Query 020556
Match_columns 324
No_of_seqs 173 out of 1320
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 1.1E-77 2.3E-82 573.5 26.1 227 96-324 2-229 (314)
2 PRK02812 ribose-phosphate pyro 100.0 3.2E-68 6.9E-73 515.1 26.4 243 80-324 3-245 (330)
3 PRK04923 ribose-phosphate pyro 100.0 5.7E-68 1.2E-72 511.3 26.0 227 97-324 5-232 (319)
4 PRK00553 ribose-phosphate pyro 100.0 7.1E-68 1.5E-72 513.1 26.6 228 95-324 6-233 (332)
5 PTZ00145 phosphoribosylpyropho 100.0 8.9E-68 1.9E-72 525.7 25.6 227 96-324 117-350 (439)
6 PRK02269 ribose-phosphate pyro 100.0 1.7E-67 3.6E-72 508.2 25.1 227 97-324 4-232 (320)
7 PRK02458 ribose-phosphate pyro 100.0 1.2E-66 2.5E-71 503.0 25.9 228 95-324 6-233 (323)
8 KOG1448 Ribose-phosphate pyrop 100.0 3.4E-66 7.4E-71 487.5 19.4 227 97-324 2-229 (316)
9 PRK07199 phosphoribosylpyropho 100.0 5.6E-65 1.2E-69 487.0 25.4 220 99-324 3-226 (301)
10 PRK03092 ribose-phosphate pyro 100.0 1.5E-64 3.2E-69 484.7 23.6 214 110-324 1-216 (304)
11 PRK01259 ribose-phosphate pyro 100.0 3.3E-64 7.2E-69 483.1 25.5 223 99-324 1-223 (309)
12 PRK06827 phosphoribosylpyropho 100.0 9.3E-64 2E-68 491.6 24.9 226 96-324 6-279 (382)
13 PLN02369 ribose-phosphate pyro 100.0 2.4E-63 5.3E-68 475.9 24.0 217 108-324 1-217 (302)
14 PLN02297 ribose-phosphate pyro 100.0 4.1E-63 8.9E-68 478.3 24.9 225 93-324 11-245 (326)
15 PRK00934 ribose-phosphate pyro 100.0 1.8E-62 3.9E-67 466.1 25.1 219 100-324 1-219 (285)
16 TIGR01251 ribP_PPkin ribose-ph 100.0 2.1E-62 4.6E-67 469.9 25.2 223 99-324 1-225 (308)
17 KOG1503 Phosphoribosylpyrophos 100.0 2.9E-50 6.3E-55 371.3 20.7 228 92-321 2-259 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 1.7E-42 3.8E-47 290.3 14.7 116 99-215 1-116 (116)
19 PRK13811 orotate phosphoribosy 99.6 8.1E-15 1.8E-19 130.1 8.6 116 205-324 3-119 (170)
20 PF14572 Pribosyl_synth: Phosp 99.5 5.5E-15 1.2E-19 133.1 4.6 67 257-324 2-98 (184)
21 PRK13812 orotate phosphoribosy 99.1 7.5E-10 1.6E-14 99.1 9.8 115 204-324 3-122 (176)
22 TIGR01203 HGPRTase hypoxanthin 98.8 5.3E-09 1.2E-13 92.6 5.4 79 244-324 13-99 (166)
23 TIGR01251 ribP_PPkin ribose-ph 98.8 3.7E-07 8E-12 88.2 17.9 135 98-253 161-297 (308)
24 PRK13809 orotate phosphoribosy 98.7 6E-08 1.3E-12 89.1 9.9 79 245-324 54-133 (206)
25 PRK07322 adenine phosphoribosy 98.7 2.7E-08 5.9E-13 88.9 7.5 97 226-324 17-135 (178)
26 PRK12560 adenine phosphoribosy 98.7 2.3E-08 5E-13 90.3 6.5 105 218-324 11-129 (187)
27 PRK09162 hypoxanthine-guanine 98.7 3.5E-08 7.5E-13 88.5 6.6 79 244-324 27-112 (181)
28 PRK02304 adenine phosphoribosy 98.7 6.9E-08 1.5E-12 85.7 8.2 66 258-324 51-129 (175)
29 PLN02293 adenine phosphoribosy 98.7 8.7E-08 1.9E-12 86.7 8.6 66 258-324 62-140 (187)
30 PRK15423 hypoxanthine phosphor 98.6 9.4E-08 2E-12 85.9 7.5 80 244-324 19-107 (178)
31 PRK00455 pyrE orotate phosphor 98.6 2.1E-07 4.5E-12 84.5 9.2 113 204-324 5-128 (202)
32 PRK05205 bifunctional pyrimidi 98.6 7.6E-08 1.7E-12 85.7 5.6 80 245-324 18-110 (176)
33 TIGR01367 pyrE_Therm orotate p 98.5 3.4E-07 7.5E-12 82.7 8.3 61 258-324 58-120 (187)
34 TIGR00336 pyrE orotate phospho 98.5 2E-07 4.4E-12 82.8 6.2 65 257-324 53-123 (173)
35 PF00156 Pribosyltran: Phospho 98.4 4.3E-07 9.4E-12 74.5 6.2 78 244-324 15-103 (125)
36 PRK02277 orotate phosphoribosy 98.4 6.7E-07 1.4E-11 81.4 7.2 66 258-324 85-155 (200)
37 PRK00129 upp uracil phosphorib 98.4 6E-07 1.3E-11 82.2 6.5 67 258-324 70-139 (209)
38 TIGR01090 apt adenine phosphor 98.4 8.8E-07 1.9E-11 78.3 6.9 66 258-324 46-124 (169)
39 PLN02238 hypoxanthine phosphor 98.3 1.4E-06 3E-11 78.9 7.2 77 246-324 24-112 (189)
40 PRK08525 amidophosphoribosyltr 98.2 2.9E-06 6.3E-11 86.1 7.3 78 245-324 263-355 (445)
41 PRK08558 adenine phosphoribosy 98.2 6.2E-06 1.3E-10 77.3 8.5 79 245-324 98-191 (238)
42 TIGR01744 XPRTase xanthine pho 98.1 1.1E-05 2.3E-10 73.4 8.6 80 244-324 36-132 (191)
43 PRK09219 xanthine phosphoribos 98.1 1.3E-05 2.8E-10 72.8 8.7 79 245-324 37-132 (189)
44 PRK13810 orotate phosphoribosy 98.0 3.1E-05 6.6E-10 70.2 9.9 64 258-324 73-137 (187)
45 COG0503 Apt Adenine/guanine ph 98.0 1.7E-05 3.6E-10 71.3 8.1 66 258-324 53-131 (179)
46 TIGR01743 purR_Bsub pur operon 98.0 2.9E-05 6.2E-10 74.2 8.5 67 257-324 127-209 (268)
47 PRK05793 amidophosphoribosyltr 97.9 1.3E-05 2.7E-10 82.0 5.1 78 245-324 276-368 (469)
48 COG0461 PyrE Orotate phosphori 97.9 0.00011 2.4E-09 67.6 10.3 65 258-324 61-127 (201)
49 PRK05500 bifunctional orotidin 97.8 8.3E-05 1.8E-09 76.3 9.5 149 159-324 248-408 (477)
50 PRK09213 pur operon repressor; 97.8 7.9E-05 1.7E-09 71.4 8.6 78 246-324 118-211 (271)
51 TIGR01091 upp uracil phosphori 97.7 6.4E-05 1.4E-09 68.8 6.2 67 258-324 68-137 (207)
52 PRK06031 phosphoribosyltransfe 97.7 0.00013 2.8E-09 68.4 8.2 80 245-324 71-169 (233)
53 PRK09177 xanthine-guanine phos 97.7 0.00011 2.4E-09 64.6 7.2 75 245-324 21-99 (156)
54 COG0634 Hpt Hypoxanthine-guani 97.7 0.00018 3.9E-09 64.8 8.6 80 244-324 22-108 (178)
55 PRK08341 amidophosphoribosyltr 97.7 5.1E-05 1.1E-09 77.2 5.4 78 245-324 259-349 (442)
56 PTZ00271 hypoxanthine-guanine 97.6 0.0001 2.2E-09 68.2 5.6 67 258-324 57-133 (211)
57 COG0856 Orotate phosphoribosyl 97.5 0.00031 6.6E-09 63.5 7.2 78 244-324 73-156 (203)
58 PTZ00149 hypoxanthine phosphor 97.4 0.00031 6.7E-09 66.3 6.4 78 246-324 70-165 (241)
59 COG2236 Predicted phosphoribos 97.4 0.00059 1.3E-08 62.4 7.4 79 244-324 17-102 (192)
60 PRK00934 ribose-phosphate pyro 97.3 0.0091 2E-07 57.3 15.3 125 99-251 157-284 (285)
61 PRK07199 phosphoribosylpyropho 97.3 0.015 3.1E-07 56.5 16.5 129 98-252 162-292 (301)
62 PRK11595 DNA utilization prote 97.2 5.4E-05 1.2E-09 70.1 -0.8 23 302-324 180-202 (227)
63 PRK02458 ribose-phosphate pyro 97.1 0.026 5.6E-07 55.4 16.8 136 98-253 170-306 (323)
64 COG0462 PrsA Phosphoribosylpyr 97.1 0.013 2.8E-07 57.4 14.5 137 98-253 164-303 (314)
65 PRK03092 ribose-phosphate pyro 97.1 0.023 5E-07 55.2 16.1 136 97-253 149-290 (304)
66 PRK04923 ribose-phosphate pyro 97.1 0.024 5.1E-07 55.6 15.9 139 97-253 167-307 (319)
67 PLN02440 amidophosphoribosyltr 97.1 0.00069 1.5E-08 69.6 5.4 78 245-324 263-355 (479)
68 PRK02269 ribose-phosphate pyro 97.0 0.049 1.1E-06 53.3 17.0 136 99-253 168-306 (320)
69 TIGR01134 purF amidophosphorib 96.9 0.0014 3.1E-08 66.6 6.0 78 245-324 261-353 (442)
70 PLN02369 ribose-phosphate pyro 96.9 0.048 1E-06 53.0 15.9 136 97-253 151-291 (302)
71 PRK01259 ribose-phosphate pyro 96.8 0.063 1.4E-06 52.3 16.0 137 99-253 161-298 (309)
72 PRK09123 amidophosphoribosyltr 96.7 0.0054 1.2E-07 63.1 7.9 79 244-324 282-375 (479)
73 PTZ00145 phosphoribosylpyropho 96.6 0.14 2.9E-06 52.5 16.9 137 98-253 280-425 (439)
74 PRK02812 ribose-phosphate pyro 96.5 0.13 2.8E-06 50.7 15.9 135 98-253 180-319 (330)
75 PRK00553 ribose-phosphate pyro 96.4 0.18 4E-06 49.7 16.3 137 98-252 169-310 (332)
76 KOG3367 Hypoxanthine-guanine p 96.3 0.0075 1.6E-07 54.6 5.6 68 256-324 58-140 (216)
77 COG2065 PyrR Pyrimidine operon 96.3 0.015 3.2E-07 52.3 7.4 80 245-324 18-111 (179)
78 PRK06827 phosphoribosylpyropho 96.2 0.18 3.8E-06 50.8 15.0 134 99-252 210-356 (382)
79 PRK06388 amidophosphoribosyltr 95.8 0.021 4.6E-07 58.8 6.9 78 245-324 279-371 (474)
80 PRK09246 amidophosphoribosyltr 95.8 0.019 4.1E-07 59.5 6.5 65 258-324 294-373 (501)
81 PRK07349 amidophosphoribosyltr 95.4 0.015 3.2E-07 60.3 4.1 79 244-324 299-392 (500)
82 PRK06781 amidophosphoribosyltr 95.2 0.045 9.8E-07 56.4 6.8 78 245-324 271-363 (471)
83 PRK07631 amidophosphoribosyltr 94.8 0.045 9.8E-07 56.4 5.5 78 245-324 271-363 (475)
84 PRK07272 amidophosphoribosyltr 94.6 0.054 1.2E-06 56.0 5.5 79 244-324 272-365 (484)
85 TIGR00201 comF comF family pro 94.3 0.017 3.7E-07 51.9 1.0 19 306-324 149-167 (190)
86 PRK07847 amidophosphoribosyltr 94.2 0.071 1.5E-06 55.5 5.3 78 245-324 290-382 (510)
87 KOG1712 Adenine phosphoribosyl 93.8 0.17 3.8E-06 45.5 6.3 80 243-324 45-137 (183)
88 PLN02297 ribose-phosphate pyro 93.3 3.3 7.1E-05 41.0 14.9 131 98-250 184-324 (326)
89 PRK09162 hypoxanthine-guanine 92.2 1.8 3.8E-05 38.8 10.5 83 98-184 42-132 (181)
90 COG1926 Predicted phosphoribos 91.7 0.63 1.4E-05 43.5 7.1 45 242-288 10-54 (220)
91 PF14572 Pribosyl_synth: Phosp 91.3 0.7 1.5E-05 42.2 6.9 98 137-252 75-172 (184)
92 PRK15423 hypoxanthine phosphor 91.0 4 8.7E-05 36.7 11.5 82 99-184 37-127 (178)
93 PF13793 Pribosyltran_N: N-ter 90.9 1.1 2.3E-05 37.7 7.2 56 262-319 2-57 (116)
94 TIGR01203 HGPRTase hypoxanthin 90.2 4 8.6E-05 36.1 10.6 83 98-184 27-119 (166)
95 PRK08525 amidophosphoribosyltr 89.3 2.1 4.6E-05 43.8 9.2 83 98-184 277-375 (445)
96 PLN02440 amidophosphoribosyltr 87.3 4.3 9.3E-05 42.0 10.1 122 97-225 276-421 (479)
97 TIGR01091 upp uracil phosphori 87.0 7.6 0.00016 35.5 10.5 84 98-185 69-158 (207)
98 PLN02238 hypoxanthine phosphor 86.6 12 0.00027 33.8 11.6 77 104-184 43-132 (189)
99 PRK00129 upp uracil phosphorib 86.5 8.9 0.00019 35.1 10.7 84 98-185 71-160 (209)
100 COG1040 ComFC Predicted amidop 86.4 0.3 6.5E-06 45.5 1.0 23 302-324 176-199 (225)
101 PRK07272 amidophosphoribosyltr 85.8 2.6 5.7E-05 43.8 7.6 121 98-225 287-431 (484)
102 PRK13811 orotate phosphoribosy 85.5 6.2 0.00014 35.0 8.9 78 104-187 64-141 (170)
103 TIGR01134 purF amidophosphorib 84.6 6.5 0.00014 40.2 9.7 117 98-224 275-418 (442)
104 PF06574 FAD_syn: FAD syntheta 84.3 2 4.4E-05 37.8 5.2 82 200-293 60-148 (157)
105 PLN02501 digalactosyldiacylgly 84.0 13 0.00028 40.9 11.9 171 101-281 281-460 (794)
106 PRK02304 adenine phosphoribosy 84.0 16 0.00035 32.2 10.8 73 104-180 59-145 (175)
107 PRK03803 murD UDP-N-acetylmura 83.2 5.7 0.00012 39.9 8.5 152 109-278 279-434 (448)
108 TIGR01367 pyrE_Therm orotate p 82.7 19 0.00042 32.4 11.0 77 98-181 60-137 (187)
109 PRK05793 amidophosphoribosyltr 82.6 7.6 0.00016 40.1 9.3 123 98-225 290-434 (469)
110 PF14681 UPRTase: Uracil phosp 82.5 3.6 7.8E-05 37.7 6.2 67 258-324 67-136 (207)
111 COG2179 Predicted hydrolase of 82.5 8.5 0.00018 34.9 8.4 107 208-324 20-146 (175)
112 PRK08341 amidophosphoribosyltr 81.4 6.9 0.00015 40.2 8.4 83 98-184 273-369 (442)
113 PTZ00271 hypoxanthine-guanine 81.2 19 0.00041 33.5 10.5 83 98-184 58-153 (211)
114 PLN02541 uracil phosphoribosyl 81.2 3.8 8.2E-05 38.9 6.0 64 260-324 104-172 (244)
115 PRK14093 UDP-N-acetylmuramoyla 80.9 19 0.0004 36.9 11.4 105 109-227 297-412 (479)
116 PTZ00149 hypoxanthine phosphor 80.4 24 0.00053 33.5 11.1 84 97-184 81-185 (241)
117 COG0634 Hpt Hypoxanthine-guani 80.3 19 0.00041 32.8 9.9 83 97-183 35-127 (178)
118 PRK00455 pyrE orotate phosphor 80.2 18 0.00038 32.8 9.9 79 98-181 66-145 (202)
119 PRK02277 orotate phosphoribosy 80.0 13 0.00029 33.7 9.0 83 98-184 87-175 (200)
120 TIGR01090 apt adenine phosphor 80.0 13 0.00029 32.6 8.7 74 105-182 55-142 (169)
121 PF00156 Pribosyltran: Phospho 79.5 12 0.00025 30.2 7.7 85 96-184 27-123 (125)
122 PRK13812 orotate phosphoribosy 78.8 13 0.00028 33.3 8.4 72 104-180 66-138 (176)
123 PLN02293 adenine phosphoribosy 78.1 27 0.00059 31.6 10.4 74 104-181 70-157 (187)
124 TIGR01143 murF UDP-N-acetylmur 78.1 15 0.00033 36.6 9.5 126 109-252 260-392 (417)
125 PRK05205 bifunctional pyrimidi 76.9 30 0.00064 30.6 10.1 83 98-184 32-131 (176)
126 PRK09123 amidophosphoribosyltr 75.3 29 0.00063 36.0 10.9 118 99-223 298-439 (479)
127 TIGR00336 pyrE orotate phospho 73.4 29 0.00062 30.7 9.1 78 105-187 63-145 (173)
128 COG0034 PurF Glutamine phospho 72.9 11 0.00023 39.1 6.9 116 99-225 286-429 (470)
129 PRK09246 amidophosphoribosyltr 72.8 16 0.00034 38.1 8.3 113 105-225 302-439 (501)
130 cd05014 SIS_Kpsf KpsF-like pro 71.2 27 0.00058 28.3 7.8 79 98-182 2-80 (128)
131 PRK03815 murD UDP-N-acetylmura 70.7 44 0.00095 33.7 10.7 150 108-278 237-389 (401)
132 TIGR02990 ectoine_eutA ectoine 70.1 51 0.0011 31.0 10.4 100 167-286 110-210 (239)
133 PRK07349 amidophosphoribosyltr 70.0 18 0.00039 37.9 8.0 115 105-224 321-457 (500)
134 COG0034 PurF Glutamine phospho 68.9 4.8 0.0001 41.6 3.4 78 245-324 271-363 (470)
135 PRK12560 adenine phosphoribosy 68.3 25 0.00055 31.7 7.7 73 105-181 60-146 (187)
136 PRK11595 DNA utilization prote 66.9 14 0.00031 34.0 5.9 72 108-183 135-221 (227)
137 PRK06781 amidophosphoribosyltr 64.0 25 0.00053 36.5 7.5 111 105-223 292-427 (471)
138 PRK02006 murD UDP-N-acetylmura 63.8 34 0.00073 35.0 8.5 148 109-278 326-478 (498)
139 cd04234 AAK_AK AAK_AK: Amino A 62.4 39 0.00084 31.0 7.9 53 145-225 30-82 (227)
140 PRK08558 adenine phosphoribosy 62.3 69 0.0015 30.1 9.6 79 98-180 113-207 (238)
141 PF01012 ETF: Electron transfe 61.8 1E+02 0.0022 26.4 11.6 102 158-281 13-114 (164)
142 PRK05627 bifunctional riboflav 61.3 40 0.00087 32.9 8.1 80 201-292 69-155 (305)
143 COG2185 Sbm Methylmalonyl-CoA 61.0 19 0.00042 31.7 5.2 66 109-182 30-97 (143)
144 PRK02472 murD UDP-N-acetylmura 60.8 55 0.0012 32.7 9.2 148 107-277 279-431 (447)
145 PRK07322 adenine phosphoribosy 60.6 85 0.0018 27.9 9.5 86 104-194 60-164 (178)
146 PRK07631 amidophosphoribosyltr 59.2 23 0.0005 36.8 6.3 75 106-184 293-383 (475)
147 PRK05569 flavodoxin; Provision 58.5 1.1E+02 0.0023 25.4 11.1 102 99-217 4-113 (141)
148 PRK08105 flavodoxin; Provision 57.3 84 0.0018 27.1 8.6 109 98-220 3-120 (149)
149 PRK08564 5'-methylthioadenosin 56.9 12 0.00026 35.9 3.6 78 96-182 7-89 (267)
150 KOG1448 Ribose-phosphate pyrop 56.3 51 0.0011 32.6 7.7 129 52-190 124-255 (316)
151 PRK13809 orotate phosphoribosy 56.1 47 0.001 30.6 7.2 72 105-180 76-149 (206)
152 PF01380 SIS: SIS domain SIS d 55.8 8.4 0.00018 31.1 2.0 82 96-182 5-86 (131)
153 COG0856 Orotate phosphoribosyl 55.7 1.2E+02 0.0025 28.1 9.4 95 84-182 72-174 (203)
154 COG0770 MurF UDP-N-acetylmuram 55.6 87 0.0019 32.4 9.8 145 107-266 287-436 (451)
155 TIGR00656 asp_kin_monofn aspar 54.3 1.5E+02 0.0032 29.5 10.9 123 145-287 32-171 (401)
156 PRK05568 flavodoxin; Provision 54.1 1.2E+02 0.0026 25.1 8.9 99 102-217 9-112 (142)
157 KOG0572 Glutamine phosphoribos 53.4 7.8 0.00017 39.5 1.7 134 181-324 210-371 (474)
158 PRK13810 orotate phosphoribosy 53.3 60 0.0013 29.4 7.3 79 105-188 82-160 (187)
159 cd05710 SIS_1 A subgroup of th 53.3 24 0.00053 29.0 4.5 76 103-184 5-81 (120)
160 cd02064 FAD_synthetase_N FAD s 53.0 79 0.0017 28.0 8.0 78 202-292 56-140 (180)
161 COG0035 Upp Uracil phosphoribo 53.0 32 0.00069 32.2 5.6 66 258-324 70-139 (210)
162 PRK04663 murD UDP-N-acetylmura 53.0 1E+02 0.0022 31.0 9.7 148 109-277 275-424 (438)
163 COG0196 RibF FAD synthase [Coe 52.6 1E+02 0.0022 30.4 9.2 97 181-293 49-156 (304)
164 PRK07823 5'-methylthioadenosin 52.6 21 0.00045 34.3 4.4 81 93-182 2-86 (264)
165 PRK10773 murF UDP-N-acetylmura 52.5 1E+02 0.0022 31.3 9.6 130 109-253 288-421 (453)
166 PRK04308 murD UDP-N-acetylmura 51.3 1.1E+02 0.0025 30.6 9.7 149 109-279 281-434 (445)
167 PRK06756 flavodoxin; Provision 50.4 1E+02 0.0022 25.9 8.0 108 99-219 4-118 (148)
168 PRK07847 amidophosphoribosyltr 49.9 83 0.0018 33.1 8.7 113 105-225 311-448 (510)
169 PF06300 Tsp45I: Tsp45I type I 47.6 3.3 7.2E-05 39.3 -1.7 54 159-220 53-106 (261)
170 TIGR00083 ribF riboflavin kina 46.3 2.2E+02 0.0047 27.6 10.4 79 201-291 53-138 (288)
171 TIGR01087 murD UDP-N-acetylmur 45.3 89 0.0019 31.1 7.8 148 109-278 270-422 (433)
172 PRK01710 murD UDP-N-acetylmura 45.0 67 0.0015 32.5 7.0 147 109-278 289-446 (458)
173 PRK11930 putative bifunctional 44.8 1.8E+02 0.004 31.9 10.7 141 109-263 292-438 (822)
174 TIGR00393 kpsF KpsF/GutQ famil 44.5 72 0.0016 29.4 6.6 79 98-182 2-80 (268)
175 PF15609 PRTase_2: Phosphoribo 44.2 9.8 0.00021 35.0 0.8 81 241-324 38-136 (191)
176 PF14681 UPRTase: Uracil phosp 43.8 2.1E+02 0.0045 26.1 9.4 81 98-182 68-156 (207)
177 COG2403 Predicted GTPase [Gene 42.0 77 0.0017 32.6 6.7 57 256-318 268-328 (449)
178 PF02633 Creatininase: Creatin 41.5 84 0.0018 29.0 6.5 66 159-227 37-111 (237)
179 PRK08373 aspartate kinase; Val 41.0 1.8E+02 0.0039 29.0 9.1 80 145-225 32-134 (341)
180 PRK09177 xanthine-guanine phos 38.8 1.4E+02 0.003 26.1 7.1 59 98-156 33-95 (156)
181 PRK09271 flavodoxin; Provision 38.5 2.4E+02 0.0052 24.3 8.6 54 99-153 3-59 (160)
182 cd05008 SIS_GlmS_GlmD_1 SIS (S 38.3 1.1E+02 0.0025 24.5 6.2 77 99-181 2-78 (126)
183 PRK06388 amidophosphoribosyltr 38.2 1.8E+02 0.0038 30.4 8.9 75 106-184 301-391 (474)
184 PLN02640 glucose-6-phosphate 1 38.0 18 0.00039 38.5 1.6 15 1-15 1-15 (573)
185 PF04914 DltD_C: DltD C-termin 37.9 85 0.0018 27.0 5.5 74 160-242 33-113 (130)
186 PRK06031 phosphoribosyltransfe 37.7 1.5E+02 0.0032 27.9 7.6 72 104-179 92-184 (233)
187 PRK06703 flavodoxin; Provision 37.4 2.5E+02 0.0054 23.6 9.2 107 99-218 4-116 (151)
188 TIGR02068 cya_phycin_syn cyano 37.2 4.7E+02 0.01 29.2 12.5 101 107-226 687-795 (864)
189 PRK09219 xanthine phosphoribos 36.9 2E+02 0.0044 26.0 8.2 70 105-178 59-146 (189)
190 PRK15482 transcriptional regul 36.8 73 0.0016 30.0 5.4 80 96-181 135-214 (285)
191 PRK09004 FMN-binding protein M 36.8 2.3E+02 0.005 24.2 8.1 108 98-222 3-120 (146)
192 cd01522 RHOD_1 Member of the R 36.4 2.3E+02 0.005 22.9 8.3 78 202-281 1-88 (117)
193 cd01831 Endoglucanase_E_like E 36.3 2.7E+02 0.0058 23.6 13.0 58 164-227 82-140 (169)
194 PRK06242 flavodoxin; Provision 36.2 2.5E+02 0.0055 23.3 9.8 96 106-224 14-111 (150)
195 PRK11070 ssDNA exonuclease Rec 34.7 1.9E+02 0.0042 30.8 8.7 72 145-228 69-140 (575)
196 PRK07308 flavodoxin; Validated 34.4 2.4E+02 0.0051 23.7 7.7 106 99-218 4-116 (146)
197 PRK00683 murD UDP-N-acetylmura 34.4 2.3E+02 0.005 28.3 8.8 148 109-278 250-402 (418)
198 PLN02489 homocysteine S-methyl 34.2 4.7E+02 0.01 25.8 10.9 98 145-269 180-278 (335)
199 COG0771 MurD UDP-N-acetylmuram 34.1 3E+02 0.0065 28.6 9.7 150 96-253 7-205 (448)
200 PRK11543 gutQ D-arabinose 5-ph 34.0 1.4E+02 0.003 28.4 7.0 80 96-181 42-121 (321)
201 cd05013 SIS_RpiR RpiR-like pro 33.3 1.1E+02 0.0025 24.3 5.4 82 97-185 14-95 (139)
202 COG1402 Uncharacterized protei 32.5 1.5E+02 0.0033 28.3 6.8 70 158-230 39-118 (250)
203 PF12641 Flavodoxin_3: Flavodo 32.3 1.7E+02 0.0037 25.8 6.7 67 103-185 6-75 (160)
204 TIGR01698 PUNP purine nucleoti 32.0 1.4E+02 0.0031 28.2 6.5 79 99-182 2-88 (237)
205 PRK13671 hypothetical protein; 32.0 2.2E+02 0.0048 27.9 8.0 63 150-220 5-67 (298)
206 PF13399 LytR_C: LytR cell env 31.5 1.4E+02 0.003 23.0 5.4 44 97-141 43-86 (90)
207 cd05017 SIS_PGI_PMI_1 The memb 31.4 2.1E+02 0.0045 23.2 6.7 38 142-184 40-77 (119)
208 PRK01033 imidazole glycerol ph 30.9 4.5E+02 0.0098 24.6 9.7 155 107-288 62-225 (258)
209 PRK03806 murD UDP-N-acetylmura 30.5 3.3E+02 0.0072 27.1 9.2 150 108-278 273-425 (438)
210 cd01715 ETF_alpha The electron 30.3 1.8E+02 0.0039 25.2 6.5 64 208-281 44-107 (168)
211 PRK11382 frlB fructoselysine-6 30.2 1.2E+02 0.0026 29.7 5.9 79 97-180 45-123 (340)
212 PRK13670 hypothetical protein; 29.7 4.5E+02 0.0097 26.6 10.0 92 167-280 20-117 (388)
213 PF08410 DUF1737: Domain of un 29.7 1.7E+02 0.0037 21.7 5.2 36 97-132 4-41 (54)
214 PRK11921 metallo-beta-lactamas 29.3 2.8E+02 0.006 27.6 8.4 111 95-218 246-363 (394)
215 PRK05723 flavodoxin; Provision 28.3 2.9E+02 0.0063 23.9 7.4 114 98-222 2-123 (151)
216 TIGR01752 flav_long flavodoxin 28.1 4E+02 0.0086 23.1 9.2 98 107-222 13-118 (167)
217 PRK08659 2-oxoglutarate ferred 28.0 2.7E+02 0.0058 27.9 8.1 63 145-226 273-335 (376)
218 PRK08931 5'-methylthioadenosin 27.6 87 0.0019 30.5 4.4 78 96-182 3-85 (289)
219 PRK08841 aspartate kinase; Val 27.1 5.6E+02 0.012 25.8 10.2 122 145-288 33-171 (392)
220 PRK11557 putative DNA-binding 26.9 1.2E+02 0.0026 28.3 5.1 80 96-181 128-207 (278)
221 PF02006 DUF137: Protein of un 26.5 80 0.0017 28.8 3.6 83 167-252 48-149 (178)
222 PF09419 PGP_phosphatase: Mito 26.5 3E+02 0.0065 24.7 7.3 69 210-286 35-110 (168)
223 PRK09213 pur operon repressor; 26.4 2.6E+02 0.0057 27.0 7.4 71 104-178 138-225 (271)
224 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.1 2.1E+02 0.0046 23.5 6.0 84 96-184 13-96 (153)
225 PLN02683 pyruvate dehydrogenas 25.9 6.7E+02 0.014 25.0 13.0 112 96-227 163-291 (356)
226 PRK11337 DNA-binding transcrip 25.9 1.5E+02 0.0031 28.0 5.5 79 97-181 141-219 (292)
227 PRK07432 5'-methylthioadenosin 25.8 2E+02 0.0044 28.1 6.5 80 96-182 3-85 (290)
228 PF14336 DUF4392: Domain of un 25.7 1.9E+02 0.0041 28.1 6.3 50 176-226 38-87 (291)
229 PLN02723 3-mercaptopyruvate su 25.6 2.4E+02 0.0052 27.4 7.0 98 182-288 10-135 (320)
230 cd00560 PanC Pantoate-beta-ala 25.5 1E+02 0.0022 29.8 4.4 65 145-219 21-90 (277)
231 CHL00200 trpA tryptophan synth 25.2 2.9E+02 0.0064 26.4 7.4 65 205-288 109-173 (263)
232 TIGR01744 XPRTase xanthine pho 25.1 5.2E+02 0.011 23.4 10.0 72 103-178 57-146 (191)
233 TIGR01754 flav_RNR ribonucleot 24.3 3.2E+02 0.007 22.7 6.8 44 107-153 14-58 (140)
234 TIGR00640 acid_CoA_mut_C methy 23.8 3.3E+02 0.0071 23.1 6.8 59 145-222 53-112 (132)
235 cd04732 HisA HisA. Phosphorib 23.7 5.4E+02 0.012 23.1 13.6 159 105-288 59-218 (234)
236 COG2236 Predicted phosphoribos 23.7 4.3E+02 0.0092 24.3 7.8 61 96-156 29-98 (192)
237 PRK05500 bifunctional orotidin 23.5 2.8E+02 0.006 29.1 7.3 78 105-187 353-430 (477)
238 TIGR01743 purR_Bsub pur operon 23.3 6.8E+02 0.015 24.2 9.9 71 104-178 136-223 (268)
239 PRK10886 DnaA initiator-associ 23.2 2.2E+02 0.0047 26.0 5.9 83 96-182 41-142 (196)
240 cd01449 TST_Repeat_2 Thiosulfa 23.2 3.1E+02 0.0067 21.6 6.3 21 203-226 2-22 (118)
241 cd04724 Tryptophan_synthase_al 23.1 6.1E+02 0.013 23.5 11.5 88 164-278 63-150 (242)
242 COG0503 Apt Adenine/guanine ph 23.1 4.2E+02 0.009 23.7 7.6 70 105-178 62-145 (179)
243 PRK13670 hypothetical protein; 22.7 1.6E+02 0.0034 29.9 5.3 48 162-221 49-100 (388)
244 cd06409 PB1_MUG70 The MUG70 pr 22.6 4.1E+02 0.0089 21.4 7.6 65 104-185 20-84 (86)
245 PF13460 NAD_binding_10: NADH( 22.5 3.4E+02 0.0073 22.9 6.7 51 142-194 57-107 (183)
246 PF02233 PNTB: NAD(P) transhyd 22.4 77 0.0017 33.0 3.0 133 98-251 238-381 (463)
247 COG0461 PyrE Orotate phosphori 22.3 3.9E+02 0.0086 24.8 7.4 76 98-178 61-141 (201)
248 PRK11249 katE hydroperoxidase 22.0 2.8E+02 0.006 30.8 7.3 81 105-190 546-637 (752)
249 COG1236 YSH1 Predicted exonucl 21.8 3.3E+02 0.0071 27.8 7.4 55 147-216 182-241 (427)
250 PRK07534 methionine synthase I 21.7 6.6E+02 0.014 24.8 9.4 59 145-215 144-202 (336)
251 TIGR00259 thylakoid_BtpA membr 21.7 3.4E+02 0.0073 26.1 7.0 78 204-288 30-108 (257)
252 cd03409 Chelatase_Class_II Cla 21.6 94 0.002 24.0 2.8 21 168-189 50-70 (101)
253 TIGR00644 recJ single-stranded 21.2 2.6E+02 0.0057 29.3 6.7 70 146-228 55-124 (539)
254 PRK14463 ribosomal RNA large s 21.1 3.9E+02 0.0084 26.6 7.6 56 158-217 261-316 (349)
255 cd01448 TST_Repeat_1 Thiosulfa 21.0 4.3E+02 0.0093 21.0 7.7 38 244-281 65-104 (122)
256 PF00258 Flavodoxin_1: Flavodo 21.0 2E+02 0.0043 23.6 4.8 104 107-220 10-123 (143)
257 TIGR00262 trpA tryptophan synt 20.9 3.5E+02 0.0076 25.5 7.0 91 164-280 73-163 (256)
258 PTZ00182 3-methyl-2-oxobutanat 20.7 8.4E+02 0.018 24.2 12.4 65 144-227 232-296 (355)
259 cd04795 SIS SIS domain. SIS (S 20.7 2E+02 0.0044 21.2 4.4 78 101-183 3-81 (87)
260 PRK08202 purine nucleoside pho 20.6 7E+02 0.015 23.7 9.0 79 96-182 21-110 (272)
261 PLN02591 tryptophan synthase 20.6 3.5E+02 0.0077 25.7 6.9 66 204-288 95-160 (250)
262 PRK11929 putative bifunctional 20.6 7.7E+02 0.017 27.5 10.6 105 109-225 797-904 (958)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-77 Score=573.48 Aligned_cols=227 Identities=63% Similarity=1.002 Sum_probs=220.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.++|+||+|++|++||++||+.||++++++++++|||||++|+|.|+|||+||||+|++++|+||+|||||+|+||||++
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~a 81 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRA 81 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCC
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTV 255 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~ 255 (324)
||++||+||||||||||||++++|||||+|++|+||+.+|+|||+|+|+|++|+||||++|++||++.+.+++|++++.
T Consensus 82 sA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~- 160 (314)
T COG0462 82 SAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY- 160 (314)
T ss_pred CCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhc-
Confidence 9999999999999999999889999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeC-CCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 256 SSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 256 ~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~-~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
..+|++|||||.||++||+.+|+.|+ .++++++|+|+ ..+.++++.++|||+||+|||||||||||||
T Consensus 161 ~~~d~vVVSPD~Ggv~RAr~~A~~L~-~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGT 229 (314)
T COG0462 161 DLDDPVVVSPDKGGVKRARALADRLG-APLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGT 229 (314)
T ss_pred CCCCcEEECCCccHHHHHHHHHHHhC-CCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHH
Confidence 56689999999999999999999997 68999999996 8889999999999999999999999999996
No 2
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=3.2e-68 Score=515.11 Aligned_cols=243 Identities=74% Similarity=1.153 Sum_probs=229.2
Q ss_pred hhhhhhhhhhhhhccCCCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCch
Q 020556 80 KFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPAN 159 (324)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~n 159 (324)
.|.+.+|.++.+.-.+.++|+||+|+++++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~n 82 (330)
T PRK02812 3 SFATAARAEQLPLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVN 82 (330)
T ss_pred cccccccCCCCccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCcc
Confidence 35667788877777778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccce
Q 020556 160 ENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDH 239 (324)
Q Consensus 160 d~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~n 239 (324)
|+|||||++++|||++||++||+|+|||||+||||++++||||++|++|+||+.+|+|+|+|+|+|++++++||++|++|
T Consensus 83 d~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~n 162 (330)
T PRK02812 83 DHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDH 162 (330)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEeccc
Q 020556 240 VYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMI 319 (324)
Q Consensus 240 L~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDII 319 (324)
|++.+.+++||+++ +.++++||+||.|+.+||+.+|+.|++.++++++|+|...+..+.+.+.|+++||+||||||||
T Consensus 163 l~~~~~l~~~i~~~--~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii 240 (330)
T PRK02812 163 VYGSPVLLDYLASK--NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMI 240 (330)
T ss_pred eeChHHHHHHHHhc--CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEcccc
Confidence 99999999999765 3579999999999999999999999657999999999877666667788999999999999999
Q ss_pred ccCCC
Q 020556 320 DTAGW 324 (324)
Q Consensus 320 dTGGs 324 (324)
+||+|
T Consensus 241 ~TG~T 245 (330)
T PRK02812 241 DTGGT 245 (330)
T ss_pred CcHHH
Confidence 99985
No 3
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.7e-68 Score=511.34 Aligned_cols=227 Identities=56% Similarity=0.919 Sum_probs=215.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
++|+||+|+++++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||+|||||++++|||++|
T Consensus 5 ~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~ 84 (319)
T PRK04923 5 RNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRAS 84 (319)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 56999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCeEEEEEcCCCccccccccc-CCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCC
Q 020556 177 AKNITAVIPYFGYARADRKTQ-GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTV 255 (324)
Q Consensus 177 AkrItlViPYlpYaRQDR~~~-~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~ 255 (324)
|++||+|+||||||||||++. +|||||+|++|+||+++|+|+|+|+|+|++++++||++|++||++.+++++||.+..
T Consensus 85 a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~- 163 (319)
T PRK04923 85 AASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAY- 163 (319)
T ss_pred CcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhc-
Confidence 999999999999999999996 478999999999999999999999999999999999999999999999999996542
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 256 SSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 256 ~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+.++++||+||.|+++||+.+|+.|+.+++++++|+|+..+..+.+.+.|||+||+|||||||||||+|
T Consensus 164 ~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 164 GTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGT 232 (319)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHH
Confidence 357899999999999999999999964799999999987766667788999999999999999999986
No 4
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=7.1e-68 Score=513.05 Aligned_cols=228 Identities=52% Similarity=0.815 Sum_probs=217.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHh
Q 020556 95 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (324)
Q Consensus 95 ~~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ 174 (324)
.+++++||+|+++++||++||+.||++++++++++|||||+++++.++|||+|||||||++.|+||+|||||++++|||+
T Consensus 6 ~~~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~ 85 (332)
T PRK00553 6 DKSNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKR 85 (332)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcC
Q 020556 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (324)
Q Consensus 175 agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~ 254 (324)
+||++||+|+|||||+||||++++|||+++|++|+||+.+|+|+|+|+|+|++++++||++|++||++.+++++|+.+.
T Consensus 86 ~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~- 164 (332)
T PRK00553 86 GSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLEL- 164 (332)
T ss_pred cCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 255 VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 255 ~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
.+.++++||+||.|+.+||+.+|+.|| .++++++|+|...+..+.+.+.||++||+|||||||||||||
T Consensus 165 ~~~~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~T 233 (332)
T PRK00553 165 LGKKDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGT 233 (332)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHH
Confidence 245789999999999999999999997 799999999987776677788999999999999999999986
No 5
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=8.9e-68 Score=525.68 Aligned_cols=227 Identities=53% Similarity=0.852 Sum_probs=217.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.++|+||+|+++++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||+|||||++++|||++
T Consensus 117 ~~~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~a 196 (439)
T PTZ00145 117 MENAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRA 196 (439)
T ss_pred cCCeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccC--CccceeeehHHHHHHHHhc
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~--ipv~nL~~~~~l~~yl~~~ 253 (324)
||++||+||||||||||||++++|||||+|++|+||+++|+|+|||||+|++|+++||+ +|++||++.+.+++|+.++
T Consensus 197 gAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~~ 276 (439)
T PTZ00145 197 SAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKK 276 (439)
T ss_pred ccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999997 9999999999999999764
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHHcCC-----CCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 254 TVSSNDLVVVSPDVGGVARARAFAKKLSD-----APLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 254 ~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~-----~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+..++|||+||.|+++||+.||+.|+. +++++++|+|+..+.++.+.++|||+||+|||||||||||+|
T Consensus 277 --~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~T 350 (439)
T PTZ00145 277 --DLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGT 350 (439)
T ss_pred --CCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHH
Confidence 357899999999999999999999962 689999999998888788889999999999999999999985
No 6
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.7e-67 Score=508.21 Aligned_cols=227 Identities=53% Similarity=0.909 Sum_probs=215.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
++|+||+|+++++||++||++||++++++++++|||||++|++.++|||+|||||||++.|+||+|||||++++|||++|
T Consensus 4 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~ 83 (320)
T PRK02269 4 SDLKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRAS 83 (320)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCC
Q 020556 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS 256 (324)
Q Consensus 177 AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~ 256 (324)
|++||+|+||||||||||++++|||||+|++|+||+++|+|+|+|+|+|++++++||++|++|+++.+++++|+.+..++
T Consensus 84 a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~ 163 (320)
T PRK02269 84 AESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLV 163 (320)
T ss_pred CCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred CCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCC--CceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 257 ~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~--~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
.++++||+||.|+.+||+.+|+.|+ .++++++|+|... +..+.+.+.|||+||+|||||||||||+|
T Consensus 164 ~~~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T 232 (320)
T PRK02269 164 GDDVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGT 232 (320)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHH
Confidence 6789999999999999999999997 7999999998743 44455678999999999999999999985
No 7
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.2e-66 Score=502.99 Aligned_cols=228 Identities=48% Similarity=0.805 Sum_probs=215.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHh
Q 020556 95 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (324)
Q Consensus 95 ~~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ 174 (324)
++++|+||+|+++++||++||+.||++++++++++|||||+++++.++|||+|||||||++.|+||+|||||++++|||+
T Consensus 6 ~~~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~ 85 (323)
T PRK02458 6 ADKQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKR 85 (323)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcC
Q 020556 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (324)
Q Consensus 175 agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~ 254 (324)
+||++|++|+|||||+||||++++||||++|++|+||+++|+|+|+|+|+|++++++||++|++||++.+++++|+.+..
T Consensus 86 ~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~ 165 (323)
T PRK02458 86 ASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKG 165 (323)
T ss_pred cCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997764
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 255 VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 255 ~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
++.++++||+||.|+++||+.+|+.|+ .++++++|+|..... +...+.|||+||+|||||||||||+|
T Consensus 166 ~~~~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~-~~~~i~gdV~gk~viIVDDIidTG~T 233 (323)
T PRK02458 166 LSGSDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSER-EEGYIIGDVAGKKAILIDDILNTGKT 233 (323)
T ss_pred CCCCceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcc-eeeccccccCCCEEEEEcceeCcHHH
Confidence 445899999999999999999999997 799999998865432 33457899999999999999999985
No 8
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-66 Score=487.53 Aligned_cols=227 Identities=53% Similarity=0.903 Sum_probs=219.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
++++||+|+++|+||++||++||++++++.+++|+|||++|++.|+|||+|||++||.+.|.||+|||||+|++|||+++
T Consensus 2 ~~i~lf~g~shp~La~~I~~~lgi~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~as 81 (316)
T KOG1448|consen 2 KNIKLFSGDSHPELAERIAARLGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRAS 81 (316)
T ss_pred CceEEEcCCCCHHHHHHHHHHhCCCcceeeeEEccCCcEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCC
Q 020556 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS 256 (324)
Q Consensus 177 AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~ 256 (324)
|++||+|||||||+||||+.+.+.+++||++|+||+.+|+|+|||+|+|..|.+|||++|++|+++.+.+.+|++.+..+
T Consensus 82 a~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~ 161 (316)
T KOG1448|consen 82 ASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPD 161 (316)
T ss_pred hheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccchhhCceeeccchhhccchHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988788
Q ss_pred CCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCcee-EEEeeeecCCCeEEEEecccccCCC
Q 020556 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAE-VMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 257 ~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e-~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+++.+||+||+|+.||+.++|++|. ..++.+.|.|...+++. .|.++|||+||.|||||||+||+|+
T Consensus 162 ~~~~vivSPdaGgaKR~~s~ad~l~-~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GT 229 (316)
T KOG1448|consen 162 SENAVIVSPDAGGAKRVTSLADRLN-LDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGT 229 (316)
T ss_pred ccceEEECCCcchhhhhHHHHHhhc-chhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccch
Confidence 9999999999999999999999996 68899999988777766 8899999999999999999999996
No 9
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=5.6e-65 Score=487.03 Aligned_cols=220 Identities=30% Similarity=0.472 Sum_probs=206.9
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAk 178 (324)
++||+|++|+.||++||+.||++++++++++|||||++|++.++|||+|||||||++.| ||+|||||+|++|||++||+
T Consensus 3 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a~ 81 (301)
T PRK07199 3 PLLLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGAR 81 (301)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCCC
Confidence 67999999999999999999999999999999999999999999999999999999888 99999999999999999999
Q ss_pred eEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCc---hhcccccCCccceeeehHHHHHHHHhcCC
Q 020556 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS---GQSMGYFDIPVDHVYCQPVILDYLASKTV 255 (324)
Q Consensus 179 rItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs---~~~~~fF~ipv~nL~~~~~l~~yl~~~~~ 255 (324)
+||+|+||||||||||++++|||||+|++|+||++ |+|+|+|+|+|+ .++++||++|++|+++.+.+++||++.
T Consensus 82 ~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~-~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~-- 158 (301)
T PRK07199 82 RVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG-SFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH-- 158 (301)
T ss_pred eEEEEeecccccccccccCCCCCccHHHHHHHHHh-hcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc--
Confidence 99999999999999999999999999999999985 899999999998 688999999999999999999999864
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEe-eeecCCCeEEEEecccccCCC
Q 020556 256 SSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNL-IGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 256 ~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~l-vGDVkGk~vIIVDDIIdTGGs 324 (324)
.++++||+||.|+.+||+.+|+.++ .++++++|+|.+.+..+.... .++|+||+|||||||||||+|
T Consensus 159 -~~~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~T 226 (301)
T PRK07199 159 -VPRPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRT 226 (301)
T ss_pred -CCCcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHH
Confidence 4689999999999999999999997 799999999987765555433 347999999999999999985
No 10
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.5e-64 Score=484.67 Aligned_cols=214 Identities=49% Similarity=0.827 Sum_probs=202.2
Q ss_pred HHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCc
Q 020556 110 LSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGY 189 (324)
Q Consensus 110 LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpY 189 (324)
||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||+|||||++++|||++||++||+|||||||
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~Y 80 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPY 80 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCc
Q 020556 190 ARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGG 269 (324)
Q Consensus 190 aRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga 269 (324)
|||||++++|||+++|++|+||+.+|+|+|+|+|+|++++++||++|++||++.+.+++||.+.. +.++++||+||.|+
T Consensus 81 aRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~-~~~~~vvVspd~Ga 159 (304)
T PRK03092 81 ARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKY-DLDNVTVVSPDAGR 159 (304)
T ss_pred cccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhc-CCCCcEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999997642 35789999999999
Q ss_pred hHHHHHHHHHcCCCCEEEEEeEeCCC--CceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 270 VARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 270 ~kRA~~~A~~L~~~~~~~~~K~R~~~--~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
.+||+.+|+.|+..++++++|.|+.. +..+...+.|||+||+|||||||||||+|
T Consensus 160 ~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~T 216 (304)
T PRK03092 160 VRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGT 216 (304)
T ss_pred HHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHH
Confidence 99999999999746999999999743 34455678899999999999999999986
No 11
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=3.3e-64 Score=483.14 Aligned_cols=223 Identities=63% Similarity=1.011 Sum_probs=213.6
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAk 178 (324)
|+||+|++++.||++||+.||++++++++++|||||+++++.++|+|+|||||||++.|+||++||||++++|||++||+
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~ 80 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAG 80 (309)
T ss_pred CEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCc
Confidence 67999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred eEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCC
Q 020556 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSN 258 (324)
Q Consensus 179 rItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~ 258 (324)
+||+|+||||||||||++++|||+++|++|+||+++|+|+|+|+|+|++++++||++|++||++.+.+++|+++. +.+
T Consensus 81 ~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~--~~~ 158 (309)
T PRK01259 81 RITAVIPYFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK--NLE 158 (309)
T ss_pred eEEEEeeccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999765 357
Q ss_pred CeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 259 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 259 ~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+++||+||.||.+||+.+|+.|| .++.+++|+|...+..+.+.+.|+++||+|||||||++||+|
T Consensus 159 ~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T 223 (309)
T PRK01259 159 NLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGT 223 (309)
T ss_pred CcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHH
Confidence 89999999999999999999997 799999999987766666678899999999999999999985
No 12
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=9.3e-64 Score=491.56 Aligned_cols=226 Identities=28% Similarity=0.470 Sum_probs=208.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHh--------------------C--CceeceEEeecCCCceEEEeccCcCCCcEEEEec
Q 020556 96 NNRIKLFSGTANPALSQEIACYM--------------------G--VELGKINIKRFADGEIYVQLQESVRGCDVYLVQP 153 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~L--------------------g--~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS 153 (324)
..+|+||+|+++++||++||++| | ++++++++++|||||++|++.++|||+|||||||
T Consensus 6 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 6 VGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQD 85 (382)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEec
Confidence 45699999999999999999999 6 4599999999999999999999999999999999
Q ss_pred CCC--------------CchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeE
Q 020556 154 TCP--------------PANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRV 219 (324)
Q Consensus 154 ~~~--------------p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~V 219 (324)
++. |+||+|||||+|++||| +||++||+|+||||||||||+ .+|||||+|++|+||+.+|+|+|
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~~~G~d~v 163 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELEELGVDNI 163 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHHHcCCCeE
Confidence 974 78999999999999999 999999999999999999999 79999999999999999999999
Q ss_pred EEEcCCchhcccccC-CccceeeehHHHHHHHHhcC----CCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCC
Q 020556 220 LACDLHSGQSMGYFD-IPVDHVYCQPVILDYLASKT----VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG 294 (324)
Q Consensus 220 itvDlHs~~~~~fF~-ipv~nL~~~~~l~~yl~~~~----~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~ 294 (324)
+|+|+|++|+++||+ +|++|+++.+.+++|+.+.. ++.++++||+||.||++||+.+|+.|| .++++++|+|+.
T Consensus 164 itvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~ 242 (382)
T PRK06827 164 ITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDY 242 (382)
T ss_pred EEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCC
Confidence 999999999999998 58999999999999997542 123789999999999999999999997 799999999975
Q ss_pred CCce------eEEEeee-ecCCCeEEEEecccccCCC
Q 020556 295 HNVA------EVMNLIG-DVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 295 ~~~~------e~~~lvG-DVkGk~vIIVDDIIdTGGs 324 (324)
.+.. ..+.++| ||+||+|||||||||||||
T Consensus 243 ~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~T 279 (382)
T PRK06827 243 SRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGS 279 (382)
T ss_pred cccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHH
Confidence 4322 3456789 9999999999999999986
No 13
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=2.4e-63 Score=475.90 Aligned_cols=217 Identities=95% Similarity=1.389 Sum_probs=205.6
Q ss_pred HHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 020556 108 PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 187 (324)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYl 187 (324)
++||++||+.||++++++++++|||||+++++.++|||+|||||||+++|+||+|||||++++|||++||++||+|+|||
T Consensus 1 ~~lA~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl 80 (302)
T PLN02369 1 PALSQEIACYLGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYF 80 (302)
T ss_pred ChHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCC
Q 020556 188 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV 267 (324)
Q Consensus 188 pYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~ 267 (324)
|||||||++++|||+++|++|+||+++|+|+|+|+|+|++++++||++|++|+++.+.+++||.+..+..++++||+||.
T Consensus 81 ~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~ 160 (302)
T PLN02369 81 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDV 160 (302)
T ss_pred cccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999976533347899999999
Q ss_pred CchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 268 GGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 268 Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
||.+||+.+|+.|.++++++++|+|++.+..+.+.+.||++||+||||||||+||+|
T Consensus 161 gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~T 217 (302)
T PLN02369 161 GGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGT 217 (302)
T ss_pred ChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHH
Confidence 999999999999955899999999987766666678899999999999999999985
No 14
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=4.1e-63 Score=478.33 Aligned_cols=225 Identities=24% Similarity=0.383 Sum_probs=203.8
Q ss_pred ccCCCCEEEEECCCCHHHHHHHHHHh-CCceeceEEeecCCCceEEEe--ccCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 93 RTTNNRIKLFSGTANPALSQEIACYM-GVELGKINIKRFADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 93 ~~~~~~~~Ifsgss~~~LA~~Ia~~L-g~~l~~i~~~rFpDGE~~V~i--~esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
++.+++|+||+|++|+.||++||+.| |++++++++++|||||.++++ .++|||+|||||||++.| |+|||||+++
T Consensus 11 ~~~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p--d~lmELLl~~ 88 (326)
T PLN02297 11 KKNKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVI 88 (326)
T ss_pred cccCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC--hHHHHHHHHH
Confidence 44477899999999999999999996 899999999999999655555 699999999999999876 7899999999
Q ss_pred HHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHH-----hCCCeEEEEcCCchhcccccCCcccee--ee
Q 020556 170 DACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITE-----AGADRVLACDLHSGQSMGYFDIPVDHV--YC 242 (324)
Q Consensus 170 dAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~-----~G~d~VitvDlHs~~~~~fF~ipv~nL--~~ 242 (324)
+|||++||++||+|+||||||||||++++|||||+|++|+||++ +|+|+|+|+|+|++|+++||++|++++ ++
T Consensus 89 dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a 168 (326)
T PLN02297 89 YALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESG 168 (326)
T ss_pred HHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhcc
Confidence 99999999999999999999999999999999999999999999 899999999999999999999999866 89
Q ss_pred hHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccC
Q 020556 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTA 322 (324)
Q Consensus 243 ~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTG 322 (324)
.+.+++||.+.. +.++++||+||.|+.+||+.++ + +.++++++|+|.+.. ...+.+.||++||+|||||||||||
T Consensus 169 ~~~l~~~i~~~~-~~~~~vvVsPD~Ga~~ra~~~a--~-~~~~~~~~K~R~g~~-~~~~~~~~dv~gr~vlIVDDIidTG 243 (326)
T PLN02297 169 IPLLKKRLQQLP-DSDNIVIAFPDDGAWKRFHKQF--E-HFPMVVCTKVREGDK-RIVRIKEGNPAGRHVVIVDDLVQSG 243 (326)
T ss_pred HHHHHHHHHhcc-ccCCcEEEecCccHHHHHHHHc--C-CCCEEEEEeEECCCc-eEEEecccccCCCeEEEEecccCcH
Confidence 999999997531 2578999999999999998877 4 479999999997643 3344678999999999999999999
Q ss_pred CC
Q 020556 323 GW 324 (324)
Q Consensus 323 Gs 324 (324)
+|
T Consensus 244 ~T 245 (326)
T PLN02297 244 GT 245 (326)
T ss_pred HH
Confidence 85
No 15
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.8e-62 Score=466.05 Aligned_cols=219 Identities=36% Similarity=0.617 Sum_probs=205.0
Q ss_pred EEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCe
Q 020556 100 KLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKN 179 (324)
Q Consensus 100 ~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkr 179 (324)
+||+|++|+.||++||+.||++++++++++|||||++|++.++|||+||||+|++. |+||+|||||++++|||++||++
T Consensus 1 ~i~~~~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~~-~~~d~l~ell~~~~alr~~ga~~ 79 (285)
T PRK00934 1 MIIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTY-PQDENLVELLLLIDALRDEGAKS 79 (285)
T ss_pred CeEeCCCCHHHHHHHHHHHCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCCC-CCcHHHHHHHHHHHHHHHcCCCe
Confidence 48999999999999999999999999999999999999999999999999999864 67999999999999999999999
Q ss_pred EEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCC
Q 020556 180 ITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSND 259 (324)
Q Consensus 180 ItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~ 259 (324)
||+|+||||||||||++++|||+++|++|+||+++| |+|+|+|+|++++++||++|++|+++.+.+++||.+ +.++
T Consensus 80 i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~---~~~~ 155 (285)
T PRK00934 80 ITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGD---KLDD 155 (285)
T ss_pred EEEEecCCcccccccccCCCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHh---cCCC
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999954 2467
Q ss_pred eEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 260 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 260 ~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
++||+||.|+.+||..+|+.|+ .++.+++|+|...+..+.....++++||+||||||||+||+|
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~T 219 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEILG-CEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGT 219 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHH
Confidence 8999999999999999999997 799999999976655444444679999999999999999985
No 16
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.1e-62 Score=469.92 Aligned_cols=223 Identities=60% Similarity=0.969 Sum_probs=212.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEE-ecCCCCchhhHHHHHHHHHHHHhcCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV-QPTCPPANENLMELLIMIDACRRASA 177 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IV-qS~~~p~nd~LmELLl~idAlr~agA 177 (324)
|+||+|++++.||++||+.||++++++++++|||||+++++.++|||+||||+ ||+++|+||++|||+++++|||++||
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga 80 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASA 80 (308)
T ss_pred CEEEECCCCHHHHHHHHHHhCCeeeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999999999999999999999 99988899999999999999999999
Q ss_pred CeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCC
Q 020556 178 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSS 257 (324)
Q Consensus 178 krItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~ 257 (324)
++||+|+||||||||||++++|||+++|++|+||+++|+|+|+|+|+|++++++||++|++|+++.+.+++|+.++. .
T Consensus 81 ~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~--~ 158 (308)
T TIGR01251 81 KSITAVIPYYGYARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKI--L 158 (308)
T ss_pred CeEEEEEEecccchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998753 4
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeC-CCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~-~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
++++||+||.|+.+||+.+|+.|| .++.+++|+|. .++..+...+.|+++||+|+|||||++||+|
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~T 225 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGT 225 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHH
Confidence 689999999999999999999997 79999999998 4555555667889999999999999999975
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=371.27 Aligned_cols=228 Identities=35% Similarity=0.642 Sum_probs=209.3
Q ss_pred hccCCCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHH
Q 020556 92 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (324)
Q Consensus 92 ~~~~~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idA 171 (324)
++.+.++|.+|+|+++++||+.|++.||++++++.+.+-+|+|+.|+|.++||||||||+|+.+..+|.++||||+|+.|
T Consensus 2 ~n~a~sg~vl~s~ns~~elak~vaerlgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~ya 81 (354)
T KOG1503|consen 2 MNDASSGMVLFSGNSHPELAKMVAERLGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYA 81 (354)
T ss_pred CCcccCCeEEEcCCCCHHHHHHHHHHhcccccceEEEecCCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHH
Q 020556 172 CRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLA 251 (324)
Q Consensus 172 lr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~ 251 (324)
||.++|++|+.|||||||++| .+++++.+|..|++|.|+..+|..++||+|+|..++||||++|+|||.+.|.+.+||.
T Consensus 82 ckts~aksiigvipy~pyskq-ckmrkrgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiq 160 (354)
T KOG1503|consen 82 CKTSCAKSIIGVIPYLPYSKQ-CKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQ 160 (354)
T ss_pred HhhhhhhceEEEeecCccchh-hhhhhcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHH
Confidence 999999999999999999999 6778899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeC-----------CC--C-------cee----------EE
Q 020556 252 SKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH-----------GH--N-------VAE----------VM 301 (324)
Q Consensus 252 ~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~-----------~~--~-------~~e----------~~ 301 (324)
+..++.+|.|||+-..|.++||..||++|. +.+++++.+-. .. + ..+ -+
T Consensus 161 e~ipdyrnavivaksp~~akka~syaerlr-lglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppl 239 (354)
T KOG1503|consen 161 EEIPDYRNAVIVAKSPGVAKKAQSYAERLR-LGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPL 239 (354)
T ss_pred HhCccccceEEEecCcchhhHHHhHHHHHh-hceeEeeccccccccccccCCcCCCCccccccCccccCchhhcccCCCe
Confidence 988899999999999999999999999985 56777765421 00 0 001 14
Q ss_pred EeeeecCCCeEEEEeccccc
Q 020556 302 NLIGDVKGKVAVMVDDMIDT 321 (324)
Q Consensus 302 ~lvGDVkGk~vIIVDDIIdT 321 (324)
.++|||.||.+||||||||.
T Consensus 240 tvvgdvggriaimvddiidd 259 (354)
T KOG1503|consen 240 TVVGDVGGRIAIMVDDIIDD 259 (354)
T ss_pred EEEeccCceEEEEehhhHHh
Confidence 68999999999999999985
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=1.7e-42 Score=290.28 Aligned_cols=116 Identities=55% Similarity=0.921 Sum_probs=102.7
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAk 178 (324)
|+||+|+++++||++||++||++++++++++|||||++|++.+++||+||||||++++|+||++||||++++|||++||+
T Consensus 1 m~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred CEEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhC
Q 020556 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 215 (324)
Q Consensus 179 rItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G 215 (324)
+|++|+|||||+||||+ .+|||+|+|++|+||+++|
T Consensus 81 ~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~~G 116 (116)
T PF13793_consen 81 RITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSAAG 116 (116)
T ss_dssp EEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHHHT
T ss_pred EEEEeccchhhhhhccC-CCCCcchHHHHHHHHHhcC
Confidence 99999999999999999 9999999999999999987
No 19
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.56 E-value=8.1e-15 Score=130.13 Aligned_cols=116 Identities=30% Similarity=0.410 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCC-CCCCeEEEeCCCCchHHHHHHHHHcCCC
Q 020556 205 KLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTV-SSNDLVVVSPDVGGVARARAFAKKLSDA 283 (324)
Q Consensus 205 k~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~-~~~~~vVVsPD~Ga~kRA~~~A~~L~~~ 283 (324)
..++++|...|++++-++|+||.+.++|| +.+..+...|.+.+++.+... ..+..+|++|+.|+..+|..+|..|+ .
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y-~d~~~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~-~ 80 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYY-IDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAG-K 80 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEE-EeCchhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHC-C
Confidence 46899999999999999999999999988 233346666666666654321 12345899999999999999999996 7
Q ss_pred CEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecccccCCC
Q 020556 284 PLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 284 ~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
|++++.|++...+.. ..+.|+++||+|+||||+++||+|
T Consensus 81 p~~~~rK~~k~~g~~--~~~~g~~~g~~VlIVDDvi~TG~T 119 (170)
T PRK13811 81 PYAIIRKEAKDHGKA--GLIIGDVKGKRVLLVEDVTTSGGS 119 (170)
T ss_pred CEEEEecCCCCCCCc--ceEEcccCCCEEEEEEecccccHH
Confidence 999999987544432 235789999999999999999986
No 20
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.53 E-value=5.5e-15 Score=133.07 Aligned_cols=67 Identities=40% Similarity=0.691 Sum_probs=49.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCC------------------------------CceeEEEeeee
Q 020556 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH------------------------------NVAEVMNLIGD 306 (324)
Q Consensus 257 ~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~------------------------------~~~e~~~lvGD 306 (324)
++|.||||||.|++|||..||+.|+ +.+++++|.|... +..+.+.++||
T Consensus 2 y~naVIVa~~~g~akRAts~Ad~L~-l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGD 80 (184)
T PF14572_consen 2 YRNAVIVAKDPGGAKRATSFADRLR-LGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGD 80 (184)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHCT--EEEEE------------------------------------------EEEES-
T ss_pred CCCCEEEeCCCCchHhHHHHHHHhC-CCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEE
Confidence 5789999999999999999999997 7999999987310 01123679999
Q ss_pred cCCCeEEEEecccccCCC
Q 020556 307 VKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 307 VkGk~vIIVDDIIdTGGs 324 (324)
|+||+|||||||||||||
T Consensus 81 V~gk~~IIvDDiIdtg~T 98 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGT 98 (184)
T ss_dssp -TTSEEEEEEEEESSTHH
T ss_pred ccCCeEeeecccccchHH
Confidence 999999999999999985
No 21
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.06 E-value=7.5e-10 Score=99.12 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCC----CeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHH
Q 020556 204 AKLVANLITEAGA----DRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKK 279 (324)
Q Consensus 204 ak~vA~lL~~~G~----d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~ 279 (324)
.+.+.++|...|+ +.++.--.||+...+.+.+.. +=.....+++++.+.. .++.+|++|+.|+..+|..+|..
T Consensus 3 ~~~l~~~l~~~~a~~~g~f~l~SG~~S~~yid~~~~~~-~p~~~~~i~~~l~~~i--~~~d~ivg~~~ggi~lA~~lA~~ 79 (176)
T PRK13812 3 TDDLIAALRDADAVQFGEFELSHGGTSEYYVDKYLFET-DPDCLRLIAEAFADRI--DEDTKLAGVALGAVPLVAVTSVE 79 (176)
T ss_pred HHHHHHHHHHCCCEEeCCEEECcCCcCCEEEeCeeccC-CHHHHHHHHHHHHHHh--ccCCEEEEeecchHHHHHHHHHH
Confidence 4556777777765 333333334443322222111 1122456777776653 13479999999999999999999
Q ss_pred cCCCCEEEEEeEeCCCCceeEEEeeeec-CCCeEEEEecccccCCC
Q 020556 280 LSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 280 L~~~~~~~~~K~R~~~~~~e~~~lvGDV-kGk~vIIVDDIIdTGGs 324 (324)
|+ .|+++..|+|...+..+ .+.|++ +|++|+||||+++||||
T Consensus 80 l~-~p~~~~rk~~k~yg~~~--~~~g~~~~g~~VlIVDDvitTG~T 122 (176)
T PRK13812 80 TG-VPYVIARKQAKEYGTGN--RIEGRLDEGEEVVVLEDIATTGQS 122 (176)
T ss_pred HC-CCEEEEeccCCcCCCCC--eEEecCCCcCEEEEEEEeeCCCHH
Confidence 97 79999999886543222 245777 89999999999999986
No 22
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=98.81 E-value=5.3e-09 Score=92.56 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCC--EEEEEeE--eCCC---CceeE-EEeeeecCCCeEEEE
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKR--RHGH---NVAEV-MNLIGDVKGKVAVMV 315 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~--~~~~~K~--R~~~---~~~e~-~~lvGDVkGk~vIIV 315 (324)
..+++.|.+. +..++++||+|+.||..+|..+++.|+ .+ +.++.-. |+.. +.... ..+.++++||+|+||
T Consensus 13 ~~lA~~I~~~-~~~~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vliv 90 (166)
T TIGR01203 13 AELAKQITED-YAGKPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIV 90 (166)
T ss_pred HHHHHHHHHH-cCCCCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEE
Confidence 3455555543 223679999999999999999999997 44 4344322 2211 11222 235568999999999
Q ss_pred ecccccCCC
Q 020556 316 DDMIDTAGW 324 (324)
Q Consensus 316 DDIIdTGGs 324 (324)
|||++||+|
T Consensus 91 DDii~TG~T 99 (166)
T TIGR01203 91 EDIVDTGLT 99 (166)
T ss_pred eeeeCcHHH
Confidence 999999975
No 23
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.79 E-value=3.7e-07 Score=88.22 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=104.6
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeec-CCCceEEE-eccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRF-ADGEIYVQ-LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rF-pDGE~~V~-i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.+.+=...++..+|..+|+.||.++..+...++ ++||..+. +.++++|++|+||..+...- . .++..++++++.
T Consensus 161 ~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG-~---Tl~~a~~~l~~~ 236 (308)
T TIGR01251 161 PVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTG-G---TIAKAAEILKSA 236 (308)
T ss_pred CEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCH-H---HHHHHHHHHHhc
Confidence 344444566779999999999999999999999 88886654 45789999999999887653 3 567888999999
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
||++|.++.++- ...++. +.++.+ .|+|+|++.|.|... .+|+ ++..++..+++++.|...
T Consensus 237 ga~~v~~~~th~--------v~~~~a-----~~~l~~-~~~~~iv~tdt~~~~--~~~~-~~~~v~va~~la~~i~~~ 297 (308)
T TIGR01251 237 GAKRVIAAATHG--------VFSGPA-----IERIAN-AGVEEVIVTNTIPHE--KHKP-KVSVISVAPLIAEAIRRI 297 (308)
T ss_pred CCCEEEEEEEee--------ecCcHH-----HHHHHh-CCCCEEEEeCCCCcc--ccCC-CcEEEEhHHHHHHHHHHH
Confidence 999999999731 112332 344444 589999999999764 3454 788899999999999764
No 24
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.73 E-value=6e-08 Score=89.07 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeee-cCCCeEEEEecccccCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGD-VKGKVAVMVDDMIDTAG 323 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGD-VkGk~vIIVDDIIdTGG 323 (324)
.+++.+.+.....+..+|++|+.||..+|..+|..++ .++.+..|.+..++..+...+.|. .+|++|+||||+++|||
T Consensus 54 ~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~-~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~ 132 (206)
T PRK13809 54 TIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYN-IPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGK 132 (206)
T ss_pred HHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhC-CCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCH
Confidence 3444444432234567899999999999999999996 799999998766654444444564 59999999999999998
Q ss_pred C
Q 020556 324 W 324 (324)
Q Consensus 324 s 324 (324)
|
T Consensus 133 T 133 (206)
T PRK13809 133 S 133 (206)
T ss_pred H
Confidence 6
No 25
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.73 E-value=2.7e-08 Score=88.90 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=70.5
Q ss_pred chhcccccCCccceeeehHHHHHHHHhc----CCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCc---e
Q 020556 226 SGQSMGYFDIPVDHVYCQPVILDYLASK----TVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV---A 298 (324)
Q Consensus 226 s~~~~~fF~ipv~nL~~~~~l~~yl~~~----~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~---~ 298 (324)
.-++++.|.++..++...+.+++.+.+. ..+ +..+||+|+.|++..|..+|+.|+ .++.++.|.+..... +
T Consensus 17 ~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~ 94 (178)
T PRK07322 17 LIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPII 94 (178)
T ss_pred eeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceE
Confidence 3466777888888888877776666432 222 556999999999999999999997 799888877642110 0
Q ss_pred -----------eEEEe----eeecCCCeEEEEecccccCCC
Q 020556 299 -----------EVMNL----IGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 299 -----------e~~~l----vGDVkGk~vIIVDDIIdTGGs 324 (324)
+...+ .++++||+|+||||+++||+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~T 135 (178)
T PRK07322 95 QEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGT 135 (178)
T ss_pred EEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHH
Confidence 01111 225789999999999999975
No 26
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.71 E-value=2.3e-08 Score=90.27 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=72.5
Q ss_pred eEEEEcCCchhcccccCCc-cceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCC
Q 020556 218 RVLACDLHSGQSMGYFDIP-VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN 296 (324)
Q Consensus 218 ~VitvDlHs~~~~~fF~ip-v~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~ 296 (324)
+++.--+|+....+|+++- +-.=.....+++.+.+.. +.+-.+|++|+.||..+|..+|..++ .|++++.|.|....
T Consensus 11 ~~~~~~~~~~~~~~~~D~~~~l~P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~-~p~~~~rk~~~~~~ 88 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQLPALRPKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSG-KPLAMARWYPYSLS 88 (187)
T ss_pred CccCCCCCCCcceeEEeChhhcCHHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhC-CCEEEeccCCCccc
Confidence 7788888887766777632 111011223333444332 34556999999999999999999886 89999999874322
Q ss_pred c------------ee-EEEeeeecCCCeEEEEecccccCCC
Q 020556 297 V------------AE-VMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 297 ~------------~e-~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
. .+ .+.+.|..+|++|+||||+++||+|
T Consensus 89 ~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T 129 (187)
T PRK12560 89 ELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGT 129 (187)
T ss_pred ceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHH
Confidence 1 11 1334456799999999999999986
No 27
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.68 E-value=3.5e-08 Score=88.46 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCC--EEEEEeEeCCCCce--eE---EEeeeecCCCeEEEEe
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRHGHNVA--EV---MNLIGDVKGKVAVMVD 316 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~--~~~~~K~R~~~~~~--e~---~~lvGDVkGk~vIIVD 316 (324)
..++++|.+. +..++++||+|+.||..+|+.+|+.|+ .+ +.++.+.|...... +. ....++++||+|+|||
T Consensus 27 ~~la~~i~~~-~~~~~~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVD 104 (181)
T PRK09162 27 DRMADEITAD-LADENPLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVD 104 (181)
T ss_pred HHHHHHHHHH-cCCCCeEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEc
Confidence 4566666654 234568999999999999999999997 45 34677776533211 11 1234689999999999
Q ss_pred cccccCCC
Q 020556 317 DMIDTAGW 324 (324)
Q Consensus 317 DIIdTGGs 324 (324)
||++||.|
T Consensus 105 DIidTG~T 112 (181)
T PRK09162 105 DILDEGHT 112 (181)
T ss_pred cccCcHHH
Confidence 99999975
No 28
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.67 E-value=6.9e-08 Score=85.67 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=51.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCc-----------eeEEEeeee--cCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-----------AEVMNLIGD--VKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~-----------~e~~~lvGD--VkGk~vIIVDDIIdTGGs 324 (324)
+.++||+|+.||...|..+|+.|+ .+++++.|.+..... .+.+.+.++ ++|++|+|||||++||+|
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~T 129 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGT 129 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHH
Confidence 457999999999999999999996 799998877642111 122334444 899999999999999975
No 29
>PLN02293 adenine phosphoribosyltransferase
Probab=98.66 E-value=8.7e-08 Score=86.69 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=52.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCce-----------eEEEe-eeec-CCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-----------EVMNL-IGDV-KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~-----------e~~~l-vGDV-kGk~vIIVDDIIdTGGs 324 (324)
+..+|++|+.||...|..+|..|+ .+++++.|.|...... +.+.+ .|++ +|++|+||||+++||||
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHH
Confidence 456899999999999999999997 7999999987532211 11222 3667 79999999999999986
No 30
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.62 E-value=9.4e-08 Score=85.85 Aligned_cols=80 Identities=16% Similarity=0.312 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCC-CCCeEEEeCCCCchHHHHHHHHHcCCCC--EEEEEeEeCCCC-----ceeEE-EeeeecCCCeEEE
Q 020556 244 PVILDYLASKTVS-SNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRHGHN-----VAEVM-NLIGDVKGKVAVM 314 (324)
Q Consensus 244 ~~l~~yl~~~~~~-~~~~vVVsPD~Ga~kRA~~~A~~L~~~~--~~~~~K~R~~~~-----~~e~~-~lvGDVkGk~vII 314 (324)
..+++.|.+...+ ..+++||+++.||..+|..+++.|+ .+ +.++++.|-+++ .+.+. .+..+++||+|||
T Consensus 19 ~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLl 97 (178)
T PRK15423 19 AELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLI 97 (178)
T ss_pred HHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEE
Confidence 3445555443211 2469999999999999999999996 44 668888775421 12222 2334799999999
Q ss_pred EecccccCCC
Q 020556 315 VDDMIDTAGW 324 (324)
Q Consensus 315 VDDIIdTGGs 324 (324)
||||+|||.|
T Consensus 98 VDDIiDTG~T 107 (178)
T PRK15423 98 VEDIIDSGNT 107 (178)
T ss_pred EeeecCchHH
Confidence 9999999965
No 31
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.60 E-value=2.1e-07 Score=84.53 Aligned_cols=113 Identities=27% Similarity=0.353 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCC----CeEEEEcCCchhcccccCCc-c-ceeeeh----HHHHHHHHhcCCCCCCeEEEeCCCCchHHH
Q 020556 204 AKLVANLITEAGA----DRVLACDLHSGQSMGYFDIP-V-DHVYCQ----PVILDYLASKTVSSNDLVVVSPDVGGVARA 273 (324)
Q Consensus 204 ak~vA~lL~~~G~----d~VitvDlHs~~~~~fF~ip-v-~nL~~~----~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA 273 (324)
.+.+++.|-.+|+ +.+++-..|++. ||+.. + .+-... ..+++.+.+.. .+-.+||+|+.||...|
T Consensus 5 ~~~~~~~~~~~~a~~~G~f~l~SG~~s~~---y~d~~~i~~~p~~~~~~~~~la~~i~~~~--~~~d~Ivgi~~gG~~~A 79 (202)
T PRK00455 5 AREFIEFLLEIGALLFGHFTLSSGRKSPY---YFDCRKLLSYPEALALLGRFLAEAIKDSG--IEFDVVAGPATGGIPLA 79 (202)
T ss_pred HHHHHHHHHHcCCeeCCCEEECCCCcCCe---eEeChhhhcCHHHHHHHHHHHHHHHHhcC--CCCCEEEecccCcHHHH
Confidence 4567777777775 344445555443 33422 1 111112 23334443321 13458999999999999
Q ss_pred HHHHHHcCCCCEEEEEeEeCCCCceeEEEeee-ecCCCeEEEEecccccCCC
Q 020556 274 RAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 274 ~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvG-DVkGk~vIIVDDIIdTGGs 324 (324)
..+|..|+ .++.++.|.+...+.. ..+.| .++||+|+||||+++||+|
T Consensus 80 ~~la~~L~-~~~~~~rk~~~~~g~~--~~~~~~~~~g~~VliVDDvi~tG~T 128 (202)
T PRK00455 80 AAVARALD-LPAIFVRKEAKDHGEG--GQIEGRRLFGKRVLVVEDVITTGGS 128 (202)
T ss_pred HHHHHHhC-CCEEEEecccCCCCCC--ceEEccCCCCCEEEEEecccCCcHH
Confidence 99999996 7999998866433221 12344 4689999999999999985
No 32
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.57 E-value=7.6e-08 Score=85.65 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcC---C--CCEEEEEeE--eCCCC----ceeE--EEeeeecCCCe
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS---D--APLAIVDKR--RHGHN----VAEV--MNLIGDVKGKV 311 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~---~--~~~~~~~K~--R~~~~----~~e~--~~lvGDVkGk~ 311 (324)
.+++.+.+...+.++++||+++.||..+|..+++.|+ + .++.++++. |+... .... ..+.++++||+
T Consensus 18 ~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~ 97 (176)
T PRK05205 18 RIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKR 97 (176)
T ss_pred HHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCE
Confidence 4455554421123578999999999999999999995 2 235665543 43221 1111 24566899999
Q ss_pred EEEEecccccCCC
Q 020556 312 AVMVDDMIDTAGW 324 (324)
Q Consensus 312 vIIVDDIIdTGGs 324 (324)
|||||||+|||+|
T Consensus 98 VLIVDDIidTG~T 110 (176)
T PRK05205 98 VILVDDVLYTGRT 110 (176)
T ss_pred EEEEecccCcHHH
Confidence 9999999999985
No 33
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.52 E-value=3.4e-07 Score=82.68 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=48.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeee--ecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIG--DVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvG--DVkGk~vIIVDDIIdTGGs 324 (324)
+.++||+++.||...|..+|..|+ .++.+..|.+ +.... ..+ -.+||+|+|||||++||+|
T Consensus 58 ~~d~Ivgi~~gGi~~A~~la~~L~-~~~i~~~k~~---~~~~~--~~~~~l~~G~~VLIVDDIi~TG~T 120 (187)
T TIGR01367 58 KVDFIVGPAMGGVILGYEVARQLS-VRSIFAEREG---GGMKL--RRGFAVKPGEKFVAVEDVVTTGGS 120 (187)
T ss_pred CCCEEEEEccCcHHHHHHHHHHhC-CCeEEEEEeC---CcEEE--eecccCCCCCEEEEEEeeecchHH
Confidence 567999999999999999999996 7988887765 11111 122 2589999999999999975
No 34
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.50 E-value=2e-07 Score=82.79 Aligned_cols=65 Identities=31% Similarity=0.477 Sum_probs=52.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHHcCCCC-----EEEEEeEeCCCCceeEEEeeeec-CCCeEEEEecccccCCC
Q 020556 257 SNDLVVVSPDVGGVARARAFAKKLSDAP-----LAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 257 ~~~~vVVsPD~Ga~kRA~~~A~~L~~~~-----~~~~~K~R~~~~~~e~~~lvGDV-kGk~vIIVDDIIdTGGs 324 (324)
.+..+||+|+.||...|..+|..|+ .+ +.+..|.+...+... .+.|++ +|++|+||||+++||+|
T Consensus 53 ~~~d~Ivg~~~gG~~~A~~la~~l~-~~~~~~~~~~~rk~~k~~g~~~--~~~g~~~~g~~VlIVDDvi~TG~T 123 (173)
T TIGR00336 53 LEFDVIAGPALGGIPIATAVSVKLA-KPGGDIPLCFNRKEAKDHGEGG--NIEGELLEGDKVVVVEDVITTGTS 123 (173)
T ss_pred CCCCEEEccccChHHHHHHHHHHhc-CcCCCceEEEEcCCcccCCCCC--ceecCCCCCCEEEEEeccccChHH
Confidence 3567999999999999999999996 68 888888765433211 245654 89999999999999985
No 35
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.43 E-value=4.3e-07 Score=74.53 Aligned_cols=78 Identities=31% Similarity=0.410 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeC---------CCCceeEE--EeeeecCCCeE
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH---------GHNVAEVM--NLIGDVKGKVA 312 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~---------~~~~~e~~--~lvGDVkGk~v 312 (324)
..++++|.+.. .+..+||++..||...|..++..|+ .+..+..+... ..+..... .....++||+|
T Consensus 15 ~~la~~i~~~~--~~~~~ivgi~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~v 91 (125)
T PF00156_consen 15 ERLAEQIKESG--FDFDVIVGIPRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRV 91 (125)
T ss_dssp HHHHHHHHHHT--TTSSEEEEETTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEE
T ss_pred HHHHHHHHHhC--CCCCEEEeehhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeecccccccceeE
Confidence 55677776653 4455699999999999999999996 57665544321 11111111 23447999999
Q ss_pred EEEecccccCCC
Q 020556 313 VMVDDMIDTAGW 324 (324)
Q Consensus 313 IIVDDIIdTGGs 324 (324)
+||||+++||+|
T Consensus 92 liVDDvi~tG~T 103 (125)
T PF00156_consen 92 LIVDDVIDTGGT 103 (125)
T ss_dssp EEEEEEESSSHH
T ss_pred EEEeeeEcccHH
Confidence 999999999975
No 36
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.40 E-value=6.7e-07 Score=81.45 Aligned_cols=66 Identities=30% Similarity=0.340 Sum_probs=50.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCc---eeE-E-EeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV---AEV-M-NLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~---~e~-~-~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+-.+||+|+.||..+|..+|..|+ .++.+..+++...+. .+. . ...++++||+|+||||+++||+|
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~T 155 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTT 155 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHH
Confidence 446899999999999999999997 798888776632221 111 1 12357899999999999999985
No 37
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.38 E-value=6e-07 Score=82.19 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=56.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCce-e--EEEeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-E--VMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~-e--~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+++++|+++.||..++..+++.|+.+++.++.++|+..+.. . ...+.++++||+|||||||++||+|
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~T 139 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGS 139 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHH
Confidence 56899999999999999999999877899999999753311 1 2346678999999999999999985
No 38
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.37 E-value=8.8e-07 Score=78.28 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=49.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCC-----------ceeEEEee--eecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-----------VAEVMNLI--GDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~-----------~~e~~~lv--GDVkGk~vIIVDDIIdTGGs 324 (324)
+..+|++|+.+|...|..+|+.|+ .++..+.|++.... ..+.+.+. ...+||+|+|||||++||+|
T Consensus 46 ~~d~ivgi~~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~T 124 (169)
T TIGR01090 46 NIDYIVGPEARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGT 124 (169)
T ss_pred CCCEEEeehhccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHH
Confidence 457999999999999999999997 78888776643111 00111221 13699999999999999975
No 39
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.32 E-value=1.4e-06 Score=78.87 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCC---C--EEEEEeEeCCCC-----ceeEE--EeeeecCCCeEE
Q 020556 246 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDA---P--LAIVDKRRHGHN-----VAEVM--NLIGDVKGKVAV 313 (324)
Q Consensus 246 l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~---~--~~~~~K~R~~~~-----~~e~~--~lvGDVkGk~vI 313 (324)
+++.|.+. +..++++||++..||...|..+++.|+ . + +.++...+-+.+ .+++. .+..+++||+|+
T Consensus 24 lA~~I~~~-~~~~~~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~Vl 101 (189)
T PLN02238 24 LAAQIASD-YAGKSPVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVL 101 (189)
T ss_pred HHHHHHHH-cCCCCcEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEE
Confidence 55556543 223568999999999999999999996 4 3 345655544221 12222 233579999999
Q ss_pred EEecccccCCC
Q 020556 314 MVDDMIDTAGW 324 (324)
Q Consensus 314 IVDDIIdTGGs 324 (324)
|||||+|||+|
T Consensus 102 iVDDIidTG~T 112 (189)
T PLN02238 102 LVEDIVDTGNT 112 (189)
T ss_pred EEecccchHHH
Confidence 99999999975
No 40
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.20 E-value=2.9e-06 Score=86.10 Aligned_cols=78 Identities=31% Similarity=0.382 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCE--EEEEeEeCCC-----Cc------e-eEEEeeee-cCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRHGH-----NV------A-EVMNLIGD-VKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~--~~~~K~R~~~-----~~------~-e~~~lvGD-VkG 309 (324)
.+.+.|.+......+.||..||.| ..+|+.+|+.|+ .|+ +++.|++.+. +. . ..+...++ ++|
T Consensus 263 ~~G~~La~~~~~~~d~Vv~vPd~g-~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~g 340 (445)
T PRK08525 263 KMGEELAKKFPIKADFVVPVPDSG-VPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEG 340 (445)
T ss_pred HHHHHHHHHhcccCCeEEECCchH-HHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCC
Confidence 344555443323457899999965 899999999997 676 6676664321 10 1 11233454 999
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+||||||+|+||+|
T Consensus 341 K~VlLVDDvitTG~T 355 (445)
T PRK08525 341 KRIVVIDDSIVRGTT 355 (445)
T ss_pred CeEEEEecccCcHHH
Confidence 999999999999975
No 41
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.18 E-value=6.2e-06 Score=77.33 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCC-------------ceeEEEeee-e-cCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-------------VAEVMNLIG-D-VKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~-------------~~e~~~lvG-D-VkG 309 (324)
.+++.+.+...+.+-.+|++++.+|...|..+|..|+ .|++++.|.+.... .++.+.+.. . .+|
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~-~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G 176 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFG-ADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKG 176 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHC-cCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCc
Confidence 3444444432223346889999999999999999997 79999988653211 112233321 2 689
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
++|+||||+++||||
T Consensus 177 ~rVLIVDDvi~TG~T 191 (238)
T PRK08558 177 DRVLIVDDIIRSGET 191 (238)
T ss_pred CEEEEEecccccCHH
Confidence 999999999999986
No 42
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=98.12 E-value=1.1e-05 Score=73.35 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCC---------------ceeEEEeeee-c
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN---------------VAEVMNLIGD-V 307 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~---------------~~e~~~lvGD-V 307 (324)
..+++.+.++..+.+-.+|++|+.++...|..+|..|+ .+++++.|...... ....+.+.|+ +
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l 114 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLG-VPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFL 114 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhC
Confidence 34445554443233456899999999999999999997 89999999854221 0112234453 3
Q ss_pred -CCCeEEEEecccccCCC
Q 020556 308 -KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 308 -kGk~vIIVDDIIdTGGs 324 (324)
+|++|+||||++.||||
T Consensus 115 ~~G~rVLIVDDvvtTGgT 132 (191)
T TIGR01744 115 SDQDRVLIIDDFLANGQA 132 (191)
T ss_pred CCcCEEEEEEehhccChH
Confidence 89999999999999986
No 43
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.11 E-value=1.3e-05 Score=72.80 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCC---Cce------------eEEEeeee--c
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH---NVA------------EVMNLIGD--V 307 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~---~~~------------e~~~lvGD--V 307 (324)
.+++.+.++..+.+-.+|++|+.+|...|..+|..|+ .|++++.|..... +.. +.+.+.++ -
T Consensus 37 ~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~ 115 (189)
T PRK09219 37 EIGKEFARRFKDEGITKILTIEASGIAPAVMAALALG-VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLS 115 (189)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCC
Confidence 3344443332233446899999999999999999997 7999999976432 111 12233332 3
Q ss_pred CCCeEEEEecccccCCC
Q 020556 308 KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 308 kGk~vIIVDDIIdTGGs 324 (324)
+|++|+||||++.||||
T Consensus 116 ~G~rVlIVDDviaTGgT 132 (189)
T PRK09219 116 EGDRVLIIDDFLANGQA 132 (189)
T ss_pred CCCEEEEEeehhhcChH
Confidence 89999999999999986
No 44
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=98.04 E-value=3.1e-05 Score=70.23 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=52.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeee-cCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGD-VKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGD-VkGk~vIIVDDIIdTGGs 324 (324)
+-..|++|..||..-|..+|..++ .|++++.|......... .+.|. .+|++|+||||++.||||
T Consensus 73 ~~d~I~g~~~~GiplA~~vA~~l~-~p~v~vRK~~k~~g~~~--~~~g~~~~g~rVlIVDDVitTGgS 137 (187)
T PRK13810 73 DVDTVAGVELGGVPLATAVSLETG-LPLLIVRKSVKDYGTGS--RFVGDLKPEDRIVMLEDVTTSGGS 137 (187)
T ss_pred CCCEEEEEccchHHHHHHHHHHhC-CCEEEEecCCCccCCCc--eEEccCCCcCEEEEEEeccCCChH
Confidence 456899999999999999999997 89999998865443221 24565 489999999999999986
No 45
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.04 E-value=1.7e-05 Score=71.33 Aligned_cols=66 Identities=27% Similarity=0.372 Sum_probs=52.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCC-c----------eeEEEeeeec--CCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-V----------AEVMNLIGDV--KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~-~----------~e~~~lvGDV--kGk~vIIVDDIIdTGGs 324 (324)
+-..||+|..+|.--|..+|.+|| .|++++.|.+.... . .+.+.+..+. +|.+|+||||+++||||
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lg-vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT 131 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELG-VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGT 131 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhC-CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChH
Confidence 456899999999999999999997 89999999764221 0 2334444443 79999999999999996
No 46
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=97.96 E-value=2.9e-05 Score=74.25 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=52.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCC-C-------------CceeEEEeeee--cCCCeEEEEecccc
Q 020556 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG-H-------------NVAEVMNLIGD--VKGKVAVMVDDMID 320 (324)
Q Consensus 257 ~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~-~-------------~~~e~~~lvGD--VkGk~vIIVDDIId 320 (324)
.+-.+|++|..+|...|..+|..|+ +|++++.|.... . +.++.|.+..+ .+|++|+||||.+.
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~-vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~ 205 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLN-VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMK 205 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecc
Confidence 3456899999999999999999996 899999887542 1 12334444332 48999999999999
Q ss_pred cCCC
Q 020556 321 TAGW 324 (324)
Q Consensus 321 TGGs 324 (324)
||||
T Consensus 206 TGgT 209 (268)
T TIGR01743 206 AGGT 209 (268)
T ss_pred cCHH
Confidence 9986
No 47
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=97.90 E-value=1.3e-05 Score=82.03 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeC--------------CCCceeEEEeeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRH--------------GHNVAEVMNLIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~--------------~~~~~e~~~lvGDVkG 309 (324)
-+.+.|.+......+.||..||.| ..+|..+|+.+| .|+.. +.|.|. .........+.++++|
T Consensus 276 ~~G~~La~~~~~~~D~Vv~vPdsg-~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~g 353 (469)
T PRK05793 276 RAGRQLYKEYPVDADIVIGVPDSG-IPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEG 353 (469)
T ss_pred HHHHHHHHhcCCCCCEEEEcCccH-HHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCC
Confidence 344555544322346889999996 899999999997 78864 233331 1111111123467999
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+||||||+|.||+|
T Consensus 354 k~VlLVDD~ItTGtT 368 (469)
T PRK05793 354 KRVVLIDDSIVRGTT 368 (469)
T ss_pred CEEEEEccccCchHH
Confidence 999999999999975
No 48
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.00011 Score=67.60 Aligned_cols=65 Identities=37% Similarity=0.506 Sum_probs=50.6
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCC-EEEEEeEeCCCCceeEEEeee-ecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAP-LAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~-~~~~~K~R~~~~~~e~~~lvG-DVkGk~vIIVDDIIdTGGs 324 (324)
+-.+|++|-.||+..|..+|.+|...+ +++..|+-.+++.. -.+.| .++|++|+||||+++||+|
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~hG~~--~~ieG~~~~G~kVvvVEDViTTG~S 127 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTG--GLIEGGEVKGEKVVVVEDVITTGGS 127 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHhccCCcEEEEeceeccCCCc--ceeEecCCCCCEEEEEEecccCCHh
Confidence 567999999999999999999984112 77887775555432 12344 5689999999999999986
No 49
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=97.82 E-value=8.3e-05 Score=76.28 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCC----CeEEEEcCCchhccc
Q 020556 159 NENLMELLIMIDACRRA---SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA----DRVLACDLHSGQSMG 231 (324)
Q Consensus 159 nd~LmELLl~idAlr~a---gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~----d~VitvDlHs~~~~~ 231 (324)
.+...+|---++..|.. +..+-.+..|-.+..-|+.+. .++++|-..|+ +.+++--.||+.
T Consensus 248 ~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~l~~~~al~fG~F~L~SG~~S~~--- 315 (477)
T PRK05500 248 KEQVKSLREEINQIRQQIVQESSSCDLWTPDVCLLNQHPHQ---------DLILQLYDIGCLLFGEYVQASGATFSY--- 315 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCccccccccCcHH---------HHHHHHHHCCCeEeCcEEECCcCcCCE---
Confidence 45555565555555543 223566788888887775442 24444444443 445555555543
Q ss_pred ccCCccceeeeh----HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeec
Q 020556 232 YFDIPVDHVYCQ----PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDV 307 (324)
Q Consensus 232 fF~ipv~nL~~~----~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDV 307 (324)
|+|.. .+... ..+++.+.+.....+-..|++|..||...|..+|..|+ .|+++..|+...++... .+.|.+
T Consensus 316 YiD~~--~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg-~p~v~vRKe~K~~G~~~--~ieG~~ 390 (477)
T PRK05500 316 YIDLR--KIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLH-HPMIFPRKEVKAHGTRR--LIEGNF 390 (477)
T ss_pred EEECh--hhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEecCcCccCCCc--eEecCC
Confidence 33422 12112 22333333332223345899999999999999999997 79999999865444322 356665
Q ss_pred -CCCeEEEEecccccCCC
Q 020556 308 -KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 308 -kGk~vIIVDDIIdTGGs 324 (324)
+|++|+||||++.||||
T Consensus 391 ~~G~rVlIVDDViTTGgS 408 (477)
T PRK05500 391 HPGETVVVVDDILITGKS 408 (477)
T ss_pred CCcCEEEEEEeccccCHH
Confidence 89999999999999986
No 50
>PRK09213 pur operon repressor; Provisional
Probab=97.81 E-value=7.9e-05 Score=71.35 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCC-CC-------------ceeEEEeee-ec-CC
Q 020556 246 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG-HN-------------VAEVMNLIG-DV-KG 309 (324)
Q Consensus 246 l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~-~~-------------~~e~~~lvG-DV-kG 309 (324)
+++.+.++..+.+-.+|++|..+|...|..+|..|+ .|++++.|.... .+ .++.|.+-. .+ +|
T Consensus 118 i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~-vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G 196 (271)
T PRK09213 118 IGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLN-VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEG 196 (271)
T ss_pred HHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCc
Confidence 334443332223456899999999999999999996 899999886532 11 123333322 23 89
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
.+|+||||++.||||
T Consensus 197 ~rVLIVDDv~~TGgT 211 (271)
T PRK09213 197 SRVLIVDDFMKAGGT 211 (271)
T ss_pred CEEEEEeeecccCHh
Confidence 999999999999996
No 51
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=97.72 E-value=6.4e-05 Score=68.85 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=55.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCc-e-e-EEEeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-A-E-VMNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~-~-e-~~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
+++++|+==.||..++..+.+.+..+++..+.++|+..+. . . ...+..|++||+|||||||++||+|
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~T 137 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGT 137 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHH
Confidence 4689999999999999999999987789999999975321 1 1 2245668999999999999999985
No 52
>PRK06031 phosphoribosyltransferase; Provisional
Probab=97.71 E-value=0.00013 Score=68.44 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCC---C------------CceeEEEee----e
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG---H------------NVAEVMNLI----G 305 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~---~------------~~~e~~~lv----G 305 (324)
.+++.|.++....+..+||++..+|..-|..+|..||.-.+.-+.|.|.. + +....+.+. .
T Consensus 71 ~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~ 150 (233)
T PRK06031 71 ALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLP 150 (233)
T ss_pred HHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccc
Confidence 35555555432334579999999999999999999973223333433321 0 011111121 2
Q ss_pred ecCCCeEEEEecccccCCC
Q 020556 306 DVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 306 DVkGk~vIIVDDIIdTGGs 324 (324)
.++||+|+||||+++||+|
T Consensus 151 ~~~GkrVLIVDDVitTG~T 169 (233)
T PRK06031 151 LLEGRRVALIDDVISSGAS 169 (233)
T ss_pred cCCCCEEEEEEeEccccHH
Confidence 3799999999999999985
No 53
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.70 E-value=0.00011 Score=64.59 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEE-EEE--eEeC-CCCceeEEEeeeecCCCeEEEEecccc
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA-IVD--KRRH-GHNVAEVMNLIGDVKGKVAVMVDDMID 320 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~-~~~--K~R~-~~~~~e~~~lvGDVkGk~vIIVDDIId 320 (324)
.+++.|.+. .+.++||++-.||.--|..++..|+ .+.. ++. ..+. ..+..+...-. +.+||+|+|||||+|
T Consensus 21 ~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~-~~~v~~i~~ssY~~~~~~~~~~~~~~-~~~gk~VLIVDDIiD 95 (156)
T PRK09177 21 ALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELG-IRLVDTVCISSYDHDNQGELKVLKRA-EGDGEGFLVVDDLVD 95 (156)
T ss_pred HHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcC-CCceeEEEEEEECCCcCCcEEEecCC-CcCcCEEEEEeeeeC
Confidence 444445432 2357999999999999999999997 5642 221 1111 11222222111 479999999999999
Q ss_pred cCCC
Q 020556 321 TAGW 324 (324)
Q Consensus 321 TGGs 324 (324)
||+|
T Consensus 96 TG~T 99 (156)
T PRK09177 96 TGGT 99 (156)
T ss_pred CHHH
Confidence 9975
No 54
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00018 Score=64.80 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcC-CCCEEEEEeEeC--CCC---ceeEE-EeeeecCCCeEEEEe
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS-DAPLAIVDKRRH--GHN---VAEVM-NLIGDVKGKVAVMVD 316 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~-~~~~~~~~K~R~--~~~---~~e~~-~lvGDVkGk~vIIVD 316 (324)
..++++|.+.. ..+++++|+-=.|+...+..+.+++. ..++.++.-.+= +.. .+.+. .+..|++||+|+|||
T Consensus 22 ~ela~~I~~~y-~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVe 100 (178)
T COG0634 22 KELAAQITEDY-GGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVE 100 (178)
T ss_pred HHHHHHHHHhh-CCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEe
Confidence 34566665543 45899999999999999999999885 123555554442 221 12222 456789999999999
Q ss_pred cccccCCC
Q 020556 317 DMIDTAGW 324 (324)
Q Consensus 317 DIIdTGGs 324 (324)
||+|||.|
T Consensus 101 DIiDsG~T 108 (178)
T COG0634 101 DIIDSGLT 108 (178)
T ss_pred cccccChh
Confidence 99999965
No 55
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=97.68 E-value=5.1e-05 Score=77.15 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCC------C--Ccee----EEEeeeecCCCe
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------H--NVAE----VMNLIGDVKGKV 311 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~------~--~~~e----~~~lvGDVkGk~ 311 (324)
-+.+.|.+......+.||..||.|. ..|..+|+.+| .|+.. +.|.|.. . .... ...+.+.++||+
T Consensus 259 ~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~ 336 (442)
T PRK08341 259 RMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKR 336 (442)
T ss_pred HHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCCE
Confidence 4555565543333578899999998 69999999997 78864 7787631 1 1111 113456789999
Q ss_pred EEEEecccccCCC
Q 020556 312 AVMVDDMIDTAGW 324 (324)
Q Consensus 312 vIIVDDIIdTGGs 324 (324)
|+||||+|+||.|
T Consensus 337 VlLVDD~IttGtT 349 (442)
T PRK08341 337 VVLVDDSIVRGTT 349 (442)
T ss_pred EEEEeeeeccHHH
Confidence 9999999999975
No 56
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=97.59 E-value=0.0001 Score=68.19 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcC--CCC--EEEEEe--EeCCCC---ceeEE-EeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLS--DAP--LAIVDK--RRHGHN---VAEVM-NLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~--~~~--~~~~~K--~R~~~~---~~e~~-~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
++++||+-=.||..-|..+++.|+ +.+ +.+++= .|++.. .+.+. .+..+++||+|||||||+|||.|
T Consensus 57 ~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~T 133 (211)
T PTZ00271 57 NPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAIT 133 (211)
T ss_pred CCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHH
Confidence 467899999999999999999995 123 444432 332221 12222 33448999999999999999964
No 57
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00031 Score=63.50 Aligned_cols=78 Identities=31% Similarity=0.365 Sum_probs=55.5
Q ss_pred HHHHHH-HHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEE--eEeCCCCc---eeEEEeeeecCCCeEEEEec
Q 020556 244 PVILDY-LASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVD--KRRHGHNV---AEVMNLIGDVKGKVAVMVDD 317 (324)
Q Consensus 244 ~~l~~y-l~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~--K~R~~~~~---~e~~~lvGDVkGk~vIIVDD 317 (324)
..+++. +.++ ..+-.+||+--.-++..|..+|..|| .++++.+ |.|...+. ..+..-.+.|+||+|+||||
T Consensus 73 ~am~Dm~m~~~--~~evDvVvGIa~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDD 149 (203)
T COG0856 73 EAMADMIMEKV--SFEVDVVVGIAISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDD 149 (203)
T ss_pred HHHHHHHHHhc--cceeEEEEEEeecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeecccccccCceEEEEec
Confidence 345552 3333 45678999999999999999999997 6877664 55542211 11123345799999999999
Q ss_pred ccccCCC
Q 020556 318 MIDTAGW 324 (324)
Q Consensus 318 IIdTGGs 324 (324)
+++||.+
T Consensus 150 vittG~T 156 (203)
T COG0856 150 VITTGST 156 (203)
T ss_pred ccccChh
Confidence 9999975
No 58
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=97.41 E-value=0.00031 Score=66.28 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCC----------C-----CEEEEEeEeCCCC--ceeEE-Eeeeec
Q 020556 246 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD----------A-----PLAIVDKRRHGHN--VAEVM-NLIGDV 307 (324)
Q Consensus 246 l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~----------~-----~~~~~~K~R~~~~--~~e~~-~lvGDV 307 (324)
+|..|.+. ...++++||+-=.||...|..+.+.|.. . ++.-+.-.|.... .+.+. ....++
T Consensus 70 LA~~I~~d-y~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l 148 (241)
T PTZ00149 70 LAYDIKQV-YGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCL 148 (241)
T ss_pred HHHHHHHH-cCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccccccc
Confidence 34444432 2357899999999999999999888852 1 2333333333211 22222 233479
Q ss_pred CCCeEEEEecccccCCC
Q 020556 308 KGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 308 kGk~vIIVDDIIdTGGs 324 (324)
+||+|||||||+|||.|
T Consensus 149 ~gk~VLIVDDIidTG~T 165 (241)
T PTZ00149 149 KDKHVLIVEDIIDTGNT 165 (241)
T ss_pred CCCEEEEEEeEeChHHH
Confidence 99999999999999975
No 59
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.35 E-value=0.00059 Score=62.37 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeC--CC---CceeEE-Eeeee-cCCCeEEEEe
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH--GH---NVAEVM-NLIGD-VKGKVAVMVD 316 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~--~~---~~~e~~-~lvGD-VkGk~vIIVD 316 (324)
..+|+.|.+. +..-.+||+.--||.--|+.++..|+-.++..+.-..- .. ...++. .+.-| ++||+|+|||
T Consensus 17 ~~lA~kI~~s--~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVD 94 (192)
T COG2236 17 RALAEKIRAS--GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVD 94 (192)
T ss_pred HHHHHHHHHc--CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEe
Confidence 4566666643 34567999999999999999999998546655543321 11 111221 12225 8999999999
Q ss_pred cccccCCC
Q 020556 317 DMIDTAGW 324 (324)
Q Consensus 317 DIIdTGGs 324 (324)
||.|||.|
T Consensus 95 DI~DTG~T 102 (192)
T COG2236 95 DIVDTGET 102 (192)
T ss_pred cccCchHh
Confidence 99999975
No 60
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.31 E-value=0.0091 Score=57.33 Aligned_cols=125 Identities=21% Similarity=0.316 Sum_probs=89.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEe-ccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQL-QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i-~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agA 177 (324)
+.+=...+...+|..+|+.||++...+.-.+...++..+.. ..+++|++|+||...... -.. +.-.+++||++||
T Consensus 157 vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~T-G~T---l~~aa~~Lk~~GA 232 (285)
T PRK00934 157 LVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIIST-GGT---MATAIKILKEQGA 232 (285)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCcccc-HHH---HHHHHHHHHHCCC
Confidence 44444566789999999999999887776666666555442 347899999999876542 232 3466788999999
Q ss_pred CeEEEEE--cCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHH
Q 020556 178 KNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLA 251 (324)
Q Consensus 178 krItlVi--PYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~ 251 (324)
++|.++. |.|. .... +-|...|+++|++.|-+.. ++..++..+++++.|+
T Consensus 233 ~~V~~~~~H~i~~---------------~~a~-~~l~~~~i~~i~~tnti~~--------~~~~~~va~~la~~i~ 284 (285)
T PRK00934 233 KKVYVACVHPVLV---------------GDAI-LKLYNAGVDEIIVTDTLES--------EVSKISVAPLIADLLK 284 (285)
T ss_pred CEEEEEEEeeccC---------------cHHH-HHHHhCCCCEEEEcCCCCC--------CceEEEcHHHHHHHHh
Confidence 9999877 4443 1112 2344568999999998742 3457888899998874
No 61
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.29 E-value=0.015 Score=56.52 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=91.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEe--ccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i--~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.+.+-.......+|+.+|+.||+++.-+.-.|..+++..+.. .+++.|++|+||...... -.. |.-.++.||++
T Consensus 162 ~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidT-G~T---l~~aa~~Lk~~ 237 (301)
T PRK07199 162 PLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVST-GRT---LIEAARQLRAA 237 (301)
T ss_pred cEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCc-HHH---HHHHHHHHHHC
Confidence 344445566779999999999999887777776666555443 357899999999876543 222 45677999999
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHh
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~ 252 (324)
||++|.++.-.- .++.....+ |+..|+++|++-|-+. .|..-++..+++++.|+.
T Consensus 238 GA~~V~~~~tHg-------------vfs~~a~~~-l~~~~i~~iv~Tdti~--------~~~~~~sva~lla~~i~~ 292 (301)
T PRK07199 238 GAASPDCVVVHA-------------LFAGDAYSA-LAAAGIARVVSTDTVP--------HPSNAISLAPLLAEALRR 292 (301)
T ss_pred CCcEEEEEEEee-------------eCChHHHHH-HHhCCCCEEEEeCCcc--------CCCCEEehHHHHHHHHHH
Confidence 999999877331 112222333 4557899999999763 223358888999999875
No 62
>PRK11595 DNA utilization protein GntX; Provisional
Probab=97.23 E-value=5.4e-05 Score=70.07 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.0
Q ss_pred EeeeecCCCeEEEEecccccCCC
Q 020556 302 NLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 302 ~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
.+.++++||+++|||||++||.|
T Consensus 180 ~~~~~~~~~~vllvDDv~tTG~T 202 (227)
T PRK11595 180 RLELPVQGQHMAIVDDVVTTGST 202 (227)
T ss_pred ccCCCCCCCEEEEEeeeecchHH
Confidence 44678999999999999999964
No 63
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.15 E-value=0.026 Score=55.37 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=91.6
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 98 RIKLFS-GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
++.|++ ......+|+.+|+.||+++.-+...+-...+....+..+|.|++|+||...... -. -|.-.+++|++.|
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~~~~~~i~gdV~gk~viIVDDIidT-G~---Tl~~aa~~Lk~~G 245 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSEREEGYIIGDVAGKKAILIDDILNT-GK---TFAEAAKIVEREG 245 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCcceeeccccccCCCEEEEEcceeCc-HH---HHHHHHHHHHhCC
Confidence 444444 566789999999999998875553332212222345568999999999776543 12 2567789999999
Q ss_pred CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 177 AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
|++|.++.-..=++ ... .+.|+..|+++|++-|-+.... .. .-++..++..+++++.|+..
T Consensus 246 A~~V~~~~tHgif~-------------~~a-~~~l~~s~i~~iv~TdTi~~~~-~~-~~k~~~isva~lla~~i~~~ 306 (323)
T PRK02458 246 ATEIYAVASHGLFA-------------GGA-AEVLENAPIKEILVTDSVATKE-RV-PKNVTYLSASELIADAIIRI 306 (323)
T ss_pred CCcEEEEEEChhcC-------------chH-HHHHhhCCCCEEEEECCcCCch-hc-CCCcEEEEhHHHHHHHHHHH
Confidence 99999877554222 222 2346667999999999874321 11 12456788889999998653
No 64
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.14 E-value=0.013 Score=57.36 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=95.6
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhCCceeceEEeec-CCCceEEE-eccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHh
Q 020556 98 RIKLFS-GTANPALSQEIACYMGVELGKINIKRF-ADGEIYVQ-LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg~~l~~i~~~rF-pDGE~~V~-i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ 174 (324)
++.|+| -.+...-|+.+|+.||.++.-++-.|- .+.|..+. +..+|+||+++||..+-.. -. -+.-.+++||+
T Consensus 164 d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdT-gG---Ti~~Aa~~Lk~ 239 (314)
T COG0462 164 DPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDT-GG---TIAKAAKALKE 239 (314)
T ss_pred CcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccc-cH---HHHHHHHHHHH
Confidence 355555 345679999999999999988888886 56665554 4579999999998654221 11 35678899999
Q ss_pred cCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 175 agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
.||++|.+..-.==+ + ....+.|++..+++|++-|-=-......++ .+..++..+++++.|...
T Consensus 240 ~GAk~V~a~~tH~vf-------------s-~~a~~~l~~~~i~~vivTnTi~~~~~~~~~-~~~~isva~liaeaI~ri 303 (314)
T COG0462 240 RGAKKVYAAATHGVF-------------S-GAALERLEASAIDEVIVTDTIPLPEKKKIP-KVSVISVAPLIAEAIRRI 303 (314)
T ss_pred CCCCeEEEEEEchhh-------------C-hHHHHHHhcCCCCEEEEeCCcccccccccC-ceEEEEhHHHHHHHHHHH
Confidence 999999976532211 1 234577777779999999843211111222 467889999999998763
No 65
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.12 E-value=0.023 Score=55.20 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=93.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHhC-CceeceEEeecCC--Cc-eEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHH
Q 020556 97 NRIKLFSGTANPALSQEIACYMG-VELGKINIKRFAD--GE-IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDAC 172 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg-~~l~~i~~~rFpD--GE-~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAl 172 (324)
..+.|=...+...+|+.+|+.|+ .+..-+...|..+ ++ ....+..+|.|++|+||..+... -.. +.-.++.|
T Consensus 149 ~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~T-G~T---l~~aa~~L 224 (304)
T PRK03092 149 NVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDT-GGT---IAGAVRAL 224 (304)
T ss_pred CcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCc-HHH---HHHHHHHH
Confidence 33544456677789999999999 8888887777533 22 34456778999999999876542 232 45667899
Q ss_pred HhcCCCeEEEEE--cCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHH
Q 020556 173 RRASAKNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYL 250 (324)
Q Consensus 173 r~agAkrItlVi--PYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl 250 (324)
++.||++|.++. |.|. ...+-+ |...|+++|++.|-+... .....-++..++..+++++.|
T Consensus 225 k~~Ga~~I~~~~tH~v~~---------------~~a~~~-l~~~~~~~i~~t~tip~~-~~~~~~~~~~~sva~~la~~i 287 (304)
T PRK03092 225 KEAGAKDVIIAATHGVLS---------------GPAAER-LKNCGAREVVVTDTLPIP-EEKRFDKLTVLSIAPLLARAI 287 (304)
T ss_pred HhcCCCeEEEEEEcccCC---------------hHHHHH-HHHCCCCEEEEeeeeccc-hhhcCCCeEEEEhHHHHHHHH
Confidence 999999999887 3332 122233 445689999999986321 111123456788889999998
Q ss_pred Hhc
Q 020556 251 ASK 253 (324)
Q Consensus 251 ~~~ 253 (324)
...
T Consensus 288 ~~~ 290 (304)
T PRK03092 288 REV 290 (304)
T ss_pred HHH
Confidence 653
No 66
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.10 E-value=0.024 Score=55.56 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=94.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHhC-CceeceEEeecCCCc-eEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHh
Q 020556 97 NRIKLFSGTANPALSQEIACYMG-VELGKINIKRFADGE-IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg-~~l~~i~~~rFpDGE-~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ 174 (324)
..+.+-...++...|+.+|+.|| ++..-+.-.|..+++ ....+..+|.|++|+||......- .. |.-.+++||+
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG-~T---l~~aa~~Lk~ 242 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTA-GT---LCAAAAALKQ 242 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCch-HH---HHHHHHHHHH
Confidence 34555556778899999999997 777666655554443 344566789999999998766432 22 4667899999
Q ss_pred cCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 175 agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
+||++|.++.-.-=+ +...+-++ +..|+++|++-|-+-........-++..++..+++++.|...
T Consensus 243 ~GA~~V~~~~THgvf-------------s~~a~~~l-~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~ 307 (319)
T PRK04923 243 RGALKVVAYITHPVL-------------SGPAVDNI-NNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRI 307 (319)
T ss_pred CCCCEEEEEEECccc-------------CchHHHHH-hhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 999999987655322 22223344 557999999999863211111122466788899999998653
No 67
>PLN02440 amidophosphoribosyltransferase
Probab=97.09 E-value=0.00069 Score=69.60 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCCC------------CceeE-EEe-eeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------------NVAEV-MNL-IGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~~------------~~~e~-~~l-vGDVkG 309 (324)
.+++.|.+.....-+.+|.-||.| ...|..+|+.++ .|+.. +-|.|... ..+.. ... ..+++|
T Consensus 263 ~~g~~La~~~~~~~d~vvpVP~s~-~~~A~~la~~lg-iP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~g 340 (479)
T PLN02440 263 EFGEILATEIPVDCDVVIPVPDSG-RVAALGYAAKLG-VPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEG 340 (479)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcH-HHHHHHHHHHhC-CCchhheEEEeeccccccCcchhhhhhhheeeeecccccccC
Confidence 455556554322346677778776 789999999996 67642 22333210 00111 122 256999
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+|+||||+|+||.|
T Consensus 341 k~VlLVDDiittGtT 355 (479)
T PLN02440 341 KRVVVVDDSIVRGTT 355 (479)
T ss_pred ceEEEEeceeCcHHH
Confidence 999999999999964
No 68
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.98 E-value=0.049 Score=53.30 Aligned_cols=136 Identities=10% Similarity=0.130 Sum_probs=90.7
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCC--C-ceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFAD--G-EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpD--G-E~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
+.|=...+...+|+.+|+.||.++.-++-++-.+ + +....+..+++|++|+||...... -. -|.-.+++|++.
T Consensus 168 vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidT-G~---Tl~~aa~~Lk~~ 243 (320)
T PRK02269 168 VVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDT-AG---TICHAADALAEA 243 (320)
T ss_pred EEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCc-HH---HHHHHHHHHHHC
Confidence 4444456677999999999999876544443322 1 223355678999999999776532 12 256778999999
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
||++|.++.-.-=+ +...+-++ ...|+++|++-|-+- +....+.-++..++..+++++.|+..
T Consensus 244 GA~~V~~~~tHglf-------------~~~a~~~l-~~~~i~~iv~Tdti~-~~~~~~~~k~~~isva~~la~~i~~~ 306 (320)
T PRK02269 244 GATEVYASCTHPVL-------------SGPALDNI-QKSAIEKLVVLDTIY-LPEERLIDKIEQISIADLLGEAIIRI 306 (320)
T ss_pred CCCEEEEEEECccc-------------CchHHHHH-HhCCCCEEEEeCCCC-CccccccCCeEEEEhHHHHHHHHHHH
Confidence 99999987755322 22223333 457899999999873 21121222567788899999998753
No 69
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=96.93 E-value=0.0014 Score=66.55 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCC------CCc------ee-EE-EeeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------HNV------AE-VM-NLIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~------~~~------~e-~~-~lvGDVkG 309 (324)
.+.+.|.++.....+.||--||.| ...|..+|+.+| .|+.. +.|+|.. .+. ++ .. .+.+.++|
T Consensus 261 ~~g~~La~~~~~~~D~Vv~VP~sg-~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~g 338 (442)
T TIGR01134 261 RMGEKLARESPVEADVVIPVPDSG-RSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRG 338 (442)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCH-HHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCC
Confidence 455666554322345677778885 889999999997 67753 4454321 000 10 11 23457899
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+|+||||+|.||.|
T Consensus 339 k~v~lvDD~ittG~T 353 (442)
T TIGR01134 339 KRVVLVDDSIVRGTT 353 (442)
T ss_pred CEEEEEeccccccHH
Confidence 999999999999964
No 70
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=96.89 E-value=0.048 Score=52.95 Aligned_cols=136 Identities=11% Similarity=0.126 Sum_probs=94.7
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHh-CCceeceEEeecCCCce-EEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHH
Q 020556 97 NRIKLFS-GTANPALSQEIACYM-GVELGKINIKRFADGEI-YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACR 173 (324)
Q Consensus 97 ~~~~Ifs-gss~~~LA~~Ia~~L-g~~l~~i~~~rFpDGE~-~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr 173 (324)
.++.|++ -.+...+|+.+++.| +.+.+-+.-.|..++.. ..++.+++.|++|+||...... -.. +.-.+++++
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~T-G~T---l~~a~~~l~ 226 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDT-AGT---ITKGAALLH 226 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccc-hHH---HHHHHHHHH
Confidence 3454554 456779999999999 78888777776554432 3456778999999999876532 222 456678999
Q ss_pred hcCCCeEEEEE--cCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHH
Q 020556 174 RASAKNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLA 251 (324)
Q Consensus 174 ~agAkrItlVi--PYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~ 251 (324)
+.|+++|.++. |-|+ ...+ +.|+..+++.|++.|-+.......|+ .+..++..++|++.|.
T Consensus 227 ~~Ga~~v~~~~tH~v~~---------------~~a~-~~l~~~~~~~iv~t~ti~~~~~~~~~-~~~~~~v~~~la~~i~ 289 (302)
T PLN02369 227 QEGAREVYACATHAVFS---------------PPAI-ERLSSGLFQEVIVTNTIPVSEKNYFP-QLTVLSVANLLGETIW 289 (302)
T ss_pred hCCCCEEEEEEEeeeeC---------------HHHH-HHHHhCCCCEEEEeCCCCChhhcccC-CceEEEHHHHHHHHHH
Confidence 99999999888 5553 1112 34555689999999987432212233 5677888899999986
Q ss_pred hc
Q 020556 252 SK 253 (324)
Q Consensus 252 ~~ 253 (324)
..
T Consensus 290 ~~ 291 (302)
T PLN02369 290 RV 291 (302)
T ss_pred HH
Confidence 53
No 71
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.80 E-value=0.063 Score=52.29 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=92.9
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceE-EEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIY-VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~-V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agA 177 (324)
+.+=.......+|+.+|+.||++..-++-.+..+++.. ..+.+++.|++|+||...... -.. +.-.++.+++.|+
T Consensus 161 vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~T-G~T---~~~a~~~l~~~Ga 236 (309)
T PRK01259 161 VVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDT-AGT---LCKAAEALKERGA 236 (309)
T ss_pred EEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCc-HHH---HHHHHHHHHccCC
Confidence 44444567889999999999999887776666665543 355678999999999876542 222 3566789999999
Q ss_pred CeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 178 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 178 krItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
++|.++.-+.= ++...+ +.|...++|+|++.|-+.........-++..++..+++++.|...
T Consensus 237 ~~v~~~~tH~i-------------~~~~a~-~~l~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~~ 298 (309)
T PRK01259 237 KSVYAYATHPV-------------LSGGAI-ERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRI 298 (309)
T ss_pred CEEEEEEEeee-------------CChHHH-HHHhcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHHH
Confidence 99998774211 111112 334556899999999874221111112456788889999998763
No 72
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=96.66 E-value=0.0054 Score=63.12 Aligned_cols=79 Identities=24% Similarity=0.225 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCC------------CCceeE-EEeeee-cC
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------------HNVAEV-MNLIGD-VK 308 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~------------~~~~e~-~~lvGD-Vk 308 (324)
..+.+.|.+.... +-.+||..=.++..-|..+|+.++ .++.. +-|.|-. ...++. .+..++ ++
T Consensus 282 ~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~ 359 (479)
T PRK09123 282 KNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESG-IPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIE 359 (479)
T ss_pred HHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcC-CCeeheEEEEeecCccccccccccccccEEEEecccccccC
Confidence 3466666654322 334555544457779999999997 67752 2243321 011111 122333 89
Q ss_pred CCeEEEEecccccCCC
Q 020556 309 GKVAVMVDDMIDTAGW 324 (324)
Q Consensus 309 Gk~vIIVDDIIdTGGs 324 (324)
||+||||||+|+||+|
T Consensus 360 gk~vvlvDD~i~tG~T 375 (479)
T PRK09123 360 GKRVVLVDDSIVRGTT 375 (479)
T ss_pred CCEEEEEeceeCchHH
Confidence 9999999999999975
No 73
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.55 E-value=0.14 Score=52.50 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=93.5
Q ss_pred CEEEEEC-CCCHHHHHHHHHHhC------CceeceEEeecCCCceE-EEeccCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 98 RIKLFSG-TANPALSQEIACYMG------VELGKINIKRFADGEIY-VQLQESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 98 ~~~Ifsg-ss~~~LA~~Ia~~Lg------~~l~~i~~~rFpDGE~~-V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
+..|++- ..+..-|+.+|+.|+ .++.-+.-.|..++|+. ..+..+|.|++|+||..+... -.. |.-.+
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdT-G~T---l~~aa 355 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDT-SGT---LCEAA 355 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCc-HHH---HHHHH
Confidence 3445543 345688999999997 56666666666667654 345679999999999876543 233 45668
Q ss_pred HHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccc-cCCccceeeehHHHHH
Q 020556 170 DACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY-FDIPVDHVYCQPVILD 248 (324)
Q Consensus 170 dAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~f-F~ipv~nL~~~~~l~~ 248 (324)
.+|++.||++|.++.-.- .++...+.++ ...|+++|++-|-+.. .... ..-++..++..++|++
T Consensus 356 ~~Lk~~GA~~V~~~~THg-------------lfs~~A~~rl-~~s~i~~IvvTdTIp~-~~~~~~~~k~~visVA~llAe 420 (439)
T PTZ00145 356 KQLKKHGARRVFAFATHG-------------LFSGPAIERI-EASPLEEVVVTDTVKS-NKNIDSCKKITKLSVSVLVAD 420 (439)
T ss_pred HHHHHcCCCEEEEEEEcc-------------cCChhHHHHH-hcCCCCEEEEeCCCcC-chhhcccCCeEEEEhHHHHHH
Confidence 889999999999876432 2333334444 5579999999998632 1111 1124667888999999
Q ss_pred HHHhc
Q 020556 249 YLASK 253 (324)
Q Consensus 249 yl~~~ 253 (324)
.|...
T Consensus 421 aI~~i 425 (439)
T PTZ00145 421 AIRRI 425 (439)
T ss_pred HHHHH
Confidence 98763
No 74
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.48 E-value=0.13 Score=50.68 Aligned_cols=135 Identities=14% Similarity=0.132 Sum_probs=91.9
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC-CceeceEEeecCCCc-eEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHh
Q 020556 98 RIKLFS-GTANPALSQEIACYMG-VELGKINIKRFADGE-IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg-~~l~~i~~~rFpDGE-~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ 174 (324)
++.|++ -.+...+|+.+|+.|+ .+..-+.-.+-.+++ ....+..++.|++|+||...... -.. +.-.++++|+
T Consensus 180 ~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~T-G~T---~~~a~~~L~~ 255 (330)
T PRK02812 180 DIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDT-GGT---ICEGARLLRK 255 (330)
T ss_pred CeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCc-HHH---HHHHHHHHhc
Confidence 454554 4567789999999995 787777666654443 23445678999999999776532 122 4566799999
Q ss_pred cCCCeEEEEE--cCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHh
Q 020556 175 ASAKNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (324)
Q Consensus 175 agAkrItlVi--PYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~ 252 (324)
.||++|.++. |-|+ ...+.+ |...++|+|++.|-+......-|+ ++..++..+++++.|..
T Consensus 256 ~Ga~~v~~~~tH~v~s---------------~~a~~~-l~~~~id~iv~tnti~~~~~~~~~-~~~~~~va~lla~~i~~ 318 (330)
T PRK02812 256 EGAKQVYACATHAVFS---------------PPAIER-LSSGLFEEVIVTNTIPVPEERRFP-QLKVLSVANMLGEAIWR 318 (330)
T ss_pred cCCCeEEEEEEcccCC---------------hHHHHH-HhhCCCCEEEEeCCCCChhhcccC-CceEEEHHHHHHHHHHH
Confidence 9999999988 6554 122333 345689999999987531111132 46678888999998865
Q ss_pred c
Q 020556 253 K 253 (324)
Q Consensus 253 ~ 253 (324)
.
T Consensus 319 ~ 319 (330)
T PRK02812 319 I 319 (330)
T ss_pred H
Confidence 3
No 75
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.39 E-value=0.18 Score=49.67 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=92.8
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhCCceeceEEeecCCCceE-EEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 98 RIKLFS-GTANPALSQEIACYMGVELGKINIKRFADGEIY-VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~-V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
+..|++ -......|+.+|+.||.+..-++-.+...++.. ..+..++.|++|+||...... -.. +...+++++++
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~T-G~T---l~~aa~~Lk~~ 244 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDT-GGT---VIAAAKLLKKQ 244 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccc-hHH---HHHHHHHHHHc
Confidence 444444 455779999999999999887776665544332 344578999999999876542 233 45667899999
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHH---HHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHh
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANL---ITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~l---L~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~ 252 (324)
||++|.++.-.-= ++....-++ ++..|+++|++-|-+.... ....-++..++..+++++.|..
T Consensus 245 GA~~V~~~atHgl-------------f~~~a~~~l~~~~~~~~i~~iv~Tntip~~~-~~~~~~~~~vsva~~la~~i~~ 310 (332)
T PRK00553 245 KAKKVCVMATHGL-------------FNKNAIQLFDEAFKKKLIDKLFVSNSIPQTK-FEKKPQFKVVDLAHLYEEVLLC 310 (332)
T ss_pred CCcEEEEEEEeee-------------cCchHHHHHHhccccCCCCEEEEeCCccCcc-cccCCCeEEEEhHHHHHHHHHH
Confidence 9999998764421 222333344 3345899999999874221 1111246678889999999865
No 76
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0075 Score=54.61 Aligned_cols=68 Identities=18% Similarity=0.416 Sum_probs=44.5
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHHcCC------CC--EEEE--EeEeCCCCceeEEEeee-----ecCCCeEEEEecccc
Q 020556 256 SSNDLVVVSPDVGGVARARAFAKKLSD------AP--LAIV--DKRRHGHNVAEVMNLIG-----DVKGKVAVMVDDMID 320 (324)
Q Consensus 256 ~~~~~vVVsPD~Ga~kRA~~~A~~L~~------~~--~~~~--~K~R~~~~~~e~~~lvG-----DVkGk~vIIVDDIId 320 (324)
.....++++-=+|+.+.-..+-++|.+ .| +.++ .-.++.....+ +.++| +++||+|+|||||+|
T Consensus 58 g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~-iqiig~d~l~~ltgK~VliVeDIvd 136 (216)
T KOG3367|consen 58 GNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGD-IQIIGGDDLSTLTGKNVLIVEDIVD 136 (216)
T ss_pred CCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCC-ceeecCCCHHHhcCCcEEEEEeecc
Confidence 356778999999999998877777654 12 2222 22222221111 23444 589999999999999
Q ss_pred cCCC
Q 020556 321 TAGW 324 (324)
Q Consensus 321 TGGs 324 (324)
||.+
T Consensus 137 TGrT 140 (216)
T KOG3367|consen 137 TGRT 140 (216)
T ss_pred ccch
Confidence 9975
No 77
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.015 Score=52.26 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCC-----CCEEEEEe--EeCCCC-------ceeEEEeeeecCCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD-----APLAIVDK--RRHGHN-------VAEVMNLIGDVKGK 310 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~-----~~~~~~~K--~R~~~~-------~~e~~~lvGDVkGk 310 (324)
-++..|.++.-..+|+++++=-.+|+..|+.+|++++. +|+..++- .||.-. ......+..|+.||
T Consensus 18 Ria~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k 97 (179)
T COG2065 18 RIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITGK 97 (179)
T ss_pred HHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCcccccCC
Confidence 35555555444578999999999999999999988752 34444332 454211 11223456689999
Q ss_pred eEEEEecccccCCC
Q 020556 311 VAVMVDDMIDTAGW 324 (324)
Q Consensus 311 ~vIIVDDIIdTGGs 324 (324)
+||+|||..-||.+
T Consensus 98 ~VILVDDVLytGRT 111 (179)
T COG2065 98 RVILVDDVLYTGRT 111 (179)
T ss_pred EEEEEeeecccCcc
Confidence 99999999999975
No 78
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.16 E-value=0.18 Score=50.78 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=88.4
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCc-------eEEEecc-CcCCCcEEEEecCCCCchhhHHHHHHHHH
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGE-------IYVQLQE-SVRGCDVYLVQPTCPPANENLMELLIMID 170 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE-------~~V~i~e-sVrG~dV~IVqS~~~p~nd~LmELLl~id 170 (324)
+.+-.-.+....|+.+|+.||.++.-+.-.|..+++ +...+.. +|.|++|+||..+...- . -|.-.++
T Consensus 210 VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG-~---Tl~~aa~ 285 (382)
T PRK06827 210 MVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASG-G---SMIDAAK 285 (382)
T ss_pred EEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcH-H---HHHHHHH
Confidence 444445567789999999999998877655543322 2333434 89999999998775432 2 2567789
Q ss_pred HHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHH---HhCCCeEEEEcCCc--hhcccccCCccceeeehHH
Q 020556 171 ACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLIT---EAGADRVLACDLHS--GQSMGYFDIPVDHVYCQPV 245 (324)
Q Consensus 171 Alr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~---~~G~d~VitvDlHs--~~~~~fF~ipv~nL~~~~~ 245 (324)
.||+.||++|.++...--++ ..+.++.+ ..++++|++-|-+- ..... .-.+..++..++
T Consensus 286 ~Lk~~GA~~V~~~~tH~vf~--------------~a~~~l~~~~~~g~i~~iv~TdTi~~~~~~~~--~~~~~~isva~l 349 (382)
T PRK06827 286 ELKSRGAKKIIVAATFGFFT--------------NGLEKFDKAYEEGYFDRIIGTNLVYHPEELLS--KPWYIEVDMSKL 349 (382)
T ss_pred HHHHcCCCEEEEEEEeecCh--------------HHHHHHHhhcccCCCCEEEEeCCCcCchhhcc--cCCeEEEEcHHH
Confidence 99999999999876553222 12223332 34599999999652 11111 123567888999
Q ss_pred HHHHHHh
Q 020556 246 ILDYLAS 252 (324)
Q Consensus 246 l~~yl~~ 252 (324)
+++.|..
T Consensus 350 lA~~I~~ 356 (382)
T PRK06827 350 IARIIDA 356 (382)
T ss_pred HHHHHHH
Confidence 9999865
No 79
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=95.82 E-value=0.021 Score=58.79 Aligned_cols=78 Identities=27% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCCCCc-----------eeEEE---eeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGHNV-----------AEVMN---LIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~~~~-----------~e~~~---lvGDVkG 309 (324)
-+.+.|.+......+.||--||.|- ..|..+|+.+| .++.. +.|.|..... ...+. +.+.++|
T Consensus 279 ~~G~~La~~~~~~~D~VvpVP~s~~-~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~g 356 (474)
T PRK06388 279 RMGMRLAKESPVEADVVVPVPDSGR-SQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISG 356 (474)
T ss_pred HHHHHHHhhccCCCcEEEeeCCCcH-HHHHHHHHHhC-CCchhheEEecccCCcccCCchhhhhhceeEEeccccccccC
Confidence 3455555443223456777799985 55999999986 67643 4454432110 00111 2235799
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+++||||+|.||.|
T Consensus 357 k~VlLVDDsittGtT 371 (474)
T PRK06388 357 KRIVLVDDSIVRGNT 371 (474)
T ss_pred ceEEEEeCeECcHHH
Confidence 999999999999964
No 80
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=95.80 E-value=0.019 Score=59.46 Aligned_cols=65 Identities=28% Similarity=0.326 Sum_probs=42.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCC-CCc-----------ee-EEE-eeeecCCCeEEEEecccccC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG-HNV-----------AE-VMN-LIGDVKGKVAVMVDDMIDTA 322 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~-~~~-----------~e-~~~-lvGDVkGk~vIIVDDIIdTG 322 (324)
.+.||--||. +...|..+|+.++ .|+.. +-|+|.. ... +. .+. ...+++||+|+||||++.||
T Consensus 294 ~D~VvpVP~s-~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTG 371 (501)
T PRK09246 294 IDVVIPIPDT-SRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRG 371 (501)
T ss_pred CcEEEEeCcc-HHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEecccccc
Confidence 3567777887 4789999999997 67642 2233221 110 10 112 23469999999999999999
Q ss_pred CC
Q 020556 323 GW 324 (324)
Q Consensus 323 Gs 324 (324)
.|
T Consensus 372 aT 373 (501)
T PRK09246 372 TT 373 (501)
T ss_pred HH
Confidence 75
No 81
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=95.43 E-value=0.015 Score=60.32 Aligned_cols=79 Identities=28% Similarity=0.321 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCC-C-----C------ceeE-EE-eeeecC
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG-H-----N------VAEV-MN-LIGDVK 308 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~-~-----~------~~e~-~~-lvGDVk 308 (324)
..+.++|.+......|.||--||. +..-|..+|+.+| .|+.. +.|.|-. . + .+.. .. +...++
T Consensus 299 ~~~G~~La~~~~~~~DvVv~VP~s-g~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~ 376 (500)
T PRK07349 299 QRLGQQLAKESPVDADLVIGVPDS-GIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLA 376 (500)
T ss_pred HHHHHHHhhhcccCCcEEEEeccc-cHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccC
Confidence 457777765432223444445555 5677999999997 68753 3344321 0 0 0111 11 234579
Q ss_pred CCeEEEEecccccCCC
Q 020556 309 GKVAVMVDDMIDTAGW 324 (324)
Q Consensus 309 Gk~vIIVDDIIdTGGs 324 (324)
||+|+||||+|.||.|
T Consensus 377 gkrVlLVDDvIttGtT 392 (500)
T PRK07349 377 GKRIIIVDDSIVRGTT 392 (500)
T ss_pred CCEEEEEeceeCCcHH
Confidence 9999999999999975
No 82
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=95.20 E-value=0.045 Score=56.36 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeC-CCCc-----------ee-EEE-eeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRH-GHNV-----------AE-VMN-LIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~-~~~~-----------~e-~~~-lvGDVkG 309 (324)
-+.+.|.+......|.|+--||. +..-|..+|+.+| .|+.. +-|+|. +... ++ ... +...++|
T Consensus 271 ~~G~~La~~~~~~~D~vv~VP~s-~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~g 348 (471)
T PRK06781 271 NMGKRLAAEAPIEADVVTGVPDS-SISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEG 348 (471)
T ss_pred HHHHHHhhhCCCCCcEEEEcChh-HHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCC
Confidence 45566665432234566666774 4566999999997 67653 334332 1111 11 122 2345899
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+++||||+|.||.|
T Consensus 349 k~VlLVDDvittGtT 363 (471)
T PRK06781 349 KRVVMIDDSIVRGTT 363 (471)
T ss_pred ceEEEEeceeccchH
Confidence 999999999999975
No 83
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=94.80 E-value=0.045 Score=56.44 Aligned_cols=78 Identities=27% Similarity=0.306 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCCC-Cc-----------ee-EEE-eeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH-NV-----------AE-VMN-LIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~~-~~-----------~e-~~~-lvGDVkG 309 (324)
-+.+.|.+......+.||--||. +..-|..+|+.+| .|+.. +-|+|... +. +. ... +.+.++|
T Consensus 271 ~~G~~La~~~~~~~D~VvpVP~s-~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~g 348 (475)
T PRK07631 271 NLGKRLALEAPVEADVVTGVPDS-SISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEG 348 (475)
T ss_pred HHHHHHHhhCCCCCcEEEEechh-HHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCC
Confidence 45566655432233566666886 5569999999997 67643 33433211 10 00 112 2456899
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+++||||+|.||.|
T Consensus 349 k~VlLVDDsittGtT 363 (475)
T PRK07631 349 KRVVMVDDSIVRGTT 363 (475)
T ss_pred ceEEEEeeeeccHHH
Confidence 999999999999964
No 84
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=94.63 E-value=0.054 Score=56.02 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCCC------C------cee-EEE-eeeecC
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------N------VAE-VMN-LIGDVK 308 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~~------~------~~e-~~~-lvGDVk 308 (324)
..++++|.+......|.||-=||.+ ..-|..+|+.+| .|+.. +-|.|... + .+. ... +.+.++
T Consensus 272 ~~lg~~La~~~~~~~D~VvpVPnqa-~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~ 349 (484)
T PRK07272 272 KRMGKRLAQEFPHDADIVIGVPNSS-LSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVK 349 (484)
T ss_pred HHHHHHHHhhcCCCCCEEEEecHHH-HHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccC
Confidence 3566666654322235555556554 569999999997 67632 33433111 0 011 112 245799
Q ss_pred CCeEEEEecccccCCC
Q 020556 309 GKVAVMVDDMIDTAGW 324 (324)
Q Consensus 309 Gk~vIIVDDIIdTGGs 324 (324)
||+|+||||+|.||.|
T Consensus 350 gk~vllVDDvittG~T 365 (484)
T PRK07272 350 GKRVVMVDDSIVRGTT 365 (484)
T ss_pred CCEEEEEccccCchHH
Confidence 9999999999999964
No 85
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=94.33 E-value=0.017 Score=51.91 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=17.2
Q ss_pred ecCCCeEEEEecccccCCC
Q 020556 306 DVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 306 DVkGk~vIIVDDIIdTGGs 324 (324)
+++||+|+|||||++||.|
T Consensus 149 ~~~~~~vllvDDV~TTGaT 167 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGAT 167 (190)
T ss_pred CCCCCEEEEEeeeeccHHH
Confidence 4899999999999999975
No 86
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=94.18 E-value=0.071 Score=55.46 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCC------CC----c-eeEEE---eeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------HN----V-AEVMN---LIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~------~~----~-~e~~~---lvGDVkG 309 (324)
-+.+.|.+......+.|+--||.| ..-|..+|+.+| .|+.. +.|.|.. .. . ..-+. +...++|
T Consensus 290 ~~G~~La~~~~~~~D~VvpVP~sG-~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~g 367 (510)
T PRK07847 290 EIGRRLAREHPVEADLVIPVPESG-TPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRG 367 (510)
T ss_pred HHHHHHHhhCCCCCeEEEeccCch-HHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccCC
Confidence 455666654322234444459986 777999999997 67643 3343210 00 0 01111 1223799
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|++|||||+|.||.|
T Consensus 368 k~vllVDD~ittG~T 382 (510)
T PRK07847 368 KRLVVVDDSIVRGNT 382 (510)
T ss_pred CEEEEEecccCchHH
Confidence 999999999999964
No 87
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.17 Score=45.46 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=54.0
Q ss_pred hHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCc-ee----------EEEe-eeec-CC
Q 020556 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-AE----------VMNL-IGDV-KG 309 (324)
Q Consensus 243 ~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~-~e----------~~~l-vGDV-kG 309 (324)
..++++++++.. +.+-.+|++-++-+--.--.+|-.+| +.++-+.|.-.-.+. +. ..++ +|.+ -|
T Consensus 45 idlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG-~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g 122 (183)
T KOG1712|consen 45 IDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALG-AGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPG 122 (183)
T ss_pred HHHHHHHHHHHh-cCcceEEEeeeecceecCcHHHHHhC-CCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCC
Confidence 356677776642 34577899888887776677788887 688888776432221 11 1121 3444 57
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
-+|+||||++.||||
T Consensus 123 ~rvvvVDDllATGGT 137 (183)
T KOG1712|consen 123 QRVVVVDDLLATGGT 137 (183)
T ss_pred CeEEEEechhhcCcc
Confidence 899999999999997
No 88
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=93.32 E-value=3.3 Score=40.96 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=79.1
Q ss_pred CEEEEEC-CCCHHHHHHHHHHhCCceeceEEeecCCCc--eEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHh
Q 020556 98 RIKLFSG-TANPALSQEIACYMGVELGKINIKRFADGE--IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (324)
Q Consensus 98 ~~~Ifsg-ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE--~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ 174 (324)
++.|++- ......+..++ +|.+..-++=.+ +|+ ......++++|++|+||...... -. -|.-.++.|++
T Consensus 184 ~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R--~g~~~~~~~~~~dv~gr~vlIVDDIidT-G~---Tl~~aa~~L~~ 255 (326)
T PLN02297 184 NIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVR--EGDKRIVRIKEGNPAGRHVVIVDDLVQS-GG---TLIECQKVLAA 255 (326)
T ss_pred CcEEEecCccHHHHHHHHc--CCCCEEEEEeEE--CCCceEEEecccccCCCeEEEEecccCc-HH---HHHHHHHHHHH
Confidence 4445543 33333344433 366666555444 454 33345678999999999876532 12 24566799999
Q ss_pred cCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHH-----hCCCeEEEEcCCchh-c-ccccCCccceeeehHHHH
Q 020556 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITE-----AGADRVLACDLHSGQ-S-MGYFDIPVDHVYCQPVIL 247 (324)
Q Consensus 175 agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~-----~G~d~VitvDlHs~~-~-~~fF~ipv~nL~~~~~l~ 247 (324)
.||++|.++.-.-= ++...+-++.+. .|+++|++-|-+-.. . ..-. -++..++..++++
T Consensus 256 ~Ga~~V~~~~THgl-------------fs~~a~~~l~~~~~~~~~~i~~iv~TdTip~~~~~~~~~-~k~~~isva~llA 321 (326)
T PLN02297 256 HGAAKVSAYVTHGV-------------FPNESWERFTHDNGGPEAGFAYFWITDSCPQTVKAVRGK-APFEVLSLAGSIA 321 (326)
T ss_pred CCCcEEEEEEECcc-------------cChhHHHHHHhcccccccCcCEEEEcCCccCChhhcccC-CCcEEEEcHHHHH
Confidence 99999998765532 233345555553 689999999987211 1 0001 1355677788888
Q ss_pred HHH
Q 020556 248 DYL 250 (324)
Q Consensus 248 ~yl 250 (324)
+.|
T Consensus 322 e~i 324 (326)
T PLN02297 322 DAL 324 (326)
T ss_pred HHh
Confidence 765
No 89
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=92.20 E-value=1.8 Score=38.83 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=56.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCce--eceEEeecCCCc----eEEE--eccCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 98 RIKLFSGTANPALSQEIACYMGVEL--GKINIKRFADGE----IYVQ--LQESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l--~~i~~~rFpDGE----~~V~--i~esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
.+.|=..+....+|..+|+.||+++ .-+...++.+++ +... ...+++|++|+||...... -.. |.-.+
T Consensus 42 ~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidT-G~T---l~~~~ 117 (181)
T PRK09162 42 PLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDE-GHT---LAAIR 117 (181)
T ss_pred eEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCc-HHH---HHHHH
Confidence 3444446778899999999999874 455666666543 2222 2357899999999765432 122 34567
Q ss_pred HHHHhcCCCeEEEEE
Q 020556 170 DACRRASAKNITAVI 184 (324)
Q Consensus 170 dAlr~agAkrItlVi 184 (324)
+.|++.||++|.+..
T Consensus 118 ~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 118 DRCLEMGAAEVYSAV 132 (181)
T ss_pred HHHHhCCCCEEEEEE
Confidence 778999999998765
No 90
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=91.67 E-value=0.63 Score=43.47 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=35.1
Q ss_pred ehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEE
Q 020556 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIV 288 (324)
Q Consensus 242 ~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~ 288 (324)
+-..|++.|.+.. ..++++|.+=--||+.-|..+|+.|| +++.++
T Consensus 10 AGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lg-a~ldvl 54 (220)
T COG1926 10 AGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALG-APLDVL 54 (220)
T ss_pred HHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhC-CCeeEE
Confidence 4466777777642 25788999999999999999999997 676544
No 91
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=91.27 E-value=0.7 Score=42.19 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=62.7
Q ss_pred EEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCC
Q 020556 137 VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA 216 (324)
Q Consensus 137 V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~ 216 (324)
+.+-.+|.|++++||..+.... . -+.-.++.||+.||++|.++.-+-=++ ++. .+.|+...+
T Consensus 75 ~~vVGDV~gk~~IIvDDiIdtg-~---Tl~~aA~~Lk~~GA~~V~~~aTHgvfs--------~~A------~~~l~~s~I 136 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIIDTG-G---TLIKAAELLKERGAKKVYACATHGVFS--------GDA------PERLEESPI 136 (184)
T ss_dssp EEEES--TTSEEEEEEEEESST-H---HHHHHHHHHHHTTESEEEEEEEEE-----------TTH------HHHHHHSSE
T ss_pred eEEEEEccCCeEeeecccccch-H---HHHHHHHHHHHcCCCEEEEEEeCcccC--------chH------HHHHhhcCC
Confidence 4556899999999998765321 2 356778899999999999877654322 221 255777889
Q ss_pred CeEEEEcCCchhcccccCCccceeeehHHHHHHHHh
Q 020556 217 DRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (324)
Q Consensus 217 d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~ 252 (324)
|+|++-|-.-...+..-.-.++.|+..++|++.|..
T Consensus 137 d~vvvTnTIp~~~~~~~~~Ki~vldis~llaeaI~r 172 (184)
T PF14572_consen 137 DEVVVTNTIPQEEQKLQCPKIKVLDISPLLAEAIRR 172 (184)
T ss_dssp SEEEEETTS--HHHHHH-TTEEEE--HHHHHHHHHH
T ss_pred eEEEEeccccCchhhhcCCCEeEeehHHHHHHHHHH
Confidence 999999965332222112356778888999998864
No 92
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=91.00 E-value=4 Score=36.71 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=57.8
Q ss_pred EEEEECCCCHHHHHHHHHHhCCc--eeceEEeecC-----CCceEEEe--ccCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 99 IKLFSGTANPALSQEIACYMGVE--LGKINIKRFA-----DGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~--l~~i~~~rFp-----DGE~~V~i--~esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
+.|=-...+-.+|..+++.|+.+ +.-+...+|- +|++.+.. ..+++|++|+||...... -..| ..+.
T Consensus 37 vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDT-G~TL---~~l~ 112 (178)
T PRK15423 37 VLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDS-GNTL---SKVR 112 (178)
T ss_pred EEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCc-hHHH---HHHH
Confidence 33333577889999999999986 5588999996 35555553 357999999999876432 2323 2556
Q ss_pred HHHHhcCCCeEEEEE
Q 020556 170 DACRRASAKNITAVI 184 (324)
Q Consensus 170 dAlr~agAkrItlVi 184 (324)
+.++..+++++....
T Consensus 113 ~~l~~~~~~~v~~av 127 (178)
T PRK15423 113 EILSLREPKSLAICT 127 (178)
T ss_pred HHHHhCCCCEEEEEE
Confidence 678888888885443
No 93
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=90.87 E-value=1.1 Score=37.71 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=37.2
Q ss_pred EEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEeccc
Q 020556 262 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMI 319 (324)
Q Consensus 262 VVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDII 319 (324)
+|.+-.+....|+.+|+.|| .++.-++-+|-.+++.. ..+.++++|++|+||=++.
T Consensus 2 ~I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE~~-v~i~~~v~g~dv~iiqs~~ 57 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGETY-VRIPESVRGKDVFIIQSTS 57 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS-EE-EEESS--TTSEEEEE---S
T ss_pred EEEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCCEE-EEecccccCCceEEEEecC
Confidence 56667788899999999997 68888877776665433 3577799999999996654
No 94
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=90.20 E-value=4 Score=36.09 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=56.5
Q ss_pred CEEEE-ECCCCHHHHHHHHHHhCCc--eeceEEeecCCC-----ceEE--EeccCcCCCcEEEEecCCCCchhhHHHHHH
Q 020556 98 RIKLF-SGTANPALSQEIACYMGVE--LGKINIKRFADG-----EIYV--QLQESVRGCDVYLVQPTCPPANENLMELLI 167 (324)
Q Consensus 98 ~~~If-sgss~~~LA~~Ia~~Lg~~--l~~i~~~rFpDG-----E~~V--~i~esVrG~dV~IVqS~~~p~nd~LmELLl 167 (324)
+..|+ ...+.-.+|..+++.|+++ ++.+.+..|-|+ +..+ .+..++.|++|+||...... -.. |.-
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~T-G~T---l~~ 102 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDT-GLT---LQY 102 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCc-HHH---HHH
Confidence 34444 3567889999999999965 556777766544 2322 24568899999999765432 233 345
Q ss_pred HHHHHHhcCCCeEEEEE
Q 020556 168 MIDACRRASAKNITAVI 184 (324)
Q Consensus 168 ~idAlr~agAkrItlVi 184 (324)
.+++|+..|+++|.++.
T Consensus 103 ~~~~l~~~g~~~i~~~~ 119 (166)
T TIGR01203 103 LLDLLKARKPKSLKIVT 119 (166)
T ss_pred HHHHHHHCCCCEEEEEE
Confidence 56778888998887655
No 95
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=89.25 E-value=2.1 Score=43.80 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=51.0
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEe-ecC-------C-------CceEEEe-ccCcCCCcEEEEecCCCCchhh
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIK-RFA-------D-------GEIYVQL-QESVRGCDVYLVQPTCPPANEN 161 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~-rFp-------D-------GE~~V~i-~esVrG~dV~IVqS~~~p~nd~ 161 (324)
.+.|..-.+...+|..+|+.||+++...-++ ++. + +...+.. .+.+.||+|+||...-.. -..
T Consensus 277 d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitT-G~T 355 (445)
T PRK08525 277 DFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVR-GTT 355 (445)
T ss_pred CeEEECCchHHHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCc-HHH
Confidence 3444333445689999999999986422222 111 1 1122222 245899999999754321 122
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEE
Q 020556 162 LMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 162 LmELLl~idAlr~agAkrItlVi 184 (324)
+ .-+++.||++||++|.+.+
T Consensus 356 l---~~a~~~Lr~aGA~~V~v~~ 375 (445)
T PRK08525 356 S---KKIVSLLRAAGAKEIHLRI 375 (445)
T ss_pred H---HHHHHHHHhcCCCEEEEEE
Confidence 3 3467899999999999876
No 96
>PLN02440 amidophosphoribosyltransferase
Probab=87.34 E-value=4.3 Score=42.02 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=73.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceece-EEeecC------------CCceEEEec---cCcCCCcEEEEecCCCCchh
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKI-NIKRFA------------DGEIYVQLQ---ESVRGCDVYLVQPTCPPANE 160 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i-~~~rFp------------DGE~~V~i~---esVrG~dV~IVqS~~~p~nd 160 (324)
..+.|-.-.+...+|..+++.+|+++... ...++. +++...++. ..++||+|+||...... -.
T Consensus 276 ~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiitt-Gt 354 (479)
T PLN02440 276 CDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVR-GT 354 (479)
T ss_pred CCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCc-HH
Confidence 34544444556789999999999987631 112332 233444442 45899999998654321 12
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEEc--------CCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCC
Q 020556 161 NLMELLIMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH 225 (324)
Q Consensus 161 ~LmELLl~idAlr~agAkrItlViP--------YlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlH 225 (324)
. |--+++.||++||++|.+++- |++..=.||.+.-+--.+...|+ +..|+|.+..+-+.
T Consensus 355 T---l~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~---~~~~~dsl~~l~~~ 421 (479)
T PLN02440 355 T---SSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIR---KFIGCDSLAFLPLE 421 (479)
T ss_pred H---HHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHH---HHhCCCEEEEecHH
Confidence 2 344678899999999886653 44445455554333334444444 44578888777554
No 97
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=87.03 E-value=7.6 Score=35.52 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=61.6
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC-CceeceEEeecCC-Cc---eEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHH
Q 020556 98 RIKLFS-GTANPALSQEIACYMG-VELGKINIKRFAD-GE---IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg-~~l~~i~~~rFpD-GE---~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idA 171 (324)
++.+++ ..+...+++.+.+.|. .+.+.+...+... +| .+.++++++.|++|+|+..+-..- . -+..+++.
T Consensus 69 ~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG-~---Tl~~ai~~ 144 (207)
T TIGR01091 69 KIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATG-G---TMIAALDL 144 (207)
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccch-H---HHHHHHHH
Confidence 455544 5788899999999998 5777766655422 23 477888899999999998765321 2 24667888
Q ss_pred HHhcCCCeEEEEEc
Q 020556 172 CRRASAKNITAVIP 185 (324)
Q Consensus 172 lr~agAkrItlViP 185 (324)
+++.|+++|.++..
T Consensus 145 L~~~G~~~I~v~~l 158 (207)
T TIGR01091 145 LKKRGAKKIKVLSI 158 (207)
T ss_pred HHHcCCCEEEEEEE
Confidence 99999999987766
No 98
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=86.59 E-value=12 Score=33.76 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHhCC---ce--eceEEeecCC-----CceEEEe---ccCcCCCcEEEEecCCCCchhhHHHHHHHHH
Q 020556 104 GTANPALSQEIACYMGV---EL--GKINIKRFAD-----GEIYVQL---QESVRGCDVYLVQPTCPPANENLMELLIMID 170 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~---~l--~~i~~~rFpD-----GE~~V~i---~esVrG~dV~IVqS~~~p~nd~LmELLl~id 170 (324)
...+-.+|..++++|+. ++ .-+..+++.+ |+..+.. ..+++|++|+||..... .=--|..+++
T Consensus 43 ~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIid----TG~Tl~~~~~ 118 (189)
T PLN02238 43 ATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVD----TGNTLSALVA 118 (189)
T ss_pred ccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccc----hHHHHHHHHH
Confidence 56677899999999997 33 4566777755 4555544 35789999999976542 2223455668
Q ss_pred HHHhcCCCeEEEEE
Q 020556 171 ACRRASAKNITAVI 184 (324)
Q Consensus 171 Alr~agAkrItlVi 184 (324)
.+++.|+++|.+..
T Consensus 119 ~l~~~g~~~v~~av 132 (189)
T PLN02238 119 HLEAKGAASVSVCA 132 (189)
T ss_pred HHHhCCCCEEEEEE
Confidence 89999999987654
No 99
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=86.53 E-value=8.9 Score=35.10 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=61.5
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC-CceeceEEeecCC-Cc---eEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHH
Q 020556 98 RIKLFS-GTANPALSQEIACYMG-VELGKINIKRFAD-GE---IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg-~~l~~i~~~rFpD-GE---~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idA 171 (324)
++.+++ ..+...+++.+++.|+ .+.+.+...+... ++ .+.++++++.|++|+|+..+-..- . -+...++.
T Consensus 71 ~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG-~---Tl~~ai~~ 146 (209)
T PRK00129 71 KLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATG-G---SAIAAIDL 146 (209)
T ss_pred eEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccch-H---HHHHHHHH
Confidence 344444 5788899999999998 5788877766432 12 367788899999999987664321 2 24567788
Q ss_pred HHhcCCCeEEEEEc
Q 020556 172 CRRASAKNITAVIP 185 (324)
Q Consensus 172 lr~agAkrItlViP 185 (324)
|++.|+++|.++.-
T Consensus 147 L~~~G~~~I~~~~l 160 (209)
T PRK00129 147 LKKRGAKNIKVLCL 160 (209)
T ss_pred HHHcCCCEEEEEEE
Confidence 88999999987664
No 100
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=86.43 E-value=0.3 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.3
Q ss_pred EeeeecCC-CeEEEEecccccCCC
Q 020556 302 NLIGDVKG-KVAVMVDDMIDTAGW 324 (324)
Q Consensus 302 ~lvGDVkG-k~vIIVDDIIdTGGs 324 (324)
.+.+.++. |+|+|||||+.||.|
T Consensus 176 ~~~~~~~~~~~vlLvDDV~TTGaT 199 (225)
T COG1040 176 RLKKGIEEPKNVLLVDDVYTTGAT 199 (225)
T ss_pred ecCCCCCCCCeEEEEecccccHHH
Confidence 45555655 999999999999964
No 101
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=85.84 E-value=2.6 Score=43.77 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=72.1
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEe------ec--CCC---ceEE--E---eccCcCCCcEEEEecCCCCchhh
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIK------RF--ADG---EIYV--Q---LQESVRGCDVYLVQPTCPPANEN 161 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~------rF--pDG---E~~V--~---i~esVrG~dV~IVqS~~~p~nd~ 161 (324)
.+.|---++...+|..+|+.+|+++..--++ +| |.. +..+ + +.+.++|++|+||...-.. -..
T Consensus 287 D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvitt-G~T 365 (484)
T PRK07272 287 DIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVR-GTT 365 (484)
T ss_pred CEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCc-hHH
Confidence 3444333556689999999999987432222 33 221 1112 1 2356889999998653221 122
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEc--------CCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCC
Q 020556 162 LMELLIMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH 225 (324)
Q Consensus 162 LmELLl~idAlr~agAkrItlViP--------YlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlH 225 (324)
+ --++.+||++||+.|.+.+- ||+..+++|...-..-.+ +-++=+..|+|.+..+.+.
T Consensus 366 ~---~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~---~~ei~~~~~~dsl~~~~~~ 431 (484)
T PRK07272 366 S---RRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHS---VEEICDIIGADSLTYLSVD 431 (484)
T ss_pred H---HHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCC---HHHHHHHhCCCEEEEecHH
Confidence 2 34678899999999998886 777777766421111122 3334445577777776654
No 102
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=85.49 E-value=6.2 Score=35.01 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEE
Q 020556 104 GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 183 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlV 183 (324)
....-.+|..+|..||++..-+.-.+...|+..... ..++|+.|+||...-.. -. -+.-.++.++++|| ++..+
T Consensus 64 ~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~~~~~~-g~~~g~~VlIVDDvi~T-G~---T~~~~~~~l~~~Ga-~v~~~ 137 (170)
T PRK13811 64 AVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLII-GDVKGKRVLLVEDVTTS-GG---SALYGIEQLRAAGA-VVDDV 137 (170)
T ss_pred CcCcHHHHHHHHHHHCCCEEEEecCCCCCCCcceEE-cccCCCEEEEEEecccc-cH---HHHHHHHHHHHCCC-eEEEE
Confidence 345679999999999999877666666677655444 46899999998754321 12 24566788999998 45545
Q ss_pred EcCC
Q 020556 184 IPYF 187 (324)
Q Consensus 184 iPYl 187 (324)
+-.+
T Consensus 138 ~~~v 141 (170)
T PRK13811 138 VTVV 141 (170)
T ss_pred EEEE
Confidence 5444
No 103
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=84.64 E-value=6.5 Score=40.23 Aligned_cols=117 Identities=24% Similarity=0.319 Sum_probs=68.5
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEee------c--CCCc-----eEEEe---ccCcCCCcEEEEecCCCCchhh
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKR------F--ADGE-----IYVQL---QESVRGCDVYLVQPTCPPANEN 161 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~r------F--pDGE-----~~V~i---~esVrG~dV~IVqS~~~p~nd~ 161 (324)
.+.+-.-.+....|..+|+.+|++....-+++ | |+.+ ++.++ ...++||.|+||...-.. -.
T Consensus 275 D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~itt-G~- 352 (442)
T TIGR01134 275 DVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVR-GT- 352 (442)
T ss_pred EEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccc-cH-
Confidence 34333334556899999999999876532322 2 2221 11122 245789999998654221 12
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEc--------CCCc---ccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 162 LMELLIMIDACRRASAKNITAVIP--------YFGY---ARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 162 LmELLl~idAlr~agAkrItlViP--------YlpY---aRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
-+--++.+|+++||+.|.+++- ||+- .|++..... .+ +-++=+..|+|.+..+.+
T Consensus 353 --T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~---~~---~~~i~~~~~~~~l~~~~~ 418 (442)
T TIGR01134 353 --TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG---RT---VEEIAKEIGADSLAYLSL 418 (442)
T ss_pred --HHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcC---CC---HHHHHHHhCCCEEEEecH
Confidence 2345678999999999998886 7776 555443211 12 333334456676666543
No 104
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=84.35 E-value=2 Score=37.80 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCC-------CCchHH
Q 020556 200 ESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPD-------VGGVAR 272 (324)
Q Consensus 200 episak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD-------~Ga~kR 272 (324)
.-.+...-.++|+.+|+|.++.+| |+..+.++++...+-++|.++. .-.-+||+.| .|.++.
T Consensus 60 ~l~s~~ek~~~l~~~Gvd~~~~~~---------F~~~~~~ls~~~Fi~~iL~~~l--~~~~ivvG~DfrFG~~~~G~~~~ 128 (157)
T PF06574_consen 60 LLTSLEEKLELLESLGVDYVIVIP---------FTEEFANLSPEDFIEKILKEKL--NVKHIVVGEDFRFGKNRSGDVEL 128 (157)
T ss_dssp BSS-HHHHHHHHHHTTESEEEEE----------CCCHHCCS-HHHHHHHHCCCHC--TEEEEEEETT-EESGGGEEEHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEEec---------chHHHHcCCHHHHHHHHHHhcC--CccEEEEccCccCCCCCCCCHHH
Confidence 356777888999999999999998 6555667887766666666331 2346899999 788888
Q ss_pred HHHHHHHcCCCCEEEEEeEeC
Q 020556 273 ARAFAKKLSDAPLAIVDKRRH 293 (324)
Q Consensus 273 A~~~A~~L~~~~~~~~~K~R~ 293 (324)
-+++++.+| ..+.+++....
T Consensus 129 L~~~~~~~g-~~v~~v~~~~~ 148 (157)
T PF06574_consen 129 LKELGKEYG-FEVEVVPPVKI 148 (157)
T ss_dssp HHHCTTTT--SEEEEE---EE
T ss_pred HHHhcccCc-eEEEEECCEEc
Confidence 888877775 56666665543
No 105
>PLN02501 digalactosyldiacylglycerol synthase
Probab=84.00 E-value=13 Score=40.87 Aligned_cols=171 Identities=13% Similarity=0.165 Sum_probs=92.5
Q ss_pred EEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCC--chhhHHHHHHHHHHHHhcCCC
Q 020556 101 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP--ANENLMELLIMIDACRRASAK 178 (324)
Q Consensus 101 Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p--~nd~LmELLl~idAlr~agAk 178 (324)
+-.++++-+|--+||+.|.-.-...+-+-..|...+ .+.+ .+++|.||.+.+-| .-..+.-|+-.+.-++. |-.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~-~~~ 356 (794)
T PLN02501 281 LESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKH-ELSD--GKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKS-AKQ 356 (794)
T ss_pred cccccccccchhhhhhhhhccCccccCCcccCcccc-cccc--CCCeEEEEEcccCcccccccccHHHHHHHhccc-CCc
Confidence 334556668888888877543222221111222111 1222 25799999876544 22334445555554443 568
Q ss_pred eEEEEEcCCCcccccccccCCcchh-----HHHHHHHH-HHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHh
Q 020556 179 NITAVIPYFGYARADRKTQGRESIA-----AKLVANLI-TEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (324)
Q Consensus 179 rItlViPYlpYaRQDR~~~~gepis-----ak~vA~lL-~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~ 252 (324)
+||+|||+|+-+=|....-..-.+. -.+|-+-| +.+|+..-.-+.. ..|-|.....-|.+..-+.++|.+
T Consensus 357 ~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~~i~f----Ypg~~~~~~~SI~p~gdI~~~L~~ 432 (794)
T PLN02501 357 NVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKADFKISF----YPGKFSKERRSIIPAGDTSQFIPS 432 (794)
T ss_pred eEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCCCceEEe----ecchhccCCccccchHHHHHHhhc
Confidence 9999999999654433322121222 34566667 6678763222221 112344344556666777777775
Q ss_pred cCCCCCCeEEEeCCCCchHH-HHHHHHHcC
Q 020556 253 KTVSSNDLVVVSPDVGGVAR-ARAFAKKLS 281 (324)
Q Consensus 253 ~~~~~~~~vVVsPD~Ga~kR-A~~~A~~L~ 281 (324)
. +.+-..+..|..=+... |..+|++++
T Consensus 433 f--~PDVVHLatP~~LGw~~~Glr~ArKl~ 460 (794)
T PLN02501 433 K--DADIAILEEPEHLNWYHHGKRWTDKFN 460 (794)
T ss_pred c--CCCEEEECCchhhccHHHHHHHHHHcC
Confidence 3 34455566777666553 566677775
No 106
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=83.97 E-value=16 Score=32.19 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEee-cC-----------CCceEEEec--cCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 104 GTANPALSQEIACYMGVELGKINIKR-FA-----------DGEIYVQLQ--ESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~r-Fp-----------DGE~~V~i~--esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
..+.-.+|..+|..||+++.-+.-.+ ++ .|+-.+.+. ..++|++|+||......- . -+.-++
T Consensus 59 ~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG-~---Tl~~~~ 134 (175)
T PRK02304 59 EARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATG-G---TLEAAI 134 (175)
T ss_pred ccchHHHHHHHHHHhCCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCcccc-H---HHHHHH
Confidence 45667999999999999976432221 11 133344443 337899999998765321 2 245667
Q ss_pred HHHHhcCCCeE
Q 020556 170 DACRRASAKNI 180 (324)
Q Consensus 170 dAlr~agAkrI 180 (324)
+.++++|++.+
T Consensus 135 ~~l~~~Ga~~v 145 (175)
T PRK02304 135 KLLERLGAEVV 145 (175)
T ss_pred HHHHHcCCEEE
Confidence 88889999755
No 107
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.18 E-value=5.7 Score=39.93 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
..|-.+|..||++...+. +..|.--+-+.++-....| +.+|... .+ .|.-.++-.++++++...+++++|+.-
T Consensus 279 laAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~g--v~~idDs-~a--tN~~a~~~al~~l~~~~~~~iilI~Gg 353 (448)
T PRK03803 279 LAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAG--VDYYNDS-KG--TNVGATVAAIEGLGAHIQGKLVLIAGG 353 (448)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCC--eEEEEcC-Cc--CCHHHHHHHHHhhhhcCCCCEEEEECC
Confidence 567777888898876555 6677655555555433333 4334322 22 233334444555544322578888854
Q ss_pred CCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccC--CccceeeehHHHHHHHHhcCCCCCCeEEEe
Q 020556 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASKTVSSNDLVVVS 264 (324)
Q Consensus 187 lpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~--ipv~nL~~~~~l~~yl~~~~~~~~~~vVVs 264 (324)
+. .|.-++ + +.+++... ++.|+++..+...+...+. .++..........+++.+.. ...+.|++|
T Consensus 354 ~~---k~~d~~---~-----l~~~l~~~-~~~vil~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~a~~~a-~~gdvVL~S 420 (448)
T PRK03803 354 DG---KGADFS---P-----LREPVAKY-VRAVVLIGRDADKIAAALGGAVPLVRVATLAEAVAKAAELA-QAGDIVLLS 420 (448)
T ss_pred CC---CCCCHH---H-----HHHHHHhh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEEeC
Confidence 32 122221 1 44555443 6889998877665554332 23322223444555554432 346789999
Q ss_pred CCCCchHHHHHHHH
Q 020556 265 PDVGGVARARAFAK 278 (324)
Q Consensus 265 PD~Ga~kRA~~~A~ 278 (324)
|-.++...-+.|.+
T Consensus 421 Pa~aSfd~f~~~~~ 434 (448)
T PRK03803 421 PACASLDMFKNFEA 434 (448)
T ss_pred chhhcccccCCHHH
Confidence 99999877766654
No 108
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=82.75 E-value=19 Score=32.44 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=51.2
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccC-cCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQES-VRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~es-VrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
.+.+=...+.-.+|..+|..|+++..-. .+. .|+..+..... .+|++|+||...-.. -. -|.-+++.++++|
T Consensus 60 d~Ivgi~~gGi~~A~~la~~L~~~~i~~--~k~-~~~~~~~~~~~l~~G~~VLIVDDIi~T-G~---Tl~~a~~~l~~~G 132 (187)
T TIGR01367 60 DFIVGPAMGGVILGYEVARQLSVRSIFA--ERE-GGGMKLRRGFAVKPGEKFVAVEDVVTT-GG---SLLEAIRAIEGQG 132 (187)
T ss_pred CEEEEEccCcHHHHHHHHHHhCCCeEEE--EEe-CCcEEEeecccCCCCCEEEEEEeeecc-hH---HHHHHHHHHHHcC
Confidence 4444334678899999999999986433 333 37766654433 579999999765432 12 2455667789999
Q ss_pred CCeEE
Q 020556 177 AKNIT 181 (324)
Q Consensus 177 AkrIt 181 (324)
++.+.
T Consensus 133 a~vv~ 137 (187)
T TIGR01367 133 GQVVG 137 (187)
T ss_pred CeEEE
Confidence 98663
No 109
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=82.61 E-value=7.6 Score=40.13 Aligned_cols=123 Identities=21% Similarity=0.250 Sum_probs=68.8
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEE-eec-------CCCc-----eEEEe---ccCcCCCcEEEEecCCCCchhh
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINI-KRF-------ADGE-----IYVQL---QESVRGCDVYLVQPTCPPANEN 161 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~-~rF-------pDGE-----~~V~i---~esVrG~dV~IVqS~~~p~nd~ 161 (324)
.+.+-.-.+...+|..+|+.||+++...-+ .++ |+.+ ..+++ ...++||+|+||...-.. -..
T Consensus 290 D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItT-GtT 368 (469)
T PRK05793 290 DIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVR-GTT 368 (469)
T ss_pred CEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCc-hHH
Confidence 344433445578999999999999864211 121 2211 12222 256789999998654221 122
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEE--cCC---CcccccccccCCcchhHHH-HHHHHHHhCCCeEEEEcCC
Q 020556 162 LMELLIMIDACRRASAKNITAVI--PYF---GYARADRKTQGRESIAAKL-VANLITEAGADRVLACDLH 225 (324)
Q Consensus 162 LmELLl~idAlr~agAkrItlVi--PYl---pYaRQDR~~~~gepisak~-vA~lL~~~G~d~VitvDlH 225 (324)
+ .-++.+||++||++|.+.+ |=+ +|..-|.... .|-|+++. +-++=+..|+|.+.-+.+.
T Consensus 369 l---~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~-~elia~~~~~~ei~~~~g~dsl~~ls~~ 434 (469)
T PRK05793 369 S---KRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYR-KELIGANMSVEEIREMIGADSLGYLSIE 434 (469)
T ss_pred H---HHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCCh-hhEEEcCCCHHHHHHHhCCCeEeccCHH
Confidence 2 3478899999999999877 322 2233332211 23333222 2233445677777766554
No 110
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=82.51 E-value=3.6 Score=37.65 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=51.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCC-ceeE--EEeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-VAEV--MNLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~-~~e~--~~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
++.++|+==-+|....+.+-+.+.++++..+.=+|+..+ ..+. ..+-.++++++|||+|-|+.||||
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s 136 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGS 136 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhh
Confidence 378888888888899999998888778888877787543 2222 245557899999999999999985
No 111
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=82.45 E-value=8.5 Score=34.94 Aligned_cols=107 Identities=23% Similarity=0.416 Sum_probs=70.2
Q ss_pred HHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE
Q 020556 208 ANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI 287 (324)
Q Consensus 208 A~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~ 287 (324)
.+.|...|+..|+ +|+-+- + +|.++-++.+.+.+|+.+.....-..+|||- ...+|+..+++.|+ .++.+
T Consensus 20 ~~~L~~~Gikgvi-~DlDNT--L----v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~-v~fi~ 89 (175)
T COG2179 20 PDILKAHGIKGVI-LDLDNT--L----VPWDNPDATPELRAWLAELKEAGIKVVVVSN--NKESRVARAAEKLG-VPFIY 89 (175)
T ss_pred HHHHHHcCCcEEE-EeccCc--e----ecccCCCCCHHHHHHHHHHHhcCCEEEEEeC--CCHHHHHhhhhhcC-Cceee
Confidence 3567778876665 454331 1 7888889999999999764222234566665 77899999999996 77776
Q ss_pred EEeEeC-------------CCCceeE-----E-E-eeeecCCCeEEEEecccccCCC
Q 020556 288 VDKRRH-------------GHNVAEV-----M-N-LIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 288 ~~K~R~-------------~~~~~e~-----~-~-lvGDVkGk~vIIVDDIIdTGGs 324 (324)
--|+=. ..+.+-+ + . +-|.-.|-++|+|.=++++.++
T Consensus 90 ~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~ 146 (175)
T COG2179 90 RAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGW 146 (175)
T ss_pred cccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccch
Confidence 544311 1111111 1 1 2345778899999999888763
No 112
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=81.44 E-value=6.9 Score=40.21 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=52.0
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecC---------CCceEEEe-----ccCcCCCcEEEEecCCCCchhhHH
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFA---------DGEIYVQL-----QESVRGCDVYLVQPTCPPANENLM 163 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFp---------DGE~~V~i-----~esVrG~dV~IVqS~~~p~nd~Lm 163 (324)
.+.+-.-.+...+|..+|+.+|++....-+++.. ..+..++. ...++||.|+||...-.. -.
T Consensus 273 D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~Itt--Gt-- 348 (442)
T PRK08341 273 DVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVR--GT-- 348 (442)
T ss_pred ceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeecc--HH--
Confidence 4444334445589999999999998763333322 12222222 355789999988643211 11
Q ss_pred HHHHHHHHHHhcCCCeEEEEE
Q 020556 164 ELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 164 ELLl~idAlr~agAkrItlVi 184 (324)
-|--++++||++||++|.+.+
T Consensus 349 Tl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 349 TMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred HHHHHHHHHHhcCCcEEEEEE
Confidence 234467899999999998877
No 113
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=81.20 E-value=19 Score=33.46 Aligned_cols=83 Identities=12% Similarity=0.273 Sum_probs=57.7
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC---C--ceeceEEeecCCC-----ceEEE--eccCcCCCcEEEEecCCCCchhhHHH
Q 020556 98 RIKLFS-GTANPALSQEIACYMG---V--ELGKINIKRFADG-----EIYVQ--LQESVRGCDVYLVQPTCPPANENLME 164 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~Lg---~--~l~~i~~~rFpDG-----E~~V~--i~esVrG~dV~IVqS~~~p~nd~LmE 164 (324)
++.|++ .+..-.+|..|+++|+ + ++..+.+..|-|| ++.+. +..+++|++|+||...-. .=.-
T Consensus 58 ~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvD----TG~T 133 (211)
T PTZ00271 58 PLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVD----SAIT 133 (211)
T ss_pred CeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccC----CHHH
Confidence 444443 5788899999999996 3 4778888888654 34442 346899999999976532 2223
Q ss_pred HHHHHHHHHhcCCCeEEEEE
Q 020556 165 LLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 165 LLl~idAlr~agAkrItlVi 184 (324)
|..+++.|++.++++|.+..
T Consensus 134 L~~v~~~l~~~~p~svk~av 153 (211)
T PTZ00271 134 LQYLMRFMLAKKPASLKTVV 153 (211)
T ss_pred HHHHHHHHHhcCCCEEEEEE
Confidence 56677788888888885433
No 114
>PLN02541 uracil phosphoribosyltransferase
Probab=81.17 E-value=3.8 Score=38.91 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=38.4
Q ss_pred eEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEE----EeeeecC-CCeEEEEecccccCCC
Q 020556 260 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVM----NLIGDVK-GKVAVMVDDMIDTAGW 324 (324)
Q Consensus 260 ~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~----~lvGDVk-Gk~vIIVDDIIdTGGs 324 (324)
.++|+==-.|....+.+.+.+.++....+.=+|+..+ .+.. .+-.++. ++.|||+|||+.||||
T Consensus 104 i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t-~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS 172 (244)
T PLN02541 104 VAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEET-LQPSMYLNKLPDKFPEGSRVLVVDPMLATGGT 172 (244)
T ss_pred EEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccc-cceEEeeccCchhcCCCCEEEEECcchhhhHH
Confidence 4455444455555555555555455555666676432 2221 2333565 6799999999999986
No 115
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=80.89 E-value=19 Score=36.87 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCceeceE--EeecC--CC--ceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc---CCCe
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFA--DG--EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA---SAKN 179 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFp--DG--E~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a---gAkr 179 (324)
-.|-.++..||+++..+. +.+|. .| |. +++. +.+..+.||...+. .+--++.-.++++++. ..++
T Consensus 297 laAia~a~~lGi~~~~i~~~l~~~~~~~gR~~~-~r~~--~~~~~~~iIDDsYa---hnP~s~~aaL~~l~~~~~~~~~r 370 (479)
T PRK14093 297 LAVLAAAELAGADLALAALALSQVQPAAGRGVR-HTLE--VGGGEATLIDESYN---ANPASMAAALGVLGRAPVGPQGR 370 (479)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCcCCcceE-EEee--cCCCCEEEEECCCC---CCHHHHHHHHHHHHhhhccCCCC
Confidence 456677888899887665 66774 33 32 2222 11334667764332 2233444455566654 2357
Q ss_pred EEEEEcCC--CcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCch
Q 020556 180 ITAVIPYF--GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSG 227 (324)
Q Consensus 180 ItlViPYl--pYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~ 227 (324)
+++|+.=| -|+|.++. -+.+++.+...++|.|+++..+..
T Consensus 371 ~i~V~G~m~elg~~~~~~--------h~~~~~~~~~~~~d~v~~~G~~~~ 412 (479)
T PRK14093 371 RIAVLGDMLELGPRGPEL--------HRGLAEAIRANAIDLVFCCGPLMR 412 (479)
T ss_pred EEEEECChHHcCcHHHHH--------HHHHHHHHHHcCCCEEEEEchhHH
Confidence 77888653 34554322 256888888889999999987653
No 116
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=80.39 E-value=24 Score=33.46 Aligned_cols=84 Identities=10% Similarity=0.235 Sum_probs=56.0
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHhCC-----------ce---eceEEeecCC----CceEEEec--cCcCCCcEEEEecCC
Q 020556 97 NRIKLFS-GTANPALSQEIACYMGV-----------EL---GKINIKRFAD----GEIYVQLQ--ESVRGCDVYLVQPTC 155 (324)
Q Consensus 97 ~~~~Ifs-gss~~~LA~~Ia~~Lg~-----------~l---~~i~~~rFpD----GE~~V~i~--esVrG~dV~IVqS~~ 155 (324)
+++.|++ ...+-.++..|.++|+. +. ..+.++.|-| ||+.+.-. .++.|++|+||....
T Consensus 81 ~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIi 160 (241)
T PTZ00149 81 EELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDII 160 (241)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccccccCCCEEEEEEeEe
Confidence 4455544 57777889998888871 23 6677777754 56665432 468999999987654
Q ss_pred CCchhhHHHHHHHHHHHHhcCCCeEEEEE
Q 020556 156 PPANENLMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 156 ~p~nd~LmELLl~idAlr~agAkrItlVi 184 (324)
.. -. -|..+++.|++.|+++|.++.
T Consensus 161 dT-G~---Tl~~~~~~L~~~g~~~V~va~ 185 (241)
T PTZ00149 161 DT-GN---TLVKFCEYLKKFEPKTIRIAT 185 (241)
T ss_pred Ch-HH---HHHHHHHHHHhcCCCEEEEEE
Confidence 31 12 234455778899999886554
No 117
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=80.32 E-value=19 Score=32.83 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=56.3
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHhCC--ceeceEEeecCCC-----ceEEEe--ccCcCCCcEEEEecCCCCchhhHHHHH
Q 020556 97 NRIKLFS-GTANPALSQEIACYMGV--ELGKINIKRFADG-----EIYVQL--QESVRGCDVYLVQPTCPPANENLMELL 166 (324)
Q Consensus 97 ~~~~Ifs-gss~~~LA~~Ia~~Lg~--~l~~i~~~rFpDG-----E~~V~i--~esVrG~dV~IVqS~~~p~nd~LmELL 166 (324)
+++.+++ ...+-.++..++.++++ ++.-+.+..|-+| +.++.- .++++|+||+||...-.. =.-|-
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDs----G~TLs 110 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDS----GLTLS 110 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEeccccc----ChhHH
Confidence 4454544 46777888899998875 4667888888665 455543 588999999998654321 11245
Q ss_pred HHHHHHHhcCCCeEEEE
Q 020556 167 IMIDACRRASAKNITAV 183 (324)
Q Consensus 167 l~idAlr~agAkrItlV 183 (324)
.+.+-|+..+|+++.++
T Consensus 111 ~i~~~l~~r~a~sv~i~ 127 (178)
T COG0634 111 KVRDLLKERGAKSVRIA 127 (178)
T ss_pred HHHHHHHhCCCCeEEEE
Confidence 55666777888887754
No 118
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=80.19 E-value=18 Score=32.75 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=50.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCce-EEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEI-YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~-~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
.+.+=.....-.+|..+|..|+++..-+.-.....|+. .+. ...++|+.|+||...-.. -.. |.-+++.++++|
T Consensus 66 d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~~~~~-~~~~~g~~VliVDDvi~t-G~T---l~~~~~~l~~~G 140 (202)
T PRK00455 66 DVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIE-GRRLFGKRVLVVEDVITT-GGS---VLEAVEAIRAAG 140 (202)
T ss_pred CEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCCceEE-ccCCCCCEEEEEecccCC-cHH---HHHHHHHHHHcC
Confidence 34333346788999999999999876554433333432 222 335679999999765432 122 445578889999
Q ss_pred CCeEE
Q 020556 177 AKNIT 181 (324)
Q Consensus 177 AkrIt 181 (324)
++.+.
T Consensus 141 a~~v~ 145 (202)
T PRK00455 141 AEVVG 145 (202)
T ss_pred CEEEE
Confidence 87654
No 119
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=80.04 E-value=13 Score=33.74 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=53.5
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceE---EEec---cCcCCCcEEEEecCCCCchhhHHHHHHHHHH
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIY---VQLQ---ESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~---V~i~---esVrG~dV~IVqS~~~p~nd~LmELLl~idA 171 (324)
...+=...+.-.+|..+|..||.++..+.-.++..|+.. ..+. ..++|++|+||...-.. -..+ .-++++
T Consensus 87 D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitT-G~Tl---~~ai~~ 162 (200)
T PRK02277 87 DVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITS-GTTM---KETIEY 162 (200)
T ss_pred CEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCc-hHHH---HHHHHH
Confidence 443333466779999999999999876665555333211 1111 45789999999765432 2333 445678
Q ss_pred HHhcCCCeEEEEE
Q 020556 172 CRRASAKNITAVI 184 (324)
Q Consensus 172 lr~agAkrItlVi 184 (324)
++++|++.+.++.
T Consensus 163 l~~~Ga~~v~v~v 175 (200)
T PRK02277 163 LKEHGGKPVAVVV 175 (200)
T ss_pred HHHcCCEEEEEEE
Confidence 8999998775444
No 120
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=79.96 E-value=13 Score=32.61 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeec------------CCCceEEEe--ccCcCCCcEEEEecCCCCchhhHHHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKRF------------ADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMID 170 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rF------------pDGE~~V~i--~esVrG~dV~IVqS~~~p~nd~LmELLl~id 170 (324)
...-.+|..+|+.||++...+.-... .+|+-.+.+ ....+|++|+||...... -. -+.-+++
T Consensus 55 ~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitT-G~---Tl~~a~~ 130 (169)
T TIGR01090 55 ARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLAT-GG---TAEATDE 130 (169)
T ss_pred hccHHHHHHHHHHHCCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccc-hH---HHHHHHH
Confidence 44569999999999998764433222 123222333 234589999998765432 12 2455678
Q ss_pred HHHhcCCCeEEE
Q 020556 171 ACRRASAKNITA 182 (324)
Q Consensus 171 Alr~agAkrItl 182 (324)
.++++|++.+.+
T Consensus 131 ~L~~~Ga~~v~~ 142 (169)
T TIGR01090 131 LIRKLGGEVVEA 142 (169)
T ss_pred HHHHcCCEEEEE
Confidence 889999976654
No 121
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=79.45 E-value=12 Score=30.22 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEee----------c--CCCceEEEeccCcCCCcEEEEecCCCCchhhHH
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKR----------F--ADGEIYVQLQESVRGCDVYLVQPTCPPANENLM 163 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~r----------F--pDGE~~V~i~esVrG~dV~IVqS~~~p~nd~Lm 163 (324)
+....+=-..+.-.+|..+|..|+.+........ . .+.+......+.+.|++|+||...... -..
T Consensus 27 ~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~t-G~T-- 103 (125)
T PF00156_consen 27 DFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDT-GGT-- 103 (125)
T ss_dssp TSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESS-SHH--
T ss_pred CCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcc-cHH--
Confidence 3334333356778999999999998766554321 1 111233344578899999998754322 122
Q ss_pred HHHHHHHHHHhcCCCeEEEEE
Q 020556 164 ELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 164 ELLl~idAlr~agAkrItlVi 184 (324)
+.-+++.++++|++.|.+++
T Consensus 104 -l~~~~~~L~~~g~~~v~~~v 123 (125)
T PF00156_consen 104 -LKEAIELLKEAGAKVVGVAV 123 (125)
T ss_dssp -HHHHHHHHHHTTBSEEEEEE
T ss_pred -HHHHHHHHHhCCCcEEEEEE
Confidence 45667889999999887665
No 122
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=78.75 E-value=13 Score=33.30 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCc-CCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeE
Q 020556 104 GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESV-RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNI 180 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esV-rG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrI 180 (324)
..+.-.+|..+|..||+++.-+.-.+-..|+-.. +...+ +|++|+||...-.. -. -+.-++++++++|++-+
T Consensus 66 ~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~~~~-~~g~~~~g~~VlIVDDvitT-G~---Tl~~~~~~l~~~Ga~vv 138 (176)
T PRK13812 66 ALGAVPLVAVTSVETGVPYVIARKQAKEYGTGNR-IEGRLDEGEEVVVLEDIATT-GQ---SAVDAVEALREAGATVN 138 (176)
T ss_pred ecchHHHHHHHHHHHCCCEEEEeccCCcCCCCCe-EEecCCCcCEEEEEEEeeCC-CH---HHHHHHHHHHHCCCeEE
Confidence 4556799999999999988766665555565433 23345 79999998754321 12 24556788889998643
No 123
>PLN02293 adenine phosphoribosyltransferase
Probab=78.14 E-value=27 Score=31.61 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCceE------------EEec-cCc-CCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 104 GTANPALSQEIACYMGVELGKINIKRFADGEIY------------VQLQ-ESV-RGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~------------V~i~-esV-rG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
....-.||..+|..||+++.-+.-.+..+|++. +.+. ..+ +|+.|+||...-.. -.. +.-++
T Consensus 70 e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitT-G~T---~~~~~ 145 (187)
T PLN02293 70 EARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIAT-GGT---LCAAI 145 (187)
T ss_pred CCCchHHHHHHHHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccc-hHH---HHHHH
Confidence 355678999999999998775554444333332 2221 334 68899998765321 122 35556
Q ss_pred HHHHhcCCCeEE
Q 020556 170 DACRRASAKNIT 181 (324)
Q Consensus 170 dAlr~agAkrIt 181 (324)
+.++++|++.+.
T Consensus 146 ~~l~~~Ga~~v~ 157 (187)
T PLN02293 146 NLLERAGAEVVE 157 (187)
T ss_pred HHHHHCCCEEEE
Confidence 889999987544
No 124
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=78.14 E-value=15 Score=36.64 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEE-EEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEc
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVY-LVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 185 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~-IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViP 185 (324)
..|-.++..||++...+. +..|.--+-+.++.+ +..+. |..+-.. | --.+.-.+++++... .++++|+-
T Consensus 260 laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e~~~---~~~~~vidDsya~--n--p~s~~~al~~l~~~~-~r~i~VlG 331 (417)
T TIGR01143 260 LAAAALALELGIPLEEIAEGLAELKLVKGRFEIQT---KNGLTLIDDTYNA--N--PDSMRAALDALARFP-GKKILVLG 331 (417)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeEEc---CCCcEEEEcCCCC--C--HHHHHHHHHHHHhCC-CCEEEEEc
Confidence 557778888998877665 566654333333322 22343 4443322 2 223344456676654 57778876
Q ss_pred CC----CcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHh
Q 020556 186 YF----GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (324)
Q Consensus 186 Yl----pYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~ 252 (324)
-+ .|++.. -+.+++.+...++|.||++.-+...+...++...........+.+++.+
T Consensus 332 ~~~e~G~~~~~~----------~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (417)
T TIGR01143 332 DMAELGEYSEEL----------HAEVGRYANSLGIDLVFLVGEEAAVIYDSLGCKGFHFADKDELLAFLKL 392 (417)
T ss_pred CchhcChHHHHH----------HHHHHHHHHHcCCCEEEEECHHHHHHHHhcccCcEEECCHHHHHHHHHH
Confidence 54 122211 2347778877778999999876544433332111122223445555544
No 125
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=76.93 E-value=30 Score=30.64 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=53.3
Q ss_pred CEEEEE-CCCCHHHHHHHHHHh----C--CceeceEEeecCCCc-----eE----EEeccCcCCCcEEEEecCCCCchhh
Q 020556 98 RIKLFS-GTANPALSQEIACYM----G--VELGKINIKRFADGE-----IY----VQLQESVRGCDVYLVQPTCPPANEN 161 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~L----g--~~l~~i~~~rFpDGE-----~~----V~i~esVrG~dV~IVqS~~~p~nd~ 161 (324)
+..|++ ....-.+|..+++.| | +++..+....|-|+. .. ..+..++.|++|+||...... -.
T Consensus 32 ~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidT-G~- 109 (176)
T PRK05205 32 NLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYT-GR- 109 (176)
T ss_pred CeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCc-HH-
Confidence 444443 566789999999999 4 335666666666542 11 234457899999999765432 12
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEEE
Q 020556 162 LMELLIMIDACRRAS-AKNITAVI 184 (324)
Q Consensus 162 LmELLl~idAlr~ag-AkrItlVi 184 (324)
-|..+++.+++.| +++|.++.
T Consensus 110 --Tl~~~~~~L~~~G~~~~v~~av 131 (176)
T PRK05205 110 --TIRAALDALFDYGRPARVQLAV 131 (176)
T ss_pred --HHHHHHHHHHhcCCCcEEEEEE
Confidence 2455678888888 67665443
No 126
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=75.27 E-value=29 Score=36.03 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=67.6
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEE-eecC------------CCceEEEe---ccCcCCCcEEEEecCCCCchhhH
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINI-KRFA------------DGEIYVQL---QESVRGCDVYLVQPTCPPANENL 162 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~-~rFp------------DGE~~V~i---~esVrG~dV~IVqS~~~p~nd~L 162 (324)
+.|---.+...+|..+++.+|++....-+ .++- +..++++. .+.+.|++|+||...... -..
T Consensus 298 ~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~t-G~T- 375 (479)
T PRK09123 298 VVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVR-GTT- 375 (479)
T ss_pred EEEEcCccHHHHHHHHHHhcCCCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCc-hHH-
Confidence 43433455668999999999999864222 2231 12233332 234789999998754321 122
Q ss_pred HHHHHHHHHHHhcCCCeEEEEE-----cCCCccc---ccccccCCcchhHHHHHHHHHHhCCCeEEEEc
Q 020556 163 MELLIMIDACRRASAKNITAVI-----PYFGYAR---ADRKTQGRESIAAKLVANLITEAGADRVLACD 223 (324)
Q Consensus 163 mELLl~idAlr~agAkrItlVi-----PYlpYaR---QDR~~~~gepisak~vA~lL~~~G~d~VitvD 223 (324)
|.-+++.||++||++|.+.+ -|=.|.- .++...-+--.+...|+ +..|+|.+.-+.
T Consensus 376 --l~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~~~~ei~---~~igadsl~yls 439 (479)
T PRK09123 376 --SRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATHSLEEMA---EYIGADSLAFLS 439 (479)
T ss_pred --HHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCCCHHHHH---HHhCCCeEeccC
Confidence 34678899999999999988 3444444 33321111112233333 445677776554
No 127
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=73.40 E-value=29 Score=30.69 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHhCCc-----eeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCe
Q 020556 105 TANPALSQEIACYMGVE-----LGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKN 179 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~-----l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkr 179 (324)
...-.+|..||..|+.+ +.-+.-.+...|+......+..+|+.|+||...... -. -+.-.++.++++|++
T Consensus 63 ~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~~g~~~~g~~VlIVDDvi~T-G~---Tl~~a~~~l~~~Ga~- 137 (173)
T TIGR00336 63 LGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVVEDVITT-GT---SILEAVEIIQAAGGQ- 137 (173)
T ss_pred cChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCceecCCCCCCEEEEEeccccC-hH---HHHHHHHHHHHcCCe-
Confidence 45669999999999988 443332222346554433444589999999765432 12 345667889999974
Q ss_pred EEEEEcCC
Q 020556 180 ITAVIPYF 187 (324)
Q Consensus 180 ItlViPYl 187 (324)
+..++-.+
T Consensus 138 v~~~~vlv 145 (173)
T TIGR00336 138 VAGVIIAV 145 (173)
T ss_pred EEEEEEEE
Confidence 44444444
No 128
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=72.87 E-value=11 Score=39.12 Aligned_cols=116 Identities=26% Similarity=0.308 Sum_probs=72.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEee------c--CCC---ceEEEe-----ccCcCCCcEEEEecCCCCchhhH
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKR------F--ADG---EIYVQL-----QESVRGCDVYLVQPTCPPANENL 162 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~r------F--pDG---E~~V~i-----~esVrG~dV~IVqS~~~p~nd~L 162 (324)
+.|=--.++...|-..|+.+|+++..--++. | |.. |.-|++ .+.|+||.|++|.. .|
T Consensus 286 vVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDD-------SI 358 (470)
T COG0034 286 VVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDD-------SI 358 (470)
T ss_pred EEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEcc-------cc
Confidence 4333345677899999999998866443332 2 333 223333 25678999998853 22
Q ss_pred HH---HHHHHHHHHhcCCCeEEEEE--------cCCCcccccccccCCcchhHH-HHHHHHHHhCCCeEEEEcCC
Q 020556 163 ME---LLIMIDACRRASAKNITAVI--------PYFGYARADRKTQGRESIAAK-LVANLITEAGADRVLACDLH 225 (324)
Q Consensus 163 mE---LLl~idAlr~agAkrItlVi--------PYlpYaRQDR~~~~gepisak-~vA~lL~~~G~d~VitvDlH 225 (324)
+. .--+++.+|++|||.|.+-| -||+---++|+ |-|++. .+-.+=+..|+|.+.-+++-
T Consensus 359 VRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~----eLIA~~~~~eeI~~~IgaDSL~yLsle 429 (470)
T COG0034 359 VRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTRE----ELIAANRTVEEIRKAIGADSLAYLSLE 429 (470)
T ss_pred ccCccHHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHH----HHhhCCCCHHHHHHHhCCCceeeecHH
Confidence 21 33456778999999999766 25555444443 334433 34444455688999988765
No 129
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=72.84 E-value=16 Score=38.14 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCc-------------eEEE---eccCcCCCcEEEEecCCCCchhhHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADGE-------------IYVQ---LQESVRGCDVYLVQPTCPPANENLMELLIM 168 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE-------------~~V~---i~esVrG~dV~IVqS~~~p~nd~LmELLl~ 168 (324)
.+...+|..+|+.+|+++..--+++--.|- ++.+ +.+.++||.|+||...... -.. |--+
T Consensus 302 ~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitT-GaT---l~~~ 377 (501)
T PRK09246 302 DTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVR-GTT---SEQI 377 (501)
T ss_pred ccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccc-cHH---HHHH
Confidence 445689999999999987643232211111 1111 2356889999998654321 122 2346
Q ss_pred HHHHHhcCCCeEEEEEc--------CCCcccccccccCCcchhHHH-HHHHHHHhCCCeEEEEcCC
Q 020556 169 IDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKL-VANLITEAGADRVLACDLH 225 (324)
Q Consensus 169 idAlr~agAkrItlViP--------YlpYaRQDR~~~~gepisak~-vA~lL~~~G~d~VitvDlH 225 (324)
+.+||++||++|.+.+- ||+-.-.+|. |-|+++. +-++=+..|+|.+.-+.+.
T Consensus 378 ~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~----eLia~~~~~e~i~~~ig~dsl~yls~~ 439 (501)
T PRK09246 378 VQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTAN----ELIAHGRTVEEIRQIIGADGLIYQDLE 439 (501)
T ss_pred HHHHHHcCCCEEEEEEEccccccCcccccCCCCHH----HHhhcCCCHHHHHHHhCCCeEeecCHH
Confidence 78999999999987652 3433332222 4443332 2233345678888776554
No 130
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=71.19 E-value=27 Score=28.34 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=48.7
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCC
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agA 177 (324)
++.+++.-.+..+|+.++.+|.. ++. ...-..|+|....-...+..+|++|+=|.+.. +. |++-++..+|+.|+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~-~g~-~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~-t~---~~~~~~~~a~~~g~ 75 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS-TGT-PAFFLHPTEALHGDLGMVTPGDVVIAISNSGE-TD---ELLNLLPHLKRRGA 75 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc-CCC-ceEEcccchhhccccCcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHCCC
Confidence 35566655677888888888743 332 22334666654444455656788888776543 34 44556677888887
Q ss_pred CeEEE
Q 020556 178 KNITA 182 (324)
Q Consensus 178 krItl 182 (324)
+-|.+
T Consensus 76 ~vi~i 80 (128)
T cd05014 76 PIIAI 80 (128)
T ss_pred eEEEE
Confidence 65543
No 131
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.74 E-value=44 Score=33.66 Aligned_cols=150 Identities=12% Similarity=0.151 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 020556 108 PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 187 (324)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYl 187 (324)
-..|-.+|..+|.+...-.+..|.--+-+.++-... ..+.+|... .+.|-+ -++.|++....++|++|+=
T Consensus 237 alaA~a~a~~~G~~~~~~~L~~f~~~~~R~e~~~~~--~gv~~idDs-~~tn~~-----a~~~al~~~~~~~ii~IlG-- 306 (401)
T PRK03815 237 ALLALAVYKILFDELDYERLNAFKIGKHKLEEFRDK--QGRLWVDDS-KATNVD-----ATLQALKRYKDKKIHLILG-- 306 (401)
T ss_pred HHHHHHHHHHhCcHHHHHHHHhCCCCCceEEEEEEE--CCEEEEECC-CCCCHH-----HHHHHHHhCCCCCEEEEEC--
Confidence 355666777788322222467787777777765444 246677654 333332 3456666553358888887
Q ss_pred CcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhccccc---CCccceeeehHHHHHHHHhcCCCCCCeEEEe
Q 020556 188 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLVVVS 264 (324)
Q Consensus 188 pYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF---~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVs 264 (324)
|. | +++.. ..+++.+..... .|+++..+...+...+ +.++........+.+++.+. ....+.|++|
T Consensus 307 G~---~----k~~~~--~~l~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~~~~~~~~~~e~av~~~~~~-~~~gdvVLlS 375 (401)
T PRK03815 307 GD---D----KGVDL--TPLFEFMKNLNI-ELYAIGSNTEKIQALAKEFNIKAFVCEFLEKAVEEIKKV-LKQNEVALLS 375 (401)
T ss_pred CC---C----CCCCH--HHHHHHHHhhCc-EEEEECCCHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHh-CCCCCEEEeC
Confidence 31 1 12333 256777776665 5999987765444322 22332222345555666543 2356789999
Q ss_pred CCCCchHHHHHHHH
Q 020556 265 PDVGGVARARAFAK 278 (324)
Q Consensus 265 PD~Ga~kRA~~~A~ 278 (324)
|-.-+-..-++|.+
T Consensus 376 Pa~aSfd~f~ny~~ 389 (401)
T PRK03815 376 PAAASLDQFKSYKE 389 (401)
T ss_pred hhhhccccccCHHH
Confidence 99888776666654
No 132
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=70.07 E-value=51 Score=31.04 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHH
Q 020556 167 IMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVI 246 (324)
Q Consensus 167 l~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l 246 (324)
=+++||+..|++||-++-||.+. + ...+.+.|+..|++-+-..-+-. ..-+ .+-.+.+ ..+
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~------------v-~~~~~~~l~~~G~eV~~~~~~~~---~~~~--~ia~i~p-~~i 170 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPE------------T-SRPMAQYFAVRGFEIVNFTCLGL---TDDR--EMARISP-DCI 170 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHH------------H-HHHHHHHHHhCCcEEeeeeccCC---CCCc--eeeecCH-HHH
Confidence 36789999999999999999863 1 33477888999975433322111 0001 1222322 233
Q ss_pred HHHHHhcC-CCCCCeEEEeCCCCchHHHHHHHHHcCCCCEE
Q 020556 247 LDYLASKT-VSSNDLVVVSPDVGGVARARAFAKKLSDAPLA 286 (324)
Q Consensus 247 ~~yl~~~~-~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~ 286 (324)
.+.+++.. .+.+-.+|.+-+.-....+..+-+.|| .|+.
T Consensus 171 ~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lG-kPVl 210 (239)
T TIGR02990 171 VEAALAAFDPDADALFLSCTALRAATCAQRIEQAIG-KPVV 210 (239)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHC-CCEE
Confidence 44444321 233445566677777777777777786 5764
No 133
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=70.02 E-value=18 Score=37.86 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCc-------------eEEE---eccCcCCCcEEEEecCCCCchhhHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADGE-------------IYVQ---LQESVRGCDVYLVQPTCPPANENLMELLIM 168 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE-------------~~V~---i~esVrG~dV~IVqS~~~p~nd~LmELLl~ 168 (324)
.+...+|..+|+.+|+++...-+++.--|. +..+ +.+.++||.|+||...... -. -+.-+
T Consensus 321 ~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvItt-Gt---Tl~~~ 396 (500)
T PRK07349 321 DSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVR-GT---TSRKI 396 (500)
T ss_pred cccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCC-cH---HHHHH
Confidence 445688999999999998754444322221 1122 2456789999998653221 12 23456
Q ss_pred HHHHHhcCCCeEEEEEc-----CCCcccccccccCCcchhHHH-HHHHHHHhCCCeEEEEcC
Q 020556 169 IDACRRASAKNITAVIP-----YFGYARADRKTQGRESIAAKL-VANLITEAGADRVLACDL 224 (324)
Q Consensus 169 idAlr~agAkrItlViP-----YlpYaRQDR~~~~gepisak~-vA~lL~~~G~d~VitvDl 224 (324)
+.+||++||+.|.+-|- |=+|---|-..+ .|-|+++. +-++=+..|+|.+.-+.+
T Consensus 397 ~~~Lr~aGAkeV~~~i~sPp~~~pc~ygid~~~~-~eLia~~~~~eei~~~igadsl~yls~ 457 (500)
T PRK07349 397 VKALRDAGATEVHMRISSPPVTHPCFYGIDTDTQ-DQLIAATKSVEEIAEQIGVDSLAYLSW 457 (500)
T ss_pred HHHHHHhCCeEEEEEeCCCcccccccccCCCCCH-HHHhhcCCCHHHHHHHhCCCeEeccCH
Confidence 79999999999998751 122323332221 13333222 223334567787766644
No 134
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=68.86 E-value=4.8 Score=41.59 Aligned_cols=78 Identities=27% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEE-EEeEeCCCCc------------ee-EE-EeeeecCC
Q 020556 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGHNV------------AE-VM-NLIGDVKG 309 (324)
Q Consensus 245 ~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~-~~K~R~~~~~------------~e-~~-~lvGDVkG 309 (324)
-+.+.|.++..-..|.||==||.| ..-|--||+.+| .|+.. +-|.|-...+ +. .+ .+...|+|
T Consensus 271 ~mG~~La~e~~~eaDvVipVPDSg-~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~G 348 (470)
T COG0034 271 RMGEKLAEEIPVEADVVIPVPDSG-RPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKG 348 (470)
T ss_pred HHHHHHHHhCCccccEEEecCCCC-hHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCC
Confidence 355566554332234455557765 677888999997 67543 3354421110 10 01 23446899
Q ss_pred CeEEEEecccccCCC
Q 020556 310 KVAVMVDDMIDTAGW 324 (324)
Q Consensus 310 k~vIIVDDIIdTGGs 324 (324)
|+|++|||=|=.|.|
T Consensus 349 KrVvlVDDSIVRGTT 363 (470)
T COG0034 349 KRVVLVDDSIVRGTT 363 (470)
T ss_pred CeEEEEccccccCcc
Confidence 999999998876653
No 135
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=68.33 E-value=25 Score=31.71 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCC------------ce--EEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADG------------EI--YVQLQESVRGCDVYLVQPTCPPANENLMELLIMID 170 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDG------------E~--~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~id 170 (324)
...-.||..+|..+++++..+.-.+++.. .+ .+.+....+|++|+||...-.. -.. +.-+++
T Consensus 60 ~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitT-G~T---~~~ai~ 135 (187)
T PRK12560 60 DKGAPLATPVSLLSGKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLST-GGT---VIALIK 135 (187)
T ss_pred cccHHHHHHHHHhhCCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEecccc-CHH---HHHHHH
Confidence 55779999999999998766553333322 11 1222334579999998754321 122 355678
Q ss_pred HHHhcCCCeEE
Q 020556 171 ACRRASAKNIT 181 (324)
Q Consensus 171 Alr~agAkrIt 181 (324)
.++++||+-+-
T Consensus 136 ll~~aGa~vv~ 146 (187)
T PRK12560 136 AIENSGGIVSD 146 (187)
T ss_pred HHHHCCCEEEE
Confidence 89999996543
No 136
>PRK11595 DNA utilization protein GntX; Provisional
Probab=66.89 E-value=14 Score=34.04 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCceeceEEeecCC--------C-------ceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHH
Q 020556 108 PALSQEIACYMGVELGKINIKRFAD--------G-------EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDAC 172 (324)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~i~~~rFpD--------G-------E~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAl 172 (324)
..||+.+++.+++++..-.+.+-.+ . .-...+.+++.|++|+||...... -.. |.-++++|
T Consensus 135 ~~la~~la~~~~~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tT-G~T---l~~~~~~L 210 (227)
T PRK11595 135 DLLCRPLARWLGCDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTT-GST---VAEIAQLL 210 (227)
T ss_pred HHHHHHHHHHHCCCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecc-hHH---HHHHHHHH
Confidence 3789999999998754221222111 0 111223456788999988765432 122 34567888
Q ss_pred HhcCCCeEEEE
Q 020556 173 RRASAKNITAV 183 (324)
Q Consensus 173 r~agAkrItlV 183 (324)
+++|+++|.++
T Consensus 211 ~~~g~~~V~~~ 221 (227)
T PRK11595 211 LRNGAASVQVW 221 (227)
T ss_pred HHcCCcEEEEE
Confidence 99999988754
No 137
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=64.01 E-value=25 Score=36.54 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHhCCceeceEEee-c-----C--CC---ceEEE-----eccCcCCCcEEEEecCCCCchhhHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKR-F-----A--DG---EIYVQ-----LQESVRGCDVYLVQPTCPPANENLMELLIM 168 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~r-F-----p--DG---E~~V~-----i~esVrG~dV~IVqS~~~p~nd~LmELLl~ 168 (324)
.+...+|..+|+.+|++....-+++ + . +. +..++ +.+.++||.|++|...... -.. |--+
T Consensus 292 ~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvitt-GtT---l~~~ 367 (471)
T PRK06781 292 DSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVR-GTT---SKRI 367 (471)
T ss_pred hhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceecc-chH---HHHH
Confidence 4456889999999999876533321 2 1 21 11121 1355788999988643211 111 2346
Q ss_pred HHHHHhcCCCeEEEEE--c------CCCcccccccccCCcchhHHH-HHHHHHHhCCCeEEEEc
Q 020556 169 IDACRRASAKNITAVI--P------YFGYARADRKTQGRESIAAKL-VANLITEAGADRVLACD 223 (324)
Q Consensus 169 idAlr~agAkrItlVi--P------YlpYaRQDR~~~~gepisak~-vA~lL~~~G~d~VitvD 223 (324)
+.+||++||++|.+.| | ||+.--.+|+ |-|+++. +-++=+..|+|.+--+-
T Consensus 368 ~~~Lk~aGA~eV~v~i~sPpi~~pc~yGid~~~~~----elia~~~~~eei~~~igadsl~yls 427 (471)
T PRK06781 368 VRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRK----ELIAANHTVEEIREMIGADSLTFLS 427 (471)
T ss_pred HHHHHHcCCcEEEEEECCCCccCCcccccCCCCHH----HHHhcCCCHHHHHHHhCCCEEeccC
Confidence 7889999999999887 2 5554433332 3333222 23344445667665543
No 138
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.80 E-value=34 Score=35.04 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
-.|-.+|..||++...+. +..|.--+-+.++-.... .+.++... .+.| .-.+ ..|++.. .+++++|+-
T Consensus 326 laAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~--g~~~idDs-~~tn--~~s~---~~al~~~-~~~ii~IlG- 395 (498)
T PRK02006 326 LAALALARAIGLPAAPLLHGLREYRGEPHRVELVATID--GVDYYDDS-KGTN--VGAT---VAALDGL-AQRVVLIAG- 395 (498)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEEC--CEEEEEcC-CCCC--HHHH---HHHHHhC-CCCEEEEEc-
Confidence 457778888898876655 667755554555433332 34455533 2223 2222 2444443 357888864
Q ss_pred CCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhccccc---CCccceeeehHHHHHHHHhcCCCCCCeEEE
Q 020556 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (324)
Q Consensus 187 lpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF---~ipv~nL~~~~~l~~yl~~~~~~~~~~vVV 263 (324)
-.+.|..+ ++ +.+.+.. .+|.|+++..+...+...+ ++++..........+++.+.. ...+.|++
T Consensus 396 --g~~~~~~~---~~-----~~~~l~~-~~~~vi~~G~~~~~i~~~~~~~~~~~~~~~~~~eAi~~a~~~~-~~gd~VLl 463 (498)
T PRK02006 396 --GDGKGQDF---SP-----LAAPVAR-HARAVVLIGRDAPAIRAALAGTGVPLVDAATLEEAVRAAAALA-QPGDAVLL 463 (498)
T ss_pred --CCCCCCCH---HH-----HHHHHHH-hCCEEEEEcCCHHHHHHHHhhCCCceEecCCHHHHHHHHHHhc-CCCCEEEE
Confidence 22333221 22 2344433 2699999987765554322 223322233455556665432 35688999
Q ss_pred eCCCCchHHHHHHHH
Q 020556 264 SPDVGGVARARAFAK 278 (324)
Q Consensus 264 sPD~Ga~kRA~~~A~ 278 (324)
+|..++...-+.|.+
T Consensus 464 sp~~~S~d~f~~~~~ 478 (498)
T PRK02006 464 SPACASLDMFRNYAH 478 (498)
T ss_pred ChhhcccccccCHHH
Confidence 999988776665554
No 139
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=62.36 E-value=39 Score=31.05 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
|.++++|.|......+.+.++. +...-||.+++++++..|+..|++ ...++.
T Consensus 30 g~~vvvV~Sg~~~~t~~l~~~~---------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~-a~~l~~ 81 (227)
T cd04234 30 GNRVVVVVSAMGGVTDLLIELA---------------------------LLLSFGERLSARLLAAALRDRGIK-ARSLDA 81 (227)
T ss_pred CCCEEEEEcCCCcccHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHCCCC-eEEeCH
Confidence 6788889887766677776654 233358999999999999999974 444443
Q ss_pred C
Q 020556 225 H 225 (324)
Q Consensus 225 H 225 (324)
+
T Consensus 82 ~ 82 (227)
T cd04234 82 R 82 (227)
T ss_pred H
Confidence 3
No 140
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=62.30 E-value=69 Score=30.11 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=47.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecC-------------CCc-eEEEec--cCcCCCcEEEEecCCCCchhh
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFA-------------DGE-IYVQLQ--ESVRGCDVYLVQPTCPPANEN 161 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFp-------------DGE-~~V~i~--esVrG~dV~IVqS~~~p~nd~ 161 (324)
...+-.....-.||..+|..||+++.-+.-.+.+ .|. ....++ .-.+|+.|+||...-.. -.
T Consensus 113 D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~T-G~- 190 (238)
T PRK08558 113 DVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRS-GE- 190 (238)
T ss_pred CEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEeccccc-CH-
Confidence 4545556778899999999999997754332211 111 112222 22478899988654321 11
Q ss_pred HHHHHHHHHHHHhcCCCeE
Q 020556 162 LMELLIMIDACRRASAKNI 180 (324)
Q Consensus 162 LmELLl~idAlr~agAkrI 180 (324)
-+.-+++.++++||+-+
T Consensus 191 --Tl~~~~~ll~~~ga~vv 207 (238)
T PRK08558 191 --TQRALLDLARQAGADVV 207 (238)
T ss_pred --HHHHHHHHHHHcCCEEE
Confidence 25667788888898533
No 141
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=61.78 E-value=1e+02 Score=26.38 Aligned_cols=102 Identities=23% Similarity=0.248 Sum_probs=67.4
Q ss_pred chhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCcc
Q 020556 158 ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 237 (324)
Q Consensus 158 ~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv 237 (324)
.++.-.|+|=....+++..-..+++++ ++ ..+=....+.+.|..+|+|+|+.++- +...+ |+
T Consensus 13 l~~~~~e~l~~A~~La~~~g~~v~av~--~G----------~~~~~~~~l~~~l~~~G~d~v~~~~~--~~~~~-~~--- 74 (164)
T PF01012_consen 13 LNPVSLEALEAARRLAEALGGEVTAVV--LG----------PAEEAAEALRKALAKYGADKVYHIDD--PALAE-YD--- 74 (164)
T ss_dssp E-HHHHHHHHHHHHHHHCTTSEEEEEE--EE----------TCCCHHHHHHHHHHSTTESEEEEEE---GGGTT-C----
T ss_pred cCHHHHHHHHHHHHHHhhcCCeEEEEE--Ee----------cchhhHHHHhhhhhhcCCcEEEEecC--ccccc-cC---
Confidence 466677888888888776545788776 11 11223556777888899999999971 11111 21
Q ss_pred ceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcC
Q 020556 238 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS 281 (324)
Q Consensus 238 ~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~ 281 (324)
.......+++.+++. ..+.|+++....+..-+-.+|.+|+
T Consensus 75 -~~~~a~~l~~~~~~~---~~~lVl~~~t~~g~~la~~lA~~L~ 114 (164)
T PF01012_consen 75 -PEAYADALAELIKEE---GPDLVLFGSTSFGRDLAPRLAARLG 114 (164)
T ss_dssp -HHHHHHHHHHHHHHH---T-SEEEEESSHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhc---CCCEEEEcCcCCCCcHHHHHHHHhC
Confidence 111245677777764 3568888888899999999999997
No 142
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=61.33 E-value=40 Score=32.91 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCC-------CchHHH
Q 020556 201 SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV-------GGVARA 273 (324)
Q Consensus 201 pisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~-------Ga~kRA 273 (324)
-.+...=..+|+++|+|.++.++ |+-.+.++++...+-++|.++. .-+.+||+-|. |.+..-
T Consensus 69 l~t~eeR~~~l~~~gVD~~~~~~---------F~~~~~~ls~e~Fi~~~l~~~l--~~~~iVvG~Df~FG~~~~G~~~~L 137 (305)
T PRK05627 69 LTPLRDKAELLAELGVDYVLVLP---------FDEEFAKLSAEEFIEDLLVKGL--NAKHVVVGFDFRFGKKRAGDFELL 137 (305)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec---------CCHHHhcCCHHHHHHHHHHhcc--CCCEEEECCCCCCCCCCCCCHHHH
Confidence 34567778899999999999987 4444556777666666665431 23568999988 466777
Q ss_pred HHHHHHcCCCCEEEEEeEe
Q 020556 274 RAFAKKLSDAPLAIVDKRR 292 (324)
Q Consensus 274 ~~~A~~L~~~~~~~~~K~R 292 (324)
+++++.+| ..+.+++...
T Consensus 138 ~~~~~~~g-~~v~~v~~~~ 155 (305)
T PRK05627 138 KEAGKEFG-FEVTIVPEVK 155 (305)
T ss_pred HHHHHHcC-cEEEEeccEe
Confidence 77777776 5777776654
No 143
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=60.95 E-value=19 Score=31.68 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCceeceEEeecCCCceEEEe--ccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEE
Q 020556 109 ALSQEIACYMGVELGKINIKRFADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITA 182 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i--~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItl 182 (324)
.+..++-+..|++.... ..|.-.|-.++- ++++ ||+.|.++.. ...-..--++++||++|+..|.+
T Consensus 30 kvia~~l~d~GfeVi~~--g~~~tp~e~v~aA~~~dv---~vIgvSsl~g---~h~~l~~~lve~lre~G~~~i~v 97 (143)
T COG2185 30 KVIARALADAGFEVINL--GLFQTPEEAVRAAVEEDV---DVIGVSSLDG---GHLTLVPGLVEALREAGVEDILV 97 (143)
T ss_pred HHHHHHHHhCCceEEec--CCcCCHHHHHHHHHhcCC---CEEEEEeccc---hHHHHHHHHHHHHHHhCCcceEE
Confidence 34444444456655332 333333333322 3443 8999998864 33444567899999999999984
No 144
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.77 E-value=55 Score=32.66 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEE
Q 020556 107 NPALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlVi 184 (324)
|-..|-.++..||++...+. +..|.--+-+.++-..+.| -.+|..+. +.|-. . +..|++.. .+++++|+
T Consensus 279 Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~g-~~vi~D~~--a~N~~--s---~~~al~~~-~~~ii~I~ 349 (447)
T PRK02472 279 NALAAIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDG-RKFYNDSK--ATNIL--A---TQKALSGF-NQPVVLLA 349 (447)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcceEEEEECC-eEEEECCC--CCCHH--H---HHHHHHhC-CCCEEEEE
Confidence 33667778888898876655 5666654445554333323 23444442 22322 2 23455554 35677776
Q ss_pred cCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhccccc---CCccceeeehHHHHHHHHhcCCCCCCeE
Q 020556 185 PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLV 261 (324)
Q Consensus 185 PYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF---~ipv~nL~~~~~l~~yl~~~~~~~~~~v 261 (324)
- ++.|. + ....+++.|.. +|.|+++-.+...+...+ +.++..........+++.+.. ..++.|
T Consensus 350 g--~~~~~-~--------~~~~l~~~l~~--~~~v~~~G~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~d~V 415 (447)
T PRK02472 350 G--GLDRG-N--------EFDELVPYLKN--VKAMVVFGETAEKLARAAEKAGITVVEADNVEDAVPKAYELS-EPGDVI 415 (447)
T ss_pred C--CCCCC-C--------CHHHHHHHHhc--cCEEEEECCCHHHHHHHHHhCCCceEEcCCHHHHHHHHHHhC-CCCCEE
Confidence 4 23331 1 12345666654 799999977765444332 122222223344555554322 346788
Q ss_pred EEeCCCCchHHHHHHH
Q 020556 262 VVSPDVGGVARARAFA 277 (324)
Q Consensus 262 VVsPD~Ga~kRA~~~A 277 (324)
+++|-.-...+-++|+
T Consensus 416 Lls~a~~s~d~f~~~~ 431 (447)
T PRK02472 416 LLSPACASWDQYKTFE 431 (447)
T ss_pred EeCccccccccccCHH
Confidence 9999765555544444
No 145
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=60.64 E-value=85 Score=27.89 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeec--CCCce--------------EEE---eccCcCCCcEEEEecCCCCchhhHHH
Q 020556 104 GTANPALSQEIACYMGVELGKINIKRF--ADGEI--------------YVQ---LQESVRGCDVYLVQPTCPPANENLME 164 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~rF--pDGE~--------------~V~---i~esVrG~dV~IVqS~~~p~nd~LmE 164 (324)
..+.-.+|..+|+.||+++.-+.-.+- .+++. ... ....++|++|+||...... -..+
T Consensus 60 ~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~Tl-- 136 (178)
T PRK07322 60 ETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVST-GGTL-- 136 (178)
T ss_pred ccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccc-cHHH--
Confidence 455779999999999999754432221 22211 100 0123679999998765432 1223
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCcccccc
Q 020556 165 LLIMIDACRRASAKNITAVIPYFGYARADR 194 (324)
Q Consensus 165 LLl~idAlr~agAkrItlViPYlpYaRQDR 194 (324)
.-+++.++++||+.+. ++=.+.|..++-
T Consensus 137 -~aa~~~L~~~GA~~V~-~~~v~~~~~~~~ 164 (178)
T PRK07322 137 -TALERLVERAGGQVVA-KAAIFAEGDASN 164 (178)
T ss_pred -HHHHHHHHHcCCEEEE-EEEEEEcCCCCC
Confidence 4556778999997654 344455555543
No 146
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=59.21 E-value=23 Score=36.84 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhCCceeceEEee------cCCC-----ceEE--Ee---ccCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 106 ANPALSQEIACYMGVELGKINIKR------FADG-----EIYV--QL---QESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 106 s~~~LA~~Ia~~Lg~~l~~i~~~r------FpDG-----E~~V--~i---~esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
++..+|..+|+.+|+++...-+++ |.-- +..+ .+ .+.++||.|++|...... -.. |--++
T Consensus 293 s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsitt-GtT---l~~~~ 368 (475)
T PRK07631 293 SSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVR-GTT---SRRIV 368 (475)
T ss_pred hHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeecc-HHH---HHHHH
Confidence 445799999999999986533331 2221 1011 11 345678888877543211 121 22456
Q ss_pred HHHHhcCCCeEEEEE
Q 020556 170 DACRRASAKNITAVI 184 (324)
Q Consensus 170 dAlr~agAkrItlVi 184 (324)
.+||++||++|.+.+
T Consensus 369 ~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 369 TMLREAGATEVHVRI 383 (475)
T ss_pred HHHHHcCCCEEEEEE
Confidence 788888888888776
No 147
>PRK05569 flavodoxin; Provisional
Probab=58.46 E-value=1.1e+02 Score=25.44 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=51.7
Q ss_pred EEEEEC--CCC-HHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHH---HHHHHHHHH
Q 020556 99 IKLFSG--TAN-PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLM---ELLIMIDAC 172 (324)
Q Consensus 99 ~~Ifsg--ss~-~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~Lm---ELLl~idAl 172 (324)
+.|+.+ +.| ..+|+.|++.+.-.-.++++....+-.. .++...|.+++.+-.. +...+ ++.-+++.+
T Consensus 4 i~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~-----~~~~~~d~iilgsPty--~~~~~~~~~~~~~~~~l 76 (141)
T PRK05569 4 VSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKV-----EDVLEADAVAFGSPSM--DNNNIEQEEMAPFLDQF 76 (141)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCH-----HHHhhCCEEEEECCCc--CCCcCChHHHHHHHHHh
Confidence 444444 433 5899999998632111234443333221 3556678888776322 11111 234555555
Q ss_pred HhcC--CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCC
Q 020556 173 RRAS--AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGAD 217 (324)
Q Consensus 173 r~ag--AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d 217 (324)
+... -|.+.++--| ++. .++ ..+.+.++|+..|++
T Consensus 77 ~~~~~~~K~v~~f~t~-g~~-------~~~--~~~~~~~~l~~~g~~ 113 (141)
T PRK05569 77 KLTPNENKKCILFGSY-GWD-------NGE--FMKLWKDRMKDYGFN 113 (141)
T ss_pred hccCcCCCEEEEEeCC-CCC-------CCc--HHHHHHHHHHHCCCe
Confidence 5432 3455444433 432 122 356678888887754
No 148
>PRK08105 flavodoxin; Provisional
Probab=57.26 E-value=84 Score=27.11 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=55.1
Q ss_pred CEEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCC--CchhhHHHHHHHHHHH
Q 020556 98 RIKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP--PANENLMELLIMIDAC 172 (324)
Q Consensus 98 ~~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~--p~nd~LmELLl~idAl 172 (324)
++.||.||. +..+|++|++.|.-.-.++.+..-.| +. .+ +.....-|+++.|++. ..-++..+++-. +
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~--~~-~~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~---l 75 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE--LS-DW-QPYQDELVLVVTSTTGQGDLPDSIVPLFQA---L 75 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh--CC-ch-hcccCCeEEEEECCCCCCCCChhHHHHHHH---H
Confidence 578888876 45888888888853222333332222 11 11 1111245677777752 112555554433 3
Q ss_pred Hhc----CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEE
Q 020556 173 RRA----SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (324)
Q Consensus 173 r~a----gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vi 220 (324)
++. .-+++ +|+- =-|+.. +.---.++.+.+.|+..|+.+|.
T Consensus 76 ~~~~~~l~~~~~-avfG-----lGds~Y-~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 76 KDTAGYQPNLRY-GVIA-----LGDSSY-DNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HhcCcccCCCEE-EEEe-----eecCCH-HHHHHHHHHHHHHHHHCCCeEee
Confidence 332 11232 2221 111111 11123578889999999998876
No 149
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=56.91 E-value=12 Score=35.91 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCEEEEECCCC---HHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEE--ecCCCCchhhHHHHHHHHH
Q 020556 96 NNRIKLFSGTAN---PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV--QPTCPPANENLMELLIMID 170 (324)
Q Consensus 96 ~~~~~Ifsgss~---~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IV--qS~~~p~nd~LmELLl~id 170 (324)
+..+-|+.||+- ..|+..+-...-++.++ |.|++.+ ..+.|++|+++ |...+...-.-+..-.-+.
T Consensus 7 ~~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~------p~~~l~~---g~l~g~~v~~l~RhGr~H~y~~~~i~~~a~i~ 77 (267)
T PRK08564 7 KASIGIIGGSGLYDPGIFENSKEVKVYTPYGE------PSDNIII---GEIEGVEVAFLPRHGRGHRIPPHKINYRANIW 77 (267)
T ss_pred CceEEEEecCCCCCCcccccceeeeEEcCCCC------CccCEEE---EEECCEEEEEEeCCCCCcccCCccCcchHHHH
Confidence 557889989886 44544443333333332 4455544 23568899988 5432211111222356688
Q ss_pred HHHhcCCCeEEE
Q 020556 171 ACRRASAKNITA 182 (324)
Q Consensus 171 Alr~agAkrItl 182 (324)
++|.+|++.|.+
T Consensus 78 aLk~LGvk~iI~ 89 (267)
T PRK08564 78 ALKELGVEWVIA 89 (267)
T ss_pred HHHHCCCcEEEE
Confidence 999999998875
No 150
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=56.35 E-value=51 Score=32.57 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=76.1
Q ss_pred eeeecccccccCCCCCCCcccccccccchhhhhhhhhhhhhccCCCCEEEEECCC-CHHHHHHHHHHhCCceeceEEeec
Q 020556 52 AVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTA-NPALSQEIACYMGVELGKINIKRF 130 (324)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ifsgss-~~~LA~~Ia~~Lg~~l~~i~~~rF 130 (324)
.|.|+.-.+--.+.+ ..|+.+.|..|.....-+.+... -.+..|.|-.. .-.=+..+|.+|+.....+.-.+=
T Consensus 124 vItmDlHa~Q~qgfF--~ipVdnly~~p~~l~~ir~~~~~----~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~ 197 (316)
T KOG1448|consen 124 VITMDLHASQIQGFF--DIPVDNLYAEPAVLNYIRENIPD----SENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERR 197 (316)
T ss_pred EEEecccchhhCcee--eccchhhccchHHHHHHHhhCCC----ccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhh
Confidence 455554433322222 35566777777777666664222 23355554333 335577788888876655444433
Q ss_pred CCCceE--EEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Q 020556 131 ADGEIY--VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYA 190 (324)
Q Consensus 131 pDGE~~--V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYa 190 (324)
.--|+. .-+-.+|+|+-++||..+-.. -=-|.-..+-|.+.||++|.++.+.-=++
T Consensus 198 k~~~v~~~m~LVGDv~gkvailVDDm~dt----~GTl~~aa~~L~~~GA~kV~a~~THgVfs 255 (316)
T KOG1448|consen 198 KANEVDIRMVLVGDVKGKVAILVDDMADT----CGTLIKAADKLLEHGAKKVYAIVTHGVFS 255 (316)
T ss_pred cccccceEEEEEeccCCcEEEEecccccc----cchHHHHHHHHHhcCCceEEEEEcceecc
Confidence 333433 334579999999998765321 11245566777889999999988876443
No 151
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=56.11 E-value=47 Score=30.60 Aligned_cols=72 Identities=6% Similarity=-0.015 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCce-EEEecc-CcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeE
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADGEI-YVQLQE-SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNI 180 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~-~V~i~e-sVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrI 180 (324)
...-.+|..+|..+|+++....-..--.|+. .+++.. ..+|++|+||...-.. -.. +.-.+++++++|++-+
T Consensus 76 ~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTT-G~T---i~~a~~~L~~~G~~vv 149 (206)
T PRK13809 76 YTALTLATSISLKYNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSS-GKS---IIETAVALEEEGLVVR 149 (206)
T ss_pred CccHHHHHHHHHHhCCCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEecccc-CHH---HHHHHHHHHHCCCEEE
Confidence 3466899999999999987655423333543 333433 3478999998654221 122 3456778888998633
No 152
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=55.78 E-value=8.4 Score=31.12 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=52.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.+++.|++.-.+..+|+..+.+| .+++.....-+..+|..-.....+.-.|++|+=|... .+.++ +-.+..+|+.
T Consensus 5 ~~~i~i~G~G~s~~~A~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg-~~~~~---~~~~~~ak~~ 79 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQYAALKL-QKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSG-ETREL---IELLRFAKER 79 (131)
T ss_dssp SSEEEEEESTHHHHHHHHHHHHH-HHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSS-TTHHH---HHHHHHHHHT
T ss_pred CCEEEEEEcchHHHHHHHHHHHH-HHhcCcceeccchHHHhhhhcccccccceeEeeeccc-cchhh---hhhhHHHHhc
Confidence 34677777666778898888888 5566666666666664444344555568777766533 24444 4455578888
Q ss_pred CCCeEEE
Q 020556 176 SAKNITA 182 (324)
Q Consensus 176 gAkrItl 182 (324)
|++-|.+
T Consensus 80 g~~vi~i 86 (131)
T PF01380_consen 80 GAPVILI 86 (131)
T ss_dssp TSEEEEE
T ss_pred CCeEEEE
Confidence 8765543
No 153
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=55.68 E-value=1.2e+02 Score=28.12 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=60.2
Q ss_pred hhhhhhhhhccCCCCEEEEEC--CCCHHHHHHHHHHhCCceeceEEeecCCCceE------EEeccCcCCCcEEEEecCC
Q 020556 84 TARMEKTVNRTTNNRIKLFSG--TANPALSQEIACYMGVELGKINIKRFADGEIY------VQLQESVRGCDVYLVQPTC 155 (324)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Ifsg--ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~------V~i~esVrG~dV~IVqS~~ 155 (324)
+..+.+-.|+..+..+-++-| .+.-.||..+|..||.++.-..-+++-.-|-. =+--.+|.||+++||...-
T Consensus 72 s~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvi 151 (203)
T COG0856 72 SEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVI 151 (203)
T ss_pred HHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeecccccccCceEEEEeccc
Confidence 334444334443444444433 45568999999999999887776666544321 1112478899999997653
Q ss_pred CCchhhHHHHHHHHHHHHhcCCCeEEE
Q 020556 156 PPANENLMELLIMIDACRRASAKNITA 182 (324)
Q Consensus 156 ~p~nd~LmELLl~idAlr~agAkrItl 182 (324)
. .-..++|. +..+|+.|+|-+.+
T Consensus 152 t-tG~Ti~E~---Ie~lke~g~kpv~v 174 (203)
T COG0856 152 T-TGSTIKET---IEQLKEEGGKPVLV 174 (203)
T ss_pred c-cChhHHHH---HHHHHHcCCCcEEE
Confidence 2 24667764 67889999875443
No 154
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=55.59 E-value=87 Score=32.37 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHhCCceeceE--Eeec--CCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEE
Q 020556 107 NPALSQEIACYMGVELGKIN--IKRF--ADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITA 182 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~i~--~~rF--pDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItl 182 (324)
|--.|..+|..||+++.++. +..| ..|-...... +.++.||...+ |-+.--+.-.++++...-.++.++
T Consensus 287 NalaA~a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~~----~~g~~iIdD~Y---NAnp~sm~aai~~l~~~~~~~~i~ 359 (451)
T COG0770 287 NALAAAALALELGLDLEEIAAGLKELKPVKGRLEVILL----ANGKTLIDDSY---NANPDSMRAALDLLAALPGRKGIA 359 (451)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCCCccceeEec----CCCcEEEEcCC---CCCHHHHHHHHHHHhhCccCCcEE
Confidence 44678889999999887665 3333 3332332222 34545555544 344444566677777776666578
Q ss_pred EEcCCCcccccccccCC-cchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeE
Q 020556 183 VIPYFGYARADRKTQGR-ESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLV 261 (324)
Q Consensus 183 ViPYlpYaRQDR~~~~g-episak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~v 261 (324)
|++=|. ..+. +.--=+.+++-+...|+|+++.+--++..+...+.....+....+.+.++|.... ...+.|
T Consensus 360 VlGdM~-------ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~~~~~~~f~~~~~l~~~l~~~l-~~gd~v 431 (451)
T COG0770 360 VLGDML-------ELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEALGNKGIYFADKEELITSLKALL-RKGDVV 431 (451)
T ss_pred EeCChh-------hhCccHHHHHHHHHHHHHhcCceEEEEEccchHHHHHhcCCCeEecCCHHHHHHHHHHhc-CCCCEE
Confidence 887663 1211 2333445777777788999999988877776666544556666667777777643 334555
Q ss_pred EEeCC
Q 020556 262 VVSPD 266 (324)
Q Consensus 262 VVsPD 266 (324)
+|-=.
T Consensus 432 LvKgS 436 (451)
T COG0770 432 LVKGS 436 (451)
T ss_pred EEEcC
Confidence 55433
No 155
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=54.31 E-value=1.5e+02 Score=29.51 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
|..+++|.|......+.|+++.. ..++ .++ .-...|....-||.+++++++..|+..|++. +.++.
T Consensus 32 g~~~vvV~sg~~~~t~~l~~~~~--~~~~----~~~-------~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a-~~l~~ 97 (401)
T TIGR00656 32 GHKVVVVVSAMSGVTDALVEISE--KAIR----DAI-------TPRERDELVSHGERLSSALFSGALRDLGVKA-IWLDG 97 (401)
T ss_pred CCCEEEEEeCCCCChHHHHHHHH--HHhc----cCC-------ChHHHHHHhhHHHHHHHHHHHHHHHhCCCce-EEecc
Confidence 66788999887777777766543 1111 011 0111244445699999999999999999763 44443
Q ss_pred Cchhcc--ccc-CCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCC--------------chHHHHHHHHHcCCCCEEE
Q 020556 225 HSGQSM--GYF-DIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVG--------------GVARARAFAKKLSDAPLAI 287 (324)
Q Consensus 225 Hs~~~~--~fF-~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~G--------------a~kRA~~~A~~L~~~~~~~ 287 (324)
....+. +.| +..+........+.+++.+ ....|++++.| +=.-|..+|..|+ ++..+
T Consensus 98 ~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~-----~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~-A~~l~ 171 (401)
T TIGR00656 98 GEAGIITDDNFGNAKIDIIATEERLLPLLEE-----GIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALK-ADRVD 171 (401)
T ss_pred ccceEEeCCCCCceEeeecchHHHHHHHHhC-----CCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcC-CCEEE
Confidence 332111 112 2223333333455555543 34566766432 3445667788886 45443
No 156
>PRK05568 flavodoxin; Provisional
Probab=54.08 E-value=1.2e+02 Score=25.06 Aligned_cols=99 Identities=16% Similarity=0.285 Sum_probs=50.8
Q ss_pred EECCC-CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHH---HHHHHHHHHHh-cC
Q 020556 102 FSGTA-NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLM---ELLIMIDACRR-AS 176 (324)
Q Consensus 102 fsgss-~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~Lm---ELLl~idAlr~-ag 176 (324)
+|++. ...+|+.|++.++-.-.++++....+-.. .++.+.|.+++.+-.. +..++ .+.-+++.++. ..
T Consensus 9 ~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~-----~~~~~~d~iilgsp~y--~~~~~~~~~~~~f~~~~~~~~~ 81 (142)
T PRK05568 9 WSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASV-----DDVKGADVVALGSPAM--GDEVLEEGEMEPFVESISSLVK 81 (142)
T ss_pred ECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCH-----HHHHhCCEEEEECCcc--CcccccchhHHHHHHHhhhhhC
Confidence 34444 34889999998753323445555544221 2566778888776322 12111 22233344432 23
Q ss_pred CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCC
Q 020556 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGAD 217 (324)
Q Consensus 177 AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d 217 (324)
.|.+.++--| +++- .-..+.+++.|+..|++
T Consensus 82 ~k~~~~f~t~-G~~~---------~~~~~~~~~~l~~~g~~ 112 (142)
T PRK05568 82 GKKLVLFGSY-GWGD---------GEWMRDWVERMEGYGAN 112 (142)
T ss_pred CCEEEEEEcc-CCCC---------ChHHHHHHHHHHHCCCE
Confidence 3455444443 5421 12467788888887753
No 157
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=53.37 E-value=7.8 Score=39.50 Aligned_cols=134 Identities=25% Similarity=0.291 Sum_probs=69.5
Q ss_pred EEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCc--hhccc-----ccCCccceeeehHH------HH
Q 020556 181 TAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS--GQSMG-----YFDIPVDHVYCQPV------IL 247 (324)
Q Consensus 181 tlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs--~~~~~-----fF~ipv~nL~~~~~------l~ 247 (324)
+.+++-++ +|.+|..+|||.+-. ...|.+.+-.+.--. +..+. ||.-|-..+..+.. ..
T Consensus 210 Sc~f~~i~-a~y~Rev~PGEiV~i-------~r~g~~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY~~R~~~G 281 (474)
T KOG0572|consen 210 SCAFLSIG-ARYEREVRPGEIVEI-------SRNGVKSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCG 281 (474)
T ss_pred ceeeeecc-cEEEEeecCceEEEE-------ecCCceeeeeecCCccccccceeeeEEEeccCCceecccchHHHHHHHH
Confidence 34556665 477888889988743 233444433333221 22222 45444333333322 22
Q ss_pred HHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEE-EEEeEeCCC------C------ce--eEEEeeeecCCCeE
Q 020556 248 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA-IVDKRRHGH------N------VA--EVMNLIGDVKGKVA 312 (324)
Q Consensus 248 ~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~-~~~K~R~~~------~------~~--e~~~lvGDVkGk~v 312 (324)
+.|....+..-|.|+-=||.| ..-|-.+|.+.| .|+. .+-|.|--. + .+ +.-.+..+++||++
T Consensus 282 ~~LA~e~P~d~DvVi~VPdS~-~~aAlgyA~~sG-~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrv 359 (474)
T KOG0572|consen 282 EQLATEAPVDADVVIPVPDSG-TTAALGYAAKSG-LPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRV 359 (474)
T ss_pred hHhhhcCCcccceEEecCCch-hHHHHHHHHHhC-CchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceE
Confidence 223322222235555567776 455778888886 6764 233444211 1 00 11134557999999
Q ss_pred EEEecccccCCC
Q 020556 313 VMVDDMIDTAGW 324 (324)
Q Consensus 313 IIVDDIIdTGGs 324 (324)
+||||-|=-|.+
T Consensus 360 vlVDDSIVRGtT 371 (474)
T KOG0572|consen 360 VLVDDSIVRGTT 371 (474)
T ss_pred EEEecceeccCc
Confidence 999998866643
No 158
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=53.34 E-value=60 Score=29.43 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEE
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlVi 184 (324)
...-.||..+|..||+++.-+.-..=.-|+-......-.+|+.|+||...-.. -. -++-+++++|++|+ .|..++
T Consensus 82 ~~GiplA~~vA~~l~~p~v~vRK~~k~~g~~~~~~g~~~~g~rVlIVDDVitT-Gg---S~~~~i~~l~~~Ga-~V~~v~ 156 (187)
T PRK13810 82 LGGVPLATAVSLETGLPLLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTS-GG---SVREAIEVVREAGA-YIKYVI 156 (187)
T ss_pred cchHHHHHHHHHHhCCCEEEEecCCCccCCCceEEccCCCcCEEEEEEeccCC-Ch---HHHHHHHHHHHCCC-EEEEEE
Confidence 44568999999999998765443322224433322223478999998654321 12 24556788899997 555555
Q ss_pred cCCC
Q 020556 185 PYFG 188 (324)
Q Consensus 185 PYlp 188 (324)
-.+-
T Consensus 157 vlvd 160 (187)
T PRK13810 157 TVVD 160 (187)
T ss_pred EEEE
Confidence 5553
No 159
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=53.33 E-value=24 Score=28.96 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=41.6
Q ss_pred ECCCCH-HHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEE
Q 020556 103 SGTANP-ALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNIT 181 (324)
Q Consensus 103 sgss~~-~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrIt 181 (324)
.|..+. ..|......|. ++......-+.+.|..-.....+...|++|+=|.+.. +. |++-.++.+|+.|++-|
T Consensus 5 ~G~G~S~~~A~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~-t~---~~~~~~~~a~~~g~~vi- 78 (120)
T cd05710 5 VGCGGSLADMYPAKYFLK-KESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGN-TK---ETVAAAKFAKEKGATVI- 78 (120)
T ss_pred EEecHHHHHHhHHHHHHH-HhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCC-Ch---HHHHHHHHHHHcCCeEE-
Confidence 344433 33333333333 2334445566676655444445555688888776543 34 44566777888888544
Q ss_pred EEE
Q 020556 182 AVI 184 (324)
Q Consensus 182 lVi 184 (324)
++-
T Consensus 79 ~iT 81 (120)
T cd05710 79 GLT 81 (120)
T ss_pred EEE
Confidence 443
No 160
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=53.04 E-value=79 Score=27.98 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCC-------chHHHH
Q 020556 202 IAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVG-------GVARAR 274 (324)
Q Consensus 202 isak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~G-------a~kRA~ 274 (324)
.+...=.++|+..|+|.|+.++ |+-.+.++++...+-+++.+. .-+.+||+-|.. ....-+
T Consensus 56 ~~~e~R~~~l~~l~vd~v~~~~---------f~~~~~~~s~~~Fi~~il~~~---~~~~ivvG~Df~FG~~~~g~~~~L~ 123 (180)
T cd02064 56 TTLEEKLELLESLGVDYLLVLP---------FDKEFASLSAEEFVEDLLVKL---NAKHVVVGFDFRFGKGRSGDAELLK 123 (180)
T ss_pred CCHHHHHHHHHHcCCCEEEEeC---------CCHHHHcCCHHHHHHHHHhhc---CCeEEEEccCCCCCCCCCCCHHHHH
Confidence 5667788999999999999986 443344566666655566442 246689999883 455556
Q ss_pred HHHHHcCCCCEEEEEeEe
Q 020556 275 AFAKKLSDAPLAIVDKRR 292 (324)
Q Consensus 275 ~~A~~L~~~~~~~~~K~R 292 (324)
.+++..| ..+.+++...
T Consensus 124 ~~~~~~g-~~v~~v~~~~ 140 (180)
T cd02064 124 ELGKKYG-FEVTVVPPVT 140 (180)
T ss_pred HhhhhcC-cEEEEeCcEe
Confidence 6667665 5667666543
No 161
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=53.03 E-value=32 Score=32.20 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=49.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEE----EeeeecCCCeEEEEecccccCCC
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVM----NLIGDVKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~----~lvGDVkGk~vIIVDDIIdTGGs 324 (324)
++.++|+==-.|.-..+.+.+.+..+.+..+-=+|+..+. +.. .+--|.++|++||+|=|.-||||
T Consensus 70 ~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~-~p~~yy~KLP~~~~~~~viv~DPMLATG~s 139 (210)
T COG0035 70 KKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETL-EPVLYYEKLPEDIDERTVIVLDPMLATGGS 139 (210)
T ss_pred CcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccC-ceehhHHhCCCcccCCeEEEECchhhccHh
Confidence 3467777666777778888887776778888888986542 221 23337999999999999999997
No 162
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.98 E-value=1e+02 Score=31.02 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
..|-.+|..+|++...+. +..|.--+-+.++-... +.+.+|... .+ .|.-.++-.++++. ..+++++|+--
T Consensus 275 laAia~a~~lGi~~~~i~~~L~~f~g~~~R~e~v~~~--~g~~~idDs-~~--tn~~s~~~Al~~~~--~~~~~i~IlGg 347 (438)
T PRK04663 275 LVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADN--HGIKWVNDS-KA--TNVASTLAALSGLE--IEGKLYLLVGG 347 (438)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEeeee--CCcEEEeCC-Cc--CCHHHHHHHHHhcc--cCCcEEEEECC
Confidence 556777888898877665 57777666666654332 356555432 22 34444343333332 12478888873
Q ss_pred CCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCC
Q 020556 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPD 266 (324)
Q Consensus 187 lpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD 266 (324)
+ + ++..+ ..+++.+.... ..|+++-.+...+...... +......+.+.+++.+.. ...+.|+++|-
T Consensus 348 ~-----~----~~~~~--~~l~~~~~~~~-~~vi~~G~~~~~~~~~~~~-~~~~~~~e~av~~~~~~~-~~gd~VLlsp~ 413 (438)
T PRK04663 348 V-----G----KGADF--SPLKPVLATLN-LQLCCFGEDGDQFMPLHPS-ARRFDTMEDAIESISPQL-KSGDMVMLSPA 413 (438)
T ss_pred c-----c----CCCCH--HHHHHHHHhhC-cEEEEECCCHHHHHHHhcc-CeecCCHHHHHHHHHHhC-CCCCEEEECcc
Confidence 2 1 12223 35666666554 5899988877554432211 111112445556665422 35678999998
Q ss_pred CCchHHHHHHH
Q 020556 267 VGGVARARAFA 277 (324)
Q Consensus 267 ~Ga~kRA~~~A 277 (324)
.-+...-+.|.
T Consensus 414 ~as~d~f~~~~ 424 (438)
T PRK04663 414 CASFDQFKNFM 424 (438)
T ss_pred cccccCcCCHH
Confidence 66555544443
No 163
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=52.64 E-value=1e+02 Score=30.39 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=60.4
Q ss_pred EEEEcCCCcccccccccCCc----chhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCC
Q 020556 181 TAVIPYFGYARADRKTQGRE----SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS 256 (324)
Q Consensus 181 tlViPYlpYaRQDR~~~~ge----pisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~ 256 (324)
++|+-+=|+-|. .+.+.. -.+.+.=+++|...|+|.++.++ |+..+.++++.+.+..++...
T Consensus 49 ~~VitF~p~P~~--~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~---------F~~~fa~ls~~~Fv~~lv~~l--- 114 (304)
T COG0196 49 VVVITFEPHPRE--LLKPDKPPTRLTPLREKIRLLAGYGVDALVVLD---------FDLEFANLSAEEFVELLVEKL--- 114 (304)
T ss_pred eEEEEecCCCHH--HcCCCCCccccCCHHHHHHHHHhcCCcEEEEEe---------CCHhHhhCCHHHHHHHHHhcc---
Confidence 455555444442 222222 45577788999999999999998 555666788777666444332
Q ss_pred CCCeEEEeCCC-------CchHHHHHHHHHcCCCCEEEEEeEeC
Q 020556 257 SNDLVVVSPDV-------GGVARARAFAKKLSDAPLAIVDKRRH 293 (324)
Q Consensus 257 ~~~~vVVsPD~-------Ga~kRA~~~A~~L~~~~~~~~~K~R~ 293 (324)
.-.-+||+-|. |....-+.+++. | ..+..+.+.+.
T Consensus 115 ~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-g-f~v~~v~~~~~ 156 (304)
T COG0196 115 NVKHIVVGFDFRFGKGRQGNAELLRELGQK-G-FEVTIVPKINE 156 (304)
T ss_pred CCcEEEEecccccCCCCCCCHHHHHHhccC-C-ceEEEeccEec
Confidence 23458888884 444444455444 3 56667766664
No 164
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=52.57 E-value=21 Score=34.35 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=45.6
Q ss_pred ccCCCCEEEEECCCCHHHHH-HH-HHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEE--ecCCCCchhhHHHHHHH
Q 020556 93 RTTNNRIKLFSGTANPALSQ-EI-ACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV--QPTCPPANENLMELLIM 168 (324)
Q Consensus 93 ~~~~~~~~Ifsgss~~~LA~-~I-a~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IV--qS~~~p~nd~LmELLl~ 168 (324)
.|++..+-|+.||.--.|++ .+ -...-++.++ |-|++.+ ..+.|++|+++ |.-.+...-.-+..-.-
T Consensus 2 ~~~~p~igII~GSGl~~l~~~~~~~~~~~tpyg~------~sg~l~~---G~l~g~~v~~l~RhGr~H~ye~~~i~~ran 72 (264)
T PRK07823 2 HNNGAMLGVIGGSGFYSFFGSDAREVNVDTPYGP------PSAPITI---GEVGGRRVAFLPRHGRDHEFSPHTVPYRAN 72 (264)
T ss_pred CCCCceEEEEeccccchhhcccceeeEEeccCCC------CCCCEEE---EEECCEEEEEEeCCCCCCCcCCCCccchHH
Confidence 34567888999988655543 11 1111122222 2344433 34568899988 54322111112445666
Q ss_pred HHHHHhcCCCeEEE
Q 020556 169 IDACRRASAKNITA 182 (324)
Q Consensus 169 idAlr~agAkrItl 182 (324)
+.|+|.+|++.|.+
T Consensus 73 i~alk~lGv~~ii~ 86 (264)
T PRK07823 73 MWALRALGVRRVFA 86 (264)
T ss_pred HHHHHHcCCCEEEE
Confidence 78999999998875
No 165
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=52.52 E-value=1e+02 Score=31.28 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
..|-.+|..||++...+. +..|..=+-+.++-.. +..+.||...+ |.+--.+--.++++++...++ ++|+.=
T Consensus 288 laAia~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~--~~g~~iIDDsY---n~nP~s~~aaL~~l~~~~~r~-i~VlG~ 361 (453)
T PRK10773 288 LAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQL--AEGQLLLDDSY---NANVGSMTAAAQVLAEMPGYR-VMVVGD 361 (453)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeEEEC--CCCeEEEEcCC---CCCHHHHHHHHHHHHhCCCCE-EEEECC
Confidence 456667788898877665 6677533333332211 12356666433 222234455566777653345 466643
Q ss_pred CCc--ccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc
Q 020556 187 FGY--ARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 187 lpY--aRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~ 253 (324)
|+= .+.++ --+.+++.+...++|.|+++..+......... .-..+.....+.++|...
T Consensus 362 m~elG~~~~~--------~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 421 (453)
T PRK10773 362 MAELGAESEA--------CHRQVGEAAKAAGIDKVLSVGKLSHAISEASG-VGEHFADKTALIARLKAL 421 (453)
T ss_pred hhhcchHHHH--------HHHHHHHHHHHcCCCEEEEEChhHHHHHHhcC-CCeeECCHHHHHHHHHHh
Confidence 321 11111 12457777888899999999865433222110 001233345666676654
No 166
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.34 E-value=1.1e+02 Score=30.57 Aligned_cols=149 Identities=10% Similarity=0.126 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
.+|-.+|..||++...+. +..|.--+-+.++-... ..+.+|... .+.|-+-|+ .|++.. .+++++|+-=
T Consensus 281 laAia~a~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~--~~~~~iDDs-~~~n~~s~~-----~al~~~-~~~~i~IlGg 351 (445)
T PRK04308 281 MAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEK--NGVVFIDDS-KGTNVGATA-----AAIAGL-QNPLFVILGG 351 (445)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEee--CCeEEEEcC-CCCCHHHHH-----HHHHhC-CCCEEEEeCC
Confidence 667788888898766554 56664433344433222 234555432 233433222 123332 2357777741
Q ss_pred CCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhccccc---CCccceeeehHHHHHHHHhcCCCCCCeEEE
Q 020556 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (324)
Q Consensus 187 lpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF---~ipv~nL~~~~~l~~yl~~~~~~~~~~vVV 263 (324)
+ .++. ..+. +.+.+.. .+|.|+++..+...+...+ +.++..........+++.+. ....+.|++
T Consensus 352 ~---~~~~------~~~~--~~~~l~~-~~~~vil~G~~~~~l~~~l~~~~~~~~~~~~~e~a~~~~~~~-~~~~d~VL~ 418 (445)
T PRK04308 352 M---GKGQ------DFTP--LRDALAG-KAKGVFLIGVDAPQIRRDLDGCGLNLTDCATLEEAVQRAYAQ-AEAGDIVLL 418 (445)
T ss_pred C---CCCC------CHHH--HHHHHHH-hCcEEEEECCCHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-CCCCCEEEE
Confidence 1 1221 1211 3344443 3699999998876554322 22222222334455555443 234678999
Q ss_pred eCCCCchHHHHHHHHH
Q 020556 264 SPDVGGVARARAFAKK 279 (324)
Q Consensus 264 sPD~Ga~kRA~~~A~~ 279 (324)
+|..++...-+.|+++
T Consensus 419 sp~~~S~d~f~~~~~R 434 (445)
T PRK04308 419 SPACASFDMFKGYAHR 434 (445)
T ss_pred ChhhhhhccccCHHHH
Confidence 9999999887777753
No 167
>PRK06756 flavodoxin; Provisional
Probab=50.41 E-value=1e+02 Score=25.93 Aligned_cols=108 Identities=14% Similarity=0.201 Sum_probs=51.1
Q ss_pred EEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCC---CchhhHHHHHHHHHHH
Q 020556 99 IKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP---PANENLMELLIMIDAC 172 (324)
Q Consensus 99 ~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~---p~nd~LmELLl~idAl 172 (324)
+.|+.+|. ...+|+.|++.+.-.-.++++....+-. ...++.+.|.+++.+-.. ...+++.++ ++.+
T Consensus 4 v~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~----~~~~~~~~d~vi~gspt~~~g~~p~~~~~f---l~~l 76 (148)
T PRK06756 4 LVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSP----EASILEQYDGIILGAYTWGDGDLPDDFLDF---YDAM 76 (148)
T ss_pred EEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccC----CHHHHhcCCeEEEEeCCCCCCCCcHHHHHH---HHHH
Confidence 44554433 3488999999885322233333322211 023455678777765221 122344444 3334
Q ss_pred HhcCC-CeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeE
Q 020556 173 RRASA-KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRV 219 (324)
Q Consensus 173 r~agA-krItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~V 219 (324)
++... .+..++ +.-.|... +.-.-+.+.+.+.|+..|+..|
T Consensus 77 ~~~~l~~k~~~~-----fgt~~~~y-~~~~~a~~~l~~~l~~~g~~~v 118 (148)
T PRK06756 77 DSIDLTGKKAAV-----FGSCDSAY-PKYGVAVDILIEKLQERGAAVV 118 (148)
T ss_pred hcCCCCCCEEEE-----EeCCCCch-HHHHHHHHHHHHHHHHCCCEEc
Confidence 33221 222222 22222211 1122346888899998886443
No 168
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=49.90 E-value=83 Score=33.10 Aligned_cols=113 Identities=25% Similarity=0.334 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHhCCceeceEEee------c--CC---C--ceEEEe---ccCcCCCcEEEEecCCCCchhhHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKR------F--AD---G--EIYVQL---QESVRGCDVYLVQPTCPPANENLMELLIM 168 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~r------F--pD---G--E~~V~i---~esVrG~dV~IVqS~~~p~nd~LmELLl~ 168 (324)
.+....|..+|+.+|++....-++. | |. . ..++++ .+.+.||.|+||...... -.- +.-+
T Consensus 311 ~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~itt--G~T--~~~~ 386 (510)
T PRK07847 311 ESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVR--GNT--QRAL 386 (510)
T ss_pred CchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCc--hHH--HHHH
Confidence 3456889999999999976543331 1 12 1 223332 345789999998654321 122 3467
Q ss_pred HHHHHhcCCCeEEEEE--c------CCCcccccccccCCcchhHH-HHHHHHHHhCCCeEEEEcCC
Q 020556 169 IDACRRASAKNITAVI--P------YFGYARADRKTQGRESIAAK-LVANLITEAGADRVLACDLH 225 (324)
Q Consensus 169 idAlr~agAkrItlVi--P------YlpYaRQDR~~~~gepisak-~vA~lL~~~G~d~VitvDlH 225 (324)
+..||++||++|.+-| | |||-.-.+|. |-|+++ .+-++=+..|+|.+.-+.+-
T Consensus 387 ~~~L~~~ga~~v~~ri~sPpi~~pc~yGid~~~~~----eLia~~~~~eei~~~igadsl~yls~e 448 (510)
T PRK07847 387 VRMLREAGAAEVHVRISSPPVKWPCFYGIDFASRA----ELIANGLTVEEIRRSIGADSLGYISLD 448 (510)
T ss_pred HHHHHHcCCCEEEEEECCCCcCCCCcCcCCCCCHH----HHHhcCCCHHHHHHHhCCCeEeccCHH
Confidence 8899999999999877 2 3332222222 222211 12334445677887766543
No 169
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=47.56 E-value=3.3 Score=39.26 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEE
Q 020556 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (324)
Q Consensus 159 nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vi 220 (324)
+-+|+|.||-.+ ..-.-=||+||=|.|+...++.|-|.+.++..|..||+|.++
T Consensus 53 ~~~li~~lL~~~--------lfPikdsYvayLkrdksAlernP~Ti~ri~g~l~emGl~~i~ 106 (261)
T PF06300_consen 53 STKLIKSLLNLD--------LFPIKDSYVAYLKRDKSALERNPETINRICGRLYEMGLDKIY 106 (261)
T ss_pred hHHHHHHHHhcc--------cCccCcchHHHHHhhHHHHhcCcHHHHHHHHHHHHHhHHHHH
Confidence 566777666522 111233899999999999999999999999999999987764
No 170
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=46.26 E-value=2.2e+02 Score=27.63 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCC-------CchHHH
Q 020556 201 SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV-------GGVARA 273 (324)
Q Consensus 201 pisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~-------Ga~kRA 273 (324)
-.+.+.=.++|+.+|+|.++.++ |+-.+.++++...+-+++.++. .-.-+||+.|. |.+..-
T Consensus 53 l~~~~~k~~~l~~~Gvd~~~~~~---------F~~~~a~ls~e~Fi~~~l~~~l--~~~~ivvG~Df~FG~~~~G~~~~L 121 (288)
T TIGR00083 53 LTPLEDKARQLQIKGVEQLLVVV---------FDEEFANLSALQFIDQLIVKHL--HVKFLVVGDDFRFGHDRQGDFLLL 121 (288)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeC---------CCHHHHcCCHHHHHHHHHHhcc--CCcEEEECCCccCCCCCCCCHHHH
Confidence 44567778899999999999998 5544557777666666665431 23568999997 677777
Q ss_pred HHHHHHcCCCCEEEEEeE
Q 020556 274 RAFAKKLSDAPLAIVDKR 291 (324)
Q Consensus 274 ~~~A~~L~~~~~~~~~K~ 291 (324)
+.+++..| ..+.+++..
T Consensus 122 ~~~~~~~g-~~v~~~~~~ 138 (288)
T TIGR00083 122 QLFGNTTI-FCVIVKQLF 138 (288)
T ss_pred HHhccccC-cEEEEeccc
Confidence 77777665 444444443
No 171
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=45.25 E-value=89 Score=31.11 Aligned_cols=148 Identities=15% Similarity=0.209 Sum_probs=76.6
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
..|-.+|..||++...+. +..|..-+-+.++-....|. .+|..+. +.|-+ .++-.+++++ +++++|+-
T Consensus 270 ~aAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~g~-~~idD~~--atn~~--a~~~al~~~~----~~ii~I~G- 339 (433)
T TIGR01087 270 LAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGV-HFYNDSK--ATNVH--ATLAALSAFD----NPVILIVG- 339 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCE-EEEEcCC--CCCHH--HHHHHHHhCC----CCEEEEEc-
Confidence 567778888898766555 66776555555543332221 2444433 22222 2233333332 36777773
Q ss_pred CCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhccccc---CCccceeeehHHHHHHHHhcCCCCCCeEEE
Q 020556 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (324)
Q Consensus 187 lpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF---~ipv~nL~~~~~l~~yl~~~~~~~~~~vVV 263 (324)
+ +|+. + .+ .-+++.|... .+.|+++..+...+...+ +.++........+.+++.+.. ...+.|++
T Consensus 340 -g---~~~~---~-d~--~~~~~~l~~~-~~~v~~~G~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gdiVLl 407 (433)
T TIGR01087 340 -G---DDKG---A-DF--SPLAPAAAGK-VKAVLAIGEDAAKIAPLLKEAGLSVYLVESLEEAVQAAREVA-SPGDVVLL 407 (433)
T ss_pred -C---CCCC---C-CH--HHHHHHHHhh-CCEEEEECCCHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHhc-CCCCEEEE
Confidence 1 1211 1 11 2245566543 678998877765544333 122222223455555554422 34578999
Q ss_pred eCCCCchHHHHHHHH
Q 020556 264 SPDVGGVARARAFAK 278 (324)
Q Consensus 264 sPD~Ga~kRA~~~A~ 278 (324)
+|..-+...-+.|.+
T Consensus 408 spa~as~d~f~~~~~ 422 (433)
T TIGR01087 408 SPACASFDQFKSYEE 422 (433)
T ss_pred CccchhhccccCHHH
Confidence 998877666555543
No 172
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.96 E-value=67 Score=32.54 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=78.1
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcC
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPY 186 (324)
-.|-.+|..+ +++..+. +..|.--+-+.++-....| +.+|.... |.+--+++-.++++. +++++|+.-
T Consensus 289 laA~a~a~~~-i~~~~i~~~L~~f~~~~~R~e~~~~~~g--~~~i~Dsy---~~np~s~~~al~~~~----~~~i~IlGg 358 (458)
T PRK01710 289 LAAFCAVNDD-VSIESMKKVATTFSGVEHRCEFVREING--VKYYNDSI---ASSPTRTLAGLKAFE----KPVILIAGG 358 (458)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHhCCCCCcceEEEEEECC--EEEecccc---cCCHHHHHHHHHhCC----CCEEEEeCC
Confidence 3444455544 6655544 5677766666665433333 43344322 122334343344442 257788762
Q ss_pred CCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhccccc---------CCccceeeehHHHHHHHHhcCCCC
Q 020556 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---------DIPVDHVYCQPVILDYLASKTVSS 257 (324)
Q Consensus 187 lpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF---------~ipv~nL~~~~~l~~yl~~~~~~~ 257 (324)
.|+ ++ .-..+++.+.. +++.|+++--+...+..-+ +.++......+.+.+++.+.. ..
T Consensus 359 -----~~~----~~--~~~~l~~~~~~-~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~ 425 (458)
T PRK01710 359 -----YDK----KI--PFEPLAEEGYE-KIKTLILMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIA-EK 425 (458)
T ss_pred -----cCC----CC--CHHHHHHHHHh-hccEEEEECCCHHHHHHHHhhcccccCCCcceEEcCCHHHHHHHHHHhC-CC
Confidence 222 11 12234444443 5899999988765543211 123333333556666666542 45
Q ss_pred CCeEEEeCCCCchHHHHHHHH
Q 020556 258 NDLVVVSPDVGGVARARAFAK 278 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~ 278 (324)
.+.|++||..-+...-+.|.+
T Consensus 426 gd~VLlspa~aS~d~f~~~~~ 446 (458)
T PRK01710 426 GDIVTLSPACASFDMFPNFEI 446 (458)
T ss_pred CCEEEeChhhcccccccCHHH
Confidence 689999999888776666654
No 173
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=44.81 E-value=1.8e+02 Score=31.90 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=75.6
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCC-CeEEEEEc
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA-KNITAVIP 185 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agA-krItlViP 185 (324)
-.|-.+|..||++...+. +..|.-=+-+.++-... ..+.+|...+ |.+.-.+.-.++++++... +++++|+.
T Consensus 292 laAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~--~g~~vIdDSy---n~nP~s~~aaL~~l~~~~~~~~~ilIlG 366 (822)
T PRK11930 292 IHCIAVLLYLGYSADQIQERMARLEPVAMRLEVKEGI--NNCTLINDSY---NSDLQSLDIALDFLNRRSQSKKKTLILS 366 (822)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCeeEEEEcC--CCcEEEECCC---CCCHHHHHHHHHHHHhcccCCCEEEEEC
Confidence 456667788899877665 56665444444443322 2334443322 2233444555677766433 46778876
Q ss_pred CCCcccccccccCCcc--hhHHHHHHHHHHhCCCeEEEEcCCchhcccccC-CccceeeehHHHHHHHHhcCCCCCCeEE
Q 020556 186 YFGYARADRKTQGRES--IAAKLVANLITEAGADRVLACDLHSGQSMGYFD-IPVDHVYCQPVILDYLASKTVSSNDLVV 262 (324)
Q Consensus 186 YlpYaRQDR~~~~gep--isak~vA~lL~~~G~d~VitvDlHs~~~~~fF~-ipv~nL~~~~~l~~yl~~~~~~~~~~vV 262 (324)
=+. +.|+- ---+.+++.+...++++|+++.-+.......+. .++......+.+.+++.+.. ...+.|+
T Consensus 367 ~m~--------elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~-~~gDvVL 437 (822)
T PRK11930 367 DIL--------QSGQSPEELYRKVAQLISKRGIDRLIGIGEEISSEASKFEGTEKEFFKTTEAFLKSFAFLK-FRNELIL 437 (822)
T ss_pred ChH--------hcCchHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHhcCccccEEECCHHHHHHHHHHhc-CCCCEEE
Confidence 221 12321 112446677776789999999766543332232 23333344566777776543 3345554
Q ss_pred E
Q 020556 263 V 263 (324)
Q Consensus 263 V 263 (324)
+
T Consensus 438 l 438 (822)
T PRK11930 438 V 438 (822)
T ss_pred E
Confidence 4
No 174
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=44.49 E-value=72 Score=29.37 Aligned_cols=79 Identities=19% Similarity=0.100 Sum_probs=48.4
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCC
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agA 177 (324)
++.+++.-.+..+|+.++.+|-. +++. +.-+.|.|........+...|++|+=|.+.. +. |++-++..+|+.|+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~-~g~~-~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~-t~---~~~~~~~~a~~~g~ 75 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS-TGTP-SFFLHPTEAMHGDLGMVEPNDVVLMISYSGE-SL---ELLNLIPHLKRLSH 75 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh-cCCc-eEEeCHhHHhhcccCCCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHcCC
Confidence 45566655667788888877642 2222 2234555554433445666788888776543 34 45667788899998
Q ss_pred CeEEE
Q 020556 178 KNITA 182 (324)
Q Consensus 178 krItl 182 (324)
+-|.+
T Consensus 76 ~ii~i 80 (268)
T TIGR00393 76 KIIAF 80 (268)
T ss_pred cEEEE
Confidence 75543
No 175
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=44.17 E-value=9.8 Score=35.04 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=49.6
Q ss_pred eehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCc----eeE---------EEee-ee
Q 020556 241 YCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV----AEV---------MNLI-GD 306 (324)
Q Consensus 241 ~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~----~e~---------~~lv-GD 306 (324)
.+...|++.+.+.. ....++|+=-+.|...-..+++.++. ...|++-.|..-.. ++. ..+. .|
T Consensus 38 ~~~~~La~~~~~~~--~~~~lvIGfAETATgLG~~V~~~~~~-~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~~ 114 (191)
T PF15609_consen 38 DAGRLLAAQVPEAL--PGPVLVIGFAETATGLGHGVFDALGA-ACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPPD 114 (191)
T ss_pred HHHHHHHHHHHHhC--CCCeEEEEEhHHHHHHHHHHHHHhhh-ccceeeeccccCCCCccceeeeccccccccceecCCC
Confidence 33445555554432 35678888888888888888888864 33577777742211 111 0111 11
Q ss_pred ----cCCCeEEEEecccccCCC
Q 020556 307 ----VKGKVAVMVDDMIDTAGW 324 (324)
Q Consensus 307 ----VkGk~vIIVDDIIdTGGs 324 (324)
-..+.+|+|||-|+||.+
T Consensus 115 ~~~l~~~~~lVLVDDEiSTG~T 136 (191)
T PF15609_consen 115 PDLLRNARTLVLVDDEISTGNT 136 (191)
T ss_pred hHHhcCCCCEEEEecCccchHH
Confidence 346799999999999974
No 176
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=43.81 E-value=2.1e+02 Score=26.06 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=57.5
Q ss_pred CEEEEE-CCCCHHHHHHHHHHh-CCceeceEEeecCCC----ceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHH
Q 020556 98 RIKLFS-GTANPALSQEIACYM-GVELGKINIKRFADG----EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (324)
Q Consensus 98 ~~~Ifs-gss~~~LA~~Ia~~L-g~~l~~i~~~rFpDG----E~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idA 171 (324)
++.+++ ..+...|.+.+.+.+ +.+.+.+.+.+=++. +.|.++++++.++.|+++.++...-+. +...++.
T Consensus 68 ~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s----~~~ai~~ 143 (207)
T PF14681_consen 68 KICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGS----AIAAIEI 143 (207)
T ss_dssp CEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHH----HHHHHHH
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhh----HHHHHHH
Confidence 566555 577789999999998 478888888885543 478889999989999999876543222 3456777
Q ss_pred HHhcCC--CeEEE
Q 020556 172 CRRASA--KNITA 182 (324)
Q Consensus 172 lr~agA--krItl 182 (324)
+++.|+ ++|++
T Consensus 144 L~~~G~~~~~I~~ 156 (207)
T PF14681_consen 144 LKEHGVPEENIII 156 (207)
T ss_dssp HHHTTG-GGEEEE
T ss_pred HHHcCCCcceEEE
Confidence 888776 56654
No 177
>COG2403 Predicted GTPase [General function prediction only]
Probab=41.97 E-value=77 Score=32.55 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=34.2
Q ss_pred CCCCeEEEe----CCCCchHHHHHHHHHcCCCCEEEEEeEeCCCCceeEEEeeeecCCCeEEEEecc
Q 020556 256 SSNDLVVVS----PDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDM 318 (324)
Q Consensus 256 ~~~~~vVVs----PD~Ga~kRA~~~A~~L~~~~~~~~~K~R~~~~~~e~~~lvGDVkGk~vIIVDDI 318 (324)
.+-|.|||. |-.+.+.+....-++++ |-+-+.+.+..-. ....||++||+++.|.|=
T Consensus 268 rlAD~VIItkveea~~~kvrkI~~~I~~iN--P~A~Vi~~~~~~~----~~~~~~ieGKrvlvveda 328 (449)
T COG2403 268 RLADLVIITKVEEAMAEKVRKIVRNIEEIN--PKAEVILAASVFR----PDPPEDIEGKRVLVVEDA 328 (449)
T ss_pred eeccEEEEecccccchHHHHHHHHHHHhhC--CCcEEEecccccc----cCChhhcCCcEEEEEecC
Confidence 345677765 44455566666666675 4444444432110 134679999999999884
No 178
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=41.49 E-value=84 Score=28.99 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccc-cCC-cchhHHHHH-------HHHHHhCCCeEEEEcCCch
Q 020556 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKT-QGR-ESIAAKLVA-------NLITEAGADRVLACDLHSG 227 (324)
Q Consensus 159 nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~-~~g-episak~vA-------~lL~~~G~d~VitvDlHs~ 227 (324)
.|.++.-.+...++++.+. .+|+|=++|.=..-.. .+| -.++...+. +-|...||.+++.++=|-.
T Consensus 37 tD~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgG 111 (237)
T PF02633_consen 37 TDTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGG 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHh
Confidence 4888888899999999885 6899988887644432 133 234444433 3444579999999999965
No 179
>PRK08373 aspartate kinase; Validated
Probab=40.96 E-value=1.8e+02 Score=29.00 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=47.5
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHH-------------HHHhcCCCeEE---------EEEcCCCccc-ccccccCCcc
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMID-------------ACRRASAKNIT---------AVIPYFGYAR-ADRKTQGRES 201 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~id-------------Alr~agAkrIt---------lViPYlpYaR-QDR~~~~gep 201 (324)
|.++++|-|....+.|.|+++.-..+ .+++.+...-. --+..++-.| +|....-||-
T Consensus 32 ~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~ 111 (341)
T PRK08373 32 ENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGER 111 (341)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Confidence 45677777766667788887654321 11222110000 0012233333 4666667999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCC
Q 020556 202 IAAKLVANLITEAGADRVLACDLH 225 (324)
Q Consensus 202 isak~vA~lL~~~G~d~VitvDlH 225 (324)
+|+++++..|+..|++.. .+|.+
T Consensus 112 lSa~lla~~L~~~Gi~a~-~l~~~ 134 (341)
T PRK08373 112 LSAVLFAEALENEGIKGK-VVDPW 134 (341)
T ss_pred HHHHHHHHHHHHCCCceE-EEeHH
Confidence 999999999999998766 45554
No 180
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=38.78 E-value=1.4e+02 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=39.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCcee-ceEEeec---CCCceEEEeccCcCCCcEEEEecCCC
Q 020556 98 RIKLFSGTANPALSQEIACYMGVELG-KINIKRF---ADGEIYVQLQESVRGCDVYLVQPTCP 156 (324)
Q Consensus 98 ~~~Ifsgss~~~LA~~Ia~~Lg~~l~-~i~~~rF---pDGE~~V~i~esVrG~dV~IVqS~~~ 156 (324)
.+.|=-..+.--+|..++.+|+++.. .+.+..| ..|++.+.-....+|++|+||.....
T Consensus 33 d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~~~~~~gk~VLIVDDIiD 95 (156)
T PRK09177 33 KGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKRAEGDGEGFLVVDDLVD 95 (156)
T ss_pred CEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEecCCCcCcCEEEEEeeeeC
Confidence 45444456677899999999998853 3334344 33566665555678999999976643
No 181
>PRK09271 flavodoxin; Provisional
Probab=38.52 E-value=2.4e+02 Score=24.28 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=31.6
Q ss_pred EEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEec
Q 020556 99 IKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP 153 (324)
Q Consensus 99 ~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS 153 (324)
+.|+.+|. ...+|+.|++.|...-.++.+...++.++. .+..++...+++++.+
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~d~vilgt 59 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLA-EYPLDPEDYDLYLLGT 59 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccccccc-ccccCcccCCEEEEEC
Confidence 34555543 358999999998654445555555554421 1133444568887776
No 182
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.31 E-value=1.1e+02 Score=24.46 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=42.2
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCC
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAk 178 (324)
+.+++.-.+...|...+.+|..-. .....-++..|...... .+..+|++|+-|.+.. +. |++-+++.+|+.|++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~d~~I~iS~sG~-t~---e~~~~~~~a~~~g~~ 75 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLA-GIPVEVEAASEFRYRRP-LLDEDTLVIAISQSGE-TA---DTLAALRLAKEKGAK 75 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhc-CCceEEEehhHhhhcCC-CCCCCcEEEEEeCCcC-CH---HHHHHHHHHHHcCCe
Confidence 344543445556666666554322 11222233445443332 3556788888776543 23 567778889999985
Q ss_pred eEE
Q 020556 179 NIT 181 (324)
Q Consensus 179 rIt 181 (324)
-|.
T Consensus 76 vi~ 78 (126)
T cd05008 76 TVA 78 (126)
T ss_pred EEE
Confidence 443
No 183
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=38.23 E-value=1.8e+02 Score=30.38 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHhCCceeceEEe-e-----c--CCCc-----eEEEec---cCcCCCcEEEEecCCCCchhhHHHHHHHH
Q 020556 106 ANPALSQEIACYMGVELGKINIK-R-----F--ADGE-----IYVQLQ---ESVRGCDVYLVQPTCPPANENLMELLIMI 169 (324)
Q Consensus 106 s~~~LA~~Ia~~Lg~~l~~i~~~-r-----F--pDGE-----~~V~i~---esVrG~dV~IVqS~~~p~nd~LmELLl~i 169 (324)
+....|..+|+.+|+++...-++ + | +..+ .++++. +.+.|+.|+||...... -.- |--++
T Consensus 301 s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsitt--GtT--l~~~~ 376 (474)
T PRK06388 301 SGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVR--GNT--MRFIV 376 (474)
T ss_pred CcHHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECc--HHH--HHHHH
Confidence 34467999999999987542222 1 1 1212 233322 35678899888653221 222 23567
Q ss_pred HHHHhcCCCeEEEEE
Q 020556 170 DACRRASAKNITAVI 184 (324)
Q Consensus 170 dAlr~agAkrItlVi 184 (324)
++||++||+.|.+.|
T Consensus 377 ~~L~~aGak~V~~ri 391 (474)
T PRK06388 377 KIMRKYGAKEVHVRI 391 (474)
T ss_pred HHHHHcCCCEEEEEe
Confidence 888999999999877
No 184
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=37.99 E-value=18 Score=38.55 Aligned_cols=15 Identities=33% Similarity=0.270 Sum_probs=11.5
Q ss_pred CCCcCCCCCCCcccc
Q 020556 1 MASLTMPRPSQSTSA 15 (324)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (324)
||.-||.+|+|+.++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (573)
T PLN02640 1 MATHFMSPCSSSSTN 15 (573)
T ss_pred CCccccCccccccch
Confidence 788899888776644
No 185
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=37.85 E-value=85 Score=27.02 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEEc-------CCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccc
Q 020556 160 ENLMELLIMIDACRRASAKNITAVIP-------YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY 232 (324)
Q Consensus 160 d~LmELLl~idAlr~agAkrItlViP-------YlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~f 232 (324)
...=.|-++++.|++.|++-+.+++| |.|++++.|. .+ -+-|..+++..|+ + .+|+.+..-.-+
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~-----~~-y~kI~~~~~~~gf-~--v~D~s~~~y~~y 103 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ-----EY-YKKIKYQLKSQGF-N--VADFSDDEYEPY 103 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH-----HH-HHHHHHHHHTTT-----EEE-TTGTTSTT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH-----HH-HHHHHHHHHHCCC-E--EEecccCCCCCc
Confidence 45667899999999999987777777 5556665443 33 4457888888898 4 467777666655
Q ss_pred cCCccceeee
Q 020556 233 FDIPVDHVYC 242 (324)
Q Consensus 233 F~ipv~nL~~ 242 (324)
|=..+.||.-
T Consensus 104 fm~D~iHlgw 113 (130)
T PF04914_consen 104 FMQDTIHLGW 113 (130)
T ss_dssp SBSSSSSB-T
T ss_pred eeeecccCch
Confidence 5333445543
No 186
>PRK06031 phosphoribosyltransferase; Provisional
Probab=37.67 E-value=1.5e+02 Score=27.94 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHhCCc-eeceE-EeecC---------------CCceEEEec----cCcCCCcEEEEecCCCCchhhH
Q 020556 104 GTANPALSQEIACYMGVE-LGKIN-IKRFA---------------DGEIYVQLQ----ESVRGCDVYLVQPTCPPANENL 162 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~-l~~i~-~~rFp---------------DGE~~V~i~----esVrG~dV~IVqS~~~p~nd~L 162 (324)
-...-.||..+|.+||.. ...+. ..++. +......+. ..++|+.|+||...-.. -..
T Consensus 92 ~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitT-G~T- 169 (233)
T PRK06031 92 PTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISS-GAS- 169 (233)
T ss_pred ccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccc-cHH-
Confidence 355679999999999964 11111 11221 111122222 23689999998654321 122
Q ss_pred HHHHHHHHHHHhcCCCe
Q 020556 163 MELLIMIDACRRASAKN 179 (324)
Q Consensus 163 mELLl~idAlr~agAkr 179 (324)
+.-+++.++++|++-
T Consensus 170 --l~aa~~lL~~~Ga~V 184 (233)
T PRK06031 170 --IVAGLRLLAACGIEP 184 (233)
T ss_pred --HHHHHHHHHHcCCeE
Confidence 345567788999853
No 187
>PRK06703 flavodoxin; Provisional
Probab=37.45 E-value=2.5e+02 Score=23.61 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=50.2
Q ss_pred EEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEec-CCC--CchhhHHHHHHHHHHH
Q 020556 99 IKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP-TCP--PANENLMELLIMIDAC 172 (324)
Q Consensus 99 ~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS-~~~--p~nd~LmELLl~idAl 172 (324)
+.|+.+|. +..+|+.|++.++..-..+++....+-+ .+++.+.|.+++.+ +.. ...+++..++-.+..+
T Consensus 4 v~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-----~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~ 78 (151)
T PRK06703 4 ILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD-----AEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI 78 (151)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC-----HHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC
Confidence 44555443 4589999999885433334443332211 12354566666654 331 1123343333322221
Q ss_pred HhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCe
Q 020556 173 RRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 218 (324)
Q Consensus 173 r~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~ 218 (324)
....+.+ +++=.. .+. . +.-.-..+.+.++|+..|++.
T Consensus 79 -~l~~k~~-~vfg~g--~~~---y-~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 79 -DLSGKKV-AVFGSG--DTA---Y-PLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred -CCCCCEE-EEEccC--CCC---h-HHHHHHHHHHHHHHHHCCCEE
Confidence 1223343 343221 111 1 011234677999999999743
No 188
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=37.17 E-value=4.7e+02 Score=29.22 Aligned_cols=101 Identities=23% Similarity=0.251 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecC------CCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCC
Q 020556 107 NPALSQEIACYMGVELGKIN--IKRFA------DGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~i~--~~rFp------DGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAk 178 (324)
|-..|-.+|..||++...+. +.+|. .|=..+ - ...|.. +|+...+ |.. .+--++++++....+
T Consensus 687 NalaAiaaa~~lgi~~e~I~~gL~~F~~~~~~~pGR~e~--~-~~~g~~-vI~DyAH---NP~--a~~all~~l~~~~~~ 757 (864)
T TIGR02068 687 NALAAVAAAWALGVPIELIRAGIRTFDADAAQAPGRFNL--F-NLGGAH-VLVDYGH---NPA--AIEAVGAAIRNWPAR 757 (864)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccccccCCCCceEE--E-EeCCcE-EEEEcCC---CHH--HHHHHHHHHHhcCCC
Confidence 33556677777888876555 56664 343332 1 123434 4454322 222 223335666665556
Q ss_pred eEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCc
Q 020556 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS 226 (324)
Q Consensus 179 rItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs 226 (324)
+.++|+.=++ ||... ....+++++... +|+|++.+...
T Consensus 758 r~i~Vig~~g----dr~~~-----~~~~lg~~l~~~-~d~vil~~~~~ 795 (864)
T TIGR02068 758 RRIGVIGGPG----DRRDE-----DLVEQGELLGGA-FDQIILKEDDD 795 (864)
T ss_pred CEEEEECCCC----CCChh-----HHHHHHHHHHHh-CCEEEEEeCCC
Confidence 7778887664 33211 133456666643 89999887653
No 189
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=36.94 E-value=2e+02 Score=26.01 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhCCceeceEEe-ecC---------------CCceEEEeccC--cCCCcEEEEecCCCCchhhHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIK-RFA---------------DGEIYVQLQES--VRGCDVYLVQPTCPPANENLMELL 166 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~-rFp---------------DGE~~V~i~es--VrG~dV~IVqS~~~p~nd~LmELL 166 (324)
...-.||..+|.+||.++.-+.-. +.+ .+|-.+.+..+ -+|+.|+||...-.. -. -++
T Consensus 59 ~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaT-Gg---T~~ 134 (189)
T PRK09219 59 ASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLAN-GQ---AAL 134 (189)
T ss_pred cccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhc-Ch---HHH
Confidence 556799999999999987544332 122 12223333332 268899988643211 11 256
Q ss_pred HHHHHHHhcCCC
Q 020556 167 IMIDACRRASAK 178 (324)
Q Consensus 167 l~idAlr~agAk 178 (324)
-+++.++++|++
T Consensus 135 a~~~lv~~aGa~ 146 (189)
T PRK09219 135 GLIDIIEQAGAK 146 (189)
T ss_pred HHHHHHHHCCCE
Confidence 677889999984
No 190
>PRK15482 transcriptional regulator MurR; Provisional
Probab=36.80 E-value=73 Score=30.02 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=49.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.+++.|++...+..+|+.++.+|.. ++. .+.-+.|++........+...||+|+=|.+.. +. |++-+++.+++.
T Consensus 135 A~~I~i~G~G~S~~~A~~l~~~l~~-~g~-~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~-t~---~~~~~~~~a~~~ 208 (285)
T PRK15482 135 APFIQITGLGGSALVGRDLSFKLMK-IGY-RVACEADTHVQATVSQALKKGDVQIAISYSGS-KK---EIVLCAEAARKQ 208 (285)
T ss_pred CCeeEEEEeChhHHHHHHHHHHHHh-CCC-eeEEeccHhHHHHHHhcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHC
Confidence 3567788777777888888888642 221 22223455433223345556799988887543 34 455667778899
Q ss_pred CCCeEE
Q 020556 176 SAKNIT 181 (324)
Q Consensus 176 gAkrIt 181 (324)
|++-|.
T Consensus 209 g~~iI~ 214 (285)
T PRK15482 209 GATVIA 214 (285)
T ss_pred CCEEEE
Confidence 986554
No 191
>PRK09004 FMN-binding protein MioC; Provisional
Probab=36.75 E-value=2.3e+02 Score=24.25 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=53.7
Q ss_pred CEEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCc-EEEEecCCC--CchhhHHHHHHHHHH
Q 020556 98 RIKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCD-VYLVQPTCP--PANENLMELLIMIDA 171 (324)
Q Consensus 98 ~~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~d-V~IVqS~~~--p~nd~LmELLl~idA 171 (324)
++.|+.||. ...+|++|++.+.-.-..+.+. ...+ .+++...+ ++++.|++. ...++..+++ +.
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~--~~~~-----~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~---~~ 72 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETL--HGPL-----LDDLSASGLWLIVTSTHGAGDLPDNLQPFF---EE 72 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEe--ccCC-----HHHhccCCeEEEEECCCCCCCCChhHHHHH---HH
Confidence 477887766 4588888888874221122322 1111 23444445 556667651 1124444333 33
Q ss_pred HHhc----CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEE
Q 020556 172 CRRA----SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLAC 222 (324)
Q Consensus 172 lr~a----gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vitv 222 (324)
++.. .-+++ +|+- =-|+.. +.---.++.+-+.|+..|+.+|.-.
T Consensus 73 L~~~~~~l~g~~~-aVfG-----lGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~~ 120 (146)
T PRK09004 73 LQEQKPDLSQVRF-AAIG-----IGSSEY-DTFCGAIDKLEQLLKAKGAKQIGET 120 (146)
T ss_pred HHhcCCCCCCCEE-EEEe-----ecCCCH-HHHhHHHHHHHHHHHHcCCeEeecc
Confidence 3332 11222 2221 111211 1122347889999999999888643
No 192
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=36.42 E-value=2.3e+02 Score=22.92 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCchhcc-------cccCCccceeee---hHHHHHHHHhcCCCCCCeEEEeCCCCchH
Q 020556 202 IAAKLVANLITEAGADRVLACDLHSGQSM-------GYFDIPVDHVYC---QPVILDYLASKTVSSNDLVVVSPDVGGVA 271 (324)
Q Consensus 202 isak~vA~lL~~~G~d~VitvDlHs~~~~-------~fF~ipv~nL~~---~~~l~~yl~~~~~~~~~~vVVsPD~Ga~k 271 (324)
++.+.+.++|+.- +..+.+|+-+++.. +..++|..++.. ...+...+.......+..++++..-....
T Consensus 1 is~~el~~~l~~~--~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQAD--PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhC--CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 4667788888762 46889999975432 333455544331 12233444332212344556665533334
Q ss_pred HHHHHHHHcC
Q 020556 272 RARAFAKKLS 281 (324)
Q Consensus 272 RA~~~A~~L~ 281 (324)
++......+|
T Consensus 79 ~aa~~L~~~G 88 (117)
T cd01522 79 AAAEAAAQAG 88 (117)
T ss_pred HHHHHHHHCC
Confidence 4444444455
No 193
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=36.29 E-value=2.7e+02 Score=23.59 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCC-eEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCch
Q 020556 164 ELLIMIDACRRASAK-NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSG 227 (324)
Q Consensus 164 ELLl~idAlr~agAk-rItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~ 227 (324)
.+.-|++.+|+...+ .|.++.|.+....+.. +. ..+.+.++++..+-..|..+|.|..
T Consensus 82 ~~~~li~~i~~~~p~~~i~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~v~~id~~~~ 140 (169)
T cd01831 82 AYVEFIEELRKRYPDAPIVLMLGPMLFGPYGT-----EE-EIKRVAEAFKDQKSKKVHYFDTPGI 140 (169)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCcccccccc-----HH-HHHHHHHHHHhcCCceEEEEecccc
Confidence 577788888887654 4444444433222110 11 2345666777665568999999863
No 194
>PRK06242 flavodoxin; Provisional
Probab=36.17 E-value=2.5e+02 Score=23.28 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCC--CchhhHHHHHHHHHHHHhcCCCeEEEE
Q 020556 106 ANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP--PANENLMELLIMIDACRRASAKNITAV 183 (324)
Q Consensus 106 s~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~--p~nd~LmELLl~idAlr~agAkrItlV 183 (324)
+...+|+.|++.|+.++..+. .. ..+++.+.|.+|+.+-.. .....+.+ +++.+....-|.+.++
T Consensus 14 nT~~~A~~ia~~l~~~~~~i~--~~--------~~~~~~~~d~ii~g~pvy~~~~~~~~~~---fl~~~~~~~~k~~~~f 80 (150)
T PRK06242 14 NTEKIAKAIAEVLDAEVIDPG--DV--------NPEDLSEYDLIGFGSGIYFGKFHKSLLK---LIEKLPPVSGKKAFIF 80 (150)
T ss_pred CHHHHHHHHHHhcCcEEecHH--HC--------CcccHhHCCEEEEeCchhcCCcCHHHHH---HHHhhhhhcCCeEEEE
Confidence 345999999999976543321 11 124566778888776321 11233333 3344433233555444
Q ss_pred EcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 184 IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 184 iPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
--| ++ . .+. ..+.+.++|+..|+.-+-.+..
T Consensus 81 ~t~-g~--~-----~~~--~~~~l~~~l~~~g~~~~~~~~~ 111 (150)
T PRK06242 81 STS-GL--P-----FLK--YHKALKKKLKEKGFEIVGEFSC 111 (150)
T ss_pred ECC-CC--C-----cch--HHHHHHHHHHHCCCEEEEEEec
Confidence 333 22 1 111 1688899999999877766544
No 195
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=34.72 E-value=1.9e+02 Score=30.83 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
++.+.|+.. ++ =|-+---.+|..++++.|+..+...|| .| +.+|=-++...+-++.+. |++-|||||.
T Consensus 69 ~e~I~I~gD-yD--~DGitstail~~~L~~~g~~~~~~~IP----~R----~~eGYGl~~~~i~~~~~~-~~~LiItvD~ 136 (575)
T PRK11070 69 GTRIIVVGD-FD--ADGATSTALSVLALRSLGCSNVDYLVP----NR----FEDGYGLSPEVVDQAHAR-GAQLIVTVDN 136 (575)
T ss_pred CCEEEEEEe-cC--ccHHHHHHHHHHHHHHcCCCceEEEeC----CC----CcCCCCCCHHHHHHHHhc-CCCEEEEEcC
Confidence 445555542 22 266777788899999999977766666 12 344555666666665553 7788888887
Q ss_pred Cchh
Q 020556 225 HSGQ 228 (324)
Q Consensus 225 Hs~~ 228 (324)
-+..
T Consensus 137 Gi~~ 140 (575)
T PRK11070 137 GISS 140 (575)
T ss_pred CcCC
Confidence 6654
No 196
>PRK07308 flavodoxin; Validated
Probab=34.39 E-value=2.4e+02 Score=23.67 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=49.6
Q ss_pred EEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEec-CCC--CchhhHHHHHHHHHHH
Q 020556 99 IKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP-TCP--PANENLMELLIMIDAC 172 (324)
Q Consensus 99 ~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS-~~~--p~nd~LmELLl~idAl 172 (324)
+.|+.+|. ...+|+.|++.|.-.=..+++....+-+. +++...|.+|+-+ +.. ...+++.++ ++.+
T Consensus 4 ~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~-----~~l~~~d~vi~g~~t~g~G~~p~~~~~f---l~~l 75 (146)
T PRK07308 4 AKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDA-----SDFEDADIAIVATYTYGDGELPDEIVDF---YEDL 75 (146)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCH-----hHhccCCEEEEEeCccCCCCCCHHHHHH---HHHH
Confidence 44554443 34889999988842211233332222211 2344456666544 321 122344444 4444
Q ss_pred HhcCCC-eEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCe
Q 020556 173 RRASAK-NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 218 (324)
Q Consensus 173 r~agAk-rItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~ 218 (324)
++...+ +..+|+=+- |+.+ +.-.-.++.+.+.|+.+|+..
T Consensus 76 ~~~~l~~k~~~vfG~G-----d~~y-~~~~~a~~~~~~~l~~~g~~~ 116 (146)
T PRK07308 76 ADLDLSGKIYGVVGSG-----DTFY-DYFCKSVDDFEAQFALTGATK 116 (146)
T ss_pred hcCCCCCCEEEEEeeC-----CCCH-HHHHHHHHHHHHHHHHcCCeE
Confidence 444322 333454441 1111 111234677888888888643
No 197
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.39 E-value=2.3e+02 Score=28.26 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=72.6
Q ss_pred HHHHHHHHH-hCCceeceE--EeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEc
Q 020556 109 ALSQEIACY-MGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 185 (324)
Q Consensus 109 ~LA~~Ia~~-Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViP 185 (324)
.+|-.++.. +|+....+. +..|.--+-+.++-.... .+.++.... +.|-+-| ..+++... +++++|+=
T Consensus 250 ~aA~a~~~~l~g~~~~~i~~~l~~~~~~~~R~e~v~~~~--g~~~i~Ds~-~t~~~s~-----~~al~~~~-~~~i~vlG 320 (418)
T PRK00683 250 CAAYALANEVFPISEESFLEAVATFEKPPHRMEYLGEKD--GVHYINDSK-ATTVSAV-----EKALLAVG-NQVIVILG 320 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCCCCCceEEEeecC--CeEEEEcCC-CCCHHHH-----HHHHHhCC-CCEEEEEc
Confidence 445556667 587765554 345533333444332211 233333322 2233222 23333322 57777765
Q ss_pred CCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccC--CccceeeehHHHHHHHHhcCCCCCCeEEE
Q 020556 186 YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (324)
Q Consensus 186 YlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~--ipv~nL~~~~~l~~yl~~~~~~~~~~vVV 263 (324)
|+. +.++ .+ .+.+.+... ++.|+++..+...+...+. .++........+.+++.+.. ...+.|++
T Consensus 321 -------~~~-~~~d-~~--~l~~~~~~~-~~~v~~~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~~~~~~-~~gd~VLl 387 (418)
T PRK00683 321 -------GRN-KGCD-FS--SLLPVLRQT-AKHVVAMGECRQEIAQALSEKFPLTVVKDLQEAVSCAQEIA-QPGDVILL 387 (418)
T ss_pred -------CCC-CCCC-HH--HHHHHHHHh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEEE
Confidence 211 1111 11 345555544 8999999766544433221 12222333445556665432 35678899
Q ss_pred eCCCCchHHHHHHHH
Q 020556 264 SPDVGGVARARAFAK 278 (324)
Q Consensus 264 sPD~Ga~kRA~~~A~ 278 (324)
+|..++...-+.|.+
T Consensus 388 sp~~~s~d~f~~~~~ 402 (418)
T PRK00683 388 SPGCASFDQFRSFEE 402 (418)
T ss_pred CchhcccccccCHHH
Confidence 999988766555543
No 198
>PLN02489 homocysteine S-methyltransferase
Probab=34.23 E-value=4.7e+02 Score=25.79 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=54.3
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHh-CCCeEEEEc
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEA-GADRVLACD 223 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~-G~d~VitvD 223 (324)
|-|++++-++ .++-|+..+++++++.+.. +-+++-+- -+.+.+...|+++.. +++.+... ++ -.|-++
T Consensus 180 gvD~i~~ET~-----~~l~E~~a~~~~~~~~~~~-~p~~iS~t--~~~~~~l~~G~~~~~--~~~~~~~~~~~-~~iGiN 248 (335)
T PLN02489 180 GPDLIAFETI-----PNKLEAQAYVELLEEENIK-IPAWISFN--SKDGVNVVSGDSLLE--CASIADSCKKV-VAVGIN 248 (335)
T ss_pred CCCEEEEecc-----CChHHHHHHHHHHHHcCCC-CeEEEEEE--eCCCCccCCCCcHHH--HHHHHHhcCCc-eEEEec
Confidence 5699999876 3477888999999987531 11122111 134556667887644 34444432 12 122232
Q ss_pred CCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCc
Q 020556 224 LHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGG 269 (324)
Q Consensus 224 lHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga 269 (324)
.. .......+++.+... .+.+++|-|+.|-
T Consensus 249 C~-------------~p~~~~~~l~~l~~~---~~~pl~vyPNaG~ 278 (335)
T PLN02489 249 CT-------------PPRFIHGLILSIRKV---TSKPIVVYPNSGE 278 (335)
T ss_pred CC-------------CHHHHHHHHHHHHhh---cCCcEEEECCCCC
Confidence 21 112223455555543 3568999999874
No 199
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=34.12 E-value=3e+02 Score=28.61 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCC-------ceEEEe--c----cCcCCCcEEEEecCCCCchhhH
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADG-------EIYVQL--Q----ESVRGCDVYLVQPTCPPANENL 162 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDG-------E~~V~i--~----esVrG~dV~IVqS~~~p~nd~L 162 (324)
.+++.|+..--+-.=+.+.....|.++.-...+.++.+ +..+.+ . +.....|++|+.+.-++.+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p-- 84 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP-- 84 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH--
Confidence 45567776544444455555666877777777777721 122222 1 23445688888877666444
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCcccccccc-----cCCcchhHHHHHHHHHHhCC---------------------
Q 020556 163 MELLIMIDACRRASAKNITAVIPYFGYARADRKT-----QGRESIAAKLVANLITEAGA--------------------- 216 (324)
Q Consensus 163 mELLl~idAlr~agAkrItlViPYlpYaRQDR~~-----~~gepisak~vA~lL~~~G~--------------------- 216 (324)
++.+++..|++=++ -|=-|.+-+-..++ ..|-.-|..+++.||++.|.
T Consensus 85 -----~v~~A~~~gi~i~~-dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~ 158 (448)
T COG0771 85 -----LVEAAKAAGIEIIG-DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEP 158 (448)
T ss_pred -----HHHHHHHcCCcEEe-HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCC
Confidence 45666677765332 11111111101111 35777889999999999887
Q ss_pred CeEEEEcCCchhccccc----------CCccceeeehHHHHHHHHhc
Q 020556 217 DRVLACDLHSGQSMGYF----------DIPVDHVYCQPVILDYLASK 253 (324)
Q Consensus 217 d~VitvDlHs~~~~~fF----------~ipv~nL~~~~~l~~yl~~~ 253 (324)
.-++++++=|-|....- |+--|||.-+.-+-+|...+
T Consensus 159 ~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK 205 (448)
T COG0771 159 ADVYVLELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAK 205 (448)
T ss_pred CCEEEEEccccccccCccCCccEEEEecCCHHHhhhccCHHHHHHHH
Confidence 23788888888877532 34447777777788887543
No 200
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=34.02 E-value=1.4e+02 Score=28.43 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
++++.|++.-.+..+|+.++.+|.. ++..... +.|-+...........+|++|+=|.+.. +. |++-++..+|+.
T Consensus 42 ~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~-~~~~~~~~~~~~~~~~~d~~i~iS~sG~-t~---~~~~~~~~ak~~ 115 (321)
T PRK11543 42 EGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFF-VHPAEALHGDLGMIESRDVMLFISYSGG-AK---ELDLIIPRLEDK 115 (321)
T ss_pred CCcEEEEecChhHHHHHHHHHHHHc-CCCceee-cChHHHhhCCcCccCCCCEEEEEeCCCC-cH---HHHHHHHHHHHc
Confidence 4568788766777888888888753 3322211 2232322222234555689988887543 33 566778888999
Q ss_pred CCCeEE
Q 020556 176 SAKNIT 181 (324)
Q Consensus 176 gAkrIt 181 (324)
|++-|.
T Consensus 116 g~~vI~ 121 (321)
T PRK11543 116 SIALLA 121 (321)
T ss_pred CCeEEE
Confidence 986443
No 201
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.30 E-value=1.1e+02 Score=24.27 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=48.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
+++.+++...+..+|...+..|.. +++ .....++.+........+...|++|+=|.... +. +++-+++.+++.|
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~-~~---~~~~~~~~a~~~g 87 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLR-LGK-PVVLLSDPHLQLMSAANLTPGDVVIAISFSGE-TK---ETVEAAEIAKERG 87 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHH-cCC-ceEEecCHHHHHHHHHcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHcC
Confidence 557777666677888888888753 233 33344555544332233444677777776432 33 4555667888888
Q ss_pred CCeEEEEEc
Q 020556 177 AKNITAVIP 185 (324)
Q Consensus 177 AkrItlViP 185 (324)
++ +.++-.
T Consensus 88 ~~-iv~iT~ 95 (139)
T cd05013 88 AK-VIAITD 95 (139)
T ss_pred Ce-EEEEcC
Confidence 74 444443
No 202
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=32.49 E-value=1.5e+02 Score=28.31 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=46.3
Q ss_pred chhhHHHHHHHHHHHHhcCCCeEEEEEcCCC--cccccccccCCc-chhHHH-------HHHHHHHhCCCeEEEEcCCch
Q 020556 158 ANENLMELLIMIDACRRASAKNITAVIPYFG--YARADRKTQGRE-SIAAKL-------VANLITEAGADRVLACDLHSG 227 (324)
Q Consensus 158 ~nd~LmELLl~idAlr~agAkrItlViPYlp--YaRQDR~~~~ge-pisak~-------vA~lL~~~G~d~VitvDlHs~ 227 (324)
..|+++.-.+.-.++.+.+++ .+|+|=++ |+---+.| +|. .++... +++=|...|+++++.|+=|-.
T Consensus 39 gTD~~ia~~ia~~~~~~~~~~--a~vlP~i~yG~s~eH~~f-pGTitl~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGG 115 (250)
T COG1402 39 GTDALIAEAIAEKVAERLGAE--ALVLPTIYYGVSLEHMGF-PGTITLSPETLIALLVELVESLARHGFRKFVIVNGHGG 115 (250)
T ss_pred chhHHHHHHHHHHHHHHhCCC--eEEeCccccccchhhcCC-CceEEccHHHHHHHHHHHHHHHHhcCccEEEEEecCCC
Confidence 468888888888889998877 67888554 45443333 332 233222 334445579999999999965
Q ss_pred hcc
Q 020556 228 QSM 230 (324)
Q Consensus 228 ~~~ 230 (324)
...
T Consensus 116 N~~ 118 (250)
T COG1402 116 NSA 118 (250)
T ss_pred cHH
Confidence 433
No 203
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=32.31 E-value=1.7e+02 Score=25.81 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=36.7
Q ss_pred ECCCC-HHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCC--CchhhHHHHHHHHHHHHhcCCCe
Q 020556 103 SGTAN-PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP--PANENLMELLIMIDACRRASAKN 179 (324)
Q Consensus 103 sgss~-~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~--p~nd~LmELLl~idAlr~agAkr 179 (324)
|.+.| ..+|+.|++.|+. ..-+.+...++. +...|++++.+... ..++++.++| ++..-|+
T Consensus 6 S~TGNTkkvA~aI~~~l~~-~~~~~~~~~~~~---------~~~yD~i~lG~w~d~G~~d~~~~~fl------~~l~~Kk 69 (160)
T PF12641_consen 6 SRTGNTKKVAEAIAEALGA-KDIVSVEEPPED---------LEDYDLIFLGFWIDKGTPDKDMKEFL------KKLKGKK 69 (160)
T ss_pred CCCChHHHHHHHHHHHCCC-ceeEeccccccC---------CCCCCEEEEEcCccCCCCCHHHHHHH------HHccCCe
Confidence 34444 4899999999998 222333333332 33457777766542 2356665542 2233466
Q ss_pred EEEEEc
Q 020556 180 ITAVIP 185 (324)
Q Consensus 180 ItlViP 185 (324)
|-++--
T Consensus 70 V~lF~T 75 (160)
T PF12641_consen 70 VALFGT 75 (160)
T ss_pred EEEEEe
Confidence 654443
No 204
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=32.02 E-value=1.4e+02 Score=28.19 Aligned_cols=79 Identities=10% Similarity=0.157 Sum_probs=48.7
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceEEeecC-------CCceEEEeccCcCCCcEEEEecCCCCc-hhhHHHHHHHHH
Q 020556 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFA-------DGEIYVQLQESVRGCDVYLVQPTCPPA-NENLMELLIMID 170 (324)
Q Consensus 99 ~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFp-------DGE~~V~i~esVrG~dV~IVqS~~~p~-nd~LmELLl~id 170 (324)
+-|+.||.=-.|++.+.+..-++.+ ++-.|| .|++.+ ..+.|+.|+.+|.-.+.- --.+-+.-.-+.
T Consensus 2 i~iI~GSGl~~~~~~~~~~~~ipY~--~ip~fp~~tv~gH~g~l~~---G~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~ 76 (237)
T TIGR01698 2 MAIVLGSGWGGAVEALGEPVELPYA--EIPGFPAPTVSGHAGELIR---VRIGDGPVLVLGGRTHAYEGGDARAVVHPVR 76 (237)
T ss_pred EEEEEeCCHHHHHHhhcCceEeecc--cCCCCCCCcccCccceEEE---EEECCEEEEEEcCCCcccCCCcHHHhHHHHH
Confidence 4577788866777777555333333 244566 354433 345588898888432211 122335678899
Q ss_pred HHHhcCCCeEEE
Q 020556 171 ACRRASAKNITA 182 (324)
Q Consensus 171 Alr~agAkrItl 182 (324)
++|.+|++++.+
T Consensus 77 al~~lGv~~ii~ 88 (237)
T TIGR01698 77 TARATGAETLIL 88 (237)
T ss_pred HHHHcCCCEEEE
Confidence 999999998875
No 205
>PRK13671 hypothetical protein; Provisional
Probab=31.97 E-value=2.2e+02 Score=27.92 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=41.2
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEE
Q 020556 150 LVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (324)
Q Consensus 150 IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vi 220 (324)
||.+..|.-|-.+ .++-.+.+..+...|.+|+..-|.-|.. -..++...-++|+...|+|-||
T Consensus 5 IIaeFNP~H~GHl---~~~~~a~~~~~~d~vi~vpSg~~~qrg~-----pa~~~~~~R~~ma~~~G~DLVi 67 (298)
T PRK13671 5 IIAEYNPFHNGHI---YQINYIKNKFPNEKIIVILSGKYTQRGE-----IAVASFEKRKKIALKYGVDKVI 67 (298)
T ss_pred EEeeeCCccHHHH---HHHHHHHHhcCCCEEEEEECcCCCCCCC-----CCCCCHHHHHHHHHHcCCCEEE
Confidence 5666655445543 4555666667788888887777654431 1223677788888888888887
No 206
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=31.51 E-value=1.4e+02 Score=23.03 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=27.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEecc
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQE 141 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~e 141 (324)
..-.|+.++.+..-|+.|++.|+.......- .-+++.+.|-+..
T Consensus 43 ~~t~I~y~~~~~~~A~~la~~l~~~~~~~~~-~~~~~~v~vvlG~ 86 (90)
T PF13399_consen 43 ETTTIYYGPGDEAAARELAAALGGAEIVVDP-DRQDADVVVVLGK 86 (90)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCceEEecC-CCCCCCEEEEEeC
Confidence 4566777888899999999999854322211 3334445554443
No 207
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.40 E-value=2.1e+02 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=24.3
Q ss_pred CcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEE
Q 020556 142 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 142 sVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlVi 184 (324)
....+|++|+-|.+.. +. |++-.++.+|+.|++-| ++-
T Consensus 40 ~~~~~dl~I~iS~SG~-t~---e~i~~~~~a~~~g~~iI-~IT 77 (119)
T cd05017 40 FVDRKTLVIAVSYSGN-TE---ETLSAVEQAKERGAKIV-AIT 77 (119)
T ss_pred CCCCCCEEEEEECCCC-CH---HHHHHHHHHHHCCCEEE-EEe
Confidence 4556789888776532 34 45556677888898544 444
No 208
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.90 E-value=4.5e+02 Score=24.63 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHhCCceec-eEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEc
Q 020556 107 NPALSQEIACYMGVELGK-INIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 185 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~-i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViP 185 (324)
|.++-++|++..++++.- -.++.+.|=+. +. + .|.+-+++.+.... + ..++.+.+++.+..+|.+=+-
T Consensus 62 n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~---l~-~-~G~~~vvigs~~~~-~-----~~~~~~~~~~~~~~~i~vsiD 130 (258)
T PRK01033 62 NYELIENLASECFMPLCYGGGIKTLEQAKK---IF-S-LGVEKVSINTAALE-D-----PDLITEAAERFGSQSVVVSID 130 (258)
T ss_pred cHHHHHHHHHhCCCCEEECCCCCCHHHHHH---HH-H-CCCCEEEEChHHhc-C-----HHHHHHHHHHhCCCcEEEEEE
Confidence 568888898887654310 01111111000 01 1 26676777653221 1 234556666666445544332
Q ss_pred C-CC-------cccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCC
Q 020556 186 Y-FG-------YARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSS 257 (324)
Q Consensus 186 Y-lp-------YaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~ 257 (324)
. -+ |.+.-+ ....+....+++.++..|++.++.-|.+..+...=++ + +.+ +.+.+. .
T Consensus 131 ~k~g~~~~~~v~~~gw~---~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d-----~---~~i-~~~~~~---~ 195 (258)
T PRK01033 131 VKKNLGGKFDVYTHNGT---KKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYD-----L---ELL-KSFRNA---L 195 (258)
T ss_pred EecCCCCcEEEEEcCCe---ecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCC-----H---HHH-HHHHhh---C
Confidence 2 11 111100 1235667889999999999999999999877653232 2 222 334432 3
Q ss_pred CCeEEEeCCCCchHHHHHHHHHcCCCCEEEE
Q 020556 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIV 288 (324)
Q Consensus 258 ~~~vVVsPD~Ga~kRA~~~A~~L~~~~~~~~ 288 (324)
+-++|.+=+.+..+-+..+.+..| ++-+.+
T Consensus 196 ~ipvIasGGv~s~eD~~~l~~~~G-vdgViv 225 (258)
T PRK01033 196 KIPLIALGGAGSLDDIVEAILNLG-ADAAAA 225 (258)
T ss_pred CCCEEEeCCCCCHHHHHHHHHHCC-CCEEEE
Confidence 578999999999888888876675 454443
No 209
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.51 E-value=3.3e+02 Score=27.14 Aligned_cols=150 Identities=10% Similarity=0.102 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcEEEE-ecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEE
Q 020556 108 PALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLV-QPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV~IV-qS~~~p~nd~LmELLl~idAlr~agAkrItlVi 184 (324)
-..|-.+|..||++...+. +..|.--+-+.++-... ..+.+| .+.... -+.+. -++++++. -.++++|+
T Consensus 273 a~aAia~a~~lgi~~~~i~~~L~~f~~~~gR~E~v~~~--~~~~~i~Ds~a~n-~~a~~---~al~~l~~--~~~~i~Il 344 (438)
T PRK03806 273 ALAALALADAVGIPRASSLKALTTFTGLPHRFQLVLEH--NGVRWINDSKATN-VGSTE---AALNGLHV--DGTLHLLL 344 (438)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCCeEEEEEee--CCEEEEEcCCCCC-HHHHH---HHHHhCcc--CCcEEEEE
Confidence 3567788888898876555 56665444444443221 233333 332211 13332 23344432 23677887
Q ss_pred cCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEe
Q 020556 185 PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVS 264 (324)
Q Consensus 185 PYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVs 264 (324)
-- +|+ +...+ .+.+++.... ..|+++..+...+...+...+..........+++.+.. ...+.|+++
T Consensus 345 G~-----~~k----~~d~~--~l~~~l~~~~-~~v~~~g~~~~~l~~~~~~~~~~~~~~~~av~~a~~~~-~~gd~VLls 411 (438)
T PRK03806 345 GG-----DGK----SADFS--PLARYLNGDN-IRLYCFGRDGAQLAALRPEVSQLTETMEQAMRLIAPRV-QPGDMVLLS 411 (438)
T ss_pred CC-----cCC----CCCHH--HHHHHHHhhC-cEEEEECCCHHHHHHHhhcceEecCCHHHHHHHHHHhC-CCCCEEEEC
Confidence 62 222 11222 2556565543 47888877655554332211111122344455554432 356789999
Q ss_pred CCCCchHHHHHHHH
Q 020556 265 PDVGGVARARAFAK 278 (324)
Q Consensus 265 PD~Ga~kRA~~~A~ 278 (324)
|..-+...-+.|.+
T Consensus 412 p~~as~d~f~~~~~ 425 (438)
T PRK03806 412 PACASLDQFKNFEQ 425 (438)
T ss_pred hhhhhhcCccCHHH
Confidence 99877766655554
No 210
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=30.31 E-value=1.8e+02 Score=25.15 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcC
Q 020556 208 ANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS 281 (324)
Q Consensus 208 A~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~ 281 (324)
++-+..+|+|+|+.+|-. .. ..|+ .......+++.+++. ..+.++++-..-+...+-.+|.+|+
T Consensus 44 ~~~~~~~Gad~v~~~~~~--~~-~~~~----~~~~a~al~~~i~~~---~p~~Vl~~~t~~g~~la~rlAa~L~ 107 (168)
T cd01715 44 AAALKAYGADKVLVAEDP--AL-AHYL----AEPYAPALVALAKKE---KPSHILAGATSFGKDLAPRVAAKLD 107 (168)
T ss_pred HHHHHhcCCCEEEEecCh--hh-cccC----hHHHHHHHHHHHHhc---CCCEEEECCCccccchHHHHHHHhC
Confidence 344456899999999732 11 1122 111245667766653 2577888888888899999999997
No 211
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=30.24 E-value=1.2e+02 Score=29.69 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
+++. |.|.++...+...++.+=.++..+.+.-+.+.|....-...+..++++|.-|.+.. +. |++-++..+|+.|
T Consensus 45 ~~I~-~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~~~~lvI~iS~SGe-T~---e~i~al~~ak~~G 119 (340)
T PRK11382 45 DRIY-FVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGK-TE---EVIKALELGRACG 119 (340)
T ss_pred CEEE-EEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCCCCCEEEEEcCCCC-CH---HHHHHHHHHHHcC
Confidence 4454 44555555555555433223333335567887776544444555688877665433 23 4566677788888
Q ss_pred CCeE
Q 020556 177 AKNI 180 (324)
Q Consensus 177 AkrI 180 (324)
++.|
T Consensus 120 a~~I 123 (340)
T PRK11382 120 ALTA 123 (340)
T ss_pred CeEE
Confidence 7544
No 212
>PRK13670 hypothetical protein; Provisional
Probab=29.73 E-value=4.5e+02 Score=26.62 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCeEEEEEcCCCcccccccccCCc--chhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehH
Q 020556 167 IMIDACRRASAKNITAVIPYFGYARADRKTQGRE--SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQP 244 (324)
Q Consensus 167 l~idAlr~agAkrItlViPYlpYaRQDR~~~~ge--pisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~ 244 (324)
++-.+.+.+++.-+.+|+|=-= +++|+ -++-..=++++..+|+|.|+.+..= .-..++ .
T Consensus 20 ~i~~a~~~a~~~~~~~Vmp~~f-------~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~-----------~a~~sa-e 80 (388)
T PRK13670 20 HLNQAKKLTNADVTIAVMSGNF-------VQRGEPAIVDKWTRAKMALENGVDLVVELPFL-----------YSVQSA-D 80 (388)
T ss_pred HHHHHHHHHhCCCcEEEecHHH-------hCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCc-----------hHhCCH-H
Confidence 3334444455566778884322 22344 5677778899999999999988632 223333 3
Q ss_pred HHHH----HHHhcCCCCCCeEEEeCCCCchHHHHHHHHHc
Q 020556 245 VILD----YLASKTVSSNDLVVVSPDVGGVARARAFAKKL 280 (324)
Q Consensus 245 ~l~~----yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L 280 (324)
.+++ .| +. .. -+.++++-|.|...--+.+++.+
T Consensus 81 ~F~~~aV~iL-~~-l~-v~~lv~G~e~g~~~~L~~~~~~l 117 (388)
T PRK13670 81 FFAEGAVSIL-DA-LG-VDSLVFGSESGDIEDFQKIAKIL 117 (388)
T ss_pred HHHHhHHHHH-HH-cC-CCEEEEcCCCCCHHHHHHHHHHH
Confidence 3443 34 32 12 35689999988876655555433
No 213
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=29.71 E-value=1.7e+02 Score=21.70 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHhC--CceeceEEeecCC
Q 020556 97 NRIKLFSGTANPALSQEIACYMG--VELGKINIKRFAD 132 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg--~~l~~i~~~rFpD 132 (324)
...++++|.+...|++++.+.|+ -++.---.-.|..
T Consensus 4 ~~Yr~lt~~d~~~fc~rVt~aL~~GW~l~GsP~~t~~~ 41 (54)
T PF08410_consen 4 KHYRVLTGPDDSAFCHRVTEALNEGWQLYGSPTYTFDG 41 (54)
T ss_pred ceeEEEECCChHHHHHHHHHHHHcCCEecCCceEEECC
Confidence 34789999999999999999984 5555444555554
No 214
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=29.26 E-value=2.8e+02 Score=27.62 Aligned_cols=111 Identities=14% Similarity=0.235 Sum_probs=61.6
Q ss_pred CCCCEEEEECCC---CHHHHHHHHHHhCC--ceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHH-HHHH
Q 020556 95 TNNRIKLFSGTA---NPALSQEIACYMGV--ELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLME-LLIM 168 (324)
Q Consensus 95 ~~~~~~Ifsgss---~~~LA~~Ia~~Lg~--~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmE-LLl~ 168 (324)
.++++.|+.+|. ...+|+.||+-+.. .=.++++...++-... .+.+++...|.+|+.|-.. |...+. +.-+
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~-~i~~~~~~~d~ii~GspT~--~~~~~~~~~~~ 322 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKN-DIITEVFKSKAILVGSSTI--NRGILSSTAAI 322 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHH-HHHHHHHhCCEEEEECCCc--CccccHHHHHH
Confidence 366788887766 45899999998862 1124444444331100 1112233468888876332 233222 3333
Q ss_pred HHHHHhcC-CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCe
Q 020556 169 IDACRRAS-AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 218 (324)
Q Consensus 169 idAlr~ag-AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~ 218 (324)
.+.++... ..++.+++=-++|+ |+ ..+.+.+.|+.+|++.
T Consensus 323 l~~l~~~~~~~K~~a~FGsygw~--------g~--a~~~~~~~l~~~g~~~ 363 (394)
T PRK11921 323 LEEIKGLGFKNKKAAAFGSYGWS--------GE--SVKIITERLKKAGFEI 363 (394)
T ss_pred HHHhhccCcCCCEEEEEecCCCc--------cH--HHHHHHHHHHHCCCEE
Confidence 44444443 24566677666772 44 3577999999888644
No 215
>PRK05723 flavodoxin; Provisional
Probab=28.32 E-value=2.9e+02 Score=23.92 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=54.0
Q ss_pred CEEEEECCC---CHHHHHHHHHHhCCceeceEEeecCCCceEE-EeccCcCCCcEEEEecCCC--CchhhHHHHHHHHHH
Q 020556 98 RIKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYV-QLQESVRGCDVYLVQPTCP--PANENLMELLIMIDA 171 (324)
Q Consensus 98 ~~~Ifsgss---~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V-~i~esVrG~dV~IVqS~~~--p~nd~LmELLl~idA 171 (324)
++.||.||. +..+|++|++.|+-.-.++.... +..+ .+ ....-+.++++.||.. ..-|+..+++-.+..
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~----~~~~~~~-~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~ 76 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNP----RASLQDL-QAFAPEALLAVTSTTGMGELPDNLMPLYSAIRD 76 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecC----cCCHhHH-HhCCCCeEEEEECCCCCCCCchhHHHHHHHHHh
Confidence 356777765 45888989888852211222110 1111 11 1111235677777752 112555554433321
Q ss_pred HH--hcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEE
Q 020556 172 CR--RASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLAC 222 (324)
Q Consensus 172 lr--~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vitv 222 (324)
-. ...-+++ +|+ .=-|+..-+.=.-.++.+-+.|+.+|+.+|.-.
T Consensus 77 ~~~~~l~~~~~-aVf-----GLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~ 123 (151)
T PRK05723 77 QLPAAWRGLPG-AVI-----ALGDSSYGDTFCGGGEQMRELFAELGVREVQPM 123 (151)
T ss_pred cCccCCCCCEE-EEE-----eEeCCcchHHHhHHHHHHHHHHHHCCCcEeecc
Confidence 10 1122232 232 111221101112357888899999999988753
No 216
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.10 E-value=4e+02 Score=23.07 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEec-CC--CCchhhHHHHHHHHHHHHhc--CCCeEE
Q 020556 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP-TC--PPANENLMELLIMIDACRRA--SAKNIT 181 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS-~~--~p~nd~LmELLl~idAlr~a--gAkrIt 181 (324)
...+|+.|++.|+. ..+++....+-. ..++...|++|+.+ +. ....+++.++ ++.+... .-+++.
T Consensus 13 Te~vA~~Ia~~l~~--~~~~i~~~~~~~-----~~~l~~~d~ii~gspty~~g~~p~~~~~f---l~~l~~~~l~gk~v~ 82 (167)
T TIGR01752 13 TEGIAEKIQKELGE--DDVDVFNIAKAS-----KEDLNAYDKLILGTPTWGVGELQEDWEDF---LPTLEELDFTGKTVA 82 (167)
T ss_pred HHHHHHHHHHHhCC--CceEEEEcccCC-----HhHHhhCCEEEEEecCCCCCcCcHHHHHH---HHHhhcCCCCCCEEE
Confidence 34889999999874 223333333321 12455667777665 32 1112334333 3333322 234443
Q ss_pred EEEcCC---CcccccccccCCcchhHHHHHHHHHHhCCCeEEEE
Q 020556 182 AVIPYF---GYARADRKTQGRESIAAKLVANLITEAGADRVLAC 222 (324)
Q Consensus 182 lViPYl---pYaRQDR~~~~gepisak~vA~lL~~~G~d~Vitv 222 (324)
++-.- +|+. .-.-..+.+.++|+..|+..|-.+
T Consensus 83 -~fg~g~~~~y~~-------~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 83 -LFGLGDQEGYSE-------TFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred -EEecCCCCcccH-------HHHHHHHHHHHHHHHcCCeEEcee
Confidence 33321 2211 112346778899999898766554
No 217
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=28.02 E-value=2.7e+02 Score=27.92 Aligned_cols=63 Identities=6% Similarity=0.027 Sum_probs=42.3
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
+.|+.||...+. .-..+-.++.||+.|. ++.++=+-+- -|+..+.+.++++ ++++|+++|-
T Consensus 273 ~ad~~iv~~Gs~-----~~~a~eAv~~Lr~~G~-~v~~l~~~~l-----------~Pfp~~~i~~~~~--~~k~VivvEe 333 (376)
T PRK08659 273 DAEVVVVAYGSV-----ARSARRAVKEAREEGI-KVGLFRLITV-----------WPFPEEAIRELAK--KVKAIVVPEM 333 (376)
T ss_pred CCCEEEEEeCcc-----HHHHHHHHHHHHhcCC-ceEEEEeCee-----------cCCCHHHHHHHHh--cCCEEEEEeC
Confidence 568888876542 2344455667777776 5665544322 2577778889887 5799999999
Q ss_pred Cc
Q 020556 225 HS 226 (324)
Q Consensus 225 Hs 226 (324)
|.
T Consensus 334 ~~ 335 (376)
T PRK08659 334 NL 335 (376)
T ss_pred CH
Confidence 84
No 218
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=27.63 E-value=87 Score=30.54 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=43.1
Q ss_pred CCCEEEEECCCCHH---HHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEe--cCCCCchhhHHHHHHHHH
Q 020556 96 NNRIKLFSGTANPA---LSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQ--PTCPPANENLMELLIMID 170 (324)
Q Consensus 96 ~~~~~Ifsgss~~~---LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVq--S~~~p~nd~LmELLl~id 170 (324)
+..+-|+.||+--. |+..+-...-++.++ |.|++.+ ..+.|++|+++| .-.+...-.-+..---+.
T Consensus 3 ~p~igIIgGSGl~~~~~l~~~~~~~~~tpyg~------psg~l~~---G~l~G~~V~~l~RhGr~H~y~p~~i~~rAni~ 73 (289)
T PRK08931 3 KAVLGIIGGSGVYDIDGLEDARWERVESPWGE------PSDALLF---GRLGGVPMVFLPRHGRGHRLSPSDINYRANID 73 (289)
T ss_pred CceEEEEecCCcCCccccccceeeeeEcCCCC------CcCcEEE---EEECCEEEEEEeCCCCCCccChHHcccHHHHH
Confidence 34677888887542 344333333333333 3455543 245588999886 222211222233333678
Q ss_pred HHHhcCCCeEEE
Q 020556 171 ACRRASAKNITA 182 (324)
Q Consensus 171 Alr~agAkrItl 182 (324)
|+|.+|+++|.+
T Consensus 74 alk~lGv~~ii~ 85 (289)
T PRK08931 74 ALKRAGVTDIVS 85 (289)
T ss_pred HHHHcCCCEEEE
Confidence 999999998875
No 219
>PRK08841 aspartate kinase; Validated
Probab=27.06 E-value=5.6e+02 Score=25.82 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=64.4
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcC
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDl 224 (324)
|..+++|.|...-.-+.++++.. .+ .++ ....-.|....-||.+++.+++..|+..|++.... |.
T Consensus 33 g~~vvvVvSa~~~~td~ll~~~~---~~-----~~~------~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l-~~ 97 (392)
T PRK08841 33 GNQVVVVVSAMAGETNRLLGLAK---QV-----DSV------PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSL-TG 97 (392)
T ss_pred CCCEEEEECCCchHHHHHHHhhh---hh-----ccC------CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-eh
Confidence 56788888876545566666322 11 111 11111233334689999999999999999855443 21
Q ss_pred Cc--hhcccccC-CccceeeehHHHHHHHHhcCCCCCCeEEEeCCC--------------CchHHHHHHHHHcCCCCEEE
Q 020556 225 HS--GQSMGYFD-IPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV--------------GGVARARAFAKKLSDAPLAI 287 (324)
Q Consensus 225 Hs--~~~~~fF~-ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~--------------Ga~kRA~~~A~~L~~~~~~~ 287 (324)
-. -...+.|+ ..+.++. ...+.+++.+ ....||++.. |+=.-|..+|..|+ ++...
T Consensus 98 ~~~~i~t~~~~~~~~i~~~~-~~~i~~ll~~-----~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~-Ad~l~ 170 (392)
T PRK08841 98 AQANIVTDNQHNDATIKHID-TSTITELLEQ-----DQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALN-ADECQ 170 (392)
T ss_pred hHcCEEecCCCCCceechhh-HHHHHHHHhC-----CCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcC-CCEEE
Confidence 11 11112332 2233331 2344444442 3455665542 34456777788886 55444
Q ss_pred E
Q 020556 288 V 288 (324)
Q Consensus 288 ~ 288 (324)
+
T Consensus 171 i 171 (392)
T PRK08841 171 I 171 (392)
T ss_pred E
Confidence 4
No 220
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.94 E-value=1.2e+02 Score=28.27 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=48.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.+++.+++...+..+|+.++..|.. ++.- ..-..|..........+.-+||+|+=|.... +.++ +-++..+|+.
T Consensus 128 a~~I~i~G~G~s~~~A~~~~~~l~~-~g~~-~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~~~---~~~~~~ak~~ 201 (278)
T PRK11557 128 ARRIILTGIGASGLVAQNFAWKLMK-IGIN-AVAERDMHALLATVQALSPDDLLLAISYSGE-RREL---NLAADEALRV 201 (278)
T ss_pred CCeEEEEecChhHHHHHHHHHHHhh-CCCe-EEEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CHHH---HHHHHHHHHc
Confidence 3568888877778899999888753 2222 1223443322222234555788888777543 4544 4456778888
Q ss_pred CCCeEE
Q 020556 176 SAKNIT 181 (324)
Q Consensus 176 gAkrIt 181 (324)
|++-|.
T Consensus 202 ga~iI~ 207 (278)
T PRK11557 202 GAKVLA 207 (278)
T ss_pred CCCEEE
Confidence 986554
No 221
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=26.52 E-value=80 Score=28.81 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCeEEEE-------EcCCCcccccccccCCcchhHHH---------HHHHHHHhCCCeEEEEcCCc-hhc
Q 020556 167 IMIDACRRASAKNITAV-------IPYFGYARADRKTQGRESIAAKL---------VANLITEAGADRVLACDLHS-GQS 229 (324)
Q Consensus 167 l~idAlr~agAkrItlV-------iPYlpYaRQDR~~~~gepisak~---------vA~lL~~~G~d~VitvDlHs-~~~ 229 (324)
-+.+.++++||+.|-.+ ||=+.-.|. +..+....+|-+ -++.|-.|| ..||++|+.- ..+
T Consensus 48 ~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~--~v~~~GIy~ADVVLVPLEDGDR~EAL~~mG-K~VIaIDLNPLSRT 124 (178)
T PF02006_consen 48 KIAELLREHGAEEVLGVNPDASERIPGLDHERA--KVSKEGIYSADVVLVPLEDGDRTEALVKMG-KTVIAIDLNPLSRT 124 (178)
T ss_pred HHHHHHHHcCCCEeeccCCcccccCCCCCCccc--eECcccceeccEEEeccCCCcHHHHHHHcC-CeEEEEeCCCcccc
Confidence 34667788998877655 777776663 222233333333 367888898 8999999983 222
Q ss_pred ccccCCcc-ce-eeehHHHHHHHHh
Q 020556 230 MGYFDIPV-DH-VYCQPVILDYLAS 252 (324)
Q Consensus 230 ~~fF~ipv-~n-L~~~~~l~~yl~~ 252 (324)
...=++++ || +.+.|.+.++.++
T Consensus 125 ar~AtitIVDni~RA~p~~~~~~~~ 149 (178)
T PF02006_consen 125 ARTATITIVDNITRAIPNMIEFARE 149 (178)
T ss_pred cccCceeeehhHHHHHHHHHHHHHH
Confidence 22224553 44 3566777777665
No 222
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.47 E-value=3e+02 Score=24.68 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=41.2
Q ss_pred HHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhc--CCCCCCeEEEeCCCC-----chHHHHHHHHHcCC
Q 020556 210 LITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK--TVSSNDLVVVSPDVG-----GVARARAFAKKLSD 282 (324)
Q Consensus 210 lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~--~~~~~~~vVVsPD~G-----a~kRA~~~A~~L~~ 282 (324)
.|...|+..| .+|.=+- + .+...-...+.+.+++.+. .+..++.+|||-.+| ..++|+.+++.||
T Consensus 35 ~Lk~~Gik~l-i~DkDNT-----L-~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lg- 106 (168)
T PF09419_consen 35 HLKKKGIKAL-IFDKDNT-----L-TPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALG- 106 (168)
T ss_pred hhhhcCceEE-EEcCCCC-----C-CCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhC-
Confidence 4777787444 4554321 1 1222223345666666442 122347899999987 5688999999997
Q ss_pred CCEE
Q 020556 283 APLA 286 (324)
Q Consensus 283 ~~~~ 286 (324)
.++.
T Consensus 107 Ipvl 110 (168)
T PF09419_consen 107 IPVL 110 (168)
T ss_pred CcEE
Confidence 6743
No 223
>PRK09213 pur operon repressor; Provisional
Probab=26.39 E-value=2.6e+02 Score=26.99 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEe-ecCCCceE--------------EEec-cCc-CCCcEEEEecCCCCchhhHHHHH
Q 020556 104 GTANPALSQEIACYMGVELGKINIK-RFADGEIY--------------VQLQ-ESV-RGCDVYLVQPTCPPANENLMELL 166 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~-rFpDGE~~--------------V~i~-esV-rG~dV~IVqS~~~p~nd~LmELL 166 (324)
....-.||..+|..||+++.-+.-. +..+|++. ..+. ..+ +|+.|+||...-.. -. -+.
T Consensus 138 et~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~T-Gg---Ti~ 213 (271)
T PRK09213 138 ETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKA-GG---TIN 213 (271)
T ss_pred ccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeeccc-CH---hHH
Confidence 4667799999999999987555432 22244321 1111 122 68888887543221 11 245
Q ss_pred HHHHHHHhcCCC
Q 020556 167 IMIDACRRASAK 178 (324)
Q Consensus 167 l~idAlr~agAk 178 (324)
-+++.++++|++
T Consensus 214 a~i~Ll~e~Ga~ 225 (271)
T PRK09213 214 GMISLLKEFDAE 225 (271)
T ss_pred HHHHHHHHCCCE
Confidence 667778888874
No 224
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.15 E-value=2.1e+02 Score=23.48 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=50.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~a 175 (324)
.+++.+++.-.+-..|.+.+-+|.- .+.+...-+.++|..--..+.+...+++|+-+... +.--++.-++..+|+.
T Consensus 13 ~~~i~~~G~G~s~~~a~e~~~kl~e-~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g---~t~~~~~~~~~~~~~~ 88 (153)
T cd05009 13 AKSFYVLGRGPNYGTALEGALKLKE-TSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPED---RLEEKLESLIKEVKAR 88 (153)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHHHH-HHhhcceeccHHHhccChhhhccCCCcEEEEecCC---hhHHHHHHHHHHHHHc
Confidence 3556666544566777777766653 24566677777777665556665566666655432 2222345567888888
Q ss_pred CCCeEEEEE
Q 020556 176 SAKNITAVI 184 (324)
Q Consensus 176 gAkrItlVi 184 (324)
|++-| ++-
T Consensus 89 ~~~vi-~it 96 (153)
T cd05009 89 GAKVI-VIT 96 (153)
T ss_pred CCEEE-EEe
Confidence 87444 444
No 225
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=25.93 E-value=6.7e+02 Score=24.96 Aligned_cols=112 Identities=7% Similarity=0.054 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEe--------ecCCCc------eEEEecc---CcCCCcEEEEecCCCCc
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIK--------RFADGE------IYVQLQE---SVRGCDVYLVQPTCPPA 158 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~--------rFpDGE------~~V~i~e---sVrG~dV~IVqS~~~p~ 158 (324)
-.+|.|+.-.+..++...+-..+..+ +++.+. ++|-++ ..+.+.. --.|+|+.||...
T Consensus 163 iPnl~V~~Pad~~e~~~~l~~a~~~~-gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G---- 237 (356)
T PLN02683 163 VPGLKVLAPYSSEDARGLLKAAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFS---- 237 (356)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEcc----
Confidence 46788887666566666666555432 233331 122111 1111111 0137899888764
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCch
Q 020556 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSG 227 (324)
Q Consensus 159 nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~ 227 (324)
..+-+.+-.++.|++.|. ++++|=+.. =.|+....+.+.++.. ++|+|+|=|..
T Consensus 238 -~~v~~Al~Aa~~L~~~GI-~v~VId~~~-----------ikPlD~~~l~~~~~~t--~~vvtvEE~~~ 291 (356)
T PLN02683 238 -KMVGYALKAAEILAKEGI-SAEVINLRS-----------IRPLDRDTINASVRKT--NRLVTVEEGWP 291 (356)
T ss_pred -HHHHHHHHHHHHHHhcCC-CEEEEECCC-----------CCccCHHHHHHHHhhc--CeEEEEeCCCc
Confidence 335556666777777664 455443222 2467778888888865 59999998874
No 226
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.90 E-value=1.5e+02 Score=27.98 Aligned_cols=79 Identities=15% Similarity=0.303 Sum_probs=47.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcC
Q 020556 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (324)
Q Consensus 97 ~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~ag 176 (324)
.++.|++...+..+|..++.+|.- ++ ....-++|.+........+...|++|+=|.+.. +. |++-++..+|+.|
T Consensus 141 ~~I~i~G~G~S~~~A~~l~~~l~~-~g-~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~-t~---~~~~~~~~ak~~g 214 (292)
T PRK11337 141 RQRDLYGAGGSAAIARDVQHKFLR-IG-VRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGR-TS---DVIEAVELAKKNG 214 (292)
T ss_pred CeEEEEEecHHHHHHHHHHHHHhh-CC-CeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHCC
Confidence 456677655667788888877652 22 223345665433222233455788888777543 33 3556778899999
Q ss_pred CCeEE
Q 020556 177 AKNIT 181 (324)
Q Consensus 177 AkrIt 181 (324)
++-|.
T Consensus 215 ~~ii~ 219 (292)
T PRK11337 215 AKIIC 219 (292)
T ss_pred CeEEE
Confidence 85443
No 227
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=25.80 E-value=2e+02 Score=28.05 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceec-eEEeecCCCceEEEeccCcCCCcEEEE--ecCCCCchhhHHHHHHHHHHH
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGK-INIKRFADGEIYVQLQESVRGCDVYLV--QPTCPPANENLMELLIMIDAC 172 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~-i~~~rFpDGE~~V~i~esVrG~dV~IV--qS~~~p~nd~LmELLl~idAl 172 (324)
+..+-|+.||+--.|+ .+. +..... -+..-||.|++.+ ..+.|++|+++ |.-.+.....-+..--.+.++
T Consensus 3 ~~~igIIgGSGl~~l~-~l~---~~~~~~~~tp~G~ps~~l~~---G~l~g~~v~~l~RhGr~H~y~p~~i~~rAni~al 75 (290)
T PRK07432 3 QAKIGIIGGSGLYKME-ALK---DVEEVQLETPFGSPSDALIV---GTLDGTRVAFLARHGRNHTLLPTELPFRANIYAM 75 (290)
T ss_pred CCcEEEEecCccCChh-hcC---cceEEEeeCCCCCCCCCEEE---EEECCEEEEEEECCCCCCccChhhcCcHHHHHHH
Confidence 3468899999876655 221 111111 1112345666554 34568899888 543332222223333347899
Q ss_pred HhcCCCeEEE
Q 020556 173 RRASAKNITA 182 (324)
Q Consensus 173 r~agAkrItl 182 (324)
|.+|+++|.+
T Consensus 76 k~lGv~~ii~ 85 (290)
T PRK07432 76 KQLGVEYLIS 85 (290)
T ss_pred HHcCCCEEEE
Confidence 9999999875
No 228
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=25.66 E-value=1.9e+02 Score=28.08 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCc
Q 020556 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS 226 (324)
Q Consensus 176 gAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs 226 (324)
+..+..+|+-=||. ...-..+..-|+.|-.+|+.|+..|.+-+|+.|-..
T Consensus 38 ~~~~~VlI~TGFpv-~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~ 87 (291)
T PF14336_consen 38 SHAKSVLIVTGFPV-PPAPPPETDGPPGAAALARALQALGKEVVIVTDERC 87 (291)
T ss_pred cCCCcEEEEeCCCC-CCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHH
Confidence 33344466666666 222334556799999999999999999999998654
No 229
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=25.56 E-value=2.4e+02 Score=27.37 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=53.7
Q ss_pred EEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCC-------ch--------hcccccCCccce-------
Q 020556 182 AVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH-------SG--------QSMGYFDIPVDH------- 239 (324)
Q Consensus 182 lViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlH-------s~--------~~~~fF~ipv~n------- 239 (324)
+..|--.|+.. .--|++..+.++|+. ..++.+|.- .. .+.|..+++++.
T Consensus 10 ~~~~~~~~~~~------~~lvs~~~L~~~l~~---~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~ 80 (320)
T PLN02723 10 ANYSTQSISTN------EPVVSVDWLHANLRE---PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD 80 (320)
T ss_pred ccCcccccccC------CceecHHHHHHHhcC---CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC
Confidence 34454456532 245788888888864 467888872 11 122222232211
Q ss_pred ----eeehHHHHHHHHhcCCCCCCeEEEeCCCCch--HHHHHHHHHcCCCCEEEE
Q 020556 240 ----VYCQPVILDYLASKTVSSNDLVVVSPDVGGV--ARARAFAKKLSDAPLAIV 288 (324)
Q Consensus 240 ----L~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~--kRA~~~A~~L~~~~~~~~ 288 (324)
+.....|.+++.+..+..+..|||.-+.|.. .|+--+.+.+|...+.++
T Consensus 81 ~~~~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~L 135 (320)
T PLN02723 81 LPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVL 135 (320)
T ss_pred cCCCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEc
Confidence 1223567788877766667788888666643 344344566764334444
No 230
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=25.50 E-value=1e+02 Score=29.80 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=39.3
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCc-----chhHHHHHHHHHHhCCCeE
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRE-----SIAAKLVANLITEAGADRV 219 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~ge-----pisak~vA~lL~~~G~d~V 219 (324)
|+.|-.|-++.. ...-. +-|+-.|.+.+ -.+|+.+++.-+| +.+.| +.+...=.++|+.+|+|.|
T Consensus 21 ~~~ig~V~TmG~-LH~GH--~~LI~~a~~~a----~~vVvtf~~nP~q---f~~~ed~~~y~~t~e~d~~ll~~~GvD~v 90 (277)
T cd00560 21 GKTIGFVPTMGA-LHEGH--LSLVRRARAEN----DVVVVSIFVNPLQ---FGPNEDLDRYPRTLEADLALLEEAGVDLL 90 (277)
T ss_pred CCeEEEEECCCc-ccHHH--HHHHHHHHHhC----CEEEEEecCChhh---cCCcccccccCCCHHHHHHHHHHCCCCEE
Confidence 556655555542 22222 23333444433 3468888888888 33322 5566777789999999988
No 231
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.23 E-value=2.9e+02 Score=26.36 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCCC
Q 020556 205 KLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP 284 (324)
Q Consensus 205 k~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~~ 284 (324)
.-+.+-...+|+|.|++.|+ |.++ ...+.++++++ +.+...+|+|.. ..+|.+.+++.-. .
T Consensus 109 e~F~~~~~~aGvdgviipDL-----------P~ee---~~~~~~~~~~~--gi~~I~lv~PtT-~~eri~~i~~~a~--g 169 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPDL-----------PYEE---SDYLISVCNLY--NIELILLIAPTS-SKSRIQKIARAAP--G 169 (263)
T ss_pred HHHHHHHHHcCCeEEEecCC-----------CHHH---HHHHHHHHHHc--CCCEEEEECCCC-CHHHHHHHHHhCC--C
Confidence 33566667889999999985 3333 34555566665 356778999997 5788888888553 3
Q ss_pred EEEE
Q 020556 285 LAIV 288 (324)
Q Consensus 285 ~~~~ 288 (324)
++|+
T Consensus 170 FIY~ 173 (263)
T CHL00200 170 CIYL 173 (263)
T ss_pred cEEE
Confidence 6665
No 232
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.07 E-value=5.2e+02 Score=23.39 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=44.7
Q ss_pred ECCCCHHHHHHHHHHhCCceeceEEee-cC---------------CCceEEEecc-Cc-CCCcEEEEecCCCCchhhHHH
Q 020556 103 SGTANPALSQEIACYMGVELGKINIKR-FA---------------DGEIYVQLQE-SV-RGCDVYLVQPTCPPANENLME 164 (324)
Q Consensus 103 sgss~~~LA~~Ia~~Lg~~l~~i~~~r-Fp---------------DGE~~V~i~e-sV-rG~dV~IVqS~~~p~nd~LmE 164 (324)
.....-.||..+|..||+++.-+.-.. .+ .++....+.. .+ +|+.|+||...-.. -. -
T Consensus 57 ~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~~G~rVLIVDDvvtT-Gg---T 132 (191)
T TIGR01744 57 IEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLAN-GQ---A 132 (191)
T ss_pred EccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhCCCcCEEEEEEehhcc-Ch---H
Confidence 345667999999999998876665442 22 1223333333 23 68899988654221 11 2
Q ss_pred HHHHHHHHHhcCCC
Q 020556 165 LLIMIDACRRASAK 178 (324)
Q Consensus 165 LLl~idAlr~agAk 178 (324)
+.-+++.++++||+
T Consensus 133 ~~a~~~ll~~aGa~ 146 (191)
T TIGR01744 133 AHGLVDIAKQAGAK 146 (191)
T ss_pred HHHHHHHHHHCCCE
Confidence 45667888899984
No 233
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=24.34 E-value=3.2e+02 Score=22.74 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHhCCceeceE-EeecCCCceEEEeccCcCCCcEEEEec
Q 020556 107 NPALSQEIACYMGVELGKIN-IKRFADGEIYVQLQESVRGCDVYLVQP 153 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~i~-~~rFpDGE~~V~i~esVrG~dV~IVqS 153 (324)
...+|+.|++.|+..-.+++ +..-++ +. ....++...|++++.+
T Consensus 14 Te~iA~~ia~~l~~~g~~v~~~~~~~~--~~-~~~~~~~~~d~iilgs 58 (140)
T TIGR01754 14 TEEVAFMIQDYLQKDGHEVDILHRIGT--LA-DAPLDPENYDLVFLGT 58 (140)
T ss_pred HHHHHHHHHHHHhhCCeeEEecccccc--cc-cCcCChhhCCEEEEEc
Confidence 36889999999975544443 222222 10 1122344457777766
No 234
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.79 E-value=3.3e+02 Score=23.15 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=36.1
Q ss_pred CCcEEEEecCCCCchhhHHH-HHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEE
Q 020556 145 GCDVYLVQPTCPPANENLME-LLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLAC 222 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmE-LLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vitv 222 (324)
+-|++.+.++. +.-+| +--++++|++.+...+.+++- |-+. .... ..|..+|+|+++..
T Consensus 53 ~adii~iSsl~----~~~~~~~~~~~~~L~~~g~~~i~vivG-------------G~~~-~~~~-~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 53 DVHVVGVSSLA----GGHLTLVPALRKELDKLGRPDILVVVG-------------GVIP-PQDF-DELKEMGVAEIFGP 112 (132)
T ss_pred CCCEEEEcCch----hhhHHHHHHHHHHHHhcCCCCCEEEEe-------------CCCC-hHhH-HHHHHCCCCEEECC
Confidence 56888888774 33343 556788899988766655542 1111 1112 33677899888754
No 235
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=23.68 E-value=5.4e+02 Score=23.08 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHhCCceec-eEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEE
Q 020556 105 TANPALSQEIACYMGVELGK-INIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 183 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~-i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlV 183 (324)
..|.++.++|++..++++.- =-+....|=+..+ + .|.|.+++.+..- .| .-++.+++++.+..+|.+-
T Consensus 59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~---~--~Gad~vvigs~~l-~d-----p~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLL---D--LGVSRVIIGTAAV-KN-----PELVKELLKEYGGERIVVG 127 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH---H--cCCCEEEECchHH-hC-----hHHHHHHHHHcCCceEEEE
Confidence 34678899998887654311 0011111111111 1 3778777765432 12 2335666667666677666
Q ss_pred EcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEE
Q 020556 184 IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (324)
Q Consensus 184 iPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVV 263 (324)
+-+-...-..+........+...+++.++..|++.++..|....+.. ..+ + ..+.+.+.+. .+-++++
T Consensus 128 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~---~g~--~----~~~i~~i~~~---~~ipvi~ 195 (234)
T cd04732 128 LDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL---SGP--N----FELYKELAAA---TGIPVIA 195 (234)
T ss_pred EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc---CCC--C----HHHHHHHHHh---cCCCEEE
Confidence 55422100000011123456667899999999999999988765443 211 1 2334445443 3567888
Q ss_pred eCCCCchHHHHHHHHHcCCCCEEEE
Q 020556 264 SPDVGGVARARAFAKKLSDAPLAIV 288 (324)
Q Consensus 264 sPD~Ga~kRA~~~A~~L~~~~~~~~ 288 (324)
+=+....+-++.+-+ .| ++-+++
T Consensus 196 ~GGi~~~~di~~~~~-~G-a~gv~v 218 (234)
T cd04732 196 SGGVSSLDDIKALKE-LG-VAGVIV 218 (234)
T ss_pred ecCCCCHHHHHHHHH-CC-CCEEEE
Confidence 877777666666544 44 444443
No 236
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.67 E-value=4.3e+02 Score=24.32 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCC-ceeceEEeecCC-----CceEEEec--cC-cCCCcEEEEecCCC
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGV-ELGKINIKRFAD-----GEIYVQLQ--ES-VRGCDVYLVQPTCP 156 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~-~l~~i~~~rFpD-----GE~~V~i~--es-VrG~dV~IVqS~~~ 156 (324)
+...+|--+.+.--+|.-||..||+ ++.-+.+..+.+ ||..++-. -+ ++|++|+||.-...
T Consensus 29 ~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~D 98 (192)
T COG2236 29 KPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVD 98 (192)
T ss_pred CCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccC
Confidence 3456666677888899999999998 788888888765 34455443 33 78999999987643
No 237
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=23.45 E-value=2.8e+02 Score=29.08 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEE
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlVi 184 (324)
...-.||..+|..||.++.-+.-..=..|+..+.-..-.+|++|+||...-.. -..+ +-.++.+|++|+ .|..++
T Consensus 353 ~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~~~ieG~~~~G~rVlIVDDViTT-GgSi---~eaie~l~~aG~-~V~~v~ 427 (477)
T PRK05500 353 YGSLPTATGLALHLHHPMIFPRKEVKAHGTRRLIEGNFHPGETVVVVDDILIT-GKSV---MEGAEKLKSAGL-NVRDIV 427 (477)
T ss_pred cchHHHHHHHHHHhCCCEEEEecCcCccCCCceEecCCCCcCEEEEEEecccc-CHHH---HHHHHHHHHCCC-EEEEEE
Confidence 34568999999999998743322221256655433322378899998654321 2334 445688888886 444444
Q ss_pred cCC
Q 020556 185 PYF 187 (324)
Q Consensus 185 PYl 187 (324)
-.+
T Consensus 428 vlV 430 (477)
T PRK05500 428 VFI 430 (477)
T ss_pred EEE
Confidence 333
No 238
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.34 E-value=6.8e+02 Score=24.16 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEee-cCCCce--------------EEEec-cC-cCCCcEEEEecCCCCchhhHHHHH
Q 020556 104 GTANPALSQEIACYMGVELGKINIKR-FADGEI--------------YVQLQ-ES-VRGCDVYLVQPTCPPANENLMELL 166 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~r-FpDGE~--------------~V~i~-es-VrG~dV~IVqS~~~p~nd~LmELL 166 (324)
....-.||..+|..||+++.-+.-.. ...|+. ...+. .. .+|+.|+||...-.. -. -+.
T Consensus 136 etkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~T-Gg---Ti~ 211 (268)
T TIGR01743 136 ATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKA-GG---TIN 211 (268)
T ss_pred ccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeeccc-CH---HHH
Confidence 35677999999999999876554322 112321 11111 12 368888888543221 11 245
Q ss_pred HHHHHHHhcCCC
Q 020556 167 IMIDACRRASAK 178 (324)
Q Consensus 167 l~idAlr~agAk 178 (324)
-+++.++++|++
T Consensus 212 a~i~Ll~e~Ga~ 223 (268)
T TIGR01743 212 GMINLLDEFDAE 223 (268)
T ss_pred HHHHHHHHCCCE
Confidence 567778888874
No 239
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.24 E-value=2.2e+02 Score=26.01 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhC--C---ceeceEEeecCCCceEEEeccC--------------cCCCcEEEEecCCC
Q 020556 96 NNRIKLFSGTANPALSQEIACYMG--V---ELGKINIKRFADGEIYVQLQES--------------VRGCDVYLVQPTCP 156 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg--~---~l~~i~~~rFpDGE~~V~i~es--------------VrG~dV~IVqS~~~ 156 (324)
.+++.++.--.+-..|+.++..|. + +++...+.-..|..+...+..+ .+-.||+|+=|.+.
T Consensus 41 ~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~~gDvli~iS~SG 120 (196)
T PRK10886 41 GNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRG 120 (196)
T ss_pred CCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 456666643345577888888763 2 2222222222333332222212 34458888877654
Q ss_pred CchhhHHHHHHHHHHHHhcCCCeEEE
Q 020556 157 PANENLMELLIMIDACRRASAKNITA 182 (324)
Q Consensus 157 p~nd~LmELLl~idAlr~agAkrItl 182 (324)
. +++ ++-+++.+|+.|++-|.+
T Consensus 121 ~-s~~---v~~a~~~Ak~~G~~vI~I 142 (196)
T PRK10886 121 N-SRD---IVKAVEAAVTRDMTIVAL 142 (196)
T ss_pred C-CHH---HHHHHHHHHHCCCEEEEE
Confidence 3 454 466778899999875543
No 240
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=23.18 E-value=3.1e+02 Score=21.58 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCc
Q 020556 203 AAKLVANLITEAGADRVLACDLHS 226 (324)
Q Consensus 203 sak~vA~lL~~~G~d~VitvDlHs 226 (324)
++..+.++++. +.++.+|.-.
T Consensus 2 s~~~l~~~l~~---~~~~iiDvR~ 22 (118)
T cd01449 2 TAEEVLANLDS---GDVQLVDARS 22 (118)
T ss_pred CHHHHHHhcCC---CCcEEEeCCC
Confidence 44555556543 3578899865
No 241
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.14 E-value=6.1e+02 Score=23.53 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeeh
Q 020556 164 ELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQ 243 (324)
Q Consensus 164 ELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~ 243 (324)
..+-++..+|+..-..+ .++-|+.- .++ ....-+.+.+..+|+|.|+..|+|-.+ .
T Consensus 63 ~~~~~~~~vr~~~~~pv-~lm~y~n~-----~~~----~G~~~fi~~~~~aG~~giiipDl~~ee--------------~ 118 (242)
T cd04724 63 DVLELVKEIRKKNTIPI-VLMGYYNP-----ILQ----YGLERFLRDAKEAGVDGLIIPDLPPEE--------------A 118 (242)
T ss_pred HHHHHHHHHhhcCCCCE-EEEEecCH-----HHH----hCHHHHHHHHHHCCCcEEEECCCCHHH--------------H
Confidence 45667777776531123 34444320 000 112346777778899999999998432 2
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHH
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAK 278 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~ 278 (324)
..+.+++++. ..+..++++|.. ..+|.+.+++
T Consensus 119 ~~~~~~~~~~--g~~~i~~i~P~T-~~~~i~~i~~ 150 (242)
T cd04724 119 EEFREAAKEY--GLDLIFLVAPTT-PDERIKKIAE 150 (242)
T ss_pred HHHHHHHHHc--CCcEEEEeCCCC-CHHHHHHHHh
Confidence 3445555554 234455567666 4566677766
No 242
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=23.08 E-value=4.2e+02 Score=23.66 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCceEE------------Eecc-Cc-CCCcEEEEecCCCCchhhHHHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFADGEIYV------------QLQE-SV-RGCDVYLVQPTCPPANENLMELLIMID 170 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V------------~i~e-sV-rG~dV~IVqS~~~p~nd~LmELLl~id 170 (324)
...-.||..+|.+||+++..+.-.+.--.|.+. .+.. .+ .|+.|+||...-.. -. -+.-+++
T Consensus 62 a~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaT-Gg---T~~a~~~ 137 (179)
T COG0503 62 ARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLAT-GG---TALALIE 137 (179)
T ss_pred cccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhc-Ch---HHHHHHH
Confidence 445689999999999887766553333322221 1111 12 47788887543221 11 2456677
Q ss_pred HHHhcCCC
Q 020556 171 ACRRASAK 178 (324)
Q Consensus 171 Alr~agAk 178 (324)
.++++|++
T Consensus 138 Ll~~~ga~ 145 (179)
T COG0503 138 LLEQAGAE 145 (179)
T ss_pred HHHHCCCE
Confidence 78888875
No 243
>PRK13670 hypothetical protein; Provisional
Probab=22.74 E-value=1.6e+02 Score=29.90 Aligned_cols=48 Identities=13% Similarity=0.373 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHH----HHHHhCCCeEEE
Q 020556 162 LMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVAN----LITEAGADRVLA 221 (324)
Q Consensus 162 LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~----lL~~~G~d~Vit 221 (324)
|+...-=+..+.+.|+ ...+++|+. |+.| ++..+++ +|+.+|++.|++
T Consensus 49 i~~~~~R~~~a~~~Gv-D~vielpf~-~a~~----------sae~F~~~aV~iL~~l~v~~lv~ 100 (388)
T PRK13670 49 IVDKWTRAKMALENGV-DLVVELPFL-YSVQ----------SADFFAEGAVSILDALGVDSLVF 100 (388)
T ss_pred CCCHHHHHHHHHHcCC-CEEEEeCCc-hHhC----------CHHHHHHhHHHHHHHcCCCEEEE
Confidence 5545555566778898 455799999 8886 4666776 778889887764
No 244
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.59 E-value=4.1e+02 Score=21.36 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEE
Q 020556 104 GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 183 (324)
Q Consensus 104 gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlV 183 (324)
..+=.+|-++|+++||.... +++-..+...++= |.-| ++.+ +.+|.|-.. -+|.+|-++|.+.
T Consensus 20 s~~~~~L~~~I~~Rl~~d~~-------~~~~~~L~YlDDE-gD~V-llT~-----D~DL~e~v~---iar~~g~~~v~L~ 82 (86)
T cd06409 20 SESLEELRTLISQRLGDDDF-------ETHLYALSYVDDE-GDIV-LITS-----DSDLVAAVL---VARSAGLKKLDLH 82 (86)
T ss_pred CCCHHHHHHHHHHHhCCccc-------cCCcccEEEEcCC-CCEE-EEec-----cchHHHHHH---HHHHcCCCEEEEE
Confidence 33456999999999998653 2444555555442 4444 4432 567777544 4778888888877
Q ss_pred Ec
Q 020556 184 IP 185 (324)
Q Consensus 184 iP 185 (324)
+-
T Consensus 83 v~ 84 (86)
T cd06409 83 LH 84 (86)
T ss_pred Ee
Confidence 63
No 245
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=22.46 E-value=3.4e+02 Score=22.88 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=35.3
Q ss_pred CcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccc
Q 020556 142 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADR 194 (324)
Q Consensus 142 sVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR 194 (324)
.+.|.|+++..-. ++.. +.-..-.+++++++++++++.++=..-.|...+.
T Consensus 57 al~~~d~vi~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~ 107 (183)
T PF13460_consen 57 ALKGADAVIHAAG-PPPK-DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPG 107 (183)
T ss_dssp HHTTSSEEEECCH-STTT-HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTS
T ss_pred hhhhcchhhhhhh-hhcc-cccccccccccccccccccceeeeccccCCCCCc
Confidence 3457887765543 2223 3555678899999999999988777777764444
No 246
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=22.39 E-value=77 Score=33.05 Aligned_cols=133 Identities=22% Similarity=0.279 Sum_probs=50.2
Q ss_pred CEEEEE----CCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHH
Q 020556 98 RIKLFS----GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACR 173 (324)
Q Consensus 98 ~~~Ifs----gss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr 173 (324)
++.|+. |++.--|..-.|+.++-.+..+-+..|..++..-.-.++.-..++ +.+. -|++-++|
T Consensus 238 ~~Lii~GalvGaSG~iLt~iMc~aMNRsl~~Vl~g~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~a~~l------- 304 (463)
T PF02233_consen 238 NLLIIAGALVGASGAILTYIMCKAMNRSLINVLFGGFGASSSAAAGKASAEEGEV---KEIS---AEEVAEML------- 304 (463)
T ss_dssp ------------------------------------------------------S----BES---HHHHHHHH-------
T ss_pred hHHHHhhHHHHHhHHHHHHHHhhccCCCHHHheecccCCCCccccCccccccCcc---cccC---HHHHHHHH-------
Confidence 455544 577789999999999999999999999887532221111101111 2221 24444433
Q ss_pred hcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccc-------cCCccceeeehHHH
Q 020556 174 RASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY-------FDIPVDHVYCQPVI 246 (324)
Q Consensus 174 ~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~f-------F~ipv~nL~~~~~l 246 (324)
..|++| +++|=|+-+=.-- --..+.++++|++.|++--+.+.|=..+..|. .++|-|.+...+.+
T Consensus 305 -~~A~~V-vIVPGYGmAvAqA------Q~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdei 376 (463)
T PF02233_consen 305 -ANAKKV-VIVPGYGMAVAQA------QHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEI 376 (463)
T ss_dssp -HH-SEE-EEEESHHHHHCTT------HHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHH
T ss_pred -HhcCce-EEecCchHHHHHH------HHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhc
Confidence 245677 5888777654311 13478899999999999888888777777764 46899999888776
Q ss_pred HHHHH
Q 020556 247 LDYLA 251 (324)
Q Consensus 247 ~~yl~ 251 (324)
-+.+.
T Consensus 377 N~~f~ 381 (463)
T PF02233_consen 377 NPDFP 381 (463)
T ss_dssp GGGGG
T ss_pred ccchh
Confidence 55544
No 247
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.31 E-value=3.9e+02 Score=24.75 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=47.1
Q ss_pred CEEEEECCC--CHHHHHHHHHHhCCcee-ceEEeecCC--CceEEEeccCcCCCcEEEEecCCCCchhhHHHHHHHHHHH
Q 020556 98 RIKLFSGTA--NPALSQEIACYMGVELG-KINIKRFAD--GEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDAC 172 (324)
Q Consensus 98 ~~~Ifsgss--~~~LA~~Ia~~Lg~~l~-~i~~~rFpD--GE~~V~i~esVrG~dV~IVqS~~~p~nd~LmELLl~idAl 172 (324)
+.-++.|.+ .-.+|..+|.+|. ... -+...+++. |+..........|+.|+||...-.- -..+ +-.++++
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l~-~~~~~~~~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTT-G~Si---~eai~~l 135 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALALA-HLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITT-GGSI---LEAVEAL 135 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHhc-cCCcEEEEeceeccCCCcceeEecCCCCCEEEEEEecccC-CHhH---HHHHHHH
Confidence 345556655 5689999999995 221 445555554 5533333334489999998754321 2334 4567899
Q ss_pred HhcCCC
Q 020556 173 RRASAK 178 (324)
Q Consensus 173 r~agAk 178 (324)
|++|+.
T Consensus 136 ~~~G~~ 141 (201)
T COG0461 136 REAGAE 141 (201)
T ss_pred HHcCCe
Confidence 999984
No 248
>PRK11249 katE hydroperoxidase II; Provisional
Probab=21.99 E-value=2.8e+02 Score=30.81 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecC-----CCceEEEe------ccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHH
Q 020556 105 TANPALSQEIACYMGVELGKINIKRFA-----DGEIYVQL------QESVRGCDVYLVQPTCPPANENLMELLIMIDACR 173 (324)
Q Consensus 105 ss~~~LA~~Ia~~Lg~~l~~i~~~rFp-----DGE~~V~i------~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr 173 (324)
.-+.+|+++||+.||+++-+.....++ |.+..-.+ ..++.|+.|-|+-.- .-+..|+.-+.++++
T Consensus 546 ~vd~~l~~~va~~l~~~~~~~~~~~~~~~~~~~~~~s~als~~~~~~~~~~gRKIaILVaD----G~d~~ev~~~~daL~ 621 (752)
T PRK11249 546 HIDLTLAQAVAENLGIPLTDEQLNITPPPDVNGLKKDPALSLYAIPDGDIKGRKVAILLND----GVDAADLLAILKALK 621 (752)
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccCCCCcCCCCCCcchhccCCCCCCccccEEEEEecC----CCCHHHHHHHHHHHH
Confidence 456799999999999965443111111 21111111 346788888877542 245668889999999
Q ss_pred hcCCCeEEEEEcCCCcc
Q 020556 174 RASAKNITAVIPYFGYA 190 (324)
Q Consensus 174 ~agAkrItlViPYlpYa 190 (324)
++|+ .+.+|-|-.+.-
T Consensus 622 ~AGa-~V~VVSp~~G~V 637 (752)
T PRK11249 622 AKGV-HAKLLYPRMGEV 637 (752)
T ss_pred HCCC-EEEEEECCCCeE
Confidence 9997 777888866543
No 249
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=21.81 E-value=3.3e+02 Score=27.80 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=35.9
Q ss_pred cEEEEecCCC-----CchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCC
Q 020556 147 DVYLVQPTCP-----PANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA 216 (324)
Q Consensus 147 dV~IVqS~~~-----p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~ 216 (324)
||+|+-+++. +..+.-.+ +++.+++.=.+--+++||.|+..| ++-++.+|...|.
T Consensus 182 DvLI~EsTYg~~~~~~r~~~e~~---f~~~v~~~l~~GG~vlipafa~gr------------aQEll~~L~~~~~ 241 (427)
T COG1236 182 DVLIVESTYGDRLHPNRDEVERR---FIESVKAALERGGTVLIPAFALGR------------AQELLLILRELGF 241 (427)
T ss_pred cEEEEecccCCccCCCHHHHHHH---HHHHHHHHHhCCCEEEEecccccH------------HHHHHHHHHHHhc
Confidence 9999999863 22333333 555555543344678999999987 4556677777665
No 250
>PRK07534 methionine synthase I; Validated
Probab=21.75 E-value=6.6e+02 Score=24.79 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhC
Q 020556 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 215 (324)
Q Consensus 145 G~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G 215 (324)
|-|++++-++ .++-|+..++.++++.+.- +.+= |-. +.+-+...|+++ ..+++.++..|
T Consensus 144 gvD~l~~ET~-----p~l~E~~a~~~~~~~~~~P-v~vS---ft~-~~~g~l~~G~~~--~~~~~~~~~~~ 202 (336)
T PRK07534 144 GADVLWVETI-----SAPEEIRAAAEAAKLAGMP-WCGT---MSF-DTAGRTMMGLTP--ADLADLVEKLG 202 (336)
T ss_pred CCCEEEEecc-----CCHHHHHHHHHHHHHcCCe-EEEE---EEE-CCCCeeCCCCcH--HHHHHHHHhcC
Confidence 5799999876 3488888999999986532 1111 111 344455667775 33555555443
No 251
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=21.72 E-value=3.4e+02 Score=26.11 Aligned_cols=78 Identities=24% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeE-EEeCCCCchHHHHHHHHHcCC
Q 020556 204 AKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLV-VVSPDVGGVARARAFAKKLSD 282 (324)
Q Consensus 204 ak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~v-VVsPD~Ga~kRA~~~A~~L~~ 282 (324)
|+-=|+.|+..|+|.||.=+.|..-... +++.+.+.++..++..++... ...--+ ++.-|.-+ |-.+|...|
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~~~~-~~p~GvnvL~nd~~a---al~iA~a~g- 102 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLKSDV-SIPLGINVLRNDAVA---ALAIAMAVG- 102 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHHHhc-CCCeeeeeecCCCHH---HHHHHHHhC-
Confidence 3334678899999999985544311100 233344666666776666542 111111 34434432 444555554
Q ss_pred CCEEEE
Q 020556 283 APLAIV 288 (324)
Q Consensus 283 ~~~~~~ 288 (324)
++++-+
T Consensus 103 a~FIRv 108 (257)
T TIGR00259 103 AKFIRV 108 (257)
T ss_pred CCEEEE
Confidence 455433
No 252
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.63 E-value=94 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCeEEEEEcCCCc
Q 020556 168 MIDACRRASAKNITAVIPYFGY 189 (324)
Q Consensus 168 ~idAlr~agAkrItlViPYlpY 189 (324)
+++.+++.|.++| +|+|+|+.
T Consensus 50 ~l~~l~~~g~~~v-vvvPl~~~ 70 (101)
T cd03409 50 AIRELAEEGYQRV-VIVPLAPV 70 (101)
T ss_pred HHHHHHHcCCCeE-EEEeCccc
Confidence 4667888898887 58999987
No 253
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=21.20 E-value=2.6e+02 Score=29.30 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=39.4
Q ss_pred CcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCC
Q 020556 146 CDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH 225 (324)
Q Consensus 146 ~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlH 225 (324)
+.++ |.+.+.+ |-+--.++|..+|++.|. .+..++|. |... |=.++...+-++.. -+.+-+||+|.=
T Consensus 55 ~~I~-I~gh~D~--DGi~S~~~L~~~L~~~g~-~v~~~ip~----r~~~----~yg~~~~~i~~~~~-~~~~LiI~vD~G 121 (539)
T TIGR00644 55 EKIL-IFGDYDV--DGITSTAILVEFLKDLGV-NVDYYIPN----RITE----GYGLSPEALREAIE-NGVSLIITVDNG 121 (539)
T ss_pred CeEE-EEEccCC--CcHHHHHHHHHHHHHCCC-ceEEEeCC----CCcc----cCCCCHHHHHHHHh-cCCCEEEEeCCC
Confidence 3444 4444433 678899999999999995 66777763 2111 11122233333322 356677777766
Q ss_pred chh
Q 020556 226 SGQ 228 (324)
Q Consensus 226 s~~ 228 (324)
+.+
T Consensus 122 ~~~ 124 (539)
T TIGR00644 122 ISA 124 (539)
T ss_pred ccc
Confidence 544
No 254
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.14 E-value=3.9e+02 Score=26.57 Aligned_cols=56 Identities=9% Similarity=0.126 Sum_probs=26.0
Q ss_pred chhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCC
Q 020556 158 ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGAD 217 (324)
Q Consensus 158 ~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d 217 (324)
+||+.=++--+++-++.... +|.+ |||-|+.-. .+++-..=..+.+.+.|...|+.
T Consensus 261 vNDs~e~~~~L~~ll~~l~~-~vnl-IPyn~~~~~--~~~~ps~e~i~~f~~~L~~~gi~ 316 (349)
T PRK14463 261 LNDSLEDAKRLVRLLSDIPS-KVNL-IPFNEHEGC--DFRSPTQEAIDRFHKYLLDKHVT 316 (349)
T ss_pred CCCCHHHHHHHHHHHhccCc-eEEE-EecCCCCCC--CCCCCCHHHHHHHHHHHHHCCce
Confidence 34444444445555554443 4554 777666432 22222222344455556655543
No 255
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=21.02 E-value=4.3e+02 Score=20.99 Aligned_cols=38 Identities=32% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCC--chHHHHHHHHHcC
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVG--GVARARAFAKKLS 281 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~G--a~kRA~~~A~~L~ 281 (324)
..+.+++.......+.+||+.-..| ...++..+.+.+|
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G 104 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFG 104 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcC
Confidence 3455555543334566777776665 3333333444455
No 256
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=21.00 E-value=2e+02 Score=23.64 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHhCCceeceEEeecCCCceEEEeccCcCCCc-EEEEecCC----CCchhh--HHHHHHHHH-HHH--hcC
Q 020556 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCD-VYLVQPTC----PPANEN--LMELLIMID-ACR--RAS 176 (324)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i~esVrG~d-V~IVqS~~----~p~nd~--LmELLl~id-Alr--~ag 176 (324)
...+|+.|++.|.-.-.++.+....+-+.. .+++...+ ++++.+++ +|.|.. +.+++.... ..+ ...
T Consensus 10 te~~A~~ia~~l~~~g~~~~~~~~~~~~~~---~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
T PF00258_consen 10 TEKMAEAIAEGLRERGVEVRVVDLDDFDDS---PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLK 86 (143)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEGGGSCHH---HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCT
T ss_pred HHHHHHHHHHHHHHcCCceeeechhhhhhh---hhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccccccccc
Confidence 458999999998643323344443333222 33444444 44555533 343432 334444331 111 122
Q ss_pred CCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEE
Q 020556 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (324)
Q Consensus 177 AkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~Vi 220 (324)
-++. +|+=...|.-. +=--.+|.+.+.|+.+|+.++.
T Consensus 87 ~~~~-avfg~Gd~~~~------~f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 87 GKKY-AVFGLGDSGYG------GFCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp TCEE-EEEEEEETTSS------TTTHHHHHHHHHHHHTTEEEES
T ss_pred ccee-eeeecCCccch------hhhhHHHHHHHHHHHCCCEEEE
Confidence 2333 34432221110 0114589999999999986664
No 257
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.92 E-value=3.5e+02 Score=25.54 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeeh
Q 020556 164 ELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQ 243 (324)
Q Consensus 164 ELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~ 243 (324)
.+|-++.++|+...+ +-++ .|.|.-- =-.....-+.+.+..+|+|.|+..|+ |.++ .
T Consensus 73 ~~~~~v~~ir~~~~~-~plv--~m~Y~Np------i~~~G~e~f~~~~~~aGvdgviipDl-----------p~ee---~ 129 (256)
T TIGR00262 73 KCFELLKKVRQKHPN-IPIG--LLTYYNL------IFRKGVEEFYAKCKEVGVDGVLVADL-----------PLEE---S 129 (256)
T ss_pred HHHHHHHHHHhcCCC-CCEE--EEEeccH------HhhhhHHHHHHHHHHcCCCEEEECCC-----------ChHH---H
Confidence 566777778754222 1111 3444321 00122344677778899999999985 3332 2
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHc
Q 020556 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKL 280 (324)
Q Consensus 244 ~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L 280 (324)
..+.++++++ ..+-..+|+|.. ..+|.+.+++..
T Consensus 130 ~~~~~~~~~~--gl~~i~lv~P~T-~~eri~~i~~~~ 163 (256)
T TIGR00262 130 GDLVEAAKKH--GVKPIFLVAPNA-DDERLKQIAEKS 163 (256)
T ss_pred HHHHHHHHHC--CCcEEEEECCCC-CHHHHHHHHHhC
Confidence 4556666665 234456888887 467888888755
No 258
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=20.74 E-value=8.4e+02 Score=24.24 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=42.0
Q ss_pred CCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEc
Q 020556 144 RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACD 223 (324)
Q Consensus 144 rG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViPYlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvD 223 (324)
.|+|+.||... ..+-+.+-.++.|+..|. ++++|=+.. =.|+..+.+.+.++. .++|+++|
T Consensus 232 ~G~di~Iia~G-----s~~~~aleAa~~L~~~Gi-~v~vI~~~~-----------l~Pld~e~i~~~~~~--~~~IvvvE 292 (355)
T PTZ00182 232 EGKDVTIVGYG-----SQVHVALKAAEELAKEGI-SCEVIDLRS-----------LRPWDRETIVKSVKK--TGRCVIVH 292 (355)
T ss_pred CCCCEEEEEeC-----HHHHHHHHHHHHHHhCCC-cEEEEEEee-----------CCCCCHHHHHHHHhc--CCEEEEEE
Confidence 37898888764 234455556666766664 455542211 246777777788775 47999999
Q ss_pred CCch
Q 020556 224 LHSG 227 (324)
Q Consensus 224 lHs~ 227 (324)
=|..
T Consensus 293 E~~~ 296 (355)
T PTZ00182 293 EAPP 296 (355)
T ss_pred eCCC
Confidence 8874
No 259
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.70 E-value=2e+02 Score=21.15 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=40.8
Q ss_pred EEECCCCHHHHHHHHHHhCCceeceEEeecCCCceEEEe-ccCcCCCcEEEEecCCCCchhhHHHHHHHHHHHHhcCCCe
Q 020556 101 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQL-QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKN 179 (324)
Q Consensus 101 Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpDGE~~V~i-~esVrG~dV~IVqS~~~p~nd~LmELLl~idAlr~agAkr 179 (324)
+++.-++..+|...+..|..-.+ ....-.++.+..... ...+..+|++|+=|.+.. +.+ +.-+++.+|+.|++-
T Consensus 3 i~g~G~s~~~a~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~-t~~---~~~~~~~a~~~g~~i 77 (87)
T cd04795 3 VIGIGGSGAIAAYFALELLELTG-IEVVALIATELEHASLLSLLRKGDVVIALSYSGR-TEE---LLAALEIAKELGIPV 77 (87)
T ss_pred EEEcCHHHHHHHHHHHHHhcccC-CceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCC-CHH---HHHHHHHHHHcCCeE
Confidence 34433555677777766654312 222333344332211 223445688877766532 333 445668888999865
Q ss_pred EEEE
Q 020556 180 ITAV 183 (324)
Q Consensus 180 ItlV 183 (324)
|.+.
T Consensus 78 i~it 81 (87)
T cd04795 78 IAIT 81 (87)
T ss_pred EEEe
Confidence 5443
No 260
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=20.64 E-value=7e+02 Score=23.71 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceEEeecCC-------CceEEEeccCcCCCcEEEEecCC----CCchhhHHH
Q 020556 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFAD-------GEIYVQLQESVRGCDVYLVQPTC----PPANENLME 164 (324)
Q Consensus 96 ~~~~~Ifsgss~~~LA~~Ia~~Lg~~l~~i~~~rFpD-------GE~~V~i~esVrG~dV~IVqS~~----~p~nd~LmE 164 (324)
+.++-|+.||.=-.|+..+....-++.++ +-.||. |+++. ..+.|++|+++|+.. ..++..+
T Consensus 21 ~~~i~iI~GsGl~~~~~~~~~~~~~~y~~--ip~f~~~~v~gh~~~~~~---G~l~g~~Vv~~~g~~H~yeG~~~~~~-- 93 (272)
T PRK08202 21 KPEIGLILGSGLGALADEIENAVVIPYAD--IPGFPVSTVEGHAGELVL---GRLGGKPVLAMQGRFHYYEGYSMEAV-- 93 (272)
T ss_pred CCCEEEEeCCchhHHHHHhcCcEEEeccc--CCCCCCCCCcCCCceEEE---EEECCEEEEEEccCCcccCCCCHHHH--
Confidence 46788999998777765553331122211 223553 55544 234589999999754 2244433
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 020556 165 LLIMIDACRRASAKNITA 182 (324)
Q Consensus 165 LLl~idAlr~agAkrItl 182 (324)
-.-+.+++..|++.|..
T Consensus 94 -~a~i~~l~~lGv~~II~ 110 (272)
T PRK08202 94 -TFPVRVMKALGVETLIV 110 (272)
T ss_pred -HHHHHHHHHcCCCEEEE
Confidence 45567888999988864
No 261
>PLN02591 tryptophan synthase
Probab=20.60 E-value=3.5e+02 Score=25.67 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhcccccCCccceeeehHHHHHHHHhcCCCCCCeEEEeCCCCchHHHHHHHHHcCCC
Q 020556 204 AKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDA 283 (324)
Q Consensus 204 ak~vA~lL~~~G~d~VitvDlHs~~~~~fF~ipv~nL~~~~~l~~yl~~~~~~~~~~vVVsPD~Ga~kRA~~~A~~L~~~ 283 (324)
..-+.+.+..+|+|-||..|+ |.++ ...+.++++++ +.+...+|+|... .+|.+.+|+.-.
T Consensus 95 ~~~F~~~~~~aGv~GviipDL-----------P~ee---~~~~~~~~~~~--gl~~I~lv~Ptt~-~~ri~~ia~~~~-- 155 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDL-----------PLEE---TEALRAEAAKN--GIELVLLTTPTTP-TERMKAIAEASE-- 155 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC-----------CHHH---HHHHHHHHHHc--CCeEEEEeCCCCC-HHHHHHHHHhCC--
Confidence 445777788899999999985 3332 23455555554 3566677888876 567777877532
Q ss_pred CEEEE
Q 020556 284 PLAIV 288 (324)
Q Consensus 284 ~~~~~ 288 (324)
.++|+
T Consensus 156 gFIY~ 160 (250)
T PLN02591 156 GFVYL 160 (250)
T ss_pred CcEEE
Confidence 45554
No 262
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=20.60 E-value=7.7e+02 Score=27.50 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCceEEEeccCcCCCcE-EEEecCCCCchhhHHHHHHHHHHHHhcCCCeEEEEEc
Q 020556 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDV-YLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 185 (324)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~i~--~~rFpDGE~~V~i~esVrG~dV-~IVqS~~~p~nd~LmELLl~idAlr~agAkrItlViP 185 (324)
..|-.+|..||++...+. +..|.--+-+.++-.. +..+ +|..|... | --.+.-++++++.....++++|+.
T Consensus 797 laAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~--~~~~~iidDsya~--n--p~s~~aaL~~l~~~~~~~~i~VlG 870 (958)
T PRK11929 797 LAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRL--SCGTRIIDDTYNA--N--PDSMRAAIDVLAELPNGPRALVLG 870 (958)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCCceEEEc--CCCcEEEEcCCCC--C--HHHHHHHHHHHHhccCCCEEEEEC
Confidence 457778888998876554 5566533333333221 1233 44443322 2 223334445666543346778887
Q ss_pred CCCcccccccccCCcchhHHHHHHHHHHhCCCeEEEEcCC
Q 020556 186 YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH 225 (324)
Q Consensus 186 YlpYaRQDR~~~~gepisak~vA~lL~~~G~d~VitvDlH 225 (324)
=++=-+ | .+.---+.+++++...+++.|+++--+
T Consensus 871 ~~~e~g-~-----~~~~~h~~~g~~~~~~~~~~vi~~Ge~ 904 (958)
T PRK11929 871 DMLELG-D-----NGPAMHREVGKYARQLGIDALITLGEA 904 (958)
T ss_pred CchhcC-c-----HHHHHHHHHHHHHHHcCCCEEEEECcC
Confidence 543111 1 111112456777777789999998543
Done!