100 111 22467789
Q ss_pred ccccCCChHHHHHHHHH
Q 020549 294 SSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 294 SA~~g~gv~~l~~~i~~ 310 (324)
|+.++.|++.|+-.+..
T Consensus 297 Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 297 SSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ecccccCceeeeeehhh
Confidence 99999999998766543
No 342
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=6.3e-09 Score=99.31 Aligned_cols=132 Identities=22% Similarity=0.229 Sum_probs=77.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC--C-cccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN--G-GILTSL 145 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~ 145 (324)
...|+++|+-.+|||+|+..|..+..+...... -....|+...- .+ .+.|.... . ..+++
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~-------e~~lrytD~l~-------~E--~eRg~sIK~~p~Tl~l~- 190 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNT-------EADLRYTDTLF-------YE--QERGCSIKSTPVTLVLS- 190 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccc-------cccccccccch-------hh--HhcCceEeecceEEEEe-
Confidence 457999999999999999999988665421110 00111221100 00 00011000 0 01111
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.+ .++.+-+.|+||||+..|.. .+...+ ..+|.+|++||+.+++.-... ..++
T Consensus 191 -----D~---------~~KS~l~nilDTPGHVnF~D------E~ta~l--~~sDgvVlvvDv~EGVmlntE-----r~ik 243 (971)
T KOG0468|consen 191 -----DS---------KGKSYLMNILDTPGHVNFSD------ETTASL--RLSDGVVLVVDVAEGVMLNTE-----RIIK 243 (971)
T ss_pred -----cC---------cCceeeeeeecCCCcccchH------HHHHHh--hhcceEEEEEEcccCceeeHH-----HHHH
Confidence 10 02345678999999888722 222222 336999999999999865542 2234
Q ss_pred HHhhcCCCeEEEeeccccC
Q 020549 226 ILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~ 244 (324)
..-+.+.|+++|+||+|++
T Consensus 244 haiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 244 HAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHhccCcEEEEEehhHHH
Confidence 4556789999999999975
No 343
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.87 E-value=4.9e-09 Score=89.83 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=33.7
Q ss_pred HhhhhhhhhhhhccccCCCCCCCc-cccCCCc-EEEEEccCCCcHHHHHHHHHhccc
Q 020549 40 EITESMDKLHIEESSSGLAGSSSI-NFKRKPV-IIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
-++..+.+++.+....+..+.... ...+.+. +|+++|.|.+|||||+..|++...
T Consensus 28 llkaklaKlrreli~~g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s 84 (358)
T KOG1487|consen 28 LLKAKLAKLRRELITGGGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFS 84 (358)
T ss_pred HHHHHHhhhhHhhccCCCCCCCCCccceeecceeeeEEecCccchhhhhhhhcCCCC
Confidence 344555566655544332222211 1122333 799999999999999999998743
No 344
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=5.6e-08 Score=80.40 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec---------------cCCccccccccccc-------chhc--
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN---------------LDPAVMTLPFAANI-------DIRD-- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~---------------~d~~~~~~~~~~~~-------~~~~-- 122 (324)
..+..|+++|++|+|||||+|-+.+-..+..+.+.+.+ ++..........++ .+.+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~ 108 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ 108 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHH
Confidence 35677999999999999999999998766554444433 22222111111111 1111
Q ss_pred -HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHHHhccCCc
Q 020549 123 -TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFASTFPT 199 (324)
Q Consensus 123 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~~~~~~~d 199 (324)
+.+...++...||....-.. .=++|.||+|++.++++...++++.++|.| |-.+.+.+......+.+.++.+..-
T Consensus 109 R~~~a~q~l~~VgL~~~~~~~--i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~ 185 (259)
T COG4525 109 RREIAHQMLALVGLEGAEHKY--IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ 185 (259)
T ss_pred HHHHHHHHHHHhCcccccccc--eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 22445667788887754322 225999999999999999999999999999 6556556666666667777665443
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.9e-08 Score=82.32 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=58.0
Q ss_pred CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549 198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL 277 (324)
Q Consensus 198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 277 (324)
+|++++|+|++........ .+. ..+...++|+++|+||+|+........+. .+.
T Consensus 13 aD~vl~V~D~~~~~~~~~~--~l~---~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~-------------------- 66 (156)
T cd01859 13 SDVVLEVLDARDPELTRSR--KLE---RYVLELGKKLLIVLNKADLVPKEVLEKWK-SIK-------------------- 66 (156)
T ss_pred CCEEEEEeeCCCCcccCCH--HHH---HHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HHH--------------------
Confidence 6999999999775543331 111 22334579999999999997643221111 110
Q ss_pred HHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
. ..+.+++++||++|.|+++|++.|.+.++.
T Consensus 67 -----~-~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 67 -----E-SEGIPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred -----H-hCCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence 1 124679999999999999999999988764
No 346
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.86 E-value=5.3e-08 Score=85.16 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=76.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------------------------cccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------------------TLPF 114 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------------------------~~~~ 114 (324)
...+..++|+|++|||||||+++|.+...+..+.+.+.+.+.... .+|+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~ 104 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH 104 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc
Confidence 346788999999999999999999998877766666655432210 1111
Q ss_pred ccccc---hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 115 AANID---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 115 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
...+. ..+...+.++++..++...... ..+.+|.|.+|++.++.+...+.+++|+|.|--
T Consensus 105 ~~~~~~~~~~D~~~v~~aL~~~~~~~la~r--~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs 167 (258)
T COG1120 105 LGLFGRPSKEDEEIVEEALELLGLEHLADR--PVDELSGGERQRVLIARALAQETPILLLDEPTS 167 (258)
T ss_pred cccccCCCHhHHHHHHHHHHHhCcHHHhcC--cccccChhHHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 11111 1233356667888877664332 244699999999999999999999999999974
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.85 E-value=2.4e-08 Score=81.62 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHH
Q 020549 199 TVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLS 278 (324)
Q Consensus 199 d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 278 (324)
|++++|+|++........+.. . ..+...++|+|+|+||+|+.+.+....++..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~---~-~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~--------------------- 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIE---R-VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLR--------------------- 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHH---H-HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHH---------------------
Confidence 689999999776544432211 0 233456799999999999987654433332221
Q ss_pred HhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 279 LALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 279 ~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.. .+.+++++||++|.|+++|++.|.+...
T Consensus 56 ----~~-~~~~ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 56 ----HS-YPTIPFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred ----hh-CCceEEEEeccCCcChhhHHHHHHHHhH
Confidence 11 2467899999999999999999977643
No 348
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=4.3e-08 Score=86.60 Aligned_cols=109 Identities=15% Similarity=0.210 Sum_probs=83.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc-----------------------ccccccc---
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-----------------------PFAANID--- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~--- 119 (324)
-+++.+++|+|++|||||||++.+-+-..+..+.+.+.+.+...-.. +...++-
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PL 108 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL 108 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhH
Confidence 45778899999999999999999999888888888887755432110 0000000
Q ss_pred -----hhcH--HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 120 -----IRDT--IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 120 -----~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
.+.. .++.++++.+||.+.....++ ++|.|++|++.++++...++++++.|.|-.
T Consensus 109 eiag~~k~ei~~RV~elLelVgL~dk~~~yP~--qLSGGQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 109 ELAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCChhhhccCch--hcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence 0111 267789999999987776665 799999999999999999999999999864
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.83 E-value=1.1e-07 Score=87.70 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++.+|+|+|++||||||++..|.......+..+.++..|+... ...-....+.+..++.. ... .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ri----------aAvEQLk~yae~lgipv----~v~--~ 303 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI----------GTVQQLQDYVKTIGFEV----IAV--R 303 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcch----------HHHHHHHHHhhhcCCcE----Eec--C
Confidence 4578999999999999999999987666666666655543210 00101111122222110 000 0
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
-...+...+..+.. ..+.+++|+||||.... ....-..+.+.+.....+.+++|+|+.....+... .+..+
T Consensus 304 d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~------i~~~F 374 (436)
T PRK11889 304 DEAAMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE------IITNF 374 (436)
T ss_pred CHHHHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH------HHHHh
Confidence 01112222222211 12579999999995432 12223344444444556788899998654433221 12333
Q ss_pred hhcCCCeEEEeeccccCCh
Q 020549 228 YKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~ 246 (324)
...+ .-=++++|.|-...
T Consensus 375 ~~~~-idglI~TKLDET~k 392 (436)
T PRK11889 375 KDIH-IDGIVFTKFDETAS 392 (436)
T ss_pred cCCC-CCEEEEEcccCCCC
Confidence 3322 33689999997653
No 350
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.83 E-value=6.1e-08 Score=82.71 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=77.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------------------cccccccc---
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------------LPFAANID--- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------------------~~~~~~~~--- 119 (324)
..++...+|+|++|+|||||++.+.+...+..+.+.+.+.+..-.+ .+...++.
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl 110 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL 110 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheeh
Confidence 4678889999999999999999999999999888888777642211 11111110
Q ss_pred -----hhc-HH--HHHHHHHHcCCCCCC-cccccccccChHHHHHHHHHHHHhCCCCEEEEeCC--CC
Q 020549 120 -----IRD-TI--RYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP--GQ 176 (324)
Q Consensus 120 -----~~~-~~--~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp--G~ 176 (324)
... .+ .+..-++..||.+.. -..++ ++|.||+.++..+++..-+++++|+|.| |+
T Consensus 111 re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps--ELSGGM~KRvaLARAialdPell~~DEPtsGL 176 (263)
T COG1127 111 REHTKLPESLIRELVLMKLELVGLRGAAADLYPS--ELSGGMRKRVALARAIALDPELLFLDEPTSGL 176 (263)
T ss_pred HhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch--hhcchHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 001 11 122335567777663 34444 6999999999999999999999999987 64
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.81 E-value=2.9e-07 Score=76.59 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=76.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc--c
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL--F 148 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 148 (324)
.++++|++|+||||++..+.......+..+.++..|+... ........+.+..++. +...... .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~----------~~~~~l~~~~~~~~~~----~~~~~~~~~~ 67 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP----------AAIEQLRVLGEQVGVP----VFEEGEGKDP 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh----------HHHHHHHHhcccCCeE----EEecCCCCCH
Confidence 5789999999999999999877655566676666554211 0000111111122211 1110000 0
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.+.. ....+.+++|+||||.... .......+.........+.+++|+|+......... .. ....
T Consensus 68 ~~~~~~~~~~--~~~~~~d~viiDt~g~~~~--~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~----~~--~~~~ 137 (173)
T cd03115 68 VSIAKRAIEH--AREENFDVVIVDTAGRLQI--DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQ----AK--AFNE 137 (173)
T ss_pred HHHHHHHHHH--HHhCCCCEEEEECcccchh--hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHH----HH--HHHh
Confidence 0111111111 2245788999999996532 11112222222222347899999998533221111 11 1222
Q ss_pred hcCCCeEEEeeccccCCh
Q 020549 229 KTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~ 246 (324)
..+ ..-+|+||+|....
T Consensus 138 ~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 138 ALG-ITGVILTKLDGDAR 154 (173)
T ss_pred hCC-CCEEEEECCcCCCC
Confidence 233 35788899998754
No 352
>PRK10867 signal recognition particle protein; Provisional
Probab=98.81 E-value=2.8e-07 Score=87.03 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=79.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.++..|+++|++|+||||++..|+...... +..+.++..|+... ........+.+..++.......
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~----------aa~eQL~~~a~~~gv~v~~~~~--- 164 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP----------AAIEQLKTLGEQIGVPVFPSGD--- 164 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch----------HHHHHHHHHHhhcCCeEEecCC---
Confidence 346789999999999999999988766555 66777766654221 1111122223333322110000
Q ss_pred cccChHHH-HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 146 NLFTTKFD-EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..-...+. +.+..+ ...+++++|+||||.... .......+........++-+++|+|+..+. +. ...+
T Consensus 165 ~~dp~~i~~~a~~~a--~~~~~DvVIIDTaGrl~~--d~~lm~eL~~i~~~v~p~evllVlda~~gq---~a----v~~a 233 (433)
T PRK10867 165 GQDPVDIAKAALEEA--KENGYDVVIVDTAGRLHI--DEELMDELKAIKAAVNPDEILLVVDAMTGQ---DA----VNTA 233 (433)
T ss_pred CCCHHHHHHHHHHHH--HhcCCCEEEEeCCCCccc--CHHHHHHHHHHHHhhCCCeEEEEEecccHH---HH----HHHH
Confidence 00001111 111111 244689999999995432 122222333333333467789999985431 21 1111
Q ss_pred HHHh-hcCCCeEEEeeccccCC
Q 020549 225 SILY-KTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 225 ~~~~-~~~~p~ilv~NK~Dl~~ 245 (324)
..+. ..+ ..-+|+||+|-..
T Consensus 234 ~~F~~~~~-i~giIlTKlD~~~ 254 (433)
T PRK10867 234 KAFNEALG-LTGVILTKLDGDA 254 (433)
T ss_pred HHHHhhCC-CCEEEEeCccCcc
Confidence 2222 222 2357889999643
No 353
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.81 E-value=1.6e-08 Score=83.99 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=78.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccc-------hhcH---------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID-------IRDT--------------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~--------------- 123 (324)
...+..++++|++||||||+++.|.+...+..+.+++.+.|...........+. +.++
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~ 104 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG 104 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999998877765433222222221 1111
Q ss_pred -------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 -------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+..++++.+++... .-.....||.||+|++.++++.-.++.++++|.|-
T Consensus 105 l~~~~~kari~~l~k~l~l~~~--~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEY--LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHH--HHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 133455666665442 22233459999999999999999999999999884
No 354
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.80 E-value=8e-08 Score=81.66 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=84.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCc-ceEEEeccCCcccccccccccch--------hc-------------------
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRN-IRGYVMNLDPAVMTLPFAANIDI--------RD------------------- 122 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--------~~------------------- 122 (324)
+|+|+|..|+||||+.-.|+...+..+ +.+.++.-|+ -.+.+..-.+.. +.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 799999999999999998777777766 8888888887 333332221110 00
Q ss_pred -HHHHHHHHHHcC---------------CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeC-CCCcchhhhhhh
Q 020549 123 -TIRYKEVMKQFN---------------LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT-PGQIEIFTWSAS 185 (324)
Q Consensus 123 -~~~~~~~~~~~~---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt-pG~~~~~~~~~~ 185 (324)
.....++++++. -+..||.|+ +.. -.+..+..+. ....+++++|| +|++.|.. +..
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp-~~a---llR~~l~~l~--~~~~e~VivDtEAGiEHfgR-g~~ 153 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP-MNA---LLRRLLRHLI--LNRYEVVIVDTEAGIEHFGR-GTI 153 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch-HHH---HHHHHHHHHh--cccCcEEEEecccchhhhcc-ccc
Confidence 001122222111 112234443 222 2222232222 33479999998 68777621 111
Q ss_pred HHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC-CCeEEEeeccccC
Q 020549 186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTDVA 244 (324)
Q Consensus 186 ~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl~ 244 (324)
..+|+++.|+|.+... .. .. ....+.....+ +++.+|+||+|-.
T Consensus 154 ----------~~vD~vivVvDpS~~s--l~-ta--eri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 ----------EGVDLVIVVVDPSYKS--LR-TA--ERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ----------cCCCEEEEEeCCcHHH--HH-HH--HHHHHHHHHhCCceEEEEEeeccch
Confidence 1259999999985421 11 11 11112334467 8999999999965
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=3.1e-08 Score=81.18 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCcEEEEEEcCCCCCCchh-HHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549 197 FPTVVTYVVDTPRSANPMT-FMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 197 ~~d~iv~vvD~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 275 (324)
.+|++++|+|++....... .+...+ .. ...++|+|+|+||+|+.+++....+...+.
T Consensus 8 ~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~------------------ 65 (157)
T cd01858 8 SSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVTARWVKILS------------------ 65 (157)
T ss_pred hCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHh------------------
Confidence 4799999999987654332 222211 21 133589999999999987654333332222
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
+.++. .++++||+++.|+++|++.|...+
T Consensus 66 -------~~~~~-~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 66 -------KEYPT-IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred -------cCCcE-EEEEeeccccccHHHHHHHHHHHH
Confidence 11121 268899999999999999997764
No 356
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=8.9e-08 Score=90.15 Aligned_cols=145 Identities=21% Similarity=0.328 Sum_probs=91.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...+++|+++||||+|||||++.|....... ++..+ + |.++-
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~-----------ti~~i--------~------------------GPiTv- 107 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-----------TIDEI--------R------------------GPITV- 107 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHh-----------hhhcc--------C------------------CceEE-
Confidence 4567888999999999999999998763221 01111 1 11100
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.+ ++...+.|+.+|.-.. .|... +..+|+++++||+..++.-.+ +..+.
T Consensus 108 --vs-------------gK~RRiTflEcp~Dl~---------~miDv--aKIaDLVlLlIdgnfGfEMET-----mEFLn 156 (1077)
T COG5192 108 --VS-------------GKTRRITFLECPSDLH---------QMIDV--AKIADLVLLLIDGNFGFEMET-----MEFLN 156 (1077)
T ss_pred --ee-------------cceeEEEEEeChHHHH---------HHHhH--HHhhheeEEEeccccCceehH-----HHHHH
Confidence 00 3466888999994211 11111 123599999999999887655 44557
Q ss_pred HHhhcCCCeEE-EeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549 226 ILYKTRLPLVL-AFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (324)
Q Consensus 226 ~~~~~~~p~il-v~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g 298 (324)
.+...+.|-|+ |++-.|+....... ++..++++ ..+|.+.+.++.+|.+|...+
T Consensus 157 il~~HGmPrvlgV~ThlDlfk~~stL------r~~KKrlk-------------hRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 157 ILISHGMPRVLGVVTHLDLFKNPSTL------RSIKKRLK-------------HRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred HHhhcCCCceEEEEeecccccChHHH------HHHHHHHh-------------hhHHHHHcCCceEEEeccccc
Confidence 77788999887 99999998754221 11111111 124556788899999998764
No 357
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.79 E-value=8.2e-08 Score=87.20 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=78.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------c---ccccc---cc--chh----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------T---LPFAA---NI--DIR---- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~---~~~~~---~~--~~~---- 121 (324)
-..+.+++++||+|||||||++.+.|-..+.++.+.+.+.+..-- + ||.-+ ++ .++
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~ 105 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV 105 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC
Confidence 356778999999999999999999999988888877766654321 0 11100 11 011
Q ss_pred --c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 122 --D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 122 --~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
. ..++.++.+.+++.......+ ..+|.|++|++..+++.-..+++.++|.|=.
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL~r~P--~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLLNRKP--LQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHHhcCc--ccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 1 125667788888776444333 3699999999999999999999999999963
No 358
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.78 E-value=5.7e-08 Score=88.69 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=81.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc-------------c--------hh---
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-------------D--------IR--- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~--------~~--- 121 (324)
-.++.+++++||+|||||||++.|.|-..+.++.+.+.+.+.+-- -|+...+ . ++
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 356778999999999999999999999999888887766654321 1111111 1 11
Q ss_pred ----cH--HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ----DT--IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ----~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.. .++.++++.+++......... ++|.|++|++..+++....++++++|.|=
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLEGFADRKPH--QLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhChh--hhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 11 267888999999886665543 79999999999999999999999999994
No 359
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.2e-07 Score=83.69 Aligned_cols=126 Identities=13% Similarity=0.201 Sum_probs=87.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc---CCccc------------------------ccccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---DPAVM------------------------TLPFAANID 119 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~---d~~~~------------------------~~~~~~~~~ 119 (324)
+.+..++++|++|||||||++.+.|-..+..+.+.+.+. |..-- ++.++-.+.
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 467789999999999999999999999988877777666 33210 011111000
Q ss_pred ------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHH
Q 020549 120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEA 192 (324)
Q Consensus 120 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~ 192 (324)
.+-+.++.++++.+.|..-+...+. ++|.|++|++..+++....++++++|.| |--+...+..+..++.+.
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCch--hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 1223356777888888765555543 7999999999999999999999999999 433443344445555544
Q ss_pred Hh
Q 020549 193 FA 194 (324)
Q Consensus 193 ~~ 194 (324)
..
T Consensus 184 ~~ 185 (345)
T COG1118 184 HD 185 (345)
T ss_pred HH
Confidence 43
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.77 E-value=5.1e-08 Score=77.78 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=74.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc----cchh---cHHHHHHH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN----IDIR---DTIRYKEV 129 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~----~~~~---~~~~~~~~ 129 (324)
.++..++|+|++|+|||||++.|++...+..+.+.+.+.+..... .+.... ..+. ....+.++
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~ 88 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEV 88 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHH
T ss_pred cCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999999999998776666666544332200 000000 0011 12245677
Q ss_pred HHHcCCCCCC--cccccccccChHHHHHHHHHHHHhCCCCEEEEeCC
Q 020549 130 MKQFNLGPNG--GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (324)
Q Consensus 130 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 174 (324)
++.+++.... .+-.....+|.|+++++..+.+....++++|+|.|
T Consensus 89 l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 89 LKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7877766521 22223367999999999999999999999999988
No 361
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.76 E-value=5.4e-08 Score=81.62 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=72.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHH-HHHHHHHHcCCCCCCccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI-RYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 144 (324)
-.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+... .... ..+..+ .+..+++.+++.... -..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~--~~~~---~~~~~i~~~~q~l~~~gl~~~~--~~~ 94 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS--LSPK---ELARKIAYVPQALELLGLAHLA--DRP 94 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc--CCHH---HHHHHHhHHHHHHHHcCCHhHh--cCC
Confidence 35678899999999999999999999987777777665443211 0000 011122 223367777775421 223
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+|.|+++++..+.+...+++++++|.|-
T Consensus 95 ~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 95 FNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3469999999999999999999999999985
No 362
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.3e-08 Score=95.13 Aligned_cols=129 Identities=21% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc-ccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.....++++-+...|||||...|+.....+..+ ..+.- ..|.|.-.. ..||....
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~r------------lagkirfld~redeq------------~rgitmks 62 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSR------------LAGKIRFLDTREDEQ------------TRGITMKS 62 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechh------------hccceeeccccchhh------------hhceeeec
Confidence 344569999999999999999998654332111 00000 001111000 01333221
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+| ...++..+.|+|+||+.+|.. .... +..++|.++++||+.+|...++.. .++
T Consensus 63 s~is-----------~~~~~~~~nlidspghvdf~s--evss------as~l~d~alvlvdvvegv~~qt~~-----vlr 118 (887)
T KOG0467|consen 63 SAIS-----------LLHKDYLINLIDSPGHVDFSS--EVSS------ASRLSDGALVLVDVVEGVCSQTYA-----VLR 118 (887)
T ss_pred cccc-----------cccCceEEEEecCCCccchhh--hhhh------hhhhcCCcEEEEeeccccchhHHH-----HHH
Confidence 1111 114577889999999999832 1111 224579999999999999887732 224
Q ss_pred HHhhcCCCeEEEeecccc
Q 020549 226 ILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl 243 (324)
.....+...++|+||+|.
T Consensus 119 q~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 119 QAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHccCceEEEEehhhh
Confidence 444567788999999994
No 363
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.76 E-value=8.5e-08 Score=85.89 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=35.2
Q ss_pred CcEEEEEEcCC-CCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHH
Q 020549 198 PTVVTYVVDTP-RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEV 258 (324)
Q Consensus 198 ~d~iv~vvD~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~ 258 (324)
.++++|.+++. +++.+.+ +..++.+ ...+++|-|+.|+|....++.....+.+..
T Consensus 114 VH~cLYfI~pt~~~L~~~D-----i~~mk~L-s~~vNvIPvIaKaD~lt~~el~~~k~~i~~ 169 (281)
T PF00735_consen 114 VHACLYFIPPTGHGLKPLD-----IEFMKRL-SKRVNVIPVIAKADTLTPEELQAFKQRIRE 169 (281)
T ss_dssp EEEEEEEE-TTSSSS-HHH-----HHHHHHH-TTTSEEEEEESTGGGS-HHHHHHHHHHHHH
T ss_pred cceEEEEEcCCCccchHHH-----HHHHHHh-cccccEEeEEecccccCHHHHHHHHHHHHH
Confidence 37999999975 4566555 2222222 335788999999999998877666555553
No 364
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.75 E-value=5e-08 Score=88.78 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------cccccc----cchhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAAN----IDIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~----~~~~~---------- 122 (324)
..++..++|+|++|||||||++.|++...+..+.+.+.+.++.... .+.... ..+++
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 3467789999999999999999999998887777777665532110 000000 00111
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....++++.+++... .-.....+|.|+++++.++.+...+++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchH--hcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 1123466777777542 22334469999999999999999999999999884
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.74 E-value=5.5e-07 Score=85.04 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=79.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc-CCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.++..++++|++|+||||++..|+.... ..+..+.++..|+... .....+..+.+..++........
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~----------~a~~QL~~~a~~~gvp~~~~~~~-- 164 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP----------AAIEQLKVLGQQVGVPVFALGKG-- 164 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch----------HHHHHHHHHHHhcCCceEecCCC--
Confidence 3467899999999999999999987744 3456777766654211 11111122223333221110000
Q ss_pred cccChHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 146 NLFTTKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
.-...+ ...+..+ ...+++++|+||||.... .......+.+......++-+++|+|+..+..... .+
T Consensus 165 -~~P~~i~~~al~~~--~~~~~DvVIIDTaGr~~~--d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~-------~a 232 (428)
T TIGR00959 165 -QSPVEIARRALEYA--KENGFDVVIVDTAGRLQI--DEELMEELAAIKEILNPDEILLVVDAMTGQDAVN-------TA 232 (428)
T ss_pred -CCHHHHHHHHHHHH--HhcCCCEEEEeCCCcccc--CHHHHHHHHHHHHhhCCceEEEEEeccchHHHHH-------HH
Confidence 000011 1112222 245689999999995442 1222333333333344688899999865421111 11
Q ss_pred HHHh-hcCCCeEEEeeccccCC
Q 020549 225 SILY-KTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 225 ~~~~-~~~~p~ilv~NK~Dl~~ 245 (324)
..+. ..++ .=+|+||+|-..
T Consensus 233 ~~f~~~v~i-~giIlTKlD~~~ 253 (428)
T TIGR00959 233 KTFNERLGL-TGVVLTKLDGDA 253 (428)
T ss_pred HHHHhhCCC-CEEEEeCccCcc
Confidence 2222 2232 367799999543
No 366
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.74 E-value=6.6e-08 Score=89.14 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=74.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccccc----chhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAANI----DIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~----~~~~---------- 122 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+..... .+....+ .+.+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 3567889999999999999999999998887777777665432110 0000000 0111
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....++++.+++.... -.....+|.|+++++.++.+...+++++|+|.|-
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~--~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKA--DARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhh--CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11234567777776422 2223469999999999999999999999999884
No 367
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.74 E-value=3.6e-07 Score=81.50 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=59.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccch-hcHH-----HHHHHHHHcCCCCCCcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI-RDTI-----RYKEVMKQFNLGPNGGI 141 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~~~ 141 (324)
...+++|+|.||+|||||+|+|+..... ..++|++| |++ ..++ +++-.++.++- ++
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-------------~~NfPF~T-IdPn~a~V~v~d~Rfd~l~~~Y~~--~~-- 80 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-------------AANFPFCT-IDPNEARVEVPDSRFDLLCPIYGP--KS-- 80 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-------------ccCCCcce-eccccceeecCchHHHHHHHhcCC--cc--
Confidence 3468999999999999999999987543 45566664 221 1111 11111111110 00
Q ss_pred cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh-hhhhHHHHHHHHhccCCcEEEEEEcC
Q 020549 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDT 207 (324)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vvD~ 207 (324)
.....+.++|.+|...-.. ...++..++..++. +|.++.||++
T Consensus 81 ---------------------~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~--vDaifhVVr~ 124 (391)
T KOG1491|consen 81 ---------------------KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRH--VDAIFHVVRA 124 (391)
T ss_pred ---------------------eeeeeEEEEeecccccCcccCcCchHHHHHhhhh--ccceeEEEEe
Confidence 1134678999999876432 22356666665543 5788888876
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.73 E-value=4.5e-08 Score=81.69 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+. +++....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i--------------------------------~~~~q~~ 70 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP--------------------------------VYKPQYI 70 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE--------------------------------EEEcccC
Confidence 56788999999999999999999998877766665533211 1111111
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+|.|+++++..+.+...+++++++|.|-
T Consensus 71 ~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 28999999999999999999999999984
No 369
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.73 E-value=3.2e-07 Score=84.33 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..++++|++|+||||++..|.......+..+.++..|+... + .........+..++.. ...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~----g------AveQLk~yae~lgvpv----~~~-- 267 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS----G------AVEQFQGYADKLDVEL----IVA-- 267 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc----c------HHHHHHHHhhcCCCCE----Eec--
Confidence 45678999999999999999999877655566777766554321 0 0001111112222111 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.-...+...+..+.. ..+.+++|+||||.... .......+.........+.+++|+++.. ...+ . ...+..
T Consensus 268 ~dp~dL~~al~~l~~-~~~~D~VLIDTAGr~~~--d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d-~---~~i~~~ 338 (407)
T PRK12726 268 TSPAELEEAVQYMTY-VNCVDHILIDTVGRNYL--AEESVSEISAYTDVVHPDLTCFTFSSGM--KSAD-V---MTILPK 338 (407)
T ss_pred CCHHHHHHHHHHHHh-cCCCCEEEEECCCCCcc--CHHHHHHHHHHhhccCCceEEEECCCcc--cHHH-H---HHHHHh
Confidence 001111111211110 13679999999996442 1222223333333334577778887632 2222 1 111122
Q ss_pred HhhcCCCeEEEeeccccCC
Q 020549 227 LYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~ 245 (324)
+...+ +--+|+||.|-..
T Consensus 339 f~~l~-i~glI~TKLDET~ 356 (407)
T PRK12726 339 LAEIP-IDGFIITKMDETT 356 (407)
T ss_pred cCcCC-CCEEEEEcccCCC
Confidence 22222 3377899999754
No 370
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.73 E-value=6.6e-08 Score=87.92 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=74.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------cccccccc----cchhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAAN----IDIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~----~~~~~---------- 122 (324)
..++..++|+|++|||||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG 95 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 35677899999999999999999999987777777665543211 00010000 00111
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 96 LPKDEAEERAEELLELFELGEAA--DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CCHHHHHHHHHHHHHHcCChhHh--CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11345678888876422 2233469999999999999999999999999884
No 371
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.72 E-value=1.3e-07 Score=91.77 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
...+|+|+|.+|+||||++|+|++...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekv 143 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVK 143 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccc
Confidence 346799999999999999999998753
No 372
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=2.5e-07 Score=88.37 Aligned_cols=150 Identities=18% Similarity=0.190 Sum_probs=74.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCC--cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (324)
...+.+|+|+|++|+||||++..|....... +..+.++..|.... + ..+.+..++ ...++..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi----g----------A~EQLk~ya--~iLgv~v 410 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV----G----------GREQLHSYG--RQLGIAV 410 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc----c----------HHHHHHHhh--cccCcee
Confidence 3457789999999999999999998764332 23455554443110 0 011111111 1112111
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
....-...+.. .+. ...+.+++|+||||.... .......+. .+........++|+++..+..... ..+
T Consensus 411 ~~a~d~~~L~~---aL~-~l~~~DLVLIDTaG~s~~--D~~l~eeL~-~L~aa~~~a~lLVLpAtss~~Dl~---eii-- 478 (559)
T PRK12727 411 HEADSAESLLD---LLE-RLRDYKLVLIDTAGMGQR--DRALAAQLN-WLRAARQVTSLLVLPANAHFSDLD---EVV-- 478 (559)
T ss_pred EecCcHHHHHH---HHH-HhccCCEEEecCCCcchh--hHHHHHHHH-HHHHhhcCCcEEEEECCCChhHHH---HHH--
Confidence 10000111222 222 224689999999996543 111121221 222222234567777765433322 222
Q ss_pred HHHHhhcCCCeEEEeeccccCC
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+.. ..+.-+|+||+|...
T Consensus 479 -~~f~~-~~~~gvILTKlDEt~ 498 (559)
T PRK12727 479 -RRFAH-AKPQGVVLTKLDETG 498 (559)
T ss_pred -HHHHh-hCCeEEEEecCcCcc
Confidence 22222 246789999999754
No 373
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.69 E-value=1.5e-07 Score=80.60 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=73.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------cccccccc-----ccchhc-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAA-----NIDIRD----------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~~~~~~~-----~~~~~~----------- 122 (324)
-..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+.. +...+... ...+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~ 102 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA 102 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCc
Confidence 3567789999999999999999999987776666655443321 00000000 000111
Q ss_pred -HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|++|++..+.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 103 GNEQAETVLKDLDLYALK--ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred cHHHHHHHHHHcCCchhc--CCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 12345677888876432 2233469999999999999999999999999985
No 374
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.68 E-value=5.3e-07 Score=73.17 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=79.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccc------------------------cccc--
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA------------------------ANID-- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~------------------------~~~~-- 119 (324)
.+.+..|+|+|++|+|||||+.-|.+-..+..+.+.+.+.+..--+.... .++-
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lP 112 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP 112 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccch
Confidence 45678899999999999999999999988877777766654321111000 0110
Q ss_pred -------h-hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 120 -------I-RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 120 -------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ..+-...++++.+||+.....++. ++|.+.+|++.++++....+++.|-|.|-
T Consensus 113 leL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~--qLSGGEQQRVAiARAfa~~P~vLfADEPT 174 (228)
T COG4181 113 LELRGESSADSRAGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPT 174 (228)
T ss_pred hhhcCCccccHHHHHHHHHHHhCcccccccCcc--ccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence 0 112245678888999877665554 79999999999999999999999999994
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.68 E-value=4.5e-07 Score=83.87 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=76.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCC-c-ceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-N-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (324)
..++..++++|++|+||||++..|....... + ..+.++..|... . .....+..+.+.+++.... ..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R----~------ga~EqL~~~a~~~gv~~~~--~~ 201 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR----I------GGHEQLRIFGKILGVPVHA--VK 201 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc----c------cHHHHHHHHHHHcCCceEe--cC
Confidence 3456789999999999999999999874322 2 345554433211 0 0111111222222321100 00
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
. ...+. .......+.+++||||||.... .......+........++-.++|+++..+....... +
T Consensus 202 ~----~~~l~----~~l~~l~~~DlVLIDTaG~~~~--d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i-- 266 (374)
T PRK14722 202 D----GGDLQ----LALAELRNKHMVLIDTIGMSQR--DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---V-- 266 (374)
T ss_pred C----cccHH----HHHHHhcCCCEEEEcCCCCCcc--cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---H--
Confidence 0 00111 1112234789999999996542 112222222221222345678999998766554422 1
Q ss_pred HHHHhhc-CC-------CeEEEeeccccCC
Q 020549 224 CSILYKT-RL-------PLVLAFNKTDVAQ 245 (324)
Q Consensus 224 ~~~~~~~-~~-------p~ilv~NK~Dl~~ 245 (324)
..+... +. +.=+|++|.|-..
T Consensus 267 -~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 267 -QAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred -HHHHHhhcccccccCCCCEEEEeccccCC
Confidence 111111 11 2357889999764
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.67 E-value=2.5e-08 Score=81.77 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~ 95 (324)
....|+++|.||||||||+|+|.+....
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~ 128 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC 128 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce
Confidence 3567899999999999999999986543
No 377
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.66 E-value=1.8e-07 Score=80.75 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=72.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------cccccccc----cchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAAN----IDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~----~~~~~------ 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence 35678899999999999999999999877766666655433210 00000000 00011
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|++|++..+.+...+++++|+|.|-
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 166 (216)
T TIGR00960 106 RIIGVPPRDANERVSAALEKVGLEGKA--HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT 166 (216)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11345667778775422 2233469999999999999999999999999985
No 378
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.66 E-value=2e-07 Score=79.58 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=73.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccc----ccchh----------c
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAA----NIDIR----------D 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~----~~~~~----------~ 122 (324)
-.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+..... .+... ...++ .
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 102 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS 102 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence 3567889999999999999999999988777666665544321100 00000 00111 1
Q ss_pred HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++..+.+....++++|+|.|-
T Consensus 103 ~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 103 DEQVEEALARVGLNGFE--DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred HHHHHHHHHHcCChhhh--cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22345667778775422 2233469999999999999999999999999885
No 379
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=1.8e-07 Score=80.61 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=71.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccccc----cchhc-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAAN----IDIRD----------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~----~~~~~----------- 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC
Confidence 35677899999999999999999999877666666554433210 00000000 00111
Q ss_pred -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 103 PKAEIRARVRELLELVGLEGLLN--RYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CHHHHHHHHHHHHHHcCChhhhh--cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 112346677777754221 223469999999999999999999999999885
No 380
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=3e-07 Score=76.23 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-------------------------------cccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------------------LPFA 115 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-------------------------------~~~~ 115 (324)
.++...+++||+|||||||+..+++......+.+++.+.+.+... +||.
T Consensus 25 ~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS 104 (252)
T COG4604 25 PKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS 104 (252)
T ss_pred cCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc
Confidence 456778999999999999999999888888888888776654321 1111
Q ss_pred c-ccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 116 A-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 116 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. .....++..++++++-++|.+-... -++++|.|++|+...+.....+.+++++|.|=
T Consensus 105 qGRlt~eD~~~I~~aieyl~L~~l~dr--yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 105 QGRLTKEDRRIINEAIEYLHLEDLSDR--YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred CCCCchHHHHHHHHHHHHhcccchHHH--hHHhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 0 0012334455666766666553322 23358999999999888888899999999985
No 381
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=1.7e-07 Score=81.22 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=72.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------ccccccc----ccchhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAA----NIDIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~----~~~~~~---------- 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+++
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG 102 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC
Confidence 34678899999999999999999999876666655554432210 0000000 000000
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|+++++..+.+...+++++++|.|-
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 103 VPGAERRERIDELLDFVGLLEA--ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1134566778887542 12233469999999999999999999999999985
No 382
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.65 E-value=1.5e-07 Score=85.46 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=74.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------cccccccc----chhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAANI----DIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~----~~~~---------- 122 (324)
...+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+....+ .+.+
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 356778999999999999999999999887777776655443210 00000000 0111
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....++++.+++..... .....+|.|+++++..+.+...+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQH--KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhc--CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 123456677888765322 223469999999999999999999999999984
No 383
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.65 E-value=6.8e-07 Score=76.71 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=76.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccc--cccc-------------------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF--AANI------------------------- 118 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~------------------------- 118 (324)
.+.+..++|+|++|||||||++.+++..++....+.+++.-.+...... ...+
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~ 133 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF 133 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecc
Confidence 4567889999999999999999999999887777777666443322200 0000
Q ss_pred ----c-------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 119 ----D-------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 119 ----~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
. -...-....+++.+++..-.. .....+|.|.++++-++++.-..+.+.|+|.|-+
T Consensus 134 ~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~--r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 134 FASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD--RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcchhhhcc--CchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 0 011223456677777664322 2233599999999999999999999999999853
No 384
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.3e-07 Score=80.97 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=77.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------------cccccccchh--------cH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------------LPFAANIDIR--------DT 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~--------~~ 123 (324)
..++..++|+|++|+|||||.+.|++...+..+.+.+.+....-.. -|+. .+.++ ..
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~-SLnP~~tv~~~l~Ep 108 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-SLNPRRTVGRILSEP 108 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCcc-ccCcchhHHHHHhhh
Confidence 4578889999999999999999999998887777777664221110 0111 11111 11
Q ss_pred ----------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 ----------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+..++++.+|+.+.--. ...++||.|++|++.++++....++++|.|.|-
T Consensus 109 l~~~~~~~~~~~i~~~L~~VgL~~~~l~-R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 109 LRPHGLSKSQQRIAELLDQVGLPPSFLD-RRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred hccCCccHHHHHHHHHHHHcCCCHHHHh-cCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 125788888988764222 223469999999999999999999999999986
No 385
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.65 E-value=9.9e-07 Score=74.58 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=70.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------cccccccc---c--chhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAAN---I--DIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------~~~~~~~~---~--~~~~------ 122 (324)
-..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+... ...+..+. + .+.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~ 94 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGP 94 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHH
Confidence 34677899999999999999999999877766666554433210 00000000 0 0010
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 95 LNLGLSEAEVERRVREALTAVGASGLR--ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 01234556667765321 2233468999999999999999999999999885
No 386
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=8.4e-08 Score=81.68 Aligned_cols=107 Identities=10% Similarity=0.168 Sum_probs=69.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccc----cccccc-----------------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLP----FAANID----------------------- 119 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~----------------------- 119 (324)
..+..|+|+|++|||||||+++|.+...+..+.+.+.+.++.--.-. ...++.
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl 107 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL 107 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhc
Confidence 56778999999999999999999997666655555544332211000 000000
Q ss_pred --------------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 120 --------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 120 --------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++...-+.++.+|+....-. .-+.+|.|++|++.++++....+++++-|.|=
T Consensus 108 ~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q--ra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 108 GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred ccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH--HhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 1112222345555555543322 23369999999999999999999999999985
No 387
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.65 E-value=1.3e-07 Score=77.96 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
-.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+... .+ ...... ..-+++.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~--~~------~~~~~~-----------~~i~~~~-- 81 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF--AS------PRDARR-----------AGIAMVY-- 81 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc--CC------HHHHHh-----------cCeEEEE--
Confidence 45678899999999999999999999988777776664433211 00 000000 0112333
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
++|.|+++++..+.+...+++++|+|.|-
T Consensus 82 -qLS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 82 -QLSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred -ecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 29999999999999999999999999995
No 388
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.64 E-value=2.9e-07 Score=76.76 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=64.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..++.+++|+|++|+|||||++.+... .+.+.+.+..+.....+ +-.... .++++.+++... ......
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~----~~~~~q---~~~l~~~~L~~~-~~~~~~ 85 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNK----LIFIDQ---LQFLIDVGLGYL-TLGQKL 85 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCccccccccc----EEEEhH---HHHHHHcCCCcc-ccCCCc
Confidence 456788999999999999999998642 23333322211110000 000011 467788887642 112233
Q ss_pred cccChHHHHHHHHHHHHhCC--CCEEEEeCCC
Q 020549 146 NLFTTKFDEVISLIERRADH--LDYVLVDTPG 175 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG 175 (324)
..+|.++++++..+.+...+ ++++|+|.|-
T Consensus 86 ~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 86 STLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 46999999999999999999 9999999996
No 389
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.64 E-value=1.7e-07 Score=81.16 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=71.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------ccccccc----ccchhc-----------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAA----NIDIRD----------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~----~~~~~~----------- 122 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 105 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL 105 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC
Confidence 4677899999999999999999999877766666554433210 0000000 000111
Q ss_pred -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++.++.+...+++++|+|.|-
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 106 PKSEIKEEVELLLRVLGLTDKA--NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHH--hChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 11244667777775321 2233469999999999999999999999999884
No 390
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.63 E-value=1.8e-07 Score=85.03 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=72.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------ccccccc----cchhcH---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAAN----IDIRDT--------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~----~~~~~~--------- 123 (324)
...+.+++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+.... ..+.+.
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 356788999999999999999999998777666666654432100 0000000 001111
Q ss_pred -------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 -------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+..+++.+++... .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLESK--ADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred CCHHHHHHHHHHHHHHCCChhH--hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 123345667776542 22233469999999999999999999999999984
No 391
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.63 E-value=1.1e-06 Score=74.89 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=73.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------c---cccc----cccchhcH---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------T---LPFA----ANIDIRDT--------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------~---~~~~----~~~~~~~~--------- 123 (324)
-.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.... . .+.. +...+.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 356788999999999999999999999877777766655432110 0 0000 00111111
Q ss_pred --HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 --IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++... .-.....+|.|+++++..+.+...+++++++|.|-
T Consensus 104 ~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 104 GAVGITELCRLFSLEHL--IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred chHHHHHHHHHcCCchh--hhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 134566777776532 12333469999999999999999999999999885
No 392
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.63 E-value=3.5e-07 Score=76.07 Aligned_cols=84 Identities=25% Similarity=0.372 Sum_probs=56.9
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 275 (324)
..+|++++|+|++......... .+ ..+ .++|+++|+||+|+.+......+.+.+.
T Consensus 18 ~~aD~il~v~D~~~~~~~~~~~--i~---~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~------------------ 72 (171)
T cd01856 18 KLVDLVIEVRDARIPLSSRNPL--LE---KIL--GNKPRIIVLNKADLADPKKTKKWLKYFE------------------ 72 (171)
T ss_pred hhCCEEEEEeeccCccCcCChh--hH---hHh--cCCCEEEEEehhhcCChHHHHHHHHHHH------------------
Confidence 4579999999998765443311 11 122 3589999999999975542222221111
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
. ...+++++||+++.|+++|.+.|...++
T Consensus 73 -------~--~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 73 -------S--KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred -------h--cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 0 1356899999999999999999998765
No 393
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.63 E-value=1.9e-07 Score=79.91 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=73.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccc----ccch------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAA----NIDI------------ 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~----~~~~------------ 120 (324)
-.++.+++|+|++|+|||||++.|++...+..+.+.+.+.+..... .+... ...+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 103 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG 103 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC
Confidence 3567789999999999999999999998777766665443321000 00000 0011
Q ss_pred -hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+.++++.+++.... -.....+|.|+++++..+.+...+++++++|.|-
T Consensus 104 ~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 104 PGDDEALWEALAQVGLAGFE--DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred ccHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1112345677788775321 2234569999999999999999999999999884
No 394
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.4e-08 Score=92.32 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=51.4
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+++.++.++||||+.+|. -... .-.+.+ |.+|.|+|++.+++.++. ..++.....++|.+..+||+|
T Consensus 99 wkg~rinlidtpghvdf~--leve-rclrvl-----dgavav~dasagve~qtl-----tvwrqadk~~ip~~~finkmd 165 (753)
T KOG0464|consen 99 WKGHRINLIDTPGHVDFR--LEVE-RCLRVL-----DGAVAVFDASAGVEAQTL-----TVWRQADKFKIPAHCFINKMD 165 (753)
T ss_pred cccceEeeecCCCcceEE--EEHH-HHHHHh-----cCeEEEEeccCCccccee-----eeehhccccCCchhhhhhhhh
Confidence 668899999999999983 2221 112222 788999999999988762 122445567899999999999
Q ss_pred cCCh
Q 020549 243 VAQH 246 (324)
Q Consensus 243 l~~~ 246 (324)
....
T Consensus 166 k~~a 169 (753)
T KOG0464|consen 166 KLAA 169 (753)
T ss_pred hhhh
Confidence 8754
No 395
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.9e-07 Score=79.75 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-----cccccccc----ccchhc---------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA----NIDIRD--------------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~~~----~~~~~~--------------- 122 (324)
.++..++|+|++|+|||||++.|++...+..+.+.+.+.+.. +...+... ...+.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE 107 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHH
Confidence 467789999999999999999999987766666555443211 00000000 000111
Q ss_pred -HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|++|++.++.+...+++++|+|.|-
T Consensus 108 ~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 108 ARERAEELLELVGLSGFE--NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred HHHHHHHHHHHcCChhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 11344667777775321 2233469999999999999999999999999985
No 396
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.63 E-value=7.4e-07 Score=78.56 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=69.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-cccc-ccccchhcH------------HHHHHHHHH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-TLPF-AANIDIRDT------------IRYKEVMKQ 132 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-~~~~-~~~~~~~~~------------~~~~~~~~~ 132 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+...... ..+. .....+.+. ....++++.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 46778999999999999999999998776655554433211110 0000 000001111 113456677
Q ss_pred cCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+++... .-.....+|.|++|++.++.+....++++|+|.|-
T Consensus 103 l~l~~~--~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 103 LQIEQI--LDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred cCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 766432 12233469999999999999999999999999985
No 397
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=8.8e-07 Score=77.52 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------ 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 102 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL 102 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHH
Confidence 356778999999999999999999998777666665544332100 0000000 00010
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|++|++.++.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 103 REHTRLSEEEIREIVLEKLEAVGLRGAE--DLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred hhccCCCHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 11234567777775422 2233469999999999999999999999999985
No 398
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.62 E-value=3.1e-07 Score=82.39 Aligned_cols=87 Identities=25% Similarity=0.387 Sum_probs=60.3
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 275 (324)
..+|++++|+|++.......... . ..+ .++|+|+|+||+|+.+......+.+.+.
T Consensus 20 ~~aDvVl~V~Dar~p~~~~~~~i--~---~~l--~~kp~IiVlNK~DL~~~~~~~~~~~~~~------------------ 74 (276)
T TIGR03596 20 KLVDVVIEVLDARIPLSSRNPMI--D---EIR--GNKPRLIVLNKADLADPAVTKQWLKYFE------------------ 74 (276)
T ss_pred hhCCEEEEEEeCCCCCCCCChhH--H---HHH--CCCCEEEEEEccccCCHHHHHHHHHHHH------------------
Confidence 34799999999987655433211 1 122 3689999999999976543333322221
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~ 316 (324)
. .+.+++++||+++.|++.|.+.|.+.+++..
T Consensus 75 -------~--~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 75 -------E--KGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred -------H--cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 1 1357899999999999999999998887643
No 399
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.62 E-value=8.5e-07 Score=76.65 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=72.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccc----ccchhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAA----NIDIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~----~~~~~~----- 122 (324)
...+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 106 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP 106 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence 34677899999999999999999999877766666554432210 0000000 000010
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (218)
T cd03255 107 LLLAGVPKKERRERAEELLERVGLGDRL--NHYPSELSGGQQQRVAIARALANDPKIILADEPT 168 (218)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhh--hcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence 11345667778775422 2223469999999999999999999999999985
No 400
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=4.1e-07 Score=77.29 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------cccccccc----cchhcHH-----------H
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------MTLPFAAN----IDIRDTI-----------R 125 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------~~~~~~~~----~~~~~~~-----------~ 125 (324)
..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+.+ .
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 103 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAET 103 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHH
Confidence 4677899999999999999999999987777777765543210 00010000 0111111 2
Q ss_pred HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+++.+++.... ......+|.|+++++..+.+...+++++|+|.|-
T Consensus 104 ~~~~l~~~~l~~~~--~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 104 LYAAIHYFKLHDLL--DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred HHHHHHHcCCHhhh--ccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34456666664311 1223459999999999999999999999999885
No 401
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.61 E-value=4.2e-07 Score=79.02 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=81.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccc--------------------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID-------------------------- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------- 119 (324)
-.++.+++++|++||||||+++.|+|...+.++.+.+.+.+|......|...+.
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy 126 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY 126 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH
Confidence 346788999999999999999999999999999999999998763332222220
Q ss_pred -h---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCc
Q 020549 120 -I---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (324)
Q Consensus 120 -~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 177 (324)
+ ....+.+.+.+.+++.+ -.-.+++.+|-|.+.+.+.+.+....++++|+|.|-+.
T Consensus 127 ~Ipd~~F~~r~~~l~eiLdl~~--~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 127 EIPDDEFAERLDFLTEILDLEG--FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hCCHHHHHHHHHHHHHHhcchh--hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 1 11113344445555542 23345567999999999999999999999999999643
No 402
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.61 E-value=1.8e-07 Score=80.84 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------cccccc----ccchhc-----------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAA----NIDIRD----------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~----~~~~~~----------- 122 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+... ...+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 108 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL 108 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC
Confidence 46778999999999999999999998777666666544332100 000000 000111
Q ss_pred -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .......+|.|+++++..+.+...+++++++|.|-
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 109 KGDELTARLEELADRLGMEEL--LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHH--HhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1133556777777532 12234469999999999999999999999999885
No 403
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.61 E-value=1e-06 Score=78.23 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=71.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC--------------cc-cccccccccch--h--cHHHH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AV-MTLPFAANIDI--R--DTIRY 126 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~--------------~~-~~~~~~~~~~~--~--~~~~~ 126 (324)
..++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+. .. ...+...++.. . ....+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~ 114 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA 114 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHH
Confidence 356788999999999999999999998776655554422210 00 00000001110 0 11234
Q ss_pred HHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.++++.+++.... -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 115 ~~~l~~~gl~~~~--~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 115 LQALAAVGLADRA--NEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred HHHHHHcCChhHh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5678888876422 2223469999999999999999999999999985
No 404
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.61 E-value=9e-07 Score=82.18 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=76.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------ccccc-------ccchhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------LPFAA-------NIDIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------~~~~~-------~~~~~~----- 122 (324)
..++..++|+|++|+|||||++.|.+...+..+.+.+.+.+..-.. +.+.. ...+++
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 3567889999999999999999999998888777777665432100 00000 000111
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++++...+++++|+|.|=
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vgL~~~~~--~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVGLEEYEH--RYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 123457788888854322 233469999999999999999999999999984
No 405
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=1.2e-06 Score=76.64 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=72.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~----- 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 111 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMP 111 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHH
Confidence 34677899999999999999999999877766666665433211 00000000 01111
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++..+.+...+++++|+|.|-
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 173 (233)
T PRK11629 112 LLIGKKKPAEINSRALEMLAAVGLEHRAN--HRPSELSGGERQRVAIARALVNNPRLVLADEPT 173 (233)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 113456677888754221 223469999999999999999999999999885
No 406
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.61 E-value=1.1e-06 Score=76.12 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=72.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~----- 122 (324)
..++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence 35677899999999999999999999877766666554433210 00000000 00111
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++..+.+....++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 169 (221)
T TIGR02211 108 LLIGKKSVKEAKERAYEMLEKVGLEHRI--NHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169 (221)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 11244667777775422 2233469999999999999999999999999884
No 407
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.60 E-value=3.9e-07 Score=78.50 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=72.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------ 122 (324)
...+..++|+|++|+|||||++.|.+...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL 104 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHH
Confidence 356778999999999999999999998776666666554432110 0000000 00111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt 165 (214)
T TIGR02673 105 EVRGKKEREIQRRVGAALRQVGLEHK--ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhh--hhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 1123456777777532 12233469999999999999999999999999985
No 408
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.60 E-value=3.3e-07 Score=80.26 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc---------cccccccccc----chhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~~----~~~~---------- 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+.. +...+....+ .+.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 3467889999999999999999999987776666655443321 0000000000 0010
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11234567777775422 2233469999999999999999999999999984
No 409
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.60 E-value=8e-07 Score=81.97 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=75.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccc---cccc----chhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---AANI----DIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~---~~~~----~~~~------ 122 (324)
..++..++|+|++|||||||++.|.+...+..+.+.+.+.+.... .+.+ .... .+.+
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 346778999999999999999999999888777776655543210 0000 0000 0000
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++.++++.+++..... .....+|.|++|++.++++...++++++.|.|-
T Consensus 108 ~~~~~~~~~~~~~v~e~l~~vgL~~~~~--~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 108 ELDNTPKDEIKRKVTELLALVGLGDKHD--SYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 113457788888865332 223469999999999999999999999999885
No 410
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.60 E-value=1.4e-06 Score=77.41 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++.+++++|++|+||||++..|.......+..+.++..|+.- . ..........+..++.. ... .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r----i------~~~~ql~~~~~~~~~~~----~~~--~ 137 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR----I------GTVQQLQDYVKTIGFEV----IAV--R 137 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC----H------HHHHHHHHHhhhcCceE----Eec--C
Confidence 557899999999999999999988765444555554443211 0 00001111111222110 000 0
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
-...+...+..+. ...+.+++|+||||.... .......+.+.+.....+.+++|+++.....+...+ +..+
T Consensus 138 ~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~------~~~f 208 (270)
T PRK06731 138 DEAAMTRALTYFK-EEARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI------ITNF 208 (270)
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH------HHHh
Confidence 0011222222221 123689999999996542 222333444444445567889999986544333222 2333
Q ss_pred hhcCCCeEEEeeccccCCh
Q 020549 228 YKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~ 246 (324)
... -+-=++++|.|-...
T Consensus 209 ~~~-~~~~~I~TKlDet~~ 226 (270)
T PRK06731 209 KDI-HIDGIVFTKFDETAS 226 (270)
T ss_pred CCC-CCCEEEEEeecCCCC
Confidence 332 334789999997653
No 411
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.2e-06 Score=79.09 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=74.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------ccccccc---c--chhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAAN---I--DIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~~~~~~~---~--~~~~------ 122 (324)
-..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+..+. + .+.+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 356788999999999999999999998877766666655432110 0000000 0 0111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++....-.......+|.|++|++.++.+....++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt 172 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 11345678888886211122233469999999999999999999999999985
No 412
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.3e-06 Score=77.55 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=72.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----cccccc----------cccch-------h--
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----MTLPFA----------ANIDI-------R-- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----~~~~~~----------~~~~~-------~-- 121 (324)
-.++.+++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.. .++.. .
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence 35678899999999999999999999877766666554432210 000000 00000 0
Q ss_pred -cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++.... ......+|.|+++++..+.+....++++|+|.|-
T Consensus 104 ~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 104 QRLEIAHQMLKKVGLEGAE--KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred HHHHHHHHHHHHcCChhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 011345677788775321 2234469999999999999999999999999985
No 413
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.60 E-value=2.5e-07 Score=74.66 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=59.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...+..++|+|++|+|||||++.|.+...+..+.+.+.+. .. -+++.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~---------------------------i~~~~-- 69 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VK---------------------------IGYFE-- 69 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EE---------------------------EEEEc--
Confidence 3567789999999999999999999987766555544221 00 02222
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
++|.++++++..+.+...+++++++|.|-
T Consensus 70 -~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 70 -QLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 28999999999999999999999999985
No 414
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=9.5e-07 Score=74.16 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=81.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------------ccccccc--c--c----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------TLPFAAN--I--D---- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------------~~~~~~~--~--~---- 119 (324)
.+.+...+|+||+|+|||||++.|+|...+..+.+.+.+.+.... .+||+.. + .
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 456788999999999999999999999988888888777654321 1111110 0 0
Q ss_pred ------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhC------CCCEEEEeCCCCcchhhhhhhHH
Q 020549 120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPGQIEIFTWSASGA 187 (324)
Q Consensus 120 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~liDtpG~~~~~~~~~~~~ 187 (324)
.++......+|...++..-.+.. ...+|.|.+|++..++.... ..++.|+|.|--.--..+...--
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~--y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl 181 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRD--YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL 181 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccc--hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH
Confidence 01111233445555444333322 22489999999988877632 33688999886332111222233
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 020549 188 IITEAFASTFPTVVTYVVDT 207 (324)
Q Consensus 188 ~~~~~~~~~~~d~iv~vvD~ 207 (324)
.+.+.+....+-+++.+-|-
T Consensus 182 ~laR~la~~g~~V~~VLHDL 201 (259)
T COG4559 182 RLARQLAREGGAVLAVLHDL 201 (259)
T ss_pred HHHHHHHhcCCcEEEEEccc
Confidence 44555554444454444453
No 415
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2.7e-07 Score=79.40 Aligned_cols=105 Identities=21% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------ccccccc----cchhc------------
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAAN----IDIRD------------ 122 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~----~~~~~------------ 122 (324)
++ .++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 46 8999999999999999999998777666666555432110 0000000 01111
Q ss_pred ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 104 SKEVKARVDEVLELVNLGDR--AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHH--HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1123456777777532 12334569999999999999999999999999884
No 416
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.59 E-value=5.5e-08 Score=80.84 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.....++++|.||+|||||+|+|++...
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 3457899999999999999999998654
No 417
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=9.3e-07 Score=82.08 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR----- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~----- 121 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+..-. -+|. ..++. .+
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~ 107 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP 107 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC
Confidence 46778999999999999999999999887777666655432100 0000 00110 01
Q ss_pred --c-HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 --D-TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 --~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ...+.++++.+++..... .....+|.|++|++.++++....++++|+|.|=
T Consensus 108 ~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 108 KAEIEERVAEAARILELEPLLD--RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred HHHHHHHHHHHHHHcCChhHhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 123567788888865332 223469999999999999999999999999984
No 418
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.59 E-value=1.1e-06 Score=82.63 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=74.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc------------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN------------------ 117 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~------------------ 117 (324)
.+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+..... .+....
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 3577889999999999999999999987776666665554321100 000000
Q ss_pred ---cc---hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 118 ---ID---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 118 ---~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+. ..+...+.++++.+++.... -.....+|.|++|++.++++...+++++|+|.|-
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~--~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFA--DRPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 00 01223456778888876422 2234569999999999999999999999999985
No 419
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.58 E-value=3.6e-07 Score=77.81 Aligned_cols=108 Identities=13% Similarity=0.069 Sum_probs=71.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------cccccccc----cchhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAAN----IDIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~----~~~~~---------- 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 34678899999999999999999999877766665554432110 00000000 00111
Q ss_pred --HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++..+.+...+++++++|.|-
T Consensus 103 ~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 103 GAQRTIEDALAAVGLTGFE--DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred CcHHHHHHHHHHcCCHHHh--cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11245567777775421 2233569999999999999999999999999885
No 420
>PRK12289 GTPase RsgA; Reviewed
Probab=98.58 E-value=3.1e-07 Score=84.74 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=57.0
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 275 (324)
+.+|.+++|+|..+.......+...+ ......++|+|+|+||+|+++......+.+.+.
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L---~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~------------------ 146 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFL---VKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQ------------------ 146 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHH---HHHHHCCCCEEEEEEchhcCChHHHHHHHHHHH------------------
Confidence 44699999999865322221222222 233456899999999999987654333322221
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
. .+.+++++||++|.|+++|++.|...
T Consensus 147 -------~--~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 -------Q--WGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred -------h--cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 1 24579999999999999999988653
No 421
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=1.1e-06 Score=81.17 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=74.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cc---ccccc----cchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---PFAAN----IDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~---~~~~~----~~~~~------ 122 (324)
..++..++|+|++|+|||||++.|.+...+..+.+.+.+.+.... .+ +.... ..+.+
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 356788999999999999999999999877777766655432210 00 00000 00111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~~~~--~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 108 ELAGTPKAEIKARVTELLELVGLSDKA--DRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhh--hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11345667788775432 2233469999999999999999999999999885
No 422
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.58 E-value=4.2e-07 Score=78.13 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=71.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc-----ccchhc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA-----NIDIRD-------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~-----~~~~~~-------- 122 (324)
...+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 34677899999999999999999999877666665554432210 0000000 000111
Q ss_pred --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....++++.+++... .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLEGL--RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcHhh--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1123456777777532 12233469999999999999999999999999985
No 423
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.58 E-value=7.4e-07 Score=79.04 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=85.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc---------------------cccc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL---------------------PFAA-------- 116 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~---------------------~~~~-------- 116 (324)
...+.+++|+|-+|+|||||++++-+...++.+.+.+-+.|....+. |..+
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG 130 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG 130 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence 45778899999999999999999988888888888887776542211 1111
Q ss_pred -cc-ch---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHH
Q 020549 117 -NI-DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIIT 190 (324)
Q Consensus 117 -~~-~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~ 190 (324)
.+ .+ ....+..++++..||.......+ +++|.||+|++..+++...+++++|.|.|=. .++..+......+.
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLEGYADKYP--NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 00 00 11124557777888776544433 4799999999999999999999999999842 24434444444444
Q ss_pred HH
Q 020549 191 EA 192 (324)
Q Consensus 191 ~~ 192 (324)
+.
T Consensus 209 ~L 210 (386)
T COG4175 209 EL 210 (386)
T ss_pred HH
Confidence 43
No 424
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=4.1e-07 Score=78.17 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc------cccccccc----ccchhc--------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------VMTLPFAA----NIDIRD-------------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~------~~~~~~~~----~~~~~~-------------- 122 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.. +...+... ...+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE 103 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence 467789999999999999999999987766666655443321 00000000 000111
Q ss_pred --HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|+++++..+.+...+++++++|.|-
T Consensus 104 ~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 104 EARRRIDEWLERLELSEY--ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred HHHHHHHHHHHHcCChHH--HhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1123456777776532 22233469999999999999999999999999885
No 425
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.8e-06 Score=77.48 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=88.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..++..|.++|-+|+||||.+-.|+......++.+.+..-|... . .....+..+-+..|... +...
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR------A----aAiEQL~~w~er~gv~v----I~~~ 201 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR------A----AAIEQLEVWGERLGVPV----ISGK 201 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH------H----HHHHHHHHHHHHhCCeE----EccC
Confidence 45688999999999999999999999988888888775544321 0 11112233333333221 1100
Q ss_pred -ccc-ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCC------cEEEEEEcCCCCCCchhHH
Q 020549 146 -NLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFP------TVVTYVVDTPRSANPMTFM 217 (324)
Q Consensus 146 -~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~------d~iv~vvD~~~~~~~~~~~ 217 (324)
..= ..-....++.+. ..+++++|+||+|-.+- ...+...+.+..+-... +-+++++|+..|.+...+.
T Consensus 202 ~G~DpAaVafDAi~~Ak--ar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 202 EGADPAAVAFDAIQAAK--ARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred CCCCcHHHHHHHHHHHH--HcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 000 111222233333 55899999999994332 33455555554443333 3377777998887655433
Q ss_pred HhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 218 SNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 218 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
. .+...----=++++|+|-..
T Consensus 278 k-------~F~eav~l~GiIlTKlDgtA 298 (340)
T COG0552 278 K-------IFNEAVGLDGIILTKLDGTA 298 (340)
T ss_pred H-------HHHHhcCCceEEEEecccCC
Confidence 2 22221111267899999443
No 426
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.57 E-value=6.2e-07 Score=77.87 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-----ccccccccc------cch---------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAAN------IDI--------------- 120 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~------~~~--------------- 120 (324)
.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.. +...+.... ..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 357789999999999999999999987666665555443210 000000000 000
Q ss_pred -----hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+.++++.+++..... .....+|.|+++++..+.+...+++++|+|.|=
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~llilDEP~ 141 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELAD--RPVGELSGGQRQRVLVARALATRPSVLLLDEPF 141 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 01123456778888764322 233469999999999999999999999999984
No 427
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.57 E-value=3.6e-07 Score=78.21 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-cc----------cc---ccccc----cchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-VM----------TL---PFAAN----IDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-~~----------~~---~~~~~----~~~~~------ 122 (324)
.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+.. .. .. +.... ..+++
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~ 101 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL 101 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHH
Confidence 467789999999999999999999987776666665544311 00 00 00000 00111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 102 KYKKLSKKEKREKKKEALEKVGLNLKL--KQKIYELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCchhhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11344567777774321 2233469999999999999999999999999885
No 428
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.57 E-value=6.1e-07 Score=77.98 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=72.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--cccccccchhc----------------HHHHH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--LPFAANIDIRD----------------TIRYK 127 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~----------------~~~~~ 127 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+..... ..+.....+.+ .....
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 124 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKID 124 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3567889999999999999999999987777776666543321000 00000000000 11234
Q ss_pred HHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
++++.+++.... -.....+|.|+++++..+.+....++++|+|.|-
T Consensus 125 ~~l~~~~l~~~~--~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 170 (224)
T cd03220 125 EIIEFSELGDFI--DLPVKTYSSGMKARLAFAIATALEPDILLIDEVL 170 (224)
T ss_pred HHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 556666765422 2334569999999999999999999999999985
No 429
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=8.3e-07 Score=76.16 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=69.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc--------ccccccchhcHH----------HHH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL--------PFAANIDIRDTI----------RYK 127 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~----------~~~ 127 (324)
.+++.+|+|+|++|||||||++.|++...++.+.+.+.+.-...... ++..++-++..+ .++
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 46788999999999999999999999999988877765542211111 111111111100 122
Q ss_pred HHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC
Q 020549 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (324)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 174 (324)
++.+--.|++ -+..++..+|+||.-++....+...+++++|+|..
T Consensus 130 eIieFaELG~--fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 130 EIIEFAELGD--FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred HHHHHHHHHH--HhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 2322222222 13456667999999998888888888999999976
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.57 E-value=2e-06 Score=80.28 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=78.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc-cCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT-QSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..++++|++||||||++..|+... ...+..+.++..|+.-. ..........+..++.. ..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~----------aA~eQLk~yAe~lgvp~-----~~-- 284 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI----------AAIEQLKRYADTMGMPF-----YP-- 284 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh----------hHHHHHHHHHHhcCCCe-----ee--
Confidence 35679999999999999999998754 34456676655554211 00011112222222211 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhcc---CCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST---FPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~---~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..........+. ..+.+++|+||||.... .......+...+... ...-.++|+|+..+.......
T Consensus 285 --~~~~~~l~~~l~--~~~~D~VLIDTaGr~~r--d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~------ 352 (432)
T PRK12724 285 --VKDIKKFKETLA--RDGSELILIDTAGYSHR--NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV------ 352 (432)
T ss_pred --hHHHHHHHHHHH--hCCCCEEEEeCCCCCcc--CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH------
Confidence 011222233332 25789999999996432 122222333333221 234678899997765333222
Q ss_pred HHHHhhcCCCeEEEeeccccCC
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
+..+...+ +-=+|++|.|-..
T Consensus 353 ~~~f~~~~-~~glIlTKLDEt~ 373 (432)
T PRK12724 353 LKAYESLN-YRRILLTKLDEAD 373 (432)
T ss_pred HHHhcCCC-CCEEEEEcccCCC
Confidence 12232222 3478999999754
No 431
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.57 E-value=4.9e-07 Score=77.48 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=74.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc------ccc---------------h--h-
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA------NID---------------I--R- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~------~~~---------------~--~- 121 (324)
.+++.++++|||+|||||||+|.+++...+..+.+.+.+.+.+-..-.... ++. + .
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~ 106 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHA 106 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhh
Confidence 467888999999999999999999999999888888776654321100000 010 0 0
Q ss_pred -------------------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+....++++.++|....... -..++.+.+.+++++.+...+++++++|.|-
T Consensus 107 ~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~--A~~LsyG~qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 107 RLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP--AGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred hhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch--hhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence 001233556667776643322 2248889999999999999999999999884
No 432
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.57 E-value=5.2e-07 Score=77.66 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------ccccccc----cchhc-------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAAN----IDIRD------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~~~~~~~----~~~~~------- 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 346778999999999999999999998777666666654432100 0000000 00011
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .......+|.|+++++..+.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADK--ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhH--hhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0123456667776532 12233469999999999999999999999999885
No 433
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=8.1e-07 Score=82.46 Aligned_cols=164 Identities=18% Similarity=0.266 Sum_probs=98.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHH-HHH----HHHHHcCCCCCCc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI-RYK----EVMKQFNLGPNGG 140 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~ 140 (324)
.++|+.|++||-+||||||=+..++-.....+..+.|...|+..+.--. .+|.-+ ++. .+++.|.=+ +|+
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvE----QLrtHv~rl~~l~~~~v~lfekG-Ygk 449 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE----QLRTHVERLSALHGTMVELFEKG-YGK 449 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHH----HHHHHHHHHHHhccchhHHHhhh-cCC
Confidence 4588999999999999999999999888888888888777654321100 011111 110 111222111 111
Q ss_pred ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
- -..-.++.+..++ ..+++++++||+|-..- ...+...+.+.+....+|.|+||=-+--+-+..+.....
T Consensus 450 d------~a~vak~AI~~a~--~~gfDVvLiDTAGR~~~--~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~f 519 (587)
T KOG0781|consen 450 D------AAGVAKEAIQEAR--NQGFDVVLIDTAGRMHN--NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKF 519 (587)
T ss_pred C------hHHHHHHHHHHHH--hcCCCEEEEeccccccC--ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHH
Confidence 1 1112233344444 66899999999994332 234555566666667789999998776665555544433
Q ss_pred HHHHHHHhhcCCC---eEEEeeccccCChH
Q 020549 221 LYACSILYKTRLP---LVLAFNKTDVAQHE 247 (324)
Q Consensus 221 ~~~~~~~~~~~~p---~ilv~NK~Dl~~~~ 247 (324)
- ..+.....| --++++|+|-++..
T Consensus 520 n---~al~~~~~~r~id~~~ltk~dtv~d~ 546 (587)
T KOG0781|consen 520 N---RALADHSTPRLIDGILLTKFDTVDDK 546 (587)
T ss_pred H---HHHhcCCCccccceEEEEeccchhhH
Confidence 3 333333333 36799999988754
No 434
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.56 E-value=5.9e-07 Score=78.40 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=71.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----cccccc----ccchhc---------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----TLPFAA----NIDIRD--------------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----~~~~~~----~~~~~~--------------- 122 (324)
.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+.... ..+... ...+.+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 88 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK 88 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence 46778999999999999999999999877766666544332100 000000 000000
Q ss_pred ---HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ---TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 89 ~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred HHHHHHHHHHHHHcCCHHH--HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1123456777777532 22334569999999999999999999999999884
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.56 E-value=2.7e-06 Score=81.23 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=74.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC-c-ceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR-N-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
++.+++++|++||||||++..|.+..... + ..+.++..|+.. + .-...+..+.+.+++....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R--------i--gA~EQLr~~AeilGVpv~~------ 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR--------I--GGHEQLRIYGKILGVPVHA------ 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc--------h--hHHHHHHHHHHHhCCCeec------
Confidence 46789999999999999999999876433 2 255555444310 0 1111122223333322110
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhcc-CCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
........... ....+.+++++||+|.... ..........+... ...-.++|+|+..+..... ...
T Consensus 319 --~~~~~Dl~~aL--~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~------~i~ 385 (484)
T PRK06995 319 --VKDAADLRLAL--SELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN------EVV 385 (484)
T ss_pred --cCCchhHHHHH--HhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH------HHH
Confidence 01111111111 2234678999999995432 11111112222221 1233688899866543222 112
Q ss_pred HHHhhcCCCeEEEeeccccCC
Q 020549 225 SILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+...+ ..-+|+||+|-..
T Consensus 386 ~~f~~~~-~~g~IlTKlDet~ 405 (484)
T PRK06995 386 QAYRGPG-LAGCILTKLDEAA 405 (484)
T ss_pred HHhccCC-CCEEEEeCCCCcc
Confidence 3333333 3457799999654
No 436
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.56 E-value=4.7e-07 Score=78.02 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------cccccccc----cchhc-------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAAN----IDIRD------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~----~~~~~------- 122 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~ 104 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE 104 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence 4677899999999999999999999877766666554433211 00000000 00111
Q ss_pred ---------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++..+.+....++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 105 VTGVPPREIRKRVPAALELVGLSHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11234567777765321 1233469999999999999999999999999885
No 437
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.56 E-value=4.2e-07 Score=78.26 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------ccccccc----ccchhc------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAA----NIDIRD------------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~~----~~~~~~------------ 122 (324)
.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP 103 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC
Confidence 4677899999999999999999999877666665554433210 0000000 000111
Q ss_pred ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 104 KDEIDERVREVAELLQIEHL--LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred HHHHHHHHHHHHHHcCCHHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1123455677776532 12233469999999999999999999999999884
No 438
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.56 E-value=5e-07 Score=78.88 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=71.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------cccccccc----cchhc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAAN----IDIRD-------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~----~~~~~-------- 122 (324)
-.++.+++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 34677899999999999999999999877766666554432110 00000000 00111
Q ss_pred --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|+++++..+.+....++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHITHLR--KSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 11234567777765321 2233469999999999999999999999999884
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.56 E-value=1.1e-06 Score=87.70 Aligned_cols=151 Identities=14% Similarity=0.111 Sum_probs=77.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC-Cc-ceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS-RN-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.+.+|+++|++||||||++..|.+.... .+ ..+.++..|..- + ........+.+.+++.... ..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--------i--gA~eQL~~~a~~~gvpv~~--~~-- 249 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--------I--GALEQLRIYGRILGVPVHA--VK-- 249 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--------h--HHHHHHHHHHHhCCCCccc--cC--
Confidence 4568999999999999999999987632 33 366665544211 0 0111112222333321110 00
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
........+. ...+.+++||||||.... .......+.........+-+++|+|+........ +.. .
T Consensus 250 -----~~~~l~~al~-~~~~~D~VLIDTAGRs~~--d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~---~i~---~ 315 (767)
T PRK14723 250 -----DAADLRFALA-ALGDKHLVLIDTVGMSQR--DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN---EVV---H 315 (767)
T ss_pred -----CHHHHHHHHH-HhcCCCEEEEeCCCCCcc--CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH---HHH---H
Confidence 1111111222 234679999999995332 1122223322222334577899999875332221 111 2
Q ss_pred HHhhc-C-CCeEEEeeccccCCh
Q 020549 226 ILYKT-R-LPLVLAFNKTDVAQH 246 (324)
Q Consensus 226 ~~~~~-~-~p~ilv~NK~Dl~~~ 246 (324)
.+... . -+-=+|++|.|-...
T Consensus 316 ~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 316 AYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred HHhhcccCCCCEEEEeccCCCCC
Confidence 22221 0 133678999997643
No 440
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=5.3e-07 Score=77.52 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=71.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cc-------c---ccccccch--h----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MT-------L---PFAANIDI--R---- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~-------~---~~~~~~~~--~---- 121 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... .. + +...++.. .
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 100 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK 100 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC
Confidence 35678899999999999999999999877666655554432110 00 0 00001100 0
Q ss_pred ----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|+++++..+.+....++++|+|.|-
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 101 LTAEDRQAIEVALARVGLAGLEK--RLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHh--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1113456677777754221 223469999999999999999999999999885
No 441
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.56 E-value=1.5e-06 Score=80.60 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR----- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~----- 121 (324)
..+.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.... -+|. ..++. .+
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~ 107 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG 107 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC
Confidence 45778999999999999999999999887776666654432100 0000 00110 00
Q ss_pred ---cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|++|++..+++....++++|+|.|-
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~--~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSER--KYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0224567888888865322 233469999999999999999999999999994
No 442
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.56 E-value=1.6e-06 Score=79.84 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCcccccccccccchhcH-HHHHHHHHHcCCCCCCccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPAVMTLPFAANIDIRDT-IRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 144 (324)
++.+|+++||.||||||.+-.|..... .....+.++..|. |..+. ..+ ..|.++| ++.. ..+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt----YRIGA----~EQLk~Ya~im---~vp~--~vv~~ 268 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT----YRIGA----VEQLKTYADIM---GVPL--EVVYS 268 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc----chhhH----HHHHHHHHHHh---CCce--EEecC
Confidence 477899999999999999999988766 4556777755442 22221 111 1222222 2211 11111
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
...+.+.+.. ..+.+++|+||+|-... ....-..+...+......-+.+|+++.....+... .+
T Consensus 269 ----~~el~~ai~~----l~~~d~ILVDTaGrs~~--D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke------i~ 332 (407)
T COG1419 269 ----PKELAEAIEA----LRDCDVILVDTAGRSQY--DKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE------II 332 (407)
T ss_pred ----HHHHHHHHHH----hhcCCEEEEeCCCCCcc--CHHHHHHHHHHHhccccceEEEEEecCcchHHHHH------HH
Confidence 1112222222 23679999999995432 22233344444444444556677777544333321 12
Q ss_pred HHHhhcCCCeEEEeeccccCC
Q 020549 225 SILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+...++. =++++|+|-..
T Consensus 333 ~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 333 KQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred HHhccCCcc-eeEEEcccccC
Confidence 233332222 56899999653
No 443
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=5.1e-07 Score=77.45 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------ccccccc----ccchhc------------H
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------MTLPFAA----NIDIRD------------T 123 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------~~~~~~~----~~~~~~------------~ 123 (324)
.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+ .
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE 105 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence 5678899999999999999999999877776666654433110 0000000 000111 1
Q ss_pred HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++... .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 106 ~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 106 LDIAAALEAVGLAPL--AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred HHHHHHHHHcCCHHH--HcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 124566777777532 12233469999999999999999999999999885
No 444
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.55 E-value=1.5e-06 Score=76.47 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=71.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------ccccccc----ccchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAA----NIDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~----~~~~~~------ 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR 104 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcc
Confidence 35677899999999999999999999877666666554433210 0000000 000000
Q ss_pred ------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .......+|.|+++++.++.+...+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 105 LGYKPTWRSLLGRFSEEDKERALSALERVGLADK--AYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred cccccchhhhhccccHHHHHHHHHHHHHcCcHhh--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1123456777776532 12233469999999999999999999999999884
No 445
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=5.1e-07 Score=79.37 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------cccccccc----cchhc---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAAN----IDIRD--------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~----~~~~~--------- 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 35677899999999999999999999877766666554433210 00000000 00111
Q ss_pred -------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++....-.......+|.|++|++.++.+....++++|+|.|-
T Consensus 104 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 104 KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 11345667788876400112233469999999999999999999999999984
No 446
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.55 E-value=5.2e-07 Score=77.40 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccccc----cchhc------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAAN----IDIRD------------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~----~~~~~------------ 122 (324)
.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 103 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR 103 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCc
Confidence 4677899999999999999999999877766666665443210 00000000 01111
Q ss_pred HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 104 ~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 104 KKRIDEVLDVVGLKDSA--KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred HHHHHHHHHHcCCHHHH--hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 11345567777775321 1233469999999999999999999999999885
No 447
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=3.7e-07 Score=77.21 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH-HHHHHHhcCccchhhHHH
Q 020549 197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE-VFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 197 ~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~ 275 (324)
.+|++++|+|+++.... |...+ .....++|+++|+||+|+............+. .+.. +
T Consensus 34 ~ad~il~VvD~~~~~~~---~~~~l----~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-------------~ 93 (190)
T cd01855 34 KKALVVHVVDIFDFPGS---LIPRL----RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA-------------A 93 (190)
T ss_pred CCcEEEEEEECccCCCc---cchhH----HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH-------------h
Confidence 46899999999764322 11111 11234689999999999975432111111111 0000 0
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
. ......+++++||++|.|+++|++.|.+.++
T Consensus 94 ~------~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 94 G------LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred h------cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 0 0011246899999999999999999998775
No 448
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=9.3e-07 Score=76.97 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=76.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----ccc----------c----ccccc---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----MTL----------P----FAANI--------- 118 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----~~~----------~----~~~~~--------- 118 (324)
..++..++|+|++|+|||||++.|.+-..+..+.+.+.+.+... ... | +.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~ 106 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE 106 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence 34677899999999999999999999998887777665544221 000 0 00000
Q ss_pred --ch-h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 119 --DI-R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 119 --~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
.+ + -..++.++++.+++.... ......+|.|.+|++.++.....+++++++|.|.-
T Consensus 107 n~g~~~~e~~~rv~~~l~~vgl~~~~--~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta 167 (235)
T COG1122 107 NLGLPREEIEERVAEALELVGLEELL--DRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167 (235)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhc--cCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence 01 1 122566778888876652 23334699999999999999999999999998863
No 449
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.5e-06 Score=81.23 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=72.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR----- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~----- 121 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... -++. ..++. .+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~ 106 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC
Confidence 46778999999999999999999998877666665544332100 0000 00000 00
Q ss_pred -c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ...+.++++.+++..... .....+|.|++|++.++++...+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~--~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLD--RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 123556788888854222 233469999999999999999999999999985
No 450
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.54 E-value=5.1e-07 Score=77.76 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=71.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC--------------Ccccc-cccc--cccch---------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD--------------PAVMT-LPFA--ANIDI--------- 120 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d--------------~~~~~-~~~~--~~~~~--------- 120 (324)
..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+ +.... .+.+ .++..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~ 102 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF 102 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccc
Confidence 4677899999999999999999999876665555543322 11100 0000 00000
Q ss_pred -----hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+.++++.+++... .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 103 RRLSKADKAKVDEALERVGLSEL--ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHH--HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 011234566777777532 12233469999999999999999999999999985
No 451
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=2e-06 Score=81.52 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=76.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
+..++++|++||||||++..|..... ..+..+.+++.|+... + ....+..+.+..++.... ..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~----~------a~eqL~~~a~~~~vp~~~--~~--- 285 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI----G------AVEQLKTYAKIMGIPVEV--VY--- 285 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH----H------HHHHHHHHHHHhCCceEc--cC---
Confidence 55899999999999999999987654 3456677765554210 0 000111122222221100 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
........+.. ....+++|+||||.... .......+...+. .....-+.+|+++.......... +.
T Consensus 286 ----~~~~l~~~l~~-~~~~DlVlIDt~G~~~~--d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~------~~ 352 (424)
T PRK05703 286 ----DPKELAKALEQ-LRDCDVILIDTAGRSQR--DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI------YK 352 (424)
T ss_pred ----CHHhHHHHHHH-hCCCCEEEEeCCCCCCC--CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH------HH
Confidence 01111112222 23689999999996443 1122223333333 22335667788886543332211 12
Q ss_pred HHhhcCCCeEEEeeccccCC
Q 020549 226 ILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~ 245 (324)
.+...+ +.-++++|+|-..
T Consensus 353 ~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 353 HFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred HhCCCC-CCEEEEecccccc
Confidence 333333 2368999999754
No 452
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.54 E-value=6e-07 Score=83.43 Aligned_cols=107 Identities=20% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCc--ceEEEeccCCccc---------------cccc---ccccc--hh---
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAVM---------------TLPF---AANID--IR--- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~--~~~~i~~~d~~~~---------------~~~~---~~~~~--~~--- 121 (324)
..+..++|+|++|+|||||++.|.+...+.. +.+.+.+.+.... -++. ..++. .+
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~ 108 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK 108 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC
Confidence 4567899999999999999999999887777 6666655432100 0000 00010 00
Q ss_pred -----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|++|++.++++....++++++|.|=
T Consensus 109 ~~~~~~~~~v~~~l~~~gL~~~~~--~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 109 MPKADIAERVADALKLVGLGDAAA--HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCHHHHHHHHHHHHHhcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 0124567788888865332 233479999999999999999999999999984
No 453
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.54 E-value=5e-07 Score=74.76 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=63.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
-.++.+++|+|++|+|||||++.|++...+..+.+.+.+.. .+...+....+. . .++.+. +.+. ..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~-~i~~~~q~~~~~-~--~tv~~n---l~~~-------~~ 89 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE-DLLFLPQRPYLP-L--GTLREQ---LIYP-------WD 89 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCc-eEEEECCCCccc-c--ccHHHH---hhcc-------CC
Confidence 35677899999999999999999999877666655443210 011111111110 0 011111 1111 23
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+|.++++++..+.+...+++++++|.|-
T Consensus 90 ~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 469999999999999999999999999985
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=1e-06 Score=73.74 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=63.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---cccccccchhcHHHHHHHHHHcCCCCCCccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (324)
-.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+..... ......+.. +.....+..+..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~--------~~q~~~~~~~~t~~ 94 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM--------VFQDFALFPHLTVL 94 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE--------EecCCccCCCCCHH
Confidence 3567789999999999999999999987777677666554321100 000000000 00000011100110
Q ss_pred ccccc-cChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 143 TSLNL-FTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
-.... +|.|+++++..+.+...+++++++|.|-
T Consensus 95 ~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 95 ENIALGLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred HheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 00111 8999999999999999999999999985
No 455
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.54 E-value=1.6e-06 Score=80.50 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR----- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~----- 121 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... -++. ..++. .+
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~ 105 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRR 105 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccc
Confidence 46778999999999999999999999877766666655432100 0000 00000 00
Q ss_pred -------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|++|++.++++....++++|+|.|-
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 106 ERPNAAAIKAKVTQLLEMVQLAHLAD--RYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0124556788888864322 233469999999999999999999999999984
No 456
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=6.1e-07 Score=80.20 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=72.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccc----ccchhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAA----NIDIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~----~~~~~~----- 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 126 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFG 126 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHH
Confidence 35678899999999999999999999877766666554432210 0000000 000111
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt 188 (269)
T cd03294 127 LEVQGVPRAEREERAAEALELVGLEGWE--HKYPDELSGGMQQRVGLARALAVDPDILLMDEAF 188 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHh--hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11244667777775422 2223469999999999999999999999999885
No 457
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.53 E-value=7e-07 Score=75.00 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=63.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------ccccccc----chhcHHHHHHHHHHc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------LPFAANI----DIRDTIRYKEVMKQF 133 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~ 133 (324)
-..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+..... ..+...- ......++.+.+...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 3467789999999999999999999998887777776654432110 0000000 000000111111000
Q ss_pred CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+|.|+++++..+.+...+++++|+|.|-
T Consensus 103 ------------~~LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 103 ------------SLLSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred ------------hhcCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 018999999999999999999999999985
No 458
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.53 E-value=1.9e-06 Score=80.40 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=73.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR---- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~---- 121 (324)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.+..-. -+|. ..++. .+
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 116 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT 116 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence 346778999999999999999999998877766665554432100 0000 00110 00
Q ss_pred --c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 --D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 --~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ...+.++++.+++..... .....+|.|++|++.++++....++++|+|.|-
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~--~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEEFAQ--RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred CHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 113456777788764322 233469999999999999999999999999995
No 459
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.53 E-value=1.6e-06 Score=81.12 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=79.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc---------------------cccccccccc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------------VMTLPFAANI------ 118 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~---------------------~~~~~~~~~~------ 118 (324)
...+.+-+++|.+|||||||++.|.|...+..+.+.+.+.... +..++...++
T Consensus 27 v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~ 106 (501)
T COG3845 27 VKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP 106 (501)
T ss_pred ecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence 4567789999999999999999999999888776666544322 1222222221
Q ss_pred ------ch-hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 119 ------DI-RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 119 ------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
+. ..+..+.++++.+|+..+-.... ..++-+.+|++++++++..+.+++|+|.|--
T Consensus 107 ~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa 169 (501)
T COG3845 107 SKGGLIDRRQARARIKELSERYGLPVDPDAKV--ADLSVGEQQRVEILKALYRGARLLILDEPTA 169 (501)
T ss_pred ccccccCHHHHHHHHHHHHHHhCCCCCcccee--ecCCcchhHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11 11235678899999877643222 2489999999999999999999999999963
No 460
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.9e-06 Score=75.67 Aligned_cols=108 Identities=12% Similarity=0.169 Sum_probs=71.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------ 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 356778999999999999999999998776666665544332110 0000000 00111
Q ss_pred ------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|++|++.++.+...+++++|+|.|-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 104 LGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred cccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh--CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 11234556677765321 2233469999999999999999999999999884
No 461
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=2e-06 Score=80.83 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=74.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----------cccc---cc----ccchhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPF---AA----NIDIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----------~~~~---~~----~~~~~~----- 122 (324)
...+..++|+|++|+|||||++.|.+...+..+.+.+.+.+.... .+.+ .. ...+.+
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 456788999999999999999999998877777666655432100 0000 00 000011
Q ss_pred -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~~~~~--~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLENYAH--SYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhh--cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 113456788888864322 233469999999999999999999999999984
No 462
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=7.7e-07 Score=78.25 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc----------------ccccccccc----cchhc----
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------------VMTLPFAAN----IDIRD---- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~----------------~~~~~~~~~----~~~~~---- 122 (324)
.++..++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...+.... ..+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~ 105 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIE 105 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHH
Confidence 467789999999999999999999998777666666554321 000000000 00111
Q ss_pred -------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~laral~~~p~llilDEPt 169 (242)
T PRK11124 106 APCRVLGLSKDQALARAEKLLERLRLKPYA--DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11234556677775322 2233469999999999999999999999999884
No 463
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=2.1e-06 Score=77.15 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=74.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccc-----ccchhc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAA-----NIDIRD-------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~-----~~~~~~-------- 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+..... .+... ...+.+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 3567789999999999999999999998777777766554432100 00000 000111
Q ss_pred --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+..+++.+++... .......+|.|+++++.++.+....++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGMEDF--LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhh--hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1124566777777643 22334469999999999999999999999999884
No 464
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.53 E-value=8.5e-07 Score=77.95 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=72.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------c---cccc----ccchh---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------L---PFAA----NIDIR--------- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------~---~~~~----~~~~~--------- 121 (324)
-.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+..... . +... ...+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~ 104 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPR 104 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc
Confidence 3567789999999999999999999987776666666554321100 0 0000 00011
Q ss_pred ---------------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ---------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++.... ......+|.|+++++..+.+...+++++++|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 105 DKSVFASLFFRLSAEEKDRIEEVLETIGLADEA--DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 111345667777775422 2233469999999999999999999999999885
No 465
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=7.2e-07 Score=77.93 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=72.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------ 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL 107 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHH
Confidence 356788999999999999999999999877776666654432110 0000000 00111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .......+|.|+++++.++.+....++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 108 EIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhh--hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 1123456777777532 12233469999999999999999999999999985
No 466
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.52 E-value=2.3e-06 Score=74.48 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=70.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~------ 122 (324)
.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~ 113 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPA 113 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHH
Confidence 5678899999999999999999999876666555544332210 00000000 00000
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|+++++.++.+...+++++|+|.|-
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 114 LLRGESSRQSRNGAKALLEQLGLGKR--LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1134566777777532 12233469999999999999999999999999985
No 467
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.52 E-value=1.6e-06 Score=75.81 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=80.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
-.++..++|+|.+|+|||||-+.+++-..++.+.+.+-+.+..-.. .......+.++++.+|+...- .....
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------~~~~~~~v~elL~~Vgl~~~~-~~ryP 107 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------KEERRERVLELLEKVGLPEEF-LYRYP 107 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------hhHHHHHHHHHHHHhCCCHHH-hhcCC
Confidence 4577889999999999999999999999999888888666532211 002223577889999866532 22334
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
++||.|++|++.++++...++++++.|.|=-
T Consensus 108 helSGGQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 108 HELSGGQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred cccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence 5799999999999999999999999999963
No 468
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.52 E-value=2.1e-06 Score=79.74 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc--------------cccccc----ccchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------TLPFAA----NIDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~----~~~~~~------ 122 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+... ...+++
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 100 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM 100 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHh
Confidence 46778999999999999999999998777666655544332100 000000 001111
Q ss_pred --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 101 ~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 101 KRARPSERRISFERVIELLGIGHLLG--RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred hccChhHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 113456778888764322 223469999999999999999999999999984
No 469
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=2.1e-06 Score=79.51 Aligned_cols=108 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR---- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~---- 121 (324)
...+..++|+|++|+|||||++.|.+...+..+.+.+.+.+..-. -+|. ..++. .+
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~ 108 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV 108 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC
Confidence 346778999999999999999999999887766666554332100 0010 00010 00
Q ss_pred ---c-HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ---D-TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ---~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ...+.++++.+++..... .....+|.|++|++.++++....++++|+|.|=
T Consensus 109 ~~~~~~~~v~~~l~~~gl~~~~~--r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 109 PKEERKQRVKEALELVDLAGFED--RYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred CHHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 0 124456777888764332 223469999999999999999999999999984
No 470
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.52 E-value=6.8e-07 Score=78.67 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=53.9
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHH
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLT 274 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~ 274 (324)
..+|.+++|+|..........+..++ ..+...++|+++|+||+||.+..... ++.+.+.
T Consensus 35 ~n~D~viiV~d~~~p~~s~~~l~r~l---~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----------------- 94 (245)
T TIGR00157 35 ANIDQIVIVSSAVLPELSLNQLDRFL---VVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR----------------- 94 (245)
T ss_pred ccCCEEEEEEECCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-----------------
Confidence 34588888888764332222221112 22334689999999999997644221 1111111
Q ss_pred HHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 275 NSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 275 ~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
. .+.+++++||++|.|+++||..|..
T Consensus 95 --------~--~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 --------N--IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred --------H--CCCeEEEEecCCchhHHHHHhhhcC
Confidence 1 2468999999999999999998764
No 471
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=2.2e-06 Score=75.18 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=70.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------c----------ccccccccch----h--
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------M----------TLPFAANIDI----R-- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~----------~~~~~~~~~~----~-- 121 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... . ..+...++.. .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 104 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPR 104 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccc
Confidence 34677899999999999999999999877666655554432110 0 0000000000 0
Q ss_pred ----c----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ----D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ...+.++++.+++.... ......+|.|++|++.++.+...+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~ 164 (239)
T cd03296 105 SERPPEAEIRAKVHELLKLVQLDWLA--DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 164 (239)
T ss_pred cccCCHHHHHHHHHHHHHHcCChhhh--hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 11234567777775322 1223469999999999999999999999999884
No 472
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=2.4e-06 Score=79.75 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=78.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC----CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (324)
.+..|+++|++|+||||.+..|...... .+..+.+++.|+... ........+.+.+++.. ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~----------aa~eQL~~~a~~lgvpv----~~ 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI----------GAKKQIQTYGDIMGIPV----KA 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH----------HHHHHHHHHhhcCCcce----Ee
Confidence 4568999999999999999999876432 345666665553210 11111222222222211 00
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCc-EEEEEEcCCCCCCchhHHHhHHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPT-VVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d-~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
..........+. ...+.+++|+||||.... ....-..+.+.+.....+ -+++|+|+..+...... .+
T Consensus 239 -----~~~~~~l~~~L~-~~~~~DlVLIDTaGr~~~--~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~---~~- 306 (388)
T PRK12723 239 -----IESFKDLKEEIT-QSKDFDLVLVDTIGKSPK--DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE---IF- 306 (388)
T ss_pred -----eCcHHHHHHHHH-HhCCCCEEEEcCCCCCcc--CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH---HH-
Confidence 001111111122 235789999999995432 111112333333333333 57899999776433321 11
Q ss_pred HHHHHhhcCCCeEEEeeccccCCh
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
..+... -+-=++++|.|-...
T Consensus 307 --~~~~~~-~~~~~I~TKlDet~~ 327 (388)
T PRK12723 307 --HQFSPF-SYKTVIFTKLDETTC 327 (388)
T ss_pred --HHhcCC-CCCEEEEEeccCCCc
Confidence 222221 134789999997643
No 473
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.52 E-value=7.6e-07 Score=77.91 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=71.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------cccccccc----cchhc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAAN----IDIRD-------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~----~~~~~-------- 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~ 102 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQA 102 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhh
Confidence 35677899999999999999999999876666555554432110 00000000 00000
Q ss_pred ------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 103 RTGSGLLLARARREEREARERAEELLERVGLADL--ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCccch--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1134566777777542 22334469999999999999999999999999885
No 474
>PRK10908 cell division protein FtsE; Provisional
Probab=98.52 E-value=8e-07 Score=77.09 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=71.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------ccccccccc----chhcHH----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAANI----DIRDTI---- 124 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~~----~~~~~~---- 124 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+....+ .+.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHH
Confidence 35678899999999999999999999877766666654433210 000000000 011111
Q ss_pred ------------HHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 125 ------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 125 ------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.++++.+++... .-.....+|.|+++++..+.+....++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 105 IIAGASGDDIRRRVSAALDKVGLLDK--AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhh--hhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 23456677776542 12233469999999999999999999999999985
No 475
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=2.1e-06 Score=73.33 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=66.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhccc---CCcceEEEeccCCcccc------ccccccc-chhcHHHHHHHHHHcCC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAVMT------LPFAANI-DIRDTIRYKEVMKQFNL 135 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~---~~~~~~~i~~~d~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~l 135 (324)
..++..++|+|++|+|||||++.|.+... +..+.+.+.+.+..... ..+...- ......++.+.+....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~- 108 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL- 108 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh-
Confidence 35677899999999999999999999876 55666666554432110 0111100 0000012222221100
Q ss_pred CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
... .......+|.|+++++.++.+...+++++|+|.|-
T Consensus 109 ~~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 109 RCK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred hhc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 000 11233459999999999999999999999999884
No 476
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=5.7e-07 Score=75.62 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccc-------------c---c---------hh
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN-------------I---D---------IR 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------~---~---------~~ 121 (324)
..+-+|.|+|.+|||||||+|.+.|...+.++.+.+.+.|..--....... + . .|
T Consensus 30 ~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~R 109 (263)
T COG1101 30 AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESR 109 (263)
T ss_pred cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence 356679999999999999999999999999999998877754221111100 0 0 00
Q ss_pred -------------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeC
Q 020549 122 -------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173 (324)
Q Consensus 122 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 173 (324)
-+..+.+-+...+++..--....+..+|.|++|.++.+.+....+++.|+|.
T Consensus 110 g~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 110 GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred CcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 0112233444555554434445666799999999999999999999999995
No 477
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.7e-06 Score=78.54 Aligned_cols=135 Identities=18% Similarity=0.229 Sum_probs=78.9
Q ss_pred ccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc
Q 020549 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (324)
Q Consensus 63 ~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (324)
.+...++-.|.++|-.|+||||.+-.|.......++.+..+--|.... + . .+++.. .-...+..-.+...
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa----g-A---fDQLkq--nA~k~~iP~ygsyt 164 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA----G-A---FDQLKQ--NATKARVPFYGSYT 164 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc----c-h---HHHHHH--HhHhhCCeeEeccc
Confidence 334556778999999999999999999999888888877754443211 0 0 111100 00011111111000
Q ss_pred c--cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh
Q 020549 143 T--SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT 215 (324)
Q Consensus 143 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~ 215 (324)
. +....+.++ -+....+++++|+||+|-|.- ...+..++.+......+|-+|||+|++-+.....
T Consensus 165 e~dpv~ia~egv------~~fKke~fdvIIvDTSGRh~q--e~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 165 EADPVKIASEGV------DRFKKENFDVIIVDTSGRHKQ--EASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred ccchHHHHHHHH------HHHHhcCCcEEEEeCCCchhh--hHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 0 000011111 122256899999999996553 2345556666666677899999999988765544
No 478
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.51 E-value=1.5e-06 Score=85.24 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=71.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc---------cccccccccc---chhcH----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI---DIRDT---------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~~---~~~~~---------- 123 (324)
-+++.+++|+|++|+|||||++.|++...+..+.+.+.+.+.. +...+..+.+ .+++.
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~ 437 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATD 437 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCH
Confidence 4578899999999999999999999998888777766554321 1111111100 11222
Q ss_pred HHHHHHHHHcCCCC-----CCcccc----cccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 IRYKEVMKQFNLGP-----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ~~~~~~~~~~~l~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++..++.. ..|.-+ .=..+|.|++|++..+++...+++++++|.|-
T Consensus 438 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T 498 (529)
T TIGR02868 438 EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 498 (529)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 22334455444421 012111 11238999999999999999999999999886
No 479
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.51 E-value=2.6e-06 Score=80.06 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=74.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC--cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
..+.+|+++|++|+||||++..|.+..... ...+.++..|... .+ .... ...+.+.+++....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r----ig----alEQ--L~~~a~ilGvp~~~----- 253 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR----IG----GHEQ--LRIYGKLLGVSVRS----- 253 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc----hh----HHHH--HHHHHHHcCCceec-----
Confidence 456789999999999999999998753211 1223332222110 00 0111 12223333332111
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
...... ...+.....+.+++++||+|.... .......+..........-.++|+++.........+ +
T Consensus 254 ---v~~~~d--l~~al~~l~~~d~VLIDTaGrsqr--d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~------~ 320 (420)
T PRK14721 254 ---IKDIAD--LQLMLHELRGKHMVLIDTVGMSQR--DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV------I 320 (420)
T ss_pred ---CCCHHH--HHHHHHHhcCCCEEEecCCCCCcc--hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH------H
Confidence 011111 112222345789999999996542 111222222221112245678889987554333222 1
Q ss_pred HHHhhcCCCeEEEeeccccCCh
Q 020549 225 SILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
..+...+ .-=++++|.|-...
T Consensus 321 ~~f~~~~-~~~~I~TKlDEt~~ 341 (420)
T PRK14721 321 SAYQGHG-IHGCIITKVDEAAS 341 (420)
T ss_pred HHhcCCC-CCEEEEEeeeCCCC
Confidence 2222222 33678999997653
No 480
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.51 E-value=7.4e-07 Score=76.81 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=72.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccc----------cccch--h----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFA----------ANIDI--R---- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~----------~~~~~--~---- 121 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.. .++.. .
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~ 100 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK 100 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC
Confidence 35678899999999999999999999887766666654433210 000000 00000 0
Q ss_pred ----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 ----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++.... -.....+|.|+++++.++.+....++++++|.|-
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 101 LNAEQQEKVVDAAQQVGIADYL--DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred ccHHHHHHHHHHHHHcCcHHHh--hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 111345567777775322 2233469999999999999999999999999885
No 481
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=2.5e-06 Score=79.20 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=73.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----------cc---cccc----ccchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TL---PFAA----NIDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----------~~---~~~~----~~~~~~------ 122 (324)
..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+.... .. +... ...+.+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 101 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGM 101 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhh
Confidence 46778999999999999999999998777666666544332100 00 0000 001111
Q ss_pred ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|++|++.++++...+++++|+|.|-
T Consensus 102 ~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 102 AKSMVAQFDKIVALLGIEPLL--DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred hhhhHHHHHHHHHHcCCchhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 12345678888886422 2233469999999999999999999999999984
No 482
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.51 E-value=8.8e-07 Score=76.88 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=72.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------cccccccc----cchhcH------------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------MTLPFAAN----IDIRDT------------ 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------~~~~~~~~----~~~~~~------------ 123 (324)
-.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+... ...+.... ..+.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~ 102 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD 102 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence 35678899999999999999999999877666665554432110 00000000 011111
Q ss_pred HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....++++.+++... .......+|.|+++++..+.+...+++++++|.|-
T Consensus 103 ~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 103 SRIDEVLNIVDLTNT--GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred HHHHHHHHHcCCcHH--HhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 133566777777542 12233469999999999999999999999999884
No 483
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=8.3e-07 Score=76.51 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=70.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~------ 122 (324)
.+ ..++|+|++|+|||||++.|.+...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL 100 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence 45 7799999999999999999999877666665554432210 00000000 00111
Q ss_pred --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .-.....+|.|+++++.++.+...+++++++|.|-
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 159 (214)
T cd03297 101 KRKRNREDRISVDELLDLLGLDHL--LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159 (214)
T ss_pred hhCCHHHHHHHHHHHHHHcCCHhH--hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1134566777777532 22334469999999999999999999999999884
No 484
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.50 E-value=7.5e-07 Score=77.51 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=70.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc-----cCCcceEEEeccCCcccc------------cccc---------cccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT-----QSRNIRGYVMNLDPAVMT------------LPFA---------ANID 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~-----~~~~~~~~i~~~d~~~~~------------~~~~---------~~~~ 119 (324)
-..+..++|+|++|+|||||++.|.+.. .+..+.+.+.+.+..... .+.. .++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 102 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA 102 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHH
Confidence 3467889999999999999999999987 665565555443321000 0000 0000
Q ss_pred h--h---------cHHHHHHHHHHcCCCCCCccccc--ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 120 I--R---------DTIRYKEVMKQFNLGPNGGILTS--LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 120 ~--~---------~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. + ....+.++++.+++.... ... ...+|.|++|++.++.+...+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 169 (227)
T cd03260 103 YGLRLHGIKLKEELDERVEEALRKAALWDEV--KDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT 169 (227)
T ss_pred hHHHhcCCCcHHHHHHHHHHHHHHcCCChHH--hccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 0 011234567777775321 111 2569999999999999999999999999884
No 485
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.50 E-value=2.9e-06 Score=74.29 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=69.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------cccc-ccc----ccchhc---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLP-FAA----NIDIRD--------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~-~~~----~~~~~~--------- 122 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+ ... ...+++
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~ 123 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY 123 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc
Confidence 35678899999999999999999999876665555543332100 0000 000 000011
Q ss_pred -------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
......+++.+++... .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 124 ~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 124 DLPPARFKKRLDELSELLDLEEL--LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhH--hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0123455666666431 22234469999999999999999999999999885
No 486
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.6e-06 Score=82.90 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=73.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcHH--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDTI-------- 124 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~~-------- 124 (324)
-+++.+++++|++|+|||||++.|.|...+..+...+.+.+...-+ .+..+.+ .+++.+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s 423 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS 423 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence 5677889999999999999999999998888777777655432211 1111111 122222
Q ss_pred --HHHHHHHHcCCCC----CCcccccc----cccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 125 --RYKEVMKQFNLGP----NGGILTSL----NLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 125 --~~~~~~~~~~l~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
...++++..++.. +.|.-+.. ..+|.|+.|++..+++...+.++.++|.|--
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA 485 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 2334444433322 12333222 2389999999999999999999999999863
No 487
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.49 E-value=9e-07 Score=77.69 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------cccccccc----cchhc--------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAAN----IDIRD-------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------~~~~~~~~----~~~~~-------- 122 (324)
.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 104 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR 104 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence 4677899999999999999999999877766666655433210 00000000 00000
Q ss_pred ---------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... ......+|.|+++++..+.+...+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 105 VRGASKEEAEKQARELLAKVGLAERA--HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChHHH--hcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11234667777775421 2233469999999999999999999999999884
No 488
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=4.3e-06 Score=72.12 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=70.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------ccccccccc----cchhcH-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAAN----IDIRDT----------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~~~~~~~~----~~~~~~----------- 123 (324)
-..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+.. +...+.... ..+.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 113 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence 3567789999999999999999999987766665555443211 000000000 011111
Q ss_pred --HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 --IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+++.+++... .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 114 ~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 114 AKQMPGSALAIVGLAGY--EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred HHHHHHHHHHHcCChhh--ccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 122455666776532 22333469999999999999999999999999986
No 489
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=9.2e-07 Score=77.24 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=71.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cc----------cccccccch-------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MT----------LPFAANIDI------- 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~----------~~~~~~~~~------- 120 (324)
-..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+... .. .+...++..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 101 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLK 101 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccC
Confidence 34677899999999999999999999877666655554432110 00 000000100
Q ss_pred ---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+.++++.+++... +-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 102 LNAAQREKLHAIARQMGIEDL--LARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred CCHHHHHHHHHHHHHcCcHHH--HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 001124556777776532 22333469999999999999999999999999984
No 490
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.1e-06 Score=79.38 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~ 97 (324)
.+...+|++.|..++||||++|+++....-.+
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~ 137 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPS 137 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcc
Confidence 34677899999999999999999998865543
No 491
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=3.3e-06 Score=75.89 Aligned_cols=108 Identities=10% Similarity=0.065 Sum_probs=73.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccc-----c---ccccch--h-
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLP-----F---AANIDI--R- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~-----~---~~~~~~--~- 121 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+.... ..+ . ..++.. +
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN 109 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh
Confidence 356788999999999999999999998877777666655432110 000 0 000000 0
Q ss_pred -------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|++|++.++.+....++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 110 KGIPHEEMKERVNEALELVGMQDFKE--REPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHhHhh--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0123456778888764221 223469999999999999999999999999885
No 492
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.47 E-value=4.8e-07 Score=83.30 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=58.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+++|+|.||+|||||+|+|++..... ..++|++|. .++-|++.-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~------------~a~ypftTi------------------~p~~g~v~v~d--- 49 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNE------------AANPPFTTI------------------EPNAGVVNPSD--- 49 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccc------------cCCCCCCCC------------------CCceeEEEech---
Confidence 679999999999999999999886511 344455531 11222211000
Q ss_pred hHHHHHHHHHHHH-hCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCC
Q 020549 150 TKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTP 208 (324)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~ 208 (324)
....++....... .....+.|+|.||+..-...+ .++..+...++ .+|++++||++.
T Consensus 50 ~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir--~~d~l~hVvr~f 108 (368)
T TIGR00092 50 PRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIR--EVDIIQHVVRCF 108 (368)
T ss_pred hHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHH--hCCEEEEEEeCC
Confidence 0000000000000 113468899999987643222 24555555554 368999999985
No 493
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=3.2e-06 Score=75.65 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=71.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc-----ccchhcH-------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA-----NIDIRDT------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~-----~~~~~~~------- 123 (324)
-..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 111 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLEN 111 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHH
Confidence 35677899999999999999999999977766666554433211 0000000 0001111
Q ss_pred ---------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 ---------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++.... -.....+|.|+++++.++.+....++++|+|.|-
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 112 KKVPPKKMKDIIDDLAKKVGMEDYL--DKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1234556677765321 1223469999999999999999999999999985
No 494
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.47 E-value=1.2e-06 Score=77.45 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=69.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec--------cCCcccc-ccccc--ccch---hcHHHHHHHHH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN--------LDPAVMT-LPFAA--NIDI---RDTIRYKEVMK 131 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~--------~d~~~~~-~~~~~--~~~~---~~~~~~~~~~~ 131 (324)
-..+.+++|+|++|+|||||++.|++...+..+.+.+.+ .++.... .+.+. .+.. .....+.++++
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 356788999999999999999999998766554443321 1111100 00000 0000 01123456677
Q ss_pred HcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+++... .-.....+|.|+++++..+.+....++++|+|.|-
T Consensus 107 ~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 107 RVQAGHL--IDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred HcCChHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 7777532 12234469999999999999999999999999985
No 495
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=8.3e-07 Score=78.03 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=71.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccccc---chh------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DIR------------ 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~---~~~------------ 121 (324)
..+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+....+ .+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~ 106 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGE 106 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCc
Confidence 4677899999999999999999999877766666655433210 000000000 000
Q ss_pred cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++... -.-.....+|.|+++++.++.+...+++++|+|.|-
T Consensus 107 ~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 107 KNVDVEYYLSIVGLNKE-YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred HHHHHHHHHHHcCCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 01234566777777421 011233469999999999999999999999999985
No 496
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.47 E-value=1.1e-06 Score=73.52 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=62.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc-c
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT-S 144 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 144 (324)
-..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+...........+.. +.....+.+ ..+.. -
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--------~~q~~~~~~-~tv~~~i 95 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV--------LNQRPYLFD-TTLRNNL 95 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE--------EccCCeeec-ccHHHhh
Confidence 3567789999999999999999999998777666665443221000000000000 000000000 00000 0
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+|.|+++++..+++...+++++++|.|-
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3459999999999999999999999999985
No 497
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.47 E-value=3.9e-06 Score=75.03 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=71.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------cccccccc----cchhcH-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAAN----IDIRDT----- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~----~~~~~~----- 123 (324)
...+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 35677899999999999999999999877666665554432110 00000000 001111
Q ss_pred ------------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 ------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++... .-.....+|.|+++++.++.+....++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 110 REHTQLPAPLLHSTVMMKLEAVGLRGA--AKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred HHccCCCHHHHHHHHHHHHHHcCChhh--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 122345677777532 22234569999999999999999999999999985
No 498
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=4.1e-06 Score=75.23 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=73.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc-----ccchhc--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA-----NIDIRD-------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~-----~~~~~~-------- 122 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+... ...+.+
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~ 106 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN 106 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence 35678899999999999999999999887777766665443210 0000000 000010
Q ss_pred --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... -.....+|.|+++++..+.+....++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 107 LGLDEETVAHRVSSALHMLGLEELR--DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHh--cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11245667777775422 2233469999999999999999999999999884
No 499
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.47 E-value=1.4e-06 Score=76.97 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=70.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------------cccccccc----cchhcH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAAN----IDIRDT 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------------~~~~~~~~----~~~~~~ 123 (324)
-.++..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+.... ..+.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLEN 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHH
Confidence 35677899999999999999999999876665555543322110 00000000 001110
Q ss_pred -----------------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 -----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 -----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++.... -.....+|.|+++++.++.+...+++++|+|.|-
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt 172 (250)
T PRK11264 106 IIEGPVIVKGEPKEEATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172 (250)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh--hCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1234567777775321 2233469999999999999999999999999985
No 500
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.2e-06 Score=79.00 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=72.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccc---cc--chhc----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAA---NI--DIRD---- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~---~~--~~~~---- 122 (324)
...+..++|+|++|+|||||++.|++...+..+.+.+.+.+... ...+..+ -+ .+.+
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 35678899999999999999999999987777766665543210 0001000 00 0011
Q ss_pred ------------HHHHHHHHHHcCCCC-CCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------------TIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------------~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.. .. -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt 173 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLSEDLI--SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 113456677777742 11 1223459999999999999999999999999984
Done!