Query 020551
Match_columns 324
No_of_seqs 213 out of 1377
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 34.1 8 0.00027 35.5 -0.2 35 284-318 208-253 (297)
2 3oyr_A Trans-isoprenyl diphosp 32.8 3E+02 0.01 25.4 10.6 49 147-198 93-141 (345)
3 3lsn_A Geranyltranstransferase 27.1 7.1 0.00024 36.0 -1.9 35 284-318 215-260 (304)
4 3lom_A Geranyltranstransferase 26.4 7.3 0.00025 36.1 -1.9 35 284-318 222-267 (313)
5 3ts7_A Geranyltranstransferase 25.1 7 0.00024 36.4 -2.3 35 284-318 221-266 (324)
6 3p8r_A Geranyltranstransferase 21.5 9.3 0.00032 35.1 -2.2 35 284-318 221-266 (302)
7 3llw_A Geranyltranstransferase 20.8 12 0.0004 34.7 -1.7 35 284-318 222-265 (311)
8 4f62_A Geranyltranstransferase 20.0 11 0.00039 34.9 -2.0 36 284-319 214-260 (317)
9 3p8l_A Geranyltranstransferase 19.1 11 0.00039 34.6 -2.2 35 284-318 218-263 (302)
10 2h8o_A Geranyltranstransferase 17.8 12 0.00043 34.8 -2.2 35 284-318 254-299 (335)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=34.14 E-value=8 Score=35.51 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.+.
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~ 253 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAK 253 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHH
Confidence 4566789999999866 6678999999999988764
No 2
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=32.84 E-value=3e+02 Score=25.39 Aligned_cols=49 Identities=8% Similarity=-0.111 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHH
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSL 198 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl 198 (324)
+.=++|.+.-+..|+.|-+. .+|.+|-..-......+...+=.++..++
T Consensus 93 aiEliH~asLiHDDi~D~s~---~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~ 141 (345)
T 3oyr_A 93 AVEFIHTATLLHDDVVDGSQ---LRRGKVAAHLIWGGAQSVLVGDFLFARAF 141 (345)
T ss_dssp HHHHHHHHHHHTTTTC------------CCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccCCCC---CCCCCccHHHhhCHHHHHHHHHHHHHHHH
Confidence 44589999999999966443 24455655556666666665544444444
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=27.11 E-value=7.1 Score=36.01 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=23.5
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.+.
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~ 260 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAK 260 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHH
Confidence 4566788899998866 6678999999999988764
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=26.43 E-value=7.3 Score=36.09 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.++
T Consensus 222 lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~ 267 (313)
T 3lom_A 222 IGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLE 267 (313)
T ss_dssp HHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHH
Confidence 4456678888888765 6788999999999987764
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=25.06 E-value=7 Score=36.44 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.++
T Consensus 221 lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~ 266 (324)
T 3ts7_A 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAK 266 (324)
T ss_dssp HHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHH
Confidence 4456678888888754 6788999999999988765
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=21.47 E-value=9.3 Score=35.15 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.++
T Consensus 221 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~ 266 (302)
T 3p8r_A 221 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQ 266 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHH
Confidence 3455677777777654 6788999999999987765
No 7
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=20.81 E-value=12 Score=34.67 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=25.7
Q ss_pred HHHHHHHHhccCChHHhH---------HcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEGDK---------AFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~egD~---------~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+|. +.|+.|+|+++|.+++.
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~ 265 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERAN 265 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHH
Confidence 456678899999998775 57999999999987654
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=19.99 E-value=11 Score=34.88 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeecccceee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVSI 319 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~~ 319 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.++.
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~ 260 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKA 260 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHH
Confidence 4456678888888754 67789999999999887653
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=19.13 E-value=11 Score=34.61 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred HHHHHHHHhccCChH-----------HhHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~e-----------gD~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+. .|.+.|+.|+|+++|.+.+.
T Consensus 218 lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~ 263 (302)
T 3p8l_A 218 YGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAK 263 (302)
T ss_dssp HHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHH
Confidence 445667788887774 57888999999999988765
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=17.85 E-value=12 Score=34.83 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=22.3
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeeccccee
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVS 318 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a~ 318 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+++|.+.+.
T Consensus 254 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~ 299 (335)
T 2h8o_A 254 IGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAR 299 (335)
T ss_dssp HHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHH
Confidence 4456678888888754 6678999999999976654
Done!