Query 020549
Match_columns 324
No_of_seqs 274 out of 2831
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 99.9 1.6E-24 5.5E-29 196.1 11.9 178 66-321 7-189 (308)
2 1yrb_A ATP(GTP)binding protein 99.9 2.6E-23 9E-28 183.5 18.0 244 66-316 11-259 (262)
3 4dkx_A RAS-related protein RAB 99.9 9.3E-24 3.2E-28 181.3 10.0 165 68-314 12-176 (216)
4 1wf3_A GTP-binding protein; GT 99.9 1.5E-23 5.3E-28 188.8 9.3 170 68-320 6-179 (301)
5 4dhe_A Probable GTP-binding pr 99.9 1.3E-21 4.6E-26 168.1 15.6 175 67-314 27-211 (223)
6 3pqc_A Probable GTP-binding pr 99.9 6.6E-21 2.3E-25 159.8 18.2 169 67-314 21-194 (195)
7 2wji_A Ferrous iron transport 99.9 9.7E-22 3.3E-26 161.3 12.4 159 70-312 4-163 (165)
8 1ega_A Protein (GTP-binding pr 99.9 4.7E-22 1.6E-26 179.3 8.7 171 68-320 7-181 (301)
9 3bwd_D RAC-like GTP-binding pr 99.9 5.4E-21 1.9E-25 158.7 13.8 163 67-312 6-179 (182)
10 4bas_A ADP-ribosylation factor 99.9 2.1E-21 7.3E-26 163.6 11.2 169 65-316 13-191 (199)
11 3b1v_A Ferrous iron uptake tra 99.9 6.2E-21 2.1E-25 169.3 14.6 160 69-312 3-162 (272)
12 1svi_A GTP-binding protein YSX 99.9 1.8E-20 6.2E-25 157.4 16.8 170 66-313 20-194 (195)
13 1zj6_A ADP-ribosylation factor 99.9 7.9E-21 2.7E-25 158.9 14.2 168 67-320 14-184 (187)
14 1wms_A RAB-9, RAB9, RAS-relate 99.8 6.5E-21 2.2E-25 157.5 12.9 163 68-314 6-174 (177)
15 2lkc_A Translation initiation 99.8 1.5E-21 5E-26 161.5 8.8 169 66-316 5-173 (178)
16 1c1y_A RAS-related protein RAP 99.8 1.7E-21 5.8E-26 159.2 8.9 161 69-312 3-165 (167)
17 4dsu_A GTPase KRAS, isoform 2B 99.8 1.3E-21 4.6E-26 163.2 8.2 167 68-319 3-171 (189)
18 1g16_A RAS-related protein SEC 99.8 1E-20 3.6E-25 154.9 13.0 161 69-314 3-165 (170)
19 1kao_A RAP2A; GTP-binding prot 99.8 1.7E-21 5.8E-26 158.9 8.1 161 69-313 3-165 (167)
20 1z08_A RAS-related protein RAB 99.8 3.4E-21 1.2E-25 158.0 9.6 165 68-314 5-169 (170)
21 1vg8_A RAS-related protein RAB 99.8 8E-21 2.7E-25 161.1 12.0 166 67-316 6-177 (207)
22 2ew1_A RAS-related protein RAB 99.8 6.3E-21 2.2E-25 161.9 11.3 165 67-315 24-190 (201)
23 1mh1_A RAC1; GTP-binding, GTPa 99.8 5E-21 1.7E-25 159.3 10.4 175 68-315 4-181 (186)
24 2g6b_A RAS-related protein RAB 99.8 3.7E-21 1.3E-25 159.4 9.5 166 67-315 8-175 (180)
25 2il1_A RAB12; G-protein, GDP, 99.8 3.3E-21 1.1E-25 162.1 9.3 165 66-313 23-189 (192)
26 4gzl_A RAS-related C3 botulinu 99.8 3E-21 1E-25 164.1 9.1 175 67-311 28-202 (204)
27 3dz8_A RAS-related protein RAB 99.8 7.5E-21 2.6E-25 159.6 11.4 166 66-315 20-187 (191)
28 2a5j_A RAS-related protein RAB 99.8 1.7E-20 5.7E-25 157.5 13.4 168 66-315 18-185 (191)
29 3iby_A Ferrous iron transport 99.8 8.7E-21 3E-25 167.0 11.8 159 70-311 2-164 (256)
30 3oes_A GTPase rhebl1; small GT 99.8 1.6E-21 5.6E-26 165.1 6.9 170 65-318 20-191 (201)
31 2fg5_A RAB-22B, RAS-related pr 99.8 4E-21 1.4E-25 161.5 9.3 169 66-316 20-188 (192)
32 2j1l_A RHO-related GTP-binding 99.8 4.4E-21 1.5E-25 164.3 9.6 177 67-316 32-211 (214)
33 3a1s_A Iron(II) transport prot 99.8 5.8E-21 2E-25 168.4 10.7 163 68-313 4-166 (258)
34 1ky3_A GTP-binding protein YPT 99.8 2E-20 6.8E-25 155.0 13.2 168 67-315 6-179 (182)
35 2gf9_A RAS-related protein RAB 99.8 1E-20 3.5E-25 158.4 11.6 165 67-315 20-186 (189)
36 1r8s_A ADP-ribosylation factor 99.8 3.6E-20 1.2E-24 151.0 14.5 158 70-313 1-161 (164)
37 3bc1_A RAS-related protein RAB 99.8 1.1E-20 3.6E-25 158.2 11.5 176 67-316 9-187 (195)
38 2iwr_A Centaurin gamma 1; ANK 99.8 3.5E-21 1.2E-25 159.5 8.3 162 68-317 6-172 (178)
39 3reg_A RHO-like small GTPase; 99.8 4.6E-21 1.6E-25 161.3 9.1 166 66-314 20-188 (194)
40 2dyk_A GTP-binding protein; GT 99.8 1.3E-20 4.3E-25 153.1 11.4 157 70-312 2-160 (161)
41 2hup_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 159.5 12.1 165 67-315 27-194 (201)
42 1upt_A ARL1, ADP-ribosylation 99.8 3.6E-20 1.2E-24 151.9 14.2 162 67-314 5-169 (171)
43 2j0v_A RAC-like GTP-binding pr 99.8 1.1E-20 3.7E-25 161.2 11.3 166 67-315 7-181 (212)
44 2qu8_A Putative nucleolar GTP- 99.8 8.4E-20 2.9E-24 157.8 17.0 175 67-317 27-208 (228)
45 2atx_A Small GTP binding prote 99.8 1.5E-20 5.1E-25 158.0 11.8 174 67-313 16-192 (194)
46 3q3j_B RHO-related GTP-binding 99.8 8.6E-21 2.9E-25 162.6 10.5 181 66-319 24-208 (214)
47 1zd9_A ADP-ribosylation factor 99.8 5.1E-21 1.7E-25 160.4 8.8 163 66-313 19-184 (188)
48 3kkq_A RAS-related protein M-R 99.8 9.4E-21 3.2E-25 157.6 10.3 165 66-314 15-182 (183)
49 3tkl_A RAS-related protein RAB 99.8 1.4E-20 4.7E-25 158.2 11.4 165 67-315 14-180 (196)
50 2fn4_A P23, RAS-related protei 99.8 6.2E-21 2.1E-25 157.9 9.2 166 67-316 7-174 (181)
51 2h17_A ADP-ribosylation factor 99.8 2.7E-20 9.4E-25 154.8 13.1 158 66-311 18-180 (181)
52 2oil_A CATX-8, RAS-related pro 99.8 9.4E-21 3.2E-25 159.1 10.3 167 67-315 23-189 (193)
53 2wjg_A FEOB, ferrous iron tran 99.8 2.1E-20 7E-25 156.2 12.3 166 68-316 6-171 (188)
54 2gj8_A MNME, tRNA modification 99.8 4.4E-21 1.5E-25 158.7 8.0 162 68-314 3-166 (172)
55 2gco_A H9, RHO-related GTP-bin 99.8 1.7E-20 5.7E-25 159.0 11.7 173 68-313 24-199 (201)
56 2nzj_A GTP-binding protein REM 99.8 3.6E-20 1.2E-24 152.5 13.4 165 68-315 3-170 (175)
57 1z0f_A RAB14, member RAS oncog 99.8 9.6E-21 3.3E-25 156.5 9.9 165 67-313 13-177 (179)
58 2q3h_A RAS homolog gene family 99.8 1.5E-20 5.2E-25 158.9 11.3 178 66-316 17-197 (201)
59 3t5g_A GTP-binding protein RHE 99.8 2.4E-21 8.1E-26 160.9 6.2 167 68-318 5-173 (181)
60 2efe_B Small GTP-binding prote 99.8 1.1E-20 3.7E-25 156.7 10.0 166 67-314 10-175 (181)
61 3t1o_A Gliding protein MGLA; G 99.8 5E-20 1.7E-24 154.6 14.3 117 165-315 73-193 (198)
62 2hjg_A GTP-binding protein ENG 99.8 1.3E-20 4.5E-25 178.4 11.9 173 67-315 173-350 (436)
63 2fv8_A H6, RHO-related GTP-bin 99.8 2.3E-20 7.8E-25 158.8 12.3 173 68-313 24-199 (207)
64 1u8z_A RAS-related protein RAL 99.8 8.3E-21 2.8E-25 154.9 9.1 160 69-313 4-166 (168)
65 3q72_A GTP-binding protein RAD 99.8 1.3E-20 4.3E-25 154.0 10.2 160 69-314 2-164 (166)
66 2a9k_A RAS-related protein RAL 99.8 9.8E-21 3.4E-25 157.5 9.6 165 68-316 17-183 (187)
67 1zbd_A Rabphilin-3A; G protein 99.8 2.3E-20 8E-25 158.0 12.0 166 68-315 7-172 (203)
68 1f6b_A SAR1; gtpases, N-termin 99.8 9.9E-21 3.4E-25 160.1 9.7 171 67-311 23-196 (198)
69 3q85_A GTP-binding protein REM 99.8 1.6E-20 5.5E-25 153.9 10.6 163 70-314 3-167 (169)
70 1m2o_B GTP-binding protein SAR 99.8 1.7E-20 5.7E-25 157.7 10.8 167 67-311 21-189 (190)
71 1x3s_A RAS-related protein RAB 99.8 8.1E-21 2.8E-25 159.4 8.9 166 68-321 14-185 (195)
72 3cph_A RAS-related protein SEC 99.8 2.7E-20 9.3E-25 158.6 12.2 164 67-315 18-183 (213)
73 1fzq_A ADP-ribosylation factor 99.8 4E-20 1.4E-24 154.1 12.8 161 67-314 14-178 (181)
74 3llu_A RAS-related GTP-binding 99.8 1.3E-19 4.3E-24 152.9 15.9 176 66-312 17-195 (196)
75 1ksh_A ARF-like protein 2; sma 99.8 1.5E-20 5E-25 156.9 10.0 163 67-315 16-181 (186)
76 1z2a_A RAS-related protein RAB 99.8 2.1E-20 7.2E-25 152.8 10.8 161 68-313 4-166 (168)
77 3i8s_A Ferrous iron transport 99.8 1.5E-20 5E-25 167.3 10.5 162 69-313 3-168 (274)
78 1r2q_A RAS-related protein RAB 99.8 1.1E-20 3.7E-25 154.7 8.9 161 68-312 5-167 (170)
79 2bme_A RAB4A, RAS-related prot 99.8 2.2E-20 7.5E-25 155.6 10.9 166 67-316 8-175 (186)
80 2hxs_A RAB-26, RAS-related pro 99.8 1.1E-20 3.6E-25 156.3 8.9 165 68-315 5-174 (178)
81 2fh5_B SR-beta, signal recogni 99.8 2.1E-20 7.1E-25 159.7 10.8 188 67-311 5-213 (214)
82 4dcu_A GTP-binding protein ENG 99.8 3.1E-20 1.1E-24 176.8 13.2 172 67-315 193-370 (456)
83 2bcg_Y Protein YP2, GTP-bindin 99.8 2.8E-20 9.5E-25 158.0 11.5 165 68-314 7-171 (206)
84 2o52_A RAS-related protein RAB 99.8 2.6E-20 8.9E-25 157.7 11.1 168 67-316 23-190 (200)
85 3sjy_A Translation initiation 99.8 2E-19 6.9E-24 168.5 18.3 115 166-313 75-191 (403)
86 2y8e_A RAB-protein 6, GH09086P 99.8 1.1E-20 3.9E-25 156.0 8.7 161 69-313 14-176 (179)
87 2bov_A RAla, RAS-related prote 99.8 1.1E-20 3.9E-25 159.9 8.7 165 67-315 12-178 (206)
88 2fu5_C RAS-related protein RAB 99.8 6.5E-21 2.2E-25 158.5 7.0 168 68-317 7-174 (183)
89 2p5s_A RAS and EF-hand domain 99.8 1.4E-20 4.8E-25 159.1 8.9 170 66-313 25-196 (199)
90 3tw8_B RAS-related protein RAB 99.8 2.5E-20 8.5E-25 154.2 10.2 169 67-318 7-175 (181)
91 3cbq_A GTP-binding protein REM 99.8 1.7E-20 6E-25 158.3 9.4 166 65-314 19-188 (195)
92 1z0j_A RAB-22, RAS-related pro 99.8 2.3E-20 8E-25 152.8 9.9 162 68-312 5-167 (170)
93 3c5c_A RAS-like protein 12; GD 99.8 6.9E-21 2.3E-25 159.6 6.8 162 66-313 18-185 (187)
94 3k53_A Ferrous iron transport 99.8 2.3E-20 7.9E-25 165.8 10.4 163 69-314 3-166 (271)
95 1moz_A ARL1, ADP-ribosylation 99.8 3.6E-20 1.2E-24 153.9 10.8 162 67-315 16-181 (183)
96 3clv_A RAB5 protein, putative; 99.8 9E-20 3.1E-24 153.7 13.3 112 166-314 93-204 (208)
97 4djt_A GTP-binding nuclear pro 99.8 4E-21 1.4E-25 164.6 5.1 168 67-317 9-178 (218)
98 2ce2_X GTPase HRAS; signaling 99.8 3.2E-20 1.1E-24 151.0 10.1 160 70-313 4-164 (166)
99 3con_A GTPase NRAS; structural 99.8 4.7E-20 1.6E-24 154.4 11.3 164 68-317 20-186 (190)
100 3gee_A MNME, tRNA modification 99.8 2.1E-20 7.2E-25 177.9 10.1 165 67-313 231-397 (476)
101 2cxx_A Probable GTP-binding pr 99.8 1.7E-19 5.7E-24 150.6 14.4 171 70-316 2-186 (190)
102 2atv_A RERG, RAS-like estrogen 99.8 5.8E-20 2E-24 154.8 11.6 164 67-315 26-192 (196)
103 1ek0_A Protein (GTP-binding pr 99.8 4E-20 1.4E-24 151.3 10.1 164 69-312 3-167 (170)
104 2h57_A ADP-ribosylation factor 99.8 3.2E-20 1.1E-24 155.6 9.7 161 66-314 18-187 (190)
105 3ihw_A Centg3; RAS, centaurin, 99.8 2.1E-20 7.1E-25 156.3 8.5 162 66-315 17-181 (184)
106 1mky_A Probable GTP-binding pr 99.8 1.5E-19 5E-24 171.3 15.3 161 70-315 2-167 (439)
107 2f7s_A C25KG, RAS-related prot 99.8 7.7E-20 2.6E-24 156.5 12.2 174 67-315 23-200 (217)
108 2x77_A ADP-ribosylation factor 99.8 3.8E-20 1.3E-24 154.9 10.0 161 67-315 20-185 (189)
109 1z06_A RAS-related protein RAB 99.8 3E-20 1E-24 155.6 9.2 166 67-314 18-188 (189)
110 2b6h_A ADP-ribosylation factor 99.8 9.9E-20 3.4E-24 153.2 12.4 161 66-312 26-189 (192)
111 2g3y_A GTP-binding protein GEM 99.8 1.3E-20 4.6E-25 161.1 6.9 115 165-314 86-203 (211)
112 3cpj_B GTP-binding protein YPT 99.8 9.8E-20 3.4E-24 156.8 11.5 166 67-314 11-176 (223)
113 1wb1_A Translation elongation 99.8 2.8E-19 9.5E-24 171.0 15.6 116 165-313 72-188 (482)
114 2gf0_A GTP-binding protein DI- 99.8 3.9E-20 1.3E-24 155.8 8.6 161 67-313 6-170 (199)
115 3gj0_A GTP-binding nuclear pro 99.8 1.9E-20 6.4E-25 160.9 6.4 166 66-318 12-179 (221)
116 1m7b_A RND3/RHOE small GTP-bin 99.8 4.4E-20 1.5E-24 154.0 8.4 172 67-313 5-182 (184)
117 2erx_A GTP-binding protein DI- 99.8 3.7E-20 1.3E-24 151.8 7.8 160 69-313 3-166 (172)
118 1mky_A Probable GTP-binding pr 99.8 2.8E-19 9.5E-24 169.4 14.7 171 68-316 179-357 (439)
119 1gwn_A RHO-related GTP-binding 99.8 8E-20 2.7E-24 155.5 9.1 173 67-313 26-203 (205)
120 2yc2_C IFT27, small RAB-relate 99.8 1.1E-19 3.7E-24 154.0 9.8 167 67-315 18-193 (208)
121 2aka_B Dynamin-1; fusion prote 99.8 4E-19 1.4E-23 159.6 13.9 121 165-313 124-252 (299)
122 3th5_A RAS-related C3 botulinu 99.7 3.4E-21 1.2E-25 163.5 0.0 173 67-312 28-203 (204)
123 1lnz_A SPO0B-associated GTP-bi 99.8 1E-19 3.4E-24 166.3 9.7 170 70-317 159-333 (342)
124 3o47_A ADP-ribosylation factor 99.8 1.2E-19 4.3E-24 165.4 10.4 165 67-314 163-327 (329)
125 3geh_A MNME, tRNA modification 99.8 7.7E-20 2.6E-24 173.5 8.8 161 67-314 222-384 (462)
126 3izy_P Translation initiation 99.8 1.5E-20 5E-25 180.7 3.7 165 68-313 3-167 (537)
127 2e87_A Hypothetical protein PH 99.8 5.1E-18 1.7E-22 156.5 19.9 169 67-315 165-337 (357)
128 2cjw_A GTP-binding protein GEM 99.8 6.4E-20 2.2E-24 154.4 6.5 117 165-314 55-172 (192)
129 3j2k_7 ERF3, eukaryotic polype 99.8 6.6E-19 2.3E-23 166.6 14.2 112 165-306 94-217 (439)
130 1xzp_A Probable tRNA modificat 99.8 2.7E-19 9.3E-24 170.4 10.7 159 68-313 242-404 (482)
131 2hjg_A GTP-binding protein ENG 99.8 2.4E-19 8E-24 169.8 10.2 160 70-314 4-165 (436)
132 3p32_A Probable GTPase RV1496/ 99.8 2E-18 6.8E-23 159.1 15.2 199 67-314 77-284 (355)
133 2qtf_A Protein HFLX, GTP-bindi 99.8 4.7E-18 1.6E-22 156.7 16.7 176 71-319 181-359 (364)
134 1s0u_A EIF-2-gamma, translatio 99.8 1.5E-18 5E-23 162.9 12.8 114 166-313 81-197 (408)
135 2elf_A Protein translation elo 99.8 3.6E-18 1.2E-22 157.9 15.1 116 165-315 59-181 (370)
136 1kk1_A EIF2gamma; initiation o 99.8 1.9E-18 6.4E-23 162.3 13.4 115 166-313 83-199 (410)
137 1g7s_A Translation initiation 99.8 3.3E-18 1.1E-22 166.8 15.3 127 166-315 70-219 (594)
138 3p26_A Elongation factor 1 alp 99.8 4.3E-18 1.5E-22 163.0 15.8 112 165-303 110-227 (483)
139 2wkq_A NPH1-1, RAS-related C3 99.8 6.3E-19 2.2E-23 160.3 9.4 174 67-313 153-329 (332)
140 2zej_A Dardarin, leucine-rich 99.8 1.2E-18 4.1E-23 145.4 10.0 118 165-316 55-180 (184)
141 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-18 4.8E-23 167.2 11.7 166 67-316 320-486 (497)
142 2xtp_A GTPase IMAP family memb 99.8 7.7E-19 2.6E-23 154.8 8.6 183 67-316 20-210 (260)
143 3l0i_B RAS-related protein RAB 99.8 8.2E-21 2.8E-25 160.5 -4.0 165 67-313 31-195 (199)
144 4dcu_A GTP-binding protein ENG 99.8 7.8E-19 2.7E-23 167.1 9.0 160 69-313 23-184 (456)
145 3t5d_A Septin-7; GTP-binding p 99.8 2.9E-18 1E-22 152.4 12.1 87 198-313 116-203 (274)
146 3izq_1 HBS1P, elongation facto 99.8 1.9E-18 6.6E-23 169.3 11.5 110 165-304 244-362 (611)
147 2p67_A LAO/AO transport system 99.8 5E-18 1.7E-22 155.5 13.0 198 67-313 54-260 (341)
148 2www_A Methylmalonic aciduria 99.8 1.2E-17 4E-22 153.4 15.5 198 68-314 73-279 (349)
149 3mca_A HBS1, elongation factor 99.8 6.1E-19 2.1E-23 172.3 7.1 117 165-313 254-396 (592)
150 1d2e_A Elongation factor TU (E 99.8 4.5E-18 1.6E-22 159.0 12.6 117 165-313 65-194 (397)
151 3dpu_A RAB family protein; roc 99.8 1.7E-18 5.7E-23 168.0 9.9 175 67-319 39-213 (535)
152 3c5h_A Glucocorticoid receptor 99.8 1.2E-17 4.1E-22 146.9 14.4 88 198-313 163-254 (255)
153 1nrj_B SR-beta, signal recogni 99.8 9.2E-18 3.2E-22 143.6 13.3 120 67-248 10-137 (218)
154 3tr5_A RF-3, peptide chain rel 99.7 1.4E-17 4.9E-22 160.4 15.9 70 165-247 81-150 (528)
155 2c78_A Elongation factor TU-A; 99.7 6.5E-18 2.2E-22 158.4 13.2 117 165-313 74-211 (405)
156 3r7w_A Gtpase1, GTP-binding pr 99.7 5.4E-18 1.9E-22 153.1 12.0 169 68-312 2-179 (307)
157 1zo1_I IF2, translation initia 99.7 4.1E-19 1.4E-23 169.3 4.3 161 68-310 3-163 (501)
158 3qq5_A Small GTP-binding prote 99.7 7.5E-19 2.6E-23 164.7 5.7 164 67-314 32-196 (423)
159 2ywe_A GTP-binding protein LEP 99.7 2E-17 6.7E-22 161.0 14.1 112 166-314 73-184 (600)
160 1zun_B Sulfate adenylate trans 99.7 2.4E-17 8.3E-22 155.8 14.4 108 165-304 103-214 (434)
161 3cb4_D GTP-binding protein LEP 99.7 2E-17 6.9E-22 161.1 12.9 111 165-314 70-182 (599)
162 2wsm_A Hydrogenase expression/ 99.7 1E-17 3.4E-22 143.7 9.2 180 68-314 29-214 (221)
163 3lxw_A GTPase IMAP family memb 99.7 3.8E-17 1.3E-21 143.0 12.9 173 67-314 19-208 (247)
164 2x2e_A Dynamin-1; nitration, h 99.7 2.1E-17 7.2E-22 152.1 11.8 119 165-311 129-255 (353)
165 1jny_A EF-1-alpha, elongation 99.7 4.5E-17 1.5E-21 154.0 14.0 110 164-305 82-204 (435)
166 2f9l_A RAB11B, member RAS onco 99.7 3.4E-17 1.2E-21 138.2 11.4 163 69-315 5-169 (199)
167 1pui_A ENGB, probable GTP-bind 99.7 1.4E-16 4.9E-21 135.2 15.1 173 66-315 23-200 (210)
168 3lxx_A GTPase IMAP family memb 99.7 1.2E-16 4.1E-21 139.0 14.5 179 67-314 27-214 (239)
169 3r7w_B Gtpase2, GTP-binding pr 99.7 8.8E-17 3E-21 144.7 13.5 128 165-313 45-173 (331)
170 1f60_A Elongation factor EEF1A 99.7 4.4E-17 1.5E-21 154.9 11.7 110 165-304 84-202 (458)
171 1r5b_A Eukaryotic peptide chai 99.7 2E-17 6.8E-22 157.6 8.5 114 165-305 120-243 (467)
172 3avx_A Elongation factor TS, e 99.7 1.3E-16 4.5E-21 162.6 14.3 117 165-313 358-485 (1289)
173 1jwy_B Dynamin A GTPase domain 99.7 1.3E-16 4.5E-21 144.3 12.5 125 165-317 130-265 (315)
174 2j69_A Bacterial dynamin-like 99.7 5.9E-16 2E-20 154.0 18.1 121 166-314 174-325 (695)
175 2dy1_A Elongation factor G; tr 99.7 1.5E-16 5E-21 157.7 13.4 133 67-244 7-139 (665)
176 2h5e_A Peptide chain release f 99.7 3.4E-16 1.2E-20 150.9 14.8 70 165-247 81-150 (529)
177 1dar_A EF-G, elongation factor 99.7 3.1E-16 1.1E-20 155.9 14.2 70 165-247 76-145 (691)
178 1oix_A RAS-related protein RAB 99.7 1.3E-16 4.3E-21 134.0 9.6 161 68-312 28-190 (191)
179 4a9a_A Ribosome-interacting GT 99.7 2.2E-16 7.4E-21 145.4 11.5 225 32-312 29-298 (376)
180 1wxq_A GTP-binding protein; st 99.7 7.4E-18 2.5E-22 157.1 1.1 64 230-320 213-277 (397)
181 2xex_A Elongation factor G; GT 99.7 5.7E-16 2E-20 154.1 14.6 69 165-246 74-142 (693)
182 2qm8_A GTPase/ATPase; G protei 99.7 9E-16 3.1E-20 140.1 14.3 200 66-313 52-260 (337)
183 3j25_A Tetracycline resistance 99.7 1.7E-16 5.9E-21 156.5 10.1 135 163-314 64-239 (638)
184 1udx_A The GTP-binding protein 99.7 1.3E-15 4.4E-20 142.3 15.3 168 69-316 157-327 (416)
185 3zvr_A Dynamin-1; hydrolase, D 99.7 1.6E-16 5.4E-21 157.5 9.3 126 165-317 149-284 (772)
186 2rdo_7 EF-G, elongation factor 99.7 1.9E-15 6.6E-20 150.4 16.7 69 165-246 81-149 (704)
187 2ged_A SR-beta, signal recogni 99.6 1.9E-15 6.4E-20 126.5 13.5 132 67-256 46-181 (193)
188 2qag_A Septin-2, protein NEDD5 99.6 2.3E-16 7.7E-21 145.5 7.7 85 199-313 147-232 (361)
189 3vqt_A RF-3, peptide chain rel 99.6 1.7E-15 5.8E-20 146.7 14.0 72 163-247 97-168 (548)
190 2hf9_A Probable hydrogenase ni 99.6 4.7E-15 1.6E-19 127.4 12.4 183 68-314 37-224 (226)
191 2qnr_A Septin-2, protein NEDD5 99.6 8.4E-15 2.9E-19 131.7 13.9 86 199-314 128-214 (301)
192 2qag_C Septin-7; cell cycle, c 99.6 7.2E-15 2.5E-19 137.4 11.5 87 198-313 139-226 (418)
193 3t34_A Dynamin-related protein 99.6 1.9E-15 6.5E-20 139.4 7.4 80 165-247 135-219 (360)
194 3def_A T7I23.11 protein; chlor 99.6 1.9E-14 6.5E-19 126.9 12.5 127 68-246 35-166 (262)
195 1h65_A Chloroplast outer envel 99.5 6.6E-14 2.3E-18 123.9 13.1 128 68-247 38-170 (270)
196 4fn5_A EF-G 1, elongation fact 99.5 7.4E-14 2.5E-18 139.4 12.8 70 165-247 84-153 (709)
197 2qpt_A EH domain-containing pr 99.5 5.4E-13 1.8E-17 129.2 14.2 83 167-256 155-243 (550)
198 1jal_A YCHF protein; nucleotid 99.4 1.9E-12 6.5E-17 118.5 16.0 25 69-93 2-26 (363)
199 1tq4_A IIGP1, interferon-induc 99.4 2.3E-12 7.8E-17 120.1 15.1 180 68-320 68-259 (413)
200 2j37_W Signal recognition part 99.4 8.7E-13 3E-17 125.8 12.3 207 67-311 99-310 (504)
201 2dby_A GTP-binding protein; GD 99.4 3.3E-12 1.1E-16 117.4 14.5 24 70-93 2-25 (368)
202 1n0u_A EF-2, elongation factor 99.4 9E-13 3.1E-17 133.7 9.5 67 165-244 97-163 (842)
203 3dm5_A SRP54, signal recogniti 99.3 7.6E-11 2.6E-15 110.3 17.2 154 68-247 99-255 (443)
204 1zcb_A G alpha I/13; GTP-bindi 99.3 3.5E-11 1.2E-15 110.6 13.1 138 165-316 200-355 (362)
205 3kl4_A SRP54, signal recogniti 99.2 2E-10 6.9E-15 107.4 15.7 157 67-246 95-253 (433)
206 3sop_A Neuronal-specific septi 99.2 2.1E-10 7.3E-15 101.2 14.1 143 70-257 3-166 (270)
207 2v3c_C SRP54, signal recogniti 99.2 3.9E-11 1.3E-15 112.7 8.1 206 68-312 98-309 (432)
208 3h2y_A GTPase family protein; 99.2 3.3E-12 1.1E-16 117.8 -0.2 132 69-252 160-294 (368)
209 3e70_C DPA, signal recognition 99.1 1.4E-09 4.8E-14 98.5 17.1 154 67-245 127-282 (328)
210 3ec1_A YQEH GTPase; atnos1, at 99.1 2E-12 6.8E-17 119.4 -1.7 129 69-249 162-292 (369)
211 4fid_A G protein alpha subunit 99.1 1.4E-09 4.7E-14 98.6 16.7 28 287-314 301-328 (340)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.5E-10 8.7E-15 105.6 11.6 28 67-94 18-45 (392)
213 2ohf_A Protein OLA1, GTP-bindi 99.1 7.7E-11 2.6E-15 108.9 7.2 28 67-94 20-47 (396)
214 2qag_B Septin-6, protein NEDD5 99.1 4.6E-10 1.6E-14 104.6 10.6 52 200-257 151-202 (427)
215 1j8m_F SRP54, signal recogniti 99.1 2.8E-09 9.6E-14 95.3 15.4 155 69-246 98-254 (297)
216 3fvq_A Fe(3+) IONS import ATP- 98.9 2.1E-08 7.2E-13 91.5 14.4 108 66-175 27-166 (359)
217 1u0l_A Probable GTPase ENGC; p 98.9 7.5E-09 2.6E-13 92.8 10.9 101 167-309 64-168 (301)
218 3tui_C Methionine import ATP-b 98.9 2.2E-08 7.6E-13 91.5 13.9 108 66-175 51-191 (366)
219 1vma_A Cell division protein F 98.9 3.3E-08 1.1E-12 88.6 14.6 153 67-245 102-263 (306)
220 2yhs_A FTSY, cell division pro 98.9 9.3E-09 3.2E-13 97.2 11.4 153 66-244 290-451 (503)
221 3gfo_A Cobalt import ATP-bindi 98.9 1.1E-08 3.6E-13 90.5 10.9 108 66-175 31-171 (275)
222 1sgw_A Putative ABC transporte 98.9 1.2E-08 4E-13 86.8 10.7 106 67-175 33-161 (214)
223 4g1u_C Hemin import ATP-bindin 98.9 3.6E-08 1.2E-12 86.7 13.5 108 66-175 34-175 (266)
224 1vpl_A ABC transporter, ATP-bi 98.8 1.1E-08 3.8E-13 89.4 9.9 108 66-175 38-174 (256)
225 2onk_A Molybdate/tungstate ABC 98.8 2E-08 6.9E-13 86.9 11.2 106 67-175 23-154 (240)
226 2pcj_A ABC transporter, lipopr 98.8 6.8E-08 2.3E-12 82.7 14.3 107 67-175 28-168 (224)
227 3tif_A Uncharacterized ABC tra 98.8 5.8E-08 2E-12 83.8 13.8 109 66-175 28-173 (235)
228 2nq2_C Hypothetical ABC transp 98.8 7.3E-08 2.5E-12 84.1 14.4 107 67-175 29-156 (253)
229 3rlf_A Maltose/maltodextrin im 98.8 4.7E-08 1.6E-12 89.9 13.6 108 66-175 26-161 (381)
230 2olj_A Amino acid ABC transpor 98.8 7.9E-08 2.7E-12 84.3 14.5 108 66-175 47-187 (263)
231 1cip_A Protein (guanine nucleo 98.8 4.3E-09 1.5E-13 96.2 6.4 134 165-315 192-345 (353)
232 2ihy_A ABC transporter, ATP-bi 98.8 2.1E-08 7.2E-13 88.8 10.6 108 66-175 44-189 (279)
233 2pjz_A Hypothetical protein ST 98.8 1.3E-07 4.3E-12 83.0 14.8 106 66-175 28-156 (263)
234 1b0u_A Histidine permease; ABC 98.8 3.2E-08 1.1E-12 86.8 10.8 108 66-175 29-181 (262)
235 2xtz_A Guanine nucleotide-bind 98.8 1E-08 3.5E-13 93.8 7.8 30 288-317 319-348 (354)
236 3d31_A Sulfate/molybdate ABC t 98.8 1.1E-07 3.7E-12 86.7 14.6 108 66-175 23-155 (348)
237 1rj9_A FTSY, signal recognitio 98.8 1.6E-07 5.6E-12 84.0 15.4 40 68-107 101-140 (304)
238 1z47_A CYSA, putative ABC-tran 98.8 9.2E-08 3.2E-12 87.3 13.9 107 67-175 39-173 (355)
239 2it1_A 362AA long hypothetical 98.8 6.2E-08 2.1E-12 88.7 12.1 108 66-175 26-161 (362)
240 2yyz_A Sugar ABC transporter, 98.8 1.4E-07 4.8E-12 86.2 14.5 108 66-175 26-161 (359)
241 2xxa_A Signal recognition part 98.7 3.1E-07 1.1E-11 86.2 16.7 153 67-245 98-254 (433)
242 1oxx_K GLCV, glucose, ABC tran 98.7 8.8E-08 3E-12 87.5 12.7 108 66-175 28-168 (353)
243 2yz2_A Putative ABC transporte 98.7 2.1E-07 7.1E-12 81.8 14.4 108 66-175 30-166 (266)
244 1g6h_A High-affinity branched- 98.7 6.5E-08 2.2E-12 84.6 11.0 108 66-175 30-181 (257)
245 2pze_A Cystic fibrosis transme 98.7 3.2E-08 1.1E-12 85.1 8.9 109 67-175 32-158 (229)
246 2cbz_A Multidrug resistance-as 98.7 2.1E-08 7.1E-13 86.7 7.5 110 66-175 28-155 (237)
247 1zu4_A FTSY; GTPase, signal re 98.7 2.7E-07 9.4E-12 83.2 14.9 42 66-107 102-143 (320)
248 1g29_1 MALK, maltose transport 98.7 1.7E-07 5.7E-12 86.3 13.4 107 67-175 27-167 (372)
249 1ji0_A ABC transporter; ATP bi 98.7 4.9E-08 1.7E-12 84.5 9.4 107 67-175 30-167 (240)
250 2ffh_A Protein (FFH); SRP54, s 98.7 2.2E-07 7.5E-12 86.7 14.4 152 68-245 97-251 (425)
251 1v43_A Sugar-binding transport 98.7 1.6E-07 5.5E-12 86.2 13.2 108 66-175 34-169 (372)
252 3szr_A Interferon-induced GTP- 98.7 4.4E-08 1.5E-12 96.0 9.7 79 165-247 146-230 (608)
253 1azs_C GS-alpha; complex (lyas 98.7 3.7E-08 1.3E-12 91.2 8.5 29 288-316 359-387 (402)
254 2ixe_A Antigen peptide transpo 98.7 3E-07 1E-11 81.0 14.0 108 66-175 42-184 (271)
255 1ls1_A Signal recognition part 98.7 4.8E-07 1.6E-11 80.7 15.4 155 68-245 97-251 (295)
256 1mv5_A LMRA, multidrug resista 98.7 1.3E-07 4.6E-12 81.9 11.4 110 66-175 25-167 (243)
257 2qi9_C Vitamin B12 import ATP- 98.7 2.5E-07 8.5E-12 80.4 12.6 106 67-175 24-161 (249)
258 2ff7_A Alpha-hemolysin translo 98.7 1.3E-07 4.6E-12 82.1 10.8 110 66-175 32-173 (247)
259 2px0_A Flagellar biosynthesis 98.7 1.4E-07 4.8E-12 84.2 11.2 150 67-245 103-253 (296)
260 3ohm_A Guanine nucleotide-bind 98.6 4.9E-08 1.7E-12 88.1 7.2 137 165-315 166-319 (327)
261 2zu0_C Probable ATP-dependent 98.6 1.6E-07 5.6E-12 82.5 10.2 108 66-175 43-192 (267)
262 1puj_A YLQF, conserved hypothe 98.6 2.3E-07 7.8E-12 82.2 11.1 104 171-315 4-107 (282)
263 2yv5_A YJEQ protein; hydrolase 98.6 1.6E-07 5.5E-12 84.1 10.0 87 196-309 78-164 (302)
264 1nij_A Hypothetical protein YJ 98.6 1.7E-07 5.7E-12 84.6 10.0 155 69-246 4-165 (318)
265 3nh6_A ATP-binding cassette SU 98.6 2E-07 7E-12 83.4 9.8 110 66-175 77-218 (306)
266 2d2e_A SUFC protein; ABC-ATPas 98.6 2.1E-07 7.2E-12 81.0 9.5 107 67-175 27-171 (250)
267 3b9q_A Chloroplast SRP recepto 98.6 5.5E-07 1.9E-11 80.5 11.9 42 66-107 97-138 (302)
268 2bbs_A Cystic fibrosis transme 98.5 1.6E-07 5.5E-12 83.5 8.2 110 66-175 61-187 (290)
269 2og2_A Putative signal recogni 98.5 1E-06 3.5E-11 80.5 13.2 42 66-107 154-195 (359)
270 3ozx_A RNAse L inhibitor; ATP 98.5 5.1E-07 1.7E-11 87.1 11.5 107 67-175 292-413 (538)
271 1puj_A YLQF, conserved hypothe 98.5 1.2E-07 4.2E-12 83.9 6.3 28 67-94 118-145 (282)
272 3gd7_A Fusion complex of cysti 98.5 3E-07 1E-11 85.0 8.9 109 66-175 44-183 (390)
273 2ghi_A Transport protein; mult 98.5 2.3E-06 7.9E-11 74.8 13.1 109 66-175 43-183 (260)
274 3bk7_A ABC transporter ATP-bin 98.4 2E-06 6.7E-11 84.1 13.7 107 67-175 380-499 (607)
275 3ozx_A RNAse L inhibitor; ATP 98.4 9.7E-07 3.3E-11 85.1 10.3 108 66-175 22-166 (538)
276 3b5x_A Lipid A export ATP-bind 98.4 3.8E-06 1.3E-10 81.9 14.2 110 66-175 366-508 (582)
277 3b60_A Lipid A export ATP-bind 98.4 1.3E-06 4.6E-11 85.1 10.2 110 66-175 366-508 (582)
278 2yl4_A ATP-binding cassette SU 98.4 1.6E-06 5.4E-11 84.9 10.7 110 66-175 367-511 (595)
279 3j16_B RLI1P; ribosome recycli 98.4 5E-06 1.7E-10 81.2 14.0 104 69-175 378-495 (608)
280 4a82_A Cystic fibrosis transme 98.3 3.1E-06 1.1E-10 82.5 12.2 110 66-175 364-505 (578)
281 3qf4_A ABC transporter, ATP-bi 98.3 5.1E-06 1.7E-10 81.1 13.2 110 66-175 366-507 (587)
282 1yqt_A RNAse L inhibitor; ATP- 98.3 2.8E-06 9.7E-11 82.0 11.2 106 67-175 310-429 (538)
283 3cnl_A YLQF, putative uncharac 98.3 5.9E-07 2E-11 78.7 5.8 78 196-310 20-97 (262)
284 1yqt_A RNAse L inhibitor; ATP- 98.3 2.5E-06 8.7E-11 82.3 10.5 108 66-175 44-186 (538)
285 3cnl_A YLQF, putative uncharac 98.3 3E-07 1E-11 80.6 3.2 25 70-94 100-124 (262)
286 1f5n_A Interferon-induced guan 98.3 6.5E-07 2.2E-11 86.8 5.6 26 68-93 37-62 (592)
287 3j16_B RLI1P; ribosome recycli 98.3 5.7E-06 1.9E-10 80.8 11.9 108 66-175 100-249 (608)
288 4gp7_A Metallophosphoesterase; 98.3 1.1E-06 3.8E-11 71.7 5.9 24 67-90 7-30 (171)
289 3qf4_B Uncharacterized ABC tra 98.3 3.7E-06 1.3E-10 82.3 10.6 110 66-175 378-519 (598)
290 3h2y_A GTPase family protein; 98.2 2.8E-06 9.5E-11 78.1 8.8 87 198-312 70-158 (368)
291 4dzz_A Plasmid partitioning pr 98.2 6.8E-06 2.3E-10 68.6 10.6 137 71-244 3-143 (206)
292 3bk7_A ABC transporter ATP-bin 98.2 9.5E-06 3.2E-10 79.3 12.9 108 66-175 114-256 (607)
293 4f4c_A Multidrug resistance pr 98.2 1.1E-05 3.9E-10 85.6 13.7 137 66-206 1102-1273(1321)
294 3ec1_A YQEH GTPase; atnos1, at 98.2 4.5E-06 1.5E-10 76.8 8.3 87 198-312 72-160 (369)
295 1t9h_A YLOQ, probable GTPase E 98.1 2.6E-06 8.8E-11 76.2 6.0 82 196-307 85-170 (307)
296 1ye8_A Protein THEP1, hypothet 98.1 6.1E-06 2.1E-10 67.8 7.2 29 147-175 76-109 (178)
297 3g5u_A MCG1178, multidrug resi 98.0 1.5E-05 5.1E-10 84.5 10.0 110 66-175 413-554 (1284)
298 3end_A Light-independent proto 98.0 9.3E-05 3.2E-09 66.0 13.9 42 67-108 39-80 (307)
299 3kjh_A CO dehydrogenase/acetyl 98.0 5E-05 1.7E-09 65.2 11.7 38 71-108 2-39 (254)
300 4f4c_A Multidrug resistance pr 98.0 1.6E-05 5.4E-10 84.5 10.0 110 66-175 441-582 (1321)
301 2iw3_A Elongation factor 3A; a 98.0 4.4E-05 1.5E-09 77.9 12.3 108 67-175 459-576 (986)
302 2iw3_A Elongation factor 3A; a 98.0 1.1E-05 3.9E-10 82.2 7.3 51 125-175 879-929 (986)
303 3aez_A Pantothenate kinase; tr 97.9 1.4E-06 4.8E-11 78.2 -0.5 108 66-176 87-205 (312)
304 2npi_A Protein CLP1; CLP1-PCF1 97.9 4.7E-06 1.6E-10 78.7 3.1 104 67-175 136-269 (460)
305 2rcn_A Probable GTPase ENGC; Y 97.9 5.2E-05 1.8E-09 69.1 9.8 82 196-308 129-213 (358)
306 3bfv_A CAPA1, CAPB2, membrane 97.9 0.00016 5.4E-09 63.4 12.6 161 68-245 81-258 (271)
307 3g5u_A MCG1178, multidrug resi 97.8 3.6E-05 1.2E-09 81.5 9.2 110 66-175 1056-1199(1284)
308 3q9l_A Septum site-determining 97.8 0.00013 4.5E-09 63.0 11.2 39 70-108 3-42 (260)
309 3l82_B F-box only protein 4; T 97.8 2.6E-05 8.9E-10 65.2 6.2 91 198-313 126-222 (227)
310 3cio_A ETK, tyrosine-protein k 97.8 0.00015 5.2E-09 64.5 11.2 160 68-244 103-279 (299)
311 3cwq_A Para family chromosome 97.8 0.0003 1E-08 59.0 12.2 129 72-245 3-134 (209)
312 1t9h_A YLOQ, probable GTPase E 97.8 9.5E-06 3.2E-10 72.5 2.9 30 67-96 171-200 (307)
313 2pt7_A CAG-ALFA; ATPase, prote 97.8 3.6E-05 1.2E-09 69.6 6.5 37 68-104 170-206 (330)
314 3ea0_A ATPase, para family; al 97.7 0.00016 5.3E-09 62.0 10.2 41 68-108 3-45 (245)
315 3la6_A Tyrosine-protein kinase 97.7 0.00033 1.1E-08 61.9 12.4 160 68-246 91-269 (286)
316 2eyu_A Twitching motility prot 97.7 4.6E-05 1.6E-09 66.5 6.2 40 67-106 23-63 (261)
317 1u0l_A Probable GTPase ENGC; p 97.7 3.9E-05 1.3E-09 68.5 5.6 33 68-100 168-200 (301)
318 2yv5_A YJEQ protein; hydrolase 97.7 4.2E-05 1.5E-09 68.2 5.8 30 68-98 164-193 (302)
319 3q5d_A Atlastin-1; G protein, 97.7 6.9E-05 2.4E-09 70.2 7.4 25 68-92 66-90 (447)
320 2ph1_A Nucleotide-binding prot 97.7 0.00071 2.4E-08 58.7 13.3 41 69-109 18-59 (262)
321 2rcn_A Probable GTPase ENGC; Y 97.6 2.4E-05 8.3E-10 71.2 3.7 30 68-97 214-244 (358)
322 1wcv_1 SOJ, segregation protei 97.6 0.0003 1E-08 60.9 10.6 41 68-108 5-46 (257)
323 2oze_A ORF delta'; para, walke 97.6 0.00022 7.5E-09 63.1 9.6 40 70-109 35-77 (298)
324 4a74_A DNA repair and recombin 97.6 0.00014 4.9E-09 61.4 7.9 28 67-94 23-50 (231)
325 3ux8_A Excinuclease ABC, A sub 97.6 0.00021 7.1E-09 70.8 10.0 48 127-175 524-574 (670)
326 3jvv_A Twitching mobility prot 97.6 6.9E-05 2.4E-09 68.4 6.1 29 68-96 122-150 (356)
327 1htw_A HI0065; nucleotide-bind 97.6 2.9E-05 1E-09 62.4 3.2 33 67-100 31-63 (158)
328 3l2o_B F-box only protein 4; s 97.6 0.00012 4E-09 64.3 7.1 91 198-313 211-307 (312)
329 3k9g_A PF-32 protein; ssgcid, 97.6 0.00034 1.2E-08 60.9 10.0 41 67-108 25-66 (267)
330 3ux8_A Excinuclease ABC, A sub 97.6 0.00071 2.4E-08 67.0 13.4 45 130-175 186-232 (670)
331 2kjq_A DNAA-related protein; s 97.6 0.00035 1.2E-08 55.5 9.0 28 68-95 35-62 (149)
332 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.0017 5.7E-08 54.7 13.3 36 68-103 22-57 (235)
333 1znw_A Guanylate kinase, GMP k 97.5 6.4E-05 2.2E-09 63.0 3.6 29 66-94 17-45 (207)
334 1kgd_A CASK, peripheral plasma 97.4 7.6E-05 2.6E-09 61.1 3.6 26 68-93 4-29 (180)
335 3tr0_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 62.0 3.7 26 68-93 6-31 (205)
336 1hyq_A MIND, cell division inh 97.4 0.0016 5.6E-08 56.2 12.2 38 71-108 4-42 (263)
337 1lvg_A Guanylate kinase, GMP k 97.4 6.2E-05 2.1E-09 62.8 2.9 25 69-93 4-28 (198)
338 4a1f_A DNAB helicase, replicat 97.4 0.0024 8.1E-08 57.7 13.3 38 66-103 43-80 (338)
339 3c8u_A Fructokinase; YP_612366 97.4 9.1E-05 3.1E-09 62.1 3.4 29 67-95 20-48 (208)
340 3asz_A Uridine kinase; cytidin 97.4 9.8E-05 3.4E-09 61.8 3.5 28 67-94 4-31 (211)
341 1zp6_A Hypothetical protein AT 97.4 0.00011 3.6E-09 60.5 3.6 26 67-92 7-32 (191)
342 1cp2_A CP2, nitrogenase iron p 97.4 0.0018 6.1E-08 56.2 11.7 39 71-109 3-41 (269)
343 1s96_A Guanylate kinase, GMP k 97.4 0.00011 3.6E-09 62.5 3.6 28 67-94 14-41 (219)
344 1z6g_A Guanylate kinase; struc 97.4 9.1E-05 3.1E-09 62.7 3.2 27 67-93 21-47 (218)
345 1g3q_A MIND ATPase, cell divis 97.3 0.00061 2.1E-08 57.9 8.4 39 70-108 3-42 (237)
346 3a00_A Guanylate kinase, GMP k 97.3 9.8E-05 3.3E-09 60.8 3.0 25 70-94 2-26 (186)
347 3thx_B DNA mismatch repair pro 97.3 0.001 3.5E-08 67.7 10.8 87 67-177 671-764 (918)
348 3thx_A DNA mismatch repair pro 97.3 0.0016 5.4E-08 66.5 11.7 22 68-89 661-682 (934)
349 1np6_A Molybdopterin-guanine d 97.3 0.00019 6.5E-09 58.6 4.0 38 69-106 6-43 (174)
350 1sq5_A Pantothenate kinase; P- 97.2 0.00022 7.6E-09 63.7 4.7 37 67-103 78-116 (308)
351 2cvh_A DNA repair and recombin 97.2 0.0007 2.4E-08 56.7 7.6 25 67-91 18-42 (220)
352 3tau_A Guanylate kinase, GMP k 97.2 0.00017 6E-09 60.4 3.8 28 67-94 6-33 (208)
353 4aby_A DNA repair protein RECN 97.2 0.0011 3.9E-08 61.3 9.6 28 148-175 296-325 (415)
354 1xjc_A MOBB protein homolog; s 97.2 0.00021 7.2E-09 58.0 3.9 40 69-108 4-43 (169)
355 3ney_A 55 kDa erythrocyte memb 97.2 0.00019 6.5E-09 59.7 3.8 27 67-93 17-43 (197)
356 2xj4_A MIPZ; replication, cell 97.2 0.0011 3.7E-08 58.4 8.9 38 70-107 5-43 (286)
357 1nlf_A Regulatory protein REPA 97.2 0.00079 2.7E-08 59.0 7.9 27 67-93 28-54 (279)
358 3zq6_A Putative arsenical pump 97.2 0.083 2.8E-06 47.1 21.3 39 69-107 14-52 (324)
359 4eun_A Thermoresistant glucoki 97.2 0.0002 6.9E-09 59.5 3.6 27 67-93 27-53 (200)
360 2j41_A Guanylate kinase; GMP, 97.2 0.00022 7.6E-09 59.2 3.7 27 67-93 4-30 (207)
361 1rz3_A Hypothetical protein rb 97.2 0.00024 8.2E-09 59.2 3.8 40 67-106 20-59 (201)
362 1tf7_A KAIC; homohexamer, hexa 97.2 0.0034 1.2E-07 60.2 12.3 96 67-175 279-380 (525)
363 3b85_A Phosphate starvation-in 97.1 0.00018 6.2E-09 60.5 2.8 30 68-98 21-50 (208)
364 3tqc_A Pantothenate kinase; bi 97.1 0.00043 1.5E-08 62.1 4.7 41 66-106 89-131 (321)
365 1knq_A Gluconate kinase; ALFA/ 97.1 0.00036 1.2E-08 56.4 4.0 27 67-93 6-32 (175)
366 1p9r_A General secretion pathw 97.1 0.00043 1.5E-08 64.4 4.9 41 67-107 165-205 (418)
367 1kag_A SKI, shikimate kinase I 97.1 0.00028 9.7E-09 56.9 3.2 25 69-93 4-28 (173)
368 2v9p_A Replication protein E1; 97.1 0.00031 1.1E-08 62.5 3.7 28 66-93 123-150 (305)
369 2bdt_A BH3686; alpha-beta prot 97.0 0.00029 9.8E-09 57.9 3.1 22 70-91 3-24 (189)
370 3lnc_A Guanylate kinase, GMP k 97.0 0.0002 6.8E-09 61.0 2.1 28 66-93 24-52 (231)
371 2ehv_A Hypothetical protein PH 97.0 0.00042 1.4E-08 59.3 4.2 27 66-92 27-53 (251)
372 2jeo_A Uridine-cytidine kinase 97.0 0.00034 1.2E-08 60.2 3.7 27 67-93 23-49 (245)
373 2afh_E Nitrogenase iron protei 97.0 0.0067 2.3E-07 53.2 12.1 40 70-109 3-42 (289)
374 2gza_A Type IV secretion syste 97.0 0.00048 1.6E-08 63.0 4.7 36 68-103 174-209 (361)
375 1pzn_A RAD51, DNA repair and r 97.0 0.0018 6.2E-08 58.8 8.3 27 67-93 129-155 (349)
376 2i3b_A HCR-ntpase, human cance 97.0 0.00032 1.1E-08 58.0 3.0 25 70-94 2-26 (189)
377 3uie_A Adenylyl-sulfate kinase 97.0 0.00043 1.5E-08 57.5 3.7 28 67-94 23-50 (200)
378 2bbw_A Adenylate kinase 4, AK4 97.0 0.0004 1.4E-08 59.7 3.6 24 68-91 26-49 (246)
379 2obl_A ESCN; ATPase, hydrolase 97.0 0.00064 2.2E-08 61.7 5.1 40 66-105 68-107 (347)
380 3ug7_A Arsenical pump-driving 97.0 0.15 5.2E-06 46.0 20.7 41 68-108 25-65 (349)
381 2qor_A Guanylate kinase; phosp 96.9 0.00046 1.6E-08 57.5 3.2 26 68-93 11-36 (204)
382 3bh0_A DNAB-like replicative h 96.9 0.012 4.3E-07 52.4 12.7 37 66-102 65-101 (315)
383 2woj_A ATPase GET3; tail-ancho 96.9 0.02 6.9E-07 51.9 14.0 40 69-108 18-59 (354)
384 2yvu_A Probable adenylyl-sulfa 96.9 0.00062 2.1E-08 55.7 3.5 34 67-100 11-44 (186)
385 2f1r_A Molybdopterin-guanine d 96.9 0.00034 1.2E-08 56.9 1.9 28 70-97 3-30 (171)
386 2ewv_A Twitching motility prot 96.9 0.00064 2.2E-08 62.4 3.9 38 67-104 134-172 (372)
387 2vp4_A Deoxynucleoside kinase; 96.8 0.00073 2.5E-08 57.5 4.0 27 66-92 17-43 (230)
388 2woo_A ATPase GET3; tail-ancho 96.8 0.14 4.9E-06 45.7 19.3 39 70-108 20-58 (329)
389 3iqw_A Tail-anchored protein t 96.8 0.16 5.4E-06 45.6 19.3 40 69-108 16-55 (334)
390 3t61_A Gluconokinase; PSI-biol 96.8 0.00067 2.3E-08 56.3 3.4 26 68-93 17-42 (202)
391 2oap_1 GSPE-2, type II secreti 96.8 0.001 3.5E-08 63.6 5.0 37 68-104 259-295 (511)
392 1ly1_A Polynucleotide kinase; 96.8 0.00077 2.6E-08 54.5 3.6 23 69-91 2-24 (181)
393 2qt1_A Nicotinamide riboside k 96.8 0.00088 3E-08 55.8 4.0 28 66-93 18-45 (207)
394 3hr8_A Protein RECA; alpha and 96.8 0.014 4.8E-07 52.9 12.2 35 68-102 60-94 (356)
395 2dpy_A FLII, flagellum-specifi 96.8 0.0011 3.8E-08 62.1 5.0 40 66-105 154-193 (438)
396 3io3_A DEHA2D07832P; chaperone 96.8 0.093 3.2E-06 47.4 17.5 40 69-108 18-59 (348)
397 1cke_A CK, MSSA, protein (cyti 96.8 0.00085 2.9E-08 56.6 3.7 25 69-93 5-29 (227)
398 3vaa_A Shikimate kinase, SK; s 96.7 0.00091 3.1E-08 55.5 3.6 26 68-93 24-49 (199)
399 1ewq_A DNA mismatch repair pro 96.7 0.0031 1.1E-07 63.1 8.0 25 69-93 576-600 (765)
400 1bif_A 6-phosphofructo-2-kinas 96.7 0.0007 2.4E-08 64.1 3.2 28 67-94 37-64 (469)
401 3ec2_A DNA replication protein 96.7 0.0007 2.4E-08 55.1 2.7 26 69-94 38-63 (180)
402 3euj_A Chromosome partition pr 96.7 0.00063 2.2E-08 64.3 2.7 37 70-106 30-66 (483)
403 1ex7_A Guanylate kinase; subst 96.7 0.0008 2.7E-08 55.4 2.9 22 72-93 4-25 (186)
404 3kb2_A SPBC2 prophage-derived 96.7 0.00086 2.9E-08 53.8 3.1 22 71-92 3-24 (173)
405 1qhx_A CPT, protein (chloramph 96.7 0.0011 3.6E-08 53.7 3.6 25 69-93 3-27 (178)
406 1ihu_A Arsenical pump-driving 96.7 0.089 3E-06 51.0 17.9 40 68-107 7-46 (589)
407 1jjv_A Dephospho-COA kinase; P 96.7 0.001 3.5E-08 55.3 3.5 22 70-91 3-24 (206)
408 2o8b_B DNA mismatch repair pro 96.7 0.0031 1.1E-07 65.1 7.6 24 69-93 789-812 (1022)
409 3fkq_A NTRC-like two-domain pr 96.7 0.011 3.8E-07 54.0 10.7 41 66-106 140-181 (373)
410 2rhm_A Putative kinase; P-loop 96.6 0.0012 4E-08 54.1 3.7 25 68-92 4-28 (193)
411 3pg5_A Uncharacterized protein 96.6 0.0029 1E-07 57.7 6.7 38 71-108 3-41 (361)
412 4e22_A Cytidylate kinase; P-lo 96.6 0.0011 3.9E-08 57.2 3.7 25 67-91 25-49 (252)
413 2r6a_A DNAB helicase, replicat 96.6 0.036 1.2E-06 52.0 14.1 38 66-103 200-238 (454)
414 1cr0_A DNA primase/helicase; R 96.6 0.0013 4.5E-08 58.0 4.0 38 66-103 32-70 (296)
415 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 53.1 3.2 20 70-89 2-21 (179)
416 3cm0_A Adenylate kinase; ATP-b 96.6 0.001 3.5E-08 54.2 3.1 25 68-92 3-27 (186)
417 2if2_A Dephospho-COA kinase; a 96.6 0.0011 3.8E-08 55.0 3.2 22 70-91 2-23 (204)
418 1odf_A YGR205W, hypothetical 3 96.6 0.0013 4.4E-08 58.2 3.8 29 67-95 29-57 (290)
419 1byi_A Dethiobiotin synthase; 96.6 0.066 2.3E-06 44.6 14.4 33 71-103 3-36 (224)
420 1kht_A Adenylate kinase; phosp 96.6 0.0012 4.2E-08 53.8 3.5 25 69-93 3-27 (192)
421 2vf7_A UVRA2, excinuclease ABC 96.6 0.01 3.5E-07 59.9 10.6 49 126-175 710-761 (842)
422 1lw7_A Transcriptional regulat 96.6 0.0011 3.6E-08 60.7 3.2 28 69-96 170-197 (365)
423 3bgw_A DNAB-like replicative h 96.6 0.025 8.7E-07 52.9 12.6 37 67-103 195-231 (444)
424 1y63_A LMAJ004144AAA protein; 96.5 0.0016 5.6E-08 53.2 3.8 25 68-92 9-33 (184)
425 2r6f_A Excinuclease ABC subuni 96.5 0.02 6.8E-07 58.3 12.3 47 127-175 826-876 (972)
426 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 53.9 3.8 26 68-93 3-28 (204)
427 1wb9_A DNA mismatch repair pro 96.5 0.011 3.6E-07 59.6 10.3 26 67-92 605-630 (800)
428 3pih_A Uvrabc system protein A 96.5 0.026 8.9E-07 57.4 13.1 49 126-175 785-836 (916)
429 1nn5_A Similar to deoxythymidy 96.5 0.0017 5.7E-08 54.2 3.7 27 67-93 7-33 (215)
430 2pez_A Bifunctional 3'-phospho 96.5 0.0017 5.7E-08 52.7 3.6 26 68-93 4-29 (179)
431 2cdn_A Adenylate kinase; phosp 96.5 0.0018 6.3E-08 53.6 3.9 27 66-92 17-43 (201)
432 1qf9_A UMP/CMP kinase, protein 96.5 0.0019 6.6E-08 52.7 4.0 25 68-92 5-29 (194)
433 2plr_A DTMP kinase, probable t 96.5 0.0016 5.6E-08 54.0 3.6 27 69-95 4-30 (213)
434 1aky_A Adenylate kinase; ATP:A 96.5 0.0017 5.7E-08 54.7 3.6 26 68-93 3-28 (220)
435 2wwf_A Thymidilate kinase, put 96.5 0.0019 6.6E-08 53.7 4.0 26 68-93 9-34 (212)
436 2q6t_A DNAB replication FORK h 96.5 0.087 3E-06 49.2 15.7 28 67-94 198-225 (444)
437 2ygr_A Uvrabc system protein A 96.5 0.023 7.9E-07 58.0 12.3 47 127-175 844-894 (993)
438 1tev_A UMP-CMP kinase; ploop, 96.4 0.0017 5.8E-08 53.1 3.4 24 69-92 3-26 (196)
439 2c95_A Adenylate kinase 1; tra 96.4 0.0019 6.4E-08 53.0 3.6 25 68-92 8-32 (196)
440 1nks_A Adenylate kinase; therm 96.4 0.0021 7.2E-08 52.4 3.9 25 70-94 2-26 (194)
441 3iij_A Coilin-interacting nucl 96.4 0.0018 6.2E-08 52.5 3.5 25 68-92 10-34 (180)
442 3zvl_A Bifunctional polynucleo 96.4 0.023 8E-07 52.7 11.4 28 66-93 255-282 (416)
443 4eaq_A DTMP kinase, thymidylat 96.4 0.0033 1.1E-07 53.5 5.0 33 67-100 24-56 (229)
444 1gtv_A TMK, thymidylate kinase 96.4 0.0011 3.6E-08 55.4 1.8 31 71-101 2-32 (214)
445 3trf_A Shikimate kinase, SK; a 96.4 0.002 6.8E-08 52.4 3.5 24 69-92 5-28 (185)
446 2jaq_A Deoxyguanosine kinase; 96.4 0.0019 6.6E-08 53.2 3.3 23 71-93 2-24 (205)
447 1uf9_A TT1252 protein; P-loop, 96.4 0.0023 7.7E-08 52.8 3.7 26 67-92 6-31 (203)
448 3umf_A Adenylate kinase; rossm 96.4 0.0024 8.3E-08 53.9 3.9 28 66-93 26-53 (217)
449 3tlx_A Adenylate kinase 2; str 96.3 0.0021 7.3E-08 55.1 3.6 25 68-92 28-52 (243)
450 1ukz_A Uridylate kinase; trans 96.3 0.0028 9.6E-08 52.4 4.2 26 67-92 13-38 (203)
451 1zd8_A GTP:AMP phosphotransfer 96.3 0.0022 7.6E-08 54.2 3.4 25 68-92 6-30 (227)
452 1gvn_B Zeta; postsegregational 96.3 0.0022 7.6E-08 56.5 3.5 27 67-93 31-57 (287)
453 1zak_A Adenylate kinase; ATP:A 96.3 0.0021 7.3E-08 54.1 3.1 26 68-93 4-29 (222)
454 3kta_A Chromosome segregation 96.2 0.0026 8.8E-08 51.7 3.3 24 71-94 28-51 (182)
455 2bwj_A Adenylate kinase 5; pho 96.2 0.0026 8.9E-08 52.3 3.4 24 69-92 12-35 (199)
456 3ez9_A Para; DNA binding, wing 96.2 0.0067 2.3E-07 56.0 6.5 42 67-108 109-157 (403)
457 3fb4_A Adenylate kinase; psych 96.2 0.0024 8.4E-08 53.4 3.2 23 71-93 2-24 (216)
458 1vht_A Dephospho-COA kinase; s 96.2 0.003 1E-07 52.9 3.7 24 68-91 3-26 (218)
459 1uj2_A Uridine-cytidine kinase 96.2 0.003 1E-07 54.4 3.6 26 67-92 20-45 (252)
460 2x8a_A Nuclear valosin-contain 96.2 0.0024 8.2E-08 55.9 3.0 24 72-95 47-70 (274)
461 1m7g_A Adenylylsulfate kinase; 96.2 0.0032 1.1E-07 52.6 3.7 28 67-94 23-50 (211)
462 3dl0_A Adenylate kinase; phosp 96.2 0.0027 9.2E-08 53.1 3.2 22 71-92 2-23 (216)
463 2p5t_B PEZT; postsegregational 96.2 0.0026 8.8E-08 54.9 3.1 28 66-93 29-56 (253)
464 2vli_A Antibiotic resistance p 96.2 0.0021 7.2E-08 52.1 2.4 25 68-92 4-28 (183)
465 1n0w_A DNA repair protein RAD5 96.1 0.003 1E-07 53.6 3.3 26 67-92 22-47 (243)
466 2b8t_A Thymidine kinase; deoxy 96.1 0.023 7.8E-07 48.0 8.7 37 67-103 10-46 (223)
467 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0033 1.1E-07 54.5 3.6 25 68-92 3-27 (260)
468 2zr9_A Protein RECA, recombina 96.1 0.019 6.5E-07 52.0 8.8 35 68-102 60-94 (349)
469 2iyv_A Shikimate kinase, SK; t 96.1 0.0027 9.3E-08 51.6 2.9 23 70-92 3-25 (184)
470 3nwj_A ATSK2; P loop, shikimat 96.1 0.0029 1E-07 54.6 3.1 25 69-93 48-72 (250)
471 1qhl_A Protein (cell division 96.1 0.00044 1.5E-08 58.9 -2.1 33 70-102 28-60 (227)
472 1via_A Shikimate kinase; struc 96.1 0.0029 9.8E-08 51.1 2.8 23 71-93 6-28 (175)
473 3be4_A Adenylate kinase; malar 96.1 0.0033 1.1E-07 52.8 3.2 26 68-93 4-29 (217)
474 1ixz_A ATP-dependent metallopr 96.0 0.0032 1.1E-07 54.1 3.0 23 72-94 52-74 (254)
475 2z0h_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 51.2 3.3 23 71-93 2-24 (197)
476 1svm_A Large T antigen; AAA+ f 96.0 0.004 1.4E-07 57.1 3.7 26 67-92 167-192 (377)
477 3of5_A Dethiobiotin synthetase 96.0 0.13 4.5E-06 43.4 13.0 33 70-102 5-38 (228)
478 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0042 1.5E-07 49.0 3.4 24 69-92 23-46 (149)
479 3ez2_A Plasmid partition prote 96.0 0.024 8.4E-07 52.1 9.0 42 67-108 106-154 (398)
480 3r20_A Cytidylate kinase; stru 96.0 0.004 1.4E-07 53.1 3.3 25 68-92 8-32 (233)
481 3sr0_A Adenylate kinase; phosp 96.0 0.0039 1.3E-07 52.2 3.2 23 71-93 2-24 (206)
482 1e6c_A Shikimate kinase; phosp 96.0 0.004 1.4E-07 49.9 3.2 23 70-92 3-25 (173)
483 2pbr_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 50.8 3.3 23 71-93 2-24 (195)
484 1tf7_A KAIC; homohexamer, hexa 96.0 0.0046 1.6E-07 59.3 4.1 40 67-106 37-78 (525)
485 1in4_A RUVB, holliday junction 95.9 0.004 1.4E-07 56.0 3.3 24 70-93 52-75 (334)
486 2ze6_A Isopentenyl transferase 95.9 0.004 1.4E-07 53.8 3.2 23 71-93 3-25 (253)
487 3cr8_A Sulfate adenylyltranfer 95.9 0.0037 1.2E-07 60.2 3.1 32 66-97 366-397 (552)
488 2pt5_A Shikimate kinase, SK; a 95.9 0.0046 1.6E-07 49.3 3.3 22 71-92 2-23 (168)
489 1ak2_A Adenylate kinase isoenz 95.9 0.005 1.7E-07 52.3 3.6 27 67-93 14-40 (233)
490 2dr3_A UPF0273 protein PH0284; 95.9 0.005 1.7E-07 52.3 3.6 36 67-102 21-56 (247)
491 1e4v_A Adenylate kinase; trans 95.8 0.0048 1.7E-07 51.6 3.2 23 71-93 2-24 (214)
492 2f6r_A COA synthase, bifunctio 95.8 0.0056 1.9E-07 53.7 3.7 25 67-91 73-97 (281)
493 1iy2_A ATP-dependent metallopr 95.8 0.0045 1.6E-07 54.0 3.0 23 72-94 76-98 (278)
494 1v5w_A DMC1, meiotic recombina 95.8 0.17 5.7E-06 45.5 13.6 26 67-92 120-145 (343)
495 3qxc_A Dethiobiotin synthetase 95.8 0.55 1.9E-05 40.0 16.0 83 154-245 120-203 (242)
496 1q3t_A Cytidylate kinase; nucl 95.7 0.0064 2.2E-07 51.7 3.7 27 66-92 13-39 (236)
497 1q57_A DNA primase/helicase; d 95.7 0.17 5.9E-06 47.9 13.9 36 67-102 240-276 (503)
498 2xb4_A Adenylate kinase; ATP-b 95.7 0.0059 2E-07 51.5 3.3 23 71-93 2-24 (223)
499 2z4s_A Chromosomal replication 95.7 0.0083 2.9E-07 56.2 4.6 25 69-93 130-154 (440)
500 1a7j_A Phosphoribulokinase; tr 95.7 0.0033 1.1E-07 55.6 1.6 25 68-92 4-28 (290)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.6e-24 Score=196.09 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=120.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...+.+|+|+|.+|||||||+|+|++..+.. ++..+.++...+ .++..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------~s~~~~tT~~~~------------------~~~~~-- 54 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------ISPKAGTTRMRV------------------LGVKN-- 54 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCCCSCE------------------EEEEE--
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------cCCCCCceeeEE------------------EEEEe--
Confidence 3456789999999999999999999987653 233333331100 01111
Q ss_pred cccChHHHHHHHHHHHHhC-CCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
.. +.+++||||||++++..+...+..+...... ..+|++++|+|+..+....+.. .
T Consensus 55 -----------------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~----~ 113 (308)
T 3iev_A 55 -----------------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE----I 113 (308)
T ss_dssp -----------------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH----H
T ss_pred -----------------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH----H
Confidence 22 5689999999998764224444444443332 3479999999998876554421 0
Q ss_pred HHHHHhhcCCCeEEEeeccccC-ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC
Q 020549 223 ACSILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG 300 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g 300 (324)
.+..+...++|+++|+||+|+. +........+.+. ..+ ...+++++||++|.|
T Consensus 114 ~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~-------------------------~~~~~~~~i~~vSA~~g~g 168 (308)
T 3iev_A 114 YQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIH-------------------------KKHPELTEIVPISALKGAN 168 (308)
T ss_dssp HHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHH-------------------------HHCTTCCCEEECBTTTTBS
T ss_pred HHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHH-------------------------HhccCCCeEEEEeCCCCCC
Confidence 1244555789999999999998 5544333333332 112 457899999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 020549 301 IEAYFKAVEESAQEFMETYKY 321 (324)
Q Consensus 301 v~~l~~~i~~~~~~~~~~~~~ 321 (324)
+++|++.|.+.+++.++.|..
T Consensus 169 v~~L~~~l~~~l~~~~~~~~~ 189 (308)
T 3iev_A 169 LDELVKTILKYLPEGEPLFPE 189 (308)
T ss_dssp HHHHHHHHHHHSCBCCCSSCT
T ss_pred HHHHHHHHHHhCccCCCCCCc
Confidence 999999999999877766654
No 2
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.91 E-value=2.6e-23 Score=183.49 Aligned_cols=244 Identities=27% Similarity=0.414 Sum_probs=146.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+...++++|.+|||||||+++|..... .++.+.++..|+.....++....++++.....+++.. ++.++++++++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESY 88 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecH
Confidence 45678899999999999999999998877 7788999998887655544444444333334444433 445555554432
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
+.+.....+....+......++++||||||+.++......+..+...+ .. +++|+++|+.......+++........
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 111111122222222223357999999999987643333333333333 34 899999998776665555433222222
Q ss_pred HHhhcCCCeEEEeeccccCChHhHH---HHHHhHHHHHHHHhcCcc--chhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFAL---EWMQDFEVFQAAISSDHS--YTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.....++|+++|+||+|+....... ++++.+..+.+.+...+. .+..+ .+...+..+....+++++||++|.|
T Consensus 166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCccc
Confidence 3345679999999999998765332 222222222222211100 01111 2222233444446899999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQEFM 316 (324)
Q Consensus 301 v~~l~~~i~~~~~~~~ 316 (324)
+++|++.|.+.++.++
T Consensus 244 i~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 244 FEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999887654
No 3
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.90 E-value=9.3e-24 Score=181.35 Aligned_cols=165 Identities=17% Similarity=0.225 Sum_probs=98.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+|+|.+|||||||+++|+...|...+.+++. .........++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig-----~d~~~k~~~~~---------------------------- 58 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG-----IDFLSKTMYLE---------------------------- 58 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC---------------CEEEEEECS----------------------------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc-----eEEEEEEEEec----------------------------
Confidence 457999999999999999999999888765544331 10000000000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
...+.+.||||||++++.. ....+++.+.+.+++|.++...++.....|...+ ...
T Consensus 59 ---------------~~~v~l~iwDtaGqe~~~~------l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i---~~~ 114 (216)
T 4dkx_A 59 ---------------DRTIRLQLWDTAGLERFRS------LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV---RTE 114 (216)
T ss_dssp ---------------SCEEEEEEECCSCTTTCGG------GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH---HHH
T ss_pred ---------------ceEEEEEEEECCCchhhhh------HHHHHhccccEEEEEeecchhHHHHHHHHHHHHH---HHh
Confidence 2245788999999998722 1222333333334444444445555555554333 344
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+|||+||+|+.+...+. .++...++ ++ + ++++++|||++|.||+++|..
T Consensus 115 ~~~~~piilVgNK~Dl~~~r~V~--~~e~~~~a--------------~~-------~--~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 115 RGSDVIIMLVGNKTDLADKRQVS--IEEGERKA--------------KE-------L--NVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp HTTSSEEEEEEECTTCGGGCCSC--HHHHHHHH--------------HH-------H--TCEEEEEBTTTTBSHHHHHHH
T ss_pred cCCCCeEEEEeeccchHhcCccc--HHHHhhHH--------------HH-------h--CCeeEEEeCCCCcCHHHHHHH
Confidence 45689999999999987643210 01111111 11 1 467999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|++.+..
T Consensus 170 i~~~i~~ 176 (216)
T 4dkx_A 170 VAAALPG 176 (216)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9987753
No 4
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.5e-23 Score=188.84 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=113.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+|+|++|||||||+|+|++..+.. ++..+.++ ++.+ .+++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i------------vs~~~~tT----r~~i--------------~~i~~---- 51 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP------------ISPRPQTT----RKRL--------------RGILT---- 51 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE----
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee------------ecCCCCce----eEEE--------------EEEEE----
Confidence 34579999999999999999999987653 23333333 1100 01111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+.+++||||||++++ .......+...... ..+|+++||+|+.+++...+.|. +.
T Consensus 52 ---------------~~~~~l~l~DTpG~~~~--~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i-----~~ 109 (301)
T 1wf3_A 52 ---------------EGRRQIVFVDTPGLHKP--MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELV-----AR 109 (301)
T ss_dssp ---------------ETTEEEEEEECCCCCCC--CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHH-----HH
T ss_pred ---------------eCCcEEEEecCccccch--hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHH-----HH
Confidence 23568999999999875 33333333333322 35799999999988776554331 12
Q ss_pred HHhhc--CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 226 ILYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 226 ~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
.+... +.|+++|+||+|+...... ..+... .+..+.+++++||++|.|+++
T Consensus 110 ~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~-------------------------~~~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 110 ALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYH-------------------------ELLPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp HHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHH-------------------------HTSTTSEEEECCTTCHHHHHH
T ss_pred HHHhhcCCCCEEEEEECcccCCchHH--HHHHHH-------------------------HhcCcCcEEEEeCCCCCCHHH
Confidence 33444 7999999999999875430 111111 122346799999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 020549 304 YFKAVEESAQEFMETYK 320 (324)
Q Consensus 304 l~~~i~~~~~~~~~~~~ 320 (324)
|++.|.+.+++.++.|.
T Consensus 163 l~~~l~~~l~~~~~~y~ 179 (301)
T 1wf3_A 163 LKADLLALMPEGPFFYP 179 (301)
T ss_dssp HHHHHHTTCCBCCCSSC
T ss_pred HHHHHHHhcccCCCCCC
Confidence 99999998877666554
No 5
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.87 E-value=1.3e-21 Score=168.11 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=109.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|.+|||||||+|+|++..+.. .+...++++ .+.. ...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-----------~~~~~~~~t-~~~~--------------------~~~-- 72 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-----------FASKTPGRT-QHIN--------------------YFS-- 72 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-----------CTTCCCCSC-CCEE--------------------EEE--
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-----------eecCCCCcc-cceE--------------------EEE--
Confidence 456789999999999999999999875211 012222221 0000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh----hhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----ASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
+. ...+..+.||||||+.+..... .....+..++.. ..+|+++||+|+.+++.....
T Consensus 73 -~~------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~----- 134 (223)
T 4dhe_A 73 -VG------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDR----- 134 (223)
T ss_dssp -ES------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-----
T ss_pred -ec------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH-----
Confidence 00 0225789999999975531111 112223333433 335899999999887654432
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-----hccCceeeeccc
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-----YKNLKSVGVSSV 296 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~iv~vSA~ 296 (324)
..+..+...++|+++|+||+|+............+..... .+ ....+++++||+
T Consensus 135 ~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~---------------------~~~~~~~~~~~~~~~~SA~ 193 (223)
T 4dhe_A 135 RMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLD---------------------AYRDAGYAGKLTVQLFSAL 193 (223)
T ss_dssp HHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH---------------------HHHHHTCCSCEEEEEEBTT
T ss_pred HHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHH---------------------hhhhcccCCCCeEEEeecC
Confidence 1224455578999999999999987654333333221111 11 245789999999
Q ss_pred cCCChHHHHHHHHHHHHH
Q 020549 297 SGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 297 ~g~gv~~l~~~i~~~~~~ 314 (324)
+|.||++|++.|.+.++.
T Consensus 194 ~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 194 KRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TTBSHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHhcCc
Confidence 999999999999998864
No 6
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=6.6e-21 Score=159.77 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=105.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..... ....++.+ .+. ...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~t-~~~--------------------~~~--- 64 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------VSKTPGKT-RSI--------------------NFY--- 64 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------CCSSCCCC-CCE--------------------EEE---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------ccCCCCCc-cCe--------------------EEE---
Confidence 456789999999999999999999876332 11111111 000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
..+.++.||||||+..... ..........++.. ..+|++++|+|+..........
T Consensus 65 ----------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~---- 124 (195)
T 3pqc_A 65 ----------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM---- 124 (195)
T ss_dssp ----------------EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH----
T ss_pred ----------------EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH----
Confidence 1145789999999543210 00111122223333 2358999999987765443321
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
....+...+.|+++|+||+|+.+........+....+. ......+++++||++|.||
T Consensus 125 -~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 125 -MVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF----------------------SKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp -HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH----------------------HSSCCSCEEECCTTTCTTH
T ss_pred -HHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH----------------------hhcCCCceEEEecCCCCCH
Confidence 12344556899999999999987654433333333211 1123468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQE 314 (324)
Q Consensus 302 ~~l~~~i~~~~~~ 314 (324)
+++|+.|.+.+++
T Consensus 182 ~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 182 SELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987753
No 7
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=9.7e-22 Score=161.35 Aligned_cols=159 Identities=23% Similarity=0.279 Sum_probs=95.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+..+. ++..+ ++.. .+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~-------------~~~~t-~~~~-----------------~~~~~------ 46 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGN-------------WPGVT-VEKK-----------------EGEFE------ 46 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC------------------C-CCCC-----------------EEEEE------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccC-------------CCCcc-eeee-----------------EEEEE------
Confidence 67999999999999999999987553221 11111 0000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHH-HHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
..+..+.+|||||+.++.... ....+ ..+++...+|++++++|+.... ....| +..+.
T Consensus 47 -------------~~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~------~~~~~ 105 (165)
T 2wji_A 47 -------------YNGEKFKVVDLPGVYSLTANS-IDEIIARDYIINEKPDLVVNIVDATALE-RNLYL------TLQLM 105 (165)
T ss_dssp -------------ETTEEEEEEECCCCSCSSSSS-HHHHHHHHHHHHHCCSEEEEEEETTCHH-HHHHH------HHHHH
T ss_pred -------------ECCcEEEEEECCCcccCCCcc-hhHHHHHHHHhcCCCCEEEEEecCCchh-HhHHH------HHHHH
Confidence 124578999999998762211 11122 2233324579999999986521 11112 12333
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+....... .....+. + . . +.+++++||++|.|++++|+.|
T Consensus 106 ~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~--------------~-------~-~-~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 106 EMGANLLLALNKMDLAKSLGIE---IDVDKLE--------------K-------I-L-GVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HTTCCEEEEEECHHHHHHTTCC---CCHHHHH--------------H-------H-H-TSCEEECBGGGTBSHHHHHHHH
T ss_pred hcCCCEEEEEEchHhccccChh---hHHHHHH--------------H-------H-h-CCCEEEEEcCCCCCHHHHHHHH
Confidence 4589999999999986432110 0111111 1 1 1 3689999999999999999999
Q ss_pred HHHH
Q 020549 309 EESA 312 (324)
Q Consensus 309 ~~~~ 312 (324)
.+.+
T Consensus 160 ~~~~ 163 (165)
T 2wji_A 160 SIAV 163 (165)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 8
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=4.7e-22 Score=179.28 Aligned_cols=171 Identities=26% Similarity=0.288 Sum_probs=108.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+|+|++|||||||+|+|++..+.. ++..+.++ +.++ .|++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i------------~s~~~~tT----r~~~--------------~gi~~---- 52 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI------------TSRKAQTT----RHRI--------------VGIHT---- 52 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE------------CCCCSSCC----SSCE--------------EEEEE----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc------------cCCCCCcc----eeeE--------------EEEEE----
Confidence 34579999999999999999999875431 22222222 1100 02221
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCc-chhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
....++.||||||++ ++ +......+...... ..+|++++|+|+.. +...+.+ .+
T Consensus 53 ---------------~~~~~i~~iDTpG~~~~~--~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~ 109 (301)
T 1ega_A 53 ---------------EGAYQAIYVDTPGLHMEE--KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VL 109 (301)
T ss_dssp ---------------ETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HH
T ss_pred ---------------ECCeeEEEEECcCCCccc--hhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HH
Confidence 235678999999987 43 22222222221122 23699999999977 6655533 12
Q ss_pred HHHhhcCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
..+...+.|+++|+||+|+.. .....+....+. +.+...+++++||++|.|+++
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~-------------------------~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA-------------------------SQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHH-------------------------TTSCCSEEEECCTTTTTTHHH
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHH-------------------------HhcCcCceEEEECCCCCCHHH
Confidence 344556899999999999987 332222222111 112334799999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 020549 304 YFKAVEESAQEFMETYK 320 (324)
Q Consensus 304 l~~~i~~~~~~~~~~~~ 320 (324)
|++.|...+++.++.|.
T Consensus 165 l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 165 IAAIVRKHLPEATHHFP 181 (301)
T ss_dssp HHHHHHTTCCBCCCSSC
T ss_pred HHHHHHHhCCcCCCCCC
Confidence 99999988876655553
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=5.4e-21 Score=158.65 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=92.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|++|||||||+++|++..+...+.+++.. .+.. .+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~--------~~~~-----------------------~~~~--- 51 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD--------NFSA-----------------------NVVV--- 51 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------CBC-----------------------CCC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeee--------eEEE-----------------------EEEE---
Confidence 45688999999999999999999987665433222100 0000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chh-HHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~-~~~~~~~~ 223 (324)
......+.||||||+.++.. ... .. -..+|++++|+|...... ... .|...+
T Consensus 52 ---------------~~~~~~~~i~Dt~G~~~~~~--~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-- 106 (182)
T 3bwd_D 52 ---------------NGATVNLGLWDTAGQEDYNR--LRP----LS--YRGADVFILAFSLISKASYENVSKKWIPEL-- 106 (182)
T ss_dssp ---------------------CEEECCCC-CTTTT--TGG----GG--GTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred ---------------CCEEEEEEEEECCCChhhhh--hHH----hh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence 02245778999999887621 111 01 134689999999865321 111 232222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHH--------HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecc
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEW--------MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS 295 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA 295 (324)
... ..++|+++|+||+|+.+....... .++.. .++ ......+++++||
T Consensus 107 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~--------------~~~--------~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 107 -KHY-APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE--------------ELK--------KLIGAPAYIECSS 162 (182)
T ss_dssp -HHH-CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH--------------HHH--------HHHTCSEEEECCT
T ss_pred -HHh-CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH--------------HHH--------HHcCCCEEEEEEC
Confidence 221 137999999999999765422100 00011 111 1123348999999
Q ss_pred ccCCChHHHHHHHHHHH
Q 020549 296 VSGAGIEAYFKAVEESA 312 (324)
Q Consensus 296 ~~g~gv~~l~~~i~~~~ 312 (324)
++|.|++++|+.|.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVV 179 (182)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998865
No 10
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=2.1e-21 Score=163.56 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=100.2
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (324)
......+|+|+|.+|||||||+++|++..+.. .+.. +.. .....
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-------t~~-~~~~~--------------------------- 57 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-------TVG-YNVET--------------------------- 57 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-------CSS-EEEEE---------------------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-------ccc-eeEEE---------------------------
Confidence 34566889999999999999999999887654 2111 110 00000
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNML 221 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~ 221 (324)
+. .....+.||||||++++.. ... .. -..+|++++|+|...... ....|...+
T Consensus 58 ----~~-------------~~~~~~~i~Dt~G~~~~~~--~~~----~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~~ 112 (199)
T 4bas_A 58 ----FE-------------KGRVAFTVFDMGGAKKFRG--LWE----TY--YDNIDAVIFVVDSSDHLRLCVVKSEIQAM 112 (199)
T ss_dssp ----EE-------------ETTEEEEEEEECCSGGGGG--GGG----GG--CTTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred ----EE-------------eCCEEEEEEECCCCHhHHH--HHH----HH--HhcCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence 00 2356889999999987621 111 01 134699999999976432 121221111
Q ss_pred HHHHHHhh-------cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeec
Q 020549 222 YACSILYK-------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294 (324)
Q Consensus 222 ~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vS 294 (324)
+..... .++|+|+|+||+|+.......++.+.+. +.. + -.....++++||
T Consensus 113 --~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~-------------------~-~~~~~~~~~~~S 169 (199)
T 4bas_A 113 --LKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTT-------------------L-MGDHPFVIFASN 169 (199)
T ss_dssp --HTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHH-------------------H-HTTSCEEEEECB
T ss_pred --HhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chh-------------------h-ccCCeeEEEEee
Confidence 010001 2899999999999987633222222111 000 0 001346899999
Q ss_pred cccCCChHHHHHHHHHHHHHHH
Q 020549 295 SVSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 295 A~~g~gv~~l~~~i~~~~~~~~ 316 (324)
|++|.||+++|+.|.+.+....
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 11
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=6.2e-21 Score=169.31 Aligned_cols=160 Identities=21% Similarity=0.323 Sum_probs=100.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+|+|++.... +..+|+.+ ++.. .+.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------v~~~pg~t-v~~~-----------------~~~~~----- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------VGNWPGVT-VERK-----------------SGLVK----- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------CCSSSCCC-CSCE-----------------EEECT-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCCc-EEEE-----------------EEEEe-----
Confidence 468999999999999999999986432 22333222 1100 01000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
. +..+.||||||+.++............++....+|++++|+|++... . . +.....+.
T Consensus 47 --------------~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~-~---~~~~~~l~ 104 (272)
T 3b1v_A 47 --------------K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---R-N---LYLTTQLI 104 (272)
T ss_dssp --------------T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---H-H---HHHHHHHH
T ss_pred --------------c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---h-H---HHHHHHHH
Confidence 2 46899999999987632221122222334334689999999986521 1 1 11123344
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+....... .....+.+ . -+++++++||++|.|++++|+.|
T Consensus 105 ~~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~--------------~---------lg~~vi~~SA~~g~gi~el~~~i 158 (272)
T 3b1v_A 105 ETGIPVTIALNMIDVLDGQGKK---INVDKLSY--------------H---------LGVPVVATSALKQTGVDQVVKKA 158 (272)
T ss_dssp HTCSCEEEEEECHHHHHHTTCC---CCHHHHHH--------------H---------HTSCEEECBTTTTBSHHHHHHHH
T ss_pred hcCCCEEEEEEChhhCCcCCcH---HHHHHHHH--------------H---------cCCCEEEEEccCCCCHHHHHHHH
Confidence 4689999999999986432111 11121111 1 14789999999999999999999
Q ss_pred HHHH
Q 020549 309 EESA 312 (324)
Q Consensus 309 ~~~~ 312 (324)
.+.+
T Consensus 159 ~~~~ 162 (272)
T 3b1v_A 159 AHTT 162 (272)
T ss_dssp HHSC
T ss_pred HHHH
Confidence 8865
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=1.8e-20 Score=157.44 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=101.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+|+|++|||||||+|+|++..+.... ...++.+ .+. ...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~t-~~~--------------------~~~-- 65 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLART-----------SSKPGKT-QTL--------------------NFY-- 65 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CCE--------------------EEE--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCcccc-----------CCCCCce-eeE--------------------EEE--
Confidence 345788999999999999999999987543211 1111111 000 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh----hhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
..+.++.||||||+...... ..........+.. ..+|++++|+|+..+.......
T Consensus 66 -----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--- 125 (195)
T 1svi_A 66 -----------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ--- 125 (195)
T ss_dssp -----------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH---
T ss_pred -----------------EECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH---
Confidence 01347999999996443110 0111122223332 2348999999998766544321
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.+..+...+.|+++|+||+|+..........+.+. +.+ ......+++++||++|.|
T Consensus 126 --~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 126 --MYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVR---QTL-------------------NIDPEDELILFSSETKKG 181 (195)
T ss_dssp --HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHH---HHH-------------------TCCTTSEEEECCTTTCTT
T ss_pred --HHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHH---HHH-------------------cccCCCceEEEEccCCCC
Confidence 12334457899999999999998654433222222 111 011247899999999999
Q ss_pred hHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQ 313 (324)
Q Consensus 301 v~~l~~~i~~~~~ 313 (324)
++++++.|.+.++
T Consensus 182 v~~l~~~l~~~l~ 194 (195)
T 1svi_A 182 KDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 13
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.9e-21 Score=158.89 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=96.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..+|+++|.+|||||||+++|++..+. .. . ++.. .... .+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~---~----~t~~-~~~~------------------------~~~---- 56 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HT---S----PTIG-SNVE------------------------EIV---- 56 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EE---E----CCSC-SSCE------------------------EEE----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cC---c----CCCc-cceE------------------------EEE----
Confidence 35689999999999999999999976553 11 1 1110 0000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
..+..+.||||||++++.. .. ...+ ..+|++++|+|+..... ....|...+ .
T Consensus 57 ----------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~--~ 110 (187)
T 1zj6_A 57 ----------------INNTRFLMWDIGGQESLRS--SW----NTYY--TNTEFVIVVVDSTDRERISVTREELYKM--L 110 (187)
T ss_dssp ----------------ETTEEEEEEECCC----CG--GG----HHHH--TTCCEEEEEEETTCTTTHHHHHHHHHHH--H
T ss_pred ----------------ECCEEEEEEECCCCHhHHH--HH----HHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHH--H
Confidence 1246789999999877521 11 1112 34699999999876532 222221111 0
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~ 303 (324)
......+.|+++|+||+|+.......+..+.+. .. .+ ....+++++||++|.|+++
T Consensus 111 ~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 111 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LT--SIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp TSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GG--GCCSSCEEEEECBTTTTBTHHH
T ss_pred hchhhCCCeEEEEEECCCCcCCCCHHHHHHHhC---------------------hh--hhcCCCcEEEEccCCCCcCHHH
Confidence 111125799999999999976422111111110 00 00 1235899999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 020549 304 YFKAVEESAQEFMETYK 320 (324)
Q Consensus 304 l~~~i~~~~~~~~~~~~ 320 (324)
+++.|.+.+...+..+.
T Consensus 168 l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 168 GLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp HHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 99999998866555443
No 14
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=6.5e-21 Score=157.46 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|++|||||||+++|++..+......++ . ..+.. . .+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~-~~~~~----~------------------~~~~~--- 52 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-------G-VEFLN----K------------------DLEVD--- 52 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC-------S-EEEEE----E------------------EEEET---
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-------e-eeEEE----E------------------EEEEC---
Confidence 45789999999999999999999876653221110 0 00000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. ..... ...+|++++|+|...... ....|...+ .
T Consensus 53 ---------------~~~~~~~i~Dt~G~~~~~~------~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~ 106 (177)
T 1wms_A 53 ---------------GHFVTMQIWDTAGQERFRS------LRTPF--YRGSDCCLLTFSVDDSQSFQNLSNWKKEF---I 106 (177)
T ss_dssp ---------------TEEEEEEEEECCCCGGGHH------HHGGG--GTTCSEEEEEEETTCHHHHHTHHHHHHHH---H
T ss_pred ---------------CEEEEEEEEeCCCchhhhh------hHHHH--HhcCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence 1135789999999877521 11111 134689999999865431 222332222 2
Q ss_pred HHhh----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 226 ILYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 226 ~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
.... .+.|+++|+||+|+.......+....+ . ......+++++||++|.|+
T Consensus 107 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~----------------------~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 107 YYADVKEPESFPFVILGNKIDISERQVSTEEAQAW---C----------------------RDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp HHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH---H----------------------HHTTCCCEEECCTTTCTTH
T ss_pred HHccccccCCCcEEEEEECCcccccccCHHHHHHH---H----------------------HhcCCceEEEEeCCCCCCH
Confidence 2222 678999999999997432111111111 1 1123578999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQE 314 (324)
Q Consensus 302 ~~l~~~i~~~~~~ 314 (324)
+++|+.|.+.+..
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 15
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.85 E-value=1.5e-21 Score=161.52 Aligned_cols=169 Identities=18% Similarity=0.267 Sum_probs=102.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+++|++|||||||+++|++..+...... +. +..+. ...+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-------~~-----~~~~~-------------------~~~~~-- 51 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAG-------GI-----TQHIG-------------------AYQVT-- 51 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCC-------SS-----STTCC-------------------CCEEE--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCC-------ce-----eEeee-------------------EEEEE--
Confidence 34678899999999999999999998766532210 00 00000 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+..+.||||||+.++..... .....+|++++|+|+........ +..+.
T Consensus 52 -----------------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~~~~~-----~~~l~ 101 (178)
T 2lkc_A 52 -----------------VNDKKITFLDTPGHEAFTTMRA--------RGAQVTDIVILVVAADDGVMPQT-----VEAIN 101 (178)
T ss_dssp -----------------ETTEEEEESCCCSSSSSSCSCC--------SSCCCCCEEEEEEETTCCCCHHH-----HHHHH
T ss_pred -----------------eCCceEEEEECCCCHHHHHHHH--------HHHhhCCEEEEEEECCCCCcHHH-----HHHHH
Confidence 1245788999999887622110 00134689999999877544332 22224
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.+...++|+++|+||+|+..... .+....+. .. ..+.. .+....+++++||++|.|+++++
T Consensus 102 ~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~----~~-------~~~~~-------~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 102 HAKAANVPIIVAINKMDKPEANP-DRVMQELM----EY-------NLVPE-------EWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp HHGGGSCCEEEEEETTTSSCSCH-HHHHHHHT----TT-------TCCBT-------TTTSSEEEEECCSSSSHHHHHHH
T ss_pred HHHhCCCCEEEEEECccCCcCCH-HHHHHHHH----hc-------CcChh-------HcCCcccEEEEecCCCCCHHHHH
Confidence 45557899999999999986421 01111110 00 00000 11112589999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 306 KAVEESAQEFM 316 (324)
Q Consensus 306 ~~i~~~~~~~~ 316 (324)
+.|.+.+....
T Consensus 163 ~~l~~~~~~~~ 173 (178)
T 2lkc_A 163 EMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHhhhhhc
Confidence 99998876543
No 16
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=1.7e-21 Score=159.18 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=96.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|++..+...+.++ .. ..+... +...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-------~~-~~~~~~-----------------------~~~~---- 47 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-------IE-DSYRKQ-----------------------VEVD---- 47 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC-------SE-EEEEEE-----------------------EESS----
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-------cc-ceEEEE-----------------------EEEC----
Confidence 468999999999999999999987654322111 00 000000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+. .+|++++|+|..... .....|...+ ...
T Consensus 48 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~~ 103 (167)
T 1c1y_A 48 --------------CQQCMLEILDTAGTEQFTA------MRDLYMK--NGQGFALVYSITAQSTFNDLQDLREQI--LRV 103 (167)
T ss_dssp --------------SCEEEEEEEEECSSCSSTT------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHH--HHH
T ss_pred --------------CEEEEEEEEECCChHHHHH------HHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHH--HHh
Confidence 1245688999999887621 1111222 258888998876532 2222232211 112
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+.+..... .+....+. ......+++++||++|.|++++++
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 104 KDTEDVPMILVGNKCDLEDERVVG--KEQGQNLA----------------------RQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp HCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHTTSCEEEECBTTTTBSHHHHHH
T ss_pred hCcCCCcEEEEEECccccccccCC--HHHHHHHH----------------------HHccCCcEEEecCCCCCCHHHHHH
Confidence 223579999999999997543210 01111111 112357899999999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.|.+.+
T Consensus 160 ~l~~~i 165 (167)
T 1c1y_A 160 DLVRQI 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 17
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=1.3e-21 Score=163.21 Aligned_cols=167 Identities=15% Similarity=0.212 Sum_probs=98.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|++|||||||+++|++..+...+.. +. ...+... ....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~--- 48 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDP-------TI-EDSYRKQ-----------------------VVID--- 48 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT-------TC-CEEEEEE-----------------------EEET---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------Cc-hheEEEE-----------------------EEEC---
Confidence 357899999999999999999998765432110 00 0000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. .. ...+. .+|++++|+|..... .....|...+ ..
T Consensus 49 ---------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~ 103 (189)
T 4dsu_A 49 ---------------GETCLLDILDTAGQEEYSA--MR----DQYMR--TGEGFLCVFAINNTKSFEDIHHYREQI--KR 103 (189)
T ss_dssp ---------------TEEEEEEEEECCCC---CT--TH----HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred ---------------CcEEEEEEEECCCcHHHHH--HH----HHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHH--HH
Confidence 1234578999999887521 11 11122 257888888886532 1122222211 12
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....+.|+++|+||+|+.......+....+. . . .+.+++++||++|.|++++|
T Consensus 104 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~---------------------~--~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 104 VKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---R---------------------S--YGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp HTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH---H---------------------H--HTCCEEECCTTTCTTHHHHH
T ss_pred hcCCCCCcEEEEEECccCcccccCHHHHHHHH---H---------------------H--cCCeEEEEeCCCCCCHHHHH
Confidence 22335799999999999985432222221111 1 1 14689999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020549 306 KAVEESAQEFMETY 319 (324)
Q Consensus 306 ~~i~~~~~~~~~~~ 319 (324)
..|.+.+......+
T Consensus 158 ~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 158 YTLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhc
Confidence 99999987655443
No 18
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=1e-20 Score=154.92 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=96.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|++|||||||+++|++..+......++. .. +. ... +...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~-----~~-~~-~~~-----------------------~~~~---- 48 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG-----ID-FK-IKT-----------------------VDIN---- 48 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC------------CC-EE-EEE-----------------------EESS----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc-----ee-EE-EEE-----------------------EEEC----
Confidence 46899999999999999999998866533221110 00 00 000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. ... ..+ ..+|++++|+|...... ....| +..+..
T Consensus 49 --------------~~~~~~~l~D~~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~ 103 (170)
T 1g16_A 49 --------------GKKVKLQIWDTAGQERFRT--ITT----AYY--RGAMGIILVYDITDERTFTNIKQW---FKTVNE 103 (170)
T ss_dssp --------------SCEEEEEEECCTTGGGTSC--CCH----HHH--TTEEEEEEEEETTCHHHHHTHHHH---HHHHHH
T ss_pred --------------CEEEEEEEEeCCCChhhhh--hHH----HHh--ccCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence 1134788999999877521 111 111 24589999999865321 11223 222223
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+.......+. ...+.+ . .+.+++++||++|.|+++++.
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 104 HANDEAQLLLVGNKSDMETRVVTADQ---GEALAK---------------------E--LGIPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp HSCTTCEEEEEEECTTCTTCCSCHHH---HHHHHH---------------------H--HTCCEEECBTTTTBSHHHHHH
T ss_pred hcCCCCcEEEEEECccCCcCccCHHH---HHHHHH---------------------H--cCCeEEEEECCCCCCHHHHHH
Confidence 33357999999999999543211111 111111 1 136899999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
.|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (170)
T 1g16_A 158 TLAKLIQE 165 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 19
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=1.7e-21 Score=158.92 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=95.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|++..+...+.+ +... .+...+ ...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~-~~~~~~-----------------------~~~---- 47 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP-------TIED-FYRKEI-----------------------EVD---- 47 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-------TCCE-EEEEEE-----------------------EET----
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCC-------Ccce-eEEEEE-----------------------EEC----
Confidence 46899999999999999999998765432110 0000 000000 000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+. .+|.+++++|..... .....|...+ ...
T Consensus 48 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--~~~ 103 (167)
T 1kao_A 48 --------------SSPSVLEILDTAGTEQFAS------MRDLYIK--NGQGFILVYSLVNQQSFQDIKPMRDQI--IRV 103 (167)
T ss_dssp --------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HHH
T ss_pred --------------CEEEEEEEEECCCchhhHH------HHHHHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHH--HHh
Confidence 1234588999999877521 1111222 248999999987532 1122221111 122
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+.+..... ......+.+ . .+.+++++||++|.|++++++
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 104 KRYEKVPVILVGNKVDLESEREVS--SSEGRALAE---------------------E--WGCPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp TTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTSCEEEECTTCHHHHHHHHH
T ss_pred cCCCCCCEEEEEECCcccccccCC--HHHHHHHHH---------------------H--hCCCEEEecCCCCcCHHHHHH
Confidence 233579999999999987543210 011111111 1 146899999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.|.+.+.
T Consensus 159 ~l~~~~~ 165 (167)
T 1kao_A 159 EIVRQMN 165 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=3.4e-21 Score=157.98 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=96.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|++|||||||+++|++..+.....++ .........+ ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-------~~~~~~~~~~-----------------------~~~--- 51 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT-------LGASFLTKKL-----------------------NIG--- 51 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCC-------CSCEEEEEEE-----------------------ESS---
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCc-------cceEEEEEEE-----------------------EEC---
Confidence 4578999999999999999999987654322110 1000000000 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++..... ..-..+|++++|+|....... ......+..+...
T Consensus 52 ---------------~~~~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~ 107 (170)
T 1z08_A 52 ---------------GKRVNLAIWDTAGQERFHALGP--------IYYRDSNGAILVYDITDEDSF-QKVKNWVKELRKM 107 (170)
T ss_dssp ---------------SCEEEEEEEECCCC-------C--------CSSTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred ---------------CEEEEEEEEECCCcHhhhhhHH--------HHhccCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence 1234788999999876521000 001346899999998653211 1111122222333
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+.+..... .+....+.+ . .+.+++++||++|.|++++|+.
T Consensus 108 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 108 LGNEICLCIVGNKIDLEKERHVS--IQEAESYAE---------------------S--VGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp HGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEEEBTTTTBSHHHHHHH
T ss_pred cCCCCeEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCeEEEecCCCCCCHHHHHHH
Confidence 34679999999999997642210 011111111 1 1468999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9987753
No 21
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=8e-21 Score=161.15 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...+..+ ......... +...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~~~~~~~~~-----------------------~~~~-- 53 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT-------IGADFLTKE-----------------------VMVD-- 53 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC-------CSEEEEEEE-----------------------EESS--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------ccceEEEEE-----------------------EEEC--
Confidence 35688999999999999999999988765322111 000000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. .... . -..+|++++|+|+.... .....|...+
T Consensus 54 ----------------~~~~~~~l~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~--- 106 (207)
T 1vg8_A 54 ----------------DRLVTMQIWDTAGQERFQS--LGVA----F--YRGADCCVLVFDVTAPNTFKTLDSWRDEF--- 106 (207)
T ss_dssp ----------------SCEEEEEEEEECSSGGGSC--SCCG----G--GTTCSEEEEEEETTCHHHHHTHHHHHHHH---
T ss_pred ----------------CEEEEEEEEeCCCcHHHHH--hHHH----H--HhCCcEEEEEEECCCHHHHHHHHHHHHHH---
Confidence 1235789999999877521 1100 0 13468999999986542 1222332222
Q ss_pred HHHh----hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 225 SILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 225 ~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.... ..++|+++|+||+|+.......+....+. ......+++++||++|.|
T Consensus 107 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 107 LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC-------------------------YSKNNIPYFETSAKEAIN 161 (207)
T ss_dssp HHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH-------------------------HHTTSCCEEECBTTTTBS
T ss_pred HHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHH-------------------------HhcCCceEEEEeCCCCCC
Confidence 2222 14789999999999984322111111111 112357899999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQEFM 316 (324)
Q Consensus 301 v~~l~~~i~~~~~~~~ 316 (324)
++++|+.|.+.+....
T Consensus 162 i~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 162 VEQAFQTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999886543
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6.3e-21 Score=161.91 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=100.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+......+ +. ..+.. . .+...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t-------~~-~~~~~----~------------------~~~~~-- 71 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT-------IG-VDFMI----K------------------TVEIN-- 71 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC-------CS-EEEEE----E------------------EEEET--
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc-------cc-eeEEE----E------------------EEEEC--
Confidence 34578999999999999999999988665322111 00 00000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. ..... -..+|++++|+|...... ....| +..+
T Consensus 72 ----------------~~~~~l~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~D~~~~~s~~~~~~~---~~~i 124 (201)
T 2ew1_A 72 ----------------GEKVKLQIWDTAGQERFRS------ITQSY--YRSANALILTYDITCEESFRCLPEW---LREI 124 (201)
T ss_dssp ----------------TEEEEEEEEEECCSGGGHH------HHGGG--STTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred ----------------CEEEEEEEEECCCcHHHHH------HHHHH--HhcCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence 1135789999999876511 11111 134699999999865321 12233 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......+.|+++|+||+|+.+..... .+....+. . ..+.+++++||++|.||+++
T Consensus 125 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 125 EQYASNKVITVLVGNKIDLAERREVS--QQRAEEFS----------------------E-AQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp HHHSCTTCEEEEEEECGGGGGGCSSC--HHHHHHHH----------------------H-HHTCCEEECCTTTCTTHHHH
T ss_pred HHhcCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence 33334578999999999997542210 01111111 1 12468999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|..|.+.+...
T Consensus 180 ~~~l~~~i~~~ 190 (201)
T 2ew1_A 180 FLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888653
No 23
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=5e-21 Score=159.30 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=99.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||+++|++..+...+.++ ... .+...+ ...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t-------~~~-~~~~~~-----------------------~~~--- 49 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------VFD-NYSANV-----------------------MVD--- 49 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC-------SCC-EEEEEE-----------------------EET---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-------ccc-eeEEEE-----------------------EEC---
Confidence 3478999999999999999999987664322111 100 000000 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chh-HHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~-~~~~~~~~~ 224 (324)
.....+.||||||++++.. .... .-..+|++++|+|...... ... .|...+
T Consensus 50 ---------------~~~~~~~i~Dt~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--- 103 (186)
T 1mh1_A 50 ---------------GKPVNLGLWDTAGQEDYDR--LRPL------SYPQTDVSLICFSLVSPASFENVRAKWYPEV--- 103 (186)
T ss_dssp ---------------TEEEEEEEECCCCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred ---------------CEEEEEEEEECCCCHhHHH--HHHH------hccCCcEEEEEEECCChhhHHHHHHHHHHHH---
Confidence 1245678999999977521 1100 1134699999999865321 111 232211
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
... ..+.|+++|+||+|+.......+...... .. .+.......+.......+++++||++|.|++++
T Consensus 104 ~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 104 RHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKK-------LT-----PITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170 (186)
T ss_dssp HHH-STTSCEEEEEECHHHHTCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred HHh-CCCCCEEEEeEcccccccchhhhhhcccc-------cc-----cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHH
Confidence 211 13799999999999976543221111100 00 000000000111122248999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|+.|.+.+.+.
T Consensus 171 ~~~l~~~~~~~ 181 (186)
T 1mh1_A 171 FDEAIRAVLCP 181 (186)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHhcc
Confidence 99999987543
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.7e-21 Score=159.36 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|++|||||||+++|++..+..... .++. ..+... ... .
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~------~~t~-------~~~~~~-----------------~~~-~-- 54 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF------ISTV-------GIDFRN-----------------KVL-D-- 54 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC------CCCC-------SCEEEE-----------------EEE-E--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc------CCce-------eeEEEE-----------------EEE-E--
Confidence 456889999999999999999999886642110 0000 000000 000 0
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
+ ......+.||||||+.++.. .....+ ..+|++++|+|...... ....| +..+
T Consensus 55 -~-------------~~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~~~i 109 (180)
T 2g6b_A 55 -V-------------DGVKVKLQMWDTAGQERFRS------VTHAYY--RDAHALLLLYDVTNKASFDNIQAW---LTEI 109 (180)
T ss_dssp -E-------------TTEEEEEEEEECCCC--------------CCG--GGCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred -E-------------CCEEEEEEEEeCCCcHHHHH------HHHHHc--cCCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence 0 01234788999999876521 011111 23689999999876321 11223 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++|+||+|+....... .+....+.+ . .+.+++++||++|.|++++
T Consensus 110 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 110 HEYAQHDVALMLLGNKVDSAHERVVK--REDGEKLAK---------------------E--YGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp HHHSCTTCEEEEEEECCSTTSCCCSC--HHHHHHHHH---------------------H--HTCCEEECCTTTCTTHHHH
T ss_pred HHhCCCCCcEEEEEECcccCcccccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHH
Confidence 33333679999999999998643210 001111111 1 1468999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
++.|.+.+...
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=162.14 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=96.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+|+|.+|||||||+++|++..+...... +.. .+..... +...
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-------t~~-----~~~~~~~------------------~~~~- 71 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKS-------TVG-----VDFKIKT------------------VELR- 71 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------C-------CTT-----EEEEEEE------------------EEET-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCC-------ccc-----eeEEEEE------------------EEEC-
Confidence 44567899999999999999999998765432110 000 0000000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~ 223 (324)
.....+.||||||+.++.. .....++ .+|++++|+|...... ....| +..
T Consensus 72 -----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~~--~~d~iilV~D~~~~~s~~~~~~~---~~~ 123 (192)
T 2il1_A 72 -----------------GKKIRLQIWDTAGQERFNS------ITSAYYR--SAKGIILVYDITKKETFDDLPKW---MKM 123 (192)
T ss_dssp -----------------TEEEEEEEEEECCSGGGHH------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHH---HHH
T ss_pred -----------------CeEEEEEEEeCCCcHHHHH------HHHHHhc--CCCEEEEEEECcCHHHHHHHHHH---HHH
Confidence 1235789999999877521 1112222 3589999999876322 22233 222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+......++|+++|+||+|+....... .+....+. ......+++++||++|.||++
T Consensus 124 i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 124 IDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFA----------------------QQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HTSTTCEEEECBTTTTBSHHH
T ss_pred HHHhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------HhcCCCeEEEEeCCCCCCHHH
Confidence 233344579999999999997542210 01111111 112357899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
+|+.|.+.+.
T Consensus 180 l~~~l~~~i~ 189 (192)
T 2il1_A 180 IFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 26
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=3e-21 Score=164.09 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=97.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+++|.+|||||||+++|++..+...+..+ .. ..+...+ ...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t-------~~-~~~~~~~-----------------------~~~-- 74 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------VF-DNYSANV-----------------------MVD-- 74 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCC-------SE-EEEEEEE-----------------------ECC--
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCe-------ec-ceeEEEE-----------------------EEC--
Confidence 45689999999999999999999987664322111 10 0000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||++++...... .-..+|++++|+|.............++..+..
T Consensus 75 ----------------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 130 (204)
T 4gzl_A 75 ----------------GKPVNLGLWDTAGLEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130 (204)
T ss_dssp -----------------CEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred ----------------CEEEEEEEEECCCchhhHHHHHH--------HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 12346679999999776211100 113469999999987532211110011211111
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
. ..++|+++|+||+|+.......+...... ...+.......+.......+++++||++|.||+++|+
T Consensus 131 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 131 H-CPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp H-CSSCCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred h-CCCCCEEEEEechhhccchhhhhhhhccc------------cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHH
Confidence 1 14799999999999987653222211100 0000000111111223345799999999999999999
Q ss_pred HHHHH
Q 020549 307 AVEES 311 (324)
Q Consensus 307 ~i~~~ 311 (324)
.|.+.
T Consensus 198 ~l~~~ 202 (204)
T 4gzl_A 198 EAIRA 202 (204)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99874
No 27
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=7.5e-21 Score=159.64 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=102.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+|+|++|||||||+++|++..+......++ + ....... +...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~----~~~~~~~-------------------------~~~~- 68 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV-G----IDFKVKT-------------------------VYRH- 68 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE-T----TTEEEEE-------------------------EEET-
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe-e----eEEEEEE-------------------------EEEC-
Confidence 3456899999999999999999999987765443332 0 0000000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~ 223 (324)
.....+.||||||+.++. ......+ ..+|++++|+|..... .....| +..
T Consensus 69 -----------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~ 120 (191)
T 3dz8_A 69 -----------------EKRVKLQIWDTAGQERYR------TITTAYY--RGAMGFILMYDITNEESFNAVQDW---ATQ 120 (191)
T ss_dssp -----------------TTTEEEEEECHHHHHHCH------HHHHHHH--TTCCEEEEEEETTCHHHHHTHHHH---HHH
T ss_pred -----------------CEEEEEEEEeCCChHHHH------HHHHHHH--ccCCEEEEEEECcCHHHHHHHHHH---HHH
Confidence 224578999999976651 1111222 3468999999986531 122233 222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+......++|+++|+||+|+....... .+....+. .. .+.+++++||++|.||++
T Consensus 121 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 121 IKTYSWDNAQVILVGNKCDMEEERVVP--TEKGQLLA----------------------EQ-LGFDFFEASAKENISVRQ 175 (191)
T ss_dssp HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-HTCEEEECBTTTTBSHHH
T ss_pred HHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------HH-cCCeEEEEECCCCCCHHH
Confidence 233333689999999999986542210 01111111 11 146899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEF 315 (324)
Q Consensus 304 l~~~i~~~~~~~ 315 (324)
+|+.|.+.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 28
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=1.7e-20 Score=157.51 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=99.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+|+|++|||||||+++|++..+......++ +.. +.. . .+...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~- 66 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----GVE---FGA----R------------------MVNID- 66 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----C-----CSS---EEE----E------------------EEEET-
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-----cce---eEE----E------------------EEEEC-
Confidence 3456789999999999999999999887654222111 000 000 0 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. ... ..+ ..+|++++|+|....... ......+..+.
T Consensus 67 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~d~ii~v~d~~~~~s~-~~~~~~l~~i~ 120 (191)
T 2a5j_A 67 -----------------GKQIKLQIWDTAGQESFRS--ITR----SYY--RGAAGALLVYDITRRETF-NHLTSWLEDAR 120 (191)
T ss_dssp -----------------TEEEEEEEECCTTGGGTSC--CCH----HHH--TTCSEEEEEEETTCHHHH-HTHHHHHHHHH
T ss_pred -----------------CEEEEEEEEECCCchhhhh--hHH----HHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHH
Confidence 1235789999999877521 111 111 346899999998653211 11111122222
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....+.|+++|+||+|+.+..... .+....+.. . .+.+++++||++|.||+++|
T Consensus 121 ~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 121 QHSSSNMVIMLIGNKSDLESRRDVK--REEGEAFAR---------------------E--HGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp HHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHHHHH
T ss_pred HhcCCCCCEEEEEECcccCCccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHH
Confidence 2233579999999999997532210 011111111 1 14689999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 306 KAVEESAQEF 315 (324)
Q Consensus 306 ~~i~~~~~~~ 315 (324)
..|.+.+.+.
T Consensus 176 ~~l~~~i~~~ 185 (191)
T 2a5j_A 176 INTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 29
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=8.7e-21 Score=167.04 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=99.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|.+|||||||+|+|++..+.. +..++++..... +.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-------~~~pg~Tv~~~~------------------------~~~~------ 44 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV-------GNWPGVTVEKKT------------------------GEFL------ 44 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE-------EECTTSSSEEEE------------------------EEEE------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc-------cCCCCceEEEEE------------------------EEEE------
Confidence 479999999999999999999875321 111222110000 1110
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh---hhHHHHH-HHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS---ASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~-~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+..+.||||||+..+.... .....+. .++....+|++++|+|+... ... +....
T Consensus 45 -------------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----~~~---~~l~~ 104 (256)
T 3iby_A 45 -------------LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----ERH---LYLTS 104 (256)
T ss_dssp -------------ETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----HHH---HHHHH
T ss_pred -------------ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----hhH---HHHHH
Confidence 124578999999998763210 2222233 33333568999999999651 111 22234
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.+...++|+++|+||+|+....... .....+.+ .. +++++++||++|.|+++|+
T Consensus 105 ~l~~~~~pvilv~NK~Dl~~~~~~~---~~~~~l~~----------------------~l-g~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 105 QLFELGKPVVVALNMMDIAEHRGIS---IDTEKLES----------------------LL-GCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp HHTTSCSCEEEEEECHHHHHHTTCE---ECHHHHHH----------------------HH-CSCEEECBGGGTBSHHHHH
T ss_pred HHHHcCCCEEEEEEChhcCCcCCcH---HHHHHHHH----------------------Hc-CCCEEEEECCCCCCHHHHH
Confidence 5566789999999999987543211 11111111 11 4799999999999999999
Q ss_pred HHHHHH
Q 020549 306 KAVEES 311 (324)
Q Consensus 306 ~~i~~~ 311 (324)
+.|.+.
T Consensus 159 ~~i~~~ 164 (256)
T 3iby_A 159 QSLLHC 164 (256)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999875
No 30
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=165.12 Aligned_cols=170 Identities=18% Similarity=0.098 Sum_probs=97.7
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...+.++|+|+|.+|||||||+++|++..+...+..++ . ..+...+ ..
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~- 67 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV-------E-NTYSKIV-----------------------TL- 67 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCS-------E-EEEEEEE-----------------------C--
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCcc-------c-eEEEEEE-----------------------EE-
Confidence 34567899999999999999999999987654321110 0 0000000 00
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLY 222 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~ 222 (324)
......+.||||||+.++.. .... . -..+|++++|+|..... .....|...+.
T Consensus 68 -----------------~~~~~~~~l~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 122 (201)
T 3oes_A 68 -----------------GKDEFHLHLVDTAGQDEYSI--LPYS----F--IIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122 (201)
T ss_dssp --------------------CEEEEEEEECCCCTTCC--CCGG----G--TTTCCEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred -----------------CCEEEEEEEEECCCccchHH--HHHH----H--HhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 02256789999999887621 1110 0 12368999999986532 11122211110
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
......++|+++|+||+|+........ .....+.. . .+.+++++||++|.||+
T Consensus 123 --~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 123 --EGHGKTRVPVVLVGNKADLSPEREVQA--VEGKKLAE---------------------S--WGATFMESSARENQLTQ 175 (201)
T ss_dssp --C-----CCCEEEEEECTTCGGGCCSCH--HHHHHHHH---------------------H--HTCEEEECCTTCHHHHH
T ss_pred --HhcCCCCCCEEEEEECccCccccccCH--HHHHHHHH---------------------H--hCCeEEEEeCCCCCCHH
Confidence 111234789999999999975432110 01111111 1 24689999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 020549 303 AYFKAVEESAQEFMET 318 (324)
Q Consensus 303 ~l~~~i~~~~~~~~~~ 318 (324)
++|..|.+.+......
T Consensus 176 ~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 176 GIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999988765443
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4e-21 Score=161.53 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=98.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+|+|++|||||||+++|++..+......+ . ...+.. . .+...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~-------~-~~~~~~----~------------------~~~~~- 68 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT-------I-GASFMT----K------------------TVPCG- 68 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCC-------S-SEEEEE----E------------------EEECS-
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCC-------c-ceeEEE----E------------------EEEeC-
Confidence 345689999999999999999999988654321100 0 000000 0 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. .. ...+ ..+|++++|+|....... .....++..+.
T Consensus 69 -----------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~--~~~d~iilV~d~~~~~s~-~~~~~~~~~i~ 122 (192)
T 2fg5_A 69 -----------------NELHKFLIWDTAGQERFHS--LA----PMYY--RGSAAAVIVYDITKQDSF-YTLKKWVKELK 122 (192)
T ss_dssp -----------------SSEEEEEEEEECCSGGGGG--GT----HHHH--TTCSEEEEEEETTCTHHH-HHHHHHHHHHH
T ss_pred -----------------CEEEEEEEEcCCCchhhHh--hh----HHhh--ccCCEEEEEEeCCCHHHH-HHHHHHHHHHH
Confidence 1245789999999877521 11 1122 346899999998654211 11111122222
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+++|+||+|+...... ..++...+.+ . .+.+++++||++|.|+++++
T Consensus 123 ~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 123 EHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAE---------------------S--IGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp HHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHH---------------------T--TTCEEEECBTTTTBSHHHHH
T ss_pred HhCCCCCcEEEEEECccccccccc--CHHHHHHHHH---------------------H--cCCEEEEEeCCCCcCHHHHH
Confidence 223347999999999999753211 0111111111 1 14689999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 306 KAVEESAQEFM 316 (324)
Q Consensus 306 ~~i~~~~~~~~ 316 (324)
+.|.+.+.+.+
T Consensus 178 ~~l~~~i~~~~ 188 (192)
T 2fg5_A 178 QGISRQIPPLD 188 (192)
T ss_dssp HHHHHTCC---
T ss_pred HHHHHHHHhhC
Confidence 99998775443
No 32
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=164.28 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=90.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|.+|||||||+++|++..+...+.++ .. ..+...+ ...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t-------~~-~~~~~~~-----------------------~~~-- 78 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT-------VF-ERYMVNL-----------------------QVK-- 78 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCC-------CC-EEEEEEE-----------------------EET--
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------cc-eeEEEEE-----------------------EEC--
Confidence 35689999999999999999999987654322111 00 0000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh---HHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT---FMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~---~~~~~~~~ 223 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|......-.. .|...+
T Consensus 79 ----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-- 132 (214)
T 2j1l_A 79 ----------------GKPVHLHIWDTAGQDDYDR------LRPLFY--PDASVLLLCFDVTSPNSFDNIFNRWYPEV-- 132 (214)
T ss_dssp ----------------TEEEEEEEEEC-----------------------CEEEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred ----------------CEEEEEEEEECCCchhhhH------HHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHH--
Confidence 1234788999999877521 111111 24689999999865321111 222111
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
.. ...++|+++|+||+|+.......+...... .. .+....+..+.......+++++||++|.||++
T Consensus 133 -~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 133 -NH-FCKKVPIIVVGCKTDLRKDKSLVNKLRRNG-------LE-----PVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198 (214)
T ss_dssp -HH-HCSSCCEEEEEECGGGGSCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred -HH-hCCCCCEEEEEEChhhhccchhhhhhcccc-------cC-----cccHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 11 124799999999999987643322211000 00 00000000000112234899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEFM 316 (324)
Q Consensus 304 l~~~i~~~~~~~~ 316 (324)
+|..|.+.+.+.+
T Consensus 199 l~~~l~~~~~~~~ 211 (214)
T 2j1l_A 199 VFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886544
No 33
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=5.8e-21 Score=168.38 Aligned_cols=163 Identities=23% Similarity=0.252 Sum_probs=101.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|.+|||||||+|+|++..+.. ..+|+.+ ++.. .+.+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~-------------~~~pg~t-v~~~-----------------~~~~~---- 48 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYV-------------ANWPGVT-VEKK-----------------EGVFT---- 48 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEE-------------EECTTSC-CEEE-----------------EEEEE----
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcc-------------cCCCCce-EEEE-----------------EEEEE----
Confidence 34789999999999999999999865431 1112111 0000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||+..+............++....+|++++|+|+.... . . +.....+
T Consensus 49 ---------------~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---~-~---~~~~~~l 106 (258)
T 3a1s_A 49 ---------------YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---Q-S---LYLLLEI 106 (258)
T ss_dssp ---------------ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---H-H---HHHHHHH
T ss_pred ---------------ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---h-H---HHHHHHH
Confidence 1246789999999987632221122222333335689999999997632 1 1 1112334
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+....... .....+.+ .+ +++++++||++|.|+++|++.
T Consensus 107 ~~~~~pvilv~NK~Dl~~~~~i~---~~~~~l~~----------------------~l-g~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 107 LEMEKKVILAMTAIDEAKKTGMK---IDRYELQK----------------------HL-GIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp HTTTCCEEEEEECHHHHHHTTCC---BCHHHHHH----------------------HH-CSCEEECCTTTCTTHHHHHHH
T ss_pred HhcCCCEEEEEECcCCCCccchH---HHHHHHHH----------------------Hc-CCCEEEEEeeCCcCHHHHHHH
Confidence 45689999999999986432211 11121111 11 479999999999999999999
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
|.+.+.
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998765
No 34
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=2e-20 Score=154.97 Aligned_cols=168 Identities=16% Similarity=0.200 Sum_probs=94.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|++|||||||+++|++..+.....+++ +....... +. .
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~~~~~~~~--~~-----------------------~--- 52 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-----GADFLTKE--VT-----------------------V--- 52 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C-----CCSCEEEE--EC-----------------------C---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-----ceEEEEEE--EE-----------------------E---
Confidence 356889999999999999999999887654322211 00000000 00 0
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
. ......+.||||||+.++.. .... .-..+|++++|+|...... ....|...+
T Consensus 53 --~------------~~~~~~~~l~Dt~G~~~~~~------~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~--- 107 (182)
T 1ky3_A 53 --D------------GDKVATMQVWDTAGQERFQS------LGVA--FYRGADCCVLVYDVTNASSFENIKSWRDEF--- 107 (182)
T ss_dssp --S------------SSCCEEEEEECCC----------------C--CSTTCCEEEEEEETTCHHHHHTHHHHHHHH---
T ss_pred --c------------CCcEEEEEEEECCCChHhhh------hhHH--HhhcCCEEEEEEECCChHHHHHHHHHHHHH---
Confidence 0 01135789999999876521 0000 0134699999999865421 122232211
Q ss_pred HHHh----hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 225 SILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 225 ~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.... ..++|+++|+||+|+....... ..+....+. ......+++++||++|.|
T Consensus 108 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 108 LVHANVNSPETFPFVILGNKIDAEESKKIV-SEKSAQELA----------------------KSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp HHHHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHHHHHH----------------------HHTTSCCEEEEBTTTTBS
T ss_pred HHHhcccCcCCCcEEEEEECCccccccccC-CHHHHHHHH----------------------HhcCCCeEEEEecCCCCC
Confidence 2222 2578999999999996442110 001111111 112357899999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQEF 315 (324)
Q Consensus 301 v~~l~~~i~~~~~~~ 315 (324)
++++|+.|.+.+.+.
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=1e-20 Score=158.45 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=99.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+......+ . +.+.... .+...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-------~-----~~~~~~~------------------~~~~~-- 67 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVST-------V-----GIDFKVK------------------TVYRH-- 67 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-------C-----CCEEEEE------------------EEEET--
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-------e-----eEEEEEE------------------EEEEC--
Confidence 34578999999999999999999988765322110 0 0000000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. ... .. -..+|++++|+|..... .....| +..+
T Consensus 68 ----------------~~~~~~~l~Dt~G~~~~~~--~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i 120 (189)
T 2gf9_A 68 ----------------DKRIKLQIWDTAGQERYRT--ITT----AY--YRGAMGFLLMYDIANQESFAAVQDW---ATQI 120 (189)
T ss_dssp ----------------TEEEEEEEEECCSCCSSCC--SGG----GG--GTTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred ----------------CeEEEEEEEeCCCcHHHhh--hHH----Hh--ccCCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence 1245789999999877521 111 01 13468999999986532 111222 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......+.|+++|+||+|+....... .+....+.+ . . +.+++++||++|.|++++
T Consensus 121 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 121 KTYSWDNAQVILVGNKCDLEDERVVP--AEDGRRLAD---------------------D-L-GFEFFEASAKENINVKQV 175 (189)
T ss_dssp HHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSHHHH
T ss_pred HHhcCCCCCEEEEEECcccccccCCC--HHHHHHHHH---------------------H-c-CCeEEEEECCCCCCHHHH
Confidence 22223579999999999997542210 011111111 1 1 368999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|+.|.+.+.+.
T Consensus 176 ~~~l~~~i~~~ 186 (189)
T 2gf9_A 176 FERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 36
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=3.6e-20 Score=151.00 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=94.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+... .|+.. .... .+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~--------~~t~~-~~~~-------------------------~~~------ 40 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT--------IPTIG-FNVE-------------------------TVE------ 40 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC--------CCCSS-CCEE-------------------------EEE------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc--------cCcCc-eeEE-------------------------EEE------
Confidence 3799999999999999999998765421 11111 0000 000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-HHHh
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILY 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~~~ 228 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|......- ......+..+ ....
T Consensus 41 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~ 98 (164)
T 1r8s_A 41 -------------YKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRERV-NEAREELMRMLAEDE 98 (164)
T ss_dssp -------------CSSCEEEEEECCCCGGGHH------HHHHHT--TTCSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG
T ss_pred -------------ECCEEEEEEEcCCChhhHH------HHHHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHHhchh
Confidence 1256899999999877511 111112 346999999998764211 1111111111 1112
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
..+.|+++|+||+|+.+.....++...+. . .. ....+++++||++|.|++++++
T Consensus 99 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 99 LRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------L---HSLRHRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred hcCCeEEEEEECcCCcCCCCHHHHHHHhC---------------------c---ccccCccEEEEEcccCCCcCHHHHHH
Confidence 24789999999999976432111111110 0 00 0135799999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.|.+.+.
T Consensus 155 ~l~~~i~ 161 (164)
T 1r8s_A 155 WLSNQLR 161 (164)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998764
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.84 E-value=1.1e-20 Score=158.25 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=100.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccc--cccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA--ANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...++|+|+|++|||||||+++|++..+......++ . ..+. ..+.... .+.+....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-------~-~~~~~~~~~~~~~-------------~~~~~~~~- 66 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV-------G-IDFREKRVVYRAN-------------GPDGAVGR- 66 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC-------S-EEEEEEEEEECTT-------------SCCCSSCC-
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccccc-------c-eeeeeEEEEEecC-------------Cccccccc-
Confidence 456889999999999999999999876643221110 0 0000 0000000 00000000
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+........ ....+..+
T Consensus 67 ------------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i 119 (195)
T 3bc1_A 67 ------------------GQRIHLQLWDTAGLERFRS------LTTAFF--RDAMGFLLLFDLTNEQSFLN-VRNWISQL 119 (195)
T ss_dssp ------------------CEEEEEEEEEECCSGGGHH------HHHHTT--TTCSEEEEEEETTCHHHHHT-HHHHHHHH
T ss_pred ------------------CcEEEEEEEeCCCcHHHHH------HHHHHH--cCCCEEEEEEECCCHHHHHH-HHHHHHHH
Confidence 1135789999999876511 111111 34699999999865322111 11112211
Q ss_pred HHHhh-cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 225 SILYK-TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
..... .++|+++|+||+|+....... .+....+.. . .+.+++++||++|.|+++
T Consensus 120 ~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 120 QMHAYSENPDIVLCGNKSDLEDQRAVK--EEEARELAE---------------------K--YGIPYFETSAANGTNISH 174 (195)
T ss_dssp HHHSSSSSCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCCEEECCTTTCTTHHH
T ss_pred HHhcCCCCCCEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCCEEEEECCCCCCHHH
Confidence 22222 579999999999997532210 011111111 1 146899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEFM 316 (324)
Q Consensus 304 l~~~i~~~~~~~~ 316 (324)
+|+.|.+.+.+..
T Consensus 175 l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 175 AIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 38
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=3.5e-21 Score=159.47 Aligned_cols=162 Identities=13% Similarity=0.153 Sum_probs=97.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||+++|++..+.. .. ++.. ..+...+. ..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~-------~t~~-~~~~~~~~-----------------------~~--- 50 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LE-------KTES-EQYKKEML-----------------------VD--- 50 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS-------SCSS-SEEEEEEE-----------------------ET---
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cC-------CCcc-eeEEEEEE-----------------------EC---
Confidence 45889999999999999999999986653 11 1110 00000000 00
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||++++. +++ .+|++++|+|..... .....|...+ .
T Consensus 51 ---------------~~~~~l~i~Dt~G~~~~~-----------~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~i---~ 99 (178)
T 2iwr_A 51 ---------------GQTHLVLIREEAGAPDAK-----------FSG--WADAVIFVFSLEDENSFQAVSRLHGQL---S 99 (178)
T ss_dssp ---------------TEEEEEEEEECSSSCCHH-----------HHH--HCSEEEEEEETTCHHHHHHHHHHHHHH---H
T ss_pred ---------------CEEEEEEEEECCCCchhH-----------HHH--hCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence 123568899999987631 111 258999999986532 2222332222 2
Q ss_pred HHhh---cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 226 ILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 226 ~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
.+.. .++|+++|+||+|+.......-..+....+. ....+.+++++||++|.|++
T Consensus 100 ~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 100 SLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX----------------------ADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp HHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH----------------------HHHSSEEEEEEBTTTTBTHH
T ss_pred HHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH----------------------HhhcCCeEEEEeccccCCHH
Confidence 2222 4789999999999953110000001111111 11234689999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEFME 317 (324)
Q Consensus 303 ~l~~~i~~~~~~~~~ 317 (324)
++|+.|.+.+.....
T Consensus 158 ~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998865443
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.84 E-value=4.6e-21 Score=161.29 Aligned_cols=166 Identities=18% Similarity=0.093 Sum_probs=98.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+..+|+++|.+|||||||+++|++..+...+.+++ . ..+...+ ...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~~- 67 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV-------F-ENFSHVM-----------------------KYK- 67 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------EET-
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee-------e-eeeEEEE-----------------------EEC-
Confidence 3456899999999999999999999987643221110 0 0000000 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch---hHHHhHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM---TFMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~---~~~~~~~~ 222 (324)
.....+.||||||++++.. .... .-..+|++++|+|........ ..|...+
T Consensus 68 -----------------~~~~~~~i~Dt~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~- 121 (194)
T 3reg_A 68 -----------------NEEFILHLWDTAGQEEYDR--LRPL------SYADSDVVLLCFAVNNRTSFDNISTKWEPEI- 121 (194)
T ss_dssp -----------------TEEEEEEEEEECCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH-
T ss_pred -----------------CEEEEEEEEECCCcHHHHH--HhHh------hccCCcEEEEEEECCCHHHHHHHHHHHHHHH-
Confidence 1245678999999877621 1110 113468999999987532111 1232222
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
.. ...++|+++|+||+|+..........+....+. .......++++||++|.||+
T Consensus 122 --~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 122 --KH-YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC----------------------QKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp --HH-HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH----------------------HHHTCSCEEECBTTTTBSHH
T ss_pred --HH-hCCCCCEEEEEEChhhccCCCCcccHHHHHHHH----------------------HhcCCCEEEEeecCCCCCHH
Confidence 21 224689999999999986421100111111111 11222349999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQE 314 (324)
Q Consensus 303 ~l~~~i~~~~~~ 314 (324)
++|+.|.+.+..
T Consensus 177 ~l~~~l~~~i~~ 188 (194)
T 3reg_A 177 EVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 40
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=1.3e-20 Score=153.14 Aligned_cols=157 Identities=22% Similarity=0.294 Sum_probs=95.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+... ...+.++ .+.. .....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~~~~~-~~~~-----------------~~~~~------ 45 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV------------ADVPGVT-RDLK-----------------EGVVE------ 45 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------------------CCE-----------------EEEEE------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec------------cCCCCce-ecce-----------------EEEEE------
Confidence 5799999999999999999998754311 1111110 0000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||+.++.. ....+..... -..+|++++++|+..+......+. . ..+
T Consensus 46 -------------~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~ 104 (161)
T 2dyk_A 46 -------------TDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEV--A---EYL 104 (161)
T ss_dssp -------------ETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHH--H---HHH
T ss_pred -------------eCCceEEEEECCCCCCccc---hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHH--H---HHH
Confidence 1244788999999876421 1111112111 135799999999988765544321 1 233
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+.+... ....+. . ....+++++||++|.|++++|+.
T Consensus 105 ~~~~~p~ilv~nK~Dl~~~~~---~~~~~~-------------------------~-~~~~~~~~~Sa~~~~gv~~l~~~ 155 (161)
T 2dyk_A 105 RRKGKPVILVATKVDDPKHEL---YLGPLY-------------------------G-LGFGDPIPTSSEHARGLEELLEA 155 (161)
T ss_dssp HHHTCCEEEEEECCCSGGGGG---GCGGGG-------------------------G-GSSCSCEECBTTTTBSHHHHHHH
T ss_pred HhcCCCEEEEEECcccccchH---hHHHHH-------------------------h-CCCCCeEEEecccCCChHHHHHH
Confidence 346899999999999976521 111110 0 12237999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 156 l~~~l 160 (161)
T 2dyk_A 156 IWERL 160 (161)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98765
No 41
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=159.55 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=97.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|.+|||||||+++|++..+......++ +.. +.. . .+...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~-- 74 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI-----GVD---FTM----K------------------TLEIQ-- 74 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC---------------C---EEE----E------------------EEEET--
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc-----ceE---EEE----E------------------EEEEC--
Confidence 445789999999999999999999887653222211 000 000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|..... .....| +..+
T Consensus 75 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~---~~~i 127 (201)
T 2hup_A 75 ----------------GKRVKLQIWDTAGQERFRT------ITQSYY--RSANGAILAYDITKRSSFLSVPHW---IEDV 127 (201)
T ss_dssp ----------------TEEEEEEEECCTTCGGGHH------HHHHHH--TTCSEEEEEEETTBHHHHHTHHHH---HHHH
T ss_pred ----------------CEEEEEEEEECCCcHhHHH------HHHHHH--hhCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence 1135789999999877521 111222 3468999999986532 122223 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccC-ceeeeccccCCChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~iv~vSA~~g~gv~~ 303 (324)
......++|+++|+||+|+....... .++...+. ... +. +++++||++|.||++
T Consensus 128 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 128 RKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLA----------------------EHY-DILCAIETSAKDSSNVEE 182 (201)
T ss_dssp HHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHT-TCSEEEECBTTTTBSHHH
T ss_pred HHhcCCCCCEEEEEECCccccccccC--HHHHHHHH----------------------HHc-CCCEEEEEeCCCCCCHHH
Confidence 22233679999999999997532110 11111111 111 34 899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEF 315 (324)
Q Consensus 304 l~~~i~~~~~~~ 315 (324)
+|..|.+.+...
T Consensus 183 l~~~l~~~i~~~ 194 (201)
T 2hup_A 183 AFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 42
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=3.6e-20 Score=151.93 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=98.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+++|++|||||||+++|++..+... .++.. ..... +.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------~~t~~-~~~~~------------------------~~---- 47 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT--------IPTIG-FNVET------------------------VT---- 47 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC--------CCCSS-EEEEE------------------------EE----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc--------CCcCc-cceEE------------------------EE----
Confidence 3568899999999999999999988765321 01110 00000 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .... . -..+|++++|+|+.....-.. ....+. ..
T Consensus 48 ----------------~~~~~~~~~Dt~G~~~~~~--~~~~----~--~~~~d~ii~v~d~~~~~s~~~-~~~~~~--~~ 100 (171)
T 1upt_A 48 ----------------YKNLKFQVWDLGGLTSIRP--YWRC----Y--YSNTDAVIYVVDSCDRDRIGI-SKSELV--AM 100 (171)
T ss_dssp ----------------ETTEEEEEEEECCCGGGGG--GGGG----G--CTTCSEEEEEEETTCCTTHHH-HHHHHH--HH
T ss_pred ----------------ECCEEEEEEECCCChhhhH--HHHH----H--hccCCEEEEEEECCCHHHHHH-HHHHHH--HH
Confidence 1245789999999877521 1110 1 134699999999876532211 111111 12
Q ss_pred Hh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 227 ~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+. ..+.|+++|+||+|+.+.....++.+.+. ... -.....+++++||++|.|+++
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 101 LEEEELRKAILVVFANKQDMEQAMTSSEMANSLG---------------------LPA-LKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GGG-CTTSCEEEEECCTTTCTTHHH
T ss_pred HhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhC---------------------chh-ccCCceEEEECcCCCCcCHHH
Confidence 22 25799999999999987532211211110 000 001235799999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 304 YFKAVEESAQE 314 (324)
Q Consensus 304 l~~~i~~~~~~ 314 (324)
+++.|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=1.1e-20 Score=161.21 Aligned_cols=166 Identities=17% Similarity=0.119 Sum_probs=99.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...+.++ +. ..+...+ ...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t-------~~-~~~~~~~-----------------------~~~-- 53 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-------VF-DNFSANV-----------------------AVD-- 53 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCS-------SC-CCEEEEE-----------------------ECS--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCc-------cc-eeEEEEE-----------------------EEC--
Confidence 35688999999999999999999987664322111 10 0000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chh-HHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~-~~~~~~~~ 223 (324)
.....+.||||||++++...... .-..+|++++|+|...... ... .|...+
T Consensus 54 ----------------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~-- 107 (212)
T 2j0v_A 54 ----------------GQIVNLGLWDTAGQEDYSRLRPL--------SYRGADIFVLAFSLISKASYENVLKKWMPEL-- 107 (212)
T ss_dssp ----------------SCEEEEEEECCCCCCCCCC--CG--------GGTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred ----------------CEEEEEEEEECCCcHHHHHHHHh--------hccCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence 12357889999999876211100 1134689999999865321 111 232211
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHH------HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALE------WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS 297 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~ 297 (324)
... ..+.|+++|+||+|+........ ..+....+ + ......+++++||++
T Consensus 108 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~--------------~--------~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 108 -RRF-APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL--------------R--------KQIGAAAYIECSSKT 163 (212)
T ss_dssp -HHH-CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH--------------H--------HHHTCSEEEECCTTT
T ss_pred -HHh-CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH--------------H--------HHcCCceEEEccCCC
Confidence 211 13799999999999976532100 00111111 1 112235899999999
Q ss_pred CCChHHHHHHHHHHHHHH
Q 020549 298 GAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 298 g~gv~~l~~~i~~~~~~~ 315 (324)
|.||+++|+.|.+.+...
T Consensus 164 g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988653
No 44
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=8.4e-20 Score=157.79 Aligned_cols=175 Identities=17% Similarity=0.213 Sum_probs=101.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|.+|||||||+++|++..+... ..++++. ++. -+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~-------------~~~~~t~-~~~-----------------~~~~~--- 72 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ-------------SYSFTTK-NLY-----------------VGHFD--- 72 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE-------------CC------CEE-----------------EEEEE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-------------CCCCcce-eee-----------------eeeee---
Confidence 4568999999999999999999998755311 1111110 000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh--h-HHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--S-GAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLY 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~-~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~ 222 (324)
.....+.||||||+.+...... . ...+... ...+|++++|+|+....... ..+...+
T Consensus 73 ----------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~- 133 (228)
T 2qu8_A 73 ----------------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLF- 133 (228)
T ss_dssp ----------------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHH-
T ss_pred ----------------cCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHH-
Confidence 1245789999999854311011 0 1111111 23468999999987653321 2222222
Q ss_pred HHHHHhhc--CCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549 223 ACSILYKT--RLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (324)
Q Consensus 223 ~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~ 299 (324)
..+... ++|+++|+||+|+........ .......+.. ......+++++||++|.
T Consensus 134 --~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~SA~~g~ 190 (228)
T 2qu8_A 134 --YSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD---------------------NVKNPIKFSSFSTLTGV 190 (228)
T ss_dssp --HHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH---------------------HCCSCEEEEECCTTTCT
T ss_pred --HHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH---------------------hcCCCceEEEEecccCC
Confidence 333333 799999999999987543211 1111111110 11112689999999999
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQEFME 317 (324)
Q Consensus 300 gv~~l~~~i~~~~~~~~~ 317 (324)
||+++|+.|.+.+....+
T Consensus 191 gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 191 GVEQAKITACELLKNDQA 208 (228)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998865443
No 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.5e-20 Score=158.02 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=98.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+++|++..+...+.+ +.. ..+...+ ...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~-------t~~-~~~~~~~-----------------------~~~-- 62 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVP-------TVF-DHYAVSV-----------------------TVG-- 62 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCC-------SSC-CCEEEEE-----------------------ESS--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccc-ceeEEEE-----------------------EEC--
Confidence 3457899999999999999999998865432211 110 0000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cchh-HHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMT-FMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~-~~~~~~~~ 223 (324)
.....+.||||||+.++.. .... .-..+|++++|+|..... .... .|...+
T Consensus 63 ----------------~~~~~~~i~D~~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-- 116 (194)
T 2atx_A 63 ----------------GKQYLLGLYDTAGQEDYDR--LRPL------SYPMTDVFLICFSVVNPASFQNVKEEWVPEL-- 116 (194)
T ss_dssp ----------------SCEEEEEEECCCCSSSSTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred ----------------CEEEEEEEEECCCCcchhH--HHHH------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence 1235788999999887621 1100 113468999999986532 1111 232211
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
... ..++|+++|+||+|+.......+...... .. .+..+....+.......+++++||++|.||++
T Consensus 117 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 117 -KEY-APNVPFLLIGTQIDLRDDPKTLARLNDMK-------EK-----PICVEQGQKLAKEIGACCYVECSALTQKGLKT 182 (194)
T ss_dssp -HHH-STTCCEEEEEECTTSTTCHHHHHHHTTTT-------CC-----CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHH
T ss_pred -HHh-CCCCCEEEEEEChhhcccccchhhccccc-------Cc-----ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHH
Confidence 111 23799999999999987542211111000 00 00000000000112334899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
+|+.|.+.+.
T Consensus 183 l~~~l~~~i~ 192 (194)
T 2atx_A 183 VFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 46
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=8.6e-21 Score=162.56 Aligned_cols=181 Identities=14% Similarity=0.077 Sum_probs=99.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+|+|.+|||||||+++|++..+...+.+++ . ..+...+ ..
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~-- 70 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-------F-ENYTACL-----------------------ET-- 70 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------EC--
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee-------e-eeEEEEE-----------------------EE--
Confidence 3456899999999999999999999987654322111 0 0000000 00
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--c-hhHHHhHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--P-MTFMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~-~~~~~~~~~ 222 (324)
......+.||||||+.++.. .... . -..+|++++|+|...... . ...|...+
T Consensus 71 ----------------~~~~~~l~i~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i- 125 (214)
T 3q3j_B 71 ----------------EEQRVELSLWDTSGSPYYDN--VRPL----C--YSDSDAVLLCFDISRPETVDSALKKWRTEI- 125 (214)
T ss_dssp ------------------CEEEEEEEEECCSGGGTT--TGGG----G--CTTCSEEEEEEETTCTHHHHHHHTHHHHHH-
T ss_pred ----------------CCEEEEEEEEECCCCHhHHH--HHHH----H--cCCCeEEEEEEECcCHHHHHHHHHHHHHHH-
Confidence 02245788999999887621 1110 0 134689999999875322 1 12332222
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I 301 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v 301 (324)
... ..+.|+++|+||+|+........... .. ...... ...+..+.......++++|||++|.| |
T Consensus 126 --~~~-~~~~piilv~nK~Dl~~~~~~~~~~~------~~--~~~~v~----~~~~~~~~~~~~~~~~~e~SA~~g~g~v 190 (214)
T 3q3j_B 126 --LDY-CPSTRVLLIGCKTDLRTDLSTLMELS------HQ--KQAPIS----YEQGCAIAKQLGAEIYLEGSAFTSEKSI 190 (214)
T ss_dssp --HHH-CTTSEEEEEEECGGGGGCHHHHHHHH------HT--TCCCCC----HHHHHHHHHHHTCSEEEECCTTTCHHHH
T ss_pred --HHh-CCCCCEEEEEEChhhccchhhhhhhc------cc--ccCccC----HHHHHHHHHHcCCCEEEEeccCCCcccH
Confidence 222 24799999999999975421100000 00 000000 00000000112223899999999998 9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 020549 302 EAYFKAVEESAQEFMETY 319 (324)
Q Consensus 302 ~~l~~~i~~~~~~~~~~~ 319 (324)
+++|+.|.+.+.......
T Consensus 191 ~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 191 HSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhccCcCC
Confidence 999999999887655443
No 47
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=5.1e-21 Score=160.36 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=98.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.++.++|+|+|++|||||||+++|++..+...+.++ .. ..+.. +.
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~-------------------------~~-- 63 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-------VG-FNMRK-------------------------IT-- 63 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-------CS-EEEEE-------------------------EE--
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCC-------Cc-eeEEE-------------------------EE--
Confidence 345688999999999999999999987665322110 00 00000 00
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC- 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~- 224 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+.....- ......+..+
T Consensus 64 -----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~s~-~~~~~~~~~~~ 117 (188)
T 1zd9_A 64 -----------------KGNVTIKLWDIGGQPRFRS------MWERYC--RGVSAIVYMVDAADQEKI-EASKNELHNLL 117 (188)
T ss_dssp -----------------ETTEEEEEEEECCSHHHHT------THHHHH--TTCSEEEEEEETTCGGGH-HHHHHHHHHHH
T ss_pred -----------------eCCEEEEEEECCCCHhHHH------HHHHHH--ccCCEEEEEEECCCHHHH-HHHHHHHHHHH
Confidence 2256789999999877521 111122 346899999998653211 1111111111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~ 302 (324)
......++|+++|+||+|+.......++.+.+. . .. ....+++++||++|.||+
T Consensus 118 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 118 DKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN---------------------L---SAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp TCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHH
T ss_pred hCcccCCCCEEEEEECCCCccCCCHHHHHHHhC---------------------h---hhhccCCeeEEEEECCCCCCHH
Confidence 111126799999999999986422111211110 0 00 123578999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 303 AYFKAVEESAQ 313 (324)
Q Consensus 303 ~l~~~i~~~~~ 313 (324)
++|+.|.+.+.
T Consensus 174 ~l~~~l~~~~~ 184 (188)
T 1zd9_A 174 ITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 48
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.83 E-value=9.4e-21 Score=157.56 Aligned_cols=165 Identities=13% Similarity=0.174 Sum_probs=99.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+|+|++|||||||+++|++..+...+.+ +.. ..+... ....
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-------t~~-~~~~~~-----------------------~~~~- 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP-------TIE-DSYLKH-----------------------TEID- 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT-------TCC-EEEEEE-----------------------EEET-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------Ccc-ceeEEE-----------------------EEeC-
Confidence 34568899999999999999999998765432211 000 000000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~ 223 (324)
.....+.||||||+.++.. ... ..++ .+|++++|+|..... .....|...+
T Consensus 63 -----------------~~~~~l~i~Dt~G~~~~~~--~~~----~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~-- 115 (183)
T 3kkq_A 63 -----------------NQWAILDVLDTAGQEEFSA--MRE----QYMR--TGDGFLIVYSVTDKASFEHVDRFHQLI-- 115 (183)
T ss_dssp -----------------TEEEEEEEEECCSCGGGCS--SHH----HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHH--
T ss_pred -----------------CcEEEEEEEECCCchhhHH--HHH----HHHh--cCCEEEEEEECCCHHHHHHHHHHHHHH--
Confidence 1134567899999877521 111 1121 258999999987532 2223332222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc-cCCChH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIE 302 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~-~g~gv~ 302 (324)
.......++|+++|+||+|+.+..... .+....+.+ . . +.+++++||+ +|.|++
T Consensus 116 ~~~~~~~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 116 LRVKDRESFPMILVANKVDLMHLRKVT--RDQGKEMAT---------------------K-Y-NIPYIETSAKDPPLNVD 170 (183)
T ss_dssp HHHHTSSCCCEEEEEECTTCSTTCCSC--HHHHHHHHH---------------------H-H-TCCEEEEBCSSSCBSHH
T ss_pred HHhcCCCCCcEEEEEECCCchhccCcC--HHHHHHHHH---------------------H-h-CCeEEEeccCCCCCCHH
Confidence 122334679999999999997632210 011111111 1 1 3789999999 999999
Q ss_pred HHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQE 314 (324)
Q Consensus 303 ~l~~~i~~~~~~ 314 (324)
++|..|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=158.21 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=101.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...... +. +...... .+...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~-----~~~~~~~------------------~~~~~-- 61 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS-------TI-----GVDFKIR------------------TIELD-- 61 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCC-------CS-----SEEEEEE------------------EEEET--
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-------cc-----cceEEEE------------------EEEEC--
Confidence 3457899999999999999999998766532211 00 0000000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. . ....+ ..+|++++|+|..+... ....| +..+
T Consensus 62 ----------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~i 114 (196)
T 3tkl_A 62 ----------------GKTIKLQIWDTAGQERFRT--I----TSSYY--RGAHGIIVVYDVTDQESFNNVKQW---LQEI 114 (196)
T ss_dssp ----------------TEEEEEEEEEECCSGGGCT--T----HHHHH--TTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred ----------------CEEEEEEEEECCCcHhhhh--h----HHHHH--hhCCEEEEEEECcCHHHHHHHHHH---HHHH
Confidence 1135789999999877521 1 11122 34689999999876321 11223 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++|+||+|+........ .....+. . ..+.+++++||++|.|++++
T Consensus 115 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 115 DRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFA----------------------D-SLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp HHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHH----------------------H-HTTCCEEEECTTTCTTHHHH
T ss_pred HHhcCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------H-HcCCcEEEEeCCCCCCHHHH
Confidence 333345799999999999976532210 0111111 1 12468999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|..|.+.+...
T Consensus 170 ~~~l~~~i~~~ 180 (196)
T 3tkl_A 170 FMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=6.2e-21 Score=157.88 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=99.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+++|++|||||||+++|++..+...+. .++...... .+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~~~-----------------~~~~~-- 53 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD--------------PTIEDSYTK-----------------ICSVD-- 53 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC--------------TTCCEEEEE-----------------EEEET--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccC--------------CCcCceEEE-----------------EEEEC--
Confidence 356789999999999999999999875543211 111000000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. .. . ..+. .+|++++|+|..... .....|...+ +
T Consensus 54 ----------------~~~~~~~~~Dt~G~~~~~~--~~-~---~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~--~ 107 (181)
T 2fn4_A 54 ----------------GIPARLDILDTAGQEEFGA--MR-E---QYMR--AGHGFLLVFAINDRQSFNEVGKLFTQI--L 107 (181)
T ss_dssp ----------------TEEEEEEEEECCCTTTTSC--CH-H---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--H
T ss_pred ----------------CEEEEEEEEECCCchhhHH--HH-H---HHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHH--H
Confidence 1135788999999887521 11 1 1121 258899999986532 1122222111 1
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++|+||+|+.+..... ......+. . ..+.+++++||++|.|++++
T Consensus 108 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 108 RVKDRDDFPVVLVGNKADLESQRQVP--RSEASAFG----------------------A-SHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp HHHTSSCCCEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECBTTTTBSHHHH
T ss_pred HhcCCCCCCEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCeEEEecCCCCCCHHHH
Confidence 23334679999999999997643210 00111110 0 12468999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFM 316 (324)
Q Consensus 305 ~~~i~~~~~~~~ 316 (324)
++.|.+.+....
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999886543
No 51
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=2.7e-20 Score=154.84 Aligned_cols=158 Identities=19% Similarity=0.234 Sum_probs=94.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+..+|+++|.+|||||||+++|++..+.. .. ++.. .... .+.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~----~t~~-~~~~------------------------~~~--- 61 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVH----TS----PTIG-SNVE------------------------EIV--- 61 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEE----EE----CCSS-SSCE------------------------EEE---
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCc----cC----CcCc-eeeE------------------------EEE---
Confidence 4567899999999999999999999876511 00 0010 0000 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
..+..+.||||||+.++.. ... ..+ ..+|++++|+|+.....-.. ....+. .
T Consensus 62 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~d~ii~v~D~~~~~s~~~-~~~~~~--~ 113 (181)
T 2h17_A 62 -----------------INNTRFLMWDIGGQESLRS--SWN----TYY--TNTEFVIVVVDSTDRERISV-TREELY--K 113 (181)
T ss_dssp -----------------ETTEEEEEEEESSSGGGTC--GGG----GGG--TTCCEEEEEEETTCTTTHHH-HHHHHH--H
T ss_pred -----------------ECCEEEEEEECCCCHhHHH--HHH----HHh--ccCCEEEEEEECCCHHHHHH-HHHHHH--H
Confidence 1246789999999877521 111 111 34699999999876532211 111111 1
Q ss_pred HHh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCC
Q 020549 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAG 300 (324)
Q Consensus 226 ~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~g 300 (324)
.+. ..++|+++|+||+|+.......++.+.+. . .. ....+++++||++|.|
T Consensus 114 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 114 MLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------L---TSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECBTTTTBT
T ss_pred HHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC---------------------c---ccccCCceEEEEccCCCCcC
Confidence 122 36799999999999976421111111110 0 00 1134799999999999
Q ss_pred hHHHHHHHHHH
Q 020549 301 IEAYFKAVEES 311 (324)
Q Consensus 301 v~~l~~~i~~~ 311 (324)
++++|+.|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.83 E-value=9.4e-21 Score=159.13 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=99.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+......+ . ...+.. .. +...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t-------~-~~~~~~----~~------------------~~~~-- 70 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT-------I-GVEFST----RT------------------VMLG-- 70 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCC-------S-SEEEEE----EE------------------EEET--
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-------c-ceeEEE----EE------------------EEEC--
Confidence 34588999999999999999999998765322110 0 000000 00 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. . ....+ ..+|++++|+|........ ....++..+..
T Consensus 71 ----------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~vi~v~D~~~~~s~~-~~~~~l~~i~~ 125 (193)
T 2oil_A 71 ----------------TAAVKAQIWDTAGLERYRA--I----TSAYY--RGAVGALLVFDLTKHQTYA-VVERWLKELYD 125 (193)
T ss_dssp ----------------TEEEEEEEEEESCCCTTCT--T----HHHHH--TTCCEEEEEEETTCHHHHH-THHHHHHHHHT
T ss_pred ----------------CEEEEEEEEeCCCchhhhh--h----hHHHh--ccCCEEEEEEECCCHHHHH-HHHHHHHHHHH
Confidence 1245788999999877521 1 11112 3468999999986532111 11111221122
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+....... ......+. . ..+.+++++||++|.|++++|.
T Consensus 126 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 126 HAEATIVVMLVGNKSDLSQAREVP--TEEARMFA----------------------E-NNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp TSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEEECTTTCTTHHHHHH
T ss_pred hcCCCCeEEEEEECCCcccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHH
Confidence 223578999999999997542210 01111111 1 1246899999999999999999
Q ss_pred HHHHHHHHH
Q 020549 307 AVEESAQEF 315 (324)
Q Consensus 307 ~i~~~~~~~ 315 (324)
.|.+.+.+.
T Consensus 181 ~l~~~i~~~ 189 (193)
T 2oil_A 181 TVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 53
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=2.1e-20 Score=156.18 Aligned_cols=166 Identities=22% Similarity=0.242 Sum_probs=100.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||+++|++..+... ..++++..... +.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-------~~~~~t~~~~~------------------------~~~~---- 50 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-------NWPGVTVEKKE------------------------GEFE---- 50 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-------ECTTSCCEEEE------------------------EEEE----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-------CCCCeeccceE------------------------EEEE----
Confidence 457899999999999999999998643211 01111100000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||+.++............++....+|++++++|... +.....| +..+
T Consensus 51 ---------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~------~~~~ 108 (188)
T 2wjg_A 51 ---------------YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-LERNLYL------TLQL 108 (188)
T ss_dssp ---------------ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-HHHHHHH------HHHH
T ss_pred ---------------eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-HHHHHHH------HHHH
Confidence 12457899999999876321111111222333345789999999864 1111112 2334
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .....+.+ . .+.+++++||++|.|++++|+.
T Consensus 109 ~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 109 MEMGANLLLALNKMDLAKSLGIE---IDVDKLEK---------------------I--LGVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp HTTTCCEEEEEECHHHHHHTTCC---CCHHHHHH---------------------H--HTSCEEECBGGGTBSHHHHHHH
T ss_pred HhcCCCEEEEEEhhhccccccch---HHHHHHHH---------------------H--hCCCeEEEEecCCCCHHHHHHH
Confidence 45689999999999986432111 11111111 1 1368999999999999999999
Q ss_pred HHHHHHHHH
Q 020549 308 VEESAQEFM 316 (324)
Q Consensus 308 i~~~~~~~~ 316 (324)
|.+.+....
T Consensus 163 i~~~~~~~~ 171 (188)
T 2wjg_A 163 ISIAVKDKK 171 (188)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHhcc
Confidence 999886654
No 54
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.83 E-value=4.4e-21 Score=158.67 Aligned_cols=162 Identities=16% Similarity=0.225 Sum_probs=96.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.+.+|+|+|++|||||||+|+|++..+.. +...+.++ .+.. .+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------~~~~~~~t-~~~~-----------------~~~~~---- 48 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTT-RDVL-----------------REHIH---- 48 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCC-CSCE-----------------EEEEE----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce------------eeCCCCce-ecee-----------------eEEEE----
Confidence 56789999999999999999999875431 12222221 0000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCch-hHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPM-TFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~ 225 (324)
..+..+.+|||||+.++..... ...+.+.+. -..+|++++|+|+....... ..|...+ .
T Consensus 49 ---------------~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~---~ 109 (172)
T 2gj8_A 49 ---------------IDGMPLHIIDTAGLREASDEVE-RIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF---I 109 (172)
T ss_dssp ---------------ETTEEEEEEECCCCSCCSSHHH-HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHH---H
T ss_pred ---------------ECCeEEEEEECCCcccchhHHH-HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---H
Confidence 1134688999999976421110 001111111 13578999999987654322 2232222 2
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+++|+||+|+..... .+. . ....+++++||++|.|++++|
T Consensus 110 ~~~~~~~p~ilv~NK~Dl~~~~~------~~~-------------------------~-~~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 110 ARLPAKLPITVVRNKADITGETL------GMS-------------------------E-VNGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp HHSCTTCCEEEEEECHHHHCCCC------EEE-------------------------E-ETTEEEEECCTTTCTTHHHHH
T ss_pred HhcccCCCEEEEEECccCCcchh------hhh-------------------------h-ccCCceEEEeCCCCCCHHHHH
Confidence 22234699999999999854210 000 0 123579999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
+.|.+.+..
T Consensus 158 ~~l~~~~~~ 166 (172)
T 2gj8_A 158 NHLKQSMGF 166 (172)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhhh
Confidence 999887643
No 55
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=1.7e-20 Score=158.97 Aligned_cols=173 Identities=14% Similarity=0.174 Sum_probs=98.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|.+|||||||+++|++..+...+.++ .. ..+.. .+...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~-----------------------~~~~~--- 69 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VF-ENYIA-----------------------DIEVD--- 69 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCS-------SC-CCCEE-----------------------EEEET---
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCc-------cc-ceEEE-----------------------EEEEC---
Confidence 4578999999999999999999987665322110 00 00000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cch-hHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPM-TFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~-~~~~~~~~~~ 224 (324)
.....+.||||||+.++...... .-..+|++++|+|..... ... ..|...+
T Consensus 70 ---------------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--- 123 (201)
T 2gco_A 70 ---------------GKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSIDSPDSLENIPEKWTPEV--- 123 (201)
T ss_dssp ---------------TEEEEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred ---------------CEEEEEEEEECCCchhHHHHHHH--------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---
Confidence 12357889999998775211110 113468999999986532 111 1232211
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.. ...+.|+++|+||+|+.......+...... .. .+..+.+..+.......+++++||++|.||+++
T Consensus 124 ~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 190 (201)
T 2gco_A 124 KH-FCPNVPIILVGNKKDLRQDEHTRRELAKMK-------QE-----PVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190 (201)
T ss_dssp HH-HSTTCCEEEEEECGGGTTCHHHHHHHHTTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred HH-hCCCCCEEEEEecHHhhcCccchhhhcccc-------cC-----cCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHH
Confidence 11 123799999999999987643222211100 00 000000000111123347999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
|+.|.+.+.
T Consensus 191 ~~~i~~~~l 199 (201)
T 2gco_A 191 FEMATRAGL 199 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988763
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=152.53 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=88.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|++|||||||+++|++..+..... .++.+..... +...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~------~~~~~~~~~~-------------------------~~~~--- 48 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE------QLGEDVYERT-------------------------LTVD--- 48 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC------CSSSSEEEEE-------------------------EEET---
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC------ccccceeEEE-------------------------EEEC---
Confidence 45789999999999999999999876543110 0001000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. ..+... ....+|++++|+|..... .....|...+ .
T Consensus 49 ---------------~~~~~~~~~D~~g~~~~~~-----~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l---~ 104 (175)
T 2nzj_A 49 ---------------GEDTTLVVVDTWEAEKLDK-----SWSQES-CLQGGSAYVIVYSIADRGSFESASELRIQL---R 104 (175)
T ss_dssp ---------------TEEEEEEEECCC------------CHHHHH-TTTSCSEEEEEEETTCHHHHHHHHHHHHHH---H
T ss_pred ---------------CEEEEEEEEecCCCCccch-----hhhHHh-hcccCCEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence 1234788999999876310 011111 113467888888875422 1222222111 1
Q ss_pred HH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.. ...++|+++|+||+|+.+..... .+....+.. . .+.+++++||++|.|++++
T Consensus 105 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 105 RTHQADHVPIILVGNKADLARCREVS--VEEGRACAV---------------------V--FDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp HCC----CCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--HTSEEEECBTTTTBSHHHH
T ss_pred HhhccCCCCEEEEEEChhhccccccC--HHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHH
Confidence 11 12479999999999997643210 001111110 1 1368999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|+.|.+.+...
T Consensus 160 ~~~l~~~~~~~ 170 (175)
T 2nzj_A 160 FEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 57
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.83 E-value=9.6e-21 Score=156.45 Aligned_cols=165 Identities=19% Similarity=0.231 Sum_probs=98.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|.+|||||||+++|++..+...... +. ...+.. . .+...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~----~------------------~~~~~-- 60 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-------TI-GVEFGT----R------------------IIEVS-- 60 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTT-------SC-CCCEEE----E------------------EEEET--
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------cc-ceEEEE----E------------------EEEEC--
Confidence 3468899999999999999999998765432100 00 000000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+....... ....++..+..
T Consensus 61 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~ 115 (179)
T 1z0f_A 61 ----------------GQKIKLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRRSTYN-HLSSWLTDARN 115 (179)
T ss_dssp ----------------TEEEEEEEEECTTGGGTCH------HHHHHH--HTCSEEEEEEETTCHHHHH-THHHHHHHHHH
T ss_pred ----------------CeEEEEEEEECCCChHhhh------hHHHHh--ccCCEEEEEEeCcCHHHHH-HHHHHHHHHHH
Confidence 1245789999999876521 112222 2468999999987642111 11112222233
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+....... .+....+.+ . .+.+++++||++|.|++++|.
T Consensus 116 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 116 LTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAE---------------------E--NGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHHH
T ss_pred hcCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence 344679999999999996532210 011111111 1 246899999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.|.+.+.
T Consensus 171 ~l~~~i~ 177 (179)
T 1z0f_A 171 EAAKKIY 177 (179)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988763
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=158.87 Aligned_cols=178 Identities=14% Similarity=0.118 Sum_probs=95.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+++|++|||||||+++|++..+...+.++ . ...+...+ ...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t-------~-~~~~~~~~-----------------------~~~- 64 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-------A-FDNFSAVV-----------------------SVD- 64 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CC-------S-SEEEEEEE-----------------------EET-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-------c-cceeEEEE-----------------------EEC-
Confidence 456789999999999999999999987654322111 1 00000000 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh---HHHhHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT---FMSNMLY 222 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~---~~~~~~~ 222 (324)
.....+.||||||++++.. ... .. -..+|++++|+|......... .|...+
T Consensus 65 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~- 118 (201)
T 2q3h_A 65 -----------------GRPVRLQLCDTAGQDEFDK--LRP----LC--YTNTDIFLLCFSVVSPSSFQNVSEKWVPEI- 118 (201)
T ss_dssp -----------------TEEEEEEEEECCCSTTCSS--SGG----GG--GTTCSEEEEEEETTCHHHHHHHHHTHHHHH-
T ss_pred -----------------CEEEEEEEEECCCCHHHHH--HhH----hh--cCCCcEEEEEEECCCHHHHHHHHHHHHHHH-
Confidence 1134678999999987621 110 01 134689999999865321111 232211
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
... ..+.|+++|+||+|+............. . ...... +....+.......+++++||++|.||+
T Consensus 119 --~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~------~--~~~v~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 183 (201)
T 2q3h_A 119 --RCH-CPKAPIILVGTQSDLREDVKVLIELDKC------K--EKPVPE----EAAKLLAEEIKAASYIECSALTQKNLK 183 (201)
T ss_dssp --HHH-CSSSCEEEEEECGGGGGCHHHHHHHHTT------T--CCCCCH----HHHHHHHHHHTCSEEEECCTTTCTTHH
T ss_pred --HHh-CCCCCEEEEEECHhhhhchhhhhhhccc------c--cccCCH----HHHHHHHHhcCCcEEEEEecCCCCCHH
Confidence 211 2379999999999997643211110000 0 000000 000001112233489999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEFM 316 (324)
Q Consensus 303 ~l~~~i~~~~~~~~ 316 (324)
++|+.|.+.+.+..
T Consensus 184 ~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 184 EVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999886544
No 59
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=2.4e-21 Score=160.92 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=96.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|++|||||||+++|++..+...+.. +. ...+... +...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~--- 50 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDP-------TI-ENTFTKL-----------------------ITVN--- 50 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCT-------TC-CEEEEEE-----------------------EEET---
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-------Cc-cccEEEE-----------------------EEEC---
Confidence 457899999999999999999997765432110 00 0000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||++++.. .... ....+|++++|+|..... .....|...+ ..
T Consensus 51 ---------------~~~~~~~l~Dt~G~~~~~~--~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~ 105 (181)
T 3t5g_A 51 ---------------GQEYHLQLVDTAGQDEYSI--FPQT------YSIDINGYILVYSVTSIKSFEVIKVIHGKL--LD 105 (181)
T ss_dssp ---------------TEEEEEEEEECCCCCTTCC--CCGG------GTTTCSEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred ---------------CEEEEEEEEeCCCchhhhH--HHHH------HHhcCCEEEEEEECCCHHHHHHHHHHHHHH--HH
Confidence 1235678999999887621 1110 012368999999986522 1122222111 12
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+++|+||+|+....... .+....+.+ . .+.+++++||++|.|++++|
T Consensus 106 ~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 106 MVGKVQIPIMLVGNKKDLHMERVIS--YEEGKALAE---------------------S--WNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp HC----CCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTSHHHHHHHH
T ss_pred hcCCCCCCEEEEEECccchhcceec--HHHHHHHHH---------------------H--hCCcEEEEecCCCCCHHHHH
Confidence 2234579999999999996543210 011111111 1 14689999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 020549 306 KAVEESAQEFMET 318 (324)
Q Consensus 306 ~~i~~~~~~~~~~ 318 (324)
..|.+.+......
T Consensus 161 ~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 161 RRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHhcCC
Confidence 9999988764443
No 60
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=1.1e-20 Score=156.69 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=98.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+++|++..+......+ .. ..+.. . .+...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~-~~~~~----~------------------~~~~~-- 57 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQEST-------IG-AAFFS----Q------------------TLAVN-- 57 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCC-------SC-CSEEE----E------------------EEEET--
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCC-------ce-eEEEE----E------------------EEEEC--
Confidence 34578999999999999999999987665321110 00 00000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .. ...+ ..+|++++|+|+...... .....++..+..
T Consensus 58 ----------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~ 112 (181)
T 2efe_B 58 ----------------DATVKFEIWDTAGQERYHS--LA----PMYY--RGAAAAIIVFDVTNQASF-ERAKKWVQELQA 112 (181)
T ss_dssp ----------------TEEEEEEEEECCCSGGGGG--GT----HHHH--TTCSEEEEEEETTCHHHH-HHHHHHHHHHHH
T ss_pred ----------------CEEEEEEEEeCCCChhhhh--hh----HHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHHH
Confidence 1245789999999877521 11 1112 346899999998653211 111111222222
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+....... .+....+.+ ..+.+++++||++|.|+++++.
T Consensus 113 ~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 113 QGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQ-----------------------ENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp HSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHH-----------------------HTTCEEEECCSSSCTTHHHHHH
T ss_pred hcCCCCcEEEEEECCcccccccCC--HHHHHHHHH-----------------------HcCCEEEEEECCCCCCHHHHHH
Confidence 223478999999999997643210 011111111 1246899999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
.|.+.+..
T Consensus 168 ~l~~~~~~ 175 (181)
T 2efe_B 168 EIARRLPR 175 (181)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99987654
No 61
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.83 E-value=5e-20 Score=154.60 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch--hHHHhHHHHHHHH--hhcCCCeEEEeec
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM--TFMSNMLYACSIL--YKTRLPLVLAFNK 240 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~--~~~~~~~~~~~~~--~~~~~p~ilv~NK 240 (324)
...+.||||||++++.. .....+ ..+|++++|+|........ ..+..+...+..+ ...++|+++|+||
T Consensus 73 ~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNA------SRKLIL--RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEEECCSCCSCSH------HHHHHT--TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred ceEEEEEeCCChHHHHH------HHHHHH--hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 45789999999887621 111112 3469999999997432111 1222222212222 1257999999999
Q ss_pred cccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 241 ~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~ 315 (324)
+|+.......+ ...+. ......+++++||++|.|++++|+.|.+.+...
T Consensus 145 ~Dl~~~~~~~~----~~~~~----------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 145 RDLPDALPVEM----VRAVV----------------------DPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TTSTTCCCHHH----HHHHH----------------------CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred hhcccccCHHH----HHHHH----------------------HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 99976421111 11111 111223899999999999999999999987654
No 62
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1.3e-20 Score=178.35 Aligned_cols=173 Identities=16% Similarity=0.213 Sum_probs=104.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+|+|++..+.. +...++++ ++.+ ...+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------~~~~~gtT----~d~~--------------~~~~~--- 219 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT--- 219 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------EC-------------C--------------CEEEE---
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------ecCCCCce----eeee--------------EEEEE---
Confidence 356899999999999999999999876531 22222222 1000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-h-hHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-A-SGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~-~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.++.... . ......+.+ .-..+|++++|+|+.++...++. ..
T Consensus 220 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-----~~ 278 (436)
T 2hjg_A 220 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-----RI 278 (436)
T ss_dssp ----------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-----HH
T ss_pred ----------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-----HH
Confidence 124468999999985531100 0 011111111 11236899999999988766552 12
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
+..+...++|+|+|+||+|+.+.... .+..+.+. +. + .+..+.+++++||++|.|+
T Consensus 279 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~~--------------l-----~~~~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 279 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR---DH--------------F-----QFLDYAPILFMSALTKKRI 336 (436)
T ss_dssp HHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH---HH--------------C-----GGGTTSCEEECCTTTCTTG
T ss_pred HHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH---Hh--------------c-----ccCCCCCEEEEecccCCCH
Confidence 23444578999999999999875321 11211111 11 0 1234679999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQEF 315 (324)
Q Consensus 302 ~~l~~~i~~~~~~~ 315 (324)
+++|+.+.+.+...
T Consensus 337 ~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 337 HTLMPAIIKASENH 350 (436)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 63
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=158.84 Aligned_cols=173 Identities=15% Similarity=0.173 Sum_probs=97.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|.+|||||||+++|++..+...+.+++. ..+ ... +...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~------~~~--~~~-----------------------~~~~--- 69 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVF------ENY--VAD-----------------------IEVD--- 69 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------C------CEE--EEE-----------------------EEET---
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCccc------ceE--EEE-----------------------EEEC---
Confidence 357899999999999999999999876543222110 000 000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cch-hHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPM-TFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~-~~~~~~~~~~ 224 (324)
.....+.||||||+.++...... .-..+|++++|+|..... ... ..|...+
T Consensus 70 ---------------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--- 123 (207)
T 2fv8_A 70 ---------------GKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSVDSPDSLENIPEKWVPEV--- 123 (207)
T ss_dssp ---------------TEEEEEEEEECTTCTTCTTTGGG--------GCTTCCEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred ---------------CEEEEEEEEECCCcHHHHHHHHh--------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---
Confidence 12357889999998776211100 113468999999986532 111 1232211
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.. ...++|+++|+||+|+.......+....+. .. .+....+..+.......+++++||++|.||+++
T Consensus 124 ~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el 190 (207)
T 2fv8_A 124 KH-FCPNVPIILVANKKDLRSDEHVRTELARMK-------QE-----PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV 190 (207)
T ss_dssp HH-HSTTCCEEEEEECGGGGGCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred HH-hCCCCCEEEEEEchhhhccccchhhhhhcc-------cC-----CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHH
Confidence 11 123799999999999986543222211110 00 000000110111122348999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
|+.|.+.+.
T Consensus 191 ~~~l~~~i~ 199 (207)
T 2fv8_A 191 FETATRAAL 199 (207)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 64
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.83 E-value=8.3e-21 Score=154.93 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=93.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|++..+...+.+ +. ...+... +...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~---- 48 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-------TK-ADSYRKK-----------------------VVLD---- 48 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT-------TC-CEEEEEE-----------------------EEET----
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCC-------Cc-ceEEEEE-----------------------EEEC----
Confidence 47899999999999999999998765432110 00 0000000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+. .+|++++|+|...... ....| +..+..
T Consensus 49 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~ 103 (168)
T 1u8z_A 49 --------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADF---REQILR 103 (168)
T ss_dssp --------------TEEEEEEEEECCC---CHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHH---HHHHHH
T ss_pred --------------CEEEEEEEEECCCcchhHH------HHHHHhh--cCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence 1235788999999877521 1112222 2589999999865321 11222 211122
Q ss_pred H-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 227 L-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
. ...++|+++|+||+|+.+..... .+....+.+ . .+.+++++||++|.|++++|
T Consensus 104 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 104 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAD---------------------Q--WNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp HHCCTTSCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHH
T ss_pred hcCCCCCcEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHH
Confidence 2 22479999999999997543210 011111110 1 13689999999999999999
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
+.|.+.+.
T Consensus 159 ~~l~~~i~ 166 (168)
T 1u8z_A 159 FDLMREIR 166 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 65
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=1.3e-20 Score=154.04 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=85.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|++|||||||+++|++..+.... ..+.++ .. . .+...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~------------~~~~~~-~~-~------------------~~~~~---- 45 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA------------EAAGHT-YD-R------------------SIVVD---- 45 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------CE-EE-E------------------EEEET----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC------------Cccccc-eE-E------------------EEEEC----
Confidence 468999999999999999999876543211 000010 00 0 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.+|||||+.++.. . ....+ ..+|++++|+|..... .....|...+. ..
T Consensus 46 --------------~~~~~~~i~D~~g~~~~~~--~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~--~~ 101 (166)
T 3q72_A 46 --------------GEEASLMVYDIWEQDGGRW--L----PGHCM--AMGDAYVIVYSVTDKGSFEKASELRVQLR--RA 101 (166)
T ss_dssp --------------TEEEEEEEEECC-----------------------CCEEEEEEETTCHHHHHHHHHHHHHHH--HC
T ss_pred --------------CEEEEEEEEECCCCccchh--h----hhhhh--hhCCEEEEEEECCCHHHHHHHHHHHHHHH--Hh
Confidence 2245788999999877521 1 11111 2357888888876432 11222211110 11
Q ss_pred HhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
....++|+++|+||+|+.+.... .+....+. . ..+.+++++||++|.|++++|
T Consensus 102 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------------------------~-~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACA-------------------------V-VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp C---CCCEEEEEECTTCCSSCCSCHHHHHHHH-------------------------H-HTTCEEEECBGGGTBSHHHHH
T ss_pred cCCCCCCEEEEEeccccccccccCHHHHHHHH-------------------------H-HhCCcEEEeccCCCCCHHHHH
Confidence 12357999999999999764321 11111110 1 124789999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
+.|.+.+..
T Consensus 156 ~~l~~~~~~ 164 (166)
T 3q72_A 156 EGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988754
No 66
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=9.8e-21 Score=157.51 Aligned_cols=165 Identities=14% Similarity=0.189 Sum_probs=98.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+|+|++|||||||+++|++..+...+.. +. ...+... +...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~--- 62 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-------TK-ADSYRKK-----------------------VVLD--- 62 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCT-------TC-CEEEEEE-----------------------EEET---
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCC-------cc-ceEEEEE-----------------------EEEC---
Confidence 457899999999999999999998765432110 00 0000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. .....+. .+|++++|+|...... ....|...+ ..
T Consensus 63 ---------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~ 117 (187)
T 2a9k_A 63 ---------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADFREQI--LR 117 (187)
T ss_dssp ---------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred ---------------CEEEEEEEEECCCCcccHH------HHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHH--HH
Confidence 1134788999999877521 1112222 2589999999865321 112222111 11
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+++|+||+|+.+..... .+....+.+ . .+.+++++||++|.|++++|
T Consensus 118 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 118 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q--WNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp HHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHH
T ss_pred hcCCCCCCEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHH
Confidence 2222479999999999997542210 011111111 1 14689999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 306 KAVEESAQEFM 316 (324)
Q Consensus 306 ~~i~~~~~~~~ 316 (324)
..|.+.+....
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886543
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=157.96 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=99.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+++|++..+......+ . ...+.. . .+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~-~~~~~~----~------------------~~~~~--- 53 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVST-------V-GIDFKV----K------------------TIYRN--- 53 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCC-------C-SEEEEE----E------------------EEEET---
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc-------c-ceeEEE----E------------------EEEEC---
Confidence 4578999999999999999999988765322110 0 000000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+...... .....++..+...
T Consensus 54 ---------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~ 109 (203)
T 1zbd_A 54 ---------------DKRIKLQIWDTAGLERYRT------ITTAYY--RGAMGFILMYDITNEESF-NAVQDWSTQIKTY 109 (203)
T ss_dssp ---------------TEEEEEEEEEECCSGGGHH------HHHTTG--GGCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred ---------------CeEEEEEEEECCCchhhcc------hHHHhh--cCCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence 1245789999999876521 111111 346899999998653211 1111112222222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+.+ . + +.+++++||++|.|++++|+.
T Consensus 110 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 110 SWDNAQVLLVGNKCDMEDERVVS--SERGRQLAD---------------------H-L-GFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp SCSSCEEEEEEECTTCTTSCCSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSSHHHHHH
T ss_pred cCCCCCEEEEEECcccCcccccC--HHHHHHHHH---------------------H-C-CCeEEEEECCCCCCHHHHHHH
Confidence 23579999999999997643210 011111111 1 1 368999999999999999999
Q ss_pred HHHHHHHH
Q 020549 308 VEESAQEF 315 (324)
Q Consensus 308 i~~~~~~~ 315 (324)
|.+.+.+.
T Consensus 165 l~~~i~~~ 172 (203)
T 1zbd_A 165 LVDVICEK 172 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 68
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.83 E-value=9.9e-21 Score=160.15 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=89.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|++|||||||+++|++..+.. + .++.... .+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~-------~~t~~~~--------------------------~~~~~--- 65 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-H-------VPTLHPT--------------------------SEELT--- 65 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--------------CCCCCS--------------------------CEEEE---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-c-------CCCCCce--------------------------eEEEE---
Confidence 356789999999999999999998865431 0 0111000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
..+..+.+|||||++++.. ... .++ ..+|++++|+|+..... ....|...+ +
T Consensus 66 ----------------~~~~~l~i~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~~--~ 119 (198)
T 1f6b_A 66 ----------------IAGMTFTTFDLGGHIQARR--VWK----NYL--PAINGIVFLVDCADHERLLESKEELDSL--M 119 (198)
T ss_dssp ----------------ETTEEEEEEEECC----CC--GGG----GGG--GGCSEEEEEEETTCGGGHHHHHHHHHHH--H
T ss_pred ----------------ECCEEEEEEECCCcHhhHH--HHH----HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHH--H
Confidence 1246789999999877521 110 111 23689999999875421 112221111 0
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccch-hhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYT-STLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
......++|+++|+||+|+.......+ +.............. ..+.+ ......++++|||++|.||++
T Consensus 120 ~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 120 TDETIANVPILILGNKIDRPEAISEER----LREMFGLYGQTTGKGSVSLKE-------LNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp TCGGGTTSCEEEEEECTTSTTCCCHHH----HHHHHTCTTTCCCSSCCCTTT-------CCSCCEEEEECBTTTTBSHHH
T ss_pred hCcccCCCcEEEEEECCCccccCCHHH----HHHHhCccccccccccccccc-------ccCceEEEEEEECCCCCCHHH
Confidence 111235799999999999975211111 111110000000000 00000 001246799999999999999
Q ss_pred HHHHHHHH
Q 020549 304 YFKAVEES 311 (324)
Q Consensus 304 l~~~i~~~ 311 (324)
+|+.|.+.
T Consensus 189 l~~~l~~~ 196 (198)
T 1f6b_A 189 GFRWMAQY 196 (198)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99998764
No 69
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=1.6e-20 Score=153.87 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=88.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+........ +....... +...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~~----- 47 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN-----SEDTYERR-------------------------IMVD----- 47 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-----------------CEEEEE-------------------------EEET-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCC-----cCCeeeEE-------------------------EEEC-----
Confidence 679999999999999999998765543211110 00000000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.++.. ..... .++ .+|++++|+|.... +.....|...+ ....
T Consensus 48 -------------~~~~~~~i~D~~g~~~~~~--~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~ 105 (169)
T 3q85_A 48 -------------KEEVTLIVYDIWEQGDAGG--WLQDH---CLQ--TGDAFLIVFSVTDRRSFSKVPETLLRL--RAGR 105 (169)
T ss_dssp -------------TEEEEEEEECCCCC----------CH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHH--HHHS
T ss_pred -------------CeEEEEEEEECCCccccch--hhhhh---hhc--cCCEEEEEEECCChHHHHHHHHHHHHH--Hhcc
Confidence 2245788999999877521 11110 111 25788888887652 22222232111 1111
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+.+..... .+....+. .. .+.+++++||++|.|++++|+.
T Consensus 106 ~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 106 PHHDLPVILVGNKSDLARSREVS--LEEGRHLA----------------------GT-LSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp TTSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHH
T ss_pred cCCCCCEEEEeeCcchhhcccCC--HHHHHHHH----------------------HH-cCCcEEEecCccCCCHHHHHHH
Confidence 12379999999999997542210 01111111 11 2468999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+..
T Consensus 161 l~~~i~~ 167 (169)
T 3q85_A 161 AVRQIRL 167 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987753
No 70
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.83 E-value=1.7e-20 Score=157.65 Aligned_cols=167 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|++|||||||+++|++..+... .++..... +.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~--------~~t~~~~~--------------------------~~~~--- 63 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL--------QPTWHPTS--------------------------EELA--- 63 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC--------CCCCSCEE--------------------------EEEE---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc--------ccCCCCCe--------------------------EEEE---
Confidence 4557899999999999999999998765420 01110000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
..+..+.+|||||+.++.. ... ..+ ..+|++++|+|+..... ....|...+ .
T Consensus 64 ----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~--~ 117 (190)
T 1m2o_B 64 ----------------IGNIKFTTFDLGGHIQARR--LWK----DYF--PEVNGIVFLVDAADPERFDEARVELDAL--F 117 (190)
T ss_dssp ----------------ETTEEEEEEECCCSGGGTT--SGG----GGC--TTCCEEEEEEETTCGGGHHHHHHHHHHH--H
T ss_pred ----------------ECCEEEEEEECCCCHHHHH--HHH----HHH--hcCCEEEEEEECCChHHHHHHHHHHHHH--H
Confidence 1246789999999877521 110 011 24699999999876432 112221111 1
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......+.|+++|+||+|+.......+..+.+. ...... .+. + ......+++++||++|.|++++
T Consensus 118 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-------~~~~~~------~~~-~-~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 118 NIAELKDVPFVILGNKIDAPNAVSEAELRSALG-------LLNTTG------SQR-I-EGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp TCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT-------CSSCCC----------C-CSSCCEEEEECBTTTTBSHHHH
T ss_pred cchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC-------Cccccc------ccc-c-cccceEEEEEeECCcCCCHHHH
Confidence 111235799999999999976221111111110 000000 000 0 0012467999999999999999
Q ss_pred HHHHHHH
Q 020549 305 FKAVEES 311 (324)
Q Consensus 305 ~~~i~~~ 311 (324)
|+.|.+.
T Consensus 183 ~~~l~~~ 189 (190)
T 1m2o_B 183 FQWLSQY 189 (190)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9998753
No 71
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=8.1e-21 Score=159.36 Aligned_cols=166 Identities=18% Similarity=0.231 Sum_probs=101.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+|+|++|||||||+++|++..+......+ . ...+.. .. +...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-------~-~~~~~~----~~------------------~~~~--- 60 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT-------I-GVDFKV----KT------------------ISVD--- 60 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-------C-SEEEEE----EE------------------EEET---
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc-------c-ceEEEE----EE------------------EEEC---
Confidence 4578999999999999999999988665322110 0 000000 00 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. . ....+ ..+|++++|+|+..... ....| + .
T Consensus 61 ---------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~---~ 111 (195)
T 1x3s_A 61 ---------------GNKAKLAIWDTAGQERFRT--L----TPSYY--RGAQGVILVYDVTRRDTFVKLDNW---L---N 111 (195)
T ss_dssp ---------------TEEEEEEEEEECSSGGGCC--S----HHHHH--TTCCEEEEEEETTCHHHHHTHHHH---H---H
T ss_pred ---------------CeEEEEEEEeCCCchhhhh--h----hHHHh--ccCCEEEEEEECcCHHHHHHHHHH---H---H
Confidence 1245789999999877521 1 11122 34689999999865321 11222 1 2
Q ss_pred HHh----hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 226 ILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 226 ~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
.+. ..++|+++|+||+|+.......+. ...+.+ . ...+++++||++|.|+
T Consensus 112 ~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 112 ELETYCTRNDIVNMLVGNKIDKENREVDRNE---GLKFAR---------------------K--HSMLFIEASAKTCDGV 165 (195)
T ss_dssp HHTTCCSCSCCEEEEEEECTTSSSCCSCHHH---HHHHHH---------------------H--TTCEEEECCTTTCTTH
T ss_pred HHHHhcCcCCCcEEEEEECCcCcccccCHHH---HHHHHH---------------------H--cCCEEEEecCCCCCCH
Confidence 222 246899999999999543211111 111110 1 2468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 020549 302 EAYFKAVEESAQEFMETYKY 321 (324)
Q Consensus 302 ~~l~~~i~~~~~~~~~~~~~ 321 (324)
+++|+.|.+.+...+..|..
T Consensus 166 ~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHHHHhhhhhhcc
Confidence 99999999999876665543
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=2.7e-20 Score=158.55 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=98.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...... +... .+.. . .+...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~-~~~~----~------------------~~~~~-- 65 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT-------TIGI-DFKI----K------------------TVDIN-- 65 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSC-------CCSC-CEEE----E------------------EEEET--
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCC-------cccc-eEEE----E------------------EEEEC--
Confidence 4568999999999999999999998765432111 0000 0000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++. .... ..+ ..+|++++|+|...... ....| +..+
T Consensus 66 ----------------~~~~~~~l~Dt~G~~~~~--~~~~----~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~~~i 118 (213)
T 3cph_A 66 ----------------GKKVKLQLWDTAGQERFR--TITT----AYY--RGAMGIILVYDVTDERTFTNIKQW---FKTV 118 (213)
T ss_dssp ----------------TEEEEEEEECCTTGGGGT--CCCH----HHH--TTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred ----------------CEEEEEEEEeCCCcHHHH--HHHH----HHh--ccCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence 113578999999987752 1111 111 34689999999865321 11223 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++|+||+|+.......+.. ..+.. . . +.+++++||++|.||+++
T Consensus 119 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 119 NEHANDEAQLLLVGNKSDMETRVVTADQG---EALAK---------------------E-L-GIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp HHHTTTCSEEEEEEECTTCSSCCSCHHHH---HHHHH---------------------H-H-TCCEEECBTTTTBSSHHH
T ss_pred HHhcCCCCCEEEEEECCCCcccccCHHHH---HHHHH---------------------H-c-CCEEEEEeCCCCCCHHHH
Confidence 23333478999999999995432111111 11111 1 1 368999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|..|.+.+.+.
T Consensus 173 ~~~l~~~~~~~ 183 (213)
T 3cph_A 173 FFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 73
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.83 E-value=4e-20 Score=154.07 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=95.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+++|++..+.. ..++ .. .... . +.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t-------~g-~~~~-~-----------------------~~---- 56 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPT-------QG-FNIK-S-----------------------VQ---- 56 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEE-------TT-EEEE-E-----------------------EE----
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCc-------CC-eEEE-E-----------------------EE----
Confidence 356899999999999999999999874321 1100 00 0000 0 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
..+..+.+|||||++++.. ....++ ..+|++++|+|...... ....|.. ..+
T Consensus 57 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~--~~~ 110 (181)
T 1fzq_A 57 ----------------SQGFKLNVWDIGGQRKIRP------YWRSYF--ENTDILIYVIDSADRKRFEETGQELT--ELL 110 (181)
T ss_dssp ----------------ETTEEEEEEECSSCGGGHH------HHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHH--HHT
T ss_pred ----------------ECCEEEEEEECCCCHHHHH------HHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHH--HHH
Confidence 1245788999999877521 111222 34699999999865421 1111211 001
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~ 302 (324)
......+.|+++|+||+|+.......+..+.+. . .. ....++++|||++|.||+
T Consensus 111 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 111 EEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN---------------------L---HTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp TCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHH
T ss_pred hChhhcCCCEEEEEECcCcccCCCHHHHHHHhC---------------------c---hhccCCceEEEEccCCCCCCHH
Confidence 111235799999999999986532211111110 0 00 123579999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQE 314 (324)
Q Consensus 303 ~l~~~i~~~~~~ 314 (324)
++|+.|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 74
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=1.3e-19 Score=152.91 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=98.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+++|.+|||||||++++.+..... . +. ...++. . .....
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~---------~~-~~~~~~----~------------------~~~~~- 62 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-E---------TL-FLESTN----K------------------IYKDD- 62 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-G---------GG-GCCCCC----S------------------CEEEE-
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-c---------ee-eecccc----c------------------eeeee-
Confidence 4567899999999999999999988753221 0 00 000000 0 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYAC 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~ 224 (324)
+.. .....+.||||||++++.. ... ....++ ..+|++++|+|....+... ..|...+..+
T Consensus 63 --~~~------------~~~~~l~i~Dt~G~~~~~~--~~~-~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~ 123 (196)
T 3llu_A 63 --ISN------------SSFVNFQIWDFPGQMDFFD--PTF-DYEMIF--RGTGALIYVIDAQDDYMEALTRLHITVSKA 123 (196)
T ss_dssp --ECC------------TTSCCEEEEECCSSCCTTC--TTC-CHHHHH--HTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred --ccC------------CCeeEEEEEECCCCHHHHh--hhh-hccccc--ccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence 000 2357899999999988621 110 001122 2368999999998763221 3333333221
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~ 302 (324)
. ....+.|+++|+||+|+.+.+...+....+.... ...+++ .+ ..+++++++||++ .||+
T Consensus 124 ~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~---------~~~~~~-------~~~~~~~~~~~e~Sa~~-~~v~ 185 (196)
T 3llu_A 124 Y-KVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA---------NDDLAD-------AGLEKLHLSFYLTSIYD-HSIF 185 (196)
T ss_dssp H-HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH---------HHHHHH-------TTCTTSCEEEEEECTTS-THHH
T ss_pred H-hcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH---------HHHHHH-------hhhhcCCcceEEEEech-hhHH
Confidence 1 1345899999999999988653322111111000 000110 01 1246899999999 9999
Q ss_pred HHHHHHHHHH
Q 020549 303 AYFKAVEESA 312 (324)
Q Consensus 303 ~l~~~i~~~~ 312 (324)
++|..|.+.+
T Consensus 186 ~~f~~l~~~l 195 (196)
T 3llu_A 186 EAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 75
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.83 E-value=1.5e-20 Score=156.91 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=97.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..+|+++|++|||||||+++|++.. ..... ++.. .... .+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~-------~t~~-~~~~------------------------~~~---- 58 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTIS-------PTLG-FNIK------------------------TLE---- 58 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCC-------CCSS-EEEE------------------------EEE----
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCccc-------ccCc-cceE------------------------EEE----
Confidence 467899999999999999999999875 21111 1110 0000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~ 225 (324)
..+..+.||||||++++.. ... . .-..+|++++|+|+.....-.. ....+.. +.
T Consensus 59 ----------------~~~~~~~~~Dt~G~~~~~~--~~~----~--~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~ 113 (186)
T 1ksh_A 59 ----------------HRGFKLNIWDVGGQKSLRS--YWR----N--YFESTDGLIWVVDSADRQRMQD-CQRELQSLLV 113 (186)
T ss_dssp ----------------ETTEEEEEEEECCSHHHHT--TGG----G--GCTTCSEEEEEEETTCGGGHHH-HHHHHHHHHT
T ss_pred ----------------ECCEEEEEEECCCCHhHHH--HHH----H--HhcCCCEEEEEEECcCHHHHHH-HHHHHHHHHh
Confidence 1256789999999876521 110 0 0134699999999876432111 1111111 11
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~ 303 (324)
.....+.|+++|+||+|+.+.....+..+.+. . .. ....+++++||++|.|+++
T Consensus 114 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 114 EERLAGATLLIFANKQDLPGALSCNAIQEALE---------------------L---DSIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHHH
T ss_pred ChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC---------------------h---hhccCCceEEEEeeCCCCCCHHH
Confidence 11125799999999999986532211111110 0 00 1245899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEF 315 (324)
Q Consensus 304 l~~~i~~~~~~~ 315 (324)
+++.|.+.+.+.
T Consensus 170 l~~~l~~~i~~~ 181 (186)
T 1ksh_A 170 GIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=2.1e-20 Score=152.77 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=96.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|++|||||||+++|++..+...+.++ .. ..+.. . .+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t-------~~-~~~~~----~------------------~~~~~--- 50 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT-------IG-VDFLE----R------------------QIQVN--- 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCC-------CS-SSEEE----E------------------EEEET---
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------eE-EEEEE----E------------------EEEEC---
Confidence 4578999999999999999999987654321110 00 00000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. ... ..+ ..+|++++|+|..... .....|...+ .
T Consensus 51 ---------------~~~~~~~l~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~ 104 (168)
T 1z2a_A 51 ---------------DEDVRLMLWDTAGQEEFDA--ITK----AYY--RGAQACVLVFSTTDRESFEAISSWREKV---V 104 (168)
T ss_dssp ---------------TEEEEEEEECCTTGGGTTC--CCH----HHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH---H
T ss_pred ---------------CEEEEEEEEcCCCcHhHHH--HHH----HHh--cCCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence 1245789999999877521 111 111 3468999999986632 1122232211 1
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
... .+.|+++|+||+|+.+..... .+....+.+ . .+.+++++||++|.|+++++
T Consensus 105 ~~~-~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 105 AEV-GDIPTALVQNKIDLLDDSCIK--NEEAEGLAK---------------------R--LKLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp HHH-CSCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H--HTCEEEECBTTTTBSSHHHH
T ss_pred HhC-CCCCEEEEEECcccCcccccC--HHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHHH
Confidence 111 579999999999997543210 011111111 1 14689999999999999999
Q ss_pred HHHHHHHH
Q 020549 306 KAVEESAQ 313 (324)
Q Consensus 306 ~~i~~~~~ 313 (324)
+.|.+.+.
T Consensus 159 ~~l~~~~~ 166 (168)
T 1z2a_A 159 KYLAEKHL 166 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 77
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=1.5e-20 Score=167.31 Aligned_cols=162 Identities=23% Similarity=0.268 Sum_probs=101.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|.+|||||||+|+|++..+.. +..++++..... +.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v-------~~~~g~t~~~~~------------------------~~~~----- 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRV-------GNWAGVTVERKE------------------------GQFS----- 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEE-------EECTTSSSEEEE------------------------EEEE-----
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCccc-------CCCCCeeEEEEE------------------------EEEE-----
Confidence 4789999999999999999999875321 111222111100 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh---hhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+..+.||||||+.++... ......+.+.+ ....+|++++|+|+... ... +...
T Consensus 47 --------------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----~~~---~~~~ 105 (274)
T 3i8s_A 47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----ERN---LYLT 105 (274)
T ss_dssp --------------CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----HHH---HHHH
T ss_pred --------------eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----HHH---HHHH
Confidence 12467899999999886321 12223333333 33568999999998652 111 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+...++|+++|+||+|+....... .....+.+ . -+.+++++||++|.|+++|
T Consensus 106 ~~l~~~~~p~ivv~NK~Dl~~~~~~~---~~~~~l~~----------------------~-lg~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 106 LQLLELGIPCIVALNMLDIAEKQNIR---IEIDALSA----------------------R-LGCPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp HHHHHHTCCEEEEEECHHHHHHTTEE---ECHHHHHH----------------------H-HTSCEEECCCGGGHHHHHH
T ss_pred HHHHhcCCCEEEEEECccchhhhhHH---HHHHHHHH----------------------h-cCCCEEEEEcCCCCCHHHH
Confidence 34445689999999999986543211 11111111 1 1479999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
++.|.+.++
T Consensus 160 ~~~i~~~~~ 168 (274)
T 3i8s_A 160 KLAIDRYKA 168 (274)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHHHh
Confidence 999987654
No 78
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.83 E-value=1.1e-20 Score=154.71 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|++|||||||+++|++..+...... .. +...... .+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-------~~-----~~~~~~~------------------~~~~~--- 51 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQES-------TI-----GAAFLTQ------------------TVCLD--- 51 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC-------CS-----SEEEEEE------------------EEEET---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------cc-----ceEEEEE------------------EEEEC---
Confidence 457899999999999999999998765432110 00 0000000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. . ....+ ..+|++++|+|..... .....| +..+.
T Consensus 52 ---------------~~~~~~~~~D~~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~ 105 (170)
T 1r2q_A 52 ---------------DTTVKFEIWDTAGQERYHS--L----APMYY--RGAQAAIVVYDITNEESFARAKNW---VKELQ 105 (170)
T ss_dssp ---------------TEEEEEEEEEECCSGGGGG--G----HHHHH--TTCSEEEEEEETTCHHHHHHHHHH---HHHHH
T ss_pred ---------------CEEEEEEEEeCCCcHHhhh--h----hHHhc--cCCCEEEEEEECCCHHHHHHHHHH---HHHHH
Confidence 1245788999999877521 1 11112 3468999999986542 111222 22222
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+++|+||+|+....... .+....+.. ....+++++||++|.|+++++
T Consensus 106 ~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 106 RQASPNIVIALSGNKADLANKRAVD--FQEAQSYAD-----------------------DNSLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp HHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHH
T ss_pred HhcCCCCcEEEEEECccCccccccC--HHHHHHHHH-----------------------HcCCeEEEEeCCCCCCHHHHH
Confidence 2233578999999999997532110 011111110 124689999999999999999
Q ss_pred HHHHHHH
Q 020549 306 KAVEESA 312 (324)
Q Consensus 306 ~~i~~~~ 312 (324)
+.|.+.+
T Consensus 161 ~~i~~~~ 167 (170)
T 1r2q_A 161 MAIAKKL 167 (170)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 9998765
No 79
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.83 E-value=2.2e-20 Score=155.62 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=100.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+|+|++|||||||+++|++..+......+ . +..+... .+...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~-----~~~~~~~------------------~~~~~-- 55 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT-------I-----GVEFGSK------------------IINVG-- 55 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC-------S-----EEEEEEE------------------EEEET--
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-------c-----ceEEEEE------------------EEEEC--
Confidence 34588999999999999999999988765422110 0 0000000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. ..... -..+|++++|+|...... ....| +..+
T Consensus 56 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~ 108 (186)
T 2bme_A 56 ----------------GKYVKLQIWDTAGQERFRS------VTRSY--YRGAAGALLVYDITSRETYNALTNW---LTDA 108 (186)
T ss_dssp ----------------TEEEEEEEEEECCSGGGHH------HHHTT--STTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred ----------------CEEEEEEEEeCCCcHHHHH------HHHHH--HhcCCEEEEEEECcCHHHHHHHHHH---HHHH
Confidence 1135788999999877511 11111 134699999999876321 11223 2222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......+.|+++|+||+|+....... ..+...+. . ..+.+++++||++|.|++++
T Consensus 109 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 109 RMLASQNIVIILCGNKKDLDADREVT--FLEASRFA----------------------Q-ENELMFLETSALTGENVEEA 163 (186)
T ss_dssp HHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHH
T ss_pred HHhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCEEEEecCCCCCCHHHH
Confidence 33344679999999999996532210 01111111 0 12468999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFM 316 (324)
Q Consensus 305 ~~~i~~~~~~~~ 316 (324)
|+.|.+.+....
T Consensus 164 ~~~l~~~~~~~~ 175 (186)
T 2bme_A 164 FVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 80
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=1.1e-20 Score=156.31 Aligned_cols=165 Identities=18% Similarity=0.134 Sum_probs=97.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+..+|+++|++|||||||+++|++..+...+.+ +.....+... +...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~-------t~~~~~~~~~-----------------------~~~~--- 51 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQ-------TIGLDFFLRR-----------------------ITLP--- 51 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHH-------TTTSSEEEEE-----------------------EEET---
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCC-------ceeEEEEEEE-----------------------EEeC---
Confidence 458899999999999999999998765422110 0000000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
. .....+.||||||+.++.. . ....+ ..+|++++|+|...... ....|...+ .
T Consensus 52 --~------------~~~~~~~~~Dt~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~ 106 (178)
T 2hxs_A 52 --G------------NLNVTLQIWDIGGQTIGGK--M----LDKYI--YGAQGVLLVYDITNYQSFENLEDWYTVV---K 106 (178)
T ss_dssp --T------------TEEEEEEEEECTTCCTTCT--T----HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHH---H
T ss_pred --C------------CCEEEEEEEECCCCccccc--h----hhHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence 0 0135789999999887521 1 11122 34689999999865321 222332222 2
Q ss_pred HHhh--cCCC-eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 226 ILYK--TRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 226 ~~~~--~~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
.... .+.| +++|+||+|+.+..... .+....+.+ . .+.+++++||++|.||+
T Consensus 107 ~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 107 KVSEESETQPLVALVGNKIDLEHMRTIK--PEKHLRFCQ---------------------E--NGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp HHHHHHTCCCEEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHH
T ss_pred HHhcccCCCCeEEEEEEccccccccccC--HHHHHHHHH---------------------H--cCCcEEEEeCCCCCCHH
Confidence 2111 2566 78999999997532110 011111111 1 13689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
++|..|.+.+...
T Consensus 162 ~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 162 LCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887543
No 81
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=2.1e-20 Score=159.71 Aligned_cols=188 Identities=19% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+++|++|||||||+++|++..+...+.+ +....+. + ...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~--------~~~~~~~--~-----------------------~~~-- 49 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS--------ITDSSAI--Y-----------------------KVN-- 49 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC--------CSCEEEE--E-----------------------ECS--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC--------cceeeEE--E-----------------------Eec--
Confidence 3568899999999999999999998876532210 0000000 0 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~ 225 (324)
. .....+.||||||+.++. . .+...+ ...+|++++|+|..............+. .+.
T Consensus 50 ---~------------~~~~~~~i~Dt~G~~~~~--~----~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 107 (214)
T 2fh5_B 50 ---N------------NRGNSLTLIDLPGHESLR--F----QLLDRF-KSSARAVVFVVDSAAFQREVKDVAEFLYQVLI 107 (214)
T ss_dssp ---S------------TTCCEEEEEECCCCHHHH--H----HHHHHH-GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred ---C------------CCccEEEEEECCCChhHH--H----HHHHHH-HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHh
Confidence 0 114678999999987752 1 111111 1235899999998652111111111111 111
Q ss_pred H--HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCc------cchhhHHH----HHHHh--HHHHhccCcee
Q 020549 226 I--LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH------SYTSTLTN----SLSLA--LDEFYKNLKSV 291 (324)
Q Consensus 226 ~--~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~l~~----~~~~~--~~~~~~~~~iv 291 (324)
. ....++|+++|+||+|+..........+.+......+...+ .....+.+ ..+.. ...+...++++
T Consensus 108 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2fh5_B 108 DSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 187 (214)
T ss_dssp HHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEE
T ss_pred hhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEE
Confidence 1 12346899999999999875443333333332222110000 00000000 00000 00000156799
Q ss_pred eeccccC------CChHHHHHHHHHH
Q 020549 292 GVSSVSG------AGIEAYFKAVEES 311 (324)
Q Consensus 292 ~vSA~~g------~gv~~l~~~i~~~ 311 (324)
+|||++| .||+++|+.|.+.
T Consensus 188 e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 188 ECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ECBCC-------CCBCHHHHHHHHHH
T ss_pred EeeccCCCccccccChHHHHHHHHHh
Confidence 9999999 9999999999875
No 82
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=3.1e-20 Score=176.81 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=104.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|.+|+|||||+|+|++..... +...++++ ++.. ...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------~~~~~gtt----~~~~--------------~~~~~--- 239 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT--- 239 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECC----------CTT--------------SEEEE---
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc------------cCCCCCeE----EEEE--------------EEEEE---
Confidence 457899999999999999999999764321 22222222 1000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh---hhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
..+..+.||||||+.+.... .... ...+.+ .-..+|++++|+|+.+++..++.+
T Consensus 240 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad~~llviD~~~~~~~~~~~----- 297 (456)
T 4dcu_A 240 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKY-SVLRALKAIDRSEVVAVVLDGEEGIIEQDKR----- 297 (456)
T ss_dssp ----------------ETTEEEEETTGGGTTTBTTBCCCCSHH-HHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----
T ss_pred ----------------ECCceEEEEECCCCCcCcccchHHHHH-HHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----
Confidence 12457899999996432100 0111 111111 113469999999999988766532
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.+..+...++|+|+|+||+|+.+.... .+..+.+.. .+ .+..+.+++++||++|.|
T Consensus 298 ~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 298 IAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRD---HF-------------------QFLDYAPILFMSALTKKR 355 (456)
T ss_dssp HHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHH---HC-------------------GGGTTSCEEECCTTTCTT
T ss_pred HHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHH---hc-------------------ccCCCCCEEEEcCCCCcC
Confidence 123344578999999999999864321 112111110 00 223468999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQEF 315 (324)
Q Consensus 301 v~~l~~~i~~~~~~~ 315 (324)
|+++|+.|.+.+...
T Consensus 356 v~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 356 IHTLMPAIIKASENH 370 (456)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 83
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=2.8e-20 Score=157.96 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=99.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+++|++..+...+.. +.. ..+.. . .+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~~-~~~~~----~------------------~~~~~--- 53 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYIS-------TIG-VDFKI----K------------------TVELD--- 53 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCC-------SSC-CCEEE----E------------------EEEET---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccc-ceeEE----E------------------EEEEC---
Confidence 457899999999999999999998866532211 000 00000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .... . -..+|++++|+|+...... .....++..+...
T Consensus 54 ---------------~~~~~~~l~Dt~G~~~~~~--~~~~----~--~~~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~ 109 (206)
T 2bcg_Y 54 ---------------GKTVKLQIWDTAGQERFRT--ITSS----Y--YRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRY 109 (206)
T ss_dssp ---------------TEEEEEEEECCTTTTTTTC--CCGG----G--GTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred ---------------CEEEEEEEEeCCChHHHHH--HHHH----h--ccCCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence 1235789999999877521 1110 1 1346899999998763211 1111122222333
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...+.|+++|+||+|+....... .+....+. . ..+.+++++||++|.||+++|..
T Consensus 110 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 110 ATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFA----------------------D-ANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp SCTTCEEEEEEECTTCTTTCCSC--HHHHHHHH----------------------H-HTTCCEEECCTTTCTTHHHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------H-HcCCeEEEEeCCCCCCHHHHHHH
Confidence 34578999999999997643210 01111111 1 12468999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+.+
T Consensus 165 l~~~i~~ 171 (206)
T 2bcg_Y 165 MARQIKE 171 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 84
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=157.70 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+......++ +.... .. .+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-----~~~~~--~~-----------------------~~~~~-- 70 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI-----GVEFG--SR-----------------------VVNVG-- 70 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-----------------CCEE--EE-----------------------EEEET--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc-----cceeE--EE-----------------------EEEEC--
Confidence 346889999999999999999999876654322111 00000 00 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. ... ..+ ..+|++++|+|........ .....+..+..
T Consensus 71 ----------------~~~~~l~l~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~ 125 (200)
T 2o52_A 71 ----------------GKTVKLQIWDTAGQERFRS--VTR----SYY--RGAAGALLVYDITSRETYN-SLAAWLTDART 125 (200)
T ss_dssp ----------------TEEEEEEEECCTTHHHHSC--CCH----HHH--TTCSEEEEEEETTCHHHHH-THHHHHHHHHH
T ss_pred ----------------CeeeEEEEEcCCCcHhHHH--HHH----HHh--ccCCEEEEEEECcCHHHHH-HHHHHHHHHHH
Confidence 1135789999999766421 111 111 3468999999986532111 11111222223
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....++|+++|+||+|+....... ..+...+. . ..+.+++++||++|.||+++|.
T Consensus 126 ~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 126 LASPNIVVILCGNKKDLDPEREVT--FLEASRFA----------------------Q-ENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp HTCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEEECTTTCTTHHHHHH
T ss_pred hcCCCCcEEEEEECCCcccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHH
Confidence 334579999999999996532210 01111111 0 1246899999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 307 AVEESAQEFM 316 (324)
Q Consensus 307 ~i~~~~~~~~ 316 (324)
.|.+.+....
T Consensus 181 ~l~~~i~~~~ 190 (200)
T 2o52_A 181 KCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 85
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.83 E-value=2e-19 Score=168.52 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=77.3
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeecccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl 243 (324)
..+.||||||++++.. .+...+ ..+|++++|+|+.++. ..+. ...+ ..+...+ .|+|+|+||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~------~~~~~~--~~~D~~ilVvda~~~~~~~qt--~~~~---~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMA------TMLSGA--ALMDGAILVVAANEPFPQPQT--REHF---VALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHH------HHHHHH--TTCSEEEEEEETTSCSSCHHH--HHHH---HHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHH------HHHHHH--hhCCEEEEEEECCCCCCcHHH--HHHH---HHHHHcCCCCEEEEEECccc
Confidence 5789999999877622 222222 4579999999999876 4333 1112 2223333 589999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.+.+......+++..+... ......+++++||++|.|+++|++.|.+.++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKG--------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHh--------------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 9876544444333321110 1123578999999999999999999998765
No 86
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=1.1e-20 Score=156.02 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=96.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+|+|++|||||||+++|++..+......+ .. ..+.. . .+...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-------~~-~~~~~----~------------------~~~~~---- 59 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT-------IG-IDFLS----K------------------TMYLE---- 59 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-------CS-EEEEE----E------------------EEEET----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-------ee-eEEEE----E------------------EEEEC----
Confidence 478999999999999999999987665322110 00 00000 0 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. ... ..+ ..+|++++|+|+.... .....| +..+..
T Consensus 60 --------------~~~~~~~~~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~ 114 (179)
T 2y8e_A 60 --------------DRTVRLQLWDTAGQERFRS--LIP----SYI--RDSTVAVVVYDITNTNSFHQTSKW---IDDVRT 114 (179)
T ss_dssp --------------TEEEEEEEEEECCSGGGGG--GSH----HHH--HTCSEEEEEEETTCHHHHHTHHHH---HHHHHH
T ss_pred --------------CeEEEEEEEECCCcHHHHH--HHH----HHh--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence 1134789999999877521 111 112 2368999999986532 222223 222223
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....++|+++|+||+|+.+..... ......+.. . .+.+++++||++|.|++++++
T Consensus 115 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 115 ERGSDVIIMLVGNKTDLSDKRQVS--TEEGERKAK---------------------E--LNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp HHTTSSEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEEBTTTTBSHHHHHH
T ss_pred hcCCCCcEEEEEECCcccccCcCC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHH
Confidence 334579999999999997543210 001111110 1 146899999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.|.+.++
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9987653
No 87
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=159.95 Aligned_cols=165 Identities=14% Similarity=0.185 Sum_probs=98.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...+.+ +. ...+... +...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~-- 58 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-------TK-ADSYRKK-----------------------VVLD-- 58 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCT-------TC-CEEEEEE-----------------------EEET--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------cc-ceEEEEE-----------------------EEEC--
Confidence 3457899999999999999999998765432110 00 0000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. .....+. .+|++++|+|..... .....|...+ .
T Consensus 59 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--~ 112 (206)
T 2bov_A 59 ----------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADFREQI--L 112 (206)
T ss_dssp ----------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--H
T ss_pred ----------------CEEEEEEEEcCCChhhhHH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHH--H
Confidence 1134788999999877521 1111222 258889999886532 1122232211 1
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++|+||+|+.+..... .+....+.+ . .+.+++++||++|.||+++
T Consensus 113 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 113 RVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q--WNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp HHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHHHH
T ss_pred HhcCCCCCCEEEEEeccCcccccccc--HHHHHHHHH---------------------H--hCCeEEEEeCCCCCCHHHH
Confidence 11223479999999999997643210 011111111 1 1368999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|..|.+.+...
T Consensus 168 ~~~l~~~i~~~ 178 (206)
T 2bov_A 168 FFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988654
No 88
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=6.5e-21 Score=158.54 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+++|++..+.....+ ++. ..+.. . .+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~-------t~~-~~~~~----~------------------~~~~~--- 53 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFIS-------TIG-IDFKI----R------------------TIELD--- 53 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHH-------HHC-EEEEE----E------------------EEEET---
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------ccc-ceeEE----E------------------EEEEC---
Confidence 457899999999999999999997755421110 000 00000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. ... .. -..+|++++|+|....... .....++..+...
T Consensus 54 ---------------~~~~~~~l~Dt~G~~~~~~--~~~----~~--~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~ 109 (183)
T 2fu5_C 54 ---------------GKRIKLQIWDTAGQERFRT--ITT----AY--YRGAMGIMLVYDITNEKSF-DNIRNWIRNIEEH 109 (183)
T ss_dssp ---------------TEEEEEEEEEC-----------CC----TT--TTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred ---------------CEEEEEEEEcCCCChhhhh--hHH----HH--HhcCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence 1135789999999876521 000 00 1346899999998763211 1111112222222
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+....... .+....+.+ . .+.+++++||++|.||+++|..
T Consensus 110 ~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 110 ASADVEKMILGNKCDVNDKRQVS--KERGEKLAL---------------------D--YGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp SCTTCEEEEEEEC--CCSCCCSC--HHHHHHHHH---------------------H--HTCEEEECCC---CCHHHHHHH
T ss_pred cCCCCCEEEEEECccCCccCcCC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHH
Confidence 23578999999999997642210 011111111 1 1368999999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 308 VEESAQEFME 317 (324)
Q Consensus 308 i~~~~~~~~~ 317 (324)
|.+.+.....
T Consensus 165 l~~~i~~~~~ 174 (183)
T 2fu5_C 165 LARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9998865443
No 89
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=159.12 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=94.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+|+|++|||||||+++|++..+......++ +....... +...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~~~~~~-------------------------~~~~- 73 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL-----GVDFQMKT-------------------------LIVD- 73 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------CEEEE-------------------------EEET-
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc-----cceeEEEE-------------------------EEEC-
Confidence 4567899999999999999999999886643221111 00000000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~ 223 (324)
.....+.||||||+.++.. .....+. .+|++++|+|+..... ....| +..
T Consensus 74 -----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~~d~iilv~d~~~~~s~~~~~~~---~~~ 125 (199)
T 2p5s_A 74 -----------------GERTVLQLWDTAGQERFRS------IAKSYFR--KADGVLLLYDVTCEKSFLNIREW---VDM 125 (199)
T ss_dssp -----------------TEEEEEEEEECTTCTTCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHH---HHH
T ss_pred -----------------CEEEEEEEEECCCCcchhh------hHHHHHh--hCCEEEEEEECCChHHHHHHHHH---HHH
Confidence 1235688999999877521 1122222 2589999999865421 22233 222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+......++|+++|+||+|+......... ..+ .......+. .. .+.+++++||++|.||++
T Consensus 126 i~~~~~~~~piilv~NK~Dl~~~~~~~~~-~~v-------------~~~~~~~~~----~~-~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 126 IEDAAHETVPIMLVGNKADIRDTAATEGQ-KCV-------------PGHFGEKLA----MT-YGALFCETSAKDGSNIVE 186 (199)
T ss_dssp HHHHC---CCEEEEEECGGGHHHHHHTTC-CCC-------------CHHHHHHHH----HH-HTCEEEECCTTTCTTHHH
T ss_pred HHHhcCCCCCEEEEEECcccccccccccc-ccc-------------CHHHHHHHH----HH-cCCeEEEeeCCCCCCHHH
Confidence 23333357999999999998643210000 000 000000000 11 146899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
+|..|.+.+.
T Consensus 187 l~~~l~~~i~ 196 (199)
T 2p5s_A 187 AVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 90
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=154.25 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+..... ++. +...... .+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-------~~~-----~~~~~~~------------------~~~~~-- 54 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI-------TTI-----GVDFKIR------------------TVEIN-- 54 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCT-------TTB-----SEEEEEE------------------EEEET--
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccC-------CCc-----eeEEEEE------------------EEEEC--
Confidence 345789999999999999999999876542110 000 0000000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .... . -..+|++++|+|........ ....++..+..
T Consensus 55 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~ 109 (181)
T 3tw8_B 55 ----------------GEKVKLQIWDTAGQERFRT--ITST----Y--YRGTHGVIVVYDVTSAESFV-NVKRWLHEINQ 109 (181)
T ss_dssp ----------------TEEEEEEEEEETTGGGCSS--CCGG----G--GTTCSEEEEEEETTCHHHHH-HHHHHHHHHHH
T ss_pred ----------------CEEEEEEEEcCCCchhhhh--hHHH----H--hccCCEEEEEEECCCHHHHH-HHHHHHHHHHH
Confidence 1135789999999876521 1111 0 13468999999987632111 11111211111
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
...+.|+++|+||+|+........ .....+. . ..+.+++++||++|.|++++|+
T Consensus 110 -~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 110 -NCDDVCRILVGNKNDDPERKVVET--EDAYKFA----------------------G-QMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp -HCTTSEEEEEEECTTCGGGCCSCH--HHHHHHH----------------------H-HHTCCEEECBTTTTBSHHHHHH
T ss_pred -hCCCCCEEEEEECCCCchhcccCH--HHHHHHH----------------------H-HcCCeEEEEECCCCCCHHHHHH
Confidence 124689999999999875432110 0111111 1 1246899999999999999999
Q ss_pred HHHHHHHHHHHh
Q 020549 307 AVEESAQEFMET 318 (324)
Q Consensus 307 ~i~~~~~~~~~~ 318 (324)
.|.+.+......
T Consensus 164 ~l~~~~~~~~~~ 175 (181)
T 3tw8_B 164 CITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999988766544
No 91
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=158.30 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=95.6
Q ss_pred ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
.....++|+|+|.+|||||||+++|++..+.... .++.....+... +...
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------~~~~~~~~~~~~-----------------------~~~~ 68 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-------EPENPEDTYERR-----------------------IMVD 68 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-------TTTSCTTEEEEE-----------------------EEET
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccC-------CCCcccceEEEE-----------------------EEEC
Confidence 3456689999999999999999999865443110 000000000000 0000
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHH-HHhccCCcEEEEEEcCCCC--CCchhHHHhHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRS--ANPMTFMSNML 221 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~ 221 (324)
.....+.||||||+.++.. .+.. +++ .+|++++|+|.... +.....|...+
T Consensus 69 ------------------~~~~~l~i~Dt~g~~~~~~------~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i 122 (195)
T 3cbq_A 69 ------------------KEEVTLVVYDIWEQGDAGG------WLRDHCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRL 122 (195)
T ss_dssp ------------------TEEEEEEEECCCCCSGGGH------HHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred ------------------CEEEEEEEEecCCCccchh------hhHHHhhc--cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 1245788999999977521 1111 122 35888888887642 22223332211
Q ss_pred HHHHHHh-hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 222 YACSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 222 ~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.... ..++|+++|+||+|+....... .+....+.+ . .+.+++++||++|.|
T Consensus 123 ---~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 123 ---RAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAG---------------------T--LSCKHIETSAALHHN 174 (195)
T ss_dssp ---HHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--TTCEEEEEBTTTTBS
T ss_pred ---HHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHHH---------------------H--hCCEEEEEcCCCCCC
Confidence 1111 2479999999999997543210 011111111 1 136899999999999
Q ss_pred hHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQE 314 (324)
Q Consensus 301 v~~l~~~i~~~~~~ 314 (324)
|+++|+.|.+.+..
T Consensus 175 v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 175 TRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 92
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=2.3e-20 Score=152.81 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=97.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|++|||||||+++|++..+......+ .. ..+.. .. +...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~-~~~~~----~~------------------~~~~--- 51 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT-------IG-ASFMT----KT------------------VQYQ--- 51 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCC-------CS-EEEEE----EE------------------EEET---
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------ee-EEEEE----EE------------------EEEC---
Confidence 3478999999999999999999988654321110 00 00000 00 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.||||||+.++.. .. ...+ ..+|++++|+|........ ....++..+...
T Consensus 52 ---------------~~~~~~~~~Dt~G~~~~~~--~~----~~~~--~~~~~~i~v~d~~~~~s~~-~~~~~~~~l~~~ 107 (170)
T 1z0j_A 52 ---------------NELHKFLIWDTAGLERFRA--LA----PMYY--RGSAAAIIVYDITKEETFS-TLKNWVRELRQH 107 (170)
T ss_dssp ---------------TEEEEEEEEEECCSGGGGG--GT----HHHH--TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHH
T ss_pred ---------------CeEEEEEEEcCCCchhhhc--cc----HhhC--cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHh
Confidence 1235788999999876521 11 1112 3468999999986542111 111122222333
Q ss_pred hhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
.....|+++|+||+|+.+.... .+. ...+. . ..+.+++++||++|.|++++++
T Consensus 108 ~~~~~~iilv~nK~Dl~~~~~v~~~~---~~~~~----------------------~-~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 108 GPPSIVVAIAGNKCDLTDVREVMERD---AKDYA----------------------D-SIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp SCTTSEEEEEEECTTCGGGCCSCHHH---HHHHH----------------------H-HTTCEEEECBTTTTBSHHHHHH
T ss_pred CCCCCcEEEEEECCccccccccCHHH---HHHHH----------------------H-HcCCEEEEEeCCCCcCHHHHHH
Confidence 3457899999999999764321 111 11111 1 1246899999999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 93
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=6.9e-21 Score=159.56 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=94.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+|+|++|||||||+++|++..+...+.+ +.. ..+... +...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~-------t~~-~~~~~~-----------------------~~~~- 65 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP-------NLE-DTYSSE-----------------------ETVD- 65 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT-------TCC-EEEEEE-----------------------EEET-
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC-------Ccc-ceeeEE-----------------------EEEC-
Confidence 34568999999999999999999998865432211 000 000000 0000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~ 223 (324)
.....+.||||||++++.. . ...+ ..+|++++|+|.... +.....|...+
T Consensus 66 -----------------~~~~~l~i~Dt~G~~~~~~---~----~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i-- 117 (187)
T 3c5c_A 66 -----------------HQPVHLRVMDTADLDTPRN---C----ERYL--NWAHAFLVVYSVDSRQSFDSSSSYLELL-- 117 (187)
T ss_dssp -----------------TEEEEEEEEECCC---CCC---T----HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHH--
T ss_pred -----------------CEEEEEEEEECCCCCcchh---H----HHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHH--
Confidence 1245788999999887521 1 1223 235788888887642 22222332222
Q ss_pred HHHHh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecc-ccCC
Q 020549 224 CSILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS-VSGA 299 (324)
Q Consensus 224 ~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA-~~g~ 299 (324)
.... ..++|+++|+||+|+....... .++...+.+ . .+.+++++|| ++|.
T Consensus 118 -~~~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 118 -ALHAKETQRSIPALLLGNKLDMAQYRQVT--KAEGVALAG---------------------R--FGCLFFEVSACLDFE 171 (187)
T ss_dssp -HHHHHHHCCCCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H--HTCEEEECCSSSCSH
T ss_pred -HHHhhccCCCCCEEEEEECcchhhcCccC--HHHHHHHHH---------------------H--cCCcEEEEeecCccc
Confidence 2221 2589999999999996532110 011111111 1 1368999999 8999
Q ss_pred ChHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQ 313 (324)
Q Consensus 300 gv~~l~~~i~~~~~ 313 (324)
||+++|+.|.+.+.
T Consensus 172 gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 172 HVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999998764
No 94
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=2.3e-20 Score=165.78 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=101.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|++|||||||+|+|++..+..+ ..++++..... +.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~-------~~~~~t~~~~~------------------------~~~~----- 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVG-------NWPGVTVEKKE------------------------GIME----- 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEE-------ECTTSSCEEEE------------------------EEEE-----
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccC-------CCCCeEEEeeE------------------------EEEE-----
Confidence 46899999999999999999998754211 11111110000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
..+..+.||||||+.++............++....+|++++|+|+...... +.....+.
T Consensus 47 --------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~-------~~~~~~~~ 105 (271)
T 3k53_A 47 --------------YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRN-------LFLTLELF 105 (271)
T ss_dssp --------------ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH-------HHHHHHHH
T ss_pred --------------ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhh-------HHHHHHHH
Confidence 124568999999998763322222223333444668999999999764211 11122333
Q ss_pred hcC-CCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 229 KTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 229 ~~~-~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..+ .|+++|+||+|+........ ....+.+ .+ +.+++++||++|.|+++++..
T Consensus 106 ~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~----------------------~l-g~~~~~~Sa~~g~gi~~l~~~ 159 (271)
T 3k53_A 106 EMEVKNIILVLNKFDLLKKKGAKI---DIKKMRK----------------------EL-GVPVIPTNAKKGEGVEELKRM 159 (271)
T ss_dssp HTTCCSEEEEEECHHHHHHHTCCC---CHHHHHH----------------------HH-SSCEEECBGGGTBTHHHHHHH
T ss_pred hcCCCCEEEEEEChhcCcccccHH---HHHHHHH----------------------Hc-CCcEEEEEeCCCCCHHHHHHH
Confidence 455 99999999999865432110 1111111 11 478999999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+..
T Consensus 160 i~~~~~~ 166 (271)
T 3k53_A 160 IALMAEG 166 (271)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988754
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=3.6e-20 Score=153.88 Aligned_cols=162 Identities=23% Similarity=0.240 Sum_probs=94.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+++|++|||||||+++|++..+.. ..++.. .... .+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-~~~~------------------------~~~---- 58 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT--------TKPTIG-FNVE------------------------TLS---- 58 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE--------ECSSTT-CCEE------------------------EEE----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc--------cCCcCc-cceE------------------------EEE----
Confidence 467899999999999999999998765421 001110 0000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
..+..+.+|||||+.++.. .... . -..+|++++|+|+.....-.. ....+. ..
T Consensus 59 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~----~--~~~~d~ii~v~d~~~~~s~~~-~~~~~~--~~ 111 (183)
T 1moz_A 59 ----------------YKNLKLNVWDLGGQTSIRP--YWRC----Y--YADTAAVIFVVDSTDKDRMST-ASKELH--LM 111 (183)
T ss_dssp ----------------ETTEEEEEEEEC----CCT--TGGG----T--TTTEEEEEEEEETTCTTTHHH-HHHHHH--HH
T ss_pred ----------------ECCEEEEEEECCCCHhHHH--HHHH----H--hccCCEEEEEEECCCHHHHHH-HHHHHH--HH
Confidence 1246789999999877521 1100 0 124689999999876532211 111121 11
Q ss_pred Hh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChH
Q 020549 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 227 ~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~ 302 (324)
+. ..+.|+++|+||+|+.......++.+.+. .. . .....+++++||++|.|++
T Consensus 112 ~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 112 LQEEELQDAALLVFANKQDQPGALSASEVSKELN---------------------LV--ELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp TTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT---------------------TT--TCCSSCEEEEEEBGGGTBTHH
T ss_pred HcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC---------------------cc--cccCCceEEEEccCCCCcCHH
Confidence 21 36799999999999976422111111110 00 0 0123479999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
++++.|.+.+.+.
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=9e-20 Score=153.69 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+.||||||+.++.. .....+ ..+|++++|+|+........ ...++. ......+.|+++|+||+|+..
T Consensus 93 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~s~~~-~~~~~~--~i~~~~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS------IVPLYY--RGATCAIVVFDISNSNTLDR-AKTWVN--QLKISSNYIIILVANKIDKNK 161 (208)
T ss_dssp EEEEEEECTTGGGCTT------THHHHH--TTCSEEEEEEETTCHHHHHH-HHHHHH--HHHHHSCCEEEEEEECTTCC-
T ss_pred eEEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHH--HHHhhCCCcEEEEEECCCccc
Confidence 6789999999877521 111122 34689999999876421111 111121 112224599999999999322
Q ss_pred hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
.... .++...+.+ . .+.+++++||++|.|++++++.|.+.+..
T Consensus 162 ~~~~---~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVD---ILEVQKYAQ---------------------D--NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSC---HHHHHHHHH---------------------H--TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCC---HHHHHHHHH---------------------H--cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1111 111111111 1 24689999999999999999999988754
No 97
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=4e-21 Score=164.64 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=99.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|.+|||||||+++|++..+......+ .+....... ....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-----~~~~~~~~~-------------------------~~~~-- 56 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNAT-----VGAVNHPVT-------------------------FLDD-- 56 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETT-----TTEEEEEEE-------------------------EEBT--
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----cceeeEEEE-------------------------EEeC--
Confidence 45689999999999999999999987654211100 000000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc--hhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--MTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~--~~~~~~~~~~~ 224 (324)
+ .....+.||||||+.++.. .... .+ ..+|++++|+|....... ...| +..+
T Consensus 57 ----~-----------~~~~~~~l~Dt~G~~~~~~--~~~~----~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~~ 110 (218)
T 4djt_A 57 ----Q-----------GNVIKFNVWDTAGQEKKAV--LKDV----YY--IGASGAILFFDVTSRITCQNLARW---VKEF 110 (218)
T ss_dssp ----T-----------SCEEEEEEEEECSGGGTSC--CCHH----HH--TTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred ----C-----------CcEEEEEEEecCCchhhch--HHHH----Hh--hcCCEEEEEEeCCCHHHHHHHHHH---HHHH
Confidence 0 1125689999999877521 1111 11 336899999998764322 2233 2223
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
......++|+++|+||+|+........ .....+ ....+.+++++||++|.|++++
T Consensus 111 ~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 111 QAVVGNEAPIVVCANKIDIKNRQKISK--KLVMEV-----------------------LKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp HHHHCSSSCEEEEEECTTCC----CCH--HHHHHH-----------------------TTTCCCEEEEEBTTTTBTTTHH
T ss_pred HHhcCCCCCEEEEEECCCCccccccCH--HHHHHH-----------------------HHHcCCcEEEEecCCCCCHHHH
Confidence 344455799999999999976532110 011100 0113468999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFME 317 (324)
Q Consensus 305 ~~~i~~~~~~~~~ 317 (324)
|..|.+.+.....
T Consensus 166 ~~~l~~~~~~~~~ 178 (218)
T 4djt_A 166 FLHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHhcccc
Confidence 9999998876443
No 98
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.82 E-value=3.2e-20 Score=150.99 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=94.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
.+|+++|++|||||||+++|++..+..... ++.. ..+... +...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-------~~~~-~~~~~~-----------------------~~~~----- 47 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-------PTIE-DSYRKQ-----------------------VVID----- 47 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-------TTCC-EEEEEE-----------------------EEET-----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccC-------Cccc-eEEEEE-----------------------EEEC-----
Confidence 679999999999999999999876543211 0000 000000 0000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh-
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~- 228 (324)
.....+.||||||+.++.. .....+. .+|.+++++|....... ......+..+....
T Consensus 48 -------------~~~~~~~~~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~ 105 (166)
T 2ce2_X 48 -------------GETCLLDILDTAGQEEYSA------MRDQYMR--TGEGFLCVFAINNTKSF-EDIHQYREQIKRVKD 105 (166)
T ss_dssp -------------TEEEEEEEEECCCCSSCCH------HHHHHHH--HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT
T ss_pred -------------CEEEEEEEEECCCchhhhH------HHHHhhc--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC
Confidence 1235678999999877521 1111222 25889999997643211 11111122122222
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..++|+++|+||+|+.......+. ...+.+ . .+.+++++||++|.|++++++.|
T Consensus 106 ~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 106 SDDVPMVLVGNKSDLAARTVESRQ---AQDLAR---------------------S--YGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp CSCCCEEEEEECTTCSCCCSCHHH---HHHHHH---------------------H--HTCCEEEECTTTCTTHHHHHHHH
T ss_pred CCCCcEEEEEEchhhhhcccCHHH---HHHHHH---------------------H--cCCeEEEecCCCCCCHHHHHHHH
Confidence 237999999999999863221111 111111 1 13689999999999999999999
Q ss_pred HHHHH
Q 020549 309 EESAQ 313 (324)
Q Consensus 309 ~~~~~ 313 (324)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T 2ce2_X 160 VREIR 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 99
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=4.7e-20 Score=154.35 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=94.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|.+|||||||+++|++..+..... ++. ...+... +...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~-~~~~~~~-----------------------~~~~--- 65 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-------PTI-EDSYRKQ-----------------------VVID--- 65 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC-------TTC-CEEEEEE-----------------------EEET---
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccC-------Ccc-ceEEEEE-----------------------EEEC---
Confidence 34789999999999999999999876543110 000 0000000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~ 225 (324)
.....+.||||||+.++.. ..... -..+|++++|+|...... ....|... +.
T Consensus 66 ---------------~~~~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~---i~ 119 (190)
T 3con_A 66 ---------------GETCLLDILDTAGQEEYSA------MRDQY--MRTGEGFLCVFAINNSKSFADINLYREQ---IK 119 (190)
T ss_dssp ---------------TEEEEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHHHHHHHH---HH
T ss_pred ---------------CEEEEEEEEECCChHHHHH------HHHHh--hCcCCEEEEEEECcCHHHHHHHHHHHHH---HH
Confidence 1235688999999876521 11111 134689999999865421 12223222 22
Q ss_pred HHh-hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 226 ILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 226 ~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
... ..++|+++|+||+|+.......+. ...+.+ . .+.+++++||++|.|++++
T Consensus 120 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 120 RVKDSDDVPMVLVGNKCDLPTRTVDTKQ---AHELAK---------------------S--YGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp HHHTCSCCCEEEEEECTTCSCCCSCHHH---HHHHHH---------------------H--HTCCEEECCTTTCTTHHHH
T ss_pred HHhCCCCCeEEEEEECCcCCcccCCHHH---HHHHHH---------------------H--cCCeEEEEeCCCCCCHHHH
Confidence 222 247999999999999763211111 111111 1 1368999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFME 317 (324)
Q Consensus 305 ~~~i~~~~~~~~~ 317 (324)
++.|.+.+.....
T Consensus 174 ~~~l~~~~~~~~~ 186 (190)
T 3con_A 174 FYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876443
No 100
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=2.1e-20 Score=177.95 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=89.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
+.+++|+|+|++|||||||+|+|++..... ++.+++++ ++.. ...+.
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------vs~~~gtT----~d~~--------------~~~i~--- 277 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAI------------VSHMPGTT----RDYI--------------EECFI--- 277 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEE---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCce----EEEE--------------EEEEE---
Confidence 456889999999999999999999874321 23333332 1110 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHH-HHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+..+.||||||+.++ ....... +...... ..+|++++|+|+........ .......+
T Consensus 278 ----------------~~g~~l~liDT~G~~~~--~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l 338 (476)
T 3gee_A 278 ----------------HDKTMFRLTDTAGLREA--GEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELK 338 (476)
T ss_dssp ----------------ETTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHH
T ss_pred ----------------ECCeEEEEEECCCCCcc--hhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHH
Confidence 12567899999998775 2211111 1111211 45799999999988765422 11112222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+. ++|+|+|+||+|+........ +.+. .. ...+++++||++|.||++|
T Consensus 339 ~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~-------------------------~~-~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 339 AAHP--AAKFLTVANKLDRAANADALI--RAIA-------------------------DG-TGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp HHCT--TSEEEEEEECTTSCTTTHHHH--HHHH-------------------------HH-HTSCEEECBTTTTBSHHHH
T ss_pred HhcC--CCCEEEEEECcCCCCccchhH--HHHH-------------------------hc-CCCceEEEEECCCCCHHHH
Confidence 2222 799999999999987653211 1111 11 1368999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
++.|.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
No 101
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-19 Score=150.65 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=98.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+++|++|||||||+++|++..+.... .+..+ .+.. ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~~~t-~~~~--------------------~~------ 41 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK-------------RPGVT-RKII--------------------EI------ 41 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSS-------------STTCT-TSCE--------------------EE------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCC-------------CCCcc-ceeE--------------------EE------
Confidence 57999999999999999999987654321 11111 0000 00
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-----hhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhH--
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-----ASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNM-- 220 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-----~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~-- 220 (324)
....+.||||||+.....+. ........++.. ..++++++++|..........|...
T Consensus 42 --------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~ 107 (190)
T 2cxx_A 42 --------------EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE 107 (190)
T ss_dssp --------------EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC
T ss_pred --------------ecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCc
Confidence 01178899999964331111 111122223332 3357888888874322211333321
Q ss_pred ----HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeecc
Q 020549 221 ----LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSS 295 (324)
Q Consensus 221 ----~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA 295 (324)
......+...++|+++|+||+|+.... .+. ...+.+ .++. .+.. ..+++++||
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~---~~~~~~--------------~~~~---~~~~~~~~~~~~Sa 165 (190)
T 2cxx_A 108 IPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEV---INFLAE--------------KFEV---PLSEIDKVFIPISA 165 (190)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHH---HHHHHH--------------HHTC---CGGGHHHHEEECCT
T ss_pred cHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHH---HHHHHH--------------Hhhh---hhhccCCcEEEEec
Confidence 122234445689999999999998754 111 111111 1111 0000 236899999
Q ss_pred ccCCChHHHHHHHHHHHHHHH
Q 020549 296 VSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 296 ~~g~gv~~l~~~i~~~~~~~~ 316 (324)
++|.|++++|+.|.+.+.+..
T Consensus 166 ~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 166 KFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp TTCTTHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHhcchhh
Confidence 999999999999999886643
No 102
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.8e-20 Score=154.83 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=98.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+..+|+|+|++|||||||+++|++..+...+.+ +.. ..+... +...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-------t~~-~~~~~~-----------------------~~~~-- 72 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP-------TLE-STYRHQ-----------------------ATID-- 72 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-------TCC-EEEEEE-----------------------EEET--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCC-------CCC-ceEEEE-----------------------EEEC--
Confidence 4568999999999999999999998866432111 000 000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.+. ......++ .+|++++|+|..... .....|...+.
T Consensus 73 ----------------~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~-- 125 (196)
T 2atv_A 73 ----------------DEVVSMEILDTAGQEDT-------IQREGHMR--WGEGFVLVYDITDRGSFEEVLPLKNILD-- 125 (196)
T ss_dssp ----------------TEEEEEEEEECCCCCCC-------HHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHH--
T ss_pred ----------------CEEEEEEEEECCCCCcc-------cchhhhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHH--
Confidence 12457889999998761 11111222 258999999986532 22223322221
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC-ChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~-gv~~ 303 (324)
......++|+++|+||+|+....... .+....+.+ .+ +.+++++||++|. |+++
T Consensus 126 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~~--~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 126 EIKKPKNVTLILVGNKADLDHSRQVS--TEEGEKLAT---------------------EL--ACAFYECSACTGEGNITE 180 (196)
T ss_dssp HHHTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------HH--TSEEEECCTTTCTTCHHH
T ss_pred HhhCCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------Hh--CCeEEEECCCcCCcCHHH
Confidence 11223589999999999997642110 011111111 11 4689999999999 9999
Q ss_pred HHHHHHHHHHHH
Q 020549 304 YFKAVEESAQEF 315 (324)
Q Consensus 304 l~~~i~~~~~~~ 315 (324)
+|+.|.+.+.+.
T Consensus 181 l~~~l~~~i~~~ 192 (196)
T 2atv_A 181 IFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 103
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=4e-20 Score=151.29 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=95.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
..+|+++|++|||||||+++|++..+.....+ +.. ..+.. . .+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-------~~~-~~~~~----~------------------~~~~~---- 48 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP-------TIG-AAFLT----Q------------------RVTIN---- 48 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC-------CSS-EEEEE----E------------------EEEET----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccc-eeEEE----E------------------EEEEC----
Confidence 36899999999999999999998765432211 000 00000 0 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+...... ......+..+....
T Consensus 49 --------------~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~ 105 (170)
T 1ek0_A 49 --------------EHTVKFEIWDTAGQERFAS------LAPXYY--RNAQAALVVYDVTKPQSF-IKARHWVKELHEQA 105 (170)
T ss_dssp --------------TEEEEEEEEEECCSGGGGG------GHHHHH--TTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS
T ss_pred --------------CEEEEEEEEECCCChhhhh------hhhhhh--ccCcEEEEEEecCChHHH-HHHHHHHHHHHHhc
Confidence 1245789999999877521 111222 346899999998753211 11111122222222
Q ss_pred hcCCCeEEEeeccccCChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..+.|+++|+||+|+.......... +....+. . ..+.+++++||++|.|++++|+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA----------------------E-EKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH----------------------H-HHTCEEEECCTTTCTTHHHHHHH
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHHH
Confidence 3579999999999997542100000 0111110 1 12468999999999999999999
Q ss_pred HHHHH
Q 020549 308 VEESA 312 (324)
Q Consensus 308 i~~~~ 312 (324)
|.+.+
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 98754
No 104
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=155.56 Aligned_cols=161 Identities=19% Similarity=0.290 Sum_probs=95.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhccc-CCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
..+.++|+|+|.+|||||||+++|++... ..... ++.. ... . .+.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~t~~-~~~------~------------------~~~-- 63 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-------PTIG-FSI------E------------------KFK-- 63 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-------CCSS-EEE------E------------------EEE--
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-------Cccc-eeE------E------------------EEE--
Confidence 44678999999999999999999998762 22111 0010 000 0 000
Q ss_pred ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHH
Q 020549 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLY 222 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~ 222 (324)
..+..+.||||||++++.. ... ..+ ..+|++++|+|+... +.....| +.
T Consensus 64 ------------------~~~~~~~l~Dt~G~~~~~~--~~~----~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~~ 114 (190)
T 2h57_A 64 ------------------SSSLSFTVFDMSGQGRYRN--LWE----HYY--KEGQAIIFVIDSSDRLRMVVAKEE---LD 114 (190)
T ss_dssp ------------------CSSCEEEEEEECCSTTTGG--GGG----GGG--GGCSEEEEEEETTCHHHHHHHHHH---HH
T ss_pred ------------------ECCEEEEEEECCCCHHHHH--HHH----HHH--hcCCEEEEEEECCCHHHHHHHHHH---HH
Confidence 1256889999999887621 111 111 336999999998763 2111122 11
Q ss_pred HHHHHhh-----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccc
Q 020549 223 ACSILYK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSV 296 (324)
Q Consensus 223 ~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~ 296 (324)
..+.. .++|+++|+||+|+.......+..+.+. + . .+ ....+++++||+
T Consensus 115 --~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~-~---------------------~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 115 --TLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC-L-E---------------------NIKDKPWHICASDAI 169 (190)
T ss_dssp --HHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT-G-G---------------------GCCSSCEEEEECBTT
T ss_pred --HHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC-h-h---------------------hccCCceEEEEccCC
Confidence 11222 5799999999999976422211111110 0 0 10 124689999999
Q ss_pred cCCChHHHHHHHHHHHHH
Q 020549 297 SGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 297 ~g~gv~~l~~~i~~~~~~ 314 (324)
+|.||+++++.|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 105
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=2.1e-20 Score=156.31 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=97.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+.++|+|+|++|||||||+++|++..+.....+ +...+ ...+. ..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-------t~~~~--~~~~~-----------------------~~- 63 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-------EGGRF--KKEIV-----------------------VD- 63 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-------TCEEE--EEEEE-----------------------ET-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-------CcceE--EEEEE-----------------------EC-
Confidence 44568999999999999999999999876532211 11000 00000 00
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~ 223 (324)
.....+.||||||++++. .++ .+|++++|+|..... .....| +..
T Consensus 64 -----------------~~~~~l~i~Dt~G~~~~~-----------~~~--~~~~~i~v~d~~~~~s~~~~~~~---~~~ 110 (184)
T 3ihw_A 64 -----------------GQSYLLLIRDEGGPPELQ-----------FAA--WVDAVVFVFSLEDEISFQTVYNY---FLR 110 (184)
T ss_dssp -----------------TEEEEEEEEECSSSCCHH-----------HHH--HCSEEEEEEETTCHHHHHHHHHH---HHH
T ss_pred -----------------CEEEEEEEEECCCChhhh-----------eec--CCCEEEEEEECcCHHHHHHHHHH---HHH
Confidence 123567899999998762 111 258999999986532 111222 211
Q ss_pred HHHHh-hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 224 CSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 224 ~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
+.... ..+.|+++|+||+|+.......-..+....+. ..+...+++++||++|.||+
T Consensus 111 i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 111 LCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS----------------------TDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp HHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----------------------HHTTTCEEEEEBTTTTBTHH
T ss_pred HHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH----------------------HHcCCCeEEEecCCCCCCHH
Confidence 11111 15789999999999953211000001111111 11234789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
++|..|.+.+...
T Consensus 169 ~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 169 RVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 106
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=1.5e-19 Score=171.30 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=97.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+|+|.||||||||+|+|++..... +...++.+ +++. .+.+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------v~~~~g~T----~d~~--------------~~~~~------ 45 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------VEDEEGVT----RDPV--------------QDTVE------ 45 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC------------------------------CCS--------------EEEEE------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------ecCCCCCc----ccee--------------eEEEE------
Confidence 479999999999999999999875432 22333332 1110 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||++... .......+..... -..+|++++|+|+..+....+.+. ...+
T Consensus 46 -------------~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i-----~~~l 106 (439)
T 1mky_A 46 -------------WYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESL-----ADFL 106 (439)
T ss_dssp -------------ETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHH-----HHHH
T ss_pred -------------ECCeEEEEEECCCccccc-cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH-----HHHH
Confidence 224578999999987531 1111122222211 245799999999988876655331 1234
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhH-HHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDF-EVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l 304 (324)
...++|+++|+||+|+.... . ... . ++ ....+++++||++|.|+++|
T Consensus 107 ~~~~~p~ilv~NK~D~~~~~--~---~~~~~-------------------------~~~~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 107 RKSTVDTILVANKAENLREF--E---REVKP-------------------------ELYSLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp HHHTCCEEEEEESCCSHHHH--H---HHTHH-------------------------HHGGGSSCSCEECBTTTTBSHHHH
T ss_pred HHcCCCEEEEEeCCCCcccc--H---HHHHH-------------------------HHHhcCCCCEEEEeccCCCCHHHH
Confidence 44689999999999985320 0 001 1 11 12237899999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
++.|.+.+++.
T Consensus 157 ~~~i~~~l~~~ 167 (439)
T 1mky_A 157 LETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhcccc
Confidence 99999988754
No 107
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=7.7e-20 Score=156.49 Aligned_cols=174 Identities=20% Similarity=0.196 Sum_probs=100.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+|+|++|||||||+++|++..+......++. .+.....+.+.. . .++++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~----~--------------~~~~~~~~--- 80 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG-IDFREKRVVYNA----Q--------------GPNGSSGK--- 80 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEE-EEEEEEEEEEEC-------------------------CC---
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCcee-EEEEEEEEEECC----c--------------cccccccC---
Confidence 3458899999999999999999998877544333221 000000000000 0 00000000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+ ..+|++++|+|+..... .......+..
T Consensus 81 ----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~iilV~D~~~~~s----~~~~~~~l~~ 132 (217)
T 2f7s_A 81 ----------------AFKVHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLMFDLTSQQS----FLNVRNWMSQ 132 (217)
T ss_dssp ----------------EEEEEEEEEEEESHHHHHH------HHHHHH--TTCCEEEEEEETTCHHH----HHHHHHHHHT
T ss_pred ----------------ceeEEEEEEECCCcHhHHh------HHHHHh--cCCCEEEEEEECcCHHH----HHHHHHHHHH
Confidence 1135789999999766411 111222 34699999999865321 1111111122
Q ss_pred Hhh----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 227 LYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 227 ~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
+.. .++|+++|+||+|+....... .+....+.+ . .+.+++++||++|.||+
T Consensus 133 i~~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~ 187 (217)
T 2f7s_A 133 LQANAYCENPDIVLIGNKADLPDQREVN--ERQARELAD---------------------K--YGIPYFETSAATGQNVE 187 (217)
T ss_dssp CCCCCTTTCCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCCEEEEBTTTTBTHH
T ss_pred HHHhcCcCCCCEEEEEECCccccccccC--HHHHHHHHH---------------------H--CCCcEEEEECCCCCCHH
Confidence 221 578999999999997542210 011111111 1 24689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
++|+.|.+.+.+.
T Consensus 188 ~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 188 KAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 108
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=3.8e-20 Score=154.87 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=98.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
++..+|+++|++|||||||+++|++..+.. ..++.. .... .+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-~~~~-------------------------~~~--- 62 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--------TVPTVG-VNLE-------------------------TLQ--- 62 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--------ECSSTT-CCEE-------------------------EEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC--------cCCCCc-eEEE-------------------------EEE---
Confidence 467899999999999999999998764421 011110 0000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||++++.. .... . -..+|++++|+|+.+...-.. ....+. ..
T Consensus 63 ----------------~~~~~~~~~Dt~G~~~~~~--~~~~----~--~~~~d~ii~v~d~~~~~s~~~-~~~~~~--~~ 115 (189)
T 2x77_A 63 ----------------YKNISFEVWDLGGQTGVRP--YWRC----Y--FSDTDAVIYVVDSTDRDRMGV-AKHELY--AL 115 (189)
T ss_dssp ----------------ETTEEEEEEEECCSSSSCC--CCSS----S--STTCCEEEEEEETTCCTTHHH-HHHHHH--HH
T ss_pred ----------------ECCEEEEEEECCCCHhHHH--HHHH----H--hhcCCEEEEEEeCCCHHHHHH-HHHHHH--HH
Confidence 1256789999999877521 1000 0 124699999999876532211 111111 11
Q ss_pred Hh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCCh
Q 020549 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 227 ~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv 301 (324)
+. ..+.|+++|+||+|+.......++.+.+. . .+ ....+++++||++|.|+
T Consensus 116 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG---------------------V---SSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp HTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTH
T ss_pred HhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhC---------------------h---hhccCCceEEEEccCCCccCH
Confidence 22 24799999999999986532211111110 0 00 11347999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQEF 315 (324)
Q Consensus 302 ~~l~~~i~~~~~~~ 315 (324)
+++++.|.+.+.+.
T Consensus 172 ~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 172 VEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988653
No 109
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=3e-20 Score=155.58 Aligned_cols=166 Identities=18% Similarity=0.214 Sum_probs=95.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+|+|.+|||||||+++|++..+......+ .. ..+.. . .+...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~----~------------------~~~~~-- 65 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT-------IG-VDFRE----R------------------AVDID-- 65 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCC-------CS-CCEEE----E------------------EEEET--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-------cc-eEEEE----E------------------EEEEC--
Confidence 35689999999999999999999987665322110 00 00000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++. ... ....+ ..+|++++|+|+..... ....|...+ .
T Consensus 66 ----------------~~~~~~~l~Dt~G~~~~~--~~~---~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i--~ 120 (189)
T 1z06_A 66 ----------------GERIKIQLWDTAGQERFR--KSM---VQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEEC--K 120 (189)
T ss_dssp ----------------TEEEEEEEEECCCSHHHH--TTT---HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH--H
T ss_pred ----------------CEEEEEEEEECCCchhhh--hhh---hHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHH--H
Confidence 113578999999987652 111 11122 34689999999875321 122232211 1
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC---CCh
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG---AGI 301 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g---~gv 301 (324)
......++|+++|+||+|+....... .+....+. . ..+.+++++||++| .||
T Consensus 121 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 121 QHLLANDIPRILVGNKCDLRSAIQVP--TDLAQKFA----------------------D-THSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp HHCCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------H-HTTCCEEECCSSSGGGGSCH
T ss_pred HhcCCCCCCEEEEEECccccccceeC--HHHHHHHH----------------------H-HcCCEEEEEeCCcCCcccCH
Confidence 22224579999999999996542210 01111111 1 12468999999999 999
Q ss_pred HHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQE 314 (324)
Q Consensus 302 ~~l~~~i~~~~~~ 314 (324)
+++|..|.+.+++
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 110
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=9.9e-20 Score=153.17 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=92.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..+..+|+|+|++|||||||+++|++..+.. ..+ ++. .... .+ .
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~-------t~~-~~~~-~~------------------------~-- 69 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP-------TIG-FNVE-TV------------------------E-- 69 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE-------ETT-EEEE-EE------------------------E--
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC-------cCc-eeEE-EE------------------------E--
Confidence 3467899999999999999999998765532 111 110 0000 00 0
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC- 224 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~- 224 (324)
.....+.||||||+.++.. . ....+ ..+|++++|+|+.....- ......+..+
T Consensus 70 -----------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~iilv~D~~~~~s~-~~~~~~l~~~~ 123 (192)
T 2b6h_A 70 -----------------YKNICFTVWDVGGQDKIRP--L----WRHYF--QNTQGLIFVVDSNDRERV-QESADELQKML 123 (192)
T ss_dssp -----------------ETTEEEEEEECC-----CT--T----HHHHH--HTCCEEEEEEETTCGGGH-HHHHHHHHHHH
T ss_pred -----------------ECCEEEEEEECCCCHhHHH--H----HHHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHh
Confidence 1256789999999877521 1 11122 246899999998764211 1111111111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~ 302 (324)
......+.|+++|+||+|+.......++.+.+. . .+ ....+++++||++|.|++
T Consensus 124 ~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 124 QEDELRDAVLLVFANKQDMPNAMPVSELTDKLG---------------------L---QHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp TCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCSSCCEEEEECBTTTTBTHH
T ss_pred cccccCCCeEEEEEECCCCCCCCCHHHHHHHhC---------------------c---ccccCCceEEEECcCCCcCCHH
Confidence 111124799999999999976432111111110 0 00 123579999999999999
Q ss_pred HHHHHHHHHH
Q 020549 303 AYFKAVEESA 312 (324)
Q Consensus 303 ~l~~~i~~~~ 312 (324)
++++.|.+.+
T Consensus 180 ~l~~~l~~~i 189 (192)
T 2b6h_A 180 DGLDWLSHEL 189 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 111
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-20 Score=161.10 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEc--CCCCCCchhHHHhHHHHHHHH-hhcCCCeEEEeecc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD--TPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKT 241 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD--~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~ 241 (324)
...+++|||+|+...+ ..+...+ ...++++++|+| ...++.....|...+ ... ...++|+|+|+||+
T Consensus 86 ~~~l~~~Dt~g~~~~~------~~l~~~~-~~~a~~~ilVydvt~~~sf~~~~~~~~~l---~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 86 SATIILLDMWENKGEN------EWLHDHC-MQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEEECCTTTTHHH------HHHHHCC-CCCCSEEEEEEETTCHHHHHHHHHHHHHH---HTSGGGTTSCEEEEEECT
T ss_pred eeEEEEeecCCCcchh------hhHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHH---HHHhCCCCCcEEEEEECh
Confidence 3467899999986521 1121111 122445555544 444444433342222 111 12479999999999
Q ss_pred ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
|+....... .+....+. .. .++++++|||++|.||+++|+.|.+.+..
T Consensus 156 DL~~~r~v~--~~e~~~~a----------------------~~-~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 156 DLVRCREVS--VSEGRACA----------------------VV-FDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TCGGGCCSC--HHHHHHHH----------------------HH-HTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhcCceEe--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 997532110 00001000 11 13689999999999999999999988753
No 112
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.8e-20 Score=156.77 Aligned_cols=166 Identities=17% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...+..++ +.. +.. . .+...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~-- 58 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI-----GVE---FAT----R------------------TLEIE-- 58 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------CCS---EEE----E------------------EEEET--
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-----cce---eEE----E------------------EEEEC--
Confidence 345789999999999999999999987654332211 000 000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .... . -..+|++++|+|........ ....++..+..
T Consensus 59 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~----~--~~~~d~vilV~D~~~~~s~~-~~~~~l~~i~~ 113 (223)
T 3cpj_B 59 ----------------GKRIKAQIWDTAGQERYRA--ITSA----Y--YRGAVGALIVYDISKSSSYE-NCNHWLSELRE 113 (223)
T ss_dssp ----------------TEEEEEEEECCTTTTTTTC--CCGG----G--TTTCCEEEEEEC-CCHHHHH-HHHHHHHHHHH
T ss_pred ----------------CEEEEEEEEECCCccchhh--hHHH----H--hccCCEEEEEEeCCCHHHHH-HHHHHHHHHHH
Confidence 1135789999999877521 1110 0 13468999999986532111 11111222222
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....++|+++|+||+|+....... .+....+.+ . .+.+++++||++|.||+++|+
T Consensus 114 ~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 114 NADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQ---------------------E--NQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp HCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCCC-CCCHHHHHH
T ss_pred hCCCCCeEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence 223578999999999997532210 011111110 1 246899999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
.|.+.+.+
T Consensus 169 ~l~~~i~~ 176 (223)
T 3cpj_B 169 ELINTIYQ 176 (223)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99988753
No 113
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=2.8e-19 Score=170.96 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.++. ..+...+ ..+|++++|+|+.++..+++.. .+..+...++|+|+|+||+|+.
T Consensus 72 ~~~i~iiDtPGh~~~~------~~~~~~~--~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHADLI------RAVVSAA--DIIDLALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHHHHH------HHHHHHT--TSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSS
T ss_pred CEEEEEEECCChHHHH------HHHHHHH--hhCCEEEEEEecCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 4578999999976641 1222222 4579999999999887666522 2234455789999999999999
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
+.+......+++..+.+. . .+...+++++||++|.|+++|++.|.+.++
T Consensus 139 ~~~~~~~~~~~l~~~l~~--------------------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQS--------------------THNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhh--------------------hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 865443333333322111 1 123578999999999999999999999876
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.9e-20 Score=155.76 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=96.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...+.++ .. ..+... +...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~~-----------------------~~~~-- 52 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT-------IE-DTYRQV-----------------------ISCD-- 52 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCC-------CC-EEEEEE-----------------------EEET--
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCc-------cc-cceeEE-----------------------EEEC--
Confidence 35688999999999999999999987664322110 00 000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~ 224 (324)
.....+.||||||+.++.. .....+. .+|++++|+|.... +.....|...+
T Consensus 53 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i--- 105 (199)
T 2gf0_A 53 ----------------KSVCTLQITDTTGSHQFPA------MQRLSIS--KGHAFILVFSVTSKQSLEELGPIYKLI--- 105 (199)
T ss_dssp ----------------TEEEEEEEEECCGGGSCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHH---
T ss_pred ----------------CEEEEEEEEeCCChHHhHH------HHHHhhc--cCCEEEEEEECcCHHHHHHHHHHHHHH---
Confidence 1234788999999877521 1111222 25899999998652 22222232222
Q ss_pred HHHh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 225 SILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 225 ~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
..+. ..+.|+++|+||+|+.......+.. ..+.. . ...+++++||++|.|++
T Consensus 106 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~--~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 106 VQIKGSVEDIPVMLVGNKCDETQREVDTREA---QAVAQ---------------------E--WKCAFMETSAKMNYNVK 159 (199)
T ss_dssp HHHHSCGGGSCEEEEEECTTCSSCSSCHHHH---HHHHH---------------------H--HTCEEEECBTTTTBSHH
T ss_pred HHHhcCCCCCCEEEEEECccCCccccCHHHH---HHHHH---------------------H--hCCeEEEEecCCCCCHH
Confidence 2222 2478999999999997632111111 11111 1 13689999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 303 AYFKAVEESAQ 313 (324)
Q Consensus 303 ~l~~~i~~~~~ 313 (324)
++++.|.+.+.
T Consensus 160 ~l~~~l~~~~~ 170 (199)
T 2gf0_A 160 ELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 115
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=1.9e-20 Score=160.94 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=100.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
....++|+++|.+|||||||+++|+...+...... .++.+...... ...
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~-----t~~~~~~~~~~-------------------------~~~- 60 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA-----TLGVEVHPLVF-------------------------HTN- 60 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEET-----TTTEEEEEEEE-------------------------EET-
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-----ccceeEEEEEE-------------------------EEC-
Confidence 34568999999999999999999766554421110 00000000000 000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~ 223 (324)
.....+.||||||+.++.. ... ..+ ..+|++++|+|...... ....|...+
T Consensus 61 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~-- 113 (221)
T 3gj0_A 61 -----------------RGPIKFNVWDTAGQEKFGG--LRD----GYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDL-- 113 (221)
T ss_dssp -----------------TEEEEEEEEEECSGGGTSC--CCH----HHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH--
T ss_pred -----------------CEEEEEEEEeCCChHHHhH--HHH----HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHH--
Confidence 1245789999999877521 111 111 24689999999876321 122332222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
... ..++|+++|+||+|+.+..... ....+ .. ..+.+++++||++|.||++
T Consensus 114 -~~~-~~~~p~ilv~nK~Dl~~~~~~~----~~~~~--------------~~---------~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 114 -VRV-CENIPIVLCGNKVDIKDRKVKA----KSIVF--------------HR---------KKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp -HHH-STTCCEEEEEECTTSSSCSSCG----GGCCH--------------HH---------HHTCEEEECBGGGTBTTTH
T ss_pred -HHh-CCCCCEEEEEECCccccccccH----HHHHH--------------HH---------HcCCEEEEEeCCCCCCHHH
Confidence 111 2379999999999997643211 11100 01 1246899999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 020549 304 YFKAVEESAQEFMET 318 (324)
Q Consensus 304 l~~~i~~~~~~~~~~ 318 (324)
+|..|.+.+...+..
T Consensus 165 l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 165 PFLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhCccc
Confidence 999999998765543
No 116
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=4.4e-20 Score=154.01 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=97.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+++|++..+...+.+++ . ..+...+ ...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~~-- 51 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------F-ENYTASF-----------------------EID-- 51 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------ECS--
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-------c-eeEEEEE-----------------------EEC--
Confidence 355789999999999999999999886653221111 0 0000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~ 223 (324)
.....+.||||||++++.. .... .-..+|++++|+|...... .. ..|...+
T Consensus 52 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i-- 105 (184)
T 1m7b_A 52 ----------------TQRIELSLWDTSGSPYYDN--VRPL------SYPDSDAVLICFDISRPETLDSVLKKWKGEI-- 105 (184)
T ss_dssp ----------------SCEEEEEEEEECCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred ----------------CEEEEEEEEECCCChhhhh--hHHh------hcCCCcEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence 1245788999999877521 1100 1134689999999865321 11 2232212
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc--CccchhhHHHHHHHhHHHHhccCceeeeccc-cCCC
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAG 300 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~-~g~g 300 (324)
... ..+.|+++|+||+|+........ .+. ....+ .......++ ......+++++||+ +|.|
T Consensus 106 -~~~-~~~~piilv~nK~Dl~~~~~~~~---~~~---~~~~~~v~~~~~~~~~--------~~~~~~~~~e~Sa~~~~~g 169 (184)
T 1m7b_A 106 -QEF-CPNTKMLLVGCKSDLRTDVSTLV---ELS---NHRQTPVSYDQGANMA--------KQIGAATYIECSALQSENS 169 (184)
T ss_dssp -HHH-CTTCEEEEEEECGGGGGCHHHHH---HHH---TTTCCCCCHHHHHHHH--------HHHTCSEEEECBTTTBHHH
T ss_pred -HHH-CCCCCEEEEEEcchhhcchhhHh---hhh---hcccCCCCHHHHHHHH--------HHcCCcEEEEeeecCCCcC
Confidence 211 24799999999999975421100 000 00000 000011111 11234689999999 6899
Q ss_pred hHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQ 313 (324)
Q Consensus 301 v~~l~~~i~~~~~ 313 (324)
|+++|+.|.+.+.
T Consensus 170 i~~l~~~i~~~~l 182 (184)
T 1m7b_A 170 VRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 117
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.7e-20 Score=151.78 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=94.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+++|++|||||||+++|++..+.....+ +. .... +.. +...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-------t~---~~~~----~~~-----------------~~~~---- 47 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-------TV---EDTY----RQV-----------------ISCD---- 47 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-------CS---CEEE----EEE-----------------EEET----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------Cc---cccE----EEE-----------------EEEC----
Confidence 47899999999999999999998765432111 00 0000 000 0000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. .....+. .+|++++|+|..... .....|...+ ..
T Consensus 48 --------------~~~~~~~~~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i---~~ 102 (172)
T 2erx_A 48 --------------KSICTLQITDTTGSHQFPA------MQRLSIS--KGHAFILVYSITSRQSLEELKPIYEQI---CE 102 (172)
T ss_dssp --------------TEEEEEEEEECCSCSSCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHH---HH
T ss_pred --------------CEEEEEEEEECCCchhhHH------HHHHhcc--cCCEEEEEEECcCHHHHHHHHHHHHHH---HH
Confidence 1234688999999877521 1111222 258999999986532 1122222111 22
Q ss_pred Hh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
.. ..++|+++|+||+|+.+...... .....+.. . .+.+++++||++|.|++++
T Consensus 103 ~~~~~~~~pii~v~nK~Dl~~~~~v~~--~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 103 IKGDVESIPIMLVGNKCDESPSREVQS--SEAEALAR---------------------T--WKCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp HHC---CCCEEEEEECGGGGGGCCSCH--HHHHHHHH---------------------H--HTCEEEECBTTTTBSHHHH
T ss_pred HhCCCCCCCEEEEEEccccccccccCH--HHHHHHHH---------------------H--hCCeEEEecCCCCcCHHHH
Confidence 21 14799999999999975432110 01111110 1 1468999999999999999
Q ss_pred HHHHHHHHH
Q 020549 305 FKAVEESAQ 313 (324)
Q Consensus 305 ~~~i~~~~~ 313 (324)
++.|.+.+.
T Consensus 158 ~~~l~~~~~ 166 (172)
T 2erx_A 158 FQELLNLEK 166 (172)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHh
Confidence 999987653
No 118
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=2.8e-19 Score=169.40 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=103.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+|+|++..+.. +...++++ ++.. .+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------v~~~~gtT----~d~~--------------~~~i~---- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTT----RDPV--------------DDEVF---- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC----------C--------------CEEEE----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc------------cCCCCCCc----CCce--------------EEEEE----
Confidence 46899999999999999999999875431 23333332 1100 01111
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh----hh--HHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----AS--GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~--~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
..+..+.+|||||+.++.... .. .......+ ..+|++++++|+..+....+.+
T Consensus 225 ---------------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i--~~ad~vllv~d~~~~~~~~~~~---- 283 (439)
T 1mky_A 225 ---------------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQDQR---- 283 (439)
T ss_dssp ---------------ETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHHHH----
T ss_pred ---------------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH--hhCCEEEEEEeCCCCCCHHHHH----
Confidence 124478899999986531100 00 00011122 2368999999998876554421
Q ss_pred HHHHHHhhcCCCeEEEeeccccCChHh--HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~ 299 (324)
....+...++|+++|+||+|+..... ..++.+.+. . .+ .+..+.+++++||++|.
T Consensus 284 -i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~---~--------------~~-----~~~~~~~~~~~SA~~g~ 340 (439)
T 1mky_A 284 -MAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFR---E--------------KL-----YFIDYSPLIFTSADKGW 340 (439)
T ss_dssp -HHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHH---H--------------HC-----GGGTTSCEEECBTTTTB
T ss_pred -HHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHH---H--------------Hh-----ccCCCCcEEEEECCCCC
Confidence 22345567899999999999986542 111111111 1 00 12346799999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 020549 300 GIEAYFKAVEESAQEFM 316 (324)
Q Consensus 300 gv~~l~~~i~~~~~~~~ 316 (324)
|+++||+.|.+.+....
T Consensus 341 gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 341 NIDRMIDAMNLAYASYT 357 (439)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999998876543
No 119
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.80 E-value=8e-20 Score=155.53 Aligned_cols=173 Identities=14% Similarity=0.141 Sum_probs=97.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+++|++..+...+.+++ . ..+...+ ...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~~-- 72 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------F-ENYTASF-----------------------EID-- 72 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------ESS--
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc-------c-eeEEEEE-----------------------EEC--
Confidence 356889999999999999999999987654322111 0 0000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~ 223 (324)
.....+.||||||+.++.. .... .-..+|++++|+|...... .. ..|...+
T Consensus 73 ----------------~~~~~l~i~Dt~G~~~~~~--~~~~------~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i-- 126 (205)
T 1gwn_A 73 ----------------TQRIELSLWDTSGSPYYDN--VRPL------SYPDSDAVLICFDISRPETLDSVLKKWKGEI-- 126 (205)
T ss_dssp ----------------SSEEEEEEEEECCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred ----------------CEEEEEEEEeCCCcHhhhH--HHHh------hccCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence 1245789999999877521 1100 1134689999999865321 11 2232222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc-cCCCh
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGI 301 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~-~g~gv 301 (324)
... ..+.|+++|+||+|+...... .++.... .. .+..+.+..+.......++++|||+ +|.||
T Consensus 127 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~----~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv 191 (205)
T 1gwn_A 127 -QEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHR---------QT----PVSYDQGANMAKQIGAATYIECSALQSENSV 191 (205)
T ss_dssp -HHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTT---------CC----CCCHHHHHHHHHHHTCSEEEECCTTTCHHHH
T ss_pred -HHH-CCCCCEEEEEechhhccchhhhhhhcccc---------cC----CCCHHHHHHHHHHcCCCEEEEeeeccCCcCH
Confidence 211 247999999999999753211 1000000 00 0000000000011223689999999 68999
Q ss_pred HHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQ 313 (324)
Q Consensus 302 ~~l~~~i~~~~~ 313 (324)
+++|..|.+.+.
T Consensus 192 ~~lf~~l~~~~l 203 (205)
T 1gwn_A 192 RDIFHVATLACV 203 (205)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 120
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.80 E-value=1.1e-19 Score=154.04 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=69.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc--ccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (324)
...++|+|+|++|||||||+++|++. .+...+.+++ ..+... ..+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~--------------~~~~~~----------------~~~~~~ 67 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS--------------GVEVVV----------------APVTIP 67 (208)
T ss_dssp EEEEEEEEC------------------------------------------------C----------------EEEECT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc--------------ceEEEE----------------EEEEEC
Confidence 34578999999999999999999987 4432221111 000000 000000
Q ss_pred ccccChHHHHHHHHHHHHhC--CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 145 LNLFTTKFDEVISLIERRAD--HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
.. ...+.||||||++++.. .... .-..+|++++|+|....... .....++.
T Consensus 68 ------------------~~~~~~~~~l~Dt~G~~~~~~------~~~~--~~~~~d~~i~v~d~~~~~s~-~~~~~~~~ 120 (208)
T 2yc2_C 68 ------------------DTTVSVELFLLDTAGSDLYKE------QISQ--YWNGVYYAILVFDVSSMESF-ESCKAWFE 120 (208)
T ss_dssp ------------------TSSEEEEEEEEETTTTHHHHH------HHST--TCCCCCEEEEEEETTCHHHH-HHHHHHHH
T ss_pred ------------------CcccEEEEEEEECCCcHHHHH------HHHH--HHhhCcEEEEEEECCCHHHH-HHHHHHHH
Confidence 11 34689999999866411 0000 11346999999998654211 11111222
Q ss_pred HHHHHhh---cCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc-
Q 020549 223 ACSILYK---TRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS- 297 (324)
Q Consensus 223 ~~~~~~~---~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~- 297 (324)
.+..... .++|+++|+||+|+.. ..... .+....+.+ . .+.+++++||++
T Consensus 121 ~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 121 LLKSARPDRERPLRAVLVANKTDLPPQRHQVR--LDMAQDWAT---------------------T--NTLDFFDVSANPP 175 (208)
T ss_dssp HHHHHCSCTTSCCEEEEEEECC-------CCC--HHHHHHHHH---------------------H--TTCEEEECCC---
T ss_pred HHHHhhcccccCCcEEEEEECcccchhhccCC--HHHHHHHHH---------------------H--cCCEEEEeccCCC
Confidence 2222222 5799999999999976 32110 011111111 1 136899999999
Q ss_pred CCChHHHHHHHHHHHHHH
Q 020549 298 GAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 298 g~gv~~l~~~i~~~~~~~ 315 (324)
|.|++++|+.|.+.+.+.
T Consensus 176 ~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 176 GKDADAPFLSIATTFYRN 193 (208)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999987653
No 121
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=4e-19 Score=159.58 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCcchhh----hh---hhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549 165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~----~~---~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 237 (324)
..++.||||||+.+... .. .....+..++. ...+++++|+|+...+...+. ...+..+...+.|+++|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~----~~~~~~~~~~~~~~i~V 198 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDA----LKIAKEVDPQGQRTIGV 198 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSSCGGGCHH----HHHHHHHCTTCSSEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc-CCCeEEEEEecCCcchhhhHH----HHHHHHhCCCCCeEEEE
Confidence 36899999999864210 00 12222333332 223466689999876554431 11224445568999999
Q ss_pred eeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 238 FNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 238 ~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
+||+|+.+... ..+..+. .+ .. ....+.+++++||++|.|++++++.|.+..+
T Consensus 199 ~NK~Dl~~~~~~~~~~~~~------~~--------------~~---~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 199 ITKLDLMDEGTDARDVLEN------KL--------------LP---LRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp EECGGGSCTTCCCHHHHTT------CS--------------SC---CTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEccccCCCCchHHHHHhC------Cc--------------Cc---CCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 99999986542 1111110 00 00 0012457999999999999999999987443
No 122
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=3.4e-21 Score=163.46 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=96.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+++|.+|||||||+++|++..+...+..++. . .+ ...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~------~--~~------~~~----------------------- 70 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF------D--NY------SAN----------------------- 70 (204)
Confidence 4668899999999999999999997765432221110 0 00 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~ 223 (324)
+........+.||||||+.++.. .....+ ..+|++++|+|.... +.... .|...+
T Consensus 71 ------------~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l-- 128 (204)
T 3th5_A 71 ------------VMVDGKPVNLGLWDTAGQEDYDR------LRPLSY--PQTDVFLICFSLVSPASFENVRAKWYPEV-- 128 (204)
Confidence 00002245677999999877521 111111 235888888887654 33222 332222
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
... ..++|+++|+||+|+.......+....... ... .......+++ .....+++++||++|.|+++
T Consensus 129 -~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~v--~~~~~~~~~~--------~~~~~~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 129 -RHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKL--TPI--TYPQGLAMAK--------EIGAVKYLECSALTQRGLKT 194 (204)
Confidence 111 127899999999999865322111111000 000 0000111111 11223789999999999999
Q ss_pred HHHHHHHHH
Q 020549 304 YFKAVEESA 312 (324)
Q Consensus 304 l~~~i~~~~ 312 (324)
+|+.|.+.+
T Consensus 195 l~~~l~~~i 203 (204)
T 3th5_A 195 VFDEAIRAV 203 (204)
Confidence 999998754
No 123
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=1e-19 Score=166.32 Aligned_cols=170 Identities=20% Similarity=0.273 Sum_probs=103.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
..|+|+|.+|||||||+|+|++..+. +..+++++ +.++.+.+.-
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-------------i~~~~ftT------------------l~p~~g~v~~----- 202 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-------------IADYHFTT------------------LVPNLGMVET----- 202 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-------------ESSTTSSC------------------CCCCEEEEEC-----
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-------------cccCCccc------------------cCceEEEEEe-----
Confidence 46999999999999999999876432 23334333 1111121110
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh-hhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.+... +..+...+.+.+. .++++++|+|++.. ......+..++..+..
T Consensus 203 -------------~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~--~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~ 267 (342)
T 1lnz_A 203 -------------DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--RTRVIVHVIDMSGLEGRDPYDDYLTINQELSE 267 (342)
T ss_dssp -------------SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH
T ss_pred -------------CCCceEEEecCCCCcccccccchhHHHHHHHHH--hccEEEEEEECCcccccChHHHHHHHHHHHHH
Confidence 1135799999999765311 1223333333332 36899999998652 2222222222222222
Q ss_pred Hh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 227 ~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
+. ..++|+++|+||+|+..... ..+.+. + .+....+++++||+++.|+++|
T Consensus 268 ~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~---~---------------------~l~~~~~v~~iSA~tg~gi~eL 320 (342)
T 1lnz_A 268 YNLRLTERPQIIVANKMDMPEAAE---NLEAFK---E---------------------KLTDDYPVFPISAVTREGLREL 320 (342)
T ss_dssp SCSSTTTSCBCBEEECTTSTTHHH---HHHHHH---H---------------------HCCSCCCBCCCSSCCSSTTHHH
T ss_pred hhhhhcCCCEEEEEECccCCCCHH---HHHHHH---H---------------------HhhcCCCEEEEECCCCcCHHHH
Confidence 22 14799999999999986532 111111 1 1111267999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 305 FKAVEESAQEFME 317 (324)
Q Consensus 305 ~~~i~~~~~~~~~ 317 (324)
+..|.+.+.+.++
T Consensus 321 ~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 321 LFEVANQLENTPE 333 (342)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHhhCcc
Confidence 9999999876554
No 124
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=165.41 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=94.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+|+|.+|||||||+++|++..+.... + ++. +... .+.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-p-------T~~-------~~~~-------------------~~~--- 205 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-P-------TIG-------FNVE-------------------TVE--- 205 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-E-------ETT-------EEEE-------------------EEE---
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-c-------ccc-------eEEE-------------------EEe---
Confidence 45679999999999999999999887653211 0 010 0000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++.. . ....+ ..+|++|+|+|+.....-......+...+..
T Consensus 206 ----------------~~~~~l~i~Dt~G~~~~~~--~----~~~~~--~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~ 261 (329)
T 3o47_A 206 ----------------YKNISFTVWDVGGQDKIRP--L----WRHYF--QNTQGLIFVVDSNDRERVNEAREELMRMLAE 261 (329)
T ss_dssp ----------------ETTEEEEEEECC-----CC--S----HHHHH--TTEEEEEEEEETTCSSSHHHHHHHHHHHHTC
T ss_pred ----------------cCcEEEEEEECCCCHhHHH--H----HHHHh--ccCCEEEEEEECCchHHHHHHHHHHHHHHhh
Confidence 2256789999999877621 1 11122 2368999999986533221111111111111
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....++|+|+|+||+|+.......++...+. ... ......+++++||++|.||+++|+
T Consensus 262 ~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 262 DELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------LHS-LRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp GGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------CTT-CCSSCEEEEECBTTTTBTHHHHHH
T ss_pred hccCCCeEEEEEECccCCcccCHHHHHHHhc---------------------hhh-hhcCCCEEEEEECCCCcCHHHHHH
Confidence 2224799999999999986543222221111 000 001235799999999999999999
Q ss_pred HHHHHHHH
Q 020549 307 AVEESAQE 314 (324)
Q Consensus 307 ~i~~~~~~ 314 (324)
.|.+.+.+
T Consensus 320 ~l~~~l~~ 327 (329)
T 3o47_A 320 WLSNQLRN 327 (329)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987753
No 125
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=7.7e-20 Score=173.46 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=97.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
+.+++|+|+|++|||||||+|+|++..+.. +..+++++ ++.... .+.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~~-------------~i~---- 268 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAI------------VTDLPGTT----RDVVES-------------QLV---- 268 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSC------------CSCCTTCC----HHHHHH-------------EEE----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCccc------------ccCCCCee----EEEEEE-------------EEE----
Confidence 356889999999999999999999976542 34444443 222110 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHH-HHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+..+.||||||+.++. ...... +.+.... ..+|++++|+|+..++..... .++
T Consensus 269 ----------------~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~--~i~--- 325 (462)
T 3geh_A 269 ----------------VGGIPVQVLDTAGIRETS--DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQ--EIY--- 325 (462)
T ss_dssp ----------------ETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHHH--HHH---
T ss_pred ----------------ECCEEEEEEECCccccch--hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHH--HHH---
Confidence 225678999999987641 111111 1122211 347999999999887654431 111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l 304 (324)
..+ ...|+++|+||+|+....... ... .+....+++++||++|.|+++|
T Consensus 326 ~~l--~~~piivV~NK~Dl~~~~~~~----~~~-------------------------~~~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 326 EQV--KHRPLILVMNKIDLVEKQLIT----SLE-------------------------YPENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp HHH--TTSCEEEEEECTTSSCGGGST----TCC-------------------------CCTTCCCEEEEBTTTTBSHHHH
T ss_pred Hhc--cCCcEEEEEECCCCCcchhhH----HHH-------------------------HhccCCcEEEEECCCCCCHHHH
Confidence 222 237999999999998764321 111 1223468999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 305 FKAVEESAQE 314 (324)
Q Consensus 305 ~~~i~~~~~~ 314 (324)
++.|.+.+..
T Consensus 375 ~~~i~~~~~~ 384 (462)
T 3geh_A 375 ETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 126
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=1.5e-20 Score=180.71 Aligned_cols=165 Identities=19% Similarity=0.278 Sum_probs=103.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++++|+++|++|+|||||+++|.+..+..... ++.+ .++.. ..+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~-------------~giT-~~i~~-----------------~~v~---- 47 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA-------------GGIT-QHIGA-----------------FLVS---- 47 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSS-------------CCBC-CCTTS-----------------CCBC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-------------Ccee-EEEeE-----------------EEEE----
Confidence 56789999999999999999999876543211 1111 00000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
+ ..+..+.||||||+++|......+ ...+|++++|+|+.++..+++ ...+..+
T Consensus 48 ~--------------~~g~~i~~iDTPGhe~f~~~~~~~--------~~~aD~vILVVDa~dg~~~qt-----~e~l~~~ 100 (537)
T 3izy_P 48 L--------------PSGEKITFLDTPGHAAFSAMRARG--------TQVTDIVILVVAADDGVMKQT-----VESIQHA 100 (537)
T ss_dssp S--------------SCSSCCBCEECSSSCCTTTSBBSS--------SBSBSSCEEECBSSSCCCHHH-----HHHHHHH
T ss_pred e--------------CCCCEEEEEECCChHHHHHHHHHH--------HccCCEEEEEEECCCCccHHH-----HHHHHHH
Confidence 0 124578899999988763211111 134699999999998876654 2233556
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+|+|+||+|+...... .....+.. .+...+.+....+++++||++|.|+++|++.
T Consensus 101 ~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~------------------~~~~~e~~~~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 101 KDAHVPIVLAINKCDKAEADPE-KVKKELLA------------------YDVVCEDYGGDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp HTTTCCEEECCBSGGGTTTSCC-SSSSHHHH------------------TTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred HHcCCcEEEEEecccccccchH-HHHHHHHh------------------hhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence 6678999999999999753210 00011110 0000002223468999999999999999999
Q ss_pred HHHHHH
Q 020549 308 VEESAQ 313 (324)
Q Consensus 308 i~~~~~ 313 (324)
|...+.
T Consensus 162 I~~l~~ 167 (537)
T 3izy_P 162 TIALAE 167 (537)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 998765
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=5.1e-18 Score=156.50 Aligned_cols=169 Identities=20% Similarity=0.350 Sum_probs=101.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|++|||||||+|+|++..+. +...++++. +.. -+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------~~~~~~~t~-~~~-----------------~~~~~--- 210 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------IASYPFTTR-GIN-----------------VGQFE--- 210 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------EECCTTCSS-CEE-----------------EEEEE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCeee-cee-----------------EEEEE---
Confidence 45678999999999999999999987532 111122210 000 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH--hccCCcEEEEEEcCCCCC--CchhHHHhHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSA--NPMTFMSNMLY 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~ 222 (324)
..+..+.+|||||+.++..+...... .+.+ ....+|.+++|+|+.... .... ....+.
T Consensus 211 ----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~ad~illV~D~s~~~~~~~~~-~~~~~~ 272 (357)
T 2e87_A 211 ----------------DGYFRYQIIDTPGLLDRPISERNEIE-KQAILALRYLGNLIIYIFDPSEHCGFPLEE-QIHLFE 272 (357)
T ss_dssp ----------------ETTEEEEEEECTTTSSSCSTTSCHHH-HHHHHGGGGTCSEEEEEECTTCTTSSCHHH-HHHHHH
T ss_pred ----------------ecCceEEEEeCCCccccchhhhhHHH-HHHHHHHHhcCCEEEEEEeCCccccCCHHH-HHHHHH
Confidence 12456899999998764222111111 1111 123479999999976543 2221 111122
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
.+.... .++|+++|+||+|+.......+. ..+. . ....+++++||++|+|++
T Consensus 273 ~i~~~~-~~~piilV~NK~Dl~~~~~~~~~----~~~~----------------------~-~~~~~~~~iSA~~g~gi~ 324 (357)
T 2e87_A 273 EVHGEF-KDLPFLVVINKIDVADEENIKRL----EKFV----------------------K-EKGLNPIKISALKGTGID 324 (357)
T ss_dssp HHHHHT-TTSCEEEEECCTTTCCHHHHHHH----HHHH----------------------H-HTTCCCEECBTTTTBTHH
T ss_pred HHHHhc-CCCCEEEEEECcccCChHHHHHH----HHHH----------------------H-hcCCCeEEEeCCCCcCHH
Confidence 112211 27999999999999876533211 1110 0 124689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
+|++.|.+.+...
T Consensus 325 ~l~~~i~~~l~~~ 337 (357)
T 2e87_A 325 LVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 128
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.79 E-value=6.4e-20 Score=154.44 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH-hhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl 243 (324)
...+++|||+|+...+. ... ..+++.+.++++||+++...++.....|...+ ... ...++|+++|+||+|+
T Consensus 55 ~~~l~~~Dt~~~~~~~~--~~~---~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l---~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 55 SATIILLDMWENKGENE--WLH---DHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp EEEEEEECCCCC----C--TTG---GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHH---HHHTTTSCCCEEEEEECTTC
T ss_pred EEEEEEEEeccCcchhh--hHH---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHH---HHhhCCCCCeEEEEEechhh
Confidence 34678999999865311 011 11122233445555555544554444443222 222 2347999999999998
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
....... ......+. . ....++++|||++|.||+++|..|.+.+..
T Consensus 127 ~~~r~v~--~~~~~~~a----------------------~-~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 127 VRXREVS--VSEGRAXA----------------------V-VFDXKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp GGGCCSC--HHHHHHHH----------------------H-HTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcccccc--HHHHHHHH----------------------H-HhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence 6532110 00000000 1 123689999999999999999999988753
No 129
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.79 E-value=6.6e-19 Score=166.60 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-----hhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-----MTFMSNMLYACSILYKTRLP-LVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-----~~~~~~~~~~~~~~~~~~~p-~ilv~ 238 (324)
+..+.||||||+++|.. .+...+ ..+|++++|||+..+... ...+ ...+..+...++| +|+|+
T Consensus 94 ~~~~~iiDTPGh~~f~~------~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt---~e~l~~~~~~~v~~iIvvi 162 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVP------NMIGGA--SQADLAVLVISARKGEFETGFEKGGQT---REHAMLAKTAGVKHLIVLI 162 (439)
T ss_pred CeEEEEEECCChHHHHH------HHHhhH--hhCCEEEEEEECCCCccccccCCCchH---HHHHHHHHHcCCCeEEEEe
Confidence 56899999999877621 222222 347999999999987642 1122 2222445557788 89999
Q ss_pred eccccCChH----hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHHHH
Q 020549 239 NKTDVAQHE----FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 239 NK~Dl~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l~~ 306 (324)
||+|+...+ ...+..+++..+.+. + .+. ...+++++||++|.|++++.+
T Consensus 163 NK~Dl~~~~~~~~~~~~i~~~~~~~l~~--------------~-----g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 163 NKMDDPTVNWSNERYEECKEKLVPFLKK--------------V-----GFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ecCCCcccchHHHHHHHHHHHHHHHHHH--------------h-----cccccCCeeEEEeeccCCcccccccc
Confidence 999997532 122222222222211 1 111 146899999999999999655
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=2.7e-19 Score=170.45 Aligned_cols=159 Identities=20% Similarity=0.327 Sum_probs=101.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.+.+|+|+|+||||||||+|+|++..+.. +..+++++ ++.. .+.+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------vs~~~gTT----~d~~--------------~~~i~---- 287 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------VTDIPGTT----RDVI--------------SEEIV---- 287 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------CCCSSCCS----SCSC--------------CEEEE----
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------cCCCCCee----eeeE--------------EEEEe----
Confidence 46889999999999999999999986542 44455444 1110 01010
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCc-chhhhh-hhH-HHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWS-ASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~-~~~-~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
..+..+.||||||+. ++.... ..+ ......+ ..+|++++|+|+.......+. ..+
T Consensus 288 ---------------~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~~--~il--- 345 (482)
T 1xzp_A 288 ---------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEEDR--KIL--- 345 (482)
T ss_dssp ---------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHHH--HHH---
T ss_pred ---------------cCCeEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHHH--HHH---
Confidence 124578999999997 542100 011 1111222 236999999999776543321 111
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCChHH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~gv~~ 303 (324)
..+ .++|+++|+||+|+...... +.+. .+.. ..+++++||++|.|+++
T Consensus 346 ~~l--~~~piivV~NK~DL~~~~~~----~~~~-------------------------~~~~~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 346 ERI--KNKRYLVVINKVDVVEKINE----EEIK-------------------------NKLGTDRHMVKISALKGEGLEK 394 (482)
T ss_dssp HHH--TTSSEEEEEEECSSCCCCCH----HHHH-------------------------HHHTCSTTEEEEEGGGTCCHHH
T ss_pred HHh--cCCCEEEEEECcccccccCH----HHHH-------------------------HHhcCCCcEEEEECCCCCCHHH
Confidence 222 37899999999999753111 1111 1111 35899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
|++.|.+.+.
T Consensus 395 L~~~l~~~~~ 404 (482)
T 1xzp_A 395 LEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHh
Confidence 9999998755
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=2.4e-19 Score=169.76 Aligned_cols=160 Identities=25% Similarity=0.267 Sum_probs=92.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
++|+|+|+||||||||+|+|++..+.. +...++.+ +++. -+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~T----~d~~--------------~~~~~------ 47 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRI--------------YSSAE------ 47 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC---------------------------CE--------------EEECT------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCCc----cceE--------------EEEEE------
Confidence 579999999999999999999876542 22233322 1110 00000
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||+.... ......+...... ..+|+++||+|+..+....+.+. ...+
T Consensus 48 -------------~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~-----~~~l 107 (436)
T 2hjg_A 48 -------------WLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV-----AKIL 107 (436)
T ss_dssp -------------TCSSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-----HHHH
T ss_pred -------------ECCceEEEEECCCCCCcc--hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-----HHHH
Confidence 235689999999986321 1111122221111 34799999999998877655331 2345
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+++|+||+|+..... .. .++. . ....+++++||++|.|+++|++.
T Consensus 108 ~~~~~pvilv~NK~D~~~~~~--~~-~~~~-------------------------~-lg~~~~~~iSA~~g~gv~~L~~~ 158 (436)
T 2hjg_A 108 YRTKKPVVLAVNKLDNTEMRA--NI-YDFY-------------------------S-LGFGEPYPISGTHGLGLGDLLDA 158 (436)
T ss_dssp TTCCSCEEEEEECCCC-------CC-CSSG-------------------------G-GSSCCCEECBTTTTBTHHHHHHH
T ss_pred HHcCCCEEEEEECccCccchh--hH-HHHH-------------------------H-cCCCCeEEEeCcCCCChHHHHHH
Confidence 567899999999999875421 00 0000 0 12237899999999999999999
Q ss_pred HHHHHHH
Q 020549 308 VEESAQE 314 (324)
Q Consensus 308 i~~~~~~ 314 (324)
|.+.+++
T Consensus 159 i~~~l~~ 165 (436)
T 2hjg_A 159 VAEHFKN 165 (436)
T ss_dssp HHHTGGG
T ss_pred HHHhcCc
Confidence 9988764
No 132
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.78 E-value=2e-18 Score=159.09 Aligned_cols=199 Identities=21% Similarity=0.225 Sum_probs=113.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcC----CCCCCccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGIL 142 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~ 142 (324)
.+..+|+|+|++|||||||+++|+......+..+.++..|+......+. - ..+.++.......-+ -.+.++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~-~--l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGS-I--LGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------CHHHHTCTTEEEECCC--CCH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccch-h--ccchhhHHhhccCCCeeEEECCCCccc
Confidence 3567899999999999999999998877777788888777654321100 0 001111000000000 00111111
Q ss_pred ccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
. .++......+..+. ..+.+++||||||+.+... .+ ...+|++++|+|+..+.......
T Consensus 154 ~---~~~~~t~d~i~~~~--~~~~~~iiiDTpGi~~~~~------~~-----~~~aD~vl~V~d~~~~~~~~~l~----- 212 (355)
T 3p32_A 154 G---GVTRATRETVVLLE--AAGFDVILIETVGVGQSEV------AV-----ANMVDTFVLLTLARTGDQLQGIK----- 212 (355)
T ss_dssp H---HHHHHHHHHHHHHH--HTTCCEEEEEECSCSSHHH------HH-----HTTCSEEEEEEESSTTCTTTTCC-----
T ss_pred c---chhHHHHHHHHHHh--hCCCCEEEEeCCCCCcHHH------HH-----HHhCCEEEEEECCCCCccHHHHH-----
Confidence 1 12233333332222 4578999999999755311 11 14579999999986543322111
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh----c-cCceeeecccc
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY----K-NLKSVGVSSVS 297 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~----~-~~~iv~vSA~~ 297 (324)
....++|+++|+||+|+............+..... .+. . ..+++++||++
T Consensus 213 ----~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~---------------------~~~~~~~~~~~~vi~iSA~~ 267 (355)
T 3p32_A 213 ----KGVLELADIVVVNKADGEHHKEARLAARELSAAIR---------------------LIYPREALWRPPVLTMSAVE 267 (355)
T ss_dssp ----TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH---------------------HHSTTCCSCCCCEEEEBGGG
T ss_pred ----HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh---------------------hccccccCCCCceEEEEcCC
Confidence 01134699999999999865433323222221111 111 1 36899999999
Q ss_pred CCChHHHHHHHHHHHHH
Q 020549 298 GAGIEAYFKAVEESAQE 314 (324)
Q Consensus 298 g~gv~~l~~~i~~~~~~ 314 (324)
|.|+++|++.|.+.++.
T Consensus 268 g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 268 GRGLAELWDTVERHRQV 284 (355)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998865
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.78 E-value=4.7e-18 Score=156.67 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=96.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
.|+|+|++|||||||+|+|++..+.. ...+++| .|. ..+.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~-------------~~~~~~T-~d~-----------------~~~~i~------- 222 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKV-------------DTKLFTT-MSP-----------------KRYAIP------- 222 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------------------CCS-----------------CEEEEE-------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------cCCcccc-cCC-----------------EEEEEE-------
Confidence 49999999999999999999875421 1112221 000 001110
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCC-chhHHHhHHHHHHHHh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSAN-PMTFMSNMLYACSILY 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~-~~~~~~~~~~~~~~~~ 228 (324)
..+..+.+|||||+.+..... ....+...+.. ..+|++++|+|+++... ...........+..+.
T Consensus 223 ------------~~g~~v~l~DT~G~i~~lp~~-lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 223 ------------INNRKIMLVDTVGFIRGIPPQ-IVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp ------------ETTEEEEEEECCCBCSSCCGG-GHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred ------------ECCEEEEEEeCCCchhcCCHH-HHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 113568899999974421111 11112222222 45799999999876431 1111111122223333
Q ss_pred hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHH
Q 020549 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..++|+|+|+||+|+.+... .........+.. .+ ....+++++||++|.|+++|++.
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~---------------------~l~~~~~~~~~~SA~~g~gi~~L~~~ 347 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGDL-YKKLDLVEKLSK---------------------ELYSPIFDVIPISALKRTNLELLRDK 347 (364)
T ss_dssp CCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHH---------------------HHCSCEEEEEECBTTTTBSHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCchH-HHHHHHHHHHHH---------------------HhcCCCCcEEEEECCCCcCHHHHHHH
Confidence 35789999999999986431 111111111111 11 12346899999999999999999
Q ss_pred HHHHHHHHHHhh
Q 020549 308 VEESAQEFMETY 319 (324)
Q Consensus 308 i~~~~~~~~~~~ 319 (324)
|.+.+....+.+
T Consensus 348 I~~~l~~~~~~~ 359 (364)
T 2qtf_A 348 IYQLATQLSLEH 359 (364)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHhcccCCCC
Confidence 999887665544
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.5e-18 Score=162.95 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=68.3
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D 242 (324)
..+.||||||+++|.. ..... ..+|++++|+|+.++. ..++.. .+ ..+...+ .|+|+|+||+|
T Consensus 81 ~~i~iiDtPGh~~f~~---------~~~~~~~~~D~~ilVvda~~g~~~~qt~e--~l---~~~~~l~~~~iivv~NK~D 146 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMA---------TMLSGASLMDGAILVIAANEPCPQPQTKE--HL---MALEILGIDKIIIVQNKID 146 (408)
T ss_dssp EEEEEEECSSHHHHHH---------HHHTTCSCCSEEEEEEETTSCSSCHHHHH--HH---HHHHHTTCCCEEEEEECTT
T ss_pred cEEEEEECCCHHHHHH---------HHHHhHhhCCEEEEEEECCCCCCCchhHH--HH---HHHHHcCCCeEEEEEEccC
Confidence 4789999999766511 11222 4579999999999876 444421 12 2223334 47999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
+.+.+......+++..+.+. .+....+++++||++|.|+++|++.|.+.++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 147 LVDEKQAEENYEQIKEFVKG--------------------TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp SSCTTTTTTHHHHHHHHHTT--------------------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHhh--------------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 98765322222222211110 0123578999999999999999999998765
No 135
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.77 E-value=3.6e-18 Score=157.92 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEee-ccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFN-KTD 242 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~N-K~D 242 (324)
+..+.||||||+++|.. .+...+ ..+|++++|+| ..++.++.. ..+..+...++|. |+|+| |+|
T Consensus 59 ~~~i~iiDtPGh~~f~~------~~~~~~--~~aD~ailVvd-~~g~~~qt~-----e~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLK------SLITAL--NISDIAVLCIP-PQGLDAHTG-----ECIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp SSEEEEEECTTTTTCHH------HHHHHH--HTCSEEEEEEC-TTCCCHHHH-----HHHHHHHHTTCCEEEEEECCGGG
T ss_pred CeEEEEEECCChHHHHH------HHHHHH--HHCCEEEEEEc-CCCCcHHHH-----HHHHHHHHcCCCeEEEEEEeccC
Confidence 55799999999988621 222222 44799999999 777765542 1123344567898 99999 999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceee--ecccc---CCChHHHHHHHHHHHHHH
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVG--VSSVS---GAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~--vSA~~---g~gv~~l~~~i~~~~~~~ 315 (324)
+ +.+......+++..+.+.. .....++++ +||++ |.|+++|++.|.+.++..
T Consensus 125 l-~~~~~~~~~~~i~~~l~~~--------------------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 125 T-HMHAIDELKAKLKVITSGT--------------------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp S-CHHHHHHHHHHHHHHTTTS--------------------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhc--------------------CCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 9 6543332222332211100 013468999 99999 999999999999988653
No 136
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.77 E-value=1.9e-18 Score=162.32 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeecccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl 243 (324)
..+.||||||+.+|.. .+... ...+|++++|+|+.++. ..++.. .+. .+...+ .|+|+|+||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~------~~~~~--~~~~D~~ilVvda~~g~~~~qt~e--~l~---~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMT------TMLAG--ASLMDGAILVIAANEPCPRPQTRE--HLM---ALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHH------HHHHC--GGGCSEEEEEEETTSCSSCHHHHH--HHH---HHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHH------HHHhh--hhhCCEEEEEEECCCCCCChhHHH--HHH---HHHHcCCCcEEEEEECccC
Confidence 4689999999866521 11111 13579999999999886 444421 121 222234 478999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.+.+......+++..+.+. ......+++++||++|.|+++|++.|.+.++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEG--------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHh--------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 9865433333333221110 0123578999999999999999999998765
No 137
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.77 E-value=3.3e-18 Score=166.81 Aligned_cols=127 Identities=24% Similarity=0.336 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+.||||||+.+|......+ ...+|++|+|+|+.+++.++++. .+..+...++|+|+|+||+|+..
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~--------~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRG--------GALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSS--------SBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence 468999999998873211110 13479999999999998776532 22445567899999999999975
Q ss_pred hHh--------------HHHHHHhHHHHHHHHhcCccchhhHHHHHHHh---------HHHHhccCceeeeccccCCChH
Q 020549 246 HEF--------------ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLA---------LDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 246 ~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
... .....+.+..... .+.+.+... +..+....+++++||++|.|++
T Consensus 137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~----------ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~ 206 (594)
T 1g7s_A 137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVY----------ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIP 206 (594)
T ss_dssp TCCCCTTCCHHHHHTTSCHHHHHHHHHHHH----------HHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHH
T ss_pred ccccccCCchHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCch
Confidence 210 0011111111100 000111000 0001123589999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQEF 315 (324)
Q Consensus 303 ~l~~~i~~~~~~~ 315 (324)
+|++.|...++..
T Consensus 207 eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 207 ELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHhhcccc
Confidence 9999999988743
No 138
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.77 E-value=4.3e-18 Score=163.03 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh--HHHhHHHHHHHHhhcC-CCeEEEeecc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTR-LPLVLAFNKT 241 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~~~~~~~-~p~ilv~NK~ 241 (324)
...+.||||||+++|. ..+...+ ..+|++|+|+|+..+..... .+......+..+...+ .|+|+|+||+
T Consensus 110 ~~~~~iiDTPG~~~f~------~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 110 RANFTIVDAPGHRDFV------PNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp SCEEEEECCCCCGGGH------HHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CceEEEEECCCcHHHH------HHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 5789999999997762 1222222 34799999999988632110 0011122223344455 4599999999
Q ss_pred ccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549 242 DVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 242 Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~ 303 (324)
|+.+. ....+..+.+..+.+.+ .+ ....+++++||++|.|+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~-------------------g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDI-------------------GFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHc-------------------CCCcccceEEEEeeecCCCccc
Confidence 99873 22222222332221111 11 1247899999999999985
No 139
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=6.3e-19 Score=160.30 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=98.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|.+|+|||||+++|++..+...+..+ + ...+...+ ...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t-------~-~~~~~~~~-----------------------~~~-- 199 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------V-FDNYSANV-----------------------MVD-- 199 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC-------S-EEEEEEEE-----------------------EET--
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc-------c-cceeEEEE-----------------------EEC--
Confidence 45688999999999999999999987654322111 0 00000000 000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh---HHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT---FMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~---~~~~~~~~ 223 (324)
.....+.||||||+.++.. .... .-..+|++++|+|......... .|.. .
T Consensus 200 ----------------~~~~~~~l~Dt~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~ 252 (332)
T 2wkq_A 200 ----------------GKPVNLGLWDTAGLEDYDR--LRPL------SYPQTDVFLICFSLVSPASFHHVRAKWYP---E 252 (332)
T ss_dssp ----------------TEEEEEEEEEECCCGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHH---H
T ss_pred ----------------CEEEEEEEEeCCCchhhhH--HHHH------hccCCCEEEEEEeCCCHHHHHHHHHHHHH---H
Confidence 1234667999999877621 1100 1134699999999865332111 2222 1
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~ 303 (324)
+... ..++|+++|+||+|+.......+...... . ..+.......+.......++++|||++|.|+++
T Consensus 253 ~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 253 VRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKK-------L-----TPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 319 (332)
T ss_dssp HHHH-CTTSCEEEEEECHHHHTCHHHHHHHHHTT-------C-----CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHH
T ss_pred HHhh-CCCCcEEEEEEchhcccccchhhhccccc-------c-----ccccHHHHHHHHHHcCCcEEEEecCCCCcCHHH
Confidence 1221 13799999999999976532211111000 0 000000000001112234899999999999999
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
+|+.|.+.+.
T Consensus 320 l~~~l~~~~~ 329 (332)
T 2wkq_A 320 VFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=1.2e-18 Score=145.36 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC---CchhHHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA---NPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 241 (324)
...+.+|||||++++.. ... .++. .++++++|+|.+... .....|...+ .. ...+.|+++|+||+
T Consensus 55 ~~~~~i~Dt~G~~~~~~--~~~----~~~~--~~~~~i~v~d~~~~~~s~~~~~~~~~~~---~~-~~~~~piilv~nK~ 122 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYS--THP----HFMT--QRALYLAVYDLSKGQAEVDAMKPWLFNI---KA-RASSSPVILVGTHL 122 (184)
T ss_dssp -CEEEEEEECSHHHHHT--TSH----HHHH--HSEEEEEEEEGGGCHHHHHTHHHHHHHH---HH-HCTTCEEEEEEECG
T ss_pred ceEEEEEecCCCHHHHH--hhH----HHcc--CCcEEEEEEeCCcchhHHHHHHHHHHHH---Hh-hCCCCcEEEEEECC
Confidence 56789999999877622 111 1111 246777888875542 2222332211 11 12478999999999
Q ss_pred ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc----eeeeccccCC-ChHHHHHHHHHHHHHHH
Q 020549 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK----SVGVSSVSGA-GIEAYFKAVEESAQEFM 316 (324)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----iv~vSA~~g~-gv~~l~~~i~~~~~~~~ 316 (324)
|+.+........... ...+ + ... +.+ ++++||++|. |+++|++.|.+.+....
T Consensus 123 Dl~~~~~~~~~~~~~---~~~~----------~--------~~~-~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 123 DVSDEKQRKACMSKI---TKEL----------L--------NKR-GFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp GGCCHHHHHHHHHHH---HHHT----------T--------TCT-TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred CcccchhhHHHHHHH---HHHH----------H--------Hhc-CCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 998754322111111 0000 0 001 233 8999999996 99999999998876543
No 141
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=1.4e-18 Score=167.16 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=98.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.+.++|+|+|.+|||||||+++|++..+.... +++. ..+ +.+.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~--------~T~~-~~~-------------------------~~~~--- 362 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI--------PTVG-FNV-------------------------ETVT--- 362 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCC--------CCSS-EEE-------------------------EEEE---
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcC--------Cccc-eeE-------------------------EEEE---
Confidence 34579999999999999999999987643210 0110 000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~ 225 (324)
..+..+.||||||+.++.. ... .++ ..+|++|+|+|+.....-.. ....+. .+.
T Consensus 363 ----------------~~~~~~~l~Dt~G~~~~~~--~~~----~~~--~~ad~~i~V~D~~~~~s~~~-~~~~~~~~~~ 417 (497)
T 3lvq_E 363 ----------------YKNVKFNVWDVGGQDKIRP--LWR----HYY--TGTQGLIFVVDCADRDRIDE-ARQELHRIIN 417 (497)
T ss_dssp ----------------SSSCEEEEEEECCCGGGSG--GGG----GGG--TTCCEEEEEEETTCGGGHHH-HHHHHHHHHT
T ss_pred ----------------eCCEEEEEEECCCcHHHHH--HHH----HHh--ccCCEEEEEEECcchhHHHH-HHHHHHHHhh
Confidence 2357899999999877622 111 111 34699999999876422111 111111 111
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....++|+|+|+||+|+.......++...+. ... ......+++++||++|.||+++|
T Consensus 418 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 418 DREMRDAIILIFANKQDLPDAMKPHEIQEKLG---------------------LTR-IRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp SGGGTTCEEEEEEECCSSSSCCCHHHHHHHTT---------------------CTT-CCSSCEEEEECBTTTTBTHHHHH
T ss_pred hhhcCCCcEEEEEECCCCCcCCCHHHHHHHhc---------------------hhh-hhcCCeEEEEEECCCCCCHHHHH
Confidence 11225799999999999976432211111110 000 00123579999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 306 KAVEESAQEFM 316 (324)
Q Consensus 306 ~~i~~~~~~~~ 316 (324)
+.|.+.+....
T Consensus 476 ~~l~~~~~~~~ 486 (497)
T 3lvq_E 476 TWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHCC---
T ss_pred HHHHHHHHhcC
Confidence 99998875443
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=7.7e-19 Score=154.80 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=99.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+|+|++|||||||+|+|++...... ...+..++.+.. .+.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~------------~~~~~~~t~~~~-----------------~~~~~--- 67 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFES------------KLGSQTLTKTCS-----------------KSQGS--- 67 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCC------------CTTSCCCCCSCE-----------------EEEEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccc------------CCCCCceeeeeE-----------------EEEEE---
Confidence 4568899999999999999999998753211 000100000000 00010
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHH---HHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA---IITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~---~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
..+.++.||||||+.++. ..... .+.+.+.. ..+|++|+|+|+.. +.....+. +
T Consensus 68 ----------------~~~~~i~iiDTpG~~~~~--~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~--~ 126 (260)
T 2xtp_A 68 ----------------WGNREIVIIDTPDMFSWK--DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQA--A 126 (260)
T ss_dssp ----------------ETTEEEEEEECCGGGGSS--CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHH--H
T ss_pred ----------------eCCCEEEEEECcCCCCCC--CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHH--H
Confidence 225679999999988762 22211 22332222 35799999999975 44443221 1
Q ss_pred HHHHHHhh--cCCCeEEEee-ccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549 222 YACSILYK--TRLPLVLAFN-KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (324)
Q Consensus 222 ~~~~~~~~--~~~p~ilv~N-K~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g 298 (324)
..+..+.. ...|.++|+| |+|+.... ...++.... ......+....+. .+..+.+ +++||++|
T Consensus 127 ~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~---------~~~~~~~~~~~~~---~~~~~~~-~~~SA~~~ 192 (260)
T 2xtp_A 127 QRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSD---------NKALSKLVAACGG---RICAFNN-RAEGSNQD 192 (260)
T ss_dssp HHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCC---------CHHHHHHHHHTTT---CEEECCT-TCCHHHHH
T ss_pred HHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcc---------hHHHHHHHHHhCC---eEEEecC-cccccccH
Confidence 11122211 1567888887 99998542 222111000 0000001111110 0001222 89999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q 020549 299 AGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 299 ~gv~~l~~~i~~~~~~~~ 316 (324)
.|++++|..|.+.++..+
T Consensus 193 ~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 193 DQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999999998755
No 143
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.76 E-value=8.2e-21 Score=160.54 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=89.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|.+|||||||+++|++..+...... +...+... ..+...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~----------------~~~~~~-- 78 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS--------------TIGVDFKI----------------RTIELD-- 78 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHH--------------HHCCSEEE----------------EEEEET--
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--------------cccceEEE----------------EEEEEC--
Confidence 3468999999999999999999988765432110 00000000 000000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++...... . -..+|++++|+|....... .....++..+..
T Consensus 79 ----------------~~~~~~~i~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~ 133 (199)
T 3l0i_B 79 ----------------GKTIKLQIWDTAGQERFRTITSS------Y--YRGAHGIIVVYDVTDQESF-NNVKQWLQEIDR 133 (199)
T ss_dssp ----------------TEEEEEEEECCTTCTTCCCCSCC----------CCCSEEEECC-CCCSHHH-HHHHHHHHHHHS
T ss_pred ----------------CEEEEEEEEECCCcHhHHHHHHH------H--hhcCCEEEEEEECCCHHHH-HHHHHHHHHHHH
Confidence 11357899999998775211111 0 1346899999998763211 111111222222
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....++|+++|+||+|+....... ......+. . ..+.+++++||++|.||+++|.
T Consensus 134 ~~~~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 134 YASENVNKLLVGNKCDLTTKKVVD--YTTAKEFA----------------------D-SLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp CC-CCSEEEEC-CCSSCC--CCCC--SCC-CHHH----------------------H-TTTCCBCCCCC---HHHHHHHH
T ss_pred hccCCCCEEEEEECccCCccccCC--HHHHHHHH----------------------H-HcCCeEEEEECCCCCCHHHHHH
Confidence 223478999999999997543210 00111110 1 1246899999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.|.+.+.
T Consensus 189 ~l~~~l~ 195 (199)
T 3l0i_B 189 TMAAEIK 195 (199)
T ss_dssp HHTTTTT
T ss_pred HHHHHHH
Confidence 9987653
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=7.8e-19 Score=167.11 Aligned_cols=160 Identities=25% Similarity=0.259 Sum_probs=94.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+|+|++|||||||+|+|++..+.. +...++.+ ++.. .+...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------v~~~~g~t----~~~~--------------~~~~~----- 67 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRI--------------YSSAE----- 67 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------CE--------------EEECT-----
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcc----eeEE--------------EEEEE-----
Confidence 5689999999999999999999875542 22222222 1100 00000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
..+..+.+|||||+... .......+...... ..+|+++||+|+..++...+.+. +..
T Consensus 68 --------------~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l-----~~~ 126 (456)
T 4dcu_A 68 --------------WLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV-----AKI 126 (456)
T ss_dssp --------------TCSSCCEEECCCC--------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHH-----HHH
T ss_pred --------------ECCceEEEEECCCCCCc--chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHH-----HHH
Confidence 23668999999996531 11112222222211 23799999999998887776442 244
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
+...++|+++|+||+|+..... ... ++. .....+++++||++|.|+++|++
T Consensus 127 l~~~~~pvilV~NK~D~~~~~~--~~~-e~~--------------------------~lg~~~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 127 LYRTKKPVVLAVNKLDNTEMRA--NIY-DFY--------------------------SLGFGEPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp HTTCCSCEEEEEECC-----------C-CSG--------------------------GGSSSSEEECCTTTCTTHHHHHH
T ss_pred HHHcCCCEEEEEECccchhhhh--hHH-HHH--------------------------HcCCCceEEeecccccchHHHHH
Confidence 5667899999999999874321 011 110 01234678999999999999999
Q ss_pred HHHHHHH
Q 020549 307 AVEESAQ 313 (324)
Q Consensus 307 ~i~~~~~ 313 (324)
.+.+.++
T Consensus 178 ~i~~~l~ 184 (456)
T 4dcu_A 178 AVAEHFK 184 (456)
T ss_dssp HHHTTGG
T ss_pred HHHhhcc
Confidence 9988764
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=2.9e-18 Score=152.42 Aligned_cols=87 Identities=9% Similarity=0.120 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCC-CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHH
Q 020549 198 PTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS 276 (324)
Q Consensus 198 ~d~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 276 (324)
+|+++|++++.. ++...+.. .+..+.. ++|+|+|+||+|+..........+.+.....
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~-----~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~--------------- 174 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIE-----FMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ--------------- 174 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHH-----HHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH---------------
T ss_pred eeEEEEEecCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH---------------
Confidence 468888886544 55555422 2233444 8999999999999887654433333321110
Q ss_pred HHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 277 ~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
..+.+++++||++++|++++++.|.+.+|
T Consensus 175 --------~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 175 --------EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp --------HTTCCCCCC-----------CHHHHHTCS
T ss_pred --------HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 13578999999999999999999987654
No 146
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=169.31 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-----CchhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-----NPMTFMSNMLYACSILYKTRLP-LVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-----~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 238 (324)
+..+.||||||++++.. .+.. ....+|++|+|||+..+. .....+. ..+..+...++| +|+|+
T Consensus 244 ~~~~~iiDTPG~e~f~~------~~~~--~~~~aD~~llVVDa~~g~~e~~~~~~~qt~---e~l~~~~~lgi~~iIVVv 312 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVP------NAIM--GISQADMAILCVDCSTNAFESGFDLDGQTK---EHMLLASSLGIHNLIIAM 312 (611)
T ss_dssp SCEEEEEECCSSSCHHH------HHTT--TSSCCSEEEEEEECSHHHHHTTCCTTSHHH---HHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEECCCCcccHH------HHHH--HHhhcCceEEEEECCCCcccccchhhhHHH---HHHHHHHHcCCCeEEEEE
Confidence 56899999999877511 1111 114579999999998641 1112222 222344455655 89999
Q ss_pred eccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHH
Q 020549 239 NKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 239 NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l 304 (324)
||+|+++. ....+....+..+...+ .+ ....+++++||++|.||+++
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~-------------------g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDI-------------------GFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGCEEEECCTTTCTTTSSC
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhh-------------------cccccCccEEeeecccCCCcccc
Confidence 99999872 22222222332221111 11 12478999999999999876
No 147
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.75 E-value=5e-18 Score=155.51 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=112.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++.+|+++|++|+|||||+++|++.....++.+.++..|+..+...+.. . .+ ...++.+...+++.+++...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i-l--~d----~~~~~~~~~~~~~~i~~~~~ 126 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI-L--GD----KTRMNDLARAEAAFIRPVPS 126 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce-e--cc----cchHHhhccCCCceeecCcc
Confidence 46788999999999999999999988777777888887777543221110 0 00 01112223333333322110
Q ss_pred --ccChHHHHHHHHHH-HHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 147 --LFTTKFDEVISLIE-RRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 147 --~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
.+..........+. ....+.+++||||||+.++.. .+ ...+|++++|+|+..+..... + ..
T Consensus 127 ~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------~~-----~~~aD~vl~Vvd~~~~~~~~~-l---~~- 190 (341)
T 2p67_A 127 SGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET------EV-----ARMVDCFISLQIAGGGDDLQG-I---KK- 190 (341)
T ss_dssp -----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH------HH-----HTTCSEEEEEECC------CC-C---CH-
T ss_pred ccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH------HH-----HHhCCEEEEEEeCCccHHHHH-H---HH-
Confidence 01112222222221 124578999999999876411 11 246799999999865422111 0 00
Q ss_pred HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc------cCceeeecccc
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK------NLKSVGVSSVS 297 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~iv~vSA~~ 297 (324)
...++|.++|+||+|+............+.... ..+. ..+++++||++
T Consensus 191 ----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l----------------------~~~~~~~~~~~~~vi~iSA~~ 244 (341)
T 2p67_A 191 ----GLMEVADLIVINKDDGDNHTNVAIARHMYESAL----------------------HILRRKYDEWQPRVLTCSALE 244 (341)
T ss_dssp ----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHH----------------------HHSCCSBTTBCCEEEECBGGG
T ss_pred ----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHH----------------------HhccccccCCCCcEEEeeCCC
Confidence 112468899999999987543322222222110 1111 35789999999
Q ss_pred CCChHHHHHHHHHHHH
Q 020549 298 GAGIEAYFKAVEESAQ 313 (324)
Q Consensus 298 g~gv~~l~~~i~~~~~ 313 (324)
|.|+++|++.|.+.++
T Consensus 245 g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 245 KRGIDEIWHAIIDFKT 260 (341)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998775
No 148
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=153.41 Aligned_cols=198 Identities=18% Similarity=0.185 Sum_probs=104.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCC--------CC
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGP--------NG 139 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~ 139 (324)
.+.+|+|+|+||||||||+|+|++.....++.+.++..|+...... + ..+.....|..++..+ .+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~-g------~~l~d~~rm~~~~~~~~~~v~~~~~~ 145 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG-G------SLLGDKTRMTELSRDMNAYIRPSPTR 145 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTTEEEECC---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcC-c------chhchHHHHHHhcCCCCEEEEecCCc
Confidence 4788999999999999999999998777777888888877543210 0 0000001111111111 01
Q ss_pred cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHh
Q 020549 140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN 219 (324)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~ 219 (324)
|.++ .........+..+. ..+.+++|+||||+.... ..+ ...+|++++|+|+..+.....
T Consensus 146 ~~lg---g~tr~~~~~~~~~~--~~~~~~iliDT~Gi~~~~------~~l-----~~~~d~vl~V~d~~~~~~~~~---- 205 (349)
T 2www_A 146 GTLG---GVTRTTNEAILLCE--GAGYDIILIETVGVGQSE------FAV-----ADMVDMFVLLLPPAGGDELQG---- 205 (349)
T ss_dssp ---------CTTHHHHHHHHH--HTTCSEEEEECCCC--CH------HHH-----HTTCSEEEEEECCC-----------
T ss_pred cccc---cchHHHHHHHHhhc--cCCCCEEEEECCCcchhh------hhH-----HhhCCEEEEEEcCCcchhHHH----
Confidence 1110 01111111111111 357899999999975431 111 235799999999876532111
Q ss_pred HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccC
Q 020549 220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSG 298 (324)
Q Consensus 220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g 298 (324)
+. . .-...|.++|+||+|+.+..........+. ..+. ..... .....+++++||++|
T Consensus 206 -i~--~--~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~---~~l~--------------~~~~~a~~~~~~vi~iSA~~g 263 (349)
T 2www_A 206 -IK--R--GIIEMADLVAVTKSDGDLIVPARRIQAEYV---SALK--------------LLRKRSQVWKPKVIRISARSG 263 (349)
T ss_dssp ----------CCSCSEEEECCCSGGGHHHHHHHHHHHH---HHHT--------------TCC-----CCCEEEECCTTTC
T ss_pred -hH--H--HHHhcCCEEEEeeecCCCchhHHHHHHHHH---HHHH--------------hcCccccCCCceEEEEecCCC
Confidence 10 0 113578999999999975432211111111 1110 00000 001357899999999
Q ss_pred CChHHHHHHHHHHHHH
Q 020549 299 AGIEAYFKAVEESAQE 314 (324)
Q Consensus 299 ~gv~~l~~~i~~~~~~ 314 (324)
.|+++|++.|.+.++.
T Consensus 264 ~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 264 EGISEMWDKMKDFQDL 279 (349)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 149
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.75 E-value=6.1e-19 Score=172.34 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-------CchhHHHhHHHHHHHHhhcCCC-eEE
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LVL 236 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~~~~p-~il 236 (324)
+..+.||||||+++|......+. ..+|++|+|||+..+. ..++. ..+..+...++| +|+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~--------~~aD~alLVVDa~~g~~e~gi~~~~qt~-----e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGA--------SSADFAVLVVDSSQNNFERGFLENGQTR-----EHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEEECCC---------------CCSEEEEEECCSSTTSCSCSSHH-----HHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHHHHHHHHH--------hhCCEEEEEEECCCCccccccccchHHH-----HHHHHHHHcCCCeEEE
Confidence 56889999999988732111111 2368999999998753 33332 222345567787 889
Q ss_pred EeeccccCC--hHhHHHHHHhHHHHH-HHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChH----------
Q 020549 237 AFNKTDVAQ--HEFALEWMQDFEVFQ-AAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE---------- 302 (324)
Q Consensus 237 v~NK~Dl~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~---------- 302 (324)
|+||+|++. ..........+..+. +.+ .+ ....+++++||++|.||+
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~-------------------g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w 381 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMV-------------------GFKTSNVHFVPISAISGTNLIQKDSSDLYKW 381 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTS-------------------CCCGGGEEEEEECSSSCSSSCSCCCCGGGGT
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhh-------------------CCCccceEEEEEecccCcccccccccccccc
Confidence 999999986 333332333332111 000 00 123589999999999998
Q ss_pred ----HHHHHHHHHHH
Q 020549 303 ----AYFKAVEESAQ 313 (324)
Q Consensus 303 ----~l~~~i~~~~~ 313 (324)
.|++.|...++
T Consensus 382 ~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 382 YKGPTLLSALDQLVP 396 (592)
T ss_dssp CCSCCHHHHHHTSCC
T ss_pred cchHHHHHHHHhhcc
Confidence 78888876543
No 150
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=4.5e-18 Score=158.99 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
...+.||||||+++|.. .+... ...+|++++|+|+.++...++. ..+..+...++| +|+|+||+|+
T Consensus 65 ~~~~~iiDtpG~~~f~~------~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVK------NMITG--TAPLDGCILVVAANDGPMPQTR-----EHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SCEEEEEECSSHHHHHH------HHHHT--SSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHH------HHHhh--HhhCCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCeEEEEEECccc
Confidence 57899999999877511 12111 2457999999999998765542 122344456889 5899999999
Q ss_pred CChH-hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC----------hHHHHHHHHHH
Q 020549 244 AQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG----------IEAYFKAVEES 311 (324)
Q Consensus 244 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g----------v~~l~~~i~~~ 311 (324)
.+.. ......+++..+.+.. .+. ...+++++||++|.| +++|++.|.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 132 VQDSEMVELVELEIRELLTEF-------------------GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp CSCHHHHHHHHHHHHHHHHHT-------------------TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc-------------------CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 8532 2222222232222111 010 136899999999875 88999999887
Q ss_pred HH
Q 020549 312 AQ 313 (324)
Q Consensus 312 ~~ 313 (324)
++
T Consensus 193 ~p 194 (397)
T 1d2e_A 193 IP 194 (397)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 151
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.75 E-value=1.7e-18 Score=168.03 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=94.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+++|.+|||||||+++|++..+.....+++ +.+......+.+ + .+...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~-g~~~~~~~~~~~-----~------------------~v~~~-- 92 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTH-GLNVVTKQAPNI-----K------------------GLEND-- 92 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGS-----G------------------GGTTC--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ceEEEEeccccc-----c------------------ceeec--
Confidence 456899999999999999999999987654332222 000000000000 0 00000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
. ......+.||||||++++.. .... .+ ..+|++++|+|++.. .....|...+ ..
T Consensus 93 ---~-----------~~~~~~~~i~Dt~G~e~~~~--~~~~----~l--~~~d~ii~V~D~s~~-~~~~~~~~~l---~~ 146 (535)
T 3dpu_A 93 ---D-----------ELKECLFHFWDFGGQEIMHA--SHQF----FM--TRSSVYMLLLDSRTD-SNKHYWLRHI---EK 146 (535)
T ss_dssp ---S-----------TTTTCEEEEECCCSCCTTTT--TCHH----HH--HSSEEEEEEECGGGG-GGHHHHHHHH---HH
T ss_pred ---C-----------CCceEEEEEEECCcHHHHHH--HHHH----Hc--cCCcEEEEEEeCCCc-hhHHHHHHHH---HH
Confidence 0 02257899999999887632 1111 11 236899999998654 3333443332 22
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
. ..+.|+|+|+||+|+....... .+....+. . ..+.+++++||++|.||++|+.
T Consensus 147 ~-~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 147 Y-GGKSPVIVVMNKIDENPSYNIE--QKKINERF----------------------P-AIENRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp H-SSSCCEEEEECCTTTCTTCCCC--HHHHHHHC----------------------G-GGTTCEEECCC-----CTTHHH
T ss_pred h-CCCCCEEEEEECCCcccccccC--HHHHHHHH----------------------H-hcCCceEEEecCcccCHHHHHH
Confidence 2 2369999999999997643210 01111000 0 1135799999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 020549 307 AVEESAQEFMETY 319 (324)
Q Consensus 307 ~i~~~~~~~~~~~ 319 (324)
.|.+.+...+..+
T Consensus 201 ~l~~~~~~~~~~~ 213 (535)
T 3dpu_A 201 SLKSAVLHPDSIY 213 (535)
T ss_dssp HHHHHHTCTTSGG
T ss_pred HHHHHHhcccchh
Confidence 9999886644433
No 152
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=146.91 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=57.5
Q ss_pred CcEEEEEEcCCCC----CCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhH
Q 020549 198 PTVVTYVVDTPRS----ANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTL 273 (324)
Q Consensus 198 ~d~iv~vvD~~~~----~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 273 (324)
+|++++|+|.... +.....|...+. ......++|+++|+||+|+...... +....+.
T Consensus 163 ad~vilV~D~t~~~~~s~~~~~~~l~~i~--~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~------------- 223 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLY--NQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFA------------- 223 (255)
T ss_dssp CCEEEEEEECBC----CHHHHHHHHHHHH--HHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHH-------------
T ss_pred CCEEEEEEECCCCchhhHHHHHHHHHHHH--HHhccCCCCEEEEEEcccccccHHH----HHHHHHH-------------
Confidence 6999999998764 222233432221 1223457999999999999765432 1222111
Q ss_pred HHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
....+.+++++||++|.||+++|+.|.+.+.
T Consensus 224 ---------~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 224 ---------LSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ---------HTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------HhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 1112568999999999999999999988763
No 153
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=9.2e-18 Score=143.58 Aligned_cols=120 Identities=20% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|++|||||||+++|++..+... ...+..+...+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----------~~~~~~~~~~~--------------------------- 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------VVSQEPLSAAD--------------------------- 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----------CCCSSCEEETT---------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----------eeecCceEEEE---------------------------
Confidence 4568899999999999999999998865421 11111111000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCC---CCCCchhHHHhHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTP---RSANPMTFMSNML 221 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~---~~~~~~~~~~~~~ 221 (324)
.....+.||||||+.++. . .+..+++. ..+|++++|+|+. .++.....|...+
T Consensus 52 ----------------~~~~~~~l~Dt~G~~~~~--~----~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~ 109 (218)
T 1nrj_B 52 ----------------YDGSGVTLVDFPGHVKLR--Y----KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 109 (218)
T ss_dssp ----------------GGGSSCEEEECCCCGGGT--H----HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred ----------------eeCceEEEEECCCcHHHH--H----HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence 014688999999997762 1 12222222 2358999999988 3333333332111
Q ss_pred HHHHHH---hhcCCCeEEEeeccccCChHh
Q 020549 222 YACSIL---YKTRLPLVLAFNKTDVAQHEF 248 (324)
Q Consensus 222 ~~~~~~---~~~~~p~ilv~NK~Dl~~~~~ 248 (324)
+... ...++|+++|+||+|+.....
T Consensus 110 --~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 110 --LSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp --HHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred --HhcccccccCCCCEEEEEEchHhcccCC
Confidence 1111 235899999999999987643
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=1.4e-17 Score=160.36 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.+|.. ...+.+ ..+|++|+|+|+..+...++. ..+..+...++|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~allVvDa~~g~~~~t~-----~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTE------DTYRTL--TAVDSALMVIDAAKGVEPRTI-----KLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCH------HHHHGG--GGCSEEEEEEETTTCSCHHHH-----HHHHHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCEEEEEeCCCCc
Confidence 56889999999988622 122222 346999999999998766542 22244556789999999999997
Q ss_pred ChH
Q 020549 245 QHE 247 (324)
Q Consensus 245 ~~~ 247 (324)
...
T Consensus 148 ~~~ 150 (528)
T 3tr5_A 148 TRP 150 (528)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.75 E-value=6.5e-18 Score=158.40 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
...+.||||||+++|. ..+...+ ..+|++++|+|+.++...+. ...+..+...++| +|+|+||+|+
T Consensus 74 ~~~~~iiDtpG~~~f~------~~~~~~~--~~aD~~ilVvda~~g~~~qt-----~~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 74 KRHYSHVDCPGHADYI------KNMITGA--AQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SCEEEEEECCCSGGGH------HHHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHH------HHHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCEEEEEEECccc
Confidence 5789999999988762 1222222 35799999999998876543 1122344456889 7899999999
Q ss_pred CCh-HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCC------------------hHH
Q 020549 244 AQH-EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAG------------------IEA 303 (324)
Q Consensus 244 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~g------------------v~~ 303 (324)
... +.......++..+.+.+ .+ ....+++++||++|.| +++
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~ 201 (405)
T 2c78_A 141 VDDPELLDLVEMEVRDLLNQY-------------------EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWE 201 (405)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT-------------------TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHh-------------------cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHH
Confidence 853 22222222222222110 00 0137899999999987 788
Q ss_pred HHHHHHHHHH
Q 020549 304 YFKAVEESAQ 313 (324)
Q Consensus 304 l~~~i~~~~~ 313 (324)
|++.|.+.++
T Consensus 202 Ll~~l~~~lp 211 (405)
T 2c78_A 202 LLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHhhcC
Confidence 8888877665
No 156
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=5.4e-18 Score=153.12 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=98.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...+|+++|.+|||||||+++|++..... +...+.+| ++... +...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------~~~~~~~T-i~~~~-----------------~~~~---- 47 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF------------DTRRLGAT-IDVEH-----------------SHLR---- 47 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTG------------GGGGCCCC-CSEEE-----------------EEEE----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc------------cccCcCCc-cceEE-----------------EEEE----
Confidence 34789999999999999999998873321 11111111 11000 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhH-HHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~ 224 (324)
+ .....+.||||||++++. .... ......+ ..+|++++|+|+.... .....|...+..+
T Consensus 48 ~--------------~~~~~l~i~Dt~G~~~~~--~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l 109 (307)
T 3r7w_A 48 F--------------LGNMTLNLWDCGGQDVFM--ENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDIEIFAKALKQL 109 (307)
T ss_dssp E--------------TTTEEEEEEEECCSHHHH--HHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHHHHHHHHHHHH
T ss_pred e--------------CCceEEEEEECCCcHHHh--hhhhhhHHHHHh--ccCCEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence 0 124678999999987751 1100 0111111 3469999999987643 2223343333222
Q ss_pred HHHhhcCCCeEEEeeccccCChHhHHHHH----HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc--cCceeeeccccC
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHEFALEWM----QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVGVSSVSG 298 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~iv~vSA~~g 298 (324)
.. ...++|+++|+||+|+...+...... .....+. ..++ ..+++++||++
T Consensus 110 ~~-~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~----------------------~~~g~~~~~~~~tSa~~- 165 (307)
T 3r7w_A 110 RK-YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS----------------------SEFGFPNLIGFPTSIWD- 165 (307)
T ss_dssp HH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH----------------------HTTTCCSCEEEECCTTS-
T ss_pred HH-hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH----------------------HHcCCCCeEEEEeeecC-
Confidence 11 13479999999999999854332111 1111111 1122 37899999999
Q ss_pred CChHHHHHHHHHHH
Q 020549 299 AGIEAYFKAVEESA 312 (324)
Q Consensus 299 ~gv~~l~~~i~~~~ 312 (324)
.|+.++|..+...+
T Consensus 166 ~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 166 ESLYKAWSQIVCSL 179 (307)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHH
Confidence 88999988887654
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.74 E-value=4.1e-19 Score=169.28 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=100.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++++|+++|++|+|||||+++|.+..+..+... +. +.++. .....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~-------GI-------T~~i~------------------~~~v~--- 47 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG-------GI-------TQHIG------------------AYHVE--- 47 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC-------CC-------CCCSS------------------CCCCC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC-------Ce-------eEeEE------------------EEEEE---
Confidence 567899999999999999999998655432110 00 00000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
..+..+.||||||+.+|......+ ...+|++++|+|+.++..+++. ..+..+
T Consensus 48 ---------------~~~~~i~~iDTPGhe~f~~~~~~~--------~~~aD~aILVVda~~g~~~qT~-----e~l~~~ 99 (501)
T 1zo1_I 48 ---------------TENGMITFLDTPGHAAFTSMRARG--------AQATDIVVLVVAADDGVMPQTI-----EAIQHA 99 (501)
T ss_dssp ---------------TTSSCCCEECCCTTTCCTTSBCSS--------SBSCSSEEEEEETTTBSCTTTH-----HHHHHH
T ss_pred ---------------ECCEEEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEeecccCccHHHH-----HHHHHH
Confidence 124578899999988873211111 1347999999999998776652 222445
Q ss_pred hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
...++|+|+|+||+|+...... .....+. .. +...+.+....+++++||++|.|+++|++.
T Consensus 100 ~~~~vPiIVviNKiDl~~~~~~-~v~~~l~-----------~~-------~~~~~~~~~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 100 KAAQVPVVVAVNKIDKPEADPD-RVKNELS-----------QY-------GILPEEWGGESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp HHTTCCEEEEEECSSSSTTCCC-CTTCCCC-----------CC-------CCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred HhcCceEEEEEEeccccccCHH-HHHHHHH-----------Hh-------hhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence 5678999999999999753210 0111100 00 000001222468999999999999999999
Q ss_pred HHH
Q 020549 308 VEE 310 (324)
Q Consensus 308 i~~ 310 (324)
|..
T Consensus 161 I~~ 163 (501)
T 1zo1_I 161 ILL 163 (501)
T ss_dssp TTT
T ss_pred hhh
Confidence 875
No 158
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=7.5e-19 Score=164.67 Aligned_cols=164 Identities=22% Similarity=0.218 Sum_probs=97.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|+|||||+|+|++..+.. +...++++ .+... ....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------~~~~~gtT-~d~~~-----------------~~~~--- 78 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------VSDYAGTT-TDPVY-----------------KSME--- 78 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------------------CCCCE-----------------EEEE---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------cCCCCCee-eeeEE-----------------EEEE---
Confidence 456789999999999999999999876532 11111111 00000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
+ .....+.||||||+.++..... ........+ ..+|++++|+|+ +..... . ..+.
T Consensus 79 -~--------------~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~--~---~~l~ 134 (423)
T 3qq5_A 79 -L--------------HPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYE--D---DVVN 134 (423)
T ss_dssp -E--------------TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHH--H---HHHH
T ss_pred -E--------------CCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHH--H---HHHH
Confidence 0 1112789999999987632111 111122222 347999999998 333222 1 1223
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.+...++|+|+|+||+|+...... +..+.+. +. -+.+++++||++|.|+++++
T Consensus 135 ~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~-------------------------~~-~g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 135 LFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYE-------------------------SR-YEAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp HHHHTTCCEEEECCCCTTTTCCCT-HHHHHSS-------------------------CC-TTCCCCCCSSCCTTSTTTHH
T ss_pred HHHhcCCCEEEEEeCcCCCCccHH-HHHHHHH-------------------------HH-cCCCEEEEECCCCCCHHHHH
Confidence 445568999999999999876432 1111110 11 14689999999999999999
Q ss_pred HHHHHHHHH
Q 020549 306 KAVEESAQE 314 (324)
Q Consensus 306 ~~i~~~~~~ 314 (324)
+.|.+.+++
T Consensus 188 ~~L~~~l~~ 196 (423)
T 3qq5_A 188 KTISEILPG 196 (423)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhhhh
Confidence 999998854
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=2e-17 Score=160.95 Aligned_cols=112 Identities=17% Similarity=0.246 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+.||||||+.+|.. .+.+.+ ..+|.+++|+|+.++...++. ..+......++|+|+|+||+|+..
T Consensus 73 ~~inliDTPGh~dF~~------ev~r~l--~~aD~aILVVDa~~gv~~qt~-----~~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSY------EVSRAL--AACEGALLLIDASQGIEAQTV-----ANFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHH------HHHHHH--HTCSEEEEEEETTTBCCHHHH-----HHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHH------HHHHHH--HhCCEEEEEEECCCCccHHHH-----HHHHHHHHCCCCEEEEEeccCccc
Confidence 5788999999988722 223333 346999999999998876542 112234457899999999999986
Q ss_pred hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
.. .....+++. +.+ + ....+++++||++|.||++|++.|.+.++.
T Consensus 140 a~-~~~v~~el~---~~l--------------g------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 140 AD-VDRVKKQIE---EVL--------------G------LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CC-HHHHHHHHH---HTS--------------C------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cC-HHHHHHHHH---Hhh--------------C------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 43 111222221 100 0 112368999999999999999999988764
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=2.4e-17 Score=155.82 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=67.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 243 (324)
...+.||||||+++|.. .+...+ ..+|++++|+|+.++...+... .+ ..+...+. |+|+|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~~------~~~~~~--~~aD~~ilVvDa~~g~~~qt~~--~l---~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTR------NMATGA--STCDLAIILVDARYGVQTQTRR--HS---YIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGHH------HHHHHH--TTCSEEEEEEETTTCSCHHHHH--HH---HHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHHHH--HH---HHHHHcCCCeEEEEEEcCcC
Confidence 45789999999887621 222222 4579999999999887655421 12 23334565 58999999999
Q ss_pred CCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHH
Q 020549 244 AQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 244 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l 304 (324)
.+. +......+++..+.+.+ .+ ....+++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~-------------------g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGI-------------------AFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTT-------------------TCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHh-------------------CCCccCceEEEEeccCCCCcccc
Confidence 863 22222222332222110 00 12368999999999999984
No 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.72 E-value=2e-17 Score=161.14 Aligned_cols=111 Identities=18% Similarity=0.310 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||+.+|.. .+.+.++ .+|.+++|+|+.++...++.. .+......++|+|+|+||+|+.
T Consensus 70 ~~~l~liDTPGh~dF~~------ev~~~l~--~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSY------EVSRSLA--ACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLP 136 (599)
T ss_dssp EEEEEEEECCCCGGGHH------HHHHHHH--HCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTST
T ss_pred eEEEEEEECCCchHHHH------HHHHHHH--HCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCcc
Confidence 35788999999988732 2223332 259999999999988766521 1223345689999999999998
Q ss_pred ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc--cCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
... .....+++. +.+. ..+++++||++|.|+++|++.|.+.++.
T Consensus 137 ~a~-~~~v~~ei~-------------------------~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 137 AAD-PERVAEEIE-------------------------DIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCC-HHHHHHHHH-------------------------HHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ccc-HHHHHHHHH-------------------------HHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 643 111222221 1111 2369999999999999999999988764
No 162
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1e-17 Score=143.72 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILT 143 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 143 (324)
+..+|+++|++|||||||+++|++..... ..+.++..++... .+.. .+...+. ...+|+++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~----------~d~~----~~~~~~~~~~~~~~~~~~~ 93 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK----------ADYE----RVRRFGIKAEAISTGKECH 93 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH----------HHHH----HHHTTTCEEEECCCTTCSS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc----------hhHH----HHHhCCCcEEEecCCceee
Confidence 45789999999999999999999886544 4455555444321 1110 1111111 12233322
Q ss_pred cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
+..... ...+. .....+++||||+|+... ... + ....+.+++|+|+..+.. ..|.
T Consensus 94 ----~~~~~~--~~~~~-~~~~~d~iiidt~G~~~~--~~~--------~-~~~~~~~i~vvd~~~~~~--~~~~----- 148 (221)
T 2wsm_A 94 ----LDAHMI--YHRLK-KFSDCDLLLIENVGNLIC--PVD--------F-DLGENYRVVMVSVTEGDD--VVEK----- 148 (221)
T ss_dssp ----CCHHHH--HTTGG-GGTTCSEEEEEEEEBSSG--GGG--------C-CCSCSEEEEEEEGGGCTT--HHHH-----
T ss_pred ----cccHHH--HHHHH-hcCCCCEEEEeCCCCCCC--Cch--------h-ccccCcEEEEEeCCCcch--hhhh-----
Confidence 111111 01111 234789999999996221 000 0 012468899999876532 1121
Q ss_pred HHHHhhcCCCeEEEeeccccCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv 301 (324)
.....+.|+++|+||+|+.+.. ...+..+.+. .+.+..+++++||++|.|+
T Consensus 149 --~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 149 --HPEIFRVADLIVINKVALAEAVGADVEKMKADAK-------------------------LINPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp --CHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHH-------------------------HHCTTSEEEECBTTTTBTH
T ss_pred --hhhhhhcCCEEEEecccCCcchhhHHHHHHHHHH-------------------------HhCCCCeEEEeecCCCCCH
Confidence 1112358999999999986431 1111111111 2223578999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020549 302 EAYFKAVEESAQE 314 (324)
Q Consensus 302 ~~l~~~i~~~~~~ 314 (324)
+++++.|.+.+..
T Consensus 202 ~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 202 EEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987744
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=3.8e-17 Score=143.00 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
....+|+|+|.+|||||||+|+|++..+........ .++..+.. +...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~-----~~T~~~~~------------------------~~~~--- 66 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT-----SVTRACTT------------------------GSRR--- 66 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------CCSCEE------------------------EEEE---
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCC-----CccccEEE------------------------EEEE---
Confidence 356889999999999999999999986543211100 00000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh--hhhHHHHHHHH--hccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~--~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
..+..+.||||||+.+.... ......+.+.+ ....+|++++|+|+.. +...+.+ .+.
T Consensus 67 ----------------~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~--~~~ 127 (247)
T 3lxw_A 67 ----------------WDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQ--AVR 127 (247)
T ss_dssp ----------------ETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHH--HHH
T ss_pred ----------------ECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHH--HHH
Confidence 22567899999998654111 11112233322 1245799999999874 4433321 111
Q ss_pred HHHHHh---hcCCCeEEEeeccccCChHhHHHHHH-----hHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeec
Q 020549 223 ACSILY---KTRLPLVLAFNKTDVAQHEFALEWMQ-----DFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294 (324)
Q Consensus 223 ~~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vS 294 (324)
.+.... ..+.|+|+|+||+|+.... ..+.+. .+..+.+ .+ +.+++.++
T Consensus 128 ~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~---------------------~~--g~~~~~~~ 183 (247)
T 3lxw_A 128 QVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVA---------------------EC--GGRVCAFD 183 (247)
T ss_dssp HHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH---------------------HT--TTCEEECC
T ss_pred HHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHH---------------------Hc--CCeEEEEe
Confidence 112221 1268999999999997642 112221 1121111 11 23455555
Q ss_pred ccc-----CCChHHHHHHHHHHHHH
Q 020549 295 SVS-----GAGIEAYFKAVEESAQE 314 (324)
Q Consensus 295 A~~-----g~gv~~l~~~i~~~~~~ 314 (324)
+.. +.|+++|++.|.+.+++
T Consensus 184 ~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 184 NRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHHHH
Confidence 443 68999999999999986
No 164
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=2.1e-17 Score=152.13 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCcchhh----hh---hhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549 165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~----~~---~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 237 (324)
..++.||||||+.+... .. .....+..++ ....+++++++|+...+...+ +. ..+..+...+.|+++|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiL~v~~a~~~~~~~~-~~---~i~~~~~~~~~~~i~V 203 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSD-AL---KVAKEVDPQGQRTIGV 203 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHH-TSTTEEEEEEEETTSCGGGCH-HH---HHHHHHCTTCTTEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHH-cCCCeEEEEEecCCCccchhH-HH---HHHHHhCcCCCceEEE
Confidence 46899999999865211 00 1222222333 344578888888876554443 21 1234455678999999
Q ss_pred eeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549 238 FNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (324)
Q Consensus 238 ~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~ 311 (324)
+||+|+.+... .....+... ......+.+++++||++|.|++++++.+.+.
T Consensus 204 ~NK~Dl~~~~~~~~~~~~~~~-----------------------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 204 ITKLDLMDEGTDARDVLENKL-----------------------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp EECGGGSCTTCCCHHHHTTCS-----------------------SCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred eccccccCcchhHHHHHhCCc-----------------------ccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 99999986542 111111000 0000124578999999999999999999873
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.72 E-value=4.5e-17 Score=153.97 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-------CCchhHHHhHHHHHHHHhhcCC-CeE
Q 020549 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRL-PLV 235 (324)
Q Consensus 164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~~~~~-p~i 235 (324)
....+.||||||+.+|.. .+... ...+|++++|+|+.++ +..+. ...+..+...++ |+|
T Consensus 82 ~~~~~~iiDtpG~~~f~~------~~~~~--~~~aD~~ilVvDa~~gsfe~~~~~~~qt-----~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVK------NMITG--ASQADAAILVVSAKKGEYEAGMSVEGQT-----REHIILAKTMGLDQLI 148 (435)
T ss_dssp SSCEEEECCCSSSTTHHH------HHHHT--SSCCSEEEEEEECSTTHHHHHHSTTCHH-----HHHHHHHHHTTCTTCE
T ss_pred CCeEEEEEECCCcHHHHH------HHHhh--hhhcCEEEEEEECCCCccccccccchHH-----HHHHHHHHHcCCCeEE
Confidence 357899999999988621 12221 2457999999999886 33332 222233444565 589
Q ss_pred EEeeccccCCh----HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHHH
Q 020549 236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 236 lv~NK~Dl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~ 305 (324)
+|+||+|+.+. +......+++..+.+.+ .+. ...+++++||++|.|+.+++
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY-------------------GFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHT-------------------TCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHHc-------------------CCCcCCceEEEeecccCccccccc
Confidence 99999999873 22222333333222111 010 13689999999999998543
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.71 E-value=3.4e-17 Score=138.24 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=95.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
.++|+|+|++|||||||+++|++..+...+.++ .. ..+.. +.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t-------~~-~~~~~----------------------~~i~~~---- 50 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST-------IG-VEFAT----------------------RSIQVD---- 50 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CC-------CS-CEEEE----------------------EEEEET----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-------cc-eeEEE----------------------EEEEEC----
Confidence 478999999999999999999998765322110 00 00000 000000
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~ 226 (324)
+....+.||||||+.++. ..... .+ ..++.+++|+|...... ....|.. .+..
T Consensus 51 --------------g~~~~~~i~Dt~g~~~~~--~~~~~----~~--~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~ 105 (199)
T 2f9l_A 51 --------------GKTIKAQIWDTAGQERYR--RITSA----YY--RGAVGALLVYDIAKHLTYENVERWLK---ELRD 105 (199)
T ss_dssp --------------TEEEEEEEEECSSGGGTT--CCCHH----HH--TTCSEEEEEEETTCHHHHHTHHHHHH---HHHH
T ss_pred --------------CEEEEEEEEECCCchhhh--hhhHH----HH--hcCCEEEEEEECcCHHHHHHHHHHHH---HHHH
Confidence 123467899999987652 11111 11 23578899999865321 1122221 1122
Q ss_pred HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
....+.|+++|+||+|+....... ......+. . .....++++||+++.|++++++
T Consensus 106 ~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~----------------------~-~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 106 HADSNIVIMLVGNKSDLRHLRAVP--TDEARAFA----------------------E-KNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHHHH
T ss_pred hcCCCCeEEEEEECcccccccCcC--HHHHHHHH----------------------H-HcCCeEEEEeCCCCCCHHHHHH
Confidence 223568999999999996532110 00111111 1 1346789999999999999999
Q ss_pred HHHHHHHHH
Q 020549 307 AVEESAQEF 315 (324)
Q Consensus 307 ~i~~~~~~~ 315 (324)
.|.+.+...
T Consensus 161 ~l~~~~~~~ 169 (199)
T 2f9l_A 161 NILTEIYRI 169 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.71 E-value=1.4e-16 Score=135.21 Aligned_cols=173 Identities=11% Similarity=0.091 Sum_probs=97.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
...+.+|+|+|++|||||||+|+|++..+... +...++++.. .+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~-----------~~~~~G~~~~--------------------~~~~~-- 69 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR-----------TSKTPGRTQL--------------------INLFE-- 69 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC------------------------CC--------------------EEEEE--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCcccc-----------ccCCCcccee--------------------eEEEE--
Confidence 45678999999999999999999998753210 1111111100 00000
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~ 220 (324)
. ...+.+|||||+..... +......+..++.. ...+.+++++|...+....+.
T Consensus 70 -----------------~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---- 127 (210)
T 1pui_A 70 -----------------V-ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ---- 127 (210)
T ss_dssp -----------------E-ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH----
T ss_pred -----------------e-cCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH----
Confidence 0 12678999999854210 00111122223322 345888999998776543221
Q ss_pred HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (324)
Q Consensus 221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g 300 (324)
.....+...++|+++|.||+|+.+....+........+.. +......++++||+++.|
T Consensus 128 -~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 128 -QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVL---------------------AFNGDVQVETFSSLKKQG 185 (210)
T ss_dssp -HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---------------------GGCSCEEEEECBTTTTBS
T ss_pred -HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHH---------------------hcCCCCceEEEeecCCCC
Confidence 1113344568999999999999886533221112221110 111235789999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 020549 301 IEAYFKAVEESAQEF 315 (324)
Q Consensus 301 v~~l~~~i~~~~~~~ 315 (324)
++++++.|.+.+.+.
T Consensus 186 ~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 186 VDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887654
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=138.99 Aligned_cols=179 Identities=14% Similarity=0.170 Sum_probs=92.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+|+|++|||||||+|+|++..+.....+.. +++..... ....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~t~~~~~------------------------~~~~--- 74 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK-----SITKKCEK------------------------RSSS--- 74 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------CCSCEE------------------------EEEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCC-----ceeeeEEE------------------------EEEE---
Confidence 456889999999999999999999986643221100 00000000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
..+..+.||||||+.+.... ......+.+.+.. ..+|++++|+|+.........+...+.
T Consensus 75 ----------------~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~- 137 (239)
T 3lxx_A 75 ----------------WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKIL- 137 (239)
T ss_dssp ----------------ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHH-
T ss_pred ----------------eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHH-
Confidence 22457899999998764211 1122234443332 246999999998643332222322121
Q ss_pred HHHH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc-----
Q 020549 224 CSIL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS----- 297 (324)
Q Consensus 224 ~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~----- 297 (324)
..+ .....|+++|+||+|+.......+++..... .+..+++.+ +..++++++..
T Consensus 138 -~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~-----------------~l~~l~~~~--~~~~~~~~~~~~~~~~ 197 (239)
T 3lxx_A 138 -KMFGERARSFMILIFTRKDDLGDTNLHDYLREAPE-----------------DIQDLMDIF--GDRYCALNNKATGAEQ 197 (239)
T ss_dssp -HHHHHHHGGGEEEEEECGGGC------------CH-----------------HHHHHHHHH--SSSEEECCTTCCHHHH
T ss_pred -HHhhhhccceEEEEEeCCccCCcccHHHHHHhchH-----------------HHHHHHHHc--CCEEEEEECCCCcccc
Confidence 111 1245699999999999876544333221110 000111122 24566666653
Q ss_pred CCChHHHHHHHHHHHHH
Q 020549 298 GAGIEAYFKAVEESAQE 314 (324)
Q Consensus 298 g~gv~~l~~~i~~~~~~ 314 (324)
+.|+.+|+..|.+.+.+
T Consensus 198 ~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 198 EAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37999999999988865
No 169
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.71 E-value=8.8e-17 Score=144.74 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
..+++|||||||++|. ...- ....++ ..++++|||+|....+... .+|...+..+.. ...++|+++|+||+|+
T Consensus 45 ~v~LqIWDTAGQErf~--~~~l-~~~~yy--r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL 118 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYF--EPSY-DSERLF--KSVGALVYVIDSQDEYINAITNLAMIIEYAYK-VNPSINIEVLIHKVDG 118 (331)
T ss_dssp SSCEEEEECCSCSSSC--CCSH-HHHHHH--TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCS
T ss_pred EEEEEEEECCCchhcc--chhh-hhhhhc--cCCCEEEEEEECCchHHHHHHHHHHHHHHHhh-cCCCCcEEEEEECccc
Confidence 4789999999999972 1100 111223 2468999999988763332 345443432221 2357999999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.+.+...+..+.+..-. ...+++... + .-+++++++||++ .||.++|..|.+.+.
T Consensus 119 ~~~~~R~~~~R~V~~~~---------~~~la~~~~----~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 119 LSEDFKVDAQRDIMQRT---------GEELLELGL----D-GVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SCSHHHHHHHHHHHHHH---------HHTTSSSSC----S-CCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred CchhhhhhHHHHhhHHH---------HHHHHhhcc----c-ccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 87653322222221000 011111000 0 0146899999998 589999999987653
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.70 E-value=4.4e-17 Score=154.90 Aligned_cols=110 Identities=13% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-----hhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-----MTFMSNMLYACSILYKTRLP-LVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-----~~~~~~~~~~~~~~~~~~~p-~ilv~ 238 (324)
...+.||||||+.+|.. .+... ...+|++|+|+|+.++..+ ...... .+..+...++| +|+|+
T Consensus 84 ~~~~~iiDtPGh~~f~~------~~~~~--~~~aD~~ilVvda~~g~~~~sf~~~~qt~~---~~~~~~~~~v~~iivvi 152 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIK------NMITG--TSQADCAILIIAGGVGEFEAGISKDGQTRE---HALLAFTLGVRQLIVAV 152 (458)
T ss_dssp SEEEEEEECCCCTTHHH------HHHHS--SSCCSEEEEEEECSHHHHHHHTCTTSHHHH---HHHHHHHTTCCEEEEEE
T ss_pred CceEEEEECCCcHHHHH------HHHhh--hhhCCEEEEEEeCCcCccccccCcchhHHH---HHHHHHHcCCCeEEEEE
Confidence 56799999999877521 11111 2457999999999865322 111222 22334456776 89999
Q ss_pred eccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHH
Q 020549 239 NKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 239 NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l 304 (324)
||+|+.+ .+......+++..+.+.+ .+. ...+++++||++|.|++++
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~-------------------g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKV-------------------GYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGCCEEECCTTTCBTTTBC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHc-------------------CCCccCceEEEeecccCcCcccc
Confidence 9999984 333333333333222211 110 1378999999999999754
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.70 E-value=2e-17 Score=157.62 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=63.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC-----chhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-----PMTFMSNMLYACSILYKTRLP-LVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~-----~~~~~~~~~~~~~~~~~~~~p-~ilv~ 238 (324)
+..+.||||||+++|.. .+...+ ..+|++|+|||+.++.. ....+...+ ..+...++| +|+|+
T Consensus 120 ~~~~~iiDtPGh~~f~~------~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l---~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVT------NMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHA---VLARTQGINHLVVVI 188 (467)
T ss_dssp SEEEEECCCCC-----------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHH---HHHHHTTCSSEEEEE
T ss_pred CeEEEEEECCCcHHHHH------HHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHH---HHHHHcCCCEEEEEE
Confidence 46789999999887621 111111 45799999999987641 112233223 344557888 89999
Q ss_pred eccccCC----hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 239 NKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 239 NK~Dl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
||+|+.. .+.......++..+.+.+ .+. ......+++++||++|.|+++++
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~-------------~g~---~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRV-------------AGY---NSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHH-------------HCC---CHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHh-------------cCC---CccCCceEEeccccccccccccc
Confidence 9999964 222222222332222110 000 00014689999999999998755
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.69 E-value=1.3e-16 Score=162.64 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 243 (324)
...+.||||||+++|. ..+... ...+|++|+|||+.++...++. ..+..+...++| +|+|+||+|+
T Consensus 358 ~~kI~IIDTPGHedF~------~~mi~g--as~AD~aILVVDAtdGv~~QTr-----EhL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYV------KNMITG--AAQMDGAILVVAATDGPMPQTR-----EHILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SCEEEEEECCCHHHHH------HHHHHT--SCCCSEEEEEEETTTCSCTTHH-----HHHHHHHHHTCSCEEEEEECCTT
T ss_pred CEEEEEEECCChHHHH------HHHHHH--HhhCCEEEEEEcCCccCcHHHH-----HHHHHHHHcCCCeEEEEEeeccc
Confidence 5789999999987751 111111 2457999999999998766542 112334456899 6899999999
Q ss_pred CChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccC--------CChHHHHHHHHHHHH
Q 020549 244 AQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSG--------AGIEAYFKAVEESAQ 313 (324)
Q Consensus 244 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g--------~gv~~l~~~i~~~~~ 313 (324)
.+... .....+++..+.+.. .+ ....+++++||++| .|+++|++.|.+.++
T Consensus 425 v~d~e~le~i~eEi~elLk~~-------------------G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 425 VDDEELLELVEMEVRELLSQY-------------------DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT-------------------TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccchhhHHHHHHHHHHHHHhc-------------------cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 86332 222222333222111 01 02368999999999 468999999888664
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=1.3e-16 Score=144.30 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCcchhhh---hhhHHHHHHHHhc--cCCcEEEEEEcC-CCCCCchhHHHhHHHHHHHHhhcCCCeEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS--TFPTVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~~--~~~d~iv~vvD~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 238 (324)
..++.||||||+.+.... ......+...... ..+|++++++|+ ...+...+. ...+..+...+.|+++|+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~----~~i~~~~~~~~~~~i~v~ 205 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGVI 205 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH----HHHHHHhCCCCCcEEEEE
Confidence 468999999998652100 0111112221111 346899999996 444432221 112244556789999999
Q ss_pred eccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeecccc---CCChHHHHHHHHHHHH
Q 020549 239 NKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVS---GAGIEAYFKAVEESAQ 313 (324)
Q Consensus 239 NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~---g~gv~~l~~~i~~~~~ 313 (324)
||+|+..... ..+.++.. + . .+ .++.+++++||.+ +.|+++++..+.+.++
T Consensus 206 NK~Dl~~~~~~~~~~~~~~------~--------------~----~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLTGR------V--------------I----PLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp ECTTSSCSSCCCHHHHTTS------S--------------S----CCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cCcccCCcchHHHHHHhCC------C--------------c----cCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9999986543 11111100 0 0 00 2345677778887 8999999999999998
Q ss_pred HHHH
Q 020549 314 EFME 317 (324)
Q Consensus 314 ~~~~ 317 (324)
..++
T Consensus 262 ~~~~ 265 (315)
T 1jwy_B 262 NHPI 265 (315)
T ss_dssp TCTT
T ss_pred CCCc
Confidence 7654
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.69 E-value=5.9e-16 Score=153.98 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh--HHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
..+.||||||+.+... .......++ ..+|+++||+|+.......+ +|. ..+...+.|+++|+||+|+
T Consensus 174 ~~l~LiDTPGl~~~~~---~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~~~l~------~~l~~~~~~iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEA---RNELSLGYV--NNCHAILFVMRASQPCTLGERRYLE------NYIKGRGLTVFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHT---CHHHHTHHH--HSSSEEEEEEETTSTTCHHHHHHHH------HHTTTSCCCEEEEEECGGG
T ss_pred CCeEEEECCCCCchhh---HHHHHHHHH--HhCCEEEEEEeCCCccchhHHHHHH------HHHHhhCCCEEEEEECccc
Confidence 5799999999866421 122222333 23799999999987765433 221 2234457899999999999
Q ss_pred CChH--------hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-------ccCceeeeccc------------
Q 020549 244 AQHE--------FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-------KNLKSVGVSSV------------ 296 (324)
Q Consensus 244 ~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~iv~vSA~------------ 296 (324)
.... ........+... +... +.++. ...++++|||+
T Consensus 243 ~~~~~~~~ee~e~l~~~~~~i~~~-------------~~~~----l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 243 VRESLIDPDDVEELQASENRLRQV-------------FNAN----LAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp GGGGCSSTTCHHHHHHHHHHHHHH-------------HHHH----HGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred ccccccChhhHHHHHHHHHHHHHH-------------HHHH----HHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 7543 111111111100 0000 00111 13479999999
Q ss_pred --cCCChHHHHHHHHHHHHH
Q 020549 297 --SGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 297 --~g~gv~~l~~~i~~~~~~ 314 (324)
+|.|+++|+..|.+.+..
T Consensus 306 ~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCTTSSHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHH
Confidence 999999999999987743
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.69 E-value=1.5e-16 Score=157.73 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=76.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++.+|+|+|++|+|||||+++|++..........+.+. ..+..+. ...+ ..+. ++.....
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g-~~~~d~~------~~e~--------~~gi----ti~~~~~ 67 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG-TTTTDYT------PEAK--------LHRT----TVRTGVA 67 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT-CCSSCCS------HHHH--------HTTS----CCSCEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC-cccccCC------HHHH--------hcCC----eEEecce
Confidence 456789999999999999999999765542211111000 0010000 0000 0000 0100000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.+. .....+.||||||+.+|. ..+...++ .+|.+++|+|+..+...+.. ..+..
T Consensus 68 ~~~-------------~~~~~~nliDTpG~~~f~------~~~~~~l~--~ad~~ilVvD~~~g~~~qt~-----~~~~~ 121 (665)
T 2dy1_A 68 PLL-------------FRGHRVFLLDAPGYGDFV------GEIRGALE--AADAALVAVSAEAGVQVGTE-----RAWTV 121 (665)
T ss_dssp EEE-------------ETTEEEEEEECCCSGGGH------HHHHHHHH--HCSEEEEEEETTTCSCHHHH-----HHHHH
T ss_pred EEe-------------eCCEEEEEEeCCCccchH------HHHHHHHh--hcCcEEEEEcCCcccchhHH-----HHHHH
Confidence 000 225678999999998762 12222222 36899999999888765542 12234
Q ss_pred HhhcCCCeEEEeeccccC
Q 020549 227 LYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~ 244 (324)
+...++|+|+|+||+|+.
T Consensus 122 ~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHTTCCEEEEEECGGGC
T ss_pred HHHccCCEEEEecCCchh
Confidence 445689999999999997
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.68 E-value=3.4e-16 Score=150.93 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.+|.. .+.+.+ ..+|.+|+|+|+..+...+. ...+..+...++|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSE------DTYRTL--TAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTTCCH------HHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChhHHH------HHHHHH--HHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCc
Confidence 56899999999987621 222222 34699999999998875443 122244555789999999999998
Q ss_pred ChH
Q 020549 245 QHE 247 (324)
Q Consensus 245 ~~~ 247 (324)
...
T Consensus 148 ~~~ 150 (529)
T 2h5e_A 148 IRD 150 (529)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.67 E-value=3.1e-16 Score=155.90 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=49.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.+|.. ...+.++ .+|.+|+|+|+..+...+.. ..+..+...++|+++|+||+|+.
T Consensus 76 ~~~i~liDTPG~~df~~------~~~~~l~--~aD~~ilVvDa~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTI------EVERSMR--VLDGAIVVFDSSQGVEPQSE-----TVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp TEEEEEECCCSSTTCHH------HHHHHHH--HCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEECTTST
T ss_pred CeEEEEEECcCccchHH------HHHHHHH--HCCEEEEEEECCCCcchhhH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence 56899999999987621 2222222 36999999999988765542 11233445689999999999998
Q ss_pred ChH
Q 020549 245 QHE 247 (324)
Q Consensus 245 ~~~ 247 (324)
..+
T Consensus 143 ~~~ 145 (691)
T 1dar_A 143 GAD 145 (691)
T ss_dssp TCC
T ss_pred cCC
Confidence 643
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.67 E-value=1.3e-16 Score=134.01 Aligned_cols=161 Identities=15% Similarity=0.204 Sum_probs=93.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+|+|++|||||||+++|++..+.....++ .. ..+.. +.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t-------~~-~~~~~----------------------~~i~~~--- 74 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST-------IG-VEFAT----------------------RSIQVD--- 74 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC-------CS-EEEEE----------------------EEEEET---
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-------cc-eEEEE----------------------EEEEEC---
Confidence 3578999999999999999999998765322111 00 00000 000000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~ 225 (324)
+....+.+|||||+.++. ... ...+ ..++.+++|+|..... .....|.. .+.
T Consensus 75 ---------------g~~~~~~i~Dt~g~~~~~--~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~ 128 (191)
T 1oix_A 75 ---------------GKTIKAQIWDTAGLERYR--AIT----SAYY--RGAVGALLVYDIAKHLTYENVERWLK---ELR 128 (191)
T ss_dssp ---------------TEEEEEEEEEECSCCSSS--CCC----HHHH--TTCCEEEEEEETTCHHHHHTHHHHHH---HHH
T ss_pred ---------------CEEEEEEEEECCCCcchh--hhh----HHHh--hcCCEEEEEEECcCHHHHHHHHHHHH---HHH
Confidence 113456789999987752 111 1112 2346788888875432 11122221 112
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
.....+.|+++|+||+|+.+..... ......+. . .....++++||+++.|+++++
T Consensus 129 ~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~----------------------~-~~~~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 129 DHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFA----------------------E-KNGLSFIETSALDSTNVEAAF 183 (191)
T ss_dssp HHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHHH
T ss_pred HhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHH
Confidence 2223468999999999996532110 00111111 1 134678999999999999999
Q ss_pred HHHHHHH
Q 020549 306 KAVEESA 312 (324)
Q Consensus 306 ~~i~~~~ 312 (324)
+.|.+.+
T Consensus 184 ~~l~~~i 190 (191)
T 1oix_A 184 QTILTEI 190 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998754
No 179
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-16 Score=145.36 Aligned_cols=225 Identities=14% Similarity=0.175 Sum_probs=123.5
Q ss_pred hhhhhhhhHhhhhhhhhhhhccccCCCCC---CC---ccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc
Q 020549 32 KANDKEKEEITESMDKLHIEESSSGLAGS---SS---INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (324)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~ 105 (324)
|.++.....++.++.+++.+.......+. .. .-....-..|+|+|.||||||||+|+|++...
T Consensus 29 k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~----------- 97 (376)
T 4a9a_A 29 KATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTES----------- 97 (376)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCC-----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCC-----------
Confidence 34455567788888888776433111110 00 11123345799999999999999999998653
Q ss_pred CCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hh
Q 020549 106 DPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SA 184 (324)
Q Consensus 106 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~ 184 (324)
.+.++|++| ++ ++-|++. ..+.+++|+||||+.+.... ..
T Consensus 98 --~v~~~pftT----~~--------------~~~g~~~-------------------~~~~~i~l~D~pGl~~~a~~~~~ 138 (376)
T 4a9a_A 98 --EAAEYEFTT----LV--------------TVPGVIR-------------------YKGAKIQMLDLPGIIDGAKDGRG 138 (376)
T ss_dssp --CGGGTCSSC----CC--------------EEEEEEE-------------------ETTEEEEEEECGGGCCC-----C
T ss_pred --cccCCCCce----ee--------------eeeEEEE-------------------eCCcEEEEEeCCCccCCchhhhH
Confidence 266777776 21 1223332 23678999999998764211 11
Q ss_pred hHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC-------------hHhHHH
Q 020549 185 SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ-------------HEFALE 251 (324)
Q Consensus 185 ~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-------------~~~~~~ 251 (324)
.+..+...+ ..+|++++|+|+.+.......+...+... ...-...|.++++||+|... .+....
T Consensus 139 ~g~~~l~~i--~~ad~il~vvD~~~p~~~~~~i~~EL~~~-~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~ 215 (376)
T 4a9a_A 139 RGKQVIAVA--RTCNLLFIILDVNKPLHHKQIIEKELEGV-GIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRA 215 (376)
T ss_dssp HHHHHHHHH--HHCSEEEEEEETTSHHHHHHHHHHHHHHT-TEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHH
T ss_pred HHHHHHHHH--HhcCccccccccCccHHHHHHHHHHHHHh-hHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHH
Confidence 233333333 23799999999976443333332222111 01123578899999999632 122211
Q ss_pred HHHh---------------HHHHHHHHhcC-----c-----cchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549 252 WMQD---------------FEVFQAAISSD-----H-----SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 252 ~~~~---------------~~~l~~~~~~~-----~-----~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
+... ...+....... + .....+.. +.++.......++++|+..+.|++.|..
T Consensus 216 il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~---eele~l~~~~~~~~is~~~e~gLd~Li~ 292 (376)
T 4a9a_A 216 VMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSI---EELELLYRIPNAVPISSGQDWNLDELLQ 292 (376)
T ss_dssp HHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCH---HHHHHHTTSTTEEECCTTTCTTHHHHHH
T ss_pred HHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCH---HHHHHHhcccchhhhhhhhcccchhHHH
Confidence 1111 01222222111 0 00111111 1122333445689999999999999999
Q ss_pred HHHHHH
Q 020549 307 AVEESA 312 (324)
Q Consensus 307 ~i~~~~ 312 (324)
.+.+.+
T Consensus 293 ~~y~~L 298 (376)
T 4a9a_A 293 VMWDRL 298 (376)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 988876
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=7.4e-18 Score=157.06 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=38.0
Q ss_pred cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH-HH
Q 020549 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-AV 308 (324)
Q Consensus 230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~-~i 308 (324)
..+|+++|+||+|+.... +...+.. . . . ..+.+++++||+.+.|+.+|++ .|
T Consensus 213 ~~kP~i~v~NK~D~~~~~----~l~~l~~---~--------------~-----~-~~~~~vv~iSA~~e~~l~~L~~~~l 265 (397)
T 1wxq_A 213 VNKPMVIAANKADAASDE----QIKRLVR---E--------------E-----E-KRGYIVIPTSAAAELTLRKAAKAGF 265 (397)
T ss_dssp HHSCEEEEEECGGGSCHH----HHHHHHH---H--------------H-----H-HTTCEEEEECHHHHHHHHSCSSSCC
T ss_pred cCCCEEEEEeCccccchH----HHHHHHH---H--------------H-----h-hcCCcEEEEeccchhhHHHHHhhhh
Confidence 359999999999988322 2222221 0 0 0 0146899999999999988766 55
Q ss_pred HHHHHHHHHhhh
Q 020549 309 EESAQEFMETYK 320 (324)
Q Consensus 309 ~~~~~~~~~~~~ 320 (324)
.++++.+++.|+
T Consensus 266 ~~~~p~~~~~~~ 277 (397)
T 1wxq_A 266 IEYIPGASEFKV 277 (397)
T ss_dssp CCSCC-------
T ss_pred hhhcCCCccccc
Confidence 555555555443
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.66 E-value=5.7e-16 Score=154.06 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=49.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.++.. ...+.++ .+|++|+|+|+..+...++. ..+..+...++|+++|+||+|+.
T Consensus 74 ~~~i~liDTPG~~df~~------~~~~~l~--~aD~~llVvDa~~g~~~~~~-----~~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTV------EVERSLR--VLDGAVTVLDAQSGVEPQTE-----TVWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp TEEEEEECCCCCSSCCH------HHHHHHH--HCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCCEEEEEECTTST
T ss_pred CeeEEEEECcCCcchHH------HHHHHHH--HCCEEEEEECCCCCCcHHHH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence 56899999999988622 2222222 26999999999988765542 11233455689999999999998
Q ss_pred Ch
Q 020549 245 QH 246 (324)
Q Consensus 245 ~~ 246 (324)
..
T Consensus 141 ~~ 142 (693)
T 2xex_A 141 GA 142 (693)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 182
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.66 E-value=9e-16 Score=140.14 Aligned_cols=200 Identities=16% Similarity=0.182 Sum_probs=108.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC-Cccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTS 144 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 144 (324)
..++.+++|+|+||||||||+++|++...+.++.+.+.+.++...... ..-...+.++. .+.....+... ...+|.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~-~~~~~~~~~i~--~v~q~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG-GSILGDKTRMA--RLAIDRNAFIRPSPSSGT 128 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC-CCSSCCGGGST--TGGGCTTEEEECCCCCSS
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc-cchHHHhhhhe--eeccCcccccccCccccc
Confidence 356788999999999999999999998877778888888776432210 00000111100 00000000000 000010
Q ss_pred ccccChHHHHHHHH-HHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 145 LNLFTTKFDEVISL-IERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
+........+. ......+.+++|+||||+.+... .+ ...+|++++++|+..+..... +...+
T Consensus 129 ---l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------~v-----~~~~d~vl~v~d~~~~~~~~~-i~~~i-- 191 (337)
T 2qm8_A 129 ---LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET------AV-----ADLTDFFLVLMLPGAGDELQG-IKKGI-- 191 (337)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH------HH-----HTTSSEEEEEECSCC-------CCTTH--
T ss_pred ---ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh------hH-----HhhCCEEEEEEcCCCcccHHH-HHHHH--
Confidence 00111111111 11224578999999999876411 11 145699999999854321100 00000
Q ss_pred HHHHhhcCCCeEEEeeccccCChH-hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc------cCceeeeccc
Q 020549 224 CSILYKTRLPLVLAFNKTDVAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK------NLKSVGVSSV 296 (324)
Q Consensus 224 ~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~iv~vSA~ 296 (324)
..+|.++|+||+|+.... ......+.+.. . + .... ..+++++||+
T Consensus 192 ------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~---a--------------~-----~l~~~~~~~~~~~vl~~Sal 243 (337)
T 2qm8_A 192 ------FELADMIAVNKADDGDGERRASAAASEYRA---A--------------L-----HILTPPSATWTPPVVTISGL 243 (337)
T ss_dssp ------HHHCSEEEEECCSTTCCHHHHHHHHHHHHH---H--------------H-----TTBCCSBTTBCCCEEEEBTT
T ss_pred ------hccccEEEEEchhccCchhHHHHHHHHHHH---H--------------H-----HhccccccCCCCCEEEEeCC
Confidence 124678899999986532 11112222210 0 0 0011 3578999999
Q ss_pred cCCChHHHHHHHHHHHH
Q 020549 297 SGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 297 ~g~gv~~l~~~i~~~~~ 313 (324)
+|.|+++|++.|.+...
T Consensus 244 ~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 244 HGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 183
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.66 E-value=1.7e-16 Score=156.47 Aligned_cols=135 Identities=13% Similarity=0.212 Sum_probs=85.5
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+.+..+.|+||||+.+|.. .+.+.+ ..+|.+|+|||+.+|+..++. ..++.+...++|.|+++||+|
T Consensus 64 ~~~~~iNlIDTPGH~DF~~------Ev~raL--~~~DgavlVVDa~~GV~~qT~-----~v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLA------EVYRSL--SVLDGAILLISAKDGVQAQTR-----ILFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp CSSCBCCCEECCCSSSTHH------HHHHHH--TTCSEEECCEESSCTTCSHHH-----HHHHHHHHHTCSCEECCEECC
T ss_pred ECCEEEEEEECCCcHHHHH------HHHHHH--HHhCEEEEEEeCCCCCcHHHH-----HHHHHHHHcCCCeEEEEeccc
Confidence 4578899999999999832 333333 346999999999999998872 233566678999999999999
Q ss_pred cCChHhHHHHHHhHHHHHHHHhcCc--------------------cchhhHHHHHHHhHHHH------------------
Q 020549 243 VAQHEFALEWMQDFEVFQAAISSDH--------------------SYTSTLTNSLSLALDEF------------------ 284 (324)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~~l~~~~~~~~~~~------------------ 284 (324)
+...+.. ..+..+.+.+.... .....+.+....+++.|
T Consensus 131 r~~a~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 131 QNGIDLS----TVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp SSSCCSH----HHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred cccCCHH----HHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 8765311 11111222221100 00011111111111111
Q ss_pred ---hccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 285 ---YKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 285 ---~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
....|+++.||+++.||+.|++.|.+.+|.
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred hcccccccccccccccCCCchhHhhhhhccccC
Confidence 134689999999999999999999987764
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=1.3e-15 Score=142.35 Aligned_cols=168 Identities=23% Similarity=0.345 Sum_probs=99.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
...|+|+|++|||||||+++|++.... +..+++++ +.++.|.+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~-------------i~~~~ftT------------------l~p~~G~V~~---- 201 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPK-------------IAPYPFTT------------------LSPNLGVVEV---- 201 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCE-------------ECCCTTCS------------------SCCEEEEEEC----
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcc-------------ccCcccce------------------ecceeeEEEe----
Confidence 457999999999999999999887431 22223322 0111122210
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.+|||||+.+.... ..+.....+.. ..++.+++++|.. -.....+......+..+
T Consensus 202 --------------~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~--era~~lL~vvDls--~~~~~~ls~g~~el~~l 263 (416)
T 1udx_A 202 --------------SEEERFTLADIPGIIEGASEGKGLGLEFLRHI--ARTRVLLYVLDAA--DEPLKTLETLRKEVGAY 263 (416)
T ss_dssp --------------SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH--TSSSEEEEEEETT--SCHHHHHHHHHHHHHHH
T ss_pred --------------cCcceEEEEeccccccchhhhhhhhHHHHHHH--HHHHhhhEEeCCc--cCCHHHHHHHHHHHHHH
Confidence 11256889999998653111 11222222222 3468999999986 22222222222211222
Q ss_pred h--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (324)
Q Consensus 228 ~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~ 305 (324)
. -...|.++|+||+|+.... ....+....+ ....+++++||++++|+++|+
T Consensus 264 a~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~-----------------------~~g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 264 DPALLRRPSLVALNKVDLLEEE----AVKALADALA-----------------------REGLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp CHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHH-----------------------TTTSCEEECCTTTCTTHHHHH
T ss_pred hHHhhcCCEEEEEECCChhhHH----HHHHHHHHHH-----------------------hcCCeEEEEECCCccCHHHHH
Confidence 1 1468999999999998752 1222221100 124689999999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 306 KAVEESAQEFM 316 (324)
Q Consensus 306 ~~i~~~~~~~~ 316 (324)
+.|.+.+.+.+
T Consensus 317 ~~i~~~l~~~~ 327 (416)
T 1udx_A 317 EALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhcc
Confidence 99999987543
No 185
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.65 E-value=1.6e-16 Score=157.50 Aligned_cols=126 Identities=12% Similarity=0.001 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCcchhh-------hhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549 165 HLDYVLVDTPGQIEIFT-------WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~-------~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 237 (324)
..++.|+||||+..... .......+.+++ ...+|++++|+|+...+...+.+ ..+..+...+.|+|+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi-~~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvIlV 223 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTIGV 223 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHH-TSTTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHH-hcCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEEEE
Confidence 46899999999876210 122333333333 35679999999999877665531 2234556678999999
Q ss_pred eeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH---HHHH
Q 020549 238 FNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE---SAQE 314 (324)
Q Consensus 238 ~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~---~~~~ 314 (324)
+||+|+++...... .+. .. .......++.+++++||++|.|+++|++.|.+ .+++
T Consensus 224 lNKiDlv~~~~~~~---~il---~~----------------~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe 281 (772)
T 3zvr_A 224 ITKLDLMDEGTDAR---DVL---EN----------------KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 281 (772)
T ss_dssp EECTTSSCTTCCSH---HHH---TT----------------CSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred EeCcccCCcchhhH---HHH---HH----------------HhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence 99999987643210 010 00 00000023568999999999999999999987 3555
Q ss_pred HHH
Q 020549 315 FME 317 (324)
Q Consensus 315 ~~~ 317 (324)
.++
T Consensus 282 ~P~ 284 (772)
T 3zvr_A 282 HPS 284 (772)
T ss_dssp CTT
T ss_pred Ccc
Confidence 443
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.65 E-value=1.9e-15 Score=150.41 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=48.8
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
...+.||||||+.+|.. .+.+.+ ..+|.+|+|+|+..+...+.. ..+..+...++|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~qt~-----~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTI------EVERSM--RVLDGAVMVYCAVGGVQPQSE-----TVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred ceeEEEEeCCCccchHH------HHHHHH--HHCCEEEEEEeCCCCCcHHHH-----HHHHHHHHcCCCEEEEEeCCCcc
Confidence 47899999999988621 222222 236999999999988755431 11234445689999999999997
Q ss_pred Ch
Q 020549 245 QH 246 (324)
Q Consensus 245 ~~ 246 (324)
..
T Consensus 148 ~~ 149 (704)
T 2rdo_7 148 GA 149 (704)
T ss_pred cc
Confidence 64
No 187
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.9e-15 Score=126.48 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
...++|+++|++|||||||+++|++..+.. .+....++. + .+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~----~~~~~~~~~------~-~~--------------------------- 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLS------A-AD--------------------------- 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------C---------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc----ccccCCCce------e-ee---------------------------
Confidence 456789999999999999999999876532 110000000 0 00
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.....+.||||||+.++. ......+...+ ..+|++++|+|+.............+..+..
T Consensus 88 ----------------~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 147 (193)
T 2ged_A 88 ----------------YDGSGVTLVDFPGHVKLR--YKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 147 (193)
T ss_dssp ----------------CCCTTCSEEEETTCCBSS--CCHHHHHHHHG--GGEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred ----------------ecCCeEEEEECCCCchHH--HHHHHHHHhhc--ccCCEEEEEEECCCCchhHHHHHHHHHHHHh
Confidence 125678899999988762 22222221111 2358999999987211111111111111111
Q ss_pred H----hhcCCCeEEEeeccccCChHhHHHHHHhH
Q 020549 227 L----YKTRLPLVLAFNKTDVAQHEFALEWMQDF 256 (324)
Q Consensus 227 ~----~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 256 (324)
. ...+.|+++|+||+|+.......+..+.+
T Consensus 148 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 148 ITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred hhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 1 22479999999999998765444443333
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=145.52 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=45.6
Q ss_pred cEEEEEEcC-CCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549 199 TVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL 277 (324)
Q Consensus 199 d~iv~vvD~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 277 (324)
++++|+|++ ..++...+. ..+ ..+ ..++|+|+|+||+|+.....+....+.+..+.
T Consensus 147 ~~~vy~I~~~~~~l~~~d~--~~~---~~l-~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~----------------- 203 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDV--AFM---KAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEI----------------- 203 (361)
T ss_dssp CEEEEEECSSSSSCCHHHH--HHH---HHT-CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-----------------
T ss_pred EEEEEEEecCCCCcchhHH--HHH---HHh-ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----------------
Confidence 578999986 566655542 112 222 35799999999999998764433222222111
Q ss_pred HHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
. ..+++++++||++|.| ++.|..+.+.+.
T Consensus 204 -----~-~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 204 -----E-EHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp -----T-CC-CCSCCCC----------CHHHHHHHH
T ss_pred -----H-HCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 0 1247899999999998 777777666654
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.64 E-value=1.7e-15 Score=146.67 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=55.7
Q ss_pred hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (324)
Q Consensus 163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 242 (324)
+.+..+.|+||||+.+|.. .+.+.+ ..+|.+|+|||+.+|++.++. ..++.+...++|.|+++||+|
T Consensus 97 ~~~~~iNlIDTPGHvDF~~------Ev~raL--~~~DgAvlVvda~~GV~~qT~-----~v~~~a~~~~lp~i~fINK~D 163 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSE------DTYRVL--TAVDSALVVIDAAKGVEAQTR-----KLMDVCRMRATPVMTFVNKMD 163 (548)
T ss_dssp ETTEEEEEECCCCGGGCSH------HHHHHH--HSCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCCEEEEEECTT
T ss_pred ECCEEEEEEeCCCcHHHHH------HHHHHH--HhcCceEEEeecCCCcccccH-----HHHHHHHHhCCceEEEEeccc
Confidence 4578899999999999832 333333 236999999999999998872 223566678999999999999
Q ss_pred cCChH
Q 020549 243 VAQHE 247 (324)
Q Consensus 243 l~~~~ 247 (324)
+...+
T Consensus 164 r~~ad 168 (548)
T 3vqt_A 164 REALH 168 (548)
T ss_dssp SCCCC
T ss_pred chhcc
Confidence 97654
No 190
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=4.7e-15 Score=127.39 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=98.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILT 143 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 143 (324)
+.++|+|+|++|||||||+++|+...+... .+.++..++.. .+ +.. .+...+. ..+++.++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~-~~~~i~~d~~~-------~~---d~~----~~~~~~~~~~~~~~~~~~~ 101 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKY-KIACIAGDVIA-------KF---DAE----RMEKHGAKVVPLNTGKECH 101 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTC-CEEEEEEETTT-------HH---HHH----HHHTTTCEEEEEECTTCSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCC-eEEEEECCCCC-------Cc---cHH----HHHhcCCcEEEecCCceEe
Confidence 467899999999999999999999877653 33333333321 00 000 0111000 00122221
Q ss_pred cccccCh-HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549 144 SLNLFTT-KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (324)
Q Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~ 222 (324)
+.. ...+.+..+. ....+++++|++|..... .. + ....+.++.++|+..+....... .
T Consensus 102 ----l~~~~~~~~~~~l~--~~~~d~~~id~~g~i~~~--~s--------~-~~~~~~~~~v~~~~~~~~~~~~~---~- 160 (226)
T 2hf9_A 102 ----LDAHLVGHALEDLN--LDEIDLLFIENVGNLICP--AD--------F-DLGTHKRIVVISTTEGDDTIEKH---P- 160 (226)
T ss_dssp ----CCHHHHHHHHTTSC--GGGCSEEEEECCSCSSGG--GG--------C-CCSCSEEEEEEEGGGCTTTTTTC---H-
T ss_pred ----ccHHHHHHHHHHHh--cCCCCEEEEeCCCCccCc--ch--------h-hhccCcEEEEEecCcchhhHhhh---h-
Confidence 111 1111111110 124589999999952210 00 0 11235667888864432221111 1
Q ss_pred HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (324)
Q Consensus 223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~ 302 (324)
. ..+.|.++|+||+|+.+.... ..+.+....+ .+....+++++||++|.|++
T Consensus 161 --~---~~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~---------------------~~~~~~~~~~~Sa~~g~gv~ 212 (226)
T 2hf9_A 161 --G---IMKTADLIVINKIDLADAVGA--DIKKMENDAK---------------------RINPDAEVVLLSLKTMEGFD 212 (226)
T ss_dssp --H---HHTTCSEEEEECGGGHHHHTC--CHHHHHHHHH---------------------HHCTTSEEEECCTTTCTTHH
T ss_pred --h---HhhcCCEEEEeccccCchhHH--HHHHHHHHHH---------------------HhCCCCeEEEEEecCCCCHH
Confidence 1 135899999999998643210 0111111100 22235789999999999999
Q ss_pred HHHHHHHHHHHH
Q 020549 303 AYFKAVEESAQE 314 (324)
Q Consensus 303 ~l~~~i~~~~~~ 314 (324)
++|+.|.+.+..
T Consensus 213 ~l~~~l~~~~~~ 224 (226)
T 2hf9_A 213 KVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=8.4e-15 Score=131.72 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=46.7
Q ss_pred cEEEEEEcCCC-CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549 199 TVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL 277 (324)
Q Consensus 199 d~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 277 (324)
++++|+++... ++.+.+. .. +..+. ...|+++|+||+|+..........+....+.+
T Consensus 128 ~~ll~ldePt~~~Ld~~~~--~~---l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~---------------- 185 (301)
T 2qnr_A 128 HCCFYFISPFGHGLKPLDV--AF---MKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIE---------------- 185 (301)
T ss_dssp CEEEEEECSSSSSCCHHHH--HH---HHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH----------------
T ss_pred hheeeeecCcccCCCHHHH--HH---HHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH----------------
Confidence 45677776543 5766551 22 23332 46799999999999986543222222222111
Q ss_pred HHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
. .+++++++||++| |++++|..+.+.+..
T Consensus 186 -----~--~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 186 -----E--HNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp -----H--TTCCCCCCC----------CHHHHHHHHT
T ss_pred -----H--cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 1 2478999999999 999999999887753
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=7.2e-15 Score=137.36 Aligned_cols=87 Identities=10% Similarity=0.185 Sum_probs=43.3
Q ss_pred CcEEEEEEcCC-CCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHH
Q 020549 198 PTVVTYVVDTP-RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS 276 (324)
Q Consensus 198 ~d~iv~vvD~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 276 (324)
+++++|++++. +++.+.+. .++ ..+. .++|+|+|+||+|+.....+..+.+.+.....
T Consensus 139 ~~vlL~ldePt~~~L~~~d~--~~l---k~L~-~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~--------------- 197 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI--EFM---KRLH-EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ--------------- 197 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH--HHH---HHHT-TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH---------------
T ss_pred eeEEEEEecCcccCCCHHHH--HHH---HHHh-ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH---------------
Confidence 45678877775 67776652 112 2333 37999999999999987654443333332211
Q ss_pred HHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 277 ~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
. .+++++.+||+++.++++++..|...+|
T Consensus 198 ------~--~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 198 ------E--HKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ------H--HTCCCCCCC-----------------CC
T ss_pred ------H--cCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 1 2578999999999999998888877654
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.58 E-value=1.9e-15 Score=139.43 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcchhhh---hhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEee
Q 020549 165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 239 (324)
...+.||||||+.++... ......+...... ..+|++++++|+.........|. ..+..+...+.|+|+|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~---~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI---KISREVDPSGDRTFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH---HHHHHSCTTCTTEEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH---HHHHHhcccCCCEEEEEe
Confidence 468999999998875210 0111111111111 34688899998654322222332 223455566889999999
Q ss_pred ccccCChH
Q 020549 240 KTDVAQHE 247 (324)
Q Consensus 240 K~Dl~~~~ 247 (324)
|+|++...
T Consensus 212 K~Dl~~~~ 219 (360)
T 3t34_A 212 KIDLMDKG 219 (360)
T ss_dssp CGGGCCTT
T ss_pred CCccCCCc
Confidence 99998754
No 194
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.56 E-value=1.9e-14 Score=126.88 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
+.++|+++|.+|||||||+|+|++..+.. +..++.++... . .....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t~~~-~-----------------~~~~~---- 80 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------VSPFQAEGLRP-V-----------------MVSRT---- 80 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC------------CCSSCC-CCCC-E-----------------EEEEE----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcceee-E-----------------EEEEE----
Confidence 45889999999999999999999876432 12222211000 0 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhccCCcEEEEEEcCCC-CCCchh-HHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPR-SANPMT-FMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~iv~vvD~~~-~~~~~~-~~~~~~~~~ 224 (324)
..+..+.||||||+.++..... ....+.+.+....+|+++||++... .+...+ .|...+
T Consensus 81 ---------------~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l--- 142 (262)
T 3def_A 81 ---------------MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAI--- 142 (262)
T ss_dssp ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHH---
T ss_pred ---------------ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHH---
Confidence 2255889999999988632211 1222333333334689999966543 233332 333222
Q ss_pred HHHhhc--CCCeEEEeeccccCCh
Q 020549 225 SILYKT--RLPLVLAFNKTDVAQH 246 (324)
Q Consensus 225 ~~~~~~--~~p~ilv~NK~Dl~~~ 246 (324)
...... ..|+++|+||+|+...
T Consensus 143 ~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 143 TQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHhchhhhcCEEEEEeCcccCCC
Confidence 222222 2499999999999643
No 195
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.53 E-value=6.6e-14 Score=123.93 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
..++|+++|.+|+|||||+|+|++..+.. +...+.++ .+.. .....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t-~~~~------------------~~~~~--- 83 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS------------ISPFQSEG-PRPV------------------MVSRS--- 83 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSSCCC-SSCE------------------EEEEE---
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc-eeeE------------------EEEEe---
Confidence 45789999999999999999999876532 11111111 0000 00000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCC-CCCchh-HHHhHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR-SANPMT-FMSNMLYAC 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~-~~~~~~-~~~~~~~~~ 224 (324)
..+..+.||||||+.++.... .....+.+++....+|+++||+|... .+...+ .| +..+
T Consensus 84 ---------------~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~---~~~l 145 (270)
T 1h65_A 84 ---------------RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLV---AKAI 145 (270)
T ss_dssp ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHH---HHHH
T ss_pred ---------------eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHH---HHHH
Confidence 225579999999998762211 11112222222234689999976543 333322 23 2222
Q ss_pred HHHhhc--CCCeEEEeeccccCChH
Q 020549 225 SILYKT--RLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 225 ~~~~~~--~~p~ilv~NK~Dl~~~~ 247 (324)
...... ..|+++|+||+|+...+
T Consensus 146 ~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 146 TDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHhCcccccCEEEEEECcccCCcC
Confidence 222122 26999999999998654
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.51 E-value=7.4e-14 Score=139.44 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.|+||||+.+|.. .+.+.++ .+|.+|+|||+.+|+..++.. .++.+...++|.|+|+||+|+.
T Consensus 84 ~~~iNlIDTPGHvDF~~------Ev~~aLr--~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTI------EVERSLR--VLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHH------HHHHHHH--HCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHH------HHHHHHH--HhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEcccccc
Confidence 45789999999999832 3333332 269999999999999988732 2355667899999999999997
Q ss_pred ChH
Q 020549 245 QHE 247 (324)
Q Consensus 245 ~~~ 247 (324)
..+
T Consensus 151 ~a~ 153 (709)
T 4fn5_A 151 GAN 153 (709)
T ss_dssp TCC
T ss_pred Ccc
Confidence 643
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.46 E-value=5.4e-13 Score=129.24 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=49.0
Q ss_pred CEEEEeCCCCcchhhhh-h----hHHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHHHHhhcCCCeEEEeec
Q 020549 167 DYVLVDTPGQIEIFTWS-A----SGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRLPLVLAFNK 240 (324)
Q Consensus 167 ~~~liDtpG~~~~~~~~-~----~~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 240 (324)
++.||||||+.+..... . ........+ ..+|+++||+|+... ..... ...+..+...+.|+++|+||
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~-----~~~l~~l~~~~~pvilVlNK 227 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEF-----SEAIGALRGHEDKIRVVLNK 227 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHH-----HHHHHHTTTCGGGEEEEEEC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHH-----HHHHHHHHhcCCCEEEEEEC
Confidence 58899999987621100 0 011111122 236999999999763 33322 11224455567899999999
Q ss_pred cccCChHhHHHHHHhH
Q 020549 241 TDVAQHEFALEWMQDF 256 (324)
Q Consensus 241 ~Dl~~~~~~~~~~~~~ 256 (324)
+|++..+...+....+
T Consensus 228 ~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 228 ADMVETQQLMRVYGAL 243 (550)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHh
Confidence 9999876554444333
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=1.9e-12 Score=118.46 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+.+|+|+|.||||||||+|+|++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4689999999999999999999865
No 199
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.42 E-value=2.3e-12 Score=120.08 Aligned_cols=180 Identities=12% Similarity=0.043 Sum_probs=100.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.+..++|+|++|||||||+|.|++...+..+.+.+.+.+.. + .+++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------------~-----------------~~~v~q~-- 116 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------------M-----------------ERHPYKH-- 116 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------C-----------------CCEEEEC--
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------------e-----------------eEEeccc--
Confidence 45689999999999999999999976554433222111100 0 0111110
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
.....+.++|+||.... ..... .+...+.-...+..++ ++... ...++ +..+..+
T Consensus 117 ---------------~~~~~ltv~D~~g~~~~--~~~~~-~~L~~~~L~~~~~~~~-lS~G~-~~kqr-----v~la~aL 171 (413)
T 1tq4_A 117 ---------------PNIPNVVFWDLPGIGST--NFPPD-TYLEKMKFYEYDFFII-ISATR-FKKND-----IDIAKAI 171 (413)
T ss_dssp ---------------SSCTTEEEEECCCGGGS--SCCHH-HHHHHTTGGGCSEEEE-EESSC-CCHHH-----HHHHHHH
T ss_pred ---------------cccCCeeehHhhcccch--HHHHH-HHHHHcCCCccCCeEE-eCCCC-ccHHH-----HHHHHHH
Confidence 11247899999997532 11122 2222221122244444 66643 22222 2233455
Q ss_pred hhcCCCeEEEeeccccCChH---------hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeecc--
Q 020549 228 YKTRLPLVLAFNKTDVAQHE---------FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSS-- 295 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA-- 295 (324)
...++|+++|+||.|++--+ ....+.+.+..+.. +. +.+. .....+|++|+
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~-------------~~----l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV-------------NT----FRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH-------------HH----HHHTTCSSCCEEECCTTC
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH-------------HH----HHhcCCCCCcEEEEecCc
Confidence 66789999999999975211 11122222221110 00 0011 12357899999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhhh
Q 020549 296 VSGAGIEAYFKAVEESAQEFMETYK 320 (324)
Q Consensus 296 ~~g~gv~~l~~~i~~~~~~~~~~~~ 320 (324)
..+.|+++|.+.|.+.++++++.|.
T Consensus 235 l~~~~~e~L~d~I~~~Lpeg~~~~~ 259 (413)
T 1tq4_A 235 VCHYDFPVLMDKLISDLPIYKRHNF 259 (413)
T ss_dssp TTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred CCccCHHHHHHHHHHhCccchhhHH
Confidence 6677899999999999999888774
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.42 E-value=8.7e-13 Score=125.81 Aligned_cols=207 Identities=19% Similarity=0.205 Sum_probs=106.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..|+|+|++||||||++++|+......+..+.++..|+..... .+. ........++...... ...+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa--------~~q--L~~~~~~~~i~v~~~~-~~~d 167 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA--------FDQ--LKQNATKARIPFYGSY-TEMD 167 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH--------HHH--HHHHHHHHTCCEEECC-CCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH--------HHH--HHHHhhccCceEEccC-CCCC
Confidence 4567899999999999999999997655556677776665422100 000 0011111122110000 0000
Q ss_pred ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
...-....+..+ ...+.+++||||||.... .......+........+|.+++|+|+..+...... +..
T Consensus 168 -p~~i~~~al~~~--~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-------a~~ 235 (504)
T 2j37_W 168 -PVIIASEGVEKF--KNENFEIIIVDTSGRHKQ--EDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-------AKA 235 (504)
T ss_dssp -HHHHHHHHHHHH--HHTTCCEEEEEECCCCTT--CHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-------HHH
T ss_pred -HHHHHHHHHHHH--HHCCCcEEEEeCCCCccc--chhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-------HHH
Confidence 000001111112 235789999999997642 11122222222222357999999999887542211 122
Q ss_pred HhhcCCCe-EEEeeccccCChHhHHHHHHhHHHHHHHHhcCc---cchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549 227 LYKTRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH---SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I 301 (324)
Q Consensus 227 ~~~~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v 301 (324)
+.. .+|+ ++|+||+|....... ... . ...+...- +....+ ..+.++.+++++||+.|.| +
T Consensus 236 ~~~-~~~i~gvVlNK~D~~~~~g~--~l~-~---~~~~g~PI~fig~ge~~--------~dl~~f~~~~~vsal~G~Gdi 300 (504)
T 2j37_W 236 FKD-KVDVASVIVTKLDGHAKGGG--ALS-A---VAATKSPIIFIGTGEHI--------DDFEPFKTQPFISKLLGMGDI 300 (504)
T ss_dssp HHH-HHCCCCEEEECTTSCCCCTH--HHH-H---HHHHCCCEEEEECSSST--------TCEECCTHHHHHHCCCTTTTT
T ss_pred HHh-hcCceEEEEeCCccccchHH--HHH-H---HHHhCCCeEEeccccch--------hhhhccCcceeeehhcCCCcH
Confidence 222 2675 899999998754211 111 1 11110000 000000 0122345677899999999 9
Q ss_pred HHHHHHHHHH
Q 020549 302 EAYFKAVEES 311 (324)
Q Consensus 302 ~~l~~~i~~~ 311 (324)
+.|++.+.+.
T Consensus 301 ~~Lie~i~e~ 310 (504)
T 2j37_W 301 EGLIDKVNEL 310 (504)
T ss_dssp TTTHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 9999999866
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.40 E-value=3.3e-12 Score=117.44 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.+|+|+|.||||||||+|+|++..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999874
No 202
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.37 E-value=9e-13 Score=133.67 Aligned_cols=67 Identities=25% Similarity=0.262 Sum_probs=48.1
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 244 (324)
+..+.||||||+.+|.. .....+ ..+|.+|+|+|+.++...++. ..+..+...++|+|+|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~ailVvDa~~g~~~qt~-----~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS------EVTAAL--RVTDGALVVVDTIEGVCVQTE-----TVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCH------HHHHHH--HTCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCeEEEEECCCcc
Confidence 46789999999988732 222223 346999999999998776652 11233345689999999999987
No 203
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.30 E-value=7.6e-11 Score=110.33 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++..|+++|++|+||||++..|+......+..+.++..|+.... ....+..+.+..++.. .....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a----------a~eqL~~~~~~~gvpv-----~~~~~ 163 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG----------AYHQLRQLLDRYHIEV-----FGNPQ 163 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH----------HHHHHHHHHGGGTCEE-----ECCTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh----------HHHHHHHHHHhcCCcE-----EecCC
Confidence 57889999999999999999999887777778888766653210 0011111111222110 00000
Q ss_pred cChH---HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 148 FTTK---FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 148 ~~~~---~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
.... ....+..+ ...+++++|+||||.... .......+........+|.+++|+|+..+..... .+
T Consensus 164 ~~dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~-------~a 232 (443)
T 3dm5_A 164 EKDAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKE--DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN-------QA 232 (443)
T ss_dssp CCCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH-------HH
T ss_pred CCCHHHHHHHHHHHH--HhCCCCEEEEECCCcccc--hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH-------HH
Confidence 0000 11112222 234689999999996442 1223333433333345789999999987532221 12
Q ss_pred HHHhhcCCCeEEEeeccccCChH
Q 020549 225 SILYKTRLPLVLAFNKTDVAQHE 247 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~~ 247 (324)
..+...-.+..+|+||+|.....
T Consensus 233 ~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 233 LAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp HHHHHSCTTEEEEEECCSSCSSH
T ss_pred HHHHhhCCCeEEEEECCCCcccc
Confidence 33333334557999999987643
No 204
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.27 E-value=3.5e-11 Score=110.55 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC----c--hhHHHhHHHHHHHHh----hcCCCe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN----P--MTFMSNMLYACSILY----KTRLPL 234 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~----~--~~~~~~~~~~~~~~~----~~~~p~ 234 (324)
...+.+|||+||+++.. ... .++ ..++.+|||+|.++.-+ + ...+.+.......+. ..+.|+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~--~w~----~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERK--RWF----ECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp TEEEEEEEECC---------CT----TSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred CeEEEEEeccchhhhhh--hHH----HHh--CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 35678999999977521 110 011 23589999999876311 0 111111111112222 247899
Q ss_pred EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--------hccCceeeeccccCCChHHHHH
Q 020549 235 VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--------YKNLKSVGVSSVSGAGIEAYFK 306 (324)
Q Consensus 235 ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~iv~vSA~~g~gv~~l~~ 306 (324)
|||+||+|+....... ..+. ..+..-.+......+........| .....+++|||++|.||+++|.
T Consensus 272 ILv~NK~DL~~~ki~~---~~l~---~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQV---VSIK---DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp EEEEECHHHHHHHTTT---CCGG---GTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred EEEEEChhhhhhhccc---cchh---hcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 9999999986321000 0000 000000000000000000000000 1235788999999999999999
Q ss_pred HHHHHHHHHH
Q 020549 307 AVEESAQEFM 316 (324)
Q Consensus 307 ~i~~~~~~~~ 316 (324)
.+.+.+....
T Consensus 346 ~v~~~i~~~~ 355 (362)
T 1zcb_A 346 DVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876544
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.22 E-value=2e-10 Score=107.43 Aligned_cols=157 Identities=19% Similarity=0.152 Sum_probs=87.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..|+++|++||||||++..|.......++.+.++..|+... ........+.+..++.......
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~----------~a~eqL~~~~~~~gv~~~~~~~---- 160 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP----------AAYDQLLQLGNQIGVQVYGEPN---- 160 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH----------HHHHHHHHHHHTTTCCEECCTT----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch----------hHHHHHHHHHHhcCCceeeccc----
Confidence 35778999999999999999999988777778888776664211 1111111222222321111000
Q ss_pred ccChHHHHHHH--HHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTKFDEVIS--LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
.. ....... .......+++++|+||||...+.........+....+...++.+++|+|+..+..... .+
T Consensus 161 -~~-dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~-------~a 231 (433)
T 3kl4_A 161 -NQ-NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD-------LA 231 (433)
T ss_dssp -CS-CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH-------HH
T ss_pred -cC-CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH-------HH
Confidence 00 0111111 1111234789999999995441012223334444444445789999999987533222 12
Q ss_pred HHHhhcCCCeEEEeeccccCCh
Q 020549 225 SILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
..+...-.+..+|+||+|....
T Consensus 232 ~~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 232 SRFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp HHHHHHCSSEEEEEECGGGCSC
T ss_pred HHHhcccCCcEEEEeccccccc
Confidence 3333333567899999998754
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.20 E-value=2.1e-10 Score=101.23 Aligned_cols=143 Identities=21% Similarity=0.274 Sum_probs=75.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (324)
+.++|+|++|||||||+|.|++...+..+.+.+.+.+... +.. +.. -+.+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-----~~~---~~~---------------i~~v~q~---- 55 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-----TVE---IKA---------------IGHVIEE---- 55 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCC-----CCS---CCE---------------EEESCC-----
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-----cee---eee---------------eEEEeec----
Confidence 5799999999999999999999887766555443332210 000 000 0111110
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHH----HHHhc------------cCCcEEEEEEcCC-
Q 020549 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIIT----EAFAS------------TFPTVVTYVVDTP- 208 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~----~~~~~------------~~~d~iv~vvD~~- 208 (324)
..-...+.++|++|...... +......+. +.... +.+.+.++++|..
T Consensus 56 ------------~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~ 123 (270)
T 3sop_A 56 ------------GGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG 123 (270)
T ss_dssp ---------------CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS
T ss_pred ------------CCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC
Confidence 01134678999999754311 111111111 11111 1247788999966
Q ss_pred CCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH
Q 020549 209 RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 257 (324)
+++.+.+ ...+..+... .++|+|+||+|....++.......+.
T Consensus 124 ~gL~~lD-----~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~ 166 (270)
T 3sop_A 124 HSLRPLD-----LEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVR 166 (270)
T ss_dssp SSCCHHH-----HHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred CcCCHHH-----HHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHH
Confidence 6776665 2223445555 89999999999999876655555444
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.17 E-value=3.9e-11 Score=112.71 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
.+..|+++|++|+||||+++.|.......++.+.++..|+..... ++ . +..+....++..........+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-----~~---q--L~~~~~~~gv~v~~~~~~~~dp 167 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-----YE---Q--LKQLAEKIHVPIYGDETRTKSP 167 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-----GG---S--SHHHHHHSSCCEECCSSSCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-----HH---H--HHHhhhccCcceEecCCCCCCH
Confidence 356799999999999999999998876667788887777532111 00 0 0111122222111000000000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
. .-....+ .. ..+.+++|+||||.... .......+........+|.++||+|+..+. +.+ ..+..+
T Consensus 168 ~-~i~~~~l---~~-~~~~D~vIIDT~G~~~~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~----~~~~~~ 233 (432)
T 2v3c_C 168 V-DIVKEGM---EK-FKKADVLIIDTAGRHKE--EKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAG----IQAKAF 233 (432)
T ss_dssp S-TTHHHHH---HT-TSSCSEEEEECCCSCSS--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHH----HHHHHH
T ss_pred H-HHHHHHH---HH-hhCCCEEEEcCCCCccc--cHHHHHHHHHHHHHhcCcceeEEeeccccH---HHH----HHHHHH
Confidence 0 0001111 11 25789999999997542 111222222211123579999999997664 211 112222
Q ss_pred hhcCC-C-eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCc---cchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549 228 YKTRL-P-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH---SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I 301 (324)
Q Consensus 228 ~~~~~-p-~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v 301 (324)
. ..+ | ..+|+||+|....... ... +...+...- +.+..+ ....++.+..++||..|.| +
T Consensus 234 ~-~~~~~i~gvVlnK~D~~~~~g~--~l~----~~~~~~~pi~~ig~Ge~~--------~dl~~f~~~~~~s~l~g~gdi 298 (432)
T 2v3c_C 234 K-EAVGEIGSIIVTKLDGSAKGGG--ALS----AVAETKAPIKFIGIGEGI--------DDLEPFDPKKFISRLLGMGDL 298 (432)
T ss_dssp H-TTSCSCEEEEEECSSSCSTTHH--HHH----HHHHSSCCEEEECCSSSS--------SSCCBCCHHHHHHHHTCSSCS
T ss_pred h-hcccCCeEEEEeCCCCccchHH--HHH----HHHHHCCCEEEeecCccc--------cccccCCHHHHHHHHcCCCcH
Confidence 2 235 6 7899999998653211 111 111110000 000000 0112345667789999998 8
Q ss_pred HHHHHHHHHHH
Q 020549 302 EAYFKAVEESA 312 (324)
Q Consensus 302 ~~l~~~i~~~~ 312 (324)
..|++.+.+.+
T Consensus 299 ~~L~e~~~~~~ 309 (432)
T 2v3c_C 299 ESLLEKAEDMV 309 (432)
T ss_dssp STTSSTTTSCS
T ss_pred HHHHHHHHHHH
Confidence 77777765443
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.15 E-value=3.3e-12 Score=117.84 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=74.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
...|+++|.+|+|||||+|+|++..... ... ..+...|++|. .. ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-------~~~~~~~gtT~----~~-----------------~~~---- 207 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENV-------ITTSHFPGTTL----DL-----------------IDI---- 207 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC-------CEEECCC--------CE-----------------EEE----
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccc-------eecCCCCCeec----ce-----------------EEE----
Confidence 4579999999999999999999874221 000 11344444441 00 000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh--hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIF--TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.-...+.++||||+.+.. ........+...+.....+.++|++++........ +..+.
T Consensus 208 ---------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~-----l~~~d 267 (368)
T 3h2y_A 208 ---------------PLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSG-----LARFD 267 (368)
T ss_dssp ---------------ESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETT-----TEEEE
T ss_pred ---------------EecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcc-----eEEEE
Confidence 002348899999987652 11112223333333455688999999843321111 00012
Q ss_pred HHhhcCCCeEEEeeccccCChHhHHHH
Q 020549 226 ILYKTRLPLVLAFNKTDVAQHEFALEW 252 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~ 252 (324)
.+...+.|+++|+||+|.++.......
T Consensus 268 ~l~~~~~~~~~v~nk~d~~~~~~~~~~ 294 (368)
T 3h2y_A 268 YVSGGRRAFTCHFSNRLTIHRTKLEKA 294 (368)
T ss_dssp EEESSSEEEEEEECTTSCEEEEEHHHH
T ss_pred EecCCCceEEEEecCccccccccHHHH
Confidence 233457899999999999887654333
No 209
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.15 E-value=1.4e-09 Score=98.50 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=85.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..++++|++|||||||++.|.+...+.++.+.+.+.|..... .......+.+..++. ++....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~----------a~eql~~~~~~~gv~----~v~q~~ 192 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG----------AIEQLEEHAKRIGVK----VIKHSY 192 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT----------HHHHHHHHHHHTTCE----EECCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc----------hHHHHHHHHHHcCce----EEeccc
Confidence 567899999999999999999999998888888888776643210 000111112222211 111100
Q ss_pred ccChH--HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549 147 LFTTK--FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (324)
Q Consensus 147 ~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~ 224 (324)
.+... ..+.+... ...+.+++++||+|.... .......+....+...+|-.++++|+..+. +. +..+
T Consensus 193 ~~~p~~~v~e~l~~~--~~~~~d~vliDtaG~~~~--~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~----~~~~ 261 (328)
T 3e70_C 193 GADPAAVAYDAIQHA--KARGIDVVLIDTAGRSET--NRNLMDEMKKIARVTKPNLVIFVGDALAGN---AI----VEQA 261 (328)
T ss_dssp TCCHHHHHHHHHHHH--HHHTCSEEEEEECCSCCT--TTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HH----HHHH
T ss_pred cCCHHHHHHHHHHHH--HhccchhhHHhhccchhH--HHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HH----HHHH
Confidence 11111 11112222 233678999999997553 222233333333334468899999986653 21 2222
Q ss_pred HHHhhcCCCeEEEeeccccCC
Q 020549 225 SILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 225 ~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+...--..++++||+|...
T Consensus 262 ~~~~~~~~it~iilTKlD~~a 282 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADA 282 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCS
T ss_pred HHHHHhcCCCEEEEeCcCCcc
Confidence 333322233488999999743
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=2e-12 Score=119.41 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=73.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
...|+++|.+|+|||||+|+|++........ ..+...|++|. ... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~-------~~~~~~~gtT~----~~~-----------------~~----- 208 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV-------ITTSYFPGTTL----DMI-----------------EI----- 208 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CEEEECTTSSC----EEE-----------------EE-----
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccc-------eeecCCCCeEE----eeE-----------------EE-----
Confidence 4569999999999999999999872111100 11334444431 100 00
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh--hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIF--TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (324)
.-...+.++||||+.... ........+...+.....+.++|++++..+..... +..+..
T Consensus 209 --------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~-----l~~l~~ 269 (369)
T 3ec1_A 209 --------------PLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGG-----LARLDY 269 (369)
T ss_dssp --------------ECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETT-----TEEEEE
T ss_pred --------------EeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECC-----EEEEEE
Confidence 012358899999987542 11111223333333455689999999843311111 000122
Q ss_pred HhhcCCCeEEEeeccccCChHhH
Q 020549 227 LYKTRLPLVLAFNKTDVAQHEFA 249 (324)
Q Consensus 227 ~~~~~~p~ilv~NK~Dl~~~~~~ 249 (324)
+...+.|+++++||+|.++....
T Consensus 270 l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 270 IKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp EESSSEEEEEEECTTSCEEEEEG
T ss_pred ccCCCceEEEEecCCcccccccH
Confidence 33457899999999999876543
No 211
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.14 E-value=1.4e-09 Score=98.65 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.1
Q ss_pred cCceeeeccccCCChHHHHHHHHHHHHH
Q 020549 287 NLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (324)
Q Consensus 287 ~~~iv~vSA~~g~gv~~l~~~i~~~~~~ 314 (324)
.+.++++||+++.||+.+|..+.+.+..
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999998876
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=2.5e-10 Score=105.57 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++.+|+|+|+||||||||+|+|++...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4578899999999999999999999754
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.11 E-value=7.7e-11 Score=108.86 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..+.+|+|+|.||||||||+|+|++..+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4567899999999999999999998754
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=4.6e-10 Score=104.61 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH
Q 020549 200 VVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (324)
Q Consensus 200 ~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 257 (324)
+++|++|+.+++...+ +..+..+. .+.|+|+|+||+|.+.+.+...+...+.
T Consensus 151 ~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~ 202 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKIT 202 (427)
T ss_dssp EEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHH
Confidence 5777888888777665 22334443 6789999999999998876555544443
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.07 E-value=2.8e-09 Score=95.28 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=83.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
+..++++|++|+||||++..|.......++.+.+++.|+..... ......+.+..++..-.+... .-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a----------~~ql~~~~~~~~v~v~~~~~~---~~ 164 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA----------LEQLQQLGQQIGVPVYGEPGE---KD 164 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH----------HHHHHHHHHHHTCCEECCTTC---CC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH----------HHHHHHHhccCCeEEEecCCC---CC
Confidence 77899999999999999999998877667778777666532110 001111222233221000000 00
Q ss_pred ChHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 149 TTKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 149 ~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
...+ .+.+..+. ..+++++|+||||.............+........+|.+++|+|+..+ .+. +..+..+
T Consensus 165 p~~~~~~~l~~~~--~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~----~~~~~~~ 235 (297)
T 1j8m_F 165 VVGIAKRGVEKFL--SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKA----YDLASKF 235 (297)
T ss_dssp HHHHHHHHHHHHH--HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGH----HHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHH----HHHHHHH
Confidence 0011 11222221 257899999999976510011122222222222357899999998643 221 1122223
Q ss_pred hhcCCC-eEEEeeccccCCh
Q 020549 228 YKTRLP-LVLAFNKTDVAQH 246 (324)
Q Consensus 228 ~~~~~p-~ilv~NK~Dl~~~ 246 (324)
.. ..| ..+|+||+|....
T Consensus 236 ~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 236 NQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HH-TCTTEEEEEECGGGCTT
T ss_pred Hh-hCCCCEEEEeCCCCCcc
Confidence 32 466 6789999997643
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.90 E-value=2.1e-08 Score=91.53 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=76.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--cc-------c---ccc----cccchh--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--MT-------L---PFA----ANIDIR-------- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--~~-------~---~~~----~~~~~~-------- 121 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+... .. + ... +...+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTST
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 35678899999999999999999999988877777665544310 00 0 000 000000
Q ss_pred --------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 --------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...++.++++.+++....... ...+|.|++|++.++++...+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRValArAL~~~P~lLLLDEPt 166 (359)
T 3fvq_A 107 NGKGRTAQERQRIEAMLELTGISELAGRY--PHELSGGQQQRAALARALAPDPELILLDEPF 166 (359)
T ss_dssp TSSCCSHHHHHHHHHHHHHHTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HcCCChHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 123567889999987543332 3469999999999999999999999999884
No 217
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.89 E-value=7.5e-09 Score=92.77 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=64.3
Q ss_pred CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc---hhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP---MTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (324)
Q Consensus 167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 243 (324)
.+.+||| ++++.. +.. . .-..+|++++|+|+...... .+.|.. .+...++|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~---l~~---~--~~~~ad~vilV~D~~~~~~s~~~l~~~l~------~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNL---LTK---P--HVANVDQVILVVTVKMPETSTYIIDKFLV------LAEKNELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCE---ETT---T--TEESCCEEEEEECSSTTCCCHHHHHHHHH------HHHHTTCEEEEEECCGGG
T ss_pred eEEEEEE--ccccce---eec---c--ccccCCEEEEEEeCCCCCCCHHHHHHHHH------HHHHCCCCEEEEEeHHHc
Confidence 7899999 666521 110 0 12447999999998764321 223322 223368999999999999
Q ss_pred CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhcc-CceeeeccccCCChHHHHHHHH
Q 020549 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
.+.... ++...+.+ .+.. .+++++||++|.||+++|..+.
T Consensus 128 ~~~~~v----~~~~~~~~----------------------~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 128 YDEDDL----RKVRELEE----------------------IYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CCHHHH----HHHHHHHH----------------------HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCchhH----HHHHHHHH----------------------HHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 876432 11111111 1111 6899999999999999998765
No 218
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.89 E-value=2.2e-08 Score=91.49 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=77.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-------------ccccccc----chhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------LPFAANI----DIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~~----~~~~------ 122 (324)
..++..++|+|++|||||||++.|.+...+..+.+.+.+.+..... .+....+ .+.+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~ 130 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 130 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHH
Confidence 4577889999999999999999999998887777777665432110 0000000 0111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++.++++.+++....... ...+|.|++|++.++++...+++++|+|.|-
T Consensus 131 ~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 131 ELDNTPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 12456788899987643322 3469999999999999999999999999885
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.88 E-value=3.3e-08 Score=88.61 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=83.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (324)
.++..|+++|++|+||||++..|.+.....++.+.+++.|.... ...-.+..+.+..++.. ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~----------~a~eqL~~~~~~~gl~~----~~~-- 165 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA----------AAIEQLKIWGERVGATV----ISH-- 165 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH----------HHHHHHHHHHHHHTCEE----ECC--
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH----------HHHHHHHHHHHHcCCcE----Eec--
Confidence 45678999999999999999999988776677777766654211 00111223344444321 111
Q ss_pred ccChHHHHHH---HHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHH---HHhc---cCCcEEEEEEcCCCCCCchhHH
Q 020549 147 LFTTKFDEVI---SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE---AFAS---TFPTVVTYVVDTPRSANPMTFM 217 (324)
Q Consensus 147 ~~~~~~~~~~---~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~---~~~~---~~~d~iv~vvD~~~~~~~~~~~ 217 (324)
.+.+..+.+ ....+...+++++|+||||.... .......+.. .+.. ..++.+++|+|+..+ ...+
T Consensus 166 -~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~--~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l 239 (306)
T 1vma_A 166 -SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGL 239 (306)
T ss_dssp -STTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHH
T ss_pred -CCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh--HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHH
Confidence 111222222 23334456899999999995332 1222222222 2211 236888999998632 1211
Q ss_pred HhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549 218 SNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 218 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 245 (324)
..+..+...-...-+|+||+|-..
T Consensus 240 ----~~a~~~~~~~~i~gvVlTk~D~~~ 263 (306)
T 1vma_A 240 ----VQAKIFKEAVNVTGIILTKLDGTA 263 (306)
T ss_dssp ----HHHHHHHHHSCCCEEEEECGGGCS
T ss_pred ----HHHHHHHhcCCCCEEEEeCCCCcc
Confidence 111222222223467889999754
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.88 E-value=9.3e-09 Score=97.18 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=80.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
..++.+|+|+|++|||||||++.|.+.....++.+.+.+.|..... . .... ..+....++ +++...
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a----a----~eQL--~~~~~r~~I----~vV~Q~ 355 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA----A----VEQL--QVWGQRNNI----PVIAQH 355 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH----H----HHHH--HHHHHHHTC----CEECCS
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh----h----HHHH--HHHHHhcCc----eEEecc
Confidence 4567889999999999999999999987777777777655432100 0 0000 001001111 222211
Q ss_pred cccC--hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHH---HHHHhc---cCCcEEEEEEcCCCCCCchhHH
Q 020549 146 NLFT--TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFAS---TFPTVVTYVVDTPRSANPMTFM 217 (324)
Q Consensus 146 ~~~~--~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~---~~~~~~---~~~d~iv~vvD~~~~~~~~~~~ 217 (324)
..+. ......+... ...+.+++|+||+|.... .......+ .+.++. ...+-+++++|+..+.....
T Consensus 356 ~~~~p~~tV~e~l~~a--~~~~~DvVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~-- 429 (503)
T 2yhs_A 356 TGADSASVIFDAIQAA--KARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-- 429 (503)
T ss_dssp TTCCHHHHHHHHHHHH--HHTTCSEEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--
T ss_pred cCcCHHHHHHHHHHHH--HhcCCCEEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--
Confidence 1111 1122222222 235789999999996543 11122222 222221 12567889999876532222
Q ss_pred HhHHHHHHHHhh-cCCCeEEEeeccccC
Q 020549 218 SNMLYACSILYK-TRLPLVLAFNKTDVA 244 (324)
Q Consensus 218 ~~~~~~~~~~~~-~~~p~ilv~NK~Dl~ 244 (324)
.+..+.. .++ ..+|+||+|-.
T Consensus 430 -----~ak~f~~~~~i-tgvIlTKLD~t 451 (503)
T 2yhs_A 430 -----QAKLFHEAVGL-TGITLTKLDGT 451 (503)
T ss_dssp -----HHHHHHHHTCC-SEEEEECGGGC
T ss_pred -----HHHHHHhhcCC-CEEEEEcCCCc
Confidence 1122222 333 36899999964
No 221
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.87 E-value=1.1e-08 Score=90.46 Aligned_cols=108 Identities=10% Similarity=0.099 Sum_probs=76.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------cccccc-----ccchhc------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAA-----NIDIRD------ 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~~~~~~-----~~~~~~------ 122 (324)
..++..++|+|++|||||||++.|++...+..+.+.+.+.+.... ..+..+ ...+.+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHH
Confidence 356788999999999999999999998888777777766543100 001100 000111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt 171 (275)
T 3gfo_A 111 VNMKLPEDEIRKRVDNALKRTGIEHLKD--KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171 (275)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhc--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 124567788888865332 233469999999999999999999999999884
No 222
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.87 E-value=1.2e-08 Score=86.82 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=74.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-----cccccccc----ccchh--------------cH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA----NIDIR--------------DT 123 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~~~----~~~~~--------------~~ 123 (324)
..+.+++|+|++|||||||++.|++...+..+.+.+.+.+.. +...+... ...+. ..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 112 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK 112 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHH
Confidence 456779999999999999999999988777666666543320 00000000 00001 12
Q ss_pred HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++... . .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 113 ~~~~~~l~~~gl~~~-~--~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 113 NEIMDALESVEVLDL-K--KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp HHHHHHHHHTTCCCT-T--SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred HHHHHHHHHcCCCcC-C--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 345677888988654 2 233469999999999999999999999999985
No 223
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.85 E-value=3.6e-08 Score=86.69 Aligned_cols=108 Identities=13% Similarity=0.186 Sum_probs=76.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc----cch-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN----IDI----------- 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~----~~~----------- 120 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+..... .+.... ..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 3567889999999999999999999998887777776554432100 000000 000
Q ss_pred ---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhC------CCCEEEEeCCC
Q 020549 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPG 175 (324)
Q Consensus 121 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~liDtpG 175 (324)
.....+.++++.+++...... ....+|.|++|++.++.+... +++++|+|.|-
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt 175 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQR--DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTS--BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred CcHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence 112356778889988653322 234699999999999999998 99999999885
No 224
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.84 E-value=1.1e-08 Score=89.42 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=74.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------ccccccc----ccchhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAA----NIDIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~----~~~~~~---------- 122 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+... ...+... ...+++
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 117 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC
Confidence 35677899999999999999999999987777777665543210 0000000 001111
Q ss_pred ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 118 ~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 118 SSSSEIEEMVERATEIAGLGEKIK--DRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp CCHHHHHHHHHHHHHHHCCGGGGG--SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CChHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 123456788888864322 233469999999999999999999999999984
No 225
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.84 E-value=2e-08 Score=86.92 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=74.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc--------ccccccccc----cchh-------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----IDIR------------- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~----~~~~------------- 121 (324)
.. ..++|+|++|||||||++.|.+...+..+.+.+.+.+.. +...+.... ..++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 101 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV 101 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence 35 679999999999999999999998887777777554321 100111100 0001
Q ss_pred -cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 -DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLD--RKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTT--CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred hHHHHHHHHHHHcCCHHHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1224567788888865332 223469999999999999999999999999984
No 226
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.83 E-value=6.8e-08 Score=82.71 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=74.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc--------------ccccccc----cchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------TLPFAAN----IDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~----~~~~~------ 122 (324)
..+..++|+|++|||||||++.|.+...+..+.+.+.+.+.... ..+.... ..+.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 107 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM 107 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHH
Confidence 46778999999999999999999998877766666655432110 0000000 00111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 168 (224)
T 2pcj_A 108 LKMGKPKKEAKERGEYLLSELGLGDKLS--RKPYELSGGEQQRVAIARALANEPILLFADEPT 168 (224)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCTTCTT--CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 123456788888865432 223469999999999999999999999999985
No 227
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.83 E-value=5.8e-08 Score=83.80 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccccc----chhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAANI----DIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~~----~~~~----- 122 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+... ...+....+ .+.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 35678899999999999999999999887776666665433210 000000000 0011
Q ss_pred --------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 --------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 --------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt 173 (235)
T 3tif_A 108 LIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173 (235)
T ss_dssp HHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHCCCChhh-hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 12345678888876421 12234469999999999999999999999999885
No 228
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.82 E-value=7.3e-08 Score=84.06 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=72.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE-------EEeccCCcccccccccccch--------------hcHHH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-------YVMNLDPAVMTLPFAANIDI--------------RDTIR 125 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~-------~i~~~d~~~~~~~~~~~~~~--------------~~~~~ 125 (324)
..+..++|+|++|||||||++.|++...+..+.+ ++.+........+...++.. .....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence 4677899999999999999999999876655443 22222111111111111100 11234
Q ss_pred HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 109 ~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 109 AMQALDYLNLTHLAK--REFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp HHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred HHHHHHHcCChHHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 667888888865322 233469999999999999999999999999985
No 229
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.82 E-value=4.7e-08 Score=89.86 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=76.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------------cc---cccccch-------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------------LP---FAANIDI------- 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~---~~~~~~~------- 120 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+..... +| ...++..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~ 105 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC
Confidence 3567889999999999999999999998887777766554331100 00 0001100
Q ss_pred -h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+ ...++.++++.+++...... ....+|.|++|++.++++...+++++|+|.|-
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r--~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQLAHLLDR--KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTC--CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CHHHHHHHHHHHHHHcCCchhhcC--ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 0 11246678899988654332 33469999999999999999999999999984
No 230
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.82 E-value=7.9e-08 Score=84.27 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=75.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------cccccccc----cchhc-------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAAN----IDIRD------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------~~~~~~~~----~~~~~------- 122 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+... ...+.... ..+++
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~ 126 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM 126 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 35677899999999999999999999987777777765544310 00000000 00111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPt 187 (263)
T 2olj_A 127 KVRKWPREKAEAKAMELLDKVGLKDKAH--AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187 (263)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 123456788888854322 233469999999999999999999999999884
No 231
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.81 E-value=4.3e-09 Score=96.23 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC---------CchhHHHhHHHHHHHHh----hcC
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA---------NPMTFMSNMLYACSILY----KTR 231 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~---------~~~~~~~~~~~~~~~~~----~~~ 231 (324)
...+.+|||+||+++. ..... ++ ..++.+|||+|.++.- .....+...+ ..+. ..+
T Consensus 192 ~~~l~iwDt~GQe~~r--~~w~~----yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~---~~i~~~~~~~~ 260 (353)
T 1cip_A 192 DLHFKMFDVGGQRSER--KKWIH----CF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF---DSICNNKWFTD 260 (353)
T ss_dssp TEEEEEEEECCSGGGG--GGGGG----GC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH---HHHHTCGGGTT
T ss_pred CeeEEEEeCCCchhhh--HHHHH----HH--hcCCEEEEEEECccccccccccchhhhHHHHHHHH---HHHHcCccccC
Confidence 4567899999998762 11111 11 2368999999987631 1122222222 2222 247
Q ss_pred CCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc--CccchhhHHHHHHHhHHHH-----hccCceeeeccccCCChHHH
Q 020549 232 LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDEF-----YKNLKSVGVSSVSGAGIEAY 304 (324)
Q Consensus 232 ~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~-----~~~~~iv~vSA~~g~gv~~l 304 (324)
.|+|||+||+|+....... ..+. ..+.. .+.......+.....+... ...+.+++|||++|.||+++
T Consensus 261 ~piiLv~NK~DL~~~ki~~---~~l~---~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKK---SPLT---ICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp SEEEEEEECHHHHHHHHTT---SCGG---GTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred CcEEEEEECcCchhhhccc---cchh---hcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 8999999999985321000 0000 00000 0000000000000000001 12467899999999999999
Q ss_pred HHHHHHHHHHH
Q 020549 305 FKAVEESAQEF 315 (324)
Q Consensus 305 ~~~i~~~~~~~ 315 (324)
|..+.+.+...
T Consensus 335 F~~v~~~i~~~ 345 (353)
T 1cip_A 335 FDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 232
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.81 E-value=2.1e-08 Score=88.77 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=75.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc--c----------cccccccc--c----chhc-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--V----------MTLPFAAN--I----DIRD----- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~--~----------~~~~~~~~--~----~~~~----- 122 (324)
..++.+++|+|++|||||||++.|++...+..+.+.+.+.+.. . ...+.... + .+++
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 3467789999999999999999999998887777777664432 0 00000000 0 0000
Q ss_pred ---------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ---------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt 189 (279)
T 2ihy_A 124 AFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ--QYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189 (279)
T ss_dssp C---------CCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred hhhccccccCCcHHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 123456788888754322 233469999999999999999999999999984
No 233
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.79 E-value=1.3e-07 Score=83.00 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=74.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------cc-cccccc--ccchhc------------H
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VM-TLPFAA--NIDIRD------------T 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~-~~~~~~--~~~~~~------------~ 123 (324)
.. +.+++|+|++|||||||++.|++.. +..+.+.+.+.+.. +. ..+... ...+.+ .
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 35 7789999999999999999999998 87777766553321 11 111111 111111 2
Q ss_pred HHHHHHHHHcCCC-CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 IRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++. .... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 106 ~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILR--RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp HHHHHHHHHTTCCGGGGG--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred HHHHHHHHHcCCChhHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 2356778888886 4222 233469999999999999999999999999985
No 234
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.78 E-value=3.2e-08 Score=86.83 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=74.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------------------ccccccc----cc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------------------MTLPFAA----NI 118 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------------------~~~~~~~----~~ 118 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+... ...+... ..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 108 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 108 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCC
Confidence 35677899999999999999999999887777777665543320 0000000 00
Q ss_pred chhc-----------------HHHHHHHHHHcCCCCC-CcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 119 DIRD-----------------TIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 119 ~~~~-----------------~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.+ ...+.++++.+++... . -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 181 (262)
T 1b0u_A 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ--GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 181 (262)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH--TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhh--cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0111 1234567888887543 2 2234469999999999999999999999999884
No 235
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.78 E-value=1e-08 Score=93.78 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=25.0
Q ss_pred CceeeeccccCCChHHHHHHHHHHHHHHHH
Q 020549 288 LKSVGVSSVSGAGIEAYFKAVEESAQEFME 317 (324)
Q Consensus 288 ~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~ 317 (324)
..+++|||+++.||+++|..+.+.+.....
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999988765443
No 236
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.78 E-value=1.1e-07 Score=86.65 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=76.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccc----cccchhcH----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFA----ANIDIRDT---------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~----~~~~~~~~---------- 123 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+... ...+.. +...+++.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 35677899999999999999999999988877777765543210 000000 01111111
Q ss_pred ---HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 ---IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.++.++++.+++...... ....+|.|++|++.++++...+++++|+|.|-
T Consensus 103 ~~~~~v~~~l~~~~L~~~~~~--~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 103 KDPKRVLDTARDLKIEHLLDR--NPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp CCHHHHHHHHHHTTCTTTTTS--CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred CHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 345678889988654332 23469999999999999999999999999984
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.78 E-value=1.6e-07 Score=84.03 Aligned_cols=40 Identities=30% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
++..|+|+|++|||||||++.|.+...+.++.+.+.+.|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 5778999999999999999999999888888888877664
No 238
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.77 E-value=9.2e-08 Score=87.26 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=75.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc--------ccccc----cccchhc------------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------TLPFA----ANIDIRD------------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~--------~~~~~----~~~~~~~------------ 122 (324)
..+..++|+|++|||||||++.|++...+..+.+.+.+.+.... ..+.. +...+++
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~ 118 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP 118 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 46778999999999999999999999887777776655432100 00000 0001111
Q ss_pred ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++.++++.+++..... .....+|.|++|++.++++...+++++|+|.|=
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~~--r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYAN--RFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHHHHHHcCChhHhc--CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 124567888898865332 223469999999999999999999999999984
No 239
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.75 E-value=6.2e-08 Score=88.70 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=75.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----c---ccc----cccchhc-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----L---PFA----ANIDIRD----------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----~---~~~----~~~~~~~----------- 122 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+..... + +.. ++..+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 3567789999999999999999999998877777666554321100 0 000 0001111
Q ss_pred -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++.++++.+++...... ....+|.|++|++.++++...+++++|+|.|-
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNR--YPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred CHHHHHHHHHHHHHHcCCchHhhC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 1245678889998654332 23469999999999999999999999999984
No 240
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.75 E-value=1.4e-07 Score=86.24 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=75.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--h--h--
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--I--R-- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~--~-- 121 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+.... -++. ..++. . +
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI 105 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 356778999999999999999999999877776666655432100 0000 00000 0 0
Q ss_pred --c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 --D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 --~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. ..++.++++.+++..... .....+|.|++|++.++++...+++++|+|.|=
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~--r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 106 SKDEVEKRVVEIARKLLIDNLLD--RKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp HHHHTTHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CHHHHHHHHHHHHHHcCCchHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0 124678889998865332 223469999999999999999999999999984
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.74 E-value=3.1e-07 Score=86.18 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=82.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.++..|+++|.+|+||||++..|....... +..+.++..|+..... .+. +..+.+..++..-.+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a--------~~q--l~~~~~~~~l~v~~~~~--- 164 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA--------IKQ--LETLAEQVGVDFFPSDV--- 164 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH--------HHH--HHHHHHHHTCEECCCCS---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH--------HHH--HHhhcccCCeeEEeCCC---
Confidence 456789999999999999999999877666 7788887777643211 000 01111122221100000
Q ss_pred cccC-hHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549 146 NLFT-TKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (324)
Q Consensus 146 ~~~~-~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~ 223 (324)
... ..+ ...+..+ ...+++++|+||||..... ......+........++.+++|+|+..+. +.+. .
T Consensus 165 -~~dp~~i~~~~l~~~--~~~~~D~VIIDTpG~l~~~--~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~----~ 232 (433)
T 2xxa_A 165 -GQKPVDIVNAALKEA--KLKFYDVLLVDTAGRLHVD--EAMMDEIKQVHASINPVETLFVVDAMTGQ---DAAN----T 232 (433)
T ss_dssp -SSCHHHHHHHHHHHH--HHTTCSEEEEECCCCCTTC--HHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHH----H
T ss_pred -CCCHHHHHHHHHHHH--HhCCCCEEEEECCCccccc--HHHHHHHHHHHHhhcCcceeEEeecchhH---HHHH----H
Confidence 000 011 1111111 1257899999999965431 11222222222234578999999997653 2221 1
Q ss_pred HHHHhhcCCC-eEEEeeccccCC
Q 020549 224 CSILYKTRLP-LVLAFNKTDVAQ 245 (324)
Q Consensus 224 ~~~~~~~~~p-~ilv~NK~Dl~~ 245 (324)
+..+.. ..+ .-+|+||+|...
T Consensus 233 ~~~f~~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 233 AKAFNE-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHHH-HSCCCCEEEECTTSSS
T ss_pred HHHHhc-cCCCeEEEEecCCCCc
Confidence 122222 244 347999999754
No 242
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.74 E-value=8.8e-08 Score=87.51 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=75.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------c----c----------ccc---ccccc--h
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------M----T----------LPF---AANID--I 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------~----~----------~~~---~~~~~--~ 120 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+... . . ++. ..++. .
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 107 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 35677899999999999999999999887776666665433210 0 0 000 00000 0
Q ss_pred h------c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 ~------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+ . ..++.++++.+++..... .....+|.|++|++.++++...+++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~--~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~ 168 (353)
T 1oxx_K 108 TNMKMSKEEIRKRVEEVAKILDIHHVLN--HFPRELSGAQQQRVALARALVKDPSLLLLDEPF 168 (353)
T ss_dssp TTSSCCHHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 0 0 224667889998865332 223469999999999999999999999999984
No 243
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.73 E-value=2.1e-07 Score=81.83 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=74.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------ccccccc-----------cccch-------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFA-----------ANIDI------- 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~~~~~~-----------~~~~~------- 120 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+.. +...+.. .++..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 109 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP 109 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence 3567789999999999999999999988777666666443321 0000000 00000
Q ss_pred --hcHHHHHHHHHHcCCC--CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 --RDTIRYKEVMKQFNLG--PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 --~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+.++++.+++. .... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKD--RVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTT--CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHHHHHHcCcCCccccc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 0122456788888886 3222 223469999999999999999999999999885
No 244
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.73 E-value=6.5e-08 Score=84.63 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=74.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----------cccccc----------ccc----h
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPFAA----------NID----I 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----------~~~~~~----------~~~----~ 120 (324)
...+..++|+|++|||||||++.|++...+..+.+.+.+.+.... ..+... ++. .
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 346778999999999999999999998877766666655432100 000000 000 0
Q ss_pred -------------------hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.....+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 181 (257)
T 1g6h_A 110 PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD--RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181 (257)
T ss_dssp TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred hccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC--CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 00124567788888754322 233469999999999999999999999999885
No 245
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.73 E-value=3.2e-08 Score=85.07 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec------cCCcccccccccccch---hcHHHHHHHHHHcCCCC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANIDI---RDTIRYKEVMKQFNLGP 137 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~------~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 137 (324)
.++..++|+|++|||||||++.|++...+..+.+.+.+ .++.....+...++.. .......++++.+++..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~ 111 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEE 111 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHH
Confidence 46778999999999999999999998877666554432 1221111000001100 01112233344333321
Q ss_pred C-----Cc----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 138 N-----GG----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 138 ~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. .+ +-.....+|.|++|++.++++...+++++|+|.|-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 112 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 0 00 00112469999999999999999999999999985
No 246
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.72 E-value=2.1e-08 Score=86.71 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=66.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec------cCCcccccccccccch--h-cHHHHHHHHHHcC--
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANIDI--R-DTIRYKEVMKQFN-- 134 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~------~d~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~-- 134 (324)
..++..++|+|++|||||||++.|++...+..+.+.+.+ .++.....+...++.. . ......++.+.++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 107 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence 356778999999999999999999998776655554422 1221111110001100 0 0011223333222
Q ss_pred ----CCCCC---cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 135 ----LGPNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 135 ----l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+.+.+ -.-.....+|.|++|++.++++...+++++|+|.|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp HHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 22211 011233469999999999999999999999999985
No 247
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.71 E-value=2.7e-07 Score=83.16 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=35.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
..++..|+++|++|+||||++..|.+.....++.+.+++.|+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345778999999999999999999988777777888877664
No 248
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.70 E-value=1.7e-07 Score=86.25 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=74.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------c----cc---ccc----cccchhc------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------M----TL---PFA----ANIDIRD------ 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------~----~~---~~~----~~~~~~~------ 122 (324)
..+..++|+|++|||||||++.|.+...+..+.+.+.+.+... . .+ +.. ++..+.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 4677899999999999999999999988777766665433211 0 00 000 0001111
Q ss_pred ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..++.++++.+++...... ....+|.|++|++.++++...+++++|+|.|=
T Consensus 107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 167 (372)
T 1g29_1 107 KLRKVPRQEIDQRVREVAELLGLTELLNR--KPRELSGGQRQRVALGRAIVRKPQVFLMDEPL 167 (372)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCGGGTTC--CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 1245678888888653332 23469999999999999999999999999984
No 249
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.70 E-value=4.9e-08 Score=84.50 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------ccccccc----------ccch-----
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAA----------NIDI----- 120 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~----------~~~~----- 120 (324)
..+..++|+|++|||||||++.|++...+..+.+.+.+.+... ...+... ++..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 109 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR 109 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC
Confidence 4677899999999999999999999887776666665443210 0000000 0000
Q ss_pred --hc--HHHHHHHHHHcC-CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 --RD--TIRYKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 --~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.. ...+.++++.++ +..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 110 ~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 110 KDKEGIKRDLEWIFSLFPRLKERLK--QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp CCSSHHHHHHHHHHHHCHHHHTTTT--SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred CCHHHHHHHHHHHHHHcccHhhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 01 123456666663 543222 223469999999999999999999999999985
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.70 E-value=2.2e-07 Score=86.74 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=81.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++..|+++|++|+||||++..|.+.....++.+.+++.|+..... .. ....+.+..++.. +..-..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa--------~~--qL~~~~~~~gv~v----~~~~~~ 162 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA--------RE--QLRLLGEKVGVPV----LEVMDG 162 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH--------HH--HHHHHHHHHTCCE----EECCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh--------HH--HHHHhcccCCccE----EecCCC
Confidence 567899999999999999999999887778888887766432100 00 0111222233221 000000
Q ss_pred cC-hHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 148 FT-TKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 148 ~~-~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
.. ..+ ...+..+ ....++++|+||||.... .......+........++.+++|+|+..+ ++.. ..+.
T Consensus 163 ~~p~~i~~~~l~~~--~~~~~DvVIIDTaG~l~~--d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av----~~a~ 231 (425)
T 2ffh_A 163 ESPESIRRRVEEKA--RLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG---QEAL----SVAR 231 (425)
T ss_dssp CCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHH----HHHH
T ss_pred CCHHHHHHHHHHHH--HHCCCCEEEEcCCCcccc--cHHHHHHHHHhhhccCCceEEEEEeccch---HHHH----HHHH
Confidence 00 111 1112211 135789999999996543 11122222222223357889999998654 2211 1112
Q ss_pred HHhhcCCC-eEEEeeccccCC
Q 020549 226 ILYKTRLP-LVLAFNKTDVAQ 245 (324)
Q Consensus 226 ~~~~~~~p-~ilv~NK~Dl~~ 245 (324)
.+.. ..+ .-+|+||+|...
T Consensus 232 ~f~~-~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 232 AFDE-KVGVTGLVLTKLDGDA 251 (425)
T ss_dssp HHHH-HTCCCEEEEESGGGCS
T ss_pred HHHh-cCCceEEEEeCcCCcc
Confidence 2222 233 467999999754
No 251
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.70 E-value=1.6e-07 Score=86.23 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=75.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------------ccc---cccc--ch-----
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------------LPF---AANI--DI----- 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~~---~~~~--~~----- 120 (324)
...+..++|+|++|||||||++.|.+...+..+.+.+.+.+..... ++. ..++ ..
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 113 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 113 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 3567789999999999999999999998877777666554321100 000 0000 00
Q ss_pred -hc--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -RD--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+. ..++.++++.+++...... ....+|.|++|++.++++....++++|+|.|=
T Consensus 114 ~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIEELLNR--YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTS--CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CHHHHHHHHHHHHHHcCChhHhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 01 1246678899988653322 23469999999999999999999999999984
No 252
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.69 E-value=4.4e-08 Score=96.04 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=42.9
Q ss_pred CCCEEEEeCCCCcchhhh---hhhHHHHHHHHhc---cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEe
Q 020549 165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~~---~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 238 (324)
.+++.|+|+||....... ......+...+.. ....+++.++++........ .+..+..+...+.+.|+|+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~----~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE----ALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH----HHHHHHHHCSSCCSEEEEE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH----HHHHHHHHhhcCCceEEEe
Confidence 478999999996553111 0112222222222 22356777776543333221 1333455566788999999
Q ss_pred eccccCChH
Q 020549 239 NKTDVAQHE 247 (324)
Q Consensus 239 NK~Dl~~~~ 247 (324)
||+|++...
T Consensus 222 TK~Dlv~~g 230 (608)
T 3szr_A 222 TKPDLVDKG 230 (608)
T ss_dssp ECGGGSSSS
T ss_pred cchhhcCcc
Confidence 999998654
No 253
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.69 E-value=3.7e-08 Score=91.23 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=24.5
Q ss_pred CceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549 288 LKSVGVSSVSGAGIEAYFKAVEESAQEFM 316 (324)
Q Consensus 288 ~~iv~vSA~~g~gv~~l~~~i~~~~~~~~ 316 (324)
+.+++|||+++.||+++|..+.+.+....
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988876543
No 254
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.68 E-value=3e-07 Score=80.99 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=69.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcHH--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDTI-------- 124 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~~-------- 124 (324)
...+.+++|+|++|||||||++.|++...+..+.+.+.+.+.... ..+....+ .+++.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~ 121 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCC
Confidence 456778999999999999999999998877766666655432100 00000000 001110
Q ss_pred ------------HHHHHHHHc--CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 125 ------------RYKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 125 ------------~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.++++.+ ++....+ .....+|.|++|++.++++...+++++|+|.|-
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~--~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 184 (271)
T 2ixe_A 122 TMEEITAVAMESGAHDFISGFPQGYDTEVG--ETGNQLSGGQRQAVALARALIRKPRLLILDNAT 184 (271)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGSBCC--GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hHHHHHHHHHHHhHHHHHHhhhcchhhhhc--CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 112334444 2322111 223469999999999999999999999999885
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.68 E-value=4.8e-07 Score=80.69 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=81.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (324)
++..++++|++|+||||++..|.+.....++.+.+++.|+.... .......+.+..++..-.+ ....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~----------~~~ql~~~~~~~~l~~~~~---~~~~ 163 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA----------AREQLRLLGEKVGVPVLEV---MDGE 163 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH----------HHHHHHHHHHHHTCCEEEC---CTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh----------HHHHHHHhcccCCeEEEEc---CCCC
Confidence 56789999999999999999999987777778887776653210 0001112333333322100 0000
Q ss_pred cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 227 (324)
-...+ .+.........+++++|+||||.... .......+........++.+++|+|+..+ .+.+. .+..+
T Consensus 164 ~p~~l-~~~~l~~~~~~~~D~viiDtpp~~~~--d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~----~~~~~ 233 (295)
T 1ls1_A 164 SPESI-RRRVEEKARLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALS----VARAF 233 (295)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHH----HHHHH
T ss_pred CHHHH-HHHHHHHHHhCCCCEEEEeCCCCccc--cHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHH----HHHHH
Confidence 00011 11112222224789999999986432 11112222222222346888899997642 22221 11222
Q ss_pred hhcCCCeEEEeeccccCC
Q 020549 228 YKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 228 ~~~~~p~ilv~NK~Dl~~ 245 (324)
...-...-+|+||+|...
T Consensus 234 ~~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 234 DEKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHTCCCEEEEECGGGCS
T ss_pred hhcCCCCEEEEECCCCCc
Confidence 221122457999999754
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.68 E-value=1.3e-07 Score=81.92 Aligned_cols=110 Identities=11% Similarity=-0.025 Sum_probs=73.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc---------ccch-----h
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA---------NIDI-----R 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~---------~~~~-----~ 121 (324)
...+.+++|+|++|||||||++.|++...+..+.+.+.+.+... ...+..+ ++.. .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~ 104 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDY 104 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCC
Confidence 35678899999999999999999999987777777765543211 0000000 0100 0
Q ss_pred cHHHHHHHHHHcCCCCCCcc---------cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 DTIRYKEVMKQFNLGPNGGI---------LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++.+++...... -.....+|.|++|++.++++...+++++|+|.|-
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPt 167 (243)
T 1mv5_A 105 TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167 (243)
T ss_dssp CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 12234566667776442211 1123469999999999999999999999999884
No 257
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.66 E-value=2.5e-07 Score=80.45 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc----ccchh-----------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA----NIDIR----------- 121 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~----~~~~~----------- 121 (324)
..+..++|+|++|||||||++.|++...+. +.+.+.+.+... ...+... ...++
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT 102 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCC
Confidence 467789999999999999999999987776 666655433210 0000000 00011
Q ss_pred cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCC-------EEEEeCCC
Q 020549 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-------YVLVDTPG 175 (324)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~liDtpG 175 (324)
....+.++++.+++..... .....+|.|++|++.++.+...+++ ++|+|.|-
T Consensus 103 ~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt 161 (249)
T 2qi9_C 103 RTELLNDVAGALALDDKLG--RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161 (249)
T ss_dssp CHHHHHHHHHHTTCGGGTT--SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred cHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence 1234567888888864322 2334699999999999999998999 99999985
No 258
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.66 E-value=1.3e-07 Score=82.09 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=70.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chh----------c
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIR----------D 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~----------~ 122 (324)
...+.+++|+|++|||||||++.|++...+..+.+.+.+.+.... ..+....+ .++ .
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~ 111 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS 111 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCC
Confidence 346778999999999999999999999877777666655432110 00000000 011 1
Q ss_pred HHHHHHHHHHcCCCCCC-----c----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 TIRYKEVMKQFNLGPNG-----G----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ~~~~~~~~~~~~l~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++.... | .-.....+|.|++|++.++++...+++++|+|.|-
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPt 173 (247)
T 2ff7_A 112 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173 (247)
T ss_dssp HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 11233445555442110 0 11123469999999999999999999999999885
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.66 E-value=1.4e-07 Score=84.16 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=78.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccC-CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (324)
.++..|+++|++|+||||++..|.+.... .+..+.++..|+... . ..+. ...+.+..++.... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~----~----a~eq--L~~~~~~~gl~~~~----~- 167 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI----A----AVEQ--LKTYAELLQAPLEV----C- 167 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST----T----HHHH--HHHHHTTTTCCCCB----C-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc----h----HHHH--HHHHHHhcCCCeEe----c-
Confidence 35678999999999999999999988764 566777776665211 0 0111 11112222221110 0
Q ss_pred cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (324)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~ 225 (324)
... .. +..+.....+++++|+||||.... .......+.+.+.....+-+++|+|+..+......+ +.
T Consensus 168 --~~~--~~-l~~al~~~~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~------~~ 234 (296)
T 2px0_A 168 --YTK--EE-FQQAKELFSEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI------VK 234 (296)
T ss_dssp --SSH--HH-HHHHHHHGGGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH------TT
T ss_pred --CCH--HH-HHHHHHHhcCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH------HH
Confidence 111 11 111111235789999999996532 111122232332222356788999887543222211 11
Q ss_pred HHhhcCCCeEEEeeccccCC
Q 020549 226 ILYKTRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 226 ~~~~~~~p~ilv~NK~Dl~~ 245 (324)
.+...+. .-+|+||+|...
T Consensus 235 ~~~~l~~-~giVltk~D~~~ 253 (296)
T 2px0_A 235 RFSSVPV-NQYIFTKIDETT 253 (296)
T ss_dssp TTSSSCC-CEEEEECTTTCS
T ss_pred HHhcCCC-CEEEEeCCCccc
Confidence 2222222 356779999764
No 260
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.62 E-value=4.9e-08 Score=88.09 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCC-------C--CCCchhHHHhHHHHHHH-HhhcCCCe
Q 020549 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP-------R--SANPMTFMSNMLYACSI-LYKTRLPL 234 (324)
Q Consensus 165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~-------~--~~~~~~~~~~~~~~~~~-~~~~~~p~ 234 (324)
+..+.+|||+||+++. .... .++ ..++.++||+|.+ + .......+...+..+.. ....+.|+
T Consensus 166 ~v~l~iwDtgGQe~~R--~~w~----~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i 237 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSER--RKWI----HCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 237 (327)
T ss_dssp TEEEEEEEECCSHHHH--TTGG----GGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred ceeeEEEEcCCchhHH--HHHH----HHh--CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence 3567899999998762 1111 111 2357899999654 1 12222223222221111 11256899
Q ss_pred EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-------hccCceeeeccccCCChHHHHHH
Q 020549 235 VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-------YKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 235 ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
+|++||+|+....... ..+. .-+..-.+......+....+...| ...+.++++||+++.||+.+|..
T Consensus 238 iL~~NK~DL~~~ki~~---~~l~---~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 238 ILFLNKKDLLEEKIMY---SHLV---DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp EEEEECHHHHHHHTTT---SCGG---GTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred EEEEECchhhhhhhcc---chHh---hhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 9999999986432100 0000 000000000000000000000011 12356788999999999999999
Q ss_pred HHHHHHHH
Q 020549 308 VEESAQEF 315 (324)
Q Consensus 308 i~~~~~~~ 315 (324)
+.+.+...
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99987653
No 261
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.62 E-value=1.6e-07 Score=82.51 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=69.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc--cCCcceEEEeccCCccc-----------ccccccc----------cc---
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAVM-----------TLPFAAN----------ID--- 119 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~--~~~~~~~~i~~~d~~~~-----------~~~~~~~----------~~--- 119 (324)
...+.+++|+|++|||||||++.|++.. .+..+.+.+.+.+.... ..+.... +.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~ 122 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL 122 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence 3567789999999999999999999973 33444555444322100 0000000 00
Q ss_pred --h-----------hc-HHHHHHHHHHcCCCC-CCccccccc-ccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 120 --I-----------RD-TIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 120 --~-----------~~-~~~~~~~~~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. .. ...+.++++.+++.. .... ... .+|.|++|++.++.+...+++++|+|.|-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt 192 (267)
T 2zu0_C 123 NAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192 (267)
T ss_dssp HHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS--BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC--CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 0 00 123557788888853 2211 122 49999999999999999999999999985
No 262
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.61 E-value=2.3e-07 Score=82.23 Aligned_cols=104 Identities=26% Similarity=0.399 Sum_probs=65.0
Q ss_pred EeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHH
Q 020549 171 VDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFAL 250 (324)
Q Consensus 171 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~ 250 (324)
-..||+... ....+.+.+ ..+|++++|+|++......... +. ..+ .++|.++|+||+|+++.....
T Consensus 4 ~w~PGhm~k-----a~~~~~~~l--~~aDvVl~VvDAr~p~~~~~~~---l~--~~l--~~kp~ilVlNK~DL~~~~~~~ 69 (282)
T 1puj_A 4 QWFPGHMAK-----ARREVTEKL--KLIDIVYELVDARIPMSSRNPM---IE--DIL--KNKPRIMLLNKADKADAAVTQ 69 (282)
T ss_dssp -----CTTH-----HHHHHHHHG--GGCSEEEEEEETTSTTTTSCHH---HH--HHC--SSSCEEEEEECGGGSCHHHHH
T ss_pred cCCchHHHH-----HHHHHHHHH--hhCCEEEEEEeCCCCCccCCHH---HH--HHH--CCCCEEEEEECcccCCHHHHH
Confidence 347886542 112233333 3479999999998765443211 11 111 579999999999999865433
Q ss_pred HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549 251 EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (324)
Q Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~ 315 (324)
.+.+.++ ..+.+++++||++|.|+++|++.|.+.+...
T Consensus 70 ~~~~~~~---------------------------~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 70 QWKEHFE---------------------------NQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHHHH---------------------------TTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------------hcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 3332221 1246899999999999999999998887654
No 263
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.60 E-value=1.6e-07 Score=84.09 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=55.5
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 275 (324)
..+|.+++|+|+.+.......+..++ ..+...++|+++|+||+|+.+..... ..+......+
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~~~l---~~~~~~~~~~ilV~NK~DL~~~~~v~-~~~~~~~~~~-------------- 139 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLDNML---VVYEYFKVEPVIVFNKIDLLNEEEKK-ELERWISIYR-------------- 139 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHHHHH---HHHHHTTCEEEEEECCGGGCCHHHHH-HHHHHHHHHH--------------
T ss_pred HhcCEEEEEEECCCCCCCHHHHHHHH---HHHHhCCCCEEEEEEcccCCCccccH-HHHHHHHHHH--------------
Confidence 45799999999986532222222222 23344789999999999998764211 0111110000
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~ 309 (324)
. .+.+++++||++|.|+++|+..+.
T Consensus 140 -------~--~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 -------D--AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -------H--TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred -------H--CCCeEEEEECCCCCCHHHHHhhcc
Confidence 1 146899999999999999998764
No 264
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.60 E-value=1.7e-07 Score=84.62 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=79.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (324)
...++|+|++|||||||++.|.+.. .+.++.++..+.+...+....-..... .+..-.+||+||+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~---------~~~el~~gCicc~~~-- 70 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRAT---------QIKTLTNGCICCSRS-- 70 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSC---------EEEEETTSCEEECTT--
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCC---------CEEEECCCceEEccc--
Confidence 4579999999999999999999874 344555554444332221111000000 001114688999743
Q ss_pred ChHHHHHHHHHH--HHhC--CCCEEEEeCCCCcchhhhhhhHHHH-H-HHH-hccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549 149 TTKFDEVISLIE--RRAD--HLDYVLVDTPGQIEIFTWSASGAII-T-EAF-ASTFPTVVTYVVDTPRSANPMTFMSNML 221 (324)
Q Consensus 149 ~~~~~~~~~~~~--~~~~--~~~~~liDtpG~~~~~~~~~~~~~~-~-~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~ 221 (324)
..+...+..+. .... .++++++++.|..++.. ....+ . ... .....+-++-++|+.+...... . +
T Consensus 71 -~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~---~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~---~-l 142 (318)
T 1nij_A 71 -NELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN---Q-F 142 (318)
T ss_dssp -SCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH---HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH---H-C
T ss_pred -HHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH---HHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh---h-c
Confidence 23333343331 1122 34899999999765411 10001 0 111 1122356778888854321111 0 0
Q ss_pred HHHHHHhhcCCCeEEEeeccccCCh
Q 020549 222 YACSILYKTRLPLVLAFNKTDVAQH 246 (324)
Q Consensus 222 ~~~~~~~~~~~p~ilv~NK~Dl~~~ 246 (324)
. .-..+...+-++++||.|+.+.
T Consensus 143 s--~g~~Q~~~ad~ill~k~dl~de 165 (318)
T 1nij_A 143 T--IAQSQVGYADRILLTKTDVAGE 165 (318)
T ss_dssp H--HHHHHHHTCSEEEEECTTTCSC
T ss_pred h--HHHHHHHhCCEEEEECcccCCH
Confidence 0 0112222455778899999965
No 265
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.58 E-value=2e-07 Score=83.37 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=69.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcH---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDT--------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~--------- 123 (324)
...+.+++|+|++|||||||++.|.+...+..+.+.+.+.+.... ..+..+.+ .+++.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~ 156 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG 156 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCC
Confidence 356788999999999999999999998877776666655443210 00000000 01111
Q ss_pred -HHHHHHHHHcCCCCC-----Cc----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 -IRYKEVMKQFNLGPN-----GG----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 -~~~~~~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++..++... .| +-..-..+|.|++|++.++++...+++++|+|.|-
T Consensus 157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt 218 (306)
T 3nh6_A 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT 218 (306)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 122333443333210 01 11122359999999999999999999999999885
No 266
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.57 E-value=2.1e-07 Score=81.01 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=66.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc--ccCCcceEEEeccCCcc-----------cccccccc----cchhc-------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAV-----------MTLPFAAN----IDIRD------- 122 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~--~~~~~~~~~i~~~d~~~-----------~~~~~~~~----~~~~~------- 122 (324)
..+..++|+|++|||||||++.|++. ..+..+.+.+.+.+... ...+..+. ..+++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 106 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQ 106 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHH
Confidence 46778999999999999999999996 44555566655443210 00011100 00001
Q ss_pred ------------HHHHHHHHHHcCCC-CCCcccccccc-cChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 ------------TIRYKEVMKQFNLG-PNGGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ------------~~~~~~~~~~~~l~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++. .... ..... +|.|++|++.++.+...+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 171 (250)
T 2d2e_A 107 AKLGREVGVAEFWTKVKKALELLDWDESYLS--RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD 171 (250)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG--SBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred hhccccCCHHHHHHHHHHHHHHcCCChhHhc--CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11345677778874 2211 22235 9999999999999999999999999884
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.55 E-value=5.5e-07 Score=80.54 Aligned_cols=42 Identities=31% Similarity=0.513 Sum_probs=35.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
..++..++++|++|||||||++.|++...+.++.+.+.+.|.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 456788999999999999999999998877777888776654
No 268
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.54 E-value=1.6e-07 Score=83.49 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=65.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec------cCCcccccccccccc-hh-cHHHHHHHHHHcCCCC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANID-IR-DTIRYKEVMKQFNLGP 137 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~------~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~ 137 (324)
...+.+++|+|++|||||||++.|++...+..+.+.+.+ .++.....+...++. .. .......+++.+++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~ 140 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE 140 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence 356788999999999999999999998766555443321 122111101000110 00 0111223333333321
Q ss_pred C-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 138 N-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 138 ~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. .+. -.....+|.|++|++.++++...+++++|+|.|-
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 141 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 0 000 0112469999999999999999999999999985
No 269
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.52 E-value=1e-06 Score=80.48 Aligned_cols=42 Identities=31% Similarity=0.513 Sum_probs=35.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
..++..|+|+|++|||||||++.|++...+.++.+.+.+.|.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 356788999999999999999999998877777887776653
No 270
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.52 E-value=5.1e-07 Score=87.08 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc--ccchhc-------------HHHHHHHHH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA--NIDIRD-------------TIRYKEVMK 131 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~-------------~~~~~~~~~ 131 (324)
.++.+++|+|++|||||||++.|++...+..+.+.+.+............ ...+.+ .....++++
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~ 371 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTK 371 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHH
Confidence 46788999999999999999999998777665554322211110000000 000011 112344555
Q ss_pred HcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+++... .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 372 ~~~l~~~--~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 372 RLNLHRL--LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp TTTGGGC--TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HcCCHHH--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 5555432 22344579999999999999999999999999885
No 271
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.50 E-value=1.2e-07 Score=83.95 Aligned_cols=28 Identities=21% Similarity=0.530 Sum_probs=24.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..+.+|+++|.||||||||+|+|.+...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce
Confidence 4568899999999999999999998753
No 272
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.49 E-value=3e-07 Score=84.98 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=71.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------------cccc--cccc---hhcH
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------LPFA--ANID---IRDT 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------------~~~~--~~~~---~~~~ 123 (324)
...+.+++|+|++|||||||++.|.+... ..+.+.+.+.+..... ++.+ .++. ....
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~ 122 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSD 122 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCH
Confidence 45678899999999999999999999765 5556655554322100 0000 0110 0112
Q ss_pred HHHHHHHHHcCCCCCCccccc---------ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 IRYKEVMKQFNLGPNGGILTS---------LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++.+++......... -..+|.|++|++.++++...+++++|+|.|-
T Consensus 123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPt 183 (390)
T 3gd7_A 123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183 (390)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHH
T ss_pred HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 245567777776432111111 0129999999999999999999999999984
No 273
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.45 E-value=2.3e-06 Score=74.83 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=67.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccccc---chhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~---~~~~---------- 122 (324)
...+..++|+|++|||||||++.|++...+ .+.+.+.+.+... ...+..+.+ .+++
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~ 121 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 121 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCC
Confidence 456788999999999999999999998654 4555554433210 000000000 0111
Q ss_pred HHHHHHHHHHcCCCCC-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 TIRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ~~~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++.+++... .+. -.....+|.|++|++.++++...+++++|+|.|-
T Consensus 122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 183 (260)
T 2ghi_A 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 1123344555544210 111 1123469999999999999999999999999885
No 274
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.45 E-value=2e-06 Score=84.12 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE------EEeccCCcc-cccccccccc-h-----hcHHHHHHHHHHc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAV-MTLPFAANID-I-----RDTIRYKEVMKQF 133 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~------~i~~~d~~~-~~~~~~~~~~-~-----~~~~~~~~~~~~~ 133 (324)
..+.+++|+|++|+|||||++.|.+...+..+.+ ..+-.++.. ...+....+. . .....+.++++.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999866543322 222222211 0000000000 0 0112345678888
Q ss_pred CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
++.... ......+|.|++|++.++.+....++++|+|.|-
T Consensus 460 ~l~~~~--~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 460 GIIDLY--DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp TCTTTT--TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCchHh--cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 886432 2344579999999999999999999999999985
No 275
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.40 E-value=9.7e-07 Score=85.11 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=69.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE-----------EEeccCCc----------------cccccccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-----------YVMNLDPA----------------VMTLPFAANI 118 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~-----------~i~~~d~~----------------~~~~~~~~~~ 118 (324)
..++..++|+|++|||||||++.|++...+..+.+ .+.+.+.. ..........
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 45678899999999999999999999865543322 00000000 0000000000
Q ss_pred ---chhc-------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 119 ---DIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 119 ---~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.. .....++++.+++.... ......+|.|++|++.++.+...+++++|+|.|-
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~--~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLW--NKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGT--TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0011 11345778888875432 2344569999999999999999999999999885
No 276
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.39 E-value=3.8e-06 Score=81.92 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=71.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccccc---chh-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DIR----------- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~---~~~----------- 121 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+... ...+..+.+ .++
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 445 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY 445 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCC
Confidence 35678899999999999999999999887777777665543210 000111000 011
Q ss_pred cHHHHHHHHHHcCCCCC-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 DTIRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ~~~~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++..++..- .|. -..-..+|.|++|++..+++...+++++++|.|-
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt 508 (582)
T 3b5x_A 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508 (582)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 11223445555544211 011 1112359999999999999999999999999985
No 277
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.36 E-value=1.3e-06 Score=85.15 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chh-----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIR----------- 121 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~----------- 121 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.... ..+..+.+ .++
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 445 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 445 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCC
Confidence 356788999999999999999999998877777766655432110 00100000 011
Q ss_pred cHHHHHHHHHHcCCCCC-----Cc----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 122 DTIRYKEVMKQFNLGPN-----GG----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 122 ~~~~~~~~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
....+.++++..++..- .| +-..-..+|.|++|++.++++...+++++++|.|-
T Consensus 446 ~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpt 508 (582)
T 3b60_A 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_dssp CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 11233445555544210 01 11122359999999999999999999999999985
No 278
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.36 E-value=1.6e-06 Score=84.88 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=72.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccc---------ccch------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAA---------NIDI------ 120 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~---------~~~~------ 120 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.... ..+..+ ++..
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 446 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPS 446 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCcc
Confidence 356788999999999999999999998877777666655432110 001000 1100
Q ss_pred -hcHHHHHHHHHHcCCCC-----CCccccc----ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 121 -RDTIRYKEVMKQFNLGP-----NGGILTS----LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 121 -~~~~~~~~~~~~~~l~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+...+.++++..++.. ..|.... -..+|.|++|++.++++...+++++++|.|-
T Consensus 447 ~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpt 511 (595)
T 2yl4_A 447 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT 511 (595)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred ccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 11223456666665421 1122211 1469999999999999999999999999985
No 279
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.35 E-value=5e-06 Score=81.21 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=68.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcce------EEEeccCCccccccccc--cc------chhcHHHHHHHHHHcC
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR------GYVMNLDPAVMTLPFAA--NI------DIRDTIRYKEVMKQFN 134 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~------~~i~~~d~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~ 134 (324)
+.+++|+|++|+|||||++.|.+...+..+. +..+..+... ..+.+. .+ .........++++.++
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP-KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCC-CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccc-cCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 3679999999999999999999987665432 1111111110 000000 00 0012223456788888
Q ss_pred CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 135 LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 457 l~~~~~--~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 457 IDDIID--QEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp STTTSS--SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred Chhhhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 765322 334469999999999999999999999999885
No 280
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.34 E-value=3.1e-06 Score=82.46 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=69.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhc----------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRD---------- 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~---------- 122 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.... ..+..+.+ .+++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 443 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 443 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCC
Confidence 356788999999999999999999999888777666655432110 00000000 0111
Q ss_pred HHHHHHHHHHcCCCCC-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 TIRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ~~~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++..++... .|. -..-..+|.|++|++..+++...+++++++|.|-
T Consensus 444 ~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpt 505 (578)
T 4a82_A 444 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505 (578)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 1123344444433110 011 1112359999999999999999999999999885
No 281
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.32 E-value=5.1e-06 Score=81.09 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=69.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcH---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDT--------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~--------- 123 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+..... .+..+.+ .+++.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~ 445 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDAT 445 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCC
Confidence 3567889999999999999999999998887777776555432110 0000000 01111
Q ss_pred -HHHHHHHHHcCCC---------CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 -IRYKEVMKQFNLG---------PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 -~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.++++..++. .+.-+-..-..+|.|++|++.++++...+++++++|.|-
T Consensus 446 ~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 446 DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1222333333221 111111222359999999999999999999999999885
No 282
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.32 E-value=2.8e-06 Score=81.95 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE------EEeccCCccccccccc--ccc-h-----hcHHHHHHHHHH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAVMTLPFAA--NID-I-----RDTIRYKEVMKQ 132 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~------~i~~~d~~~~~~~~~~--~~~-~-----~~~~~~~~~~~~ 132 (324)
.++.+++|+|++|+|||||++.|++...+..+.+ ..+-.++... ...+. .+. . .....+.++++.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD-YEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4678899999999999999999999876544322 2222222110 00010 000 0 011123445666
Q ss_pred cCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
+++.. ........+|.|++|++.++.+....++++|+|.|-
T Consensus 389 ~~l~~--~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 389 LGIID--LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp TTCGG--GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCChh--hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 66643 223344579999999999999999999999999985
No 283
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.31 E-value=5.9e-07 Score=78.70 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=54.5
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 275 (324)
..+|++++|+|++......... + . +. ++|.++|+||+|+++......+.+.++
T Consensus 20 ~~~D~vl~VvDar~P~~~~~~~---l---~-ll--~k~~iivlNK~DL~~~~~~~~~~~~~~------------------ 72 (262)
T 3cnl_A 20 RLVNTVVEVRDARAPFATSAYG---V---D-FS--RKETIILLNKVDIADEKTTKKWVEFFK------------------ 72 (262)
T ss_dssp TTCSEEEEEEETTSTTTTSCTT---S---C-CT--TSEEEEEEECGGGSCHHHHHHHHHHHH------------------
T ss_pred hhCCEEEEEeeCCCCCcCcChH---H---H-hc--CCCcEEEEECccCCCHHHHHHHHHHHH------------------
Confidence 4579999999998765443211 1 1 11 799999999999998754444433222
Q ss_pred HHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (324)
Q Consensus 276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~ 310 (324)
. .+.++ ++||++|.|+++|++.|..
T Consensus 73 -------~--~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 -------K--QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -------H--TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred -------H--cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 1 24567 9999999999999887654
No 284
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.30 E-value=2.5e-06 Score=82.27 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=69.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE---------EEeccCC------------cc-------cccccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AV-------MTLPFAAN 117 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~---------~i~~~d~------------~~-------~~~~~~~~ 117 (324)
...+.+++|+|++|||||||++.|.+...+..+.. .+.+.+. .+ ...+....
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 123 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVK 123 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhh
Confidence 45778899999999999999999999765543321 0000000 00 00000000
Q ss_pred cchhcH-------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 118 IDIRDT-------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 118 ~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+... ..+.++++.+++..... .....+|.|++|++.++.+...+++++|+|.|-
T Consensus 124 ~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~--~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPT 186 (538)
T 1yqt_A 124 GKVIELLKKADETGKLEEVVKALELENVLE--REIQHLSGGELQRVAIAAALLRNATFYFFDEPS 186 (538)
T ss_dssp SBHHHHHHHHCSSSCHHHHHHHTTCTTTTT--SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccHHHHHhhhhHHHHHHHHHHHcCCChhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 001111 13567888888865322 334569999999999999999999999999885
No 285
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=3e-07 Score=80.60 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.+++++|.+|+|||||+|+|.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998754
No 286
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.27 E-value=6.5e-07 Score=86.82 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..+|+|+|.||+|||||+|+|++..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 45779999999999999999999875
No 287
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5.7e-06 Score=80.79 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=70.8
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEE-----------EeccCC-------------------cccccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDP-------------------AVMTLPFA 115 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~-----------i~~~d~-------------------~~~~~~~~ 115 (324)
...+..++|+|++|+|||||++.|.+...+..+.+. +.+.+. .+...+..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 356788999999999999999999998766544320 000000 00000000
Q ss_pred c-----cc-------chhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 116 A-----NI-------DIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 116 ~-----~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
. .+ ..+....+.++++.+++.... -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL--KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGG--GSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchh--CCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 0 00 001123566788888886532 2334569999999999999999999999999885
No 288
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.26 E-value=1.1e-06 Score=71.75 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=21.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHH
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLV 90 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~ 90 (324)
.++..++|+|++|||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 467789999999999999999654
No 289
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.25 E-value=3.7e-06 Score=82.25 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=68.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc---cchhcHH--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN---IDIRDTI-------- 124 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~---~~~~~~~-------- 124 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+..... .+..+. ..+++.+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~ 457 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGAT 457 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCC
Confidence 4567899999999999999999999998887777666554431100 000000 0111111
Q ss_pred --HHHHHHHHcCCCC-----CCccc----ccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 125 --RYKEVMKQFNLGP-----NGGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 125 --~~~~~~~~~~l~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.++++..++.. -.|.. ..-..+|.|++|++.++++...+++++++|.|-
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 458 DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 1122222222210 00111 111359999999999999999999999999885
No 290
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.24 E-value=2.8e-06 Score=78.12 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHH
Q 020549 198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNS 276 (324)
Q Consensus 198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~ 276 (324)
++++++|+|+.+. ...|...+. .+. .++|+++|+||+|+.+.....+ ..+.+....+
T Consensus 70 ~~~il~VvD~~d~---~~~~~~~l~---~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~--------------- 127 (368)
T 3h2y_A 70 DALVVKIVDIFDF---NGSWLPGLH---RFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK--------------- 127 (368)
T ss_dssp CCEEEEEEETTSH---HHHCCTTHH---HHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH---------------
T ss_pred CcEEEEEEECCCC---cccHHHHHH---HHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH---------------
Confidence 4799999999752 233333332 121 3789999999999986542111 1111111000
Q ss_pred HHHhHHHH-hccCceeeeccccCCChHHHHHHHHHHH
Q 020549 277 LSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 277 ~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
.. +...+++++||++|.|+++|++.|.+..
T Consensus 128 ------~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 ------QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ------HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 10 1113789999999999999999997654
No 291
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.24 E-value=6.8e-06 Score=68.59 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=74.8
Q ss_pred EEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCC-ccccccccc
Q 020549 71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG-GILTSLNLF 148 (324)
Q Consensus 71 ~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 148 (324)
.|+|. +..|+||||+.-.|.......+.++.++..|+.-... .++ +....+ .+... -
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~---------------~~~---~~~~~~~~~~~~---~ 61 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT---------------NWS---KAGKAAFDVFTA---A 61 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH---------------HHH---TTSCCSSEEEEC---C
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH---------------HHH---hcCCCCCcEEec---C
Confidence 46666 5799999999999988766667788887776532110 011 111111 01110 1
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 228 (324)
...+ ...+......++++|+|||+..... ....+ ..+|.+++++...... . .....+..+..+.
T Consensus 62 ~~~l---~~~l~~l~~~yD~viiD~~~~~~~~--------~~~~l--~~ad~viiv~~~~~~~-~--~~~~~~~~l~~~~ 125 (206)
T 4dzz_A 62 SEKD---VYGIRKDLADYDFAIVDGAGSLSVI--------TSAAV--MVSDLVIIPVTPSPLD-F--SAAGSVVTVLEAQ 125 (206)
T ss_dssp SHHH---HHTHHHHTTTSSEEEEECCSSSSHH--------HHHHH--HHCSEEEEEECSCTTT-H--HHHHHHHHHHTTS
T ss_pred cHHH---HHHHHHhcCCCCEEEEECCCCCCHH--------HHHHH--HHCCEEEEEecCCHHH-H--HHHHHHHHHHHHH
Confidence 1222 2333334557899999999854321 11111 1258989988875433 2 1222222222221
Q ss_pred --hcCCCeEEEeeccccC
Q 020549 229 --KTRLPLVLAFNKTDVA 244 (324)
Q Consensus 229 --~~~~p~ilv~NK~Dl~ 244 (324)
..+.++.+|+|++|..
T Consensus 126 ~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 126 AYSRKVEARFLITRKIEM 143 (206)
T ss_dssp CGGGCCEEEEEECSBCTT
T ss_pred HhCCCCcEEEEEeccCCC
Confidence 2346779999999954
No 292
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.23 E-value=9.5e-06 Score=79.29 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=69.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE---------EEeccCC------------cc-------cccccccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AV-------MTLPFAAN 117 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~---------~i~~~d~------------~~-------~~~~~~~~ 117 (324)
...+.+++|+|++|+|||||++.|.+...+..+.. .+.+.+. .+ ...+....
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 193 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK 193 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcc
Confidence 35778899999999999999999999865543331 0001000 00 00000000
Q ss_pred cchhcH-------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 118 IDIRDT-------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 118 ~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.+. ..+.++++.+++.... -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus 194 ~tv~e~l~~~~~~~~~~~~L~~lgL~~~~--~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 194 GKVRELLKKVDEVGKFEEVVKELELENVL--DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp SBHHHHHHHTCCSSCHHHHHHHTTCTTGG--GSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred ccHHHHhhhhHHHHHHHHHHHHcCCCchh--CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 000111 1346788888886432 2334569999999999999999999999999885
No 293
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.20 E-value=1.1e-05 Score=85.56 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=84.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcH---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDT--------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~--------- 123 (324)
-+++.+|+|+|++|||||||++.|.+...+..+.+.+.+.|..... .|..+.+ .+|+.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~ 1181 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSS 1181 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCC
Confidence 3567899999999999999999999988887777777665432110 1111100 01211
Q ss_pred ---HHHHHHHHHcCCCC-----CCcccccc----cccChHHHHHHHHHHHHhCCCCEEEEeCCCCc-chhhhhhhHHHHH
Q 020549 124 ---IRYKEVMKQFNLGP-----NGGILTSL----NLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIIT 190 (324)
Q Consensus 124 ---~~~~~~~~~~~l~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~ 190 (324)
..+.++++..++.. ..|.-+.+ ..||.|++|++.++++...+++++++|.|--. +. .....+.
T Consensus 1182 ~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~----~tE~~Iq 1257 (1321)
T 4f4c_A 1182 VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT----ESEKVVQ 1257 (1321)
T ss_dssp SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS----HHHHHHH
T ss_pred CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH----HHHHHHH
Confidence 12344555544421 12222211 24999999999999999999999999988632 21 2233445
Q ss_pred HHHhccCCcEEEEEEc
Q 020549 191 EAFASTFPTVVTYVVD 206 (324)
Q Consensus 191 ~~~~~~~~d~iv~vvD 206 (324)
+.++....+..+++|.
T Consensus 1258 ~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1258 EALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HHHTTTSSSSEEEEEC
T ss_pred HHHHHHcCCCEEEEec
Confidence 5555544555556553
No 294
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.15 E-value=4.5e-06 Score=76.75 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHH
Q 020549 198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNS 276 (324)
Q Consensus 198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~ 276 (324)
++++++|+|+++.. ..|...+. ..+ .++|+++|+||+|+.+.+...+ ..+.+....+
T Consensus 72 ~~lil~VvD~~d~~---~s~~~~l~--~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~--------------- 129 (369)
T 3ec1_A 72 KALVVNIVDIFDFN---GSFIPGLP--RFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE--------------- 129 (369)
T ss_dssp CCEEEEEEETTCSG---GGCCSSHH--HHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH---------------
T ss_pred CcEEEEEEECCCCC---CchhhHHH--HHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH---------------
Confidence 47999999997644 22222221 111 3789999999999987532111 1111111000
Q ss_pred HHHhHHHH-hccCceeeeccccCCChHHHHHHHHHHH
Q 020549 277 LSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (324)
Q Consensus 277 ~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~~~ 312 (324)
.. +...+++++||++|.|+++|++.|.+..
T Consensus 130 ------~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ------ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp ------TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ------HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 00 1113789999999999999999997754
No 295
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.13 E-value=2.6e-06 Score=76.17 Aligned_cols=82 Identities=9% Similarity=0.130 Sum_probs=56.0
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHh----HHHHHHhHHHHHHHHhcCccchh
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYTS 271 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 271 (324)
+..|.+++|+|+..+......+...+ ......++|.++|+||+|+.+... ...+.+.+.
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L---~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-------------- 147 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-------------- 147 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHH---HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH--------------
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH--------------
Confidence 56799999999986655554333222 233457899999999999998643 222322221
Q ss_pred hHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549 272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (324)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~ 307 (324)
..+.+++++||++|.|+++|+..
T Consensus 148 -------------~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 -------------NIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp -------------HHTCCEEECCHHHHTTCTTTGGG
T ss_pred -------------hCCCeEEEEecCCCCCHHHHHhh
Confidence 12468999999999998877654
No 296
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=6.1e-06 Score=67.83 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred ccChHHHHHHHHHHH-----HhCCCCEEEEeCCC
Q 020549 147 LFTTKFDEVISLIER-----RADHLDYVLVDTPG 175 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~-----~~~~~~~~liDtpG 175 (324)
.+|.|+++++..+.+ ...+++++|+|.+|
T Consensus 76 ~lSgG~~qr~~la~aa~~~~l~~~p~llilDEig 109 (178)
T 1ye8_A 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred CcCHHHHHHHHHHhhccccccccCCCEEEEeCCC
Confidence 488999999999996 78899999999965
No 297
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.02 E-value=1.5e-05 Score=84.51 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=68.0
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcHH--------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDTI-------- 124 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~~-------- 124 (324)
-+++.+++|+|++|||||||++.|.+...+..+.+.+.+.+.... ..+..+.+ .+++.+
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~ 492 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT 492 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCC
Confidence 356789999999999999999999998877766666654432110 00100000 112111
Q ss_pred --HHHHHHHHcCC---------CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 125 --RYKEVMKQFNL---------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 125 --~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.++++..++ +.+.-+-..-..+|.|++|++.++++...+++++|+|.|-
T Consensus 493 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt 554 (1284)
T 3g5u_A 493 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554 (1284)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 12223332221 1111111112359999999999999999999999999885
No 298
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.01 E-value=9.3e-05 Score=65.95 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
+.+.+|+|.|..|+||||+.-.|.......+.++.++..|+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 355678888999999999999988877666788888888874
No 299
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.01 E-value=5e-05 Score=65.18 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=33.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
+|+|.|..|+||||+.-.|.......++++.++..|+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 47789999999999999998887777888988888874
No 300
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.01 E-value=1.6e-05 Score=84.53 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=70.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC-------------------cccccccccccch----hc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------------------AVMTLPFAANIDI----RD 122 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~-------------------~~~~~~~~~~~~~----~~ 122 (324)
-+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.|. ...+-+...++.. .+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~ 520 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT 520 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccch
Confidence 356788999999999999999999999888777766654432 1111111111100 11
Q ss_pred HHHHHHHHHHcCC---------CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 123 TIRYKEVMKQFNL---------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 123 ~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
...+.++++..++ +.+.-+-..=..+|.|++|++.++++...+++++++|.|-
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 2233444544332 1111011111248999999999999999999999999885
No 301
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=4.4e-05 Score=77.87 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=66.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccC-----CcceEEEeccCC--cccccccccccc--hh-cHHHHHHHHHHcCCC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDP--AVMTLPFAANID--IR-DTIRYKEVMKQFNLG 136 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-----~~~~~~i~~~d~--~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~ 136 (324)
.++.+++|+|++|+|||||++.|.+.... .......+..++ .....+....+. .. ....+.++++.+++.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 45778999999999999999999964221 001111111111 000000000000 00 023456788888874
Q ss_pred CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 137 PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.. -.......+|.|++|++.++.+...+++++|+|.|-
T Consensus 539 ~~-~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 539 DE-MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp HH-HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred hh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 21 012233469999999999999999999999999985
No 302
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.95 E-value=1.1e-05 Score=82.19 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.+.++++.+++............+|.|++|++.++.+...+++++|+|.|-
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT 929 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGG
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 356678888875321112234469999999999999999999999999984
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.89 E-value=1.4e-06 Score=78.24 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=61.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCc--ceEEEeccCCccccccccccc------c---hhcHHHHHHHHHHcC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAVMTLPFAANI------D---IRDTIRYKEVMKQFN 134 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~ 134 (324)
..++..|+|+|++|||||||++.|.+...+.. ..+.++..|......+....+ + ..+...+.+.++.++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 45778999999999999999999998765432 233343333322111100000 0 012234455666665
Q ss_pred CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549 135 LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (324)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 176 (324)
.... ......+|.++++++..+.+....++++|+|-|-.
T Consensus 167 -~~~~--~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~ 205 (312)
T 3aez_A 167 -SGSD--YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNV 205 (312)
T ss_dssp -TTCS--CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTT
T ss_pred -CCcc--cCCcccCChhhhhhhhhHHHhccCCCEEEECCccc
Confidence 2111 12223577777776655444556778888888854
No 304
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.7e-06 Score=78.74 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcc-e-EEEeccCCc--cccccccc-------ccchhcHH-----------
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-R-GYVMNLDPA--VMTLPFAA-------NIDIRDTI----------- 124 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~-~-~~i~~~d~~--~~~~~~~~-------~~~~~~~~----------- 124 (324)
..+.+++|+|++|||||||++.|++...+.++ . +.+.+ ++. +...+... ..++++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~ 214 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATL 214 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhhcccccccCcch
Confidence 35778999999999999999999998766666 5 54433 221 11111110 00111100
Q ss_pred --HHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHH--HhCCCCE----EEEeCCC
Q 020549 125 --RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER--RADHLDY----VLVDTPG 175 (324)
Q Consensus 125 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~liDtpG 175 (324)
.+.++++.+++.... ....+|.|++|++..+.+ ...++++ +|+|+|+
T Consensus 215 ~~~~~~ll~~~gl~~~~----~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 215 LHNKQPMVKNFGLERIN----ENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp SCCBCCEECCCCSSSGG----GCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred HHHHHHHHHHhCCCccc----chhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 001112222222111 134689999999999999 8889999 9999944
No 305
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.88 E-value=5.2e-05 Score=69.07 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=50.2
Q ss_pred cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHh---HHHHHHhHHHHHHHHhcCccchhh
Q 020549 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF---ALEWMQDFEVFQAAISSDHSYTST 272 (324)
Q Consensus 196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 272 (324)
+..|.+++| |+.........+. ..+......++|.+||+||+|+.+... ...+...+.
T Consensus 129 anvD~v~iv-~a~~P~~~~~~i~---r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~--------------- 189 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPELSLNIID---RYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR--------------- 189 (358)
T ss_dssp ECCCEEEEE-EESTTTCCHHHHH---HHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH---------------
T ss_pred hcCCEEEEE-EeCCCCCCHHHHH---HHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH---------------
Confidence 456888865 5544322222221 112223456899999999999998753 112221111
Q ss_pred HHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549 273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (324)
Q Consensus 273 l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i 308 (324)
..+.+++++||++|.|+++|...+
T Consensus 190 ------------~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 190 ------------NIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ------------TTTCCEEECBTTTTBTHHHHHHHH
T ss_pred ------------hCCCcEEEEecCCCcCHHHHHHhc
Confidence 124689999999999999987643
No 306
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.88 E-value=0.00016 Score=63.45 Aligned_cols=161 Identities=16% Similarity=0.279 Sum_probs=82.4
Q ss_pred CCcEEEEEcc-CCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccc----cccchhcHH----HHHHHHHH-----c
Q 020549 68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA----ANIDIRDTI----RYKEVMKQ-----F 133 (324)
Q Consensus 68 ~~~~v~iiG~-~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~----~~~~~~~~-----~ 133 (324)
....|+|.|. +|+||||+.-.|.......+.++.+++.|+........ ...++.+.+ ...+++.. +
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 3456788875 89999999999887766667788888877543221110 001111111 11111111 1
Q ss_pred CCCCCCcccccc-cc-cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC
Q 020549 134 NLGPNGGILTSL-NL-FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA 211 (324)
Q Consensus 134 ~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~ 211 (324)
.+-+.+...... +. -+..+.+.+..+. ..++++|+|||+.... .....+.. .+|.+++|+.....
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~---~~yD~VIIDtpp~~~~----~d~~~l~~-----~aD~vilVv~~~~~- 227 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL---MNYNFVIIDTPPVNTV----TDAQLFSK-----FTGNVVYVVNSENN- 227 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH---HHCSEEEEECCCTTTC----SHHHHHHH-----HHCEEEEEEETTSC-
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH---hCCCEEEEeCCCCchH----HHHHHHHH-----HCCEEEEEEeCCCC-
Confidence 111111111100 00 1334444444443 4679999999985432 11111211 24889999987442
Q ss_pred CchhHHHhHHHHHHHHhhcCCCeE-EEeeccccCC
Q 020549 212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ 245 (324)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~ 245 (324)
..... ......+...+.+++ +|+|++|...
T Consensus 228 -~~~~~---~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 228 -NKDEV---KKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp -CHHHH---HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred -cHHHH---HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 22222 222345556677776 8999998643
No 307
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.84 E-value=3.6e-05 Score=81.55 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=68.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcH---------
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDT--------- 123 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~--------- 123 (324)
.+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.... -.+..+.+ .+++.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~ 1135 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCC
Confidence 456789999999999999999999998877766666655443210 01111100 01111
Q ss_pred ---HHHHHHHHHcCCCC-----CCcccc----cccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 124 ---IRYKEVMKQFNLGP-----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 124 ---~~~~~~~~~~~l~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
..+.+.++..++.. ..|.-+ .-..+|.|++|++.++++...+++++++|.|-
T Consensus 1136 ~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A 1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp CCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred CCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11222333322210 111111 11359999999999999999999999999885
No 308
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.83 E-value=0.00013 Score=63.02 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=30.9
Q ss_pred cEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 70 VIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 70 ~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
..|+|+| ..|+||||+.-.|.......++++.++..|+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3466655 69999999999998877767788888888874
No 309
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.83 E-value=2.6e-05 Score=65.23 Aligned_cols=91 Identities=8% Similarity=0.015 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCCCchhHHHhHHHHHH-HHhh----cCCCeEEEeecc-ccCChHhHHHHHHhHHHHHHHHhcCccchh
Q 020549 198 PTVVTYVVDTPRSANPMTFMSNMLYACS-ILYK----TRLPLVLAFNKT-DVAQHEFALEWMQDFEVFQAAISSDHSYTS 271 (324)
Q Consensus 198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~-~~~~----~~~p~ilv~NK~-Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (324)
.|.+|||||+.+.-.. . ...++..+. .+.. .+.|++|..||. |+...-...++.+.+.
T Consensus 126 TdglIfVVDSsD~~R~-e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~-------------- 189 (227)
T 3l82_B 126 VDGFIYVANAEAHKRH-E-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH-------------- 189 (227)
T ss_dssp CSEEEEEEECBTTCCC-C-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred CCEEEEEeccccHhHH-H-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC--------------
Confidence 5899999999765322 1 222222111 2221 468999999996 6754322222222221
Q ss_pred hHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.- .......|.+|||++|+|+.+-+++|.+.+.
T Consensus 190 -------L~--~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 190 -------LN--LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp -------GG--GGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred -------Cc--CCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 00 1112357899999999999999999987653
No 310
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.80 E-value=0.00015 Score=64.52 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=82.1
Q ss_pred CCcEEEEEcc-CCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc----ccchhcHH----HHHHHHHH-----c
Q 020549 68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA----NIDIRDTI----RYKEVMKQ-----F 133 (324)
Q Consensus 68 ~~~~v~iiG~-~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~----~~~~~~~~-----~ 133 (324)
.+..|+|+|. +|+||||+.-.|.......+.++.++..|+........- ..++.+.+ ...+++.. +
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 3456888885 899999999998877666677888887776322211100 01111111 11111111 1
Q ss_pred CCCCCCccccccc--ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC
Q 020549 134 NLGPNGGILTSLN--LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA 211 (324)
Q Consensus 134 ~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~ 211 (324)
.+-+.+....... .-+..+.+.+..+. ..++++|+|||+.... .... +....+|.+++|+......
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~---~~yD~VIIDtpp~~~~----~d~~-----~l~~~ad~vilV~~~~~~~ 250 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWAN---DHYDLVIVDTPPMLAV----SDAA-----VVGRSVGTSLLVARFGLNT 250 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH---HHCSEEEEECCCTTTC----THHH-----HHGGGCSEEEEEEETTTSC
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHHH---hCCCEEEEcCCCCchh----HHHH-----HHHHHCCEEEEEEcCCCCh
Confidence 1111111111000 01334444444443 4689999999986432 0111 1123468999998765432
Q ss_pred CchhHHHhHHHHHHHHhhcCCCeE-EEeeccccC
Q 020549 212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVA 244 (324)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 244 (324)
. .... ..+..+...+.+++ +|+|++|..
T Consensus 251 ~--~~~~---~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 251 A--KEVS---LSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp T--THHH---HHHHHHHHTTCCCCCEEEEECCCC
T ss_pred H--HHHH---HHHHHHHhCCCCeEEEEEeCCccC
Confidence 2 2222 22234445566544 789999864
No 311
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.77 E-value=0.0003 Score=59.03 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=71.5
Q ss_pred EEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549 72 IIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (324)
Q Consensus 72 v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (324)
|+++ +..|+||||+.-.|.......+ ++.++..|+.-.. . .++..-.+.. ..+..
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~---------~------~~~~~~~l~~--------~vi~~ 58 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA---------T------GWGKRGSLPF--------KVVDE 58 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH---------H------HHHHHSCCSS--------EEEEG
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH---------H------HHhcCCCCCc--------ceeCH
Confidence 5554 6899999999999988776667 7888777653210 0 1111100000 11111
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549 151 KFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 229 (324)
. .+......++++|+|||+. .... ....+ ..+|.+++++..... ........+..+..
T Consensus 59 ~------~l~~l~~~yD~viiD~p~~~~~~~--------~~~~l--~~aD~viiv~~~~~~-----~~~~~~~~~~~l~~ 117 (209)
T 3cwq_A 59 R------QAAKYAPKYQNIVIDTQARPEDED--------LEALA--DGCDLLVIPSTPDAL-----ALDALMLTIETLQK 117 (209)
T ss_dssp G------GHHHHGGGCSEEEEEEECCCSSSH--------HHHHH--HTSSEEEEEECSSHH-----HHHHHHHHHHHHHH
T ss_pred H------HHHHhhhcCCEEEEeCCCCcCcHH--------HHHHH--HHCCEEEEEecCCch-----hHHHHHHHHHHHHh
Confidence 1 1122245789999999985 3321 11111 236898888876321 11111222233333
Q ss_pred -cCCCeEEEeeccccCC
Q 020549 230 -TRLPLVLAFNKTDVAQ 245 (324)
Q Consensus 230 -~~~p~ilv~NK~Dl~~ 245 (324)
.+.++.+|+|++|...
T Consensus 118 ~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 118 LGNNRFRILLTIIPPYP 134 (209)
T ss_dssp TCSSSEEEEECSBCCTT
T ss_pred ccCCCEEEEEEecCCcc
Confidence 2677889999999764
No 312
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.77 E-value=9.5e-06 Score=72.47 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~ 96 (324)
..+..++|+|++|||||||+|+|.+.....
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 356789999999999999999999875543
No 313
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.75 E-value=3.6e-05 Score=69.58 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~ 104 (324)
.+..++|+|++|+|||||++.|++...+..+.+++.+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 3557999999999999999999999877767666644
No 314
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.75 E-value=0.00016 Score=61.96 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=32.7
Q ss_pred CCcEEEEEc-cCCCcHHHHHHHHHhcccCC-cceEEEeccCCc
Q 020549 68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPA 108 (324)
Q Consensus 68 ~~~~v~iiG-~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~ 108 (324)
++..|++++ ..|+||||+.-.|....... ++++.++..|+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 345566664 68999999999998887776 888999888865
No 315
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.74 E-value=0.00033 Score=61.86 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=82.5
Q ss_pred CCcEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHH-cCCC--------C
Q 020549 68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ-FNLG--------P 137 (324)
Q Consensus 68 ~~~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~--------~ 137 (324)
.+..|+|+| .+|+||||+.-.|.......+.++.++..|+.-...... +++.....+.+++.. ..+. +
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~--~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 168 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHEL--LGTNNVNGLSEILIGQGDITTAAKPTSIA 168 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHH--HTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHH--hCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence 345677776 589999999999987766667788888777643221110 000000111112110 0000 0
Q ss_pred CCccccc------c-c-ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC
Q 020549 138 NGGILTS------L-N-LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR 209 (324)
Q Consensus 138 ~~~~~~~------~-~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~ 209 (324)
+..++.. . + .-+..+.+.+..+. ..++++|+|||+.... ... ......+|.+|+|+....
T Consensus 169 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~---~~yD~VIIDtpp~~~~----~da-----~~l~~~aD~vllVv~~~~ 236 (286)
T 3la6_A 169 KFDLIPRGQVPPNPSELLMSERFAELVNWAS---KNYDLVLIDTPPILAV----TDA-----AIVGRHVGTTLMVARYAV 236 (286)
T ss_dssp TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH---HHCSEEEEECCCTTTC----THH-----HHHTTTCSEEEEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHhchHHHHHHHHHHH---hCCCEEEEcCCCCcch----HHH-----HHHHHHCCeEEEEEeCCC
Confidence 0000000 0 0 01234444444443 4679999999986432 001 112345799999998754
Q ss_pred CCCchhHHHhHHHHHHHHhhcCCC-eEEEeeccccCCh
Q 020549 210 SANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVAQH 246 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 246 (324)
.. .... ...+..+...+.+ +-+|+||+|....
T Consensus 237 ~~--~~~~---~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 237 NT--LKEV---ETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp SB--HHHH---HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred Cc--HHHH---HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 22 2222 2223445555555 4579999986543
No 316
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.70 E-value=4.6e-05 Score=66.53 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLD 106 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d 106 (324)
.++..++|+|++|||||||++.|++...+. .+.+.+.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 356789999999999999999999987654 5666665544
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=3.9e-05 Score=68.45 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~ 100 (324)
.+..++++|++|||||||+|.|.+...+..+.+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 356799999999999999999999876654433
No 318
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.69 E-value=4.2e-05 Score=68.23 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=24.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~ 98 (324)
.+..++++|++|||||||+|+|. ...+..+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G 193 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQ 193 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence 45689999999999999999999 6554433
No 319
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.68 E-value=6.9e-05 Score=70.23 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+..+|+|+|++++|||||+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4567999999999999999999986
No 320
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.66 E-value=0.00071 Score=58.73 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=31.4
Q ss_pred CcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549 69 PVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (324)
Q Consensus 69 ~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~ 109 (324)
+..|+|+ |..|+||||+.-.|.......++++.++..|+.-
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4456665 5789999999999987766667788888877654
No 321
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.65 E-value=2.4e-05 Score=71.25 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhccc-CCc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRN 97 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~-~~~ 97 (324)
.+..++|+|++|||||||+|.|++... ...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~ 244 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILT 244 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccccccc
Confidence 456899999999999999999999765 443
No 322
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.65 E-value=0.0003 Score=60.91 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 68 ~~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
+...|+++ +..|+||||+.-.|.......++++.++..|+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 44567777 578999999999998876666778888887764
No 323
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.63 E-value=0.00022 Score=63.13 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred cEEEEEc---cCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549 70 VIIIVVG---MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (324)
Q Consensus 70 ~~v~iiG---~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~ 109 (324)
..|+|++ ..|+||||+.-.|.......++++.++..|+.-
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3466665 999999999999987766667788888888753
No 324
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.61 E-value=0.00014 Score=61.42 Aligned_cols=28 Identities=39% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++..++|+|++|||||||++.|++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4677899999999999999999998543
No 325
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.61 E-value=0.00021 Score=70.84 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCC---CEEEEeCCC
Q 020549 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPG 175 (324)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~liDtpG 175 (324)
.+.+..+++... ..-.....+|.|++|++.++++....+ +++|+|.|-
T Consensus 524 ~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 524 LETLYDVGLGYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp HHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred HHHHHHcCCchh-hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 355666666432 112233469999999999999997665 599999884
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.61 E-value=6.9e-05 Score=68.36 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~ 96 (324)
.+..|+|+|++|||||||++.|++...+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 45589999999999999999999886654
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.61 E-value=2.9e-05 Score=62.43 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~ 100 (324)
..+..++|+|++|||||||++.|++.. +..+.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 467789999999999999999999987 554443
No 328
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.00012 Score=64.29 Aligned_cols=91 Identities=8% Similarity=0.014 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCCCchhHHHhHHHHH-HHHh----hcCCCeEEEeec-cccCChHhHHHHHHhHHHHHHHHhcCccchh
Q 020549 198 PTVVTYVVDTPRSANPMTFMSNMLYAC-SILY----KTRLPLVLAFNK-TDVAQHEFALEWMQDFEVFQAAISSDHSYTS 271 (324)
Q Consensus 198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~~~----~~~~p~ilv~NK-~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (324)
.|.+|||||+.+..... ...++..+ ..+. ..+.|++|..|| -|+...-...++.+.+.
T Consensus 211 tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~-------------- 274 (312)
T 3l2o_B 211 VDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH-------------- 274 (312)
T ss_dssp CSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred CCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC--------------
Confidence 48999999997654322 22222111 1121 257899999997 58765422222222221
Q ss_pred hHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549 272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (324)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~ 313 (324)
.- .......|.+|||++|+|+.+-++.|.+.+.
T Consensus 275 -------L~--~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 -------LN--LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp -------GG--GGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred -------Cc--cCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 10 1112356899999999999999999988763
No 329
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.58 E-value=0.00034 Score=60.86 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCCcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 67 ~~~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
+++..|+|+ |..|+||||+.-.|..... .++++.++..|+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 345566665 4799999999999988776 7888888888764
No 330
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.57 E-value=0.00071 Score=66.96 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=33.5
Q ss_pred HHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCC--EEEEeCCC
Q 020549 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPG 175 (324)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~liDtpG 175 (324)
++.+++.... .......+|.|++|++.++++....++ ++|+|.|-
T Consensus 186 l~~~gL~~~~-~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt 232 (670)
T 3ux8_A 186 LQNVGLDYLT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS 232 (670)
T ss_dssp HHHTTCTTCC-TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred HHHcCCchhh-hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence 5566664321 112334699999999999999998887 99999984
No 331
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=0.00035 Score=55.45 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~ 95 (324)
.+..++|+|++|+|||||++.+.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456999999999999999999987544
No 332
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.52 E-value=0.0017 Score=54.71 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=27.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
++..++|+|++|+|||||++.|++.....+..+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 566799999999999999999997655444444443
No 333
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.47 E-value=6.4e-05 Score=63.02 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..++..++|+|++|||||||++.|.+...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45677899999999999999999998753
No 334
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=7.6e-05 Score=61.15 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..++|+|++|||||||++.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999864
No 335
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.43 E-value=8e-05 Score=61.97 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.+..++|+|++|||||||++.|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46679999999999999999999874
No 336
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.42 E-value=0.0016 Score=56.20 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=29.7
Q ss_pred EEEE-EccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 71 IIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 71 ~v~i-iG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
.|+| -+..|+||||+.-.|.......+.++.++..|+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4555 4579999999999998776666778888887764
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.42 E-value=6.2e-05 Score=62.76 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..++|+|++|||||||++.|.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4569999999999999999999864
No 338
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.41 E-value=0.0024 Score=57.66 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
-.++-.++|.|+||+|||||+..++......+..+.++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34566799999999999999999887654444455443
No 339
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.37 E-value=9.1e-05 Score=62.13 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=25.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~ 95 (324)
.++.+|+|+|++|||||||++.|.+...+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999987654
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.37 E-value=9.8e-05 Score=61.85 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=24.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++..|+|+|++|||||||++.|.+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4667899999999999999999998643
No 341
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.36 E-value=0.00011 Score=60.52 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.++..|+|+|++|||||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999986
No 342
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.36 E-value=0.0018 Score=56.17 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~ 109 (324)
+|+|.|..|+||||+.-.|.......++++.++..|+.-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 467789999999999999988776677888888888754
No 343
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.35 E-value=0.00011 Score=62.45 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..+..++|+|++|||||||++.|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4677899999999999999999998765
No 344
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.35 E-value=9.1e-05 Score=62.74 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..++|+|++|||||||++.|.+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456779999999999999999999976
No 345
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.35 E-value=0.00061 Score=57.91 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=30.3
Q ss_pred cEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 70 VIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 70 ~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
..|+|+| ..|+||||+.-.|.......++++.++..|+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 3466654 68999999999998876666778888887764
No 346
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.32 E-value=9.8e-05 Score=60.79 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..++|+|++|||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999998754
No 347
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.31 E-value=0.001 Score=67.75 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=48.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccC-------CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-------RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG 139 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (324)
..+..++|+|++|+|||||++.+...... ......+.- +.. .-+.++..+
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~----~d~--i~~~ig~~d----------------- 727 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGI----VDG--IFTRMGAAD----------------- 727 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEEC----CSE--EEEEC---------------------
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhH----HHH--HHHhCChHH-----------------
Confidence 34678999999999999999987543111 111111100 000 000111111
Q ss_pred cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCc
Q 020549 140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (324)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 177 (324)
.+......|+.++.++...+.. ...+.++|+|.||-.
T Consensus 728 ~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~G 764 (918)
T 3thx_B 728 NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRG 764 (918)
T ss_dssp ------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTT
T ss_pred HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCC
Confidence 1111223477888888877776 568899999999843
No 348
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.27 E-value=0.0016 Score=66.51 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHH
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRL 89 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l 89 (324)
.+..++|+|++|+|||||++.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999998
No 349
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.26 E-value=0.00019 Score=58.59 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=29.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d 106 (324)
...++|+|++|+|||||+++|++.....+..+.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 46799999999999999999998755445555554443
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.25 E-value=0.00022 Score=63.68 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEe
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVM 103 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~ 103 (324)
.++..|+|+|++|||||||++.|.+... +..+.+.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 4678899999999999999999998755 455555553
No 351
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.25 E-value=0.0007 Score=56.68 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHh
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
.++..++|+|++|+|||||+..|+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999998
No 352
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.25 E-value=0.00017 Score=60.43 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++..|+|+|++|||||||++.|.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999998753
No 353
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.24 E-value=0.0011 Score=61.33 Aligned_cols=28 Identities=11% Similarity=-0.128 Sum_probs=25.3
Q ss_pred cChHHHHHHHHHHHHhCCC--CEEEEeCCC
Q 020549 148 FTTKFDEVISLIERRADHL--DYVLVDTPG 175 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~~~liDtpG 175 (324)
+|.|+++++.++......+ +++|+|.|-
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt 325 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD 325 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 6999999999999888888 999999884
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.23 E-value=0.00021 Score=57.96 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=31.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
...++|+|++|+|||||+.+|+......+..+.++..++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4579999999999999999999876666666777665543
No 355
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.23 E-value=0.00019 Score=59.74 Aligned_cols=27 Identities=15% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..|+|+|++|||||||+++|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 356679999999999999999999764
No 356
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.23 E-value=0.0011 Score=58.39 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=30.2
Q ss_pred cEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 70 ~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
..|+|+ +..|+||||+.-.|.......++++.++..|+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 356666 57999999999999887766677888877776
No 357
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.22 E-value=0.00079 Score=59.02 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..++|+|++|+|||||+..|++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999998753
No 358
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.21 E-value=0.083 Score=47.15 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=32.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
...+++.|..|+||||+.-.|.......++++.++..|+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 356777789999999999999877666678888888887
No 359
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.20 E-value=0.0002 Score=59.54 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=23.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..|+|+|++|||||||++.|.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998764
No 360
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.18 E-value=0.00022 Score=59.23 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..|+|+|++|||||||++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999875
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.17 E-value=0.00024 Score=59.22 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d 106 (324)
.++..|+|+|++|+|||||++.|.+.....++.+.+.+.|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 4567899999999999999999988755445555554444
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.16 E-value=0.0034 Score=60.24 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcce-EEEeccCCcccccccccccchhcHH-----HHHHHHHHcCCCCCCc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR-GYVMNLDPAVMTLPFAANIDIRDTI-----RYKEVMKQFNLGPNGG 140 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 140 (324)
.++..++|+|++|+|||||++.|++.....+.. .++...++.. .+.... ...++ ...++..-
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~---------~l~~~~~~~g~~~~~~-~~~g~~~~-- 346 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA---------QLLRNAYSWGMDFEEM-ERQNLLKI-- 346 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH---------HHHHHHHTTSCCHHHH-HHTTSEEE--
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH---------HHHHHHHHcCCCHHHH-HhCCCEEE--
Confidence 466789999999999999999999876654432 2333222100 000000 01111 11111100
Q ss_pred ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (324)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 175 (324)
.......+|.+..+++-.+.+...+++++++| |=
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~ 380 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SL 380 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH
T ss_pred EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch
Confidence 11122347999999998888888899999999 73
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.15 E-value=0.00018 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~ 98 (324)
.+..++|+|++|||||||++.|++. .+..+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 4567999999999999999999998 55433
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.08 E-value=0.00043 Score=62.13 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=30.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccC--CcceEEEeccC
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLD 106 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~--~~~~~~i~~~d 106 (324)
...+..|+|+|++|||||||++.|.+.... .++.+.++..|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 346788999999999999999999876542 33445554444
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.08 E-value=0.00036 Score=56.45 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..+..|+|+|++||||||+++.|.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 346789999999999999999998753
No 366
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.07 E-value=0.00043 Score=64.42 Aligned_cols=41 Identities=27% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
..+..++|+|++|||||||++.|++...+..+.+.+.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 35567999999999999999999998776666666655443
No 367
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00028 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..|+|+|++|||||||.+.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999998863
No 368
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.07 E-value=0.00031 Score=62.55 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..++..++|+|++|+|||||++.|.+..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3567789999999999999999999876
No 369
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.05 E-value=0.00029 Score=57.89 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
..++|+|++|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999986
No 370
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.05 E-value=0.0002 Score=61.02 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=18.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHH-hcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLV-CHT 93 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~-~~~ 93 (324)
..++..++|+|++|||||||++.|. +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456789999999999999999999 764
No 371
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.05 E-value=0.00042 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.4
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..++..++|+|++|||||||++.|++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999843
No 372
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.04 E-value=0.00034 Score=60.16 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..|+|+|++|||||||++.|.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999998853
No 373
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.04 E-value=0.0067 Score=53.20 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=32.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~ 109 (324)
..|+|.|..|+||||+.-.|.......++++.++..|+.-
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3577789999999999999988766667888888888753
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.03 E-value=0.00048 Score=62.96 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
.+..++|+|++|||||||++.|++...+..+.+++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 566799999999999999999999877766666664
No 375
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.01 E-value=0.0018 Score=58.81 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=24.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..+..+.|+|++|+|||||++.|++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999875
No 376
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.01 E-value=0.00032 Score=58.04 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.+++|+|++|+|||||++.|++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998754
No 377
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.99 E-value=0.00043 Score=57.50 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++..|+|+|++|||||||.+.|.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999988764
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.0004 Score=59.74 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHh
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
++.+|+|+|++|||||||++.|..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999993
No 379
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.99 E-value=0.00064 Score=61.72 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=32.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~ 105 (324)
..++.+++|+|++|+|||||++.|++...+..+.+.+.+.
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 3567889999999999999999999997766555555443
No 380
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.97 E-value=0.15 Score=45.97 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
....+++.|..|+||||+.-.|.......++++.++..|+.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34556777899999999999988776666788888888773
No 381
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.91 E-value=0.00046 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|++|||||||+++|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 56679999999999999999998764
No 382
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.89 E-value=0.012 Score=52.37 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=26.9
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i 102 (324)
-.++-.+.|.|+||+|||||+..++......+..+.+
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~ 101 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNL 101 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3456789999999999999999988654433333333
No 383
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.87 E-value=0.02 Score=51.92 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=32.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA 108 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~ 108 (324)
...+++-|..|+||||+.-.|.-... ..++++.++.-|+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34567779999999999999987776 67888888888874
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00062 Score=55.72 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=27.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~ 100 (324)
.++..|+|+|.+||||||+.+.|.......++.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4567899999999999999999988765444433
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.00034 Score=56.90 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~ 97 (324)
..++|+|++|+|||||++.|.+...+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 4699999999999999999999876653
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.85 E-value=0.00064 Score=62.39 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEec
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMN 104 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~ 104 (324)
..+..++|+|++|||||||++.|++...+. .+.+.+++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 456789999999999999999999986654 45554444
No 387
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.85 E-value=0.00073 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.3
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..++..|+|.|++|||||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356788999999999999999999886
No 388
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.83 E-value=0.14 Score=45.68 Aligned_cols=39 Identities=31% Similarity=0.327 Sum_probs=32.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
..+++-|..|+||||+.-.|.......++++.++..|+.
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 456778999999999999998877777888888887764
No 389
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.81 E-value=0.16 Score=45.59 Aligned_cols=40 Identities=30% Similarity=0.286 Sum_probs=32.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
...+++.|..|+||||+.-.|.......+.++.++..|+.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4567788999999999999998877777788888888753
No 390
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.80 E-value=0.00067 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|++||||||+.+.|....
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998763
No 391
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.80 E-value=0.001 Score=63.56 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=30.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~ 104 (324)
.+..++|+|++|||||||+++|++...+..+.+++.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 3456999999999999999999998877666666643
No 392
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.79 E-value=0.00077 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHh
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
+..|+|+|+|||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35699999999999999999987
No 393
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.79 E-value=0.00088 Score=55.80 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=24.2
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..++..|+|+|++|+|||||++.|.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999998853
No 394
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.78 E-value=0.014 Score=52.94 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i 102 (324)
++..+.|+|+||+|||||+..++......++.+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly 94 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF 94 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 45679999999999999999998875544444433
No 395
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.78 E-value=0.0011 Score=62.09 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=33.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~ 105 (324)
..++.+++|+|++|+|||||++.|++...+..+.+.+.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4567889999999999999999999998776666666554
No 396
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.76 E-value=0.093 Score=47.40 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=32.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA 108 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~ 108 (324)
...+++.|..|+||||+.-.|..... ..+.++.++..|+.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 35677889999999999999987766 66778888877753
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.75 E-value=0.00085 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+.+|+|+|++||||||+.+.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998753
No 398
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.00091 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|++||||||+.+.|....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999998764
No 399
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.72 E-value=0.0031 Score=63.08 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..++|+|++|+|||||++.+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5689999999999999999998754
No 400
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.72 E-value=0.0007 Score=64.08 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=23.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++.+|+++|.+|+||||+.++|.....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999987643
No 401
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.71 E-value=0.0007 Score=55.10 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
+..++|+|++|+|||||++++.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56699999999999999999998754
No 402
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.70 E-value=0.00063 Score=64.30 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=30.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d 106 (324)
..++|+|++|||||||++.|.+...+..+.+.+.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 6799999999999999999999877766655554443
No 403
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.69 E-value=0.0008 Score=55.45 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=20.1
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
|+|+||+|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998763
No 404
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.69 E-value=0.00086 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 405
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.68 E-value=0.0011 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..|+|+|++||||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4569999999999999999998763
No 406
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.68 E-value=0.089 Score=51.01 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~ 107 (324)
....+++.|.+|+||||+.-.|.......++++.++..|+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3456788899999999999998877666677888888776
No 407
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.67 E-value=0.001 Score=55.34 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 408
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.66 E-value=0.0031 Score=65.13 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..++|+|++|+|||||++.+ +..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 568999999999999999998 543
No 409
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.65 E-value=0.011 Score=54.03 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=32.0
Q ss_pred cCCCcEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549 66 KRKPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (324)
Q Consensus 66 ~~~~~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d 106 (324)
..++..|+|+| ..|+||||+.-.|.......+.++.+++.|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 34566788886 899999999998887765556778887776
No 410
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.65 E-value=0.0012 Score=54.11 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 411
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.64 E-value=0.0029 Score=57.66 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=30.6
Q ss_pred EEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549 71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (324)
Q Consensus 71 ~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~ 108 (324)
+|+|+ +..|+||||+.-.|.......+.++.++..|+.
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 35555 689999999999988776667788888888875
No 412
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.64 E-value=0.0011 Score=57.20 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHh
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
.++.+|+|+|++||||||+++.|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999984
No 413
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.61 E-value=0.036 Score=52.04 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=28.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccC-CcceEEEe
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVM 103 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~~~~~i~ 103 (324)
-.++-.++|.|+||+|||||+..++..... .+..+.++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 345678999999999999999999887543 23344443
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.61 E-value=0.0013 Score=58.03 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=29.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEe
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVM 103 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~ 103 (324)
..++..++|+|+||+|||||++.|++..... +..+.++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3467789999999999999999999887654 3244443
No 415
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.0011 Score=53.14 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=18.7
Q ss_pred cEEEEEccCCCcHHHHHHHH
Q 020549 70 VIIIVVGMAGSGKTTFMHRL 89 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l 89 (324)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 416
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.61 E-value=0.001 Score=54.20 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|++||||||+.+.|...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.60 E-value=0.0011 Score=54.99 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999988
No 418
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.59 E-value=0.0013 Score=58.20 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~ 95 (324)
.++.+|+|+|++|||||||++.|.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46788999999999999999999876543
No 419
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.59 E-value=0.066 Score=44.63 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=25.0
Q ss_pred EEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 71 IIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 71 ~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
.|+|+| .+|+||||+.-.|.......++++.++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 467777 589999999999887766566666663
No 420
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0012 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..|+|.|++||||||+.+.|....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
No 421
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.58 E-value=0.01 Score=59.89 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCC---CCEEEEeCCC
Q 020549 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG 175 (324)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~liDtpG 175 (324)
..++++.+++.... .-.....+|.|++|++.++.+.... .+++|+|.|-
T Consensus 710 ~~~~L~~~gL~~~~-l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 761 (842)
T 2vf7_A 710 ALDTLREVGLGYLR-LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT 761 (842)
T ss_dssp HHHHHHHTTCTTSB-TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred HHHHHHHcCCCccc-ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 45678888887521 1122346999999999999999875 6999999884
No 422
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.57 E-value=0.0011 Score=60.68 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~ 96 (324)
+.+++|+|++|+|||||++.|.+...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999976543
No 423
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.55 E-value=0.025 Score=52.92 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=27.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
.++-.+.|.|+||+|||||+..++......+..+.++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 4566799999999999999988877654334445443
No 424
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.54 E-value=0.0016 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999875
No 425
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.53 E-value=0.02 Score=58.30 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHcCCCC-CCcccccccccChHHHHHHHHHHHHhCC---CCEEEEeCCC
Q 020549 127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG 175 (324)
Q Consensus 127 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~liDtpG 175 (324)
.++++.++|.. ..+ .....+|.|++|++.++.+.... ++++|+|.|-
T Consensus 826 ~~~L~~~gL~~~~l~--~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 876 (972)
T 2r6f_A 826 LETLYDVGLGYMKLG--QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876 (972)
T ss_dssp HHHHHHTTCSSSBTT--CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred HHHHHHcCCCccccc--CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 46788888865 222 22335999999999999999865 4899999884
No 426
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.53 E-value=0.0016 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|.+||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998764
No 427
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.52 E-value=0.011 Score=59.56 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..+..++|+|++|+|||||++.+.+.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34568999999999999999998875
No 428
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.51 E-value=0.026 Score=57.44 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCC---CEEEEeCCC
Q 020549 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPG 175 (324)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~liDtpG 175 (324)
..++++.++++... .-.....+|.|++|++.++.+..... +++|+|.|-
T Consensus 785 ~~~~L~~vGL~~~~-lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 785 TLQVLHDVGLGYVK-LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp HHHHHHHTTGGGSB-TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred HHHHHHHcCCchhh-ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 34567777775321 11223359999999999999997654 699999884
No 429
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.49 E-value=0.0017 Score=54.18 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..|+|+|.+||||||+.+.|....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998764
No 430
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.0017 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|.+||||||+.+.|.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998864
No 431
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.49 E-value=0.0018 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.5
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
...+..|+|+|.+||||||+.+.|...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999999999999999999875
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.48 E-value=0.0019 Score=52.66 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.+||||||+.+.|...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 433
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.0016 Score=54.01 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~ 95 (324)
+..|+|.|.+||||||+.+.|......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 567999999999999999999876443
No 434
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.48 E-value=0.0017 Score=54.68 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++.+|+|+|.+||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998753
No 435
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.47 E-value=0.0019 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|.+||||||+.+.|....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998754
No 436
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.46 E-value=0.087 Score=49.20 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++-.+.|.|+||+|||||+..++....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999887644
No 437
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.45 E-value=0.023 Score=58.01 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHcCCCC-CCcccccccccChHHHHHHHHHHHHhCC---CCEEEEeCCC
Q 020549 127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG 175 (324)
Q Consensus 127 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~liDtpG 175 (324)
.++++.++|.. ..+ .....||.|++|++.++.+.... ++++|+|.|-
T Consensus 844 ~~~L~~lgL~~~~l~--~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 894 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLG--QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT 894 (993)
T ss_dssp HHHHHHTTGGGSBTT--CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTT
T ss_pred HHHHHHcCCCccccc--CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 45677787764 222 22345999999999999999865 4899999884
No 438
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+..|+|+|.+||||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999765
No 439
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.44 E-value=0.0019 Score=53.01 Aligned_cols=25 Identities=48% Similarity=0.591 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 440
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.43 E-value=0.0021 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhccc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..|+|+|.+||||||+.+.|.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999988654
No 441
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.43 E-value=0.0018 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4556999999999999999999865
No 442
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.43 E-value=0.023 Score=52.67 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=23.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
...+..|+|+|.+||||||+.++|....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999998753
No 443
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.40 E-value=0.0033 Score=53.50 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~ 100 (324)
.++..|+|.|++||||||+++.|...... +..+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 36788999999999999999999987655 4433
No 444
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.38 E-value=0.0011 Score=55.39 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=24.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCcceEE
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY 101 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~ 101 (324)
.|+|.|.+||||||+++.|.......+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5899999999999999999877544443333
No 445
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.38 E-value=0.002 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+..|+++|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 446
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.36 E-value=0.0019 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.|+|+|.+||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998753
No 447
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.36 E-value=0.0023 Score=52.81 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999875
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.35 E-value=0.0024 Score=53.86 Aligned_cols=28 Identities=39% Similarity=0.463 Sum_probs=23.6
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..++..|.|+|+|||||+|....|+...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999999998763
No 449
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.35 E-value=0.0021 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++.+|+|+|++||||||+.+.|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999865
No 450
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.34 E-value=0.0028 Score=52.41 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.++..|+|+|.+||||||+.+.|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999999865
No 451
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.30 E-value=0.0022 Score=54.20 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|++||||||+.+.|...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 452
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.0022 Score=56.55 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.++..|+|+|+|||||||+.++|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998653
No 453
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.27 E-value=0.0021 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++..|+|+|++||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998753
No 454
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.24 E-value=0.0026 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhccc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
..+|+|++|+|||||+.+|.....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999987543
No 455
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.23 E-value=0.0026 Score=52.26 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+..|+|+|.+||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 456
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=96.22 E-value=0.0067 Score=56.03 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCcEEEEE-ccCCCcHHHHHHHHHhccc------CCcceEEEeccCCc
Q 020549 67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA 108 (324)
Q Consensus 67 ~~~~~v~ii-G~~gaGKSTLl~~l~~~~~------~~~~~~~i~~~d~~ 108 (324)
.++..|+|+ |..|+||||+.-.|..... ..++++.+++.|+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 345567777 6899999999988877654 35678888888874
No 457
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.21 E-value=0.0024 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+|+|+|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997653
No 458
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.21 E-value=0.003 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHh
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
++..|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 459
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.003 Score=54.44 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.++..|+|.|.+||||||+.+.|...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999774
No 460
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.18 E-value=0.0024 Score=55.90 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEccCCCcHHHHHHHHHhcccC
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQS 95 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~~ 95 (324)
++|+|+||+|||||++++.+....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999987543
No 461
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.18 E-value=0.0032 Score=52.61 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
.++..|+|+|.+|+||||+.+.|.+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999987654
No 462
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.16 E-value=0.0027 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+|+|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 463
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.15 E-value=0.0026 Score=54.91 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
...+..|+++|+|||||||+.+.|....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999998764
No 464
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.0021 Score=52.10 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=17.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999765
No 465
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.13 E-value=0.003 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.++..++|+|++|+|||||+..|++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999985
No 466
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.12 E-value=0.023 Score=48.04 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=28.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~ 103 (324)
.++..+.+.|++|+||||++-.++......+..+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3567799999999999999988877765555555554
No 467
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.12 E-value=0.0033 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|+|.|||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999875
No 468
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.12 E-value=0.019 Score=52.00 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i 102 (324)
++..+.|.|+||+|||||+..++......+..+.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 45679999999999999999988665444444444
No 469
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0027 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
.+|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999875
No 470
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0029 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+..|+|+|++||||||+.+.|.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999998753
No 471
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.10 E-value=0.00044 Score=58.90 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i 102 (324)
..++|+|++|||||||+++|++...+..+.+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 347899999999999999999987776554433
No 472
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.08 E-value=0.0029 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.|+|+|++||||||+.+.|....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 473
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.06 E-value=0.0033 Score=52.83 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
++.+|+|+|.+||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998753
No 474
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.02 E-value=0.0032 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEccCCCcHHHHHHHHHhccc
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
++|+|++|+|||||++++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998643
No 475
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.02 E-value=0.0037 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.|+|.|.+||||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 476
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.01 E-value=0.004 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..+..++|+|++|+|||||++.|.+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45668999999999999999999975
No 477
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.01 E-value=0.13 Score=43.43 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=24.9
Q ss_pred cEEEEEcc-CCCcHHHHHHHHHhcccCCcceEEE
Q 020549 70 VIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYV 102 (324)
Q Consensus 70 ~~v~iiG~-~gaGKSTLl~~l~~~~~~~~~~~~i 102 (324)
..+.|.|. +|+|||++.-.|+......+.++..
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~ 38 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC 38 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence 45788886 9999999998888776655555544
No 478
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.99 E-value=0.0042 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+...+|+|++|+|||||+.+|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 479
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.98 E-value=0.024 Score=52.10 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCCcEEEEE-ccCCCcHHHHHHHHHhccc------CCcceEEEeccCCc
Q 020549 67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA 108 (324)
Q Consensus 67 ~~~~~v~ii-G~~gaGKSTLl~~l~~~~~------~~~~~~~i~~~d~~ 108 (324)
..+.+|+|+ |..|+||||+.-.|..... ..++++.++..|+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 345567777 6899999999998877654 24678888888863
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.98 E-value=0.004 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|.|++|+||||+.+.|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.96 E-value=0.0039 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+|+|+|+|||||+|....|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998763
No 482
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.004 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999875
No 483
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.96 E-value=0.0041 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.|+|.|.+||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.95 E-value=0.0046 Score=59.32 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHH--HhcccCCcceEEEeccC
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRL--VCHTQSRNIRGYVMNLD 106 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l--~~~~~~~~~~~~i~~~d 106 (324)
.++..++|+|++|||||||++.| .+...+..+.+++.+.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 46778999999999999999994 45554344556554443
No 485
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.92 E-value=0.004 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 020549 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 70 ~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..++++|+||+|||||++.+++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999999875
No 486
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.91 E-value=0.004 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
.|+|+|++|||||||.+.|....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999998753
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.90 E-value=0.0037 Score=60.25 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=27.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~ 97 (324)
..++..|+|+|++|||||||++.|.+...+.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 34678899999999999999999998866543
No 488
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.89 E-value=0.0046 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 489
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.89 E-value=0.005 Score=52.30 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
..+..|+|+|.+||||||+.+.|....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999998763
No 490
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.005 Score=52.27 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=25.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i 102 (324)
.++..++|+|+||+|||||+..++......+..+.+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~ 56 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIY 56 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 356679999999999999988877654333333333
No 491
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.82 E-value=0.0048 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+|+|+|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 492
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.81 E-value=0.0056 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHh
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVC 91 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~ 91 (324)
.++..|+|+|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
No 493
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.79 E-value=0.0045 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEccCCCcHHHHHHHHHhccc
Q 020549 72 IIVVGMAGSGKTTFMHRLVCHTQ 94 (324)
Q Consensus 72 v~iiG~~gaGKSTLl~~l~~~~~ 94 (324)
++|+|++|+|||||++++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998653
No 494
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.79 E-value=0.17 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..+..+.|.|++|+|||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999875
No 495
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=95.77 E-value=0.55 Score=39.96 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC
Q 020549 154 EVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL 232 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (324)
+............+++++|.||- ..+.........+.+.+ ..-+|+|++...+. +...+..+..+...++
T Consensus 120 ~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l----~~pVILV~~~~lg~-----i~~~~lt~~~l~~~g~ 190 (242)
T 3qxc_A 120 NLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL----KAKMLLISHDNLGL-----INDCLLNDFLLKSHQL 190 (242)
T ss_dssp HHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHH----TCEEEEEECCSTTH-----HHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHc----CCCEEEEEcCCCcH-----HHHHHHHHHHHHhCCC
Confidence 33444444556889999999863 22211111222233322 34688889886652 1122333445556666
Q ss_pred CeEEEeeccccCC
Q 020549 233 PLVLAFNKTDVAQ 245 (324)
Q Consensus 233 p~ilv~NK~Dl~~ 245 (324)
+.=+|+|+++-..
T Consensus 191 ~~GvIlN~v~~~~ 203 (242)
T 3qxc_A 191 DYKIAINLKGNNT 203 (242)
T ss_dssp CEEEEECCCTTCC
T ss_pred CEEEEEeCCCCcc
Confidence 6778999998543
No 496
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.75 E-value=0.0064 Score=51.71 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
..++.+|+|+|++|+||||+.+.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999874
No 497
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.70 E-value=0.17 Score=47.92 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEE
Q 020549 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYV 102 (324)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i 102 (324)
.++..+.|.|+||+|||||+..++...... +..+.+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~ 276 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGL 276 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEE
Confidence 456679999999999999999888765443 333433
No 498
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.70 E-value=0.0059 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 020549 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 71 ~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+|+|+|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998653
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.69 E-value=0.0083 Score=56.16 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (324)
Q Consensus 69 ~~~v~iiG~~gaGKSTLl~~l~~~~ 93 (324)
+.-+.|.|++|+|||||++++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998764
No 500
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.68 E-value=0.0033 Score=55.56 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=19.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549 68 KPVIIIVVGMAGSGKTTFMHRLVCH 92 (324)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLl~~l~~~ 92 (324)
++..|+|.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
Done!