Query 020551
Match_columns 324
No_of_seqs 213 out of 1377
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.9E-38 4.2E-43 294.0 14.6 203 120-322 4-206 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.2E-37 4.9E-42 294.3 20.4 230 89-322 2-232 (308)
3 TIGR01476 chlor_syn_BchG bacte 100.0 8.1E-34 1.8E-38 267.0 17.8 209 101-321 1-210 (283)
4 PLN00012 chlorophyll synthetas 100.0 1.6E-32 3.4E-37 266.7 23.9 213 94-321 79-301 (375)
5 PRK07566 bacteriochlorophyll/c 100.0 2E-32 4.4E-37 261.2 21.1 215 95-321 22-238 (314)
6 PRK12392 bacteriochlorophyll c 100.0 5.3E-32 1.2E-36 259.4 22.3 215 95-321 7-229 (331)
7 TIGR02056 ChlG chlorophyll syn 100.0 9.4E-32 2E-36 255.7 20.9 213 95-322 11-233 (306)
8 PRK09573 (S)-2,3-di-O-geranylg 100.0 3.5E-32 7.6E-37 255.5 16.9 202 99-321 2-203 (279)
9 PRK12884 ubiA prenyltransferas 100.0 5.5E-32 1.2E-36 253.9 18.0 203 98-321 2-204 (279)
10 PRK12882 ubiA prenyltransferas 100.0 4.9E-32 1.1E-36 254.1 16.2 204 99-321 3-206 (276)
11 PRK05951 ubiA prenyltransferas 100.0 1.1E-30 2.5E-35 247.3 22.3 207 99-319 3-218 (296)
12 PRK13387 1,4-dihydroxy-2-napht 100.0 6.3E-31 1.4E-35 251.0 20.5 213 100-320 3-237 (317)
13 PRK12883 ubiA prenyltransferas 100.0 5.2E-31 1.1E-35 247.3 17.4 202 99-321 2-203 (277)
14 PRK06080 1,4-dihydroxy-2-napht 100.0 2.2E-30 4.8E-35 244.7 21.3 208 99-321 2-217 (293)
15 PRK12874 ubiA prenyltransferas 100.0 1.8E-30 3.9E-35 245.3 20.5 209 95-321 3-216 (291)
16 TIGR01475 ubiA_other putative 100.0 5.8E-31 1.3E-35 247.6 17.1 204 100-321 2-207 (282)
17 PRK13106 ubiA prenyltransferas 100.0 1.1E-30 2.3E-35 247.4 17.8 209 95-321 10-225 (300)
18 PRK13595 ubiA prenyltransferas 100.0 2.4E-30 5.3E-35 242.5 19.2 205 97-322 9-219 (292)
19 PRK12895 ubiA prenyltransferas 100.0 2.5E-30 5.5E-35 243.2 17.4 205 99-321 2-208 (286)
20 PRK12847 ubiA 4-hydroxybenzoat 100.0 6.8E-30 1.5E-34 240.7 20.1 206 97-321 4-214 (285)
21 PRK12886 ubiA prenyltransferas 100.0 7.2E-30 1.6E-34 241.2 20.2 206 96-321 4-211 (291)
22 PRK12888 ubiA prenyltransferas 100.0 1.7E-29 3.7E-34 237.8 19.3 203 100-320 2-207 (284)
23 PRK12870 ubiA 4-hydroxybenzoat 100.0 7.5E-30 1.6E-34 241.0 16.4 205 97-321 6-215 (290)
24 PRK07419 1,4-dihydroxy-2-napht 100.0 4.7E-29 1E-33 236.6 20.8 209 97-321 9-223 (304)
25 PRK12878 ubiA 4-hydroxybenzoat 100.0 4.1E-29 8.9E-34 238.3 20.5 209 95-321 25-241 (314)
26 COG0382 UbiA 4-hydroxybenzoate 100.0 4.4E-29 9.5E-34 235.6 19.4 205 98-322 11-217 (289)
27 PRK12848 ubiA 4-hydroxybenzoat 100.0 4.3E-29 9.3E-34 235.0 18.7 204 98-321 3-211 (282)
28 PLN02922 prenyltransferase 100.0 8.5E-29 1.8E-33 236.0 20.8 214 98-321 13-237 (315)
29 PRK12869 ubiA protoheme IX far 100.0 7E-29 1.5E-33 233.2 19.4 204 99-320 1-207 (279)
30 PRK04375 protoheme IX farnesyl 100.0 1.2E-28 2.6E-33 233.5 20.1 206 97-321 7-216 (296)
31 TIGR01474 ubiA_proteo 4-hydrox 100.0 1.7E-28 3.7E-33 230.9 19.7 202 101-320 2-208 (281)
32 TIGR00751 menA 1,4-dihydroxy-2 100.0 2.4E-28 5.1E-33 230.0 19.5 199 108-320 1-212 (284)
33 PRK13362 protoheme IX farnesyl 100.0 1.2E-27 2.7E-32 227.3 21.4 206 97-320 10-218 (306)
34 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.6E-27 3.5E-32 224.4 21.1 202 103-320 2-209 (285)
35 TIGR01473 cyoE_ctaB protoheme 100.0 8.9E-28 1.9E-32 225.8 18.8 202 101-320 1-206 (280)
36 PLN02809 4-hydroxybenzoate non 100.0 1.1E-27 2.3E-32 226.1 19.2 207 98-321 4-215 (289)
37 COG1575 MenA 1,4-dihydroxy-2-n 100.0 4.9E-27 1.1E-31 219.5 20.6 209 98-320 6-224 (303)
38 PRK12876 ubiA prenyltransferas 100.0 2.4E-27 5.1E-32 223.7 18.7 207 99-320 3-220 (300)
39 PRK13105 ubiA prenyltransferas 99.9 1.3E-26 2.8E-31 217.6 18.5 204 100-322 1-210 (282)
40 PRK12873 ubiA prenyltransferas 99.9 3.4E-26 7.4E-31 215.7 18.7 204 98-319 5-217 (294)
41 PRK12871 ubiA prenyltransferas 99.9 1.1E-25 2.4E-30 213.1 19.7 203 98-320 3-223 (297)
42 PRK12872 ubiA prenyltransferas 99.9 9.2E-26 2E-30 212.2 14.7 208 98-322 2-211 (285)
43 PRK12875 ubiA prenyltransferas 99.9 6.9E-25 1.5E-29 206.2 18.7 203 97-321 5-214 (282)
44 PF01040 UbiA: UbiA prenyltran 99.9 1.2E-25 2.6E-30 206.4 13.2 189 114-319 3-193 (257)
45 PRK13591 ubiA prenyltransferas 99.9 3E-24 6.5E-29 202.4 18.4 161 146-322 65-229 (307)
46 PRK13592 ubiA prenyltransferas 99.9 5.4E-24 1.2E-28 199.2 13.9 170 139-322 46-223 (299)
47 COG0109 CyoE Polyprenyltransfe 99.9 2.6E-22 5.6E-27 187.4 11.5 206 96-319 14-222 (304)
48 PLN02776 prenyltransferase 99.9 2E-21 4.4E-26 186.1 17.9 188 106-313 1-192 (341)
49 PRK12324 phosphoribose diphosp 99.9 2.7E-20 5.9E-25 175.9 19.1 149 97-255 8-158 (295)
50 PRK08238 hypothetical protein; 99.8 9E-20 2E-24 182.9 18.6 190 95-305 186-377 (479)
51 KOG1381 Para-hydroxybenzoate-p 99.8 8E-20 1.7E-24 166.7 6.8 206 98-322 62-274 (353)
52 KOG1380 Heme A farnesyltransfe 99.3 4.2E-13 9.1E-18 125.6 3.7 191 98-311 92-288 (409)
53 KOG4581 Predicted membrane pro 99.3 2.8E-13 6.1E-18 121.6 0.2 212 95-318 56-275 (359)
54 PRK13591 ubiA prenyltransferas 95.3 0.55 1.2E-05 45.1 13.9 66 157-225 197-271 (307)
55 PRK07419 1,4-dihydroxy-2-napht 92.0 2.2 4.8E-05 40.9 11.5 37 150-189 185-222 (304)
56 COG1575 MenA 1,4-dihydroxy-2-n 91.6 2.3 5E-05 40.7 11.1 45 143-189 180-224 (303)
57 PRK13387 1,4-dihydroxy-2-napht 91.1 1.3 2.9E-05 42.6 9.0 47 145-194 195-242 (317)
58 PRK12872 ubiA prenyltransferas 90.6 2.2 4.8E-05 39.9 10.0 34 147-180 169-203 (285)
59 PLN02922 prenyltransferase 89.6 2 4.3E-05 41.4 8.8 42 148-191 197-238 (315)
60 TIGR01474 ubiA_proteo 4-hydrox 89.2 4.9 0.00011 37.8 11.1 36 145-180 166-202 (281)
61 PRK12875 ubiA prenyltransferas 89.1 16 0.00034 34.6 14.4 51 146-199 172-223 (282)
62 TIGR02235 menA_cyano-plnt 1,4- 89.0 5.8 0.00013 37.6 11.4 44 149-195 171-215 (285)
63 PLN00012 chlorophyll synthetas 88.6 6.5 0.00014 38.8 11.8 33 148-180 261-294 (375)
64 PRK06080 1,4-dihydroxy-2-napht 87.6 8.2 0.00018 36.3 11.5 44 147-193 176-220 (293)
65 PRK13105 ubiA prenyltransferas 87.6 3.6 7.7E-05 39.0 9.0 57 147-205 168-224 (282)
66 PRK12847 ubiA 4-hydroxybenzoat 87.4 7.4 0.00016 36.6 11.1 36 145-180 171-207 (285)
67 TIGR01475 ubiA_other putative 87.0 6.7 0.00015 36.8 10.5 36 145-180 164-200 (282)
68 TIGR00751 menA 1,4-dihydroxy-2 86.1 10 0.00022 35.9 11.2 43 149-193 174-216 (284)
69 PRK12887 ubiA tocopherol phyty 84.7 6.9 0.00015 37.5 9.4 26 147-172 190-215 (308)
70 PRK12888 ubiA prenyltransferas 84.4 17 0.00037 34.4 11.8 36 145-180 165-201 (284)
71 TIGR02056 ChlG chlorophyll syn 84.1 5.6 0.00012 38.0 8.6 31 149-179 193-224 (306)
72 PRK07566 bacteriochlorophyll/c 83.9 5.4 0.00012 38.2 8.4 30 151-180 201-231 (314)
73 PRK12871 ubiA prenyltransferas 83.0 16 0.00035 34.8 11.2 35 146-180 182-217 (297)
74 PRK12848 ubiA 4-hydroxybenzoat 82.9 20 0.00043 33.7 11.7 37 144-180 167-204 (282)
75 PRK12392 bacteriochlorophyll c 82.6 4.6 0.0001 39.1 7.4 35 146-180 187-222 (331)
76 TIGR01476 chlor_syn_BchG bacte 82.3 7.1 0.00015 36.6 8.4 31 150-180 172-203 (283)
77 PRK12884 ubiA prenyltransferas 82.3 6.7 0.00015 36.6 8.2 34 147-180 163-197 (279)
78 PRK12882 ubiA prenyltransferas 81.3 13 0.00028 34.7 9.7 34 147-180 165-199 (276)
79 PRK12886 ubiA prenyltransferas 81.0 6.7 0.00014 37.2 7.7 36 145-180 168-204 (291)
80 PRK12870 ubiA 4-hydroxybenzoat 80.9 20 0.00043 34.0 10.9 37 145-181 172-209 (290)
81 PRK12874 ubiA prenyltransferas 80.4 22 0.00048 33.7 11.0 36 145-180 173-209 (291)
82 PRK13106 ubiA prenyltransferas 79.8 7.3 0.00016 37.2 7.5 35 145-179 183-218 (300)
83 PRK09573 (S)-2,3-di-O-geranylg 79.4 14 0.00031 34.6 9.3 35 146-180 161-196 (279)
84 PRK12883 ubiA prenyltransferas 75.7 11 0.00024 35.2 7.4 32 149-180 164-196 (277)
85 PRK12878 ubiA 4-hydroxybenzoat 74.8 55 0.0012 31.4 12.1 35 146-180 199-234 (314)
86 PRK05951 ubiA prenyltransferas 74.1 33 0.00072 32.5 10.3 34 150-186 182-216 (296)
87 PRK13592 ubiA prenyltransferas 67.4 16 0.00035 35.0 6.4 21 283-303 57-77 (299)
88 PRK12895 ubiA prenyltransferas 65.8 90 0.002 29.6 11.2 36 144-179 164-200 (286)
89 PF01040 UbiA: UbiA prenyltran 62.1 81 0.0018 28.3 10.0 23 149-171 156-178 (257)
90 PRK12869 ubiA protoheme IX far 59.2 40 0.00087 31.6 7.6 31 149-179 169-200 (279)
91 PRK11383 hypothetical protein; 57.2 1.2E+02 0.0027 25.8 11.2 80 214-300 49-131 (145)
92 PRK12873 ubiA prenyltransferas 55.7 1.9E+02 0.0041 27.6 12.4 35 146-180 177-212 (294)
93 COG0382 UbiA 4-hydroxybenzoate 55.3 1.2E+02 0.0026 28.5 10.1 30 143-172 171-200 (289)
94 PRK04214 rbn ribonuclease BN/u 54.5 1E+02 0.0022 30.7 9.9 19 148-166 114-132 (412)
95 TIGR02748 GerC3_HepT heptapren 53.4 1.8E+02 0.0038 27.9 11.1 49 147-198 71-119 (319)
96 PF11990 DUF3487: Protein of u 49.3 72 0.0016 26.4 6.6 40 166-207 8-51 (121)
97 PRK12876 ubiA prenyltransferas 49.3 2.5E+02 0.0053 26.9 12.4 33 148-180 181-214 (300)
98 PRK12324 phosphoribose diphosp 48.5 17 0.00038 34.6 3.2 20 284-303 58-77 (295)
99 PLN02878 homogentisate phytylt 47.8 65 0.0014 30.6 6.8 39 150-191 167-206 (280)
100 PF12270 Cyt_c_ox_IV: Cytochro 47.2 1.8E+02 0.0038 24.7 10.6 48 178-225 81-130 (137)
101 TIGR01473 cyoE_ctaB protoheme 46.3 1E+02 0.0022 28.8 8.0 22 159-180 178-200 (280)
102 PRK04375 protoheme IX farnesyl 43.7 2.9E+02 0.0062 26.1 11.6 35 146-180 174-209 (296)
103 COG1295 Rbn Ribonuclease BN fa 42.0 3.1E+02 0.0067 26.0 10.9 30 217-247 202-233 (303)
104 TIGR03750 conj_TIGR03750 conju 41.6 1.2E+02 0.0026 24.8 6.6 33 166-200 5-37 (111)
105 PLN02809 4-hydroxybenzoate non 41.2 3.2E+02 0.0068 25.9 12.0 32 149-180 176-208 (289)
106 PF00348 polyprenyl_synt: Poly 40.8 1.6E+02 0.0036 27.0 8.5 53 145-200 39-91 (260)
107 PRK13595 ubiA prenyltransferas 39.8 79 0.0017 30.2 6.2 22 285-306 60-81 (292)
108 PF03369 Herpes_UL3: Herpesvir 36.7 59 0.0013 27.0 4.1 23 32-54 31-54 (134)
109 cd00867 Trans_IPPS Trans-Isopr 34.7 13 0.00029 33.3 0.0 30 284-313 158-197 (236)
110 PF04341 DUF485: Protein of un 30.6 2.5E+02 0.0055 21.6 9.2 39 132-170 51-89 (91)
111 PRK10299 PhoPQ regulatory prot 29.5 67 0.0015 22.1 2.8 19 150-168 16-34 (47)
112 PLN02776 prenyltransferase 28.9 3.2E+02 0.007 26.7 8.5 30 171-200 184-215 (341)
113 PLN02890 geranyl diphosphate s 27.3 6.5E+02 0.014 25.3 10.9 49 146-197 168-216 (422)
114 TIGR02749 prenyl_cyano solanes 26.3 5.8E+02 0.013 24.4 11.3 49 146-197 74-122 (322)
115 PRK08238 hypothetical protein; 26.0 64 0.0014 33.0 3.3 22 283-304 237-258 (479)
116 COG4147 DhlC Predicted symport 25.9 1.4E+02 0.003 30.7 5.5 29 141-169 355-383 (529)
117 KOG4016 Synaptic vesicle prote 24.3 4.9E+02 0.011 23.8 8.1 28 231-258 99-126 (233)
118 PF04284 DUF441: Protein of un 24.3 4.2E+02 0.0092 22.5 7.3 15 174-188 59-73 (140)
119 PRK13362 protoheme IX farnesyl 23.2 4.4E+02 0.0096 25.1 8.3 25 154-180 188-212 (306)
120 PRK10581 geranyltranstransfera 20.9 27 0.00058 33.3 -0.6 35 284-318 215-260 (299)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.9e-38 Score=294.02 Aligned_cols=203 Identities=43% Similarity=0.778 Sum_probs=178.4
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHH
Q 020551 120 TSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (324)
Q Consensus 120 ~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~ 199 (324)
+..+++|.+..+++++.++.+.+.+++++++++.+..++|||+|+|+||+|||+||+|||++|+++++.+++.+.++|+.
T Consensus 4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~ 83 (280)
T PLN02878 4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG 83 (280)
T ss_pred hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456676666666666778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHH
Q 020551 200 LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279 (324)
Q Consensus 200 la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~ 279 (324)
+++..|+++++++++.++++++.||..+||+|+||.+++...+...+.+....+|+|.++++.++|++..++++.++..+
T Consensus 84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~ 163 (280)
T PLN02878 84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA 163 (280)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence 99999988777776778789999998789999999999988888777787788999999888888876655656666666
Q ss_pred HHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 280 ~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
+++++..+++++||++|+|||++.|++|+|+++|++++.+++.
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~ 206 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHH
Confidence 7778889999999999999999999999999999999998764
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.2e-37 Score=294.30 Aligned_cols=230 Identities=31% Similarity=0.438 Sum_probs=183.0
Q ss_pred chhhhHHHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 020551 89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID 167 (324)
Q Consensus 89 ~~~~~~~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D 167 (324)
|++.++...+.+++|++++|||+.+.+.++++.++++|...... .....+..++.++++...++.+.+.+|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34567777889999999999999999999999888876432221 12212333444455555555556669999999999
Q ss_pred hccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHH
Q 020551 168 KINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247 (324)
Q Consensus 168 ~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~ 247 (324)
++|||+||+++|++|+++++.+.+++.++|+++++..|++.+.+ .+++.+++++||. ||+|+||+|++++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~-~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLIT-VGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999766544 3578889999999 99999999998999988888
Q ss_pred HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 248 g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
|..+.+|.+.+.... .+....++...++..+++++++.++++.||++|+|||++.|+||+|+++|++++.+++.
T Consensus 159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~ 232 (308)
T PRK12887 159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC 232 (308)
T ss_pred HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHH
Confidence 887778876543211 23233445555666667778999999999999999999999999999999999987653
No 3
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=8.1e-34 Score=267.03 Aligned_cols=209 Identities=19% Similarity=0.170 Sum_probs=164.4
Q ss_pred HHHHHhHccchHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccC
Q 020551 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (324)
Q Consensus 101 ~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG 179 (324)
|+|++++||+++...+++++.|.+++....++ +++.. .++.+++++.++++++|.+|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46889999999999999999999887322222 33321 2344667889999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHHh
Q 020551 180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHS 259 (324)
Q Consensus 180 ~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~ 259 (324)
++|+++++.+.+++.++++++++.++.+...+..+++++++++||. ||+++||+++++++.+++.++.....+.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~--- 153 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH--- 153 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999888888766523323457778999999 99999999989999988765532111111
Q ss_pred hhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 260 QTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 260 ~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
...+. .++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++++++
T Consensus 154 --~~~~~---~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~ 210 (283)
T TIGR01476 154 --AIFAP---LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVA 210 (283)
T ss_pred --HHhCC---CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHH
Confidence 11221 2334444445566788889999999999999999999999999999998764
No 4
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=1.6e-32 Score=266.66 Aligned_cols=213 Identities=23% Similarity=0.263 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc
Q 020551 94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (324)
Q Consensus 94 ~~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n 170 (324)
+...+++++|++++||++|...+++++.|++.. + .+++.. +...+++++++.++++++|++|||+|+|+|++|
T Consensus 79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~ 154 (375)
T PLN00012 79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN 154 (375)
T ss_pred ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC
Confidence 445677899999999999999999999999842 2 233221 112355667788999999999999999999999
Q ss_pred CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHH-------cHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHH
Q 020551 171 KPYLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTL 243 (324)
Q Consensus 171 ~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~l-------g~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v 243 (324)
+|+||+++|++++++++.+.+++.++++.+++.+ +++.+.++ +++++++++||. ||+++||++++|++.+
T Consensus 155 ~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi~l~~~YS~--pPl~lKr~~~~G~v~l 231 (375)
T PLN00012 155 EPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGSLLSYIYSA--PPLKLKQNGWIGNYAL 231 (375)
T ss_pred CCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHHHHhhhhcC--CchhhhHhccHhHHHH
Confidence 9999999999999999997766666665555443 33333333 457778999999 9999999999999887
Q ss_pred HHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 244 VILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 244 ~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
|..++. ++++... .+.|. +++..+++.++.++++.++++.||++|+|+|+++|++|+|+++|++++++++
T Consensus 232 G~~~~~---lp~~~g~--a~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~ 301 (375)
T PLN00012 232 GASYIS---LPWWAGQ--ALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWIC 301 (375)
T ss_pred HHHHHH---HHHHHHH--HHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHH
Confidence 665542 2322211 22332 3334444455666888999999999999999999999999999999998875
No 5
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2e-32 Score=261.19 Aligned_cols=215 Identities=22% Similarity=0.223 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHH-HHHHHHHHHHHHHHHhhhhcccchhhhhccCCC
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLG-VLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~-~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~ 173 (324)
...+++++|++++||+++..++++++.|++.+.. .+........ ++.++++..++++++|++|||+|+|+|++|+|+
T Consensus 22 ~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~ 99 (314)
T PRK07566 22 PTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPY 99 (314)
T ss_pred ccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCC
Confidence 3467799999999999999999998888876521 1222110111 234556778899999999999999999999999
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH-HHH
Q 020551 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQ 252 (324)
Q Consensus 174 Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~-~~~ 252 (324)
||+++|++++++++.+++++.++++++++.+|++.+.++ +++++++++||. ||+++||+++++|+.+++.+|. +..
T Consensus 100 Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~ 176 (314)
T PRK07566 100 RPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWW 176 (314)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999988888887665554 456777899999 9999999998899999887753 223
Q ss_pred HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.++++ .+. ..+++..++...+.++++.+++..||++|+|+|+++|+||+|+++|++++.++.
T Consensus 177 ~g~~~------~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~ 238 (314)
T PRK07566 177 AGAAA------FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIA 238 (314)
T ss_pred HHHHH------hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHH
Confidence 33222 121 123344445455566778888999999999999999999999999999988664
No 6
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=5.3e-32 Score=259.44 Aligned_cols=215 Identities=19% Similarity=0.234 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCC
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~-~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~ 173 (324)
..++++|+|++++||++++ ..++++.|.++|.+.. +......+ .+...++.+.+...++|++|||+|+|+|++|+|+
T Consensus 7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt 84 (331)
T PRK12392 7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT 84 (331)
T ss_pred chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCC
Confidence 3457799999999999998 6666777777875322 22221111 1122233445566778999999999999999999
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHHcH-------HHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHH
Q 020551 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246 (324)
Q Consensus 174 Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~-------~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~ 246 (324)
||+++|++|+++++.+.+++.++++.+++.++. +.+++..+++++++++||. ||+++||+++++++.+++.
T Consensus 85 Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~ 162 (331)
T PRK12392 85 RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFS 162 (331)
T ss_pred CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHH
Confidence 999999999999999999888888877666542 2222322457789999999 9999999998899888887
Q ss_pred HHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 247 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
++.....++.+ .+|. .++..+++..+.++|+.+.+++||++|+|+|++.|+||+|+++|++++.+++
T Consensus 163 ~~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~ 229 (331)
T PRK12392 163 YGFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVS 229 (331)
T ss_pred HHHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHH
Confidence 77533333222 2332 2334444445566888999999999999999999999999999999997664
No 7
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=9.4e-32 Score=255.75 Aligned_cols=213 Identities=22% Similarity=0.257 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~ 171 (324)
...+++++|++++||+++...+++++.|...+ + ++++.. +...+.+++++.++++++|.+|||+|+|.|+.|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 34567899999999999999999999998853 2 233221 1113444567799999999999999999999999
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHc-------HHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHH
Q 020551 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV 244 (324)
Q Consensus 172 p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg-------~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~ 244 (324)
|+||+++|++++++++.+++++.++++++++.+. ++.+.++ +++++++++||. ||+++||++++|++.++
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence 9999999999999999998888888777665543 3333333 467788999999 99999999988998887
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 245 i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
..++.....+.++ +.| ++++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++.++..
T Consensus 164 ~~~~~~~~~~~~a-----~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~ 233 (306)
T TIGR02056 164 ASYIALPWWAGHA-----LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICV 233 (306)
T ss_pred HHHHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHH
Confidence 6555322222121 223 233444455556678889999999999999999999999999999999887643
No 8
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=3.5e-32 Score=255.51 Aligned_cols=202 Identities=20% Similarity=0.229 Sum_probs=164.8
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCcccc
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~s 178 (324)
++++|++++||+++...+++++.|.+++.+.. .++. .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 37899999999999999999999998885422 2322 145667888999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (324)
Q Consensus 179 G~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~ 258 (324)
|++|+++++.+++++.++++.+++.++++.+.++ ++++++.++|+. ++||++.++|++++..+|..+..|+.+.
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888887766554 456667899996 5899998899999988887666665432
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 259 ~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.+ . ... +++....++|+.+.++.||++|+|+|+++|+||+|+++|+|++.+++
T Consensus 151 -----~~---~-~~~-~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~ 203 (279)
T PRK09573 151 -----FN---V-LRI-IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIA 203 (279)
T ss_pred -----cc---c-hHH-HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHH
Confidence 11 1 112 22333445778889999999999999999999999999999988754
No 9
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.5e-32 Score=253.87 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=166.2
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccc
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~ 177 (324)
+++++|++++||+++....++++.|.++|.+.. ++. .+++++++.+++++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~---~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGL---PLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC---chH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 478999999999999999999999999885432 211 24556788999999999999999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHH
Q 020551 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257 (324)
Q Consensus 178 sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~ 257 (324)
+|++|+++++.+++++.++++++++.+|+..+.++ +++++.+++||. ++||+++++++++++.+|.++..++.+
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887665554 456778899997 589999889999988888766666543
Q ss_pred HhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 258 ~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
. +.. +...+++....++|+...++.+|++|+|+|+++|+||+|+++|+|++.+++
T Consensus 150 ~------~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~ 204 (279)
T PRK12884 150 V------GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIA 204 (279)
T ss_pred h------CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHH
Confidence 2 221 112333344556788889999999999999999999999999999998754
No 10
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=4.9e-32 Score=254.11 Aligned_cols=204 Identities=24% Similarity=0.250 Sum_probs=163.0
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCcccc
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~s 178 (324)
++|+|++++||+++..+.++.+.|+++|.+... +... .++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~---~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSL---TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 478999999999999999999999999854321 1111 35667888999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (324)
Q Consensus 179 G~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~ 258 (324)
|++|+++++.+++++.++|+.+++.+++..+.++ ++++++.++|+. |+||++.++|++++...|.++.+|+.+
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999888887665554 456667889987 789999889999887777554455332
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 259 ~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.+... ....+.+....++++...+++||++|+|+|+++|+||+|+++|+|++.+++
T Consensus 151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~ 206 (276)
T PRK12882 151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVA 206 (276)
T ss_pred -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHH
Confidence 22111 112223334445677889999999999999999999999999999998764
No 11
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.1e-30 Score=247.30 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=164.9
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC-----CC
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-----PY 173 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~-----p~ 173 (324)
++|.|++.+||+++..++.++++|.++|+...+++++.. ++++++++++++.++|.+|||+|+|.|..|+ ++
T Consensus 3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~ 79 (296)
T PRK05951 3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ 79 (296)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence 589999999999999999999999999976545677543 5667789999999999999999976665554 78
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHH----HHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551 174 LPLASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (324)
Q Consensus 174 Rpl~sG~is~~~a~~~~~~~~~lgl~la----~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~ 249 (324)
||+++|++|+++++...+++..+++.++ +..+++.+.++ +++++.++.||. ||+++|+++ +||+.+++.+|+
T Consensus 80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~ 155 (296)
T PRK05951 80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSH 155 (296)
T ss_pred CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHH
Confidence 9999999999999999887666654432 23354444443 568889999999 999999987 699999999998
Q ss_pred HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319 (324)
Q Consensus 250 ~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~ 319 (324)
.+++|.+... ++ .+++..+......++++....+.||++|+|+|+++|+||+|+++|+|++.+
T Consensus 156 ~~vlg~~~~~-----~~--~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a~~ 218 (296)
T PRK05951 156 MLVMGLIYVW-----LG--NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAAL 218 (296)
T ss_pred HHHHHHHHHH-----hC--cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhHHH
Confidence 7777765432 22 223344444556667788889999999999999999999999999999843
No 12
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=6.3e-31 Score=251.04 Aligned_cols=213 Identities=12% Similarity=0.042 Sum_probs=164.9
Q ss_pred HHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC----CCCc
Q 020551 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP 175 (324)
Q Consensus 100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~----p~Rp 175 (324)
++.|++++||+++..+++++++|.++|+...+++++.. +++++++++++|.++|.+|||+|++.|..++ ++|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 68899999999999999999999999975445667543 5667788899999999999999998766654 5799
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHH----HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHH
Q 020551 176 LASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (324)
Q Consensus 176 l~sG~is~~~a~~~~~~~~~lgl~----la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~ 251 (324)
+++|.+++++++..++.+..++.+ +.+..|++.+.++ +++++.+++||. ||+++||+| +||+.+++.+|+.+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988777666554 5666676555454 578889999999 999999999 79999999999877
Q ss_pred HHHHHHHhhhhhhCC--------CCCC--hHH----HHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccce
Q 020551 252 QIPYFIHSQTYLLGK--------PFEV--TGP----FVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317 (324)
Q Consensus 252 ~lg~~~~~~~~v~g~--------~~~~--~~~----~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a 317 (324)
+.+.+... +...+. ..++ +.. .++....+++.+..+++.||+||+|+|+++|+||+|+++|+|++
T Consensus 156 v~g~~yv~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a 234 (317)
T PRK13387 156 FLLAVYIN-TNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG 234 (317)
T ss_pred HHHHHHHh-cCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence 66665431 110000 0000 000 11234555667778899999999999999999999999999998
Q ss_pred eee
Q 020551 318 SIY 320 (324)
Q Consensus 318 ~~l 320 (324)
.++
T Consensus 235 ~~l 237 (317)
T PRK13387 235 VVL 237 (317)
T ss_pred HHH
Confidence 865
No 13
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=5.2e-31 Score=247.28 Aligned_cols=202 Identities=23% Similarity=0.255 Sum_probs=158.9
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCcccc
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~s 178 (324)
++++|++++||+++....++.+.|.+++.+..++ +.. .++.+++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3689999999999999999999999887543221 111 33455677888899999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (324)
Q Consensus 179 G~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~ 258 (324)
|++++++++.++.++.++|+++++.+|++.+.++ +++.+.+++|+. ++|++++++|++++..+|.....|+.+.
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~ 150 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV 150 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988888888766554 456677999997 6788888899999888876444554321
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 259 ~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
+. .+...+.. .+.++++..+++.||++|+|+|+++|+||+|+++|+|++++++
T Consensus 151 ------~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~ 203 (277)
T PRK12883 151 ------GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIG 203 (277)
T ss_pred ------cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHH
Confidence 21 12222221 2234566788899999999999999999999999999987754
No 14
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=2.2e-30 Score=244.71 Aligned_cols=208 Identities=16% Similarity=0.146 Sum_probs=162.9
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccch--hhhh--ccCCCC
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDK--INKPYL 174 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~--e~D~--~n~p~R 174 (324)
.++.|++++||+++..+++++++|.++|... +.+++.. ++++++++++++.++|.+|||+|+ +.|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3689999999999999999999999998532 3455432 456678899999999999999999 4674 456799
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHH----HHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551 175 PLASGELSMGTGIAICAGSALLSLALAF----LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (324)
Q Consensus 175 pl~sG~is~~~a~~~~~~~~~lgl~la~----~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~ 250 (324)
|+++|++|+++++.++.++.+++++++. ..+++.+.++ +++++++++||. ||.++|+++ +||+.+++.+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence 9999999999999888777666554433 3455444333 457788899999 899999988 5999999888876
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
+..+.+.. ..+ ..++..++...+.++++...++.||++|+|+|+++|+||+|+++|+|+++++.
T Consensus 154 ~~~~~~~~-----~~~--~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~ 217 (293)
T PRK06080 154 IVLGTYYL-----QAG--TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLH 217 (293)
T ss_pred HHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHH
Confidence 65554432 111 23444555566677888999999999999999999999999999999987654
No 15
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.8e-30 Score=245.28 Aligned_cols=209 Identities=18% Similarity=0.201 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhcc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~ 171 (324)
+.++++++|+|++||++.+.+....+.|.++|... .+.+++.. +++++++.+++.+++|++|||+|+|+|++|+
T Consensus 3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 45678999999999999999999999998887521 12234332 4566788889999999999999999999998
Q ss_pred --CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551 172 --PYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (324)
Q Consensus 172 --p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~ 249 (324)
++||+++|++|+++++.+++++.++++.+++.++++...++ +..++....|+. +||++.+++++.++.+|.
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~ 152 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGL 152 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHH
Confidence 48999999999999999988888888888878887766554 345666889986 899999999999999998
Q ss_pred HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 250 ~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
++..|+.+.. |. .+...+++.+..++|+.+.+++++++|+|+|+++|++|+|+++|++++.+++
T Consensus 153 ~~l~G~~av~-----g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~ 216 (291)
T PRK12874 153 APIAGVVAVL-----GE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFIS 216 (291)
T ss_pred HHHHHHHHHc-----CC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHH
Confidence 8888875431 22 2323334445557899999999999999999999999999999999987653
No 16
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.97 E-value=5.8e-31 Score=247.59 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=162.4
Q ss_pred HHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc--CCCCccc
Q 020551 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLPLA 177 (324)
Q Consensus 100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n--~p~Rpl~ 177 (324)
+++|++++||++.....+....|.++|.+... ++.. +++++++.+++++++|++|||+|+|+|++| +|+||++
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 68999999999999998888889988854322 3321 455678899999999999999999999999 5699999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHH
Q 020551 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257 (324)
Q Consensus 178 sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~ 257 (324)
+|++|+++++.+++++.++++++++.++.+...++ .++.++.+.|+. +||++.+++++.|+.+|.++..|+.+
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a 149 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA 149 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888778888888887665544 345566788986 89999999999998888777777654
Q ss_pred HhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 258 ~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.. |. .+.....+++....++|+.+.+++||++|+|+|+++|+||+|+++|+|++.++.
T Consensus 150 ~~-----g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~ 207 (282)
T TIGR01475 150 VI-----GT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIA 207 (282)
T ss_pred Hh-----CC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHH
Confidence 31 22 221123334445556889999999999999999999999999999998876654
No 17
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.1e-30 Score=247.43 Aligned_cols=209 Identities=19% Similarity=0.230 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--C
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--P 172 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p 172 (324)
..+.++++|++++||++.+...++.+.|+++|.+..+ ++.. +++.+++.+++++++|++|||+|+|+|++|+ +
T Consensus 10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~ 84 (300)
T PRK13106 10 NTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK 84 (300)
T ss_pred hhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence 3567899999999999999999999999998854322 3322 3456788899999999999999999999995 5
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252 (324)
Q Consensus 173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~ 252 (324)
+||+++|++|+++++.+.+++.++++++++.+|+..+.++. +++++.+.|+. +||+++++++++|+.+|..+.
T Consensus 85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~ 157 (300)
T PRK13106 85 NRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVF 157 (300)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHH
Confidence 89999999999999999877777777777778876665543 44555678886 899999999999988887666
Q ss_pred HHHHHHhhhhhhCCCC-----CChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 253 IPYFIHSQTYLLGKPF-----EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~-----~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.|+.+.. |... ..+...+++.....+|+.+.+++|+++|+|+|+++|+||+|+++| +++.+++
T Consensus 158 ~G~~a~~-----g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~ 225 (300)
T PRK13106 158 SGAVAVL-----GLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFA 225 (300)
T ss_pred HHHHHHc-----CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHH
Confidence 7765432 2110 011122333334457899999999999999999999999999999 7776543
No 18
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.97 E-value=2.4e-30 Score=242.49 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=156.6
Q ss_pred HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCch--HHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCC
Q 020551 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~--~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~R 174 (324)
...++.+++++||.+|+.++.++.+|...+.. .+++ .. +++.+...+..+.+.|.+|||+|+|+|++|+|+|
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~ 82 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKG 82 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Confidence 45678899999999999999999999977632 2343 32 3344556678888999999999999999999999
Q ss_pred ccccCcCCHHHHHHHHHHHHHH----HHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551 175 PLASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (324)
Q Consensus 175 pl~sG~is~~~a~~~~~~~~~l----gl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~ 250 (324)
++++|++|+++++.+...+.++ ++++++..|++.+.+. +++.+++++||. ||+|+|++|++++++.. .+|.+
T Consensus 83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~~-~~g~p 158 (292)
T PRK13595 83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSNA-AYALP 158 (292)
T ss_pred CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHHH-HHHHH
Confidence 9999999999998875544333 5566777777665443 467789999999 99999999999988863 34543
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
...+. .+.|.. .....+ ....+|+.+.+++++++|+|+||+.|+||+|+++|+|++.+++.
T Consensus 159 ~~~~~------~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~ 219 (292)
T PRK13595 159 LALPA------LALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYAL 219 (292)
T ss_pred HHHHH------HHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHH
Confidence 33331 123321 112222 23347789999999999999999999999999999999987764
No 19
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2.5e-30 Score=243.21 Aligned_cols=205 Identities=17% Similarity=0.119 Sum_probs=162.9
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcc
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl 176 (324)
++|+|+|++||++.+.....++.|.++|.+.. .++.. +++.+++.+++.+++|++||++|+|+|++|+ ++||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 47899999999999999999999999985322 22221 3345567889999999999999999999995 49999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (324)
Q Consensus 177 ~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~ 256 (324)
++|++|+++|+.+.+++.++++.+++.+|+..+.++. +.+.+...|+. +||++++++++.|+..|.++..|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999998888888987765543 34555556665 8999999999998888877777765
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
+.. | ...+....+++.+...+|+.+.+++++++|+|+|++.|+||+|+++|++++.+++
T Consensus 150 Av~-----g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~ 208 (286)
T PRK12895 150 AVI-----P-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYIS 208 (286)
T ss_pred HHc-----C-CCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHH
Confidence 431 2 2222222233445556899999999999999999999999999999999887554
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=6.8e-30 Score=240.74 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=163.1
Q ss_pred HHHHHHHHHhHccchHHH---HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--
Q 020551 97 KRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-- 171 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~---~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~-- 171 (324)
.+++++|++++||++... ..++++.|.++|.... ..++.. .++++++++++++++|++|||+|+|+|+.|+
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~~---~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDISL---LVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHHH---HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 457899999999997654 5678888998885432 133322 4566788899999999999999999999765
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHH
Q 020551 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (324)
Q Consensus 172 p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~ 251 (324)
++||+++|++|+++++.+++++.++++++++.+|++.+.++ +++++.++.||. .||++.+++++.++.+++++
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~ 152 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI 152 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence 48999999999999999999999999988888887766554 456677889986 79988889999888777655
Q ss_pred HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 252 ~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
..++.+.. | . .++..+++....++|+.+.+++++++|+|+|+++|+||+|+++|++++.++.
T Consensus 153 l~~~~a~~-----g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~ 214 (285)
T PRK12847 153 LMAFAAVQ-----N-Q--LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYIL 214 (285)
T ss_pred HHHHHHHc-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHH
Confidence 55554321 2 2 2334445455667899999999999999999999999999999999887654
No 21
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=7.2e-30 Score=241.19 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--C
Q 020551 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (324)
Q Consensus 96 ~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~ 173 (324)
+.+++++|++++||++.....++.+.|+++|....+ ++. ..++.+++.+++++++|++|||+|+|+|++|+| +
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 346789999999999999998989999998854322 221 134566788999999999999999999999984 8
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHH
Q 020551 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (324)
Q Consensus 174 Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~l 253 (324)
||+++|++|++++..+.+.+.+.++++++..|++.+.+++ ++++..+.|+. +||++.++++..++.++.++..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999988766666666667778877665543 45566789986 7999999999999888876666
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
|+++.. | . .+...+++....++|+.+.+++++++|+|+|+++|+||+|+++|++++.+++
T Consensus 152 g~~a~~-----g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~ 211 (291)
T PRK12886 152 AWIAIR-----G-T--IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIA 211 (291)
T ss_pred HHHHHc-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHH
Confidence 655421 2 1 2333344445567889999999999999999999999999999999887754
No 22
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.7e-29 Score=237.83 Aligned_cols=203 Identities=17% Similarity=0.050 Sum_probs=161.2
Q ss_pred HHHHHHhHccchHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcc
Q 020551 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQS-LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (324)
Q Consensus 100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~-~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl 176 (324)
+++|++++||++.+.+....+.|.+.+... .+.+++.. +++.+++.+++++++|++|||+|+|+|++|+ ++||+
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 689999999999999888777777666421 12234322 4566788999999999999999999999998 58999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (324)
Q Consensus 177 ~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~ 256 (324)
++|++|+++++.+.+++.++++.+++.+++..+.++ .++++..+.|+. .||+++++++..|+.++.++..|++
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~ 151 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWI 151 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888878887665554 345556778976 7999999999998888776666655
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
+. .|. .++..+++.+..++|+.+.+++|+++|+|+|+++|+||+|+++|+|++.++
T Consensus 152 a~-----~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~ 207 (284)
T PRK12888 152 AV-----TGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWA 207 (284)
T ss_pred HH-----cCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHH
Confidence 43 132 233444555566789999999999999999999999999999999998764
No 23
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=7.5e-30 Score=240.99 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=162.1
Q ss_pred HHHHHHHHHhHccchHHHHH---HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC-C
Q 020551 97 KRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-P 172 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~---~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~-p 172 (324)
..++++|++++||++..... ++++.|.++|.+.. .++.. +++.+++.+++++++|++|||+|+|+|+.|+ +
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt 80 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVERT 80 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence 35789999999999866554 67888888885432 23222 3456678889999999999999999998754 3
Q ss_pred -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHH
Q 020551 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (324)
Q Consensus 173 -~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~ 251 (324)
+||+++|++|+++++.+++++.++++.+++.+++..+.++ +++++..+.|+. .||++.+++++.++.+|+++
T Consensus 81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 153 (290)
T PRK12870 81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFAV 153 (290)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhHH
Confidence 8999999999999999999999999998888887766555 345667789986 79988889998888888766
Q ss_pred HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 252 ~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
..|+.+. .|. .+...+++....++|+.+.+++++++|+|+|+++|+||+|+++|++++.+++
T Consensus 154 l~g~~a~-----~g~---~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~ 215 (290)
T PRK12870 154 LISWSAV-----TGH---LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIG 215 (290)
T ss_pred HHHHHHH-----cCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHH
Confidence 6665432 122 2333344445567899999999999999999999999999999999887654
No 24
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=4.7e-29 Score=236.56 Aligned_cols=209 Identities=14% Similarity=0.045 Sum_probs=164.4
Q ss_pred HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhccCCCC
Q 020551 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYL 174 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~n~p~R 174 (324)
.++++.|++.+||+++..+++++++|.++|+...+++++.. +++++++++++|.++|.+|||+|++ .|+. +++
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 35689999999999999999999999999976545677643 5677889999999999999999997 6773 332
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHH----HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551 175 PLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (324)
Q Consensus 175 pl~sG~is~~~a~~~~~~~~~lgl~----la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~ 250 (324)
...++..+++++...++++.+++++ +.+..|++.+.++ +++++.+++||. ||+++|+++ +||+.+++++|+.
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHH
Confidence 2345555788888887766655543 4445565544444 568899999999 999999999 5999999999987
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
++.+.+.. ..+ ++++..++..+..++++..++..||+||+|+|+++|+||+|+++|+|+++++.
T Consensus 160 ~v~g~~yv-----~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly 223 (304)
T PRK07419 160 AVAAALYS-----QTP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLL 223 (304)
T ss_pred HHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHH
Confidence 77776643 122 34545555566777888889999999999999999999999999999987653
No 25
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=4.1e-29 Score=238.27 Aligned_cols=209 Identities=20% Similarity=0.150 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhH---ccchHHHHHHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhh
Q 020551 95 VVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK 168 (324)
Q Consensus 95 ~~~~~l~~~l~l~---Rp~~~~~~~~~~~~g~~lA~~~~---~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~ 168 (324)
.+..++++|++++ ||.......++++.|.++|.... ...++.. +++++++++++++++|++|||+|+|+|+
T Consensus 25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~ 101 (314)
T PRK12878 25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWH---LFLFFVGAIAMRGAGCTYNDIVDRDIDA 101 (314)
T ss_pred hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3557899999999 88899999999999999985421 1233221 4567789999999999999999999998
Q ss_pred ccCC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHH
Q 020551 169 INKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246 (324)
Q Consensus 169 ~n~p--~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~ 246 (324)
.+++ +||+++|++|+++++.+.+++.++|+.+.+..|++.+.++ +++++..+.|+. +||++.++++..|+.
T Consensus 102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~ 174 (314)
T PRK12878 102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGLA 174 (314)
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHHH
Confidence 7764 8999999999999999999999999888888887666554 456677899986 899888888888877
Q ss_pred HHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 247 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
++++...|+++.. |. .++..+++.....+|+...+.+++++|+|+|+++|+||+|+++|++++.++.
T Consensus 175 ~~~~~l~g~~a~~-----g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~ 241 (314)
T PRK12878 175 FSWGALMGWAAHF-----GS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLV 241 (314)
T ss_pred HHHHHHHHHHHHh-----CC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHH
Confidence 7766666755431 32 2333334444556789999999999999999999999999999999987654
No 26
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.96 E-value=4.4e-29 Score=235.63 Aligned_cols=205 Identities=24% Similarity=0.280 Sum_probs=164.2
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCc
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rp 175 (324)
..++.+++..||.++.....+.+.|..++....++ +...++++++++++.+++|++||++|+|+|++|+| +||
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP 85 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP 85 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence 34555666666667777777777887777532221 22356677888999999999999999999999999 999
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHH
Q 020551 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (324)
Q Consensus 176 l~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~ 255 (324)
+++|++|+++++.+.+++.++++.+++.++++.+.+. +++.++.+.|. ++||.+++++++++..++..+..|+
T Consensus 86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~ 158 (289)
T COG0382 86 LPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGA 158 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998775554 56888899994 4999999999999988887776776
Q ss_pred HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
.+. .|. .....+++.+...+|+.+.++++|++|+|+|++.|++|+|+.+|++++.+++.
T Consensus 159 ~a~-----~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~ 217 (289)
T COG0382 159 AAV-----GGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALAL 217 (289)
T ss_pred HHH-----hCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHH
Confidence 543 221 22334445556678999999999999999999999999999999999887653
No 27
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.96 E-value=4.3e-29 Score=235.01 Aligned_cols=204 Identities=17% Similarity=0.201 Sum_probs=158.4
Q ss_pred HHHHHHHHhHccchHH---HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--C
Q 020551 98 RKLNAISHVTRYYAQI---NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--P 172 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~---~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p 172 (324)
+++++|++++|+++.. ...++++.|..+|.+..+ ++.. +++.+++.+++++++|++|||+|+|+|++++ +
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 4689999999866544 445567788888754322 2221 3455677889999999999999999998765 3
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252 (324)
Q Consensus 173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~ 252 (324)
+||+++|++|+++++.+++++.++++.+++.+++..+.++ +++++..++|+. .||++.++++..++.+|+++.
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~ 150 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGIP 150 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999999888888887666554 456666889975 788888899988888887666
Q ss_pred HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
+++.+.. | . .+...+++.....+|+...++.++++|+|+|+++|+||+|+++|+|++.+++
T Consensus 151 ~g~~a~~-----~-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~ 211 (282)
T PRK12848 151 MAFAAVQ-----G-S--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG 211 (282)
T ss_pred HHHHHHh-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH
Confidence 6655421 2 1 2333444445566899999999999999999999999999999999887653
No 28
>PLN02922 prenyltransferase
Probab=99.96 E-value=8.5e-29 Score=235.98 Aligned_cols=214 Identities=17% Similarity=0.148 Sum_probs=161.2
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhccCCCCc
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP 175 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~n~p~Rp 175 (324)
++++.|++.+||+++..+++++++|.++|+...+.+++.. +++++++++++|.++|.+|||+|++ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 4588999999999999999999999999976545677653 5677899999999999999999986 5764432212
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHH---HHH--HcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551 176 LASGELSMGTGIAICAGSALLSLAL---AFL--SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (324)
Q Consensus 176 l~sG~is~~~a~~~~~~~~~lgl~l---a~~--lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~ 250 (324)
-..| ++++++..+++++++++.. ... .|++.+.+ .+++++.+++||. ||+++|+++ +||+.+++.+|..
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~i-G~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l 163 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILL-LAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPL 163 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHH
Confidence 2234 8999888877666655432 212 24444333 3578899999999 999999999 5999999999987
Q ss_pred HHHHHHHHhhhhhhCCC-C---CChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 251 LQIPYFIHSQTYLLGKP-F---EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 251 ~~lg~~~~~~~~v~g~~-~---~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
++.+.|.. ++..++.. . ++++..++..+.+++++.+++.+||+||+|+|+++|+||+|+++|+|++.++.
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~ 237 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVV 237 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHH
Confidence 77776543 11111110 0 12344556667778888999999999999999999999999999999987653
No 29
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.96 E-value=7e-29 Score=233.22 Aligned_cols=204 Identities=15% Similarity=0.156 Sum_probs=154.7
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcc
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl 176 (324)
++++|++++||++.....++++.|+++|.+. ..++.. +++.+++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 3689999999999999999999999988532 223322 3456778889999999999999999999987 69999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHH
Q 020551 177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (324)
Q Consensus 177 ~sG~is~~~a~~~~~~~~~lgl~la~~-lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~ 255 (324)
++|++|+++++.+++++.++|+.+++. +++.......+..++..+.||. ++||++++..++.++..+.++..|+
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~ 150 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGY 150 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776 7765432323344567788996 5899997544444444444444444
Q ss_pred HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
.+. .| +.+...+++...+++|+.++...++++|+|+|+++|+||+|+++|+|++.+.
T Consensus 151 ~a~-----~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~ 207 (279)
T PRK12869 151 ASG-----TG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRA 207 (279)
T ss_pred HHH-----hC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHH
Confidence 332 12 1233444445556678887777788899999999999999999999988754
No 30
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=1.2e-28 Score=233.53 Aligned_cols=206 Identities=14% Similarity=0.067 Sum_probs=157.4
Q ss_pred HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCC
Q 020551 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYL 174 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~R 174 (324)
++++++|++++||++++...++++.|+++|.+. .+++.. +++++++.+++++++|++|||+|+|+|++|+ |+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 457999999999999999999999999998532 234322 4556788999999999999999999999987 699
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHH-HHHHHHHH
Q 020551 175 PLASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV-ILMGLILQ 252 (324)
Q Consensus 175 pl~sG~is~~~a~~~~~~~~~lgl~la~~-lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~-i~~g~~~~ 252 (324)
|+++|++|+++++.+++++.++|+++++. .+.....++++......+.|+. ++||+++ +|..++ +..+.++.
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l 155 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL 155 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence 99999999999999999999888887654 4655444432222334668986 5899995 565554 44445566
Q ss_pred HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.|+++. .| +.++..+++.+..++|+...+..+.++|+|+|+++|+||+|+++|++++.+++
T Consensus 156 ~g~~a~-----~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~ 216 (296)
T PRK04375 156 IGWAAV-----TG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQI 216 (296)
T ss_pred HHHHHh-----CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHH
Confidence 665542 12 22333444455667888888888889999999999999999999999887643
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.96 E-value=1.7e-28 Score=230.87 Aligned_cols=202 Identities=17% Similarity=0.169 Sum_probs=155.5
Q ss_pred HHHHHhHccc---hHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCc
Q 020551 101 NAISHVTRYY---AQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (324)
Q Consensus 101 ~~~l~l~Rp~---~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rp 175 (324)
++|.+++|++ .+....++...|..+|....+..++.. .++.+++.+++++++|++|||+|+|+|+.|++ +||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 4566666655 555567788888888853211112221 34556777899999999999999999987653 899
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHH
Q 020551 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (324)
Q Consensus 176 l~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~ 255 (324)
+++|++++++++.++.++.++++++++.+|+..+.++ ++++++.+.|+. +||++.++++..|+.++++...|+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887766554 456777999986 899999999999888887777776
Q ss_pred HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
++. .|. .++..+++.....+|+.+.+.+++++|+|+|+++|+||+|+++|++++.+.
T Consensus 152 ~a~-----~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~ 208 (281)
T TIGR01474 152 AAV-----TGD---LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWL 208 (281)
T ss_pred HHH-----cCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHH
Confidence 542 232 233333334455688999999999999999999999999999999887553
No 32
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=2.4e-28 Score=230.00 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=156.7
Q ss_pred ccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhcc--CCCCccccCcCCH
Q 020551 108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKIN--KPYLPLASGELSM 183 (324)
Q Consensus 108 Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~n--~p~Rpl~sG~is~ 183 (324)
||+++..++.++++|.++|+... .+++.. +++++++++++|.++|.+|||+|++ .|+.+ .|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999997543 677543 5677889999999999999999985 36433 4789999999999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHcH-----HHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHH
Q 020551 184 GTGIAICAGSALLSL----ALAFLSGS-----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (324)
Q Consensus 184 ~~a~~~~~~~~~lgl----~la~~lg~-----~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg 254 (324)
+++...++++++++. ++.+..|+ +.+.+..+++++.+++||. ||+++|+++ +||+.+++.+|+.+++|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence 999988877666544 34444453 1332223567888999999 999999999 69999999999877777
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 255 ~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
.+.. ..+ .+++..++.....++++.+++..||+||+|+|+++|+||+|+++|+|+++++
T Consensus 154 ~~yv-----q~~--~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l 212 (284)
T TIGR00751 154 TQYL-----QAH--RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMY 212 (284)
T ss_pred HHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHH
Confidence 6543 122 2344444545566778888999999999999999999999999999998765
No 33
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=227.34 Aligned_cols=206 Identities=19% Similarity=0.244 Sum_probs=161.7
Q ss_pred HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCC
Q 020551 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYL 174 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~R 174 (324)
++++++|++++||+++....++++.|+++|... +.++.. .++++++..+.++++|++|||+|+|+|+.++ ++|
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 457899999999999999999999999998432 334322 3455678889999999999999999998765 489
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHH
Q 020551 175 PLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (324)
Q Consensus 175 pl~sG~is~~~a~~~~~~~~~lgl~la-~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~l 253 (324)
|+++|++|+++++.+++++.++|+.+. +..+.....++.+..++..++||. .+||++++++++.++..+.++..
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~ 159 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV 159 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence 999999999999999998888888754 445765443332223345678985 48999999999888888877778
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
|+.+.. | . .+...+++..++++|+.......+++|+|+|+++|++|+|+++|+|++.+.
T Consensus 160 G~~a~~-----g-~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~ 218 (306)
T PRK13362 160 GYCAVT-----G-Q--FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH 218 (306)
T ss_pred HHHHHc-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence 876532 2 2 233444555666789998888899999999999999999999999988753
No 34
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=1.6e-27 Score=224.42 Aligned_cols=202 Identities=12% Similarity=0.015 Sum_probs=155.2
Q ss_pred HHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhh--hhccCCCCccccCc
Q 020551 103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEI--DKINKPYLPLASGE 180 (324)
Q Consensus 103 ~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~--D~~n~p~Rpl~sG~ 180 (324)
|++.+||+++..++.++++|.++|+...+.+++.. +++++++++++|.++|.+|||+|++. |+.+. . ...++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence 67899999999999999999999976545677653 56677899999999999999999864 76422 1 122333
Q ss_pred CCHHHHHHHHHHHHHHHH----HHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551 181 LSMGTGIAICAGSALLSL----ALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (324)
Q Consensus 181 is~~~a~~~~~~~~~lgl----~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~ 256 (324)
.+++++.....++..++. ++.+..|++.+.++ +++++.+++||. ||+++|+++ +||+++++.+|+.++.+.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence 457777777665555443 34445564333343 568899999999 999999999 5999999999987777765
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
.. ..+ ++++..++..+..++.+.+++..||+||+|+|+++|+||+|+++|+|++.++
T Consensus 153 yv-----qt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l 209 (285)
T TIGR02235 153 YA-----QSQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKI 209 (285)
T ss_pred HH-----hCC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHH
Confidence 43 122 3455555556677788889999999999999999999999999999998765
No 35
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.96 E-value=8.9e-28 Score=225.75 Aligned_cols=202 Identities=17% Similarity=0.110 Sum_probs=151.5
Q ss_pred HHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcccc
Q 020551 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS 178 (324)
Q Consensus 101 ~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl~s 178 (324)
|+|++++||+++....++++.|.++|.+.. .+++.. +++++++.+++++++|++|||+|+|+|++|+ ++||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999999985432 234322 4556788999999999999999999999976 5999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHH-hhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551 179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (324)
Q Consensus 179 G~is~~~a~~~~~~~~~lgl~l-a~~lg~~~l~l~ll~~~~-l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~ 256 (324)
|++|++++..+++++.++|+.+ .+..++....++ +++++ .+++||. .+||++++.+++.++..+.++..|++
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888874 445776655444 33444 3789995 38999876555555444444455544
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
+. ++. .++..+++.....+|+........++|+|+|+++|+||+|+++|+|++.++
T Consensus 151 a~------~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~ 206 (280)
T TIGR01473 151 AV------TGS--ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQ 206 (280)
T ss_pred Hh------cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHH
Confidence 32 222 233334444455678777666677899999999999999999999987654
No 36
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.96 E-value=1.1e-27 Score=226.08 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=156.8
Q ss_pred HHHHHHHHhHccchHHHH---HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--C
Q 020551 98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--P 172 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~---~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p 172 (324)
+++++|+|++|.+..... .+++..|..++....+..++.. +++.+++.+++.+++|++||++|+|+|++|+ +
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 468999999998876555 4455566666531111112222 3456778899999999999999999999875 4
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252 (324)
Q Consensus 173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~ 252 (324)
+||+++|++|+++++.+.+++.++++.+.+.++++.+.++ .++++..+.|+. +||++++++++.|+.++.+..
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l 153 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGAL 153 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888887666554 456667889986 899999999998888887677
Q ss_pred HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
.|+.+. .|. .. ....+.+.....+|+...+++++++|+|+|+++|++|+|+++|+++..+++
T Consensus 154 ~g~~av-----~g~-~~-~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~ 215 (289)
T PLN02809 154 LGWAAV-----KGS-LD-PAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT 215 (289)
T ss_pred HHHHHH-----hCC-CC-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH
Confidence 776432 232 11 122222344455789999999999999999999999999999999666543
No 37
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.95 E-value=4.9e-27 Score=219.47 Aligned_cols=209 Identities=17% Similarity=0.080 Sum_probs=161.0
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhc----cC
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI----NK 171 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~----n~ 171 (324)
.+.+.|+++.||+++..++.++++|.++|......+++.. ++++++++++++.++|..|||+|++ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~---~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLV---ALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 3468999999999999999999999999976544566433 6778899999999999999999986 5643 22
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHH----HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHH
Q 020551 172 PYLPLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247 (324)
Q Consensus 172 p~Rpl~sG~is~~~a~~~~~~~~~lgl~----la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~ 247 (324)
.++.+...+++++..+...+.+...+.+ +....|++.+.+ .+++++++++|+. +|+++++.| +||+.+++++
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~l-G~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLL-GLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence 3456666677777777776655444333 334455543333 3578899999999 899999999 6999999999
Q ss_pred HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 248 g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
|+..+++.++. + +..+++..++..+..++.+..++..||+||+|+|++.|++|+|+++|++.++.+
T Consensus 159 G~l~v~g~~yi-q------t~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l 224 (303)
T COG1575 159 GPLIVLGAYYI-Q------TGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHH-h------cccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHH
Confidence 98777776543 1 123455555656666777888999999999999999999999999999998754
No 38
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=2.4e-27 Score=223.65 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=159.5
Q ss_pred HHHHHHHhHccchHHHHHHHHHHHHHHhhc---c-CC---CCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC
Q 020551 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQ---S-LS---QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (324)
Q Consensus 99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~---~-~~---~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~ 171 (324)
+++.|.++.|-++.+.+..-...|.++|.. . .+ ..++. .+++..++.+++.+++|++|||+|+|+|++|+
T Consensus 3 ~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~ 79 (300)
T PRK12876 3 RIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIK---TISLGGSAFFCARTVGIIVNQIIDCAIDKKNP 79 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCC
Confidence 589999999999999998888899999841 0 11 11222 24566788999999999999999999999999
Q ss_pred C--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551 172 P--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (324)
Q Consensus 172 p--~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~ 249 (324)
| +||+++|++|+++++.+.+++.++++++++.+|+..+.++ .+++++.+.|+. +||++++++++.|+..+.
T Consensus 80 RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~-~~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~ 152 (300)
T PRK12876 80 RTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLA-VLSTLLMIIYPY------TKRVTFLCHWILGLVYYL 152 (300)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HhcCCchhHHHHHHHHHH
Confidence 5 9999999999999999998777777788888898776665 356666689986 899999999998887776
Q ss_pred HHHHHHHHHhhhhhhCCCCCChH--HHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551 250 ILQIPYFIHSQTYLLGKPFEVTG--PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY 320 (324)
Q Consensus 250 ~~~lg~~~~~~~~v~g~~~~~~~--~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l 320 (324)
....++.+. .++...+.. ..++......+|..+.+++++++|+|+|++.|+||+|+++|++++.++
T Consensus 153 ~~l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~i 220 (300)
T PRK12876 153 AILMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRI 220 (300)
T ss_pred HHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHH
Confidence 556665542 232111100 111222334456778999999999999999999999999999987543
No 39
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=217.62 Aligned_cols=204 Identities=17% Similarity=0.205 Sum_probs=140.1
Q ss_pred HHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccC
Q 020551 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (324)
Q Consensus 100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG 179 (324)
+|.+++++||.+|+.+.+++..|+++| ++.+ ++.++ +.++......+.+.|.+|||+|+|.|+.|++.+.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~l---~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLFV---VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHHH---HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 478999999999999999999999998 3222 33221 11212233344444566999999999999774332 58
Q ss_pred cCCHHHHHHHHHHHHH-----HHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHH-HHHHHHHH
Q 020551 180 ELSMGTGIAICAGSAL-----LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVI-LMGLILQI 253 (324)
Q Consensus 180 ~is~~~a~~~~~~~~~-----lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i-~~g~~~~l 253 (324)
.++++++....+.+.+ +++.+....+++.+ ....++++.++.||. ||+|+|++|+.++++.+. .++. ..+
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~-~v~ 149 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASG-LVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSP-ALY 149 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHH-HHH
Confidence 8999987554433332 23333333344333 333578889999999 999999999877765433 3332 444
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
|.+. + ++. .++..++....+++|+.+++++||+||+|+||++|+||+|+++|+|++.+++.
T Consensus 150 G~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~ 210 (282)
T PRK13105 150 GLVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAV 210 (282)
T ss_pred HHHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHH
Confidence 4432 2 322 23344555566678899999999999999999999999999999999987653
No 40
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=3.4e-26 Score=215.68 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=155.0
Q ss_pred HHHHHHHHhHccchHHHH---HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--
Q 020551 98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-- 172 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~---~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p-- 172 (324)
+++++|++++||+.+... .++.+.|.+++....+ +... .++++++..++.+++|++||+.|+|+|+.|+|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~~---~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLLL---LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 358899999888866555 4466777766643212 2221 45667888999999999999999999998875
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHH
Q 020551 173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (324)
Q Consensus 173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~l----g~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g 248 (324)
+||+++|++|+++|+.+.+++.++++.+.+.+ ++..+.++ .++++....|+. +||++.+.+++.|+..+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence 99999999999999999999988888877665 44444444 345556788986 89999999999998888
Q ss_pred HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319 (324)
Q Consensus 249 ~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~ 319 (324)
.+..+||.+.. |. .++....+++.+...+|+...+++++++|+|+|+++|++|+|+++|++...+
T Consensus 153 ~~~l~gw~Av~-----g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~ 217 (294)
T PRK12873 153 FAVLIPWAAAE-----GS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKT 217 (294)
T ss_pred hHHHHHHHHHh-----CC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHH
Confidence 87778875432 32 2222233333345568999999999999999999999999999999865543
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.1e-25 Score=213.10 Aligned_cols=203 Identities=20% Similarity=0.178 Sum_probs=140.2
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc-------
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN------- 170 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n------- 170 (324)
+++++|++++||+++.....+++.|.++|....+.+++.. .+++++.+.++..++|++|||+|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4589999999999988888888888888742222344432 222233444555667899999999999875
Q ss_pred --C--CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcH----HHHHHHHHHHHHhhhhccCCCCccccccc---Ccch
Q 020551 171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGS----PAVLCAVIAWGLTGAAYSVPLPFLRWKSH---TFMA 239 (324)
Q Consensus 171 --~--p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~----~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~---~~l~ 239 (324)
| ++||+++|++|+++++.+.+++.++|+.+++.++. ..+.+ .+.+.++++.|+. .||. | .+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l-~~~~~~~~~~Y~~------~kr~~~~p-~~ 151 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVI-MLYSYGIEAFYQV------KKRNQKYP-VA 151 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc------cccccccc-HH
Confidence 3 48999999999999999999888888877665543 22222 2345677788886 2332 3 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551 240 PFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319 (324)
Q Consensus 240 ~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~ 319 (324)
.+..++.++.+...++ + ..|. .+...++...+.++|+.+++.+||++|+|+|+++|+||+|+++|++++.+
T Consensus 152 ~l~G~~~~~~~~~~g~-~-----~~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~ 222 (297)
T PRK12871 152 QLLGRTDFTLFPAAGY-L-----CYGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY 222 (297)
T ss_pred HHHHHHHHHHHHHHHH-H-----HhCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence 3333344444333332 2 1232 23333444456678999999999999999999999999999999998874
Q ss_pred e
Q 020551 320 Y 320 (324)
Q Consensus 320 l 320 (324)
+
T Consensus 223 ~ 223 (297)
T PRK12871 223 W 223 (297)
T ss_pred H
Confidence 3
No 42
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=9.2e-26 Score=212.16 Aligned_cols=208 Identities=22% Similarity=0.275 Sum_probs=142.3
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccc
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~ 177 (324)
+-+++++++.|+.+...+..++..+..... .. +... .+..+++.++.+.++|.+|||+|+|+|+.|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL-LL-GLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HH-cChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 357899999999999888877766542211 11 1111 2344567889999999999999999999999999988
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHhhhhccCCCCcc-cccccCcchhHHHHHHHHHHHHHHH
Q 020551 178 SGELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFL-RWKSHTFMAPFTLVILMGLILQIPY 255 (324)
Q Consensus 178 sG~is~~~a~~~~~~~~~lgl~l-a~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~-rlKr~~~l~~l~v~i~~g~~~~lg~ 255 (324)
+++...+.+..+..+...+++.+ +...|++.+.++ +++.+++++||. ||. ++|+.|.++|+++++.||..+.++.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 44333333332333333333333 223366555443 456778999998 555 6899999999999999986443332
Q ss_pred HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
+.. .+. .++...++...+++++.+.+++++|++|+|+|+++|++|+|+++|+|+++++..
T Consensus 152 ~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~ 211 (285)
T PRK12872 152 VYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLL 211 (285)
T ss_pred HHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHH
Confidence 221 111 123333333445556678889999999999999999999999999999987653
No 43
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=6.9e-25 Score=206.17 Aligned_cols=203 Identities=21% Similarity=0.233 Sum_probs=130.3
Q ss_pred HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHH--HHHHHHhhhhcccchhhhhccCCC
Q 020551 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQI--FMNISLCSLNQICDVEIDKINKPY 173 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~-~~~~~l~~~ll~~la~~--l~~~a~~~iNd~~D~e~D~~n~p~ 173 (324)
.+.++.|+++.||++|..++.+++.|.++|....++ +++.. +++++.+ ..+...|++|||+|+|+|+.|+++
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 457899999999999999999999999999654322 33321 1122222 233455678999999999999876
Q ss_pred CccccCcCCHHHHH---HH-HHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551 174 LPLASGELSMGTGI---AI-CAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (324)
Q Consensus 174 Rpl~sG~is~~~a~---~~-~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~ 249 (324)
+. |+...++.. .. .++...+++.+.+..+.....+ ++..+++++.||. ||+|+|++|+.+..+.++. ..
T Consensus 80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~~ 152 (282)
T PRK12875 80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-IL 152 (282)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--CCccchhccHHHHHHHHHH-HH
Confidence 54 222222211 11 1223333444444444332222 2456788999999 9999999997554443332 12
Q ss_pred HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI 321 (324)
Q Consensus 250 ~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~ 321 (324)
+...+++.. .+ +.++..++. ..++|+.+.+++|+++|+|+|+++|+||+|+++|+|++++++
T Consensus 153 ~~~~~y~~~------tg--~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~ 214 (282)
T PRK12875 153 PGVAAYALV------SG--SLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYC 214 (282)
T ss_pred HHHHHHHHH------cC--CCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHH
Confidence 222333221 12 233333322 235788899999999999999999999999999999998654
No 44
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.93 E-value=1.2e-25 Score=206.43 Aligned_cols=189 Identities=28% Similarity=0.381 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhc--cCCCCccccCcCCHHHHHHHHH
Q 020551 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICA 191 (324)
Q Consensus 114 ~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~--n~p~Rpl~sG~is~~~a~~~~~ 191 (324)
.++.+++.|..++.. ...++.. ++..++++++.+.++|.+|||+|+|+|+. |+|+||+++|+++++++...++
T Consensus 3 ~~~~~~l~~~~~~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~ 77 (257)
T PF01040_consen 3 LSFLPVLAGLALASG--GPFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL 77 (257)
T ss_pred HHHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence 445566666444432 2333322 34455667799999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCh
Q 020551 192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVT 271 (324)
Q Consensus 192 ~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~ 271 (324)
++.++++++++..+++.+.+. +++.+.+++|| ||+|+||+++++++++++.++..+.+++++. ++. .+
T Consensus 78 ~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~ 145 (257)
T PF01040_consen 78 ILLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GGD--PP 145 (257)
T ss_pred HHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CCc--cc
Confidence 999999998888887766554 45666779999 6889999998899999988886666665432 221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551 272 GPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319 (324)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~ 319 (324)
...+....+.+++.......+|++|+|+|+++|+||+|+++|++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 233333334456667778888999999999999999999999999875
No 45
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=3e-24 Score=202.37 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccC
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~ 225 (324)
+++.+...++|++|||+|+|+|++|+|+||.+ +++.+..++++..++|+++++..|++. ++ +++.+.+++||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhcC
Confidence 34567888999999999999999999999986 788899999999999999999888542 33 457778999997
Q ss_pred C----CCcccccccCcchhHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhH
Q 020551 226 P----LPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDK 301 (324)
Q Consensus 226 ~----lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~ 301 (324)
+ +.|+|+|+++.+||+++++.||..+..+. . .. .+ .+ ........+.....++++.+||++|+|||+
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~--g--~~-~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr 208 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA--G--SY-CG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDT 208 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH--H--hh-hh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 4 23558999999999999999996332211 0 00 01 01 111111111112235667899999999999
Q ss_pred HcCCcccceeecccceeeeee
Q 020551 302 AFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 302 ~~G~rTlpv~lG~k~a~~l~~ 322 (324)
+.|++|+|+++|+++++++..
T Consensus 209 ~~G~kTLPV~lG~~~A~~l~~ 229 (307)
T PRK13591 209 LAGIKTLPVSLGEQKTRNLLL 229 (307)
T ss_pred HcCCeeEEEEECHHHHHHHHH
Confidence 999999999999999987643
No 46
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.91 E-value=5.4e-24 Score=199.18 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 020551 139 LGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218 (324)
Q Consensus 139 ~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~ 218 (324)
.+.+++++.+++..+++|++|||+|+|+|++|+|+||+|||++|+++++.+++++.++++.++... ... +...+
T Consensus 46 ~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~ 119 (299)
T PRK13592 46 IQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFL 119 (299)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHH
Confidence 346667777888999999999999999999999999999999999999999988877777665443 111 12333
Q ss_pred hhhhc-----cCCCCcccccccCcchhHHHHHHHHHHHHHH--HHHH-hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHH
Q 020551 219 TGAAY-----SVPLPFLRWKSHTFMAPFTLVILMGLILQIP--YFIH-SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGL 290 (324)
Q Consensus 219 l~~~Y-----s~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg--~~~~-~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~ 290 (324)
..+.| +. ++|+.++.||+.++...|.++..| ++.. ......|.+. .....+.+.+..++.+.++|+
T Consensus 120 i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI 193 (299)
T PRK13592 120 FLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEV 193 (299)
T ss_pred HHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHH
Confidence 45556 76 689999999999988777555433 2211 0001122211 111112222333355789999
Q ss_pred HhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 291 LKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 291 ~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
.+|++| |||++ |.+|+|+++|.|++.+++.
T Consensus 194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~ 223 (299)
T PRK13592 194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIE 223 (299)
T ss_pred HHhhcC-Ccccc-CCeeechhccchhHHHHHH
Confidence 999999 88886 5999999999999887654
No 47
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.6e-22 Score=187.41 Aligned_cols=206 Identities=15% Similarity=0.128 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--C
Q 020551 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (324)
Q Consensus 96 ~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~ 173 (324)
.+.++|+|+++++|.......++.+.|+++|.. +..++.. ++++.++..+..++++++|+|+|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 457899999999999999999999999999975 2234332 45677889999999999999999999999987 8
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551 174 LPLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252 (324)
Q Consensus 174 Rpl~sG~is~~~a~~~~~~~~~lgl~la-~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~ 252 (324)
||+++|++++++++.+++++.++|+.+. +..|+....+++...++-.+.||.+ +||++....+..++..+.|..
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~NiviGg~aGa~Ppl 163 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQNIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCcccceeeeecccccccc
Confidence 9999999999999999999999998876 6777665555444445667899984 799997555555666667888
Q ss_pred HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~ 319 (324)
+||.++. |. . +...+++.+.+++|+-..-..-.++-.|+-+++|+..+|++-|++.+++
T Consensus 164 iGwaAvt-----g~-~--~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~ 222 (304)
T COG0109 164 IGWAAVT-----GS-I--SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKR 222 (304)
T ss_pred ceeeeee-----CC-C--CchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHH
Confidence 8876542 32 2 2233334445567764333333344455568999999999999998865
No 48
>PLN02776 prenyltransferase
Probab=99.88 E-value=2e-21 Score=186.13 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=141.0
Q ss_pred hHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCccccCcCCH
Q 020551 106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM 183 (324)
Q Consensus 106 l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rpl~sG~is~ 183 (324)
++||......+++.+.|+++|.+... ++.. +++..++++++.+++|++||++|+|+|+.|+| +||+++|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~~---l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLPG---LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 46888888889999999999854322 2221 34567889999999999999999999999774 99999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHH-HHHHHHHHHHhhh
Q 020551 184 GTGIAICAGSALLSLA-LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIPYFIHSQT 261 (324)
Q Consensus 184 ~~a~~~~~~~~~lgl~-la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g-~~~~lg~~~~~~~ 261 (324)
++++.+++++.++|+. +++.+|+..+.++.+..++....|+. +||++++ |.++|...| ++..+||.++.
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avt-- 146 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAAS-- 146 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHHc--
Confidence 9999999998888884 45667876655543222333568986 8999976 566666666 67778876542
Q ss_pred hhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeec
Q 020551 262 YLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG 313 (324)
Q Consensus 262 ~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG 313 (324)
| . +++..+++...+.+|+........+.|+|+|+++|++++|+.-+
T Consensus 147 ---g-~--~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~ 192 (341)
T PLN02776 147 ---G-Q--LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADA 192 (341)
T ss_pred ---C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCcccc
Confidence 2 2 23334445556678988777777788888999999999999763
No 49
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.86 E-value=2.7e-20 Score=175.93 Aligned_cols=149 Identities=23% Similarity=0.227 Sum_probs=114.4
Q ss_pred HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc--CCCC
Q 020551 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYL 174 (324)
Q Consensus 97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n--~p~R 174 (324)
++++++|++++||+.|+...+.+. +.+++... .+.. .+...++++++..++.+++|++||++|+|+|+.| ||+|
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 457899999999999999887544 34444221 1111 1112455666777888999999999999999997 6799
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHH
Q 020551 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (324)
Q Consensus 175 pl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg 254 (324)
|+++|++++++++.++.++.++|+.+++.+++..+.+ .+..++..++||. ++|+++++++++++..++..+..|
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G 157 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAG 157 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888765444 3456777889997 689999989998887666555555
Q ss_pred H
Q 020551 255 Y 255 (324)
Q Consensus 255 ~ 255 (324)
.
T Consensus 158 ~ 158 (295)
T PRK12324 158 G 158 (295)
T ss_pred H
Confidence 4
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.84 E-value=9e-20 Score=182.91 Aligned_cols=190 Identities=22% Similarity=0.238 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc--CC
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KP 172 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n--~p 172 (324)
+.+.++++|++++||+.|+..++.++ +.+.+.. ..+. ..+...++++++..++.+++|++||++|+|+|+.| ++
T Consensus 186 ~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~~--~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~ 261 (479)
T PRK08238 186 PRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGDL--QALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKR 261 (479)
T ss_pred CCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Confidence 34457899999999999999988644 6666532 2222 22223556777888999999999999999999999 57
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252 (324)
Q Consensus 173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~ 252 (324)
+||+++|++|+++++.++.+++++|+.+++.+++..+ +.++..+++.++||. ++||+++++++++++.+++.+.
T Consensus 262 ~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~ 335 (479)
T PRK08238 262 RRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRII 335 (479)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999988887443 333566777889997 6999999999999887776666
Q ss_pred HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCC
Q 020551 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM 305 (324)
Q Consensus 253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~ 305 (324)
.|+.+. + . +.+.|++. +..++.....+.+...|.++++..|.
T Consensus 336 ~G~~a~------~--~--~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 336 AGAAAI------G--V--ALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHh------c--c--CHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 665431 2 1 22223322 22233455678888899988888775
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.79 E-value=8e-20 Score=166.70 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=147.9
Q ss_pred HHHHHHHHhHccchHHHHHH---HHHHHHHHhhc--cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC
Q 020551 98 RKLNAISHVTRYYAQINIIV---SVTSVCFLPVQ--SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~---~~~~g~~lA~~--~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p 172 (324)
.+++.|.+++|.+..+.+.+ +.....++|.. ..+++. .++ +.-++.+++..++|.+||..|+|+|+..++
T Consensus 62 ~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~---mL~--LFG~GAllMRgAGCtINDlwDkdlD~KVeR 136 (353)
T KOG1381|consen 62 KRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIK---MLA--LFGVGALLMRGAGCTINDLWDKDLDAKVER 136 (353)
T ss_pred ccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhH---HHH--HhcccHHHhccCCceehhhhhhhhhhhHhh
Confidence 45899999999886655533 44455555532 222222 111 223578899999999999999999998765
Q ss_pred --CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (324)
Q Consensus 173 --~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~ 250 (324)
.||+++|++|++++..+....+.+|+.+-..+++....++ ..++...+.|+. +||.+++.+++.++.+..-
T Consensus 137 tklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLgltfnwG 209 (353)
T KOG1381|consen 137 TKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLGLTFNWG 209 (353)
T ss_pred hcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHhhhcchh
Confidence 7999999999999999888888888888778887665443 356667788987 8999999988876544433
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII 322 (324)
Q Consensus 251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~ 322 (324)
..+||-+ +-|. . .+...+-+++--..|++..+.++..+|.++|.++|+|+.+.++|+++..|++.
T Consensus 210 AllGw~A-----~~g~-~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g 274 (353)
T KOG1381|consen 210 ALLGWCA-----LKGS-L-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG 274 (353)
T ss_pred hhhcchh-----hcCc-c-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh
Confidence 4455432 2232 1 12122222222236888899999999999999999999999999999888753
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.35 E-value=4.2e-13 Score=125.62 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=129.8
Q ss_pred HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCc
Q 020551 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (324)
Q Consensus 98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rp 175 (324)
..++.|+|+++|.-....+++...|+++|.+.. +++ ++++..++..+..++.|.+||+++.+.|..+++ +||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 467899999999988888888889999986542 333 245667888999999999999999999999876 899
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHH-HHHHHHHHH
Q 020551 176 LASGELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV-ILMGLILQI 253 (324)
Q Consensus 176 l~sG~is~~~a~~~~~~~~~lgl~l-a~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~-i~~g~~~~l 253 (324)
+++|++++..|+.++.+....|..+ ++-.++....++..=.++.+..|+- +||... .|-.+| ++.+++..+
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLM 238 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccc
Confidence 9999999999999988887777654 3446655433332112334567775 898774 444443 344567778
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHH--HHHHHhccCChHHhHHcCCccccee
Q 020551 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF--VNGLLKDLPDVEGDKAFGMQTLCVL 311 (324)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~--~~~~~~di~D~egD~~~G~rTlpv~ 311 (324)
||-+.. |. ..+..+++ ......|.+ ...+..++|| +-.++|.+.+++.
T Consensus 239 GwAAas-----g~--l~~ga~iL-a~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~~ 288 (409)
T KOG1380|consen 239 GWAAAS-----GL--LDPGAMIL-AGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAVT 288 (409)
T ss_pred hhhhhc-----cC--CCccHHHH-HHHHHHhcccchhhhhhhhch--hhhhccEEEEEee
Confidence 875542 21 11223333 333345653 3344555543 3478999988764
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.31 E-value=2.8e-13 Score=121.55 Aligned_cols=212 Identities=14% Similarity=0.062 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccch--hhhhccCC
Q 020551 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKINKP 172 (324)
Q Consensus 95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~--e~D~~n~p 172 (324)
...++.+.|+...||+..-.+..++.+|.++|+.....-++.+.. +.+..++++..|.++|..|.|+|. .+|+....
T Consensus 56 g~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~-~fl~a~avlavh~agnlvntyfdf~kgid~kkad 134 (359)
T KOG4581|consen 56 GTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLAT-FFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD 134 (359)
T ss_pred hHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHH-HHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence 346789999999999999999999999999997543322333322 344556778889999999999997 58887777
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHH---HHHHcHHH---HHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHH
Q 020551 173 YLPLASGELSMGTGIAICAGSALLSLAL---AFLSGSPA---VLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246 (324)
Q Consensus 173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~l---a~~lg~~~---l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~ 246 (324)
+|.+++..+.+.++..++.++..+|... -..+.+.. +.+..+.++-..++|+.+ +.+|+.. +|.+++.+.
T Consensus 135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyia-lgdliili~ 210 (359)
T KOG4581|consen 135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIA-LGDLIILIL 210 (359)
T ss_pred chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEe-ccCEEEEEe
Confidence 9999999999999888877766655332 22333321 111113345566899974 5788877 587777666
Q ss_pred HHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeeccccee
Q 020551 247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 247 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~ 318 (324)
+|...++=.|+. ++ |. ..|.+ +...+...+-+-++.+.|+-||.|.||++|+-|+++.+|+..+.
T Consensus 211 fgpiavlfaf~~-q~---g~-l~~~~--l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ 275 (359)
T KOG4581|consen 211 FGPIAVLFAFAI-QT---GH-LAIFP--LGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASH 275 (359)
T ss_pred echHHHHHHHHH-hc---Cc-eeEEe--ehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHH
Confidence 775333322221 11 22 22211 11112223445667889999999999999999999999987654
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=95.29 E-value=0.55 Score=45.06 Aligned_cols=66 Identities=24% Similarity=0.297 Sum_probs=36.5
Q ss_pred hhhcccchhhhhccCC-CCccccCcCCHHHHHHHHHHHHH---HHHHHHHHHcHH---H--HHHHHHHHHHhhhhccC
Q 020551 157 SLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSAL---LSLALAFLSGSP---A--VLCAVIAWGLTGAAYSV 225 (324)
Q Consensus 157 ~iNd~~D~e~D~~n~p-~Rpl~sG~is~~~a~~~~~~~~~---lgl~la~~lg~~---~--l~l~ll~~~~l~~~Ys~ 225 (324)
.+||+.|.|.|+.+.. .-|+.=|+ +.+..+...+.+ +.++++...|.. + .+..++.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 7899999999998765 44554443 333333322222 222223333321 2 22234567777888997
No 55
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.99 E-value=2.2 Score=40.85 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=24.9
Q ss_pred HHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHHHHH
Q 020551 150 FMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAI 189 (324)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a~~~ 189 (324)
+........||+-|+|+|+.+.++ -++ ++.++.+..+
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l 222 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL 222 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence 455677789999999999988663 333 3334444444
No 56
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.63 E-value=2.3 Score=40.65 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHH
Q 020551 143 KAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAI 189 (324)
Q Consensus 143 l~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~ 189 (324)
+..+.+.+..+..+..|+..|.|+|+.|+++.+.+ ++..+.+..+
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 33455566677788999999999999998754433 3344444444
No 57
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.09 E-value=1.3 Score=42.59 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHHHHHHHHHH
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAICAGSA 194 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a~~~~~~~~ 194 (324)
.+...+........||+.|+|+|+.+.++ -|+ ++.++.+..+...+.
T Consensus 195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~ 242 (317)
T PRK13387 195 SLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF 242 (317)
T ss_pred HHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence 34445566677899999999999988653 333 344455554443333
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=90.62 E-value=2.2 Score=39.94 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
..++.......+||.-|+|.|+.++ +.-|..-|+
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 3345556667899999999999765 455554454
No 59
>PLN02922 prenyltransferase
Probab=89.55 E-value=2 Score=41.36 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHH
Q 020551 148 QIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICA 191 (324)
Q Consensus 148 ~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~ 191 (324)
..+........||+.|+|+|+.+.++...+ ++.++.+..+..
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~ 238 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVR 238 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHH
Confidence 335556778999999999999987643222 333444444433
No 60
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=89.21 E-value=4.9 Score=37.82 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
+++.++.+.+-..+|++.|+|.|+.. .+.-|+.-|+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 45566667778899999999999975 4566666664
No 61
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=89.06 E-value=16 Score=34.62 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccC-CCCccccCcCCHHHHHHHHHHHHHHHHH
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLA 199 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~is~~~a~~~~~~~~~lgl~ 199 (324)
++..+...+...+|++.|+|.|+..+ +.-|. ++.++.+..+..++..++..
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHH
Confidence 34456667778999999999999754 33343 34455555555555444433
No 62
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=89.00 E-value=5.8 Score=37.59 Aligned_cols=44 Identities=11% Similarity=-0.056 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHHHHHHHHHHH
Q 020551 149 IFMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAICAGSAL 195 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a~~~~~~~~~ 195 (324)
.+........||.-|+|+|+.+.++ -++ ++.++.+..+...+..
T Consensus 171 gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~ 215 (285)
T TIGR02235 171 GLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVIS 215 (285)
T ss_pred HHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHH
Confidence 3556678899999999999987653 333 3445555554443333
No 63
>PLN00012 chlorophyll synthetase; Provisional
Probab=88.61 E-value=6.5 Score=38.82 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 148 QIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 148 ~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
.++...+....||+-|+|.|+.. ++.-|+.-|.
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 34555668889999999999865 4566665554
No 64
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=87.62 E-value=8.2 Score=36.33 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhcccchhhhhccCC-CCccccCcCCHHHHHHHHHHH
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGS 193 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~is~~~a~~~~~~~ 193 (324)
...+........||+.|+|.|+.+.. .-|+ ++.++.+..+...+
T Consensus 176 ~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l 220 (293)
T PRK06080 176 PCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAAL 220 (293)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHH
Confidence 34455666778999999999998754 3333 33344444443333
No 65
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=87.59 E-value=3.6 Score=39.04 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHc
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG 205 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg 205 (324)
+..+...+...+||+-|.|.|+.+..+ .++. ++.++.+..+...+.+++.++....+
T Consensus 168 ~~~~~~~a~~ii~~irDie~Dr~~G~~-Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 168 AFFLWGMASHAFGAVQDVVADREAGIA-SIAT-VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHhCcchHhHHHcCCc-cchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446778899999999999987542 2221 45667777776666666655443444
No 66
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=87.44 E-value=7.4 Score=36.61 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
.+..++.+..-...|++.|+|.|+.+. +.-|+.-|.
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 445566667777899999999999764 455655554
No 67
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=87.01 E-value=6.7 Score=36.81 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
.+..++.+..-..+||..|+|.|+..+ +.-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 344556666777899999999997654 566665563
No 68
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=86.10 E-value=10 Score=35.93 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHH
Q 020551 149 IFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGS 193 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~ 193 (324)
.+........||..|+|+|+.+.++... -++.++.+..+...+
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~--v~lG~~~a~~l~~~l 216 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLA--VRLGDARTRMYHQGL 216 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeeh--hhcchHhHHHHHHHH
Confidence 3445667789999999999987653221 134455555544333
No 69
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=84.74 E-value=6.9 Score=37.50 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhcccchhhhhccCC
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINKP 172 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~p 172 (324)
..++...+...+||+.|+|.|+.+..
T Consensus 190 ~~~~~~~~~~l~~di~D~egD~~~Gi 215 (308)
T PRK12887 190 FVLVFTFAIAIFKDIPDMEGDRQYQI 215 (308)
T ss_pred HHHHHHHHHHHHHhccchhhHHHcCC
Confidence 44456667778999999999998754
No 70
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=84.40 E-value=17 Score=34.38 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
.+...+.+.+-..+|++.|+|.|+... +.-|+.-|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 345566677788999999999998654 455554454
No 71
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=84.10 E-value=5.6 Score=37.97 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhcccchhhhhccCC-CCccccC
Q 020551 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASG 179 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG 179 (324)
.+...+....||+.|+|.|+.+.. .-|+.-|
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG 224 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG 224 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcC
Confidence 345567779999999999997643 4454444
No 72
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=83.93 E-value=5.4 Score=38.22 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=21.7
Q ss_pred HHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 151 MNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 151 ~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
...+....||+.|+|.|+.. ++.-|+.-|+
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 34556789999999999876 4455665554
No 73
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=82.98 E-value=16 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
+..++.+..-...||+.|+|.|+.++ +.-|+.-|+
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 45566677788999999999998764 566766665
No 74
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=82.90 E-value=20 Score=33.70 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 144 ~~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
.++..++-+..-...|++.|+|.|+..+ +.-|+.-|.
T Consensus 167 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 167 LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3455666677777899999999999764 556665555
No 75
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=82.58 E-value=4.6 Score=39.14 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccCC-CCccccCc
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~ 180 (324)
+..++...+...+||+.|+|.|+.... .-|+.=|+
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 344566677778999999999997643 44554443
No 76
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=82.34 E-value=7.1 Score=36.64 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=21.8
Q ss_pred HHHHHHhhhhcccchhhhhccCC-CCccccCc
Q 020551 150 FMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (324)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~ 180 (324)
+...+....||+.|+|.|+.+.. .-|+.-|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 34455678999999999998643 45554444
No 77
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=82.32 E-value=6.7 Score=36.59 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
..++.+...+..||+.|+|.|+.+. +.-|+.-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 3455566678899999999998764 455554444
No 78
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=81.34 E-value=13 Score=34.72 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
..++...+-..+||+.|.|.|+.++ +.-|+.-|+
T Consensus 165 ~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 165 LAALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 3445566778999999999999764 455554444
No 79
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=81.02 E-value=6.7 Score=37.23 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
.+..++.+.+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 34445555566678889999999854 4666766665
No 80
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=80.91 E-value=20 Score=33.99 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCcC
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL 181 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~i 181 (324)
.+..++.+.+-..+|++.|+|.|+... +.-|+.-|+-
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 456677778888999999999998754 4555544543
No 81
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=80.37 E-value=22 Score=33.70 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
.+..++.+.+-..+|++.|+|.|+.. .|.-|+.-|.
T Consensus 173 ~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 173 ALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 34556777777899999999999764 4566665554
No 82
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=79.80 E-value=7.3 Score=37.23 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccC
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG 179 (324)
+++.++.+.+-..+|+..|+|.|+... +.-|+.=|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 345566677778999999999998654 45565545
No 83
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=79.37 E-value=14 Score=34.57 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
+..++.+.+-...||+.|+|.|+.+ .+.-|+.-|.
T Consensus 161 ~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 161 LCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 3445555667788999999999965 4566665553
No 84
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=75.67 E-value=11 Score=35.19 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 149 IFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
++...+....||..|+|.|+... +.-|+.-|.
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 44445666889999999999764 556665554
No 85
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=74.77 E-value=55 Score=31.38 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~ 180 (324)
+..++.+..-..++++.|+|.|+.. .|.-|+.-|.
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3455566666777899999999865 4566665555
No 86
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=74.13 E-value=33 Score=32.49 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=23.5
Q ss_pred HHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHH
Q 020551 150 FMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTG 186 (324)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a 186 (324)
+........|+..|+|.|+.+..+ -|+ ++.++.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 444667789999999999987653 222 4445555
No 87
>PRK13592 ubiA prenyltransferase; Provisional
Probab=67.42 E-value=16 Score=34.98 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.6
Q ss_pred HHHHHHHHHhccCChHHhHHc
Q 020551 283 IYAFVNGLLKDLPDVEGDKAF 303 (324)
Q Consensus 283 l~~~~~~~~~di~D~egD~~~ 303 (324)
+.+.+..++||+.|+|-|+..
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN 77 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRL 77 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhc
Confidence 344567899999999999754
No 88
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=65.77 E-value=90 Score=29.61 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhccC-CCCccccC
Q 020551 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (324)
Q Consensus 144 ~~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG 179 (324)
..++.++-..+-.++.++.|+|.|+... +.-|+.=|
T Consensus 164 l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 164 IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 3456667777778999999999999765 33444333
No 89
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=62.14 E-value=81 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHHHhhhhcccchhhhhccC
Q 020551 149 IFMNISLCSLNQICDVEIDKINK 171 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~ 171 (324)
.+........||+.|+|.|+...
T Consensus 156 ~~~~~~~~~~~~~~D~~~D~~~g 178 (257)
T PF01040_consen 156 FLLIFAIMFFNDIRDIEGDRKAG 178 (257)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcC
Confidence 45556677888999999997654
No 90
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=59.17 E-value=40 Score=31.60 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhcccchhhhhcc-CCCCccccC
Q 020551 149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASG 179 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG 179 (324)
++.+.+-...|++.|+|-|+.. .|.-|+.-|
T Consensus 169 ~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G 200 (279)
T PRK12869 169 YLWTPGHIWSLALKYREDYRRAGVPMLPAVVG 200 (279)
T ss_pred HHHHHHHHHHHHHHhHHhHHHcCCeecceeec
Confidence 3444444555777888888654 344455444
No 91
>PRK11383 hypothetical protein; Provisional
Probab=57.16 E-value=1.2e+02 Score=25.81 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHhhhhccCCCCccccc--ccCcchhHHHHHHHHH-HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHH
Q 020551 214 IAWGLTGAAYSVPLPFLRWK--SHTFMAPFTLVILMGL-ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGL 290 (324)
Q Consensus 214 l~~~~l~~~Ys~~lpP~rlK--r~~~l~~l~v~i~~g~-~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~ 290 (324)
+.+++..+.|.. -.|-+ ..+. .+++.++.|.. ...++.+..+ ++..+...+..-....+++.-+-.++..
T Consensus 49 ~lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~iG---LwNA~l~lsEKGfY~~af~lsLFgai~v 121 (145)
T PRK11383 49 VLGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMVG---LWNATLLLSEKGFYGLAFFLSLFGAVAV 121 (145)
T ss_pred HHHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHHH---HhcCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 456666676663 23444 3342 35666666543 3334433332 3333333333333332222112234567
Q ss_pred HhccCChHHh
Q 020551 291 LKDLPDVEGD 300 (324)
Q Consensus 291 ~~di~D~egD 300 (324)
-++.||...+
T Consensus 122 QKn~RD~~~~ 131 (145)
T PRK11383 122 QKNIRDAGIN 131 (145)
T ss_pred Hhhhhhhhhc
Confidence 8999998544
No 92
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=55.73 E-value=1.9e+02 Score=27.56 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
++.++-+..-..+-.+.|+|.|+..+ +.-|+.-|.
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 44555555566677778999998765 456666664
No 93
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=55.29 E-value=1.2e+02 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhccCC
Q 020551 143 KAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (324)
Q Consensus 143 l~~la~~l~~~a~~~iNd~~D~e~D~~n~p 172 (324)
+.+++..+...+-.+++|+.|+|-|+.+.-
T Consensus 171 ~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~ 200 (289)
T COG0382 171 LLLLAAILWTLGYDIIYAIQDIEGDRKAGL 200 (289)
T ss_pred HHHHHHHHHHHHHHHHHhccCccchHhcCC
Confidence 344566777778889999999999998764
No 94
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=54.50 E-value=1e+02 Score=30.68 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhcccchhh
Q 020551 148 QIFMNISLCSLNQICDVEI 166 (324)
Q Consensus 148 ~~l~~~a~~~iNd~~D~e~ 166 (324)
..++...-..+|++++.++
T Consensus 114 ~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 114 LILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3455566678899988664
No 95
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=53.37 E-value=1.8e+02 Score=27.88 Aligned_cols=49 Identities=10% Similarity=-0.051 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHH
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSL 198 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl 198 (324)
+.=++|.++-+..|+.|-+. .++.+|-+........+...+-.++..++
T Consensus 71 aiEliH~asLiHDDI~D~s~---~RRg~pt~~~~~G~~~Ail~GD~L~~~a~ 119 (319)
T TIGR02748 71 ALELIHMASLVHDDVIDDAD---LRRGRPTIKSKWGNRIAMYTGDYLFAKSL 119 (319)
T ss_pred HHHHHHHHHHHhccccCCCC---CCCCCcCHHHHhChHHHHHHHHHHHHHHH
Confidence 44589999999999977653 33456655555556666555444444443
No 96
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=49.35 E-value=72 Score=26.37 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=24.7
Q ss_pred hhhccCCCCccccCcCCHHHHHHHHHHHHHH----HHHHHHHHcHH
Q 020551 166 IDKINKPYLPLASGELSMGTGIAICAGSALL----SLALAFLSGSP 207 (324)
Q Consensus 166 ~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~l----gl~la~~lg~~ 207 (324)
-|++|+. |.+=+.+|..|.+..+.+..++ |+.+++..|++
T Consensus 8 p~RLN~e--PvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNRE--PVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcCC--CCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777753 5666678888987766554444 34445555655
No 97
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=49.28 E-value=2.5e+02 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 148 QIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 148 ~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
.++...+-.++.+..|+|.|+... +.-|+.-|.
T Consensus 181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 334444455777799999999765 344544443
No 98
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=48.53 E-value=17 Score=34.63 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.7
Q ss_pred HHHHHHHHhccCChHHhHHc
Q 020551 284 YAFVNGLLKDLPDVEGDKAF 303 (324)
Q Consensus 284 ~~~~~~~~~di~D~egD~~~ 303 (324)
...+...+||+-|+|.|+++
T Consensus 58 ~~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 58 ASSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHHhHHHHHhhccC
Confidence 34566799999999999986
No 99
>PLN02878 homogentisate phytyltransferase
Probab=47.82 E-value=65 Score=30.62 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHHHHhhhhcccchhhhhccCC-CCccccCcCCHHHHHHHHH
Q 020551 150 FMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICA 191 (324)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~is~~~a~~~~~ 191 (324)
+.......+||+-|.|-|+.... .-|+. +.++.+..+..
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~---lG~~~~~~i~~ 206 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVR---LGQKRVFWLCV 206 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechh---hChHHHHHHHH
Confidence 34445679999999999997653 44443 33444444443
No 100
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=47.23 E-value=1.8e+02 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=26.0
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHH--HHHHHhhhhccC
Q 020551 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAV--IAWGLTGAAYSV 225 (324)
Q Consensus 178 sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~l--l~~~~l~~~Ys~ 225 (324)
-|-.||...+-+.+...+.-+.++...+.|.+.++. ++..+.++.|.+
T Consensus 81 ~GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vfEy 130 (137)
T PF12270_consen 81 LGFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVFEY 130 (137)
T ss_pred cCcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 466888887777554433333334445556544432 233455666665
No 101
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=46.35 E-value=1e+02 Score=28.82 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=13.1
Q ss_pred hcccchhhhhccC-CCCccccCc
Q 020551 159 NQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 159 Nd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
+.+.|+|.|+.++ +.-|+.-|+
T Consensus 178 ~a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 178 LALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHHhhhhHHHCCCccCCcccCH
Confidence 3467888887543 445554444
No 102
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=43.71 E-value=2.9e+02 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
+..++.+..-...|.+.|+|-|+..+ +.-|+.-|.
T Consensus 174 ~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 174 LIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH
Confidence 34455555555667788888886433 455554443
No 103
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=42.02 E-value=3.1e+02 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=15.1
Q ss_pred HHhhhhccCCCCcc-ccccc-CcchhHHHHHHH
Q 020551 217 GLTGAAYSVPLPFL-RWKSH-TFMAPFTLVILM 247 (324)
Q Consensus 217 ~~l~~~Ys~~lpP~-rlKr~-~~l~~l~v~i~~ 247 (324)
+....+|.. +|.. +.|.+ -..|.++.++.|
T Consensus 202 ~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai~~ 233 (303)
T COG1295 202 LGFFLLYRF-LPNVRVLKWRDVLPGALLAAILF 233 (303)
T ss_pred HHHHHHHHH-cCCccccchHHhhhhHHHHHHHH
Confidence 344566766 3665 34433 344555554443
No 104
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.62 E-value=1.2e+02 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=21.7
Q ss_pred hhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHH
Q 020551 166 IDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (324)
Q Consensus 166 ~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~l 200 (324)
-|++|+. |.+-+.+|..|.+..+.+..++++++
T Consensus 5 p~RLN~e--PvV~rGlT~~El~~~~~~~~~~gl~~ 37 (111)
T TIGR03750 5 PDRLNRE--PVVFRGLTADELGVAAGVGLAAGLVL 37 (111)
T ss_pred chhhcCC--CceecccCHHHHHHHHHHHHHHHHHH
Confidence 4777753 56667788899888766555554433
No 105
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=41.24 E-value=3.2e+02 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551 149 IFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (324)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~ 180 (324)
++-+..-..+-...|+|.|+... +.-|+.-|.
T Consensus 176 ~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~ 208 (289)
T PLN02809 176 VCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 208 (289)
T ss_pred HHHHHHHHHHHHHhchhhHHhCCCcccchhhcH
Confidence 33344444666667999998765 455555454
No 106
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=40.79 E-value=1.6e+02 Score=26.98 Aligned_cols=53 Identities=13% Similarity=0.027 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHH
Q 020551 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (324)
Q Consensus 145 ~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~l 200 (324)
..++=++|.+.-+..|+.|-+. .+|.+|-...+.....+...+-.++..++-.
T Consensus 39 a~avEliH~asLIhDDI~D~s~---~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~ 91 (260)
T PF00348_consen 39 AAAVELIHAASLIHDDIIDNSD---LRRGKPTVHKKFGNAIAILAGDYLLALAFEL 91 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS---EETTEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcccc---cCCCCccccccccccchhhhchHHHHHHHHH
Confidence 3456689999999999966543 3445554333444555555554455544433
No 107
>PRK13595 ubiA prenyltransferase; Provisional
Probab=39.84 E-value=79 Score=30.20 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=17.0
Q ss_pred HHHHHHHhccCChHHhHHcCCc
Q 020551 285 AFVNGLLKDLPDVEGDKAFGMQ 306 (324)
Q Consensus 285 ~~~~~~~~di~D~egD~~~G~r 306 (324)
......+||+-|+|.|++.-++
T Consensus 60 n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 60 NLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHhhhhhhhhccCCCC
Confidence 3456789999999999865443
No 108
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=36.75 E-value=59 Score=26.99 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.1
Q ss_pred cccccccccCCCCCcccc-ccccc
Q 020551 32 QRHKSSIKCSSQSSFSFP-NQNKI 54 (324)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~-~~~~~ 54 (324)
+-+|.+|-|.--||||-+ ++++.
T Consensus 31 sl~~~~iACTKTssFs~~~~~~~~ 54 (134)
T PF03369_consen 31 SLAKFTIACTKTSSFSGASARRRK 54 (134)
T ss_pred HhhcCceEEecccccccccccccc
Confidence 568999999999999888 65555
No 109
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=34.75 E-value=13 Score=33.30 Aligned_cols=30 Identities=40% Similarity=0.399 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCChHHhH----------HcCCcccceeec
Q 020551 284 YAFVNGLLKDLPDVEGDK----------AFGMQTLCVLLG 313 (324)
Q Consensus 284 ~~~~~~~~~di~D~egD~----------~~G~rTlpv~lG 313 (324)
+..+..+.+|++|+.+|. +.|+.|+|..+.
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 445678999999998887 899999998765
No 110
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=30.57 E-value=2.5e+02 Score=21.63 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc
Q 020551 132 QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (324)
Q Consensus 132 ~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n 170 (324)
..+..++.++....++..+...++..-|..+|...|++-
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 356656666666667777777888899999998887753
No 111
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=29.52 E-value=67 Score=22.05 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHhhhhcccchhhhh
Q 020551 150 FMNISLCSLNQICDVEIDK 168 (324)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~ 168 (324)
+...+..++|.+.|.++|=
T Consensus 16 Cl~lyl~ald~~CDQg~~F 34 (47)
T PRK10299 16 CLLLWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 4447888999999998763
No 112
>PLN02776 prenyltransferase
Probab=28.88 E-value=3.2e+02 Score=26.68 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=14.5
Q ss_pred CCCCccccC--cCCHHHHHHHHHHHHHHHHHH
Q 020551 171 KPYLPLASG--ELSMGTGIAICAGSALLSLAL 200 (324)
Q Consensus 171 ~p~Rpl~sG--~is~~~a~~~~~~~~~lgl~l 200 (324)
-|.-|++.+ +-+..+.......+..++++.
T Consensus 184 ~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~ 215 (341)
T PLN02776 184 YRMLSLADATGRRTALVALRNCLYLAPLGFLA 215 (341)
T ss_pred CcccCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 355566553 334444444444555555443
No 113
>PLN02890 geranyl diphosphate synthase
Probab=27.32 E-value=6.5e+02 Score=25.32 Aligned_cols=49 Identities=2% Similarity=-0.159 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHH
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lg 197 (324)
.++=++|.+.-+.+|+.|-.. .++.+|-.........+...+=.++..+
T Consensus 168 aavEliH~ASLVHDDIiD~s~---~RRG~pt~~~~~G~~~AIlaGD~Lla~A 216 (422)
T PLN02890 168 EITEMIHVASLLHDDVLDDAD---TRRGVGSLNVVMGNKLSVLAGDFLLSRA 216 (422)
T ss_pred HHHHHHHHHHHHHcccccCCC---CcCCCcChhhhcChHHHHHHHHHHHHHH
Confidence 344589999999999977553 4556666666666666666543333333
No 114
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=26.30 E-value=5.8e+02 Score=24.40 Aligned_cols=49 Identities=2% Similarity=-0.107 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHH
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lg 197 (324)
.++=++|.+.-+..|+.|-.. .++.+|-+........+...+=.++..+
T Consensus 74 ~avEliH~asLiHDDiiD~s~---~RRG~pt~h~~~G~~~Ail~GD~l~~~a 122 (322)
T TIGR02749 74 EITEMIHTASLVHDDVIDESD---TRRGIETVHSLFGTRVAVLAGDFLFAQA 122 (322)
T ss_pred HHHHHHHHHHHHHcccccCcc---ccCCCccHHHHhCcHHHHHHHHHHHHHH
Confidence 345689999999999977543 3445665555555556655543343333
No 115
>PRK08238 hypothetical protein; Validated
Probab=26.03 E-value=64 Score=32.95 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCChHHhHHcC
Q 020551 283 IYAFVNGLLKDLPDVEGDKAFG 304 (324)
Q Consensus 283 l~~~~~~~~~di~D~egD~~~G 304 (324)
+...+..++||+-|+|.|+++-
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~ 258 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHP 258 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCC
Confidence 3445678999999999999974
No 116
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=25.91 E-value=1.4e+02 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhc
Q 020551 141 VLKAVVAQIFMNISLCSLNQICDVEIDKI 169 (324)
Q Consensus 141 ~ll~~la~~l~~~a~~~iNd~~D~e~D~~ 169 (324)
..++..+++++..+.-.-+|+++.-+|.-
T Consensus 355 taLstaaGL~l~iasavsHDiY~~vik~~ 383 (529)
T COG4147 355 TALSTAAGLLLVIASAVSHDLYAMVIKKG 383 (529)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHhCCC
Confidence 34566777888888889999999877664
No 117
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.34 E-value=4.9e+02 Score=23.84 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=20.2
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551 231 RWKSHTFMAPFTLVILMGLILQIPYFIH 258 (324)
Q Consensus 231 rlKr~~~l~~l~v~i~~g~~~~lg~~~~ 258 (324)
|-+|+..+..+.++..|+++..+|++..
T Consensus 99 ~~RkraVl~Dl~~SalwtflwfvGFc~l 126 (233)
T KOG4016|consen 99 KDRKRAVLADLGVSALWAFLWFVGFCFL 126 (233)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777788888777887777776543
No 118
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=24.27 E-value=4.2e+02 Score=22.54 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=12.2
Q ss_pred CccccCcCCHHHHHH
Q 020551 174 LPLASGELSMGTGIA 188 (324)
Q Consensus 174 Rpl~sG~is~~~a~~ 188 (324)
-|+++|+++.++...
T Consensus 59 vPiAtGki~~~~l~~ 73 (140)
T PF04284_consen 59 VPIATGKIGFKDLLN 73 (140)
T ss_pred ccccCCCcCHHHHHH
Confidence 589999999888643
No 119
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=23.16 E-value=4.4e+02 Score=25.09 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=11.8
Q ss_pred HHhhhhcccchhhhhccCCCCccccCc
Q 020551 154 SLCSLNQICDVEIDKINKPYLPLASGE 180 (324)
Q Consensus 154 a~~~iNd~~D~e~D~~n~p~Rpl~sG~ 180 (324)
....++|.-|++ +..-|.-|+..|.
T Consensus 188 ~~~ai~~~~Dy~--~aG~~~lpv~~G~ 212 (306)
T PRK13362 188 YAIAIFRFNDYA--AAGIPVLPVARGI 212 (306)
T ss_pred HHHHHHhHhhHH--HCCCeeeceecCh
Confidence 334455544443 2333555665554
No 120
>PRK10581 geranyltranstransferase; Provisional
Probab=20.87 E-value=27 Score=33.30 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.+.
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~ 260 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQAR 260 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHH
Confidence 4566789999999754 5778999999999877654
Done!