Query 020552
Match_columns 324
No_of_seqs 282 out of 1665
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 2.8E-31 6E-36 222.2 15.9 137 2-194 1-138 (138)
2 KOG1717 Dual specificity phosp 100.0 7.2E-31 1.6E-35 235.0 11.2 142 1-196 171-313 (343)
3 KOG1718 Dual specificity phosp 100.0 9.1E-30 2E-34 214.2 12.9 139 3-197 18-157 (198)
4 KOG1716 Dual specificity phosp 100.0 8.3E-29 1.8E-33 231.9 15.1 148 2-202 75-223 (285)
5 cd00127 DSPc Dual specificity 100.0 5.4E-28 1.2E-32 201.8 15.5 137 2-192 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 3.6E-28 7.8E-33 201.8 12.8 131 9-193 1-132 (133)
7 PRK12361 hypothetical protein; 99.9 6.5E-24 1.4E-28 215.5 15.5 141 2-195 95-237 (547)
8 KOG1719 Dual specificity phosp 99.8 5E-20 1.1E-24 153.4 10.6 142 4-195 27-170 (183)
9 PTZ00242 protein tyrosine phos 99.8 6.5E-19 1.4E-23 152.5 14.2 94 100-195 60-158 (166)
10 PTZ00393 protein tyrosine phos 99.8 1.1E-18 2.3E-23 157.2 15.5 94 100-196 136-230 (241)
11 COG2453 CDC14 Predicted protei 99.6 5.1E-15 1.1E-19 129.8 11.1 95 98-195 69-165 (180)
12 KOG1720 Protein tyrosine phosp 99.6 2.2E-14 4.8E-19 125.6 14.0 95 98-193 112-206 (225)
13 PF05706 CDKN3: Cyclin-depende 99.4 7.3E-13 1.6E-17 113.2 8.6 106 17-168 61-168 (168)
14 PF03162 Y_phosphatase2: Tyros 99.4 2E-12 4.2E-17 111.8 9.8 139 3-194 8-149 (164)
15 TIGR01244 conserved hypothetic 99.3 1.8E-11 4E-16 102.4 12.4 127 3-179 3-129 (135)
16 KOG2836 Protein tyrosine phosp 99.3 4.3E-11 9.3E-16 98.0 10.9 56 136-193 99-154 (173)
17 smart00012 PTPc_DSPc Protein t 99.1 1.4E-09 3.1E-14 85.3 11.4 82 108-189 9-100 (105)
18 smart00404 PTPc_motif Protein 99.1 1.4E-09 3.1E-14 85.3 11.4 82 108-189 9-100 (105)
19 COG5350 Predicted protein tyro 99.1 1.1E-09 2.5E-14 91.5 10.3 78 115-195 74-152 (172)
20 PF04273 DUF442: Putative phos 99.1 6.9E-10 1.5E-14 89.6 8.4 102 3-153 3-104 (110)
21 cd00047 PTPc Protein tyrosine 98.8 3.1E-08 6.7E-13 89.7 11.1 91 99-189 127-226 (231)
22 PF13350 Y_phosphatase3: Tyros 98.8 3.4E-08 7.3E-13 85.1 10.2 36 135-171 125-160 (164)
23 PLN02727 NAD kinase 98.7 4.5E-08 9.8E-13 102.4 10.7 112 8-166 262-373 (986)
24 smart00194 PTPc Protein tyrosi 98.7 8E-08 1.7E-12 88.6 10.3 70 120-189 177-253 (258)
25 COG3453 Uncharacterized protei 98.6 4.8E-07 1E-11 73.0 10.8 120 3-174 4-125 (130)
26 PRK15375 pathogenicity island 98.4 2.4E-06 5.1E-11 84.7 10.7 95 101-195 422-529 (535)
27 PHA02742 protein tyrosine phos 98.3 5.3E-06 1.2E-10 78.6 10.2 52 135-186 230-286 (303)
28 PF00102 Y_phosphatase: Protei 98.2 6.6E-06 1.4E-10 73.8 9.9 68 123-190 157-231 (235)
29 KOG1572 Predicted protein tyro 98.2 7E-06 1.5E-10 73.8 9.6 119 3-175 61-188 (249)
30 PF14566 PTPlike_phytase: Inos 98.2 2.1E-06 4.4E-11 73.1 5.1 61 97-158 88-148 (149)
31 PHA02740 protein tyrosine phos 98.2 9.4E-06 2E-10 76.8 10.1 53 135-187 222-279 (298)
32 PHA02746 protein tyrosine phos 98.2 9.8E-06 2.1E-10 77.5 9.8 54 135-188 248-306 (323)
33 PHA02747 protein tyrosine phos 98.1 1.9E-05 4.1E-10 75.2 10.5 54 135-188 230-288 (312)
34 KOG2283 Clathrin coat dissocia 98.1 1.3E-05 2.9E-10 79.1 9.1 88 106-194 77-173 (434)
35 PF04179 Init_tRNA_PT: Initiat 98.1 3.4E-05 7.5E-10 76.6 12.0 87 105-191 344-449 (451)
36 PHA02738 hypothetical protein; 98.0 3.8E-05 8.2E-10 73.4 10.5 53 135-187 228-285 (320)
37 COG2365 Protein tyrosine/serin 97.8 0.00013 2.8E-09 67.3 9.0 57 134-190 136-192 (249)
38 KOG0792 Protein tyrosine phosp 97.7 0.00013 2.8E-09 77.3 9.1 78 111-188 1038-1122(1144)
39 COG5599 PTP2 Protein tyrosine 97.7 0.00011 2.4E-09 67.3 6.5 84 101-188 184-286 (302)
40 KOG0790 Protein tyrosine phosp 97.6 7.8E-05 1.7E-09 72.4 5.7 56 133-188 450-513 (600)
41 KOG2386 mRNA capping enzyme, g 97.5 0.00025 5.4E-09 68.8 7.5 74 122-195 111-185 (393)
42 KOG0791 Protein tyrosine phosp 97.0 0.0022 4.8E-08 61.2 7.6 56 134-189 287-347 (374)
43 KOG0789 Protein tyrosine phosp 97.0 0.0032 7E-08 61.7 8.6 52 134-185 299-356 (415)
44 KOG4228 Protein tyrosine phosp 94.6 0.06 1.3E-06 58.2 5.8 72 113-184 704-785 (1087)
45 PF14671 DSPn: Dual specificit 94.0 0.2 4.3E-06 42.2 6.7 66 110-176 39-112 (141)
46 KOG4228 Protein tyrosine phosp 92.9 0.18 4E-06 54.6 5.9 51 134-184 1018-1073(1087)
47 KOG0793 Protein tyrosine phosp 92.9 0.25 5.4E-06 51.2 6.5 62 122-183 910-982 (1004)
48 KOG4471 Phosphatidylinositol 3 92.8 0.17 3.7E-06 51.4 5.2 32 127-158 365-399 (717)
49 cd01518 RHOD_YceA Member of th 83.7 5.6 0.00012 30.6 7.0 26 135-163 62-87 (101)
50 PF06602 Myotub-related: Myotu 83.4 2.6 5.7E-05 40.9 6.0 20 133-152 229-249 (353)
51 KOG1089 Myotubularin-related p 83.3 2.3 5E-05 43.5 5.7 33 126-158 334-369 (573)
52 PRK01415 hypothetical protein; 77.0 4.7 0.0001 37.2 5.2 27 134-163 171-197 (247)
53 PF10122 Mu-like_Com: Mu-like 67.5 1.6 3.4E-05 30.1 -0.3 18 255-272 4-21 (51)
54 PF03226 Yippee-Mis18: Yippee 66.7 1.9 4.2E-05 33.5 0.1 19 255-273 2-20 (96)
55 smart00400 ZnF_CHCC zinc finge 58.3 12 0.00026 25.8 2.9 32 138-171 23-54 (55)
56 PRK00142 putative rhodanese-re 57.4 17 0.00037 34.7 4.7 44 135-193 172-215 (314)
57 PF03861 ANTAR: ANTAR domain; 57.3 17 0.00036 25.3 3.5 26 149-174 15-40 (56)
58 COG0607 PspE Rhodanese-related 57.1 12 0.00026 28.7 3.1 23 135-159 62-84 (110)
59 PLN02160 thiosulfate sulfurtra 57.0 21 0.00045 29.5 4.7 26 135-163 82-107 (136)
60 cd01533 4RHOD_Repeat_2 Member 55.4 28 0.00061 27.0 5.0 25 135-162 67-91 (109)
61 PF03668 ATP_bind_2: P-loop AT 52.9 27 0.00058 32.9 5.1 17 136-152 244-260 (284)
62 PRK05416 glmZ(sRNA)-inactivati 52.3 26 0.00057 33.0 5.0 33 120-152 223-263 (288)
63 COG1660 Predicted P-loop-conta 49.9 17 0.00036 34.0 3.2 17 136-152 245-261 (286)
64 PF00581 Rhodanese: Rhodanese- 48.9 82 0.0018 23.8 6.7 58 105-163 34-98 (113)
65 PF00096 zf-C2H2: Zinc finger, 48.3 3 6.5E-05 23.1 -1.3 19 256-274 1-19 (23)
66 KOG3399 Predicted Yippee-type 48.0 7.2 0.00016 31.9 0.4 24 253-276 13-36 (122)
67 cd01523 RHOD_Lact_B Member of 47.7 29 0.00063 26.4 3.9 26 135-163 62-87 (100)
68 cd01532 4RHOD_Repeat_1 Member 47.6 29 0.00062 26.2 3.8 28 135-163 51-78 (92)
69 cd01448 TST_Repeat_1 Thiosulfa 43.5 40 0.00088 26.6 4.2 26 136-163 81-106 (122)
70 PF04343 DUF488: Protein of un 42.6 1.1E+02 0.0024 24.4 6.8 16 21-36 7-22 (122)
71 cd01528 RHOD_2 Member of the R 41.8 66 0.0014 24.4 5.1 26 135-163 59-84 (101)
72 COG2888 Predicted Zn-ribbon RN 41.4 7.2 0.00016 27.8 -0.4 12 253-264 36-47 (61)
73 PF01807 zf-CHC2: CHC2 zinc fi 40.5 30 0.00065 26.9 2.9 36 138-175 54-89 (97)
74 cd01520 RHOD_YbbB Member of th 39.8 61 0.0013 26.1 4.8 29 132-162 83-112 (128)
75 PF09082 DUF1922: Domain of un 39.6 13 0.00028 27.3 0.6 20 255-275 3-22 (68)
76 TIGR03642 cas_csx13 CRISPR-ass 39.5 1.4E+02 0.003 24.6 6.8 61 101-161 53-116 (124)
77 cd05567 PTS_IIB_mannitol PTS_I 37.3 39 0.00084 25.4 3.0 17 136-153 2-18 (87)
78 PF02673 BacA: Bacitracin resi 36.9 34 0.00073 31.8 3.1 28 142-171 159-186 (259)
79 cd01534 4RHOD_Repeat_3 Member 36.8 41 0.00089 25.3 3.2 26 135-163 57-82 (95)
80 COG4416 Com Mu-like prophage p 36.3 6.8 0.00015 27.3 -1.2 17 255-271 4-20 (60)
81 TIGR03865 PQQ_CXXCW PQQ-depend 35.5 43 0.00094 28.5 3.4 27 135-163 117-143 (162)
82 TIGR00753 undec_PP_bacA undeca 34.0 39 0.00084 31.3 3.0 26 143-170 160-185 (255)
83 PRK12554 undecaprenyl pyrophos 33.9 38 0.00083 31.7 3.0 26 143-170 166-191 (276)
84 PF13912 zf-C2H2_6: C2H2-type 33.7 7.3 0.00016 22.4 -1.2 21 255-275 1-21 (27)
85 COG3091 SprT Zn-dependent meta 33.4 19 0.00041 30.6 0.8 14 253-266 138-151 (156)
86 COG1054 Predicted sulfurtransf 32.1 2.2E+02 0.0048 27.1 7.7 37 120-158 155-194 (308)
87 PRK00281 undecaprenyl pyrophos 31.8 44 0.00095 31.2 3.0 26 143-170 164-189 (268)
88 PF13344 Hydrolase_6: Haloacid 31.6 2E+02 0.0044 22.2 6.4 44 121-165 16-59 (101)
89 cd01522 RHOD_1 Member of the R 31.2 79 0.0017 25.0 4.1 25 135-162 65-89 (117)
90 PF03811 Zn_Tnp_IS1: InsA N-te 30.6 20 0.00043 22.8 0.4 10 253-262 27-36 (36)
91 cd04445 DEP_PLEK1 DEP (Disheve 30.1 65 0.0014 25.4 3.2 35 133-172 23-58 (99)
92 PRK14890 putative Zn-ribbon RN 30.1 15 0.00033 26.2 -0.3 11 254-264 35-45 (59)
93 COG3707 AmiR Response regulato 30.1 50 0.0011 29.3 2.9 22 153-174 151-172 (194)
94 PF10302 DUF2407: DUF2407 ubiq 30.0 25 0.00054 27.6 0.9 10 135-144 86-95 (97)
95 PRK05320 rhodanese superfamily 29.8 88 0.0019 28.9 4.6 27 134-163 175-201 (257)
96 cd01529 4RHOD_Repeats Member o 28.4 75 0.0016 23.8 3.4 24 136-162 58-81 (96)
97 PF02302 PTS_IIB: PTS system, 28.1 74 0.0016 23.6 3.2 13 136-148 1-13 (90)
98 COG1831 Predicted metal-depend 27.8 3.7E+02 0.0079 25.3 8.2 73 98-174 32-109 (285)
99 TIGR02981 phageshock_pspE phag 27.4 1.5E+02 0.0032 23.1 4.9 24 136-162 60-83 (101)
100 KOG1985 Vesicle coat complex C 27.1 52 0.0011 35.3 2.9 70 251-321 214-297 (887)
101 PRK10886 DnaA initiator-associ 27.0 1.4E+02 0.003 26.4 5.3 35 117-154 23-58 (196)
102 TIGR00853 pts-lac PTS system, 27.0 46 0.001 25.8 1.9 12 135-146 4-15 (95)
103 KOG0235 Phosphoglycerate mutas 26.9 2.6E+02 0.0056 25.3 6.9 53 113-171 130-187 (214)
104 smart00355 ZnF_C2H2 zinc finge 26.5 11 0.00024 20.6 -1.3 20 256-275 1-20 (26)
105 PRK00162 glpE thiosulfate sulf 26.4 1.4E+02 0.003 22.9 4.7 27 134-163 58-84 (108)
106 PRK05772 translation initiatio 26.3 1.3E+02 0.0029 29.4 5.4 12 133-144 165-177 (363)
107 COG4738 Predicted transcriptio 26.1 53 0.0011 26.7 2.1 33 142-175 22-54 (124)
108 cd01444 GlpE_ST GlpE sulfurtra 26.1 1.5E+02 0.0033 21.8 4.8 27 133-162 54-81 (96)
109 cd01531 Acr2p Eukaryotic arsen 26.0 2.3E+02 0.005 21.9 6.0 18 135-152 63-80 (113)
110 PF03853 YjeF_N: YjeF-related 25.7 73 0.0016 27.2 3.2 72 123-199 11-85 (169)
111 PF13894 zf-C2H2_4: C2H2-type 25.7 12 0.00027 20.1 -1.2 19 256-274 1-19 (24)
112 cd01447 Polysulfide_ST Polysul 24.9 74 0.0016 23.9 2.8 24 136-162 63-86 (103)
113 PF10955 DUF2757: Protein of u 24.7 37 0.00079 25.5 0.9 15 254-268 3-17 (76)
114 cd01443 Cdc25_Acr2p Cdc25 enzy 24.4 1.6E+02 0.0035 22.9 4.7 16 136-151 68-83 (113)
115 smart00450 RHOD Rhodanese Homo 24.3 1.1E+02 0.0024 22.2 3.6 25 136-163 58-82 (100)
116 PF09419 PGP_phosphatase: Mito 24.2 53 0.0011 28.5 2.0 31 2-33 14-46 (168)
117 cd01525 RHOD_Kc Member of the 23.6 1E+02 0.0022 23.3 3.4 26 134-162 65-90 (105)
118 cd01530 Cdc25 Cdc25 phosphatas 23.1 93 0.002 24.9 3.2 21 136-158 70-91 (121)
119 cd01526 RHOD_ThiF Member of th 23.0 1.1E+02 0.0024 24.2 3.6 25 135-162 73-97 (122)
120 PRK04860 hypothetical protein; 22.7 48 0.001 28.5 1.4 17 253-269 141-157 (160)
121 COG0794 GutQ Predicted sugar p 22.7 1.8E+02 0.0039 26.1 5.0 35 120-159 27-61 (202)
122 PRK08057 cobalt-precorrin-6x r 22.6 1.1E+02 0.0024 28.2 3.8 28 9-36 46-74 (248)
123 PF12760 Zn_Tnp_IS1595: Transp 22.5 35 0.00077 22.6 0.4 11 253-263 35-45 (46)
124 smart00834 CxxC_CXXC_SSSS Puta 22.5 42 0.00091 21.2 0.8 13 253-265 3-15 (41)
125 PF01641 SelR: SelR domain; I 22.5 47 0.001 27.3 1.3 21 252-272 34-54 (124)
126 COG1571 Predicted DNA-binding 22.5 33 0.00071 34.1 0.4 14 255-268 367-380 (421)
127 PRK09590 celB cellobiose phosp 22.3 69 0.0015 25.4 2.1 11 136-146 3-13 (104)
128 cd01317 DHOase_IIa Dihydroorot 22.2 3E+02 0.0064 26.5 7.0 36 1-36 13-54 (374)
129 COG2927 HolC DNA polymerase II 21.7 1E+02 0.0023 26.0 3.2 20 123-142 17-37 (144)
130 cd07212 Pat_PNPLA9 Patatin-lik 21.4 1.2E+02 0.0026 28.8 4.0 34 138-174 32-65 (312)
131 cd07217 Pat17_PNPLA8_PNPLA9_li 21.4 1.5E+02 0.0032 28.7 4.6 43 136-181 39-81 (344)
132 PRK06036 translation initiatio 21.2 1.5E+02 0.0033 28.6 4.7 17 133-149 146-163 (339)
133 PRK05728 DNA polymerase III su 20.5 1.2E+02 0.0026 25.2 3.4 25 120-144 14-39 (142)
134 KOG1004 Exosomal 3'-5' exoribo 20.4 1.9E+02 0.004 26.2 4.6 39 134-174 185-223 (230)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=2.8e-31 Score=222.23 Aligned_cols=137 Identities=34% Similarity=0.527 Sum_probs=124.2
Q ss_pred CceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020552 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (324)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (324)
|++|.|+||+|+++++.+.+.|+++||++||||+.+..
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~------------------------------------------ 38 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP------------------------------------------ 38 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC------------------------------------------
Confidence 89999999999999999999999999999999976210
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc
Q 020552 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (324)
Q Consensus 82 ~~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (324)
+ ....++.|+++|+.|....++.+.|+.+++||+..+.+| +|||||.+|+|||+++++||||...
T Consensus 39 ----~----------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 39 ----N----------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred ----C----------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 0 012356789999999888889999999999999998877 8999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHc
Q 020552 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (324)
Q Consensus 161 ~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~ 194 (324)
||++++|+.+|+++||.+.||.+|++||+.||++
T Consensus 105 ~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 105 NLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999974
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=7.2e-31 Score=235.00 Aligned_cols=142 Identities=30% Similarity=0.500 Sum_probs=130.6
Q ss_pred CCceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCC
Q 020552 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (324)
Q Consensus 1 ~p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (324)
+|.+|.|+||||+..++.+.+.|+.+||++||||+...
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl------------------------------------------ 208 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL------------------------------------------ 208 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC------------------------------------------
Confidence 68999999999999999999999999999999997611
Q ss_pred CCCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHh
Q 020552 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (324)
Q Consensus 81 ~~~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~ 159 (324)
|+.+ ...-.+.|++||+.|....++.+.|++|+.||++++.+. .|||||.+|+|||+||++||||++
T Consensus 209 -----pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 209 -----PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred -----cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 2222 234468899999999999999999999999999999887 899999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcCC
Q 020552 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (324)
Q Consensus 160 ~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~ 196 (324)
..+++.+|+.+|+.++..|.||.+|+.||..||+++.
T Consensus 277 l~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 277 LNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred hccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999874
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=9.1e-30 Score=214.19 Aligned_cols=139 Identities=32% Similarity=0.425 Sum_probs=124.1
Q ss_pred ceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
++|++.|||++-..|.|...|+.+|||+|||++.+.
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-------------------------------------------- 53 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-------------------------------------------- 53 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------------------------------------
Confidence 589999999988888999999999999999997621
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEcCCCCchhHHHHHHHHHHhcC
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE-GGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~-g~VLVHC~aG~sRS~tvv~AyLm~~~~ 161 (324)
|+... -++.|+.+|+.|.+...+.++|+.+.+.|+..... |++||||.||+|||+++|+||||+..+
T Consensus 54 ---pn~~l---------~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 54 ---PNTSL---------PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred ---CCccC---------CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 11110 14668999999999999999999999999998765 599999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcCCC
Q 020552 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFK 197 (324)
Q Consensus 162 ~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~~ 197 (324)
+++.||+.+++++||.+.||.||++||..||..++.
T Consensus 122 msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g 157 (198)
T KOG1718|consen 122 MSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFG 157 (198)
T ss_pred chHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998753
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=8.3e-29 Score=231.92 Aligned_cols=148 Identities=35% Similarity=0.480 Sum_probs=130.8
Q ss_pred CceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020552 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (324)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (324)
+.+|.|+||+|+..++.+.+.|+..||+||||+...+.
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~------------------------------------------ 112 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCP------------------------------------------ 112 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCC------------------------------------------
Confidence 46799999999999999999999999999999987320
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc
Q 020552 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (324)
Q Consensus 82 ~~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (324)
... | ...-.+.|+.|++.|.+..+|..+|+++++||+.+..+| +|||||.+|+|||+|+++||||+.+
T Consensus 113 -----~~~-~-----~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 113 -----NPR-F-----LKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred -----ccc-c-----ccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 000 0 011157789999999999999999999999999999876 8999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcCCCcCCCC
Q 020552 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGS 202 (324)
Q Consensus 161 ~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~~~~~~~ 202 (324)
+|++++|+.+|+.+||.+.||.||+.||.+|++++.......
T Consensus 182 ~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 182 GLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999987655444
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=5.4e-28 Score=201.78 Aligned_cols=137 Identities=37% Similarity=0.533 Sum_probs=122.4
Q ss_pred CceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020552 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (324)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (324)
+++|.++||+|+++++.|.+.|+++||++||||+.+.+.
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----------------------------------------- 40 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----------------------------------------- 40 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC-----------------------------------------
Confidence 589999999999999999999999999999999873200
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc
Q 020552 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (324)
Q Consensus 82 ~~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (324)
+ .....++.|+++|+.|....++...++.+++||+...++| +|||||.+|.|||+++++||||...
T Consensus 41 ----~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 41 ----E---------NLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred ----c---------ccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 0 0112356789999999888888899999999999998876 8999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcccCCHHHHHHHHHHH
Q 020552 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFE 192 (324)
Q Consensus 161 ~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e 192 (324)
++++++|+++|+++||.+.||++|++||.+||
T Consensus 108 ~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 108 GLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999986
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=3.6e-28 Score=201.83 Aligned_cols=131 Identities=35% Similarity=0.547 Sum_probs=117.2
Q ss_pred eEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 020552 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (324)
Q Consensus 9 LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 88 (324)
||||+...+. ...|+++||++|||++..... +
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~---------------------------------------------~-- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN---------------------------------------------P-- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST---------------------------------------------S--
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC---------------------------------------------c--
Confidence 7999999999 999999999999999873200 0
Q ss_pred hhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHH
Q 020552 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGA 167 (324)
Q Consensus 89 l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~A 167 (324)
. .....++.++.+|+.|....++.+.|+.+++||+.+..+| +|||||.+|+|||+++++||||...+|++++|
T Consensus 33 ~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A 106 (133)
T PF00782_consen 33 Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEA 106 (133)
T ss_dssp H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHH
T ss_pred h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHH
Confidence 0 0123467889999999889999999999999999998766 89999999999999999999999999999999
Q ss_pred HHHHHhhCCcccCCHHHHHHHHHHHH
Q 020552 168 LESLRQSCESVCPNDGFLEQLKMFEE 193 (324)
Q Consensus 168 l~~vr~~Rp~~~pn~~f~~qL~~~e~ 193 (324)
+++|+++||.+.||++|++||.+||+
T Consensus 107 ~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 107 IEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999986
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.91 E-value=6.5e-24 Score=215.45 Aligned_cols=141 Identities=26% Similarity=0.371 Sum_probs=120.5
Q ss_pred CceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020552 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (324)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (324)
+++|.|+||||+...+.|.+.|++.||++||||+.+.+
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~------------------------------------------ 132 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFD------------------------------------------ 132 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccc------------------------------------------
Confidence 36899999999999999999999999999999975210
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHh-
Q 020552 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (324)
Q Consensus 82 ~~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~- 159 (324)
.. +.. ....++.|+++|+.|...+. .++|+++++||++.+++| +|||||.+|+|||+++++||||.+
T Consensus 133 -~~-~~~--------~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 133 -GL-DWS--------LTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred -cc-ccc--------ccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 00 000 01124678999999976654 578999999999999876 899999999999999999999976
Q ss_pred cCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcC
Q 020552 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMG 195 (324)
Q Consensus 160 ~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~ 195 (324)
.++++++|+++||++||.+.||++++++|+.|.+.+
T Consensus 202 ~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 202 PDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999876
No 8
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.82 E-value=5e-20 Score=153.42 Aligned_cols=142 Identities=24% Similarity=0.391 Sum_probs=119.6
Q ss_pred eecCCeEEcChHh-HhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 4 LVREHLFIGNISD-AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 4 ~I~~~LylG~~~~-a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
+|++.+.+|-++- ..+.+.++..|+..|+.+.++-|
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE------------------------------------------- 63 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYE------------------------------------------- 63 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchh-------------------------------------------
Confidence 5677777887743 36677788999999999987321
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcC
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~ 161 (324)
-..|-. . -+.++++++.||..|....+-.+.+.++++||++....| .|+|||.||.+||+|++++|||+..+
T Consensus 64 ~~a~s~-~------wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 64 LLAPSN-L------WKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred hhhhhH-H------HHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 111111 1 145688999999999998888888999999999998888 79999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcC
Q 020552 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEMG 195 (324)
Q Consensus 162 ~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~ 195 (324)
|++++|+++|+++||.+-..+++++.|.+|....
T Consensus 137 wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~ 170 (183)
T KOG1719|consen 137 WTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQI 170 (183)
T ss_pred CCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998743
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=6.5e-19 Score=152.50 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=77.8
Q ss_pred cceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhC----C-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 020552 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (324)
Q Consensus 100 ~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~----g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~ 174 (324)
.++.++.+|+.|...+. .+.+...++++++.+.. | +|+|||.+|+|||++++++|||...++++++|+.+|+++
T Consensus 60 ~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred CCCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35677888988865443 44466777777776532 5 899999999999999999999999889999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHcC
Q 020552 175 CESVCPNDGFLEQLKMFEEMG 195 (324)
Q Consensus 175 Rp~~~pn~~f~~qL~~~e~~~ 195 (324)
||.+ +|..|+.+|..|++..
T Consensus 139 R~~~-i~~~Q~~~l~~~~~~~ 158 (166)
T PTZ00242 139 RKGA-INQTQLQFLKKYKPRK 158 (166)
T ss_pred CCCC-chHHHHHHHHHHHHHh
Confidence 9976 5899999999998753
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=1.1e-18 Score=157.18 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=80.4
Q ss_pred cceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcc
Q 020552 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESV 178 (324)
Q Consensus 100 ~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~ 178 (324)
.++.++++|+.|...++ .+.+++.+++|+..++.| +|+|||.+|+|||++++++|||. .|+++++|+++||++||.+
T Consensus 136 ~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgA 213 (241)
T PTZ00393 136 AGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGA 213 (241)
T ss_pred cCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC
Confidence 35666777887865554 455778888898888777 89999999999999999999998 6999999999999999977
Q ss_pred cCCHHHHHHHHHHHHcCC
Q 020552 179 CPNDGFLEQLKMFEEMGF 196 (324)
Q Consensus 179 ~pn~~f~~qL~~~e~~~~ 196 (324)
+|..|++.|+.|++...
T Consensus 214 -In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 214 -INKRQLQFLKAYKKKKK 230 (241)
T ss_pred -CCHHHHHHHHHHHHhcc
Confidence 69999999999998763
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.60 E-value=5.1e-15 Score=129.84 Aligned_cols=95 Identities=27% Similarity=0.379 Sum_probs=76.6
Q ss_pred CCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHh-cCCCHHHHHHHHHhhC
Q 020552 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT-EQLSSEGALESLRQSC 175 (324)
Q Consensus 98 ~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~-~~~s~~~Al~~vr~~R 175 (324)
...++.++++|+.|...+++ +.++++++||++++++| +|+|||.+|+|||+||++||||.. ..+..++|+..++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 34467778999999888887 77999999999999998 999999999999999999999999 4566667777777777
Q ss_pred CcccCCHHHHHHHHHHHHcC
Q 020552 176 ESVCPNDGFLEQLKMFEEMG 195 (324)
Q Consensus 176 p~~~pn~~f~~qL~~~e~~~ 195 (324)
|. ++....+++..++...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 75 5555555555555544
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.59 E-value=2.2e-14 Score=125.57 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=79.5
Q ss_pred CCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCc
Q 020552 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCES 177 (324)
Q Consensus 98 ~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~ 177 (324)
...++.|+.+++.|...++.. .+.+.++..+.+++.|+|.|||.+|.|||+++++||||+.+|+++.||++.||..||.
T Consensus 112 ~~~Gi~h~~l~f~Dg~tP~~~-~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG 190 (225)
T KOG1720|consen 112 TDAGIDHHDLFFADGSTPTDA-IVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPG 190 (225)
T ss_pred cccCceeeeeecCCCCCCCHH-HHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCc
Confidence 345778888888887665543 3556667777777756999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHH
Q 020552 178 VCPNDGFLEQLKMFEE 193 (324)
Q Consensus 178 ~~pn~~f~~qL~~~e~ 193 (324)
+-..+.+...|.++..
T Consensus 191 ~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 191 AVIGPQQHKLLHKQRD 206 (225)
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999888777776655
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.41 E-value=7.3e-13 Score=113.19 Aligned_cols=106 Identities=20% Similarity=0.322 Sum_probs=66.4
Q ss_pred HhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhc
Q 020552 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (324)
Q Consensus 17 a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~ 96 (324)
..|++.|++.|++.||.+.+. .|+....+.+.. ..+
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~-----------------~EL~~l~Vp~L~--------------------------~~~- 96 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTD-----------------HELARLGVPDLG--------------------------EAA- 96 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-H-----------------HHHHHTT-TTHH--------------------------HHH-
T ss_pred HHHHHHHHHCCCCEEEEeCcH-----------------HHHHHcCCccHH--------------------------HHH-
Confidence 678889999999999999873 355544432222 222
Q ss_pred cCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHH
Q 020552 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGAL 168 (324)
Q Consensus 97 ~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~-~~s~~~Al 168 (324)
...++.++++|+.|...+++.... ++++.|...+++| +|+|||.+|+|||+.|++++|+... .+++++|+
T Consensus 97 -~~~Gi~~~h~PI~D~~aPd~~~~~-~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 97 -QARGIAWHHLPIPDGSAPDFAAAW-QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -HHTT-EEEE----TTS---HHHHH-HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred -HHcCCEEEecCccCCCCCCHHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 233566678899888888765544 5778888888888 8999999999999999988888764 48999886
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.38 E-value=2e-12 Score=111.78 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=77.8
Q ss_pred ceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
+.|.++||-|+++.+.+..+|+++|+++||+|....
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~-------------------------------------------- 43 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEP-------------------------------------------- 43 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---------------------------------------------
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCC--------------------------------------------
Confidence 368999999999999999999999999999997621
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCC---ccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHh
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMES---ENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~---~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~ 159 (324)
...... .-+... ++...++++..... ..-.+.+.++++.|.+. ++.+|||||..|..||++|+++|= +.
T Consensus 44 -~~~~~~---~f~~~~--~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~ 115 (164)
T PF03162_consen 44 -PSQDFL---EFAEEN--GIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KL 115 (164)
T ss_dssp ---HHHH---HHHHHT--T-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HH
T ss_pred -CCHHHH---HHHhhc--CceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HH
Confidence 000111 111233 34455566554322 11233455566655433 346999999999999988888877 77
Q ss_pred cCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHc
Q 020552 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (324)
Q Consensus 160 ~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~ 194 (324)
+||+...|++..+.--. ...+..-...++.|...
T Consensus 116 Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~ 149 (164)
T PF03162_consen 116 QGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVE 149 (164)
T ss_dssp TTB-HHHHHHHHHHHHG-GG--HHHHHHHHT----
T ss_pred cCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcc
Confidence 89999999999986322 13344444555555543
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.33 E-value=1.8e-11 Score=102.41 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred ceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
.+|++++|+++..+..|.+.|+++||++|||++...| .
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E------------------------------------------~ 40 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDRE------------------------------------------E 40 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCC------------------------------------------C
Confidence 4799999999999999999999999999999986321 0
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
...|... .+.......++.|.+||+...... ........++++. ..++||+||.+|. ||+.+.+.++.. .|+
T Consensus 41 ~~~p~~~--~~~~~a~~~gl~y~~iPv~~~~~~--~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~ 112 (135)
T TIGR01244 41 ESQPDFA--QIKAAAEAAGVTYHHQPVTAGDIT--PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQAA-EGV 112 (135)
T ss_pred CCCCCHH--HHHHHHHHCCCeEEEeecCCCCCC--HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHHH-cCC
Confidence 0111110 000011234677788887753321 1122233333432 2479999999999 987666555544 799
Q ss_pred CHHHHHHHHHhhCCccc
Q 020552 163 SSEGALESLRQSCESVC 179 (324)
Q Consensus 163 s~~~Al~~vr~~Rp~~~ 179 (324)
+.+++++..+...-.+.
T Consensus 113 ~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 113 PVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999987765544
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.27 E-value=4.3e-11 Score=98.00 Aligned_cols=56 Identities=29% Similarity=0.426 Sum_probs=47.6
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 193 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~ 193 (324)
.|.|||.+|+||++.+++..|+.. ||.+++|++++|++|. ...|..++..|..|..
T Consensus 99 cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr-ga~n~kql~~lekyrp 154 (173)
T KOG2836|consen 99 CVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR-GAINSKQLLYLEKYRP 154 (173)
T ss_pred eEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh-ccccHHHHHHHHHhCc
Confidence 799999999999999888888876 9999999999999998 5678776666666543
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.09 E-value=1.4e-09 Score=85.27 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=59.9
Q ss_pred ecCCCCCccHHHHHHHHHHHHHHHHh----CCcEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHHhhCCc
Q 020552 108 PIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSCES 177 (324)
Q Consensus 108 ~i~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AyLm~~~------~~s~~~Al~~vr~~Rp~ 177 (324)
+..|...++....|...++.+..... +++|+|||.+|+|||++++++|++... ..++.+++..+|..||.
T Consensus 9 ~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~ 88 (105)
T smart00012 9 GWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPG 88 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Confidence 33344333333445555555555543 469999999999999999999988652 37899999999999999
Q ss_pred ccCCHHHHHHHH
Q 020552 178 VCPNDGFLEQLK 189 (324)
Q Consensus 178 ~~pn~~f~~qL~ 189 (324)
...+..+...+.
T Consensus 89 ~~~~~~q~~~~~ 100 (105)
T smart00012 89 MVQTFEQYLFLY 100 (105)
T ss_pred hCCcHHHHHHHH
Confidence 888877665544
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.09 E-value=1.4e-09 Score=85.27 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=59.9
Q ss_pred ecCCCCCccHHHHHHHHHHHHHHHHh----CCcEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHHhhCCc
Q 020552 108 PIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSCES 177 (324)
Q Consensus 108 ~i~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AyLm~~~------~~s~~~Al~~vr~~Rp~ 177 (324)
+..|...++....|...++.+..... +++|+|||.+|+|||++++++|++... ..++.+++..+|..||.
T Consensus 9 ~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~ 88 (105)
T smart00404 9 GWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPG 88 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Confidence 33344333333445555555555543 469999999999999999999988652 37899999999999999
Q ss_pred ccCCHHHHHHHH
Q 020552 178 VCPNDGFLEQLK 189 (324)
Q Consensus 178 ~~pn~~f~~qL~ 189 (324)
...+..+...+.
T Consensus 89 ~~~~~~q~~~~~ 100 (105)
T smart00404 89 MVQTFEQYLFLY 100 (105)
T ss_pred hCCcHHHHHHHH
Confidence 888877665544
No 19
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.07 E-value=1.1e-09 Score=91.51 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHH-HHHHHHhcCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q 020552 115 ENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 193 (324)
Q Consensus 115 ~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv-~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~ 193 (324)
..-..|...+++|+++.-+.-++||||.+|+|||.+++ +|.|.....++..+..+.++..+|.+.||+.. |..+..
T Consensus 74 ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rl---iaI~d~ 150 (172)
T COG5350 74 APGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRL---IAIADA 150 (172)
T ss_pred CCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhH---HHHHHH
Confidence 33457889999999999777799999999999997654 44556667899999999999999999999976 444444
Q ss_pred cC
Q 020552 194 MG 195 (324)
Q Consensus 194 ~~ 195 (324)
++
T Consensus 151 ~l 152 (172)
T COG5350 151 AL 152 (172)
T ss_pred HH
Confidence 43
No 20
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.06 E-value=6.9e-10 Score=89.61 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=55.2
Q ss_pred ceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
.+|++.+|++++..+.+++.|++.||++|||++...| +
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E------------------------------------------~ 40 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGE------------------------------------------E 40 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTS------------------------------------------T
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCC------------------------------------------C
Confidence 4799999999999999999999999999999975210 0
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHH
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIIT 153 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~ 153 (324)
...| ....+.......++.|.+||+..... -.+.+....+.+++. .++||+||..|. ||.++.+
T Consensus 41 ~~qp--~~~~~~~~a~~~Gl~y~~iPv~~~~~--~~~~v~~f~~~l~~~--~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 41 PGQP--SSAEEAAAAEALGLQYVHIPVDGGAI--TEEDVEAFADALESL--PKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp TT-T---HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHHHHHTT--TTSEEEE-SCSH-HHHHHHH
T ss_pred CCCC--CHHHHHHHHHHcCCeEEEeecCCCCC--CHHHHHHHHHHHHhC--CCCEEEECCCCh-hHHHHHH
Confidence 0001 11122333456678888899875321 122233333333322 469999999994 9866543
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.82 E-value=3.1e-08 Score=89.71 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=64.3
Q ss_pred CcceEEEEEec-CCCCCccHHHHHHHHHHHHHHHHh---CCcEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHH
Q 020552 99 DLKLVRMTVPI-RDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALE 169 (324)
Q Consensus 99 ~~~i~~l~i~i-~D~~~~~l~~~~~~~~~fI~~~~~---~g~VLVHC~aG~sRS~tvv~AyLm~~-----~~~s~~~Al~ 169 (324)
...+.++++.- .|...++....|...++.++.... .++|+|||.+|+|||+++++++++.. ..+++.+|+.
T Consensus 127 ~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~ 206 (231)
T cd00047 127 TRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVK 206 (231)
T ss_pred ceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 33455555542 333333333445455555555542 45999999999999999999987654 2699999999
Q ss_pred HHHhhCCcccCCHHHHHHHH
Q 020552 170 SLRQSCESVCPNDGFLEQLK 189 (324)
Q Consensus 170 ~vr~~Rp~~~pn~~f~~qL~ 189 (324)
.+|+.||.+-.+..+...+.
T Consensus 207 ~iR~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 207 ELRSQRPGMVQTEEQYIFLY 226 (231)
T ss_pred HHHhccccccCCHHHHHHHH
Confidence 99999999988887766554
No 22
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.80 E-value=3.4e-08 Score=85.14 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (324)
++|||||.+|+.|+ .+++|.|+...|++.+++++-.
T Consensus 125 ~p~l~HC~aGKDRT-G~~~alll~~lGV~~~~I~~DY 160 (164)
T PF13350_consen 125 GPVLFHCTAGKDRT-GVVAALLLSLLGVPDEDIIADY 160 (164)
T ss_dssp --EEEE-SSSSSHH-HHHHHHHHHHTT--HHHHHHHH
T ss_pred CcEEEECCCCCccH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 69999999999999 5556777777899999887654
No 23
>PLN02727 NAD kinase
Probab=98.75 E-value=4.5e-08 Score=102.37 Aligned_cols=112 Identities=8% Similarity=0.099 Sum_probs=77.3
Q ss_pred CeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 020552 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (324)
Q Consensus 8 ~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 87 (324)
.+|++++..+.++++|.+.||++|||++...+ . ..
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E-------------------------------------------~--~q 296 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIV-------------------------------------------K--DN 296 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCc-------------------------------------------C--CC
Confidence 48999999999999999999999999976220 0 00
Q ss_pred chhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHH
Q 020552 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEG 166 (324)
Q Consensus 88 ~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~ 166 (324)
.....++......++.|++||+.+..... .+.++++.+++++. ...+||+||..|..|+++++++||...-+.....
T Consensus 297 ~~~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~ 373 (986)
T PLN02727 297 FYQAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERL 373 (986)
T ss_pred chhHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHcccchhh
Confidence 11112333344567888889986644333 23344555555332 2469999999999999999999999876654333
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.71 E-value=8e-08 Score=88.58 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHh--CCcEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHhhCCcccCCHHHHHHHH
Q 020552 120 YLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQLK 189 (324)
Q Consensus 120 ~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AyLm~~-----~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~ 189 (324)
.+.+.+..++.... .|+|+|||.+|+|||+++++++++.. ..+++.+++..||+.||.+-.+..++..+.
T Consensus 177 ~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~ 253 (258)
T smart00194 177 SILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLY 253 (258)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 34444444444433 46999999999999999999987643 469999999999999999999988766654
No 25
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=4.8e-07 Score=72.99 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=78.7
Q ss_pred ceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
.+|++.|+|+++....|+..++..|++.|||..... ++
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDg------------------------------------------Ee 41 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDG------------------------------------------EE 41 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCC------------------------------------------CC
Confidence 469999999999999999999999999999997521 00
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHh--CCcEEEEcCCCCchhHHHHHHHHHHhc
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (324)
...|..- .+.......++.|.+||+.-..... ..++-..+++. +|+||.||..| .||.++- +.--...
T Consensus 42 ~~QP~~~--~i~~aa~~aGl~y~~iPV~~~~iT~------~dV~~f~~Al~eaegPVlayCrsG-tRs~~ly-~~~~~~~ 111 (130)
T COG3453 42 PGQPGFA--AIAAAAEAAGLTYTHIPVTGGGITE------ADVEAFQRALDEAEGPVLAYCRSG-TRSLNLY-GLGELDG 111 (130)
T ss_pred CCCCChH--HHHHHHHhcCCceEEeecCCCCCCH------HHHHHHHHHHHHhCCCEEeeecCC-chHHHHH-HHHHHhc
Confidence 1112211 2233344557778999997633221 22222233332 67999999999 6884432 2222556
Q ss_pred CCCHHHHHHHHHhh
Q 020552 161 QLSSEGALESLRQS 174 (324)
Q Consensus 161 ~~s~~~Al~~vr~~ 174 (324)
||+.+++.++=+.+
T Consensus 112 gm~~de~~a~g~a~ 125 (130)
T COG3453 112 GMSRDEIEALGQAA 125 (130)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999987765543
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.37 E-value=2.4e-06 Score=84.73 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=66.3
Q ss_pred ceEEEEEec-CCCCCccHHHHHHHHHHHHHHHHhC----------CcEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHH
Q 020552 101 KLVRMTVPI-RDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGAL 168 (324)
Q Consensus 101 ~i~~l~i~i-~D~~~~~l~~~~~~~~~fI~~~~~~----------g~VLVHC~aG~sRS~tvv~AyLm~~~-~~s~~~Al 168 (324)
.+.++++.- .|...++-...+...++.|+...+. +.++|||.+|+|||++++++++|... ..++++++
T Consensus 422 tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV 501 (535)
T PRK15375 422 TIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVR 501 (535)
T ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHH
Confidence 455555544 3433333233344455555543211 23589999999999999999998754 48999999
Q ss_pred HHHHhhCCc-ccCCHHHHHHHHHHHHcC
Q 020552 169 ESLRQSCES-VCPNDGFLEQLKMFEEMG 195 (324)
Q Consensus 169 ~~vr~~Rp~-~~pn~~f~~qL~~~e~~~ 195 (324)
..+|..|+. +--+..++..|......+
T Consensus 502 ~dlR~qRng~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 502 ADFRNSRNNRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred HHHHhcCCccccccHHHHHHHHHHHHHH
Confidence 999999998 777888888888776643
No 27
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.27 E-value=5.3e-06 Score=78.63 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCcccCCHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLE 186 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~ 186 (324)
++|+|||.+|+|||+++++...+. ...+++.+++..+|+.|+.+-.+..+..
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~ 286 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYI 286 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHH
Confidence 689999999999999988766543 2357899999999999998888776543
No 28
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.25 E-value=6.6e-06 Score=73.81 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=53.1
Q ss_pred HHHHHHHHHH--hCCcEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHhhCCcccCCHHHHHHHHH
Q 020552 123 VCFDFIDRRR--KEGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQLKM 190 (324)
Q Consensus 123 ~~~~fI~~~~--~~g~VLVHC~aG~sRS~tvv~AyLm~~-----~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~ 190 (324)
..++.+.... ..++|+|||.+|.|||++++++.+|.. ...++.+++..+|+.||.+-.+..++..+..
T Consensus 157 ~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 157 DFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred hhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 4444444444 235899999999999999998887643 3589999999999999999999887666543
No 29
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.24 E-value=7e-06 Score=73.83 Aligned_cols=119 Identities=13% Similarity=0.233 Sum_probs=81.2
Q ss_pred ceecCCeEEcChHhHhhHhhhccCCCeEEEEcccccccchhhccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020552 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (324)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
+.|.++||-++++...+..+|+.++.+.||+|+.+.
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-------------------------------------------- 96 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-------------------------------------------- 96 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCC--------------------------------------------
Confidence 357889999999999999999999999999998632
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCC------CCCccHHH-HHHHHHHHHHHHHhC-C-cEEEEcCCCCchhHHHHH
Q 020552 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRD------MESENLLD-YLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIIT 153 (324)
Q Consensus 83 ~~~p~~l~~~~~~~~~~~~i~~l~i~i~D------~~~~~l~~-~~~~~~~fI~~~~~~-g-~VLVHC~aG~sRS~tvv~ 153 (324)
.+.+.+.|. ... +|.+.+|-+.. .+..++.+ .+..+++++ +.. + ++||||..|..|+++|+.
T Consensus 97 -yp~~nl~f~---~~~--~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~l---ld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 97 -YPEENLNFL---ESN--GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVL---LDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred -CChHHHHHH---Hhc--CceEEEEecccccccccCCCCCChHHHHHHHHHHH---hcccCCceEEecCCCCcchhhhHH
Confidence 111223331 122 34445555432 23344433 355555553 333 3 899999999999977775
Q ss_pred HHHHHhcCCCHHHHHHHHHhhC
Q 020552 154 AYLMRTEQLSSEGALESLRQSC 175 (324)
Q Consensus 154 AyLm~~~~~s~~~Al~~vr~~R 175 (324)
+ |=+.++|++.-.+...+..-
T Consensus 168 c-lRklq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 168 C-LRKLQNWSLSSILDEYLRFA 188 (249)
T ss_pred H-HHHHhccchhHHHHHHHHhc
Confidence 5 44788999999998776643
No 30
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.20 E-value=2.1e-06 Score=73.11 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=44.6
Q ss_pred cCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHH
Q 020552 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMR 158 (324)
Q Consensus 97 ~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~ 158 (324)
....++.|.+||+.|. ..+..+.|++.++|+...-+...+.+||.+|.|||.+..+.|.|.
T Consensus 88 ~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 88 VEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999996 566677899999999988443489999999999998888777664
No 31
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.19 E-value=9.4e-06 Score=76.76 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCcccCCHHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~q 187 (324)
|+|+|||.+|+|||+++++...+. ...+++.+++..+|+.|+..-.+..+...
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F 279 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVF 279 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHH
Confidence 589999999999999988766443 34589999999999999998888765433
No 32
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.17 E-value=9.8e-06 Score=77.51 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=44.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCcccCCHHHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (324)
|+|+|||.+|+|||+++|+...+. ...+++.+++..+|..|+.+-.+..+...+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~ 306 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFC 306 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHH
Confidence 689999999999999988765432 245899999999999999988887665443
No 33
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.12 E-value=1.9e-05 Score=75.18 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCcccCCHHHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (324)
|+|+|||.+|+|||+++++..++. ...++..+++..+|..|+.+-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 689999999999999998776432 246899999999999999998887765555
No 34
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.09 E-value=1.3e-05 Score=79.06 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=67.9
Q ss_pred EEecCCCCCccHHHHHHHHHHHHHHHHhCC---cEEEEcCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHHhhC---C--
Q 020552 106 TVPIRDMESENLLDYLDVCFDFIDRRRKEG---GVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQSC---E-- 176 (324)
Q Consensus 106 ~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g---~VLVHC~aG~sRS~tvv~AyLm~~~~~s-~~~Al~~vr~~R---p-- 176 (324)
.++..|...+.+ +.+..+++-++..+... .|.|||.+|.+|++++++||||...-.. +++|+.+.-.+| .
T Consensus 77 ~~~~~Dh~~P~L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~ 155 (434)
T KOG2283|consen 77 RFGFDDHNPPPL-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKS 155 (434)
T ss_pred ecCCCCCCCCcH-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhcccccc
Confidence 356677655554 45667888889988754 5899999999999999999999986554 899999998888 3
Q ss_pred cccCCHHHHHHHHHHHHc
Q 020552 177 SVCPNDGFLEQLKMFEEM 194 (324)
Q Consensus 177 ~~~pn~~f~~qL~~~e~~ 194 (324)
...--+.+.+.+.-|+..
T Consensus 156 ~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 156 KGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred CCccCchhhHHHHHHHHH
Confidence 123345677888888874
No 35
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.09 E-value=3.4e-05 Score=76.57 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=71.6
Q ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHHhC--C-cEEEEcCCCCchhHHHHHHHHHHhcCC----------------CHH
Q 020552 105 MTVPIRDMESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQL----------------SSE 165 (324)
Q Consensus 105 l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aG~sRS~tvv~AyLm~~~~~----------------s~~ 165 (324)
+.++-......++...|++++.|+...+.+ + +|||+|..|...|++|++|.|+..++. ...
T Consensus 344 l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR 423 (451)
T PF04179_consen 344 LPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIR 423 (451)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHH
Confidence 334434456677889999999999999887 5 899999999999999999999987642 234
Q ss_pred HHHHHHHhhCCcccCCHHHHHHHHHH
Q 020552 166 GALESLRQSCESVCPNDGFLEQLKMF 191 (324)
Q Consensus 166 ~Al~~vr~~Rp~~~pn~~f~~qL~~~ 191 (324)
+-|..|.+.+|.+.|+++.++++..|
T Consensus 424 ~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 424 QRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 46888899999999999999888765
No 36
>PHA02738 hypothetical protein; Provisional
Probab=98.02 E-value=3.8e-05 Score=73.38 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHH-H----hcCCCHHHHHHHHHhhCCcccCCHHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLM-R----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm-~----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~q 187 (324)
|+|+|||.+|+|||+++++.-.+ . ...+++.+++..+|+.|+..-.+..+...
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 58999999999999998766543 2 23589999999999999998888776544
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.76 E-value=0.00013 Score=67.28 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcccCCHHHHHHHHH
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKM 190 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~ 190 (324)
+++||+||.+|..|++.+++.|++...++....+-.+++.-++......+-..+...
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~ 192 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSE 192 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhh
Confidence 379999999999999888888888875555556666777666655555533333333
No 38
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.72 E-value=0.00013 Score=77.33 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhC-C-cEEEEcCCCCchhHHHHHHHHH----Hh-cCCCHHHHHHHHHhhCCcccCCHH
Q 020552 111 DMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAYLM----RT-EQLSSEGALESLRQSCESVCPNDG 183 (324)
Q Consensus 111 D~~~~~l~~~~~~~~~fI~~~~~~-g-~VLVHC~aG~sRS~tvv~AyLm----~~-~~~s~~~Al~~vr~~Rp~~~pn~~ 183 (324)
|...++-.++|-..++.|+..+.. + +|+|||.||+|||++++++=+| .. ..+++-+.++.+|..|-.+-++..
T Consensus 1038 DHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~ 1117 (1144)
T KOG0792|consen 1038 DHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLS 1117 (1144)
T ss_pred cCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchH
Confidence 333344444454444555555444 5 8999999999999988755443 32 358889999999999998888877
Q ss_pred HHHHH
Q 020552 184 FLEQL 188 (324)
Q Consensus 184 f~~qL 188 (324)
+....
T Consensus 1118 QYkFV 1122 (1144)
T KOG0792|consen 1118 QYKFV 1122 (1144)
T ss_pred HhhHH
Confidence 65443
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.65 E-value=0.00011 Score=67.27 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=50.2
Q ss_pred ceEEEEEec-CCCCCccHHHHHHHHHHHHHHHH----hCCcEEEEcCCCCchhHHHHHHH-HHHhcCCC-----------
Q 020552 101 KLVRMTVPI-RDMESENLLDYLDVCFDFIDRRR----KEGGVLVHCFAGVSRSAAIITAY-LMRTEQLS----------- 163 (324)
Q Consensus 101 ~i~~l~i~i-~D~~~~~l~~~~~~~~~fI~~~~----~~g~VLVHC~aG~sRS~tvv~Ay-Lm~~~~~s----------- 163 (324)
.++|++.+- .|...+++ .+..++|+... ..|+++|||.||+||++|+++.- |++...-+
T Consensus 184 ~Ihhf~y~nW~D~~~p~i----~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~ 259 (302)
T COG5599 184 KIHHFQYINWVDFNVPDI----RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQ 259 (302)
T ss_pred EEEEEEecCccccCCcCH----HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhh
Confidence 455555554 45555544 34445665554 34699999999999999987555 44432211
Q ss_pred --HHHHHHHHHhhCCcccCCHHHHHHH
Q 020552 164 --SEGALESLRQSCESVCPNDGFLEQL 188 (324)
Q Consensus 164 --~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (324)
..+.+..+|+.|..+--|..+...|
T Consensus 260 D~if~iV~~LRsQRmkmVQn~~Qf~fl 286 (302)
T COG5599 260 DLIFQIVLSLRSQRMKMVQNKTQFKFL 286 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 2345566677776665555544443
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.64 E-value=7.8e-05 Score=72.43 Aligned_cols=56 Identities=18% Similarity=0.452 Sum_probs=43.3
Q ss_pred hCCcEEEEcCCCCchhHHHH-HHHHHH---hc----CCCHHHHHHHHHhhCCcccCCHHHHHHH
Q 020552 133 KEGGVLVHCFAGVSRSAAII-TAYLMR---TE----QLSSEGALESLRQSCESVCPNDGFLEQL 188 (324)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv-~AyLm~---~~----~~s~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (324)
..|+|.|||.||+||+++++ +-.||. .. .++....+++||+.|..+.-...+.+.+
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 45899999999999999955 445553 33 4789999999999999877766655444
No 41
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.52 E-value=0.00025 Score=68.78 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcC
Q 020552 122 DVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMG 195 (324)
Q Consensus 122 ~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~ 195 (324)
..+-.|+......+ =|+|||.+|.+|++-++++|||...+|+..+|++.+...||...--...+..|...+..-
T Consensus 111 ~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 111 KLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred HHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 33444555454456 599999999999999999999999999999999999999987666666667777666543
No 42
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.0022 Score=61.25 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHH-HHHhcC----CCHHHHHHHHHhhCCcccCCHHHHHHHH
Q 020552 134 EGGVLVHCFAGVSRSAAIITAY-LMRTEQ----LSSEGALESLRQSCESVCPNDGFLEQLK 189 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~Ay-Lm~~~~----~s~~~Al~~vr~~Rp~~~pn~~f~~qL~ 189 (324)
.++++|||.+|++|++|+++.- |++..+ .+.-.++..+|..|+.+.+|..++-.|.
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~ 347 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLH 347 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHH
Confidence 3489999999999999987655 444332 4566677778999999999987665554
No 43
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.95 E-value=0.0032 Score=61.68 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHH-HHHh--c---CCCHHHHHHHHHhhCCcccCCHHHH
Q 020552 134 EGGVLVHCFAGVSRSAAIITAY-LMRT--E---QLSSEGALESLRQSCESVCPNDGFL 185 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~Ay-Lm~~--~---~~s~~~Al~~vr~~Rp~~~pn~~f~ 185 (324)
.+++.|||.+|+||++++++.. .+.. . ..+..+.+..+|..|+.+..+..+.
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy 356 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQY 356 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHH
Confidence 3699999999999999988654 2222 1 2458888888999998887776654
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.57 E-value=0.06 Score=58.18 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=47.4
Q ss_pred CCccHHHHHHHHHHHHHHHH-----hCCcEEEEcCCCCchhHHHHHHH-----HHHhcCCCHHHHHHHHHhhCCcccCCH
Q 020552 113 ESENLLDYLDVCFDFIDRRR-----KEGGVLVHCFAGVSRSAAIITAY-----LMRTEQLSSEGALESLRQSCESVCPND 182 (324)
Q Consensus 113 ~~~~l~~~~~~~~~fI~~~~-----~~g~VLVHC~aG~sRS~tvv~Ay-----Lm~~~~~s~~~Al~~vr~~Rp~~~pn~ 182 (324)
+......+--..+.|++... ..|+++|||.||+|||+++++.= ++.....+.-.-+..+|..|+...-..
T Consensus 704 pd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~ 783 (1087)
T KOG4228|consen 704 PDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTE 783 (1087)
T ss_pred CCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccH
Confidence 33333334345567777654 35899999999999999855221 223345777778888888888765554
Q ss_pred HH
Q 020552 183 GF 184 (324)
Q Consensus 183 ~f 184 (324)
.+
T Consensus 784 eQ 785 (1087)
T KOG4228|consen 784 EQ 785 (1087)
T ss_pred HH
Confidence 43
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.00 E-value=0.2 Score=42.21 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=39.0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhC----CcEEEEcCCCCch----hHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Q 020552 110 RDMESENLLDYLDVCFDFIDRRRKE----GGVLVHCFAGVSR----SAAIITAYLMRTEQLSSEGALESLRQSCE 176 (324)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~----g~VLVHC~aG~sR----S~tvv~AyLm~~~~~s~~~Al~~vr~~Rp 176 (324)
.|.++-++.... ..+.-+++.++. ++.+|||...-.+ ++.++.||+|...+|++++|++-+...-|
T Consensus 39 ~DFGPlnL~~ly-rfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQLY-RFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHHHH-HHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHHHH-HHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 566777766544 334445555553 6899998876544 36688999999999999999999987754
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.90 E-value=0.18 Score=54.56 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHhhCCcccCCHHH
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGF 184 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~-----~~~s~~~Al~~vr~~Rp~~~pn~~f 184 (324)
.+++.|||..|.+||++++++-++.. .-++.-++++.+|..||.+.-...+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~Q 1073 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQ 1073 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHH
Confidence 56999999999999999886654432 2378888999999999976554443
No 47
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.88 E-value=0.25 Score=51.16 Aligned_cols=62 Identities=23% Similarity=0.444 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHh--CC---cEEEEcCCCCchhHHHHHHH-HHHh-----cCCCHHHHHHHHHhhCCcccCCHH
Q 020552 122 DVCFDFIDRRRK--EG---GVLVHCFAGVSRSAAIITAY-LMRT-----EQLSSEGALESLRQSCESVCPNDG 183 (324)
Q Consensus 122 ~~~~~fI~~~~~--~g---~VLVHC~aG~sRS~tvv~Ay-Lm~~-----~~~s~~~Al~~vr~~Rp~~~pn~~ 183 (324)
...++|-.+..+ .| +|+|||..|-||+++-++-= ++.+ ..++....++++|..||.+.-...
T Consensus 910 rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkd 982 (1004)
T KOG0793|consen 910 RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKD 982 (1004)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehh
Confidence 455667555443 23 69999999999998854332 2222 247888889999999998755443
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=0.17 Score=51.42 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=23.0
Q ss_pred HHHHHHhC-C-cEEEEcCCCCchhHHHH-HHHHHH
Q 020552 127 FIDRRRKE-G-GVLVHCFAGVSRSAAII-TAYLMR 158 (324)
Q Consensus 127 fI~~~~~~-g-~VLVHC~aG~sRS~tvv-~AyLm~ 158 (324)
.|...++. + .|||||.-|..|++-++ +|.||.
T Consensus 365 ~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 365 RIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 34444444 4 79999999999998866 566664
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=83.70 E-value=5.6 Score=30.57 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 62 ~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 62 KKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred CEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 3899999998 68854 33444 445653
No 50
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=83.40 E-value=2.6 Score=40.85 Aligned_cols=20 Identities=45% Similarity=0.815 Sum_probs=15.7
Q ss_pred hCC-cEEEEcCCCCchhHHHH
Q 020552 133 KEG-GVLVHCFAGVSRSAAII 152 (324)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv 152 (324)
.+| .|||||..|.+|++-|+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 456 89999999999995544
No 51
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=83.33 E-value=2.3 Score=43.51 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=23.4
Q ss_pred HHHHHHHh-CC-cEEEEcCCCCchhHHHH-HHHHHH
Q 020552 126 DFIDRRRK-EG-GVLVHCFAGVSRSAAII-TAYLMR 158 (324)
Q Consensus 126 ~fI~~~~~-~g-~VLVHC~aG~sRS~tvv-~AyLm~ 158 (324)
.+|.+++. +| .|||||.-|.+|+.-|+ +|=||.
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 45556666 45 89999999999996655 344543
No 52
>PRK01415 hypothetical protein; Validated
Probab=77.01 E-value=4.7 Score=37.17 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
+.+|+++|.+| .|| ..++++|.. .|..
T Consensus 171 ~k~Iv~yCtgG-iRs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 171 GKKIAMVCTGG-IRC-EKSTSLLKS-IGYD 197 (247)
T ss_pred CCeEEEECCCC-hHH-HHHHHHHHH-cCCC
Confidence 34899999999 487 555566644 4543
No 53
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=67.52 E-value=1.6 Score=30.13 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=14.6
Q ss_pred ccccccccceeeecCcee
Q 020552 255 AYRCKKCRRVVALQENVV 272 (324)
Q Consensus 255 ~~rCRKCRr~Lf~~~~il 272 (324)
.+||+.|.+.||...++.
T Consensus 4 eiRC~~CnklLa~~g~~~ 21 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGEVI 21 (51)
T ss_pred ceeccchhHHHhhhcCcc
Confidence 589999999999964443
No 54
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=66.74 E-value=1.9 Score=33.46 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=18.3
Q ss_pred ccccccccceeeecCceec
Q 020552 255 AYRCKKCRRVVALQENVVD 273 (324)
Q Consensus 255 ~~rCRKCRr~Lf~~~~il~ 273 (324)
+|.|++|+..|+.+.+++.
T Consensus 2 vf~C~~C~t~l~ds~~lvs 20 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVS 20 (96)
T ss_pred EEECCCCCCCcCCHHHhee
Confidence 6899999999999999999
No 55
>smart00400 ZnF_CHCC zinc finger.
Probab=58.30 E-value=12 Score=25.83 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=23.8
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020552 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (324)
Q Consensus 138 LVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (324)
..||.+- ++++.+ +.++|+..++++.+|++.+
T Consensus 23 ~~~Cf~c-g~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFGC-GAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeCC-CCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 4677752 455444 6788888899999999875
No 56
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=57.37 E-value=17 Score=34.67 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 193 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~ 193 (324)
.+|+|+|..| .|| ..+++||.. .|.+ -.....-|+...+..+..
T Consensus 172 k~IvvyC~~G-~Rs-~~aa~~L~~-~Gf~------------~V~~L~GGi~~w~~~~~~ 215 (314)
T PRK00142 172 KKVVMYCTGG-IRC-EKASAWMKH-EGFK------------EVYQLEGGIITYGEDPET 215 (314)
T ss_pred CeEEEECCCC-cHH-HHHHHHHHH-cCCC------------cEEEecchHHHHHHhhcc
Confidence 4899999999 587 455566654 4653 112345566666655543
No 57
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=57.33 E-value=17 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhh
Q 020552 149 AAIITAYLMRTEQLSSEGALESLRQS 174 (324)
Q Consensus 149 ~tvv~AyLm~~~~~s~~~Al~~vr~~ 174 (324)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 34567889999999999999999764
No 58
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=57.14 E-value=12 Score=28.72 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHh
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRT 159 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~ 159 (324)
..++|+|..| .|| ..++.+|...
T Consensus 62 ~~ivv~C~~G-~rS-~~aa~~L~~~ 84 (110)
T COG0607 62 DPIVVYCASG-VRS-AAAAAALKLA 84 (110)
T ss_pred CeEEEEeCCC-CCh-HHHHHHHHHc
Confidence 4899999999 588 5555555544
No 59
>PLN02160 thiosulfate sulfurtransferase
Probab=57.03 E-value=21 Score=29.49 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|||..| .||... +.++...|.+
T Consensus 82 ~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 82 DDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred CcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 3899999999 688544 3333445654
No 60
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=55.41 E-value=28 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
.+|+|+|..|. || +.+ +.+++..|.
T Consensus 67 ~~ivv~C~~G~-rs-~~a-~~~L~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRT-RS-IIG-AQSLINAGL 91 (109)
T ss_pred CeEEEECCCCc-hH-HHH-HHHHHHCCC
Confidence 38999999995 77 333 334455565
No 61
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=52.85 E-value=27 Score=32.94 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhHHHH
Q 020552 136 GVLVHCFAGVSRSAAII 152 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (324)
.|-|=|++|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 48899999999998887
No 62
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=52.34 E-value=26 Score=32.99 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHH----hCC----cEEEEcCCCCchhHHHH
Q 020552 120 YLDVCFDFIDRRR----KEG----GVLVHCFAGVSRSAAII 152 (324)
Q Consensus 120 ~~~~~~~fI~~~~----~~g----~VLVHC~aG~sRS~tvv 152 (324)
.++.+.++++..+ ++| .|-|=|++|..||++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 3444444544443 356 38899999999998886
No 63
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=49.89 E-value=17 Score=33.97 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHHH
Q 020552 136 GVLVHCFAGVSRSAAII 152 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (324)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 48899999999998886
No 64
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=48.86 E-value=82 Score=23.79 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=29.1
Q ss_pred EEEecCC---CCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHH---HHHHHhcCCC
Q 020552 105 MTVPIRD---MESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIIT---AYLMRTEQLS 163 (324)
Q Consensus 105 l~i~i~D---~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~---AyLm~~~~~s 163 (324)
.+||... .........+.............+ .|+|+|..|. |+...+. ++++...|.+
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 4555532 223333344444433333333445 6999997774 5544433 3445555654
No 65
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=48.28 E-value=3 Score=23.09 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=15.9
Q ss_pred cccccccceeeecCceecC
Q 020552 256 YRCKKCRRVVALQENVVDH 274 (324)
Q Consensus 256 ~rCRKCRr~Lf~~~~il~H 274 (324)
|.|..|.+......++..|
T Consensus 1 y~C~~C~~~f~~~~~l~~H 19 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH 19 (23)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHH
Confidence 6899999998887777766
No 66
>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]
Probab=48.00 E-value=7.2 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCccccccccceeeecCceecCCC
Q 020552 253 TPAYRCKKCRRVVALQENVVDHIP 276 (324)
Q Consensus 253 ~~~~rCRKCRr~Lf~~~~il~H~~ 276 (324)
...|+|+.|+.-|+...+++.+.-
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf 36 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSF 36 (122)
T ss_pred CceEeccCCcccccchhhcccccc
Confidence 358999999999999999998864
No 67
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=47.66 E-value=29 Score=26.36 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|+|..| .||. .++..| ...|.+
T Consensus 62 ~~ivv~C~~G-~rs~-~aa~~L-~~~G~~ 87 (100)
T cd01523 62 QEVTVICAKE-GSSQ-FVAELL-AERGYD 87 (100)
T ss_pred CeEEEEcCCC-CcHH-HHHHHH-HHcCce
Confidence 4899999999 4773 333434 455653
No 68
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=47.56 E-value=29 Score=26.17 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|+|..|. |+.+..++..++..|.+
T Consensus 51 ~~ivl~c~~G~-~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 51 TPIVVYGEGGG-EDLAPRAARRLSELGYT 78 (92)
T ss_pred CeEEEEeCCCC-chHHHHHHHHHHHcCcc
Confidence 48999999984 44333334444555543
No 69
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=43.46 E-value=40 Score=26.56 Aligned_cols=26 Identities=23% Similarity=-0.109 Sum_probs=17.3
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.|+|+|..| +++++.++. +++..|++
T Consensus 81 ~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred EEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 799999997 555555544 44555654
No 70
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=42.59 E-value=1.1e+02 Score=24.43 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=13.9
Q ss_pred hhhccCCCeEEEEccc
Q 020552 21 LQNGSSEITHMLSVLS 36 (324)
Q Consensus 21 ~~L~~~gIt~Vl~l~~ 36 (324)
+.|+..||+.||+|..
T Consensus 7 ~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHCCCeEEEEECC
Confidence 4688999999999976
No 71
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=41.76 E-value=66 Score=24.43 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|.|..| .||... +.+|. ..|.+
T Consensus 59 ~~vv~~c~~g-~rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHHH-HHHHH-HcCCc
Confidence 3899999998 577433 34443 45654
No 72
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=41.39 E-value=7.2 Score=27.78 Aligned_cols=12 Identities=50% Similarity=1.281 Sum_probs=9.9
Q ss_pred CCccccccccce
Q 020552 253 TPAYRCKKCRRV 264 (324)
Q Consensus 253 ~~~~rCRKCRr~ 264 (324)
..++||.|||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 468999999984
No 73
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=40.45 E-value=30 Score=26.88 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=24.7
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 020552 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (324)
Q Consensus 138 LVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~R 175 (324)
..||.+. +.++-+ +.++|...++++.+|++.+.+.-
T Consensus 54 ~~~Cf~C-g~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFGC-GKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETTT---EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECCC-CCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 6889854 666544 67789999999999999997653
No 74
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=39.78 E-value=61 Score=26.09 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=18.9
Q ss_pred HhCC-cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 132 RKEG-GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 132 ~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
+.++ .|+|.|..|-.||+.+ +++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 3344 7999997543677533 377777676
No 75
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=39.62 E-value=13 Score=27.29 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=13.2
Q ss_pred ccccccccceeeecCceecCC
Q 020552 255 AYRCKKCRRVVALQENVVDHI 275 (324)
Q Consensus 255 ~~rCRKCRr~Lf~~~~il~H~ 275 (324)
+||| +|+|.|...++.-.|.
T Consensus 3 ifrC-~Cgr~lya~e~~kTkk 22 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGAKTKK 22 (68)
T ss_dssp EEEE-TTS--EEEETT-SEEE
T ss_pred EEEe-cCCCEEEecCCcceeE
Confidence 6899 7999998877766664
No 76
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=39.51 E-value=1.4e+02 Score=24.56 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=36.7
Q ss_pred ceEEEEEecCCCCCcc-HHHHHHHHHHHHHHHHhCCc--EEEEcCCCCchhHHHHHHHHHHhcC
Q 020552 101 KLVRMTVPIRDMESEN-LLDYLDVCFDFIDRRRKEGG--VLVHCFAGVSRSAAIITAYLMRTEQ 161 (324)
Q Consensus 101 ~i~~l~i~i~D~~~~~-l~~~~~~~~~fI~~~~~~g~--VLVHC~aG~sRS~tvv~AyLm~~~~ 161 (324)
.+.-..+++.|...+. ....++.+.+.|.+..+++. .+.-|.+|-=++-++.++|.+..+|
T Consensus 53 ~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 53 EVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 3444455666655433 34444555555666656665 4555778844567777888887766
No 77
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=37.25 E-value=39 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=12.6
Q ss_pred cEEEEcCCCCchhHHHHH
Q 020552 136 GVLVHCFAGVSRSAAIIT 153 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~ 153 (324)
+|+|.|.+|++=| +++.
T Consensus 2 kilvvCg~G~gtS-~ml~ 18 (87)
T cd05567 2 KIVFACDAGMGSS-AMGA 18 (87)
T ss_pred EEEEECCCCccHH-HHHH
Confidence 6899999998843 4443
No 78
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=36.90 E-value=34 Score=31.76 Aligned_cols=28 Identities=43% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020552 142 FAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (324)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (324)
.=|+|||++.+.+-++ .|++.++|.++-
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~fS 186 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARFS 186 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4699999887776554 488999987653
No 79
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=36.76 E-value=41 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 57 ~~iv~~c~~G-~rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 57 ARIVLADDDG-VRADM-TASWL-AQMGWE 82 (95)
T ss_pred CeEEEECCCC-ChHHH-HHHHH-HHcCCE
Confidence 3899999999 47743 33444 555653
No 80
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=36.28 E-value=6.8 Score=27.29 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=13.5
Q ss_pred ccccccccceeeecCce
Q 020552 255 AYRCKKCRRVVALQENV 271 (324)
Q Consensus 255 ~~rCRKCRr~Lf~~~~i 271 (324)
.+||++|..+|+..+..
T Consensus 4 tiRC~~CnKlLa~a~~~ 20 (60)
T COG4416 4 TIRCAKCNKLLAEAEGQ 20 (60)
T ss_pred eeehHHHhHHHHhcccc
Confidence 47999999999766543
No 81
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=35.46 E-value=43 Score=28.52 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.+|+|.|..|..||.. ++++++..|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3899999998767754 45555665643
No 82
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=33.97 E-value=39 Score=31.33 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=19.5
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020552 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (324)
Q Consensus 143 aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (324)
=|+|||++.+.|-|+ .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999877766554 48888888664
No 83
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=33.86 E-value=38 Score=31.74 Aligned_cols=26 Identities=46% Similarity=0.454 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020552 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (324)
Q Consensus 143 aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (324)
=|+|||++.+.+-|+. |++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999998777665543 8899988654
No 84
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=33.68 E-value=7.3 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=17.8
Q ss_pred ccccccccceeeecCceecCC
Q 020552 255 AYRCKKCRRVVALQENVVDHI 275 (324)
Q Consensus 255 ~~rCRKCRr~Lf~~~~il~H~ 275 (324)
.|.|..|.+..-+...++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHH
T ss_pred CCCCCccCCccCChhHHHHHh
Confidence 378999999988888888885
No 85
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=33.44 E-value=19 Score=30.65 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=11.2
Q ss_pred CCccccccccceee
Q 020552 253 TPAYRCKKCRRVVA 266 (324)
Q Consensus 253 ~~~~rCRKCRr~Lf 266 (324)
+-.|||+||+-.|-
T Consensus 138 g~~YrC~~C~gkL~ 151 (156)
T COG3091 138 GEVYRCGKCGGKLV 151 (156)
T ss_pred cceEEeccCCceEE
Confidence 34799999998774
No 86
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=32.08 E-value=2.2e+02 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHh---CCcEEEEcCCCCchhHHHHHHHHHH
Q 020552 120 YLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMR 158 (324)
Q Consensus 120 ~~~~~~~fI~~~~~---~g~VLVHC~aG~sRS~tvv~AyLm~ 158 (324)
.|.+...+|.+.++ ..+|+..|++|+ |- =-+.|||..
T Consensus 155 tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~ 194 (308)
T COG1054 155 TFREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKE 194 (308)
T ss_pred hhhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHH
Confidence 35555566665443 338999999998 64 444455544
No 87
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=31.82 E-value=44 Score=31.19 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020552 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (324)
Q Consensus 143 aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (324)
=|+|||++.+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 699999877666554 48888888654
No 88
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.62 E-value=2e+02 Score=22.19 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHH
Q 020552 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (324)
Q Consensus 121 ~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~ 165 (324)
++.+.++|+...+.|.-++-....-+||..-.+.-| ...|++..
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~ 59 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVD 59 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCC
Confidence 567889999998888544444555678877777777 66786543
No 89
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=31.20 E-value=79 Score=25.00 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
.+|+|+|..| .||..+ +. .+...|.
T Consensus 65 ~~ivv~C~~G-~rs~~a-a~-~L~~~G~ 89 (117)
T cd01522 65 RPVLLLCRSG-NRSIAA-AE-AAAQAGF 89 (117)
T ss_pred CeEEEEcCCC-ccHHHH-HH-HHHHCCC
Confidence 3899999998 577544 23 3344454
No 90
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=30.62 E-value=20 Score=22.85 Aligned_cols=10 Identities=60% Similarity=1.424 Sum_probs=8.3
Q ss_pred CCcccccccc
Q 020552 253 TPAYRCKKCR 262 (324)
Q Consensus 253 ~~~~rCRKCR 262 (324)
.-.||||.||
T Consensus 27 ~qryrC~~C~ 36 (36)
T PF03811_consen 27 HQRYRCKDCR 36 (36)
T ss_pred CEeEecCcCC
Confidence 4579999997
No 91
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=30.14 E-value=65 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=27.2
Q ss_pred hCCcEEEEcCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHH
Q 020552 133 KEGGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLR 172 (324)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s-~~~Al~~vr 172 (324)
..++|+=||..| +-++.||+.....+ -.||+..-.
T Consensus 23 ~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 23 KDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred Hhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 457999999988 34679999998875 888876543
No 92
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.14 E-value=15 Score=26.15 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=9.4
Q ss_pred Cccccccccce
Q 020552 254 PAYRCKKCRRV 264 (324)
Q Consensus 254 ~~~rCRKCRr~ 264 (324)
.++||.|||+.
T Consensus 35 ~I~RC~~CRk~ 45 (59)
T PRK14890 35 IIYRCEKCRKQ 45 (59)
T ss_pred eEeechhHHhc
Confidence 38999999984
No 93
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=30.06 E-value=50 Score=29.31 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHhh
Q 020552 153 TAYLMRTEQLSSEGALESLRQS 174 (324)
Q Consensus 153 ~AyLm~~~~~s~~~Al~~vr~~ 174 (324)
=+.||+.+|+|-++|++++|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4668999999999999999864
No 94
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=29.98 E-value=25 Score=27.57 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.6
Q ss_pred CcEEEEcCCC
Q 020552 135 GGVLVHCFAG 144 (324)
Q Consensus 135 g~VLVHC~aG 144 (324)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 3799999887
No 95
>PRK05320 rhodanese superfamily protein; Provisional
Probab=29.79 E-value=88 Score=28.90 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
..+|+++|..| .|| ..++++|.. .|.+
T Consensus 175 dk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 175 GKTVVSFCTGG-IRC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCeEEEECCCC-HHH-HHHHHHHHH-cCCc
Confidence 34899999999 487 555566654 4543
No 96
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=28.42 E-value=75 Score=23.84 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
+|+|+|..| .||+. ++.+| +..|.
T Consensus 58 ~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 58 RYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 899999877 57744 34444 55564
No 97
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=28.07 E-value=74 Score=23.61 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=10.8
Q ss_pred cEEEEcCCCCchh
Q 020552 136 GVLVHCFAGVSRS 148 (324)
Q Consensus 136 ~VLVHC~aG~sRS 148 (324)
+||+-|.+|++=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5899999999744
No 98
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=27.82 E-value=3.7e+02 Score=25.30 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=53.7
Q ss_pred CCcceEEEEEecCCCCCc-----cHHHHHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHH
Q 020552 98 KDLKLVRMTVPIRDMESE-----NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLR 172 (324)
Q Consensus 98 ~~~~i~~l~i~i~D~~~~-----~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr 172 (324)
.|-.+....+|..|.... +....++..++..+.....+.+=++|..|+. ++- +.+|+... +++++|++.++
T Consensus 32 GGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvH--PaE-~~~l~e~~-~~peea~e~m~ 107 (285)
T COG1831 32 GGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVH--PAE-VSRLAEAG-RSPEEALEEMR 107 (285)
T ss_pred CCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccC--HHH-HHHHHHhc-cChHHHHHHHH
Confidence 344566667777775554 6667777888888888778888899999987 333 36788775 99999988887
Q ss_pred hh
Q 020552 173 QS 174 (324)
Q Consensus 173 ~~ 174 (324)
..
T Consensus 108 ~~ 109 (285)
T COG1831 108 HA 109 (285)
T ss_pred HH
Confidence 53
No 99
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=27.36 E-value=1.5e+02 Score=23.08 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
.|+|+|..| .||... +..| ...|.
T Consensus 60 ~vvlyC~~G-~rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 60 TVKLYCNAG-RQSGMA-KDIL-LDMGY 83 (101)
T ss_pred eEEEEeCCC-HHHHHH-HHHH-HHcCC
Confidence 799999999 477444 3333 34454
No 100
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.08 E-value=52 Score=35.32 Aligned_cols=70 Identities=21% Similarity=0.461 Sum_probs=39.0
Q ss_pred CCCCccccccccceeeecCceecC----------CCCCCCchhhhhhccc--CCCCCCCCCCCCcce-eeccccCCCCC-
Q 020552 251 NRTPAYRCKKCRRVVALQENVVDH----------IPGEGETAFEWHKRKS--GNRFNRSDESECSSI-FVEPLRWMTAG- 316 (324)
Q Consensus 251 ~~~~~~rCRKCRr~Lf~~~~il~H----------~~~~~~~~~~~~k~~~--~~~~~~~~~~~C~s~-Fvepl~WM~~~- 316 (324)
....+.|||.||.=+--=-.++++ ...+-...|.|.--.+ +.. -+...-.|+.+ |+-|.+.|...
T Consensus 214 ~~~~IvRCr~CRtYiNPFV~fid~gr~WrCNlC~~~NdvP~~f~~~~~t~~~~~~-~~RpEl~~s~vE~iAP~eYmlR~P 292 (887)
T KOG1985|consen 214 TSTLIVRCRRCRTYINPFVEFIDQGRRWRCNLCGRVNDVPDDFDWDPLTGAYGDP-YSRPELTSSVVEFIAPSEYMLRPP 292 (887)
T ss_pred cCCceeeehhhhhhcCCeEEecCCCceeeechhhhhcCCcHHhhcCccccccCCc-ccCccccceeEEEecCcccccCCC
Confidence 456789999999866333333433 1222234466652111 111 23345567777 99999999644
Q ss_pred CCCcc
Q 020552 317 KLDTY 321 (324)
Q Consensus 317 ~~~~~ 321 (324)
|+-.|
T Consensus 293 ~Pavy 297 (887)
T KOG1985|consen 293 QPAVY 297 (887)
T ss_pred CCceE
Confidence 34444
No 101
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.02 E-value=1.4e+02 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHH
Q 020552 117 LLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITA 154 (324)
Q Consensus 117 l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~A 154 (324)
+.+.+.++.+.|.+++.++ +|++. |.|+|++++.-
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~ 58 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQH 58 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHH
Confidence 3466788888888888877 56664 77788666533
No 102
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.02 E-value=46 Score=25.77 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=10.8
Q ss_pred CcEEEEcCCCCc
Q 020552 135 GGVLVHCFAGVS 146 (324)
Q Consensus 135 g~VLVHC~aG~s 146 (324)
.+||+-|.+|++
T Consensus 4 ~~ILl~C~~G~s 15 (95)
T TIGR00853 4 TNILLLCAAGMS 15 (95)
T ss_pred cEEEEECCCchh
Confidence 379999999998
No 103
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=26.91 E-value=2.6e+02 Score=25.26 Aligned_cols=53 Identities=32% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHHHHHHHHH----hCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020552 113 ESENLLDYLDVCFDFIDRRR----KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (324)
Q Consensus 113 ~~~~l~~~~~~~~~fI~~~~----~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (324)
..+.+...+..++.|.++.+ ..| .|+|+|++..-| |++|...|++.++.....
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~~~ 187 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKELN 187 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhhee
Confidence 45666777788888877654 356 799998874333 456677788877765443
No 104
>smart00355 ZnF_C2H2 zinc finger.
Probab=26.49 E-value=11 Score=20.55 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=15.4
Q ss_pred cccccccceeeecCceecCC
Q 020552 256 YRCKKCRRVVALQENVVDHI 275 (324)
Q Consensus 256 ~rCRKCRr~Lf~~~~il~H~ 275 (324)
|.|..|...+....++..|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcchhCCHHHHHHHH
Confidence 57899998887777777664
No 105
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=26.38 E-value=1.4e+02 Score=22.94 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
+..++|+|..|. ||.. + +..++..|.+
T Consensus 58 ~~~ivv~c~~g~-~s~~-a-~~~L~~~G~~ 84 (108)
T PRK00162 58 DTPVMVMCYHGN-SSQG-A-AQYLLQQGFD 84 (108)
T ss_pred CCCEEEEeCCCC-CHHH-H-HHHHHHCCch
Confidence 348999999985 6633 2 3344455543
No 106
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.35 E-value=1.3e+02 Score=29.36 Aligned_cols=12 Identities=50% Similarity=0.972 Sum_probs=9.8
Q ss_pred hCC-cEEEEcCCC
Q 020552 133 KEG-GVLVHCFAG 144 (324)
Q Consensus 133 ~~g-~VLVHC~aG 144 (324)
.+| .||.||.+|
T Consensus 165 ~dg~~ILThcnsg 177 (363)
T PRK05772 165 NDGDTVLTQCNAG 177 (363)
T ss_pred CCCCEEEEecCCc
Confidence 456 799999887
No 107
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=26.15 E-value=53 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 020552 142 FAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (324)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~R 175 (324)
..|++|+.+.+++||+.....+-.+ +..+...|
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~sS~~-IE~~sgLR 54 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEASSRE-IERVSGLR 54 (124)
T ss_pred HcCCCchHHHHHHHHhcCcchhhhh-hHHhhcCC
Confidence 3689999999999999875444433 44454444
No 108
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=26.11 E-value=1.5e+02 Score=21.79 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=16.4
Q ss_pred hCC-cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
..+ +|+|+|..| .|| ..+ +.+++..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s-~~a-~~~l~~~G~ 81 (96)
T cd01444 54 DRDRPVVVYCYHG-NSS-AQL-AQALREAGF 81 (96)
T ss_pred CCCCCEEEEeCCC-ChH-HHH-HHHHHHcCC
Confidence 344 899999977 455 333 444455554
No 109
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=26.04 E-value=2.3e+02 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCchhHHHH
Q 020552 135 GGVLVHCFAGVSRSAAII 152 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv 152 (324)
..|+|||..+-.||...+
T Consensus 63 ~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 63 DTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CeEEEEeecCCcchHHHH
Confidence 479999984446775543
No 110
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.71 E-value=73 Score=27.22 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHHHHHHHH--hC-CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHcCCCcC
Q 020552 123 VCFDFIDRRR--KE-GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVN 199 (324)
Q Consensus 123 ~~~~fI~~~~--~~-g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~~~~ 199 (324)
.+.++|.... .. .+|+|-|-.|-+=.-++++|-.+...|+...= --..+.-..+..+..++..++.++.+..
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 4556777776 33 48999999887777778877777777776321 1223334667889999999999986554
No 111
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.69 E-value=12 Score=20.15 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=12.9
Q ss_pred cccccccceeeecCceecC
Q 020552 256 YRCKKCRRVVALQENVVDH 274 (324)
Q Consensus 256 ~rCRKCRr~Lf~~~~il~H 274 (324)
|.|..|.....+...+..|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H 19 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQH 19 (24)
T ss_dssp EE-SSTS-EESSHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHH
Confidence 6799999988777766665
No 112
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=24.88 E-value=74 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
+|+|+|..| .||.. ++.++...|.
T Consensus 63 ~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 63 PFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred eEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 899999988 57643 3455555554
No 113
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=24.68 E-value=37 Score=25.52 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.4
Q ss_pred Cccccccccceeeec
Q 020552 254 PAYRCKKCRRVVALQ 268 (324)
Q Consensus 254 ~~~rCRKCRr~Lf~~ 268 (324)
+.|.||.|+..+.+=
T Consensus 3 i~Y~CRHCg~~IG~i 17 (76)
T PF10955_consen 3 IHYYCRHCGTKIGTI 17 (76)
T ss_pred eEEEecCCCCEEEEe
Confidence 579999999998543
No 114
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=24.38 E-value=1.6e+02 Score=22.85 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.3
Q ss_pred cEEEEcCCCCchhHHH
Q 020552 136 GVLVHCFAGVSRSAAI 151 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tv 151 (324)
.|+|||..|-.||+..
T Consensus 68 ~iv~~C~~~g~rs~~a 83 (113)
T cd01443 68 LAIFYCGSSQGRGPRA 83 (113)
T ss_pred EEEEECCCCCcccHHH
Confidence 7999999865687544
No 115
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=24.28 E-value=1.1e+02 Score=22.19 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (324)
.|+|+|..| .|+ ..+++++...|..
T Consensus 58 ~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 58 PVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred eEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 799999666 465 3334555555654
No 116
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.19 E-value=53 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=25.7
Q ss_pred CceecCCeEEcChHhHhhHhh--hccCCCeEEEE
Q 020552 2 PYLVREHLFIGNISDAADILQ--NGSSEITHMLS 33 (324)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~--L~~~gIt~Vl~ 33 (324)
|+.+.|++|+-++.+. +.+. |++.||+.||-
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~ 46 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIF 46 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEEE
Confidence 7788999999888665 6667 99999999874
No 117
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=23.63 E-value=1e+02 Score=23.35 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
...|+|+|..|. ||..+ |..+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 347999999985 76443 334455565
No 118
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=23.14 E-value=93 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=14.1
Q ss_pred cEEEEcC-CCCchhHHHHHHHHHH
Q 020552 136 GVLVHCF-AGVSRSAAIITAYLMR 158 (324)
Q Consensus 136 ~VLVHC~-aG~sRS~tvv~AyLm~ 158 (324)
.|+|||. .| .||+. ++.+|..
T Consensus 70 ~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 70 VLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred EEEEECCCcc-ccHHH-HHHHHHH
Confidence 7999997 66 67744 4445544
No 119
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=23.00 E-value=1.1e+02 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020552 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (324)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (324)
..|+|+|..|. ||... +- .+...|.
T Consensus 73 ~~ivv~C~~G~-rs~~a-a~-~L~~~G~ 97 (122)
T cd01526 73 SPIYVVCRRGN-DSQTA-VR-KLKELGL 97 (122)
T ss_pred CcEEEECCCCC-cHHHH-HH-HHHHcCC
Confidence 38999999994 87433 23 3455566
No 120
>PRK04860 hypothetical protein; Provisional
Probab=22.71 E-value=48 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.886 Sum_probs=12.2
Q ss_pred CCccccccccceeeecC
Q 020552 253 TPAYRCKKCRRVVALQE 269 (324)
Q Consensus 253 ~~~~rCRKCRr~Lf~~~ 269 (324)
...|+|++|+..|....
T Consensus 141 ~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 141 EAVYRCRRCGETLVFKG 157 (160)
T ss_pred CccEECCCCCceeEEec
Confidence 34599999988876543
No 121
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.67 E-value=1.8e+02 Score=26.06 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHh
Q 020552 120 YLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (324)
Q Consensus 120 ~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~ 159 (324)
.|.++++.|-+. .|+|+|- |+|||+-++=++-|+.
T Consensus 27 ~~~~a~~~i~~~--~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 27 DFVRAVELILEC--KGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHhc--CCcEEEE---cCChhHHHHHHHHHHH
Confidence 455555555444 6899885 9999988886665554
No 122
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.65 E-value=1.1e+02 Score=28.17 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=22.0
Q ss_pred eEEcCh-HhHhhHhhhccCCCeEEEEccc
Q 020552 9 LFIGNI-SDAADILQNGSSEITHMLSVLS 36 (324)
Q Consensus 9 LylG~~-~~a~d~~~L~~~gIt~Vl~l~~ 36 (324)
+..|.+ ....-.+++++.+|+.|||.+-
T Consensus 46 v~~G~l~~~~~l~~~l~~~~i~~VIDATH 74 (248)
T PRK08057 46 VRVGGFGGAEGLAAYLREEGIDLVIDATH 74 (248)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCC
Confidence 678888 4455566788899999999976
No 123
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=22.51 E-value=35 Score=22.61 Aligned_cols=11 Identities=55% Similarity=1.310 Sum_probs=9.3
Q ss_pred CCccccccccc
Q 020552 253 TPAYRCKKCRR 263 (324)
Q Consensus 253 ~~~~rCRKCRr 263 (324)
...|+|++||+
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 46899999986
No 124
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.50 E-value=42 Score=21.15 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=10.8
Q ss_pred CCcccccccccee
Q 020552 253 TPAYRCKKCRRVV 265 (324)
Q Consensus 253 ~~~~rCRKCRr~L 265 (324)
-+.|+|++|+...
T Consensus 3 ~Y~y~C~~Cg~~f 15 (41)
T smart00834 3 IYEYRCEDCGHTF 15 (41)
T ss_pred CEEEEcCCCCCEE
Confidence 4679999999965
No 125
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=22.45 E-value=47 Score=27.33 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=16.7
Q ss_pred CCCccccccccceeeecCcee
Q 020552 252 RTPAYRCKKCRRVVALQENVV 272 (324)
Q Consensus 252 ~~~~~rCRKCRr~Lf~~~~il 272 (324)
...+|.|+.|...||.+..=.
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~Kf 54 (124)
T PF01641_consen 34 EEGIYVCAVCGTPLFSSDTKF 54 (124)
T ss_dssp SSEEEEETTTS-EEEEGGGEE
T ss_pred CCEEEEcCCCCCccccCcccc
Confidence 356899999999999987654
No 126
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=22.45 E-value=33 Score=34.09 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=11.7
Q ss_pred ccccccccceeeec
Q 020552 255 AYRCKKCRRVVALQ 268 (324)
Q Consensus 255 ~~rCRKCRr~Lf~~ 268 (324)
-||||||++..-..
T Consensus 367 g~rC~kCg~~~~~~ 380 (421)
T COG1571 367 GFRCKKCGTRARET 380 (421)
T ss_pred CcccccccccCCcc
Confidence 89999999987544
No 127
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=22.32 E-value=69 Score=25.37 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=9.8
Q ss_pred cEEEEcCCCCc
Q 020552 136 GVLVHCFAGVS 146 (324)
Q Consensus 136 ~VLVHC~aG~s 146 (324)
+||+-|.+|+|
T Consensus 3 kILlvCg~G~S 13 (104)
T PRK09590 3 KALIICAAGMS 13 (104)
T ss_pred EEEEECCCchH
Confidence 69999999994
No 128
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=22.22 E-value=3e+02 Score=26.48 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=23.6
Q ss_pred CCceecCCeEEcC--hHhHhhHhh----hccCCCeEEEEccc
Q 020552 1 MPYLVREHLFIGN--ISDAADILQ----NGSSEITHMLSVLS 36 (324)
Q Consensus 1 ~p~~I~~~LylG~--~~~a~d~~~----L~~~gIt~Vl~l~~ 36 (324)
+|.-|+.++.++. .....+... -..-|||+|++...
T Consensus 13 lPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~ 54 (374)
T cd01317 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPN 54 (374)
T ss_pred ecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCC
Confidence 5778888888765 322333333 33468999999853
No 129
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=21.70 E-value=1e+02 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCC-cEEEEcC
Q 020552 123 VCFDFIDRRRKEG-GVLVHCF 142 (324)
Q Consensus 123 ~~~~fI~~~~~~g-~VLVHC~ 142 (324)
.++.+++++...| +|||+|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 7889999999998 9999994
No 130
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=21.44 E-value=1.2e+02 Score=28.77 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=25.9
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 020552 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (324)
Q Consensus 138 LVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~ 174 (324)
+++..+|-| +++++++.|.. |++.+++++.+.+.
T Consensus 32 ~fD~i~GTS-tGgiIA~~la~--g~s~~e~~~~y~~~ 65 (312)
T cd07212 32 LFDWIAGTS-TGGILALALLH--GKSLREARRLYLRM 65 (312)
T ss_pred hccEEEeeC-hHHHHHHHHHc--CCCHHHHHHHHHHh
Confidence 689999987 56666665554 89999999886654
No 131
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=21.35 E-value=1.5e+02 Score=28.68 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.9
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhhCCcccCC
Q 020552 136 GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPN 181 (324)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn 181 (324)
..++...+|.| ++++++++|. .|++.++.+++++...+.+-+.
T Consensus 39 ~d~FDlIaGTS-tGgIIAa~la--~g~s~~ei~~~y~~~~~~iF~~ 81 (344)
T cd07217 39 GDYFDFVGGTS-TGSIIAACIA--LGMSVTDLLSFYTLNGVNMFDK 81 (344)
T ss_pred cccccEEEEec-HHHHHHHHHH--cCCCHHHHHHHHHhhhhhhcCc
Confidence 35688899987 6777777764 4899999999987765545443
No 132
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.23 E-value=1.5e+02 Score=28.61 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=13.0
Q ss_pred hCC-cEEEEcCCCCchhH
Q 020552 133 KEG-GVLVHCFAGVSRSA 149 (324)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~ 149 (324)
..| .||.||.+|..+++
T Consensus 146 ~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 146 EDGDTVLTHCNAGRLACV 163 (339)
T ss_pred cCCCEEEEecCCcccccc
Confidence 456 79999999976653
No 133
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=20.52 E-value=1.2e+02 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEcCCC
Q 020552 120 YLDVCFDFIDRRRKEG-GVLVHCFAG 144 (324)
Q Consensus 120 ~~~~~~~fI~~~~~~g-~VLVHC~aG 144 (324)
...-++..++++.++| +|+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3567889999999999 899999543
No 134
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=1.9e+02 Score=26.19 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 020552 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (324)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~ 174 (324)
+|+|+|||..= +-.-+++-+||....++-++++.++++.
T Consensus 185 NGriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 185 NGRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred CceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 67999999764 4556677789999999999998777653
Done!