Query 020551
Match_columns 324
No_of_seqs 213 out of 1377
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 04:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020551.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020551hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 75.4 1.2 9.1E-05 38.4 4.5 53 146-199 68-120 (290)
2 d1v4ea_ a.128.1.1 (A:) Octopre 21.0 1.1E+02 0.0078 25.1 7.1 49 147-198 61-109 (280)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 19.9 1.4E+02 0.01 22.9 7.3 8 154-161 110-117 (199)
4 d1rqja_ a.128.1.1 (A:) Farnesy 18.0 7.2 0.00052 33.3 -1.6 34 284-317 215-259 (299)
5 d1gl0i_ g.4.1.1 (I:) Protease 11.8 30 0.0022 19.1 0.5 8 18-25 3-10 (32)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 11.7 1.1E+02 0.0077 16.7 2.9 9 203-211 13-21 (34)
7 d2dlqa1 g.37.1.1 (A:93-118) GL 10.5 39 0.0029 17.5 0.7 8 37-44 2-9 (26)
8 d1wo9a_ g.4.1.1 (A:) Protease 10.0 37 0.0027 19.2 0.5 8 18-25 5-12 (35)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 9.7 13 0.00097 32.2 -2.4 33 284-316 230-272 (348)
10 d1iwga8 f.35.1.1 (A:513-566,A: 9.2 2.8E+02 0.021 21.4 6.2 17 147-163 121-137 (222)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=75.38 E-value=1.2 Score=38.37 Aligned_cols=53 Identities=8% Similarity=-0.074 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHH
Q 020551 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (324)
Q Consensus 146 la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~ 199 (324)
.+.=++|.+.-+..|+.|.|.|.. ++.+|-.........+...+-.+...++-
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 355689999999999998887653 44556555555566665555444444443
No 2
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=20.98 E-value=1.1e+02 Score=25.10 Aligned_cols=49 Identities=6% Similarity=-0.078 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHH
Q 020551 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSL 198 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl 198 (324)
+.=++|.+.-+..|+.|-+ . -+|.+|-.........+...+-.++..++
T Consensus 61 aiEliH~asLIhDDi~D~s--~-~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 61 ALELVHLASLLHDDVIDGA--R-FRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTC--S-EETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhhc--c-cccccchhhhccchhhhhhhHHHHHHhhh
Confidence 4568899999999997633 2 24455555445556666555544444444
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=19.91 E-value=1.4e+02 Score=22.91 Aligned_cols=8 Identities=0% Similarity=0.393 Sum_probs=3.1
Q ss_pred HHhhhhcc
Q 020551 154 SLCSLNQI 161 (324)
Q Consensus 154 a~~~iNd~ 161 (324)
+.+...++
T Consensus 110 ~i~i~~~~ 117 (199)
T d1iwga7 110 AIVVVENV 117 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344333
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=17.99 E-value=7.2 Score=33.34 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChHH-----------hHHcCCcccceeecccce
Q 020551 284 YAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKV 317 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg-----------D~~~G~rTlpv~lG~k~a 317 (324)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.+
T Consensus 215 lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a 259 (299)
T d1rqja_ 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQA 259 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHH
No 5
>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=11.76 E-value=30 Score=19.12 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=6.0
Q ss_pred CCCCcccc
Q 020551 18 SPGCSRKF 25 (324)
Q Consensus 18 ~~~~~~~~ 25 (324)
+|||.||+
T Consensus 3 tpg~tkk~ 10 (32)
T d1gl0i_ 3 TPGQVKQQ 10 (32)
T ss_dssp CTTCEEEC
T ss_pred CCCccccc
Confidence 68888775
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=11.71 E-value=1.1e+02 Score=16.70 Aligned_cols=9 Identities=22% Similarity=-0.101 Sum_probs=3.4
Q ss_pred HHcHHHHHH
Q 020551 203 LSGSPAVLC 211 (324)
Q Consensus 203 ~lg~~~l~l 211 (324)
--|+..+.+
T Consensus 13 ekgwlafsl 21 (34)
T d1xmeb2 13 EKGWLAFSL 21 (34)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 334433333
No 7
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.45 E-value=39 Score=17.50 Aligned_cols=8 Identities=63% Similarity=0.775 Sum_probs=5.3
Q ss_pred ccccCCCC
Q 020551 37 SIKCSSQS 44 (324)
Q Consensus 37 ~~~~~~~~ 44 (324)
|.|||+-|
T Consensus 2 pykcsscs 9 (26)
T d2dlqa1 2 PYKCSSCS 9 (26)
T ss_dssp SEECSSSC
T ss_pred CCcccHHH
Confidence 56777665
No 8
>d1wo9a_ g.4.1.1 (A:) Protease inhibitor SGTI {Desert locust (Schistocerca gregaria) [TaxId: 7010]}
Probab=10.04 E-value=37 Score=19.17 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=6.2
Q ss_pred CCCCcccc
Q 020551 18 SPGCSRKF 25 (324)
Q Consensus 18 ~~~~~~~~ 25 (324)
+|||.||+
T Consensus 5 TPG~tKk~ 12 (35)
T d1wo9a_ 5 TPGQTKKQ 12 (35)
T ss_dssp CTTCEEEE
T ss_pred CCCccccc
Confidence 68888775
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.70 E-value=13 Score=32.22 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=24.9
Q ss_pred HHHHHHHHhccCChHH----------hHHcCCcccceeecccc
Q 020551 284 YAFVNGLLKDLPDVEG----------DKAFGMQTLCVLLGKEK 316 (324)
Q Consensus 284 ~~~~~~~~~di~D~eg----------D~~~G~rTlpv~lG~k~ 316 (324)
+..+..+.+|+.|+.+ |.+.|++|+|+.+..+.
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 4456678888887754 77889999999886543
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.19 E-value=2.8e+02 Score=21.35 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhcccc
Q 020551 147 AQIFMNISLCSLNQICD 163 (324)
Q Consensus 147 a~~l~~~a~~~iNd~~D 163 (324)
.+.....+...++++.+
T Consensus 121 ~Gi~v~~~i~~~~~~~~ 137 (222)
T d1iwga8 121 IGLSAKNAILIVEFAKD 137 (222)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhcc
Confidence 33444444555554443
Done!