Query 020558
Match_columns 324
No_of_seqs 132 out of 1577
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 3.1E-20 6.8E-25 155.4 -5.1 254 17-317 98-375 (419)
2 KOG4341 F-box protein containi 99.7 2.9E-19 6.3E-24 155.8 -6.7 278 19-323 74-419 (483)
3 PF12937 F-box-like: F-box-lik 98.9 1.4E-09 3E-14 67.8 3.0 35 17-51 1-35 (47)
4 PF00646 F-box: F-box domain; 98.5 3.2E-08 7E-13 61.9 0.7 37 17-53 3-39 (48)
5 smart00256 FBOX A Receptor for 98.4 2.3E-07 4.9E-12 55.8 2.5 34 20-53 1-34 (41)
6 KOG4341 F-box protein containi 98.2 7.4E-08 1.6E-12 85.2 -4.1 68 252-322 318-389 (483)
7 PLN03210 Resistant to P. syrin 98.0 1E-05 2.2E-10 84.2 6.0 84 158-244 627-714 (1153)
8 KOG2120 SCF ubiquitin ligase, 97.8 1.3E-06 2.8E-11 74.4 -2.6 129 163-293 232-375 (419)
9 KOG1909 Ran GTPase-activating 97.8 1E-06 2.2E-11 76.4 -3.8 43 159-201 86-131 (382)
10 KOG3207 Beta-tubulin folding c 97.8 4.7E-06 1E-10 74.4 -0.5 150 161-314 142-310 (505)
11 PLN00113 leucine-rich repeat r 97.8 2.6E-05 5.6E-10 80.2 4.6 145 163-316 116-271 (968)
12 KOG1947 Leucine rich repeat pr 97.7 1.6E-06 3.5E-11 81.6 -4.6 80 162-241 240-328 (482)
13 PLN03210 Resistant to P. syrin 97.5 6E-05 1.3E-09 78.6 3.7 152 163-320 745-908 (1153)
14 PLN00113 leucine-rich repeat r 97.5 7.9E-05 1.7E-09 76.7 4.1 152 158-316 397-582 (968)
15 PF07723 LRR_2: Leucine Rich R 97.5 0.00015 3.3E-09 38.4 3.0 25 166-190 1-26 (26)
16 KOG1947 Leucine rich repeat pr 97.4 9.4E-06 2E-10 76.5 -3.7 128 163-291 186-331 (482)
17 KOG3207 Beta-tubulin folding c 97.3 8.6E-06 1.9E-10 72.8 -5.2 152 162-316 118-282 (505)
18 PF14580 LRR_9: Leucine-rich r 97.2 5.6E-05 1.2E-09 60.9 -1.3 122 163-289 17-148 (175)
19 PF14580 LRR_9: Leucine-rich r 97.1 8.6E-05 1.9E-09 59.8 -0.4 136 177-315 4-150 (175)
20 cd00116 LRR_RI Leucine-rich re 97.1 9.6E-05 2.1E-09 65.7 -0.9 148 165-315 108-288 (319)
21 cd00116 LRR_RI Leucine-rich re 96.9 0.00031 6.7E-09 62.5 0.9 152 163-315 134-317 (319)
22 KOG3665 ZYG-1-like serine/thre 96.8 0.00018 4E-09 70.3 -1.8 114 163-293 146-262 (699)
23 KOG3665 ZYG-1-like serine/thre 96.7 0.00019 4.2E-09 70.1 -2.2 96 166-263 61-182 (699)
24 KOG4194 Membrane glycoprotein 96.7 0.00016 3.5E-09 67.3 -2.6 35 161-199 241-278 (873)
25 KOG4194 Membrane glycoprotein 96.3 0.0017 3.8E-08 60.7 1.5 97 164-263 124-230 (873)
26 KOG0444 Cytoskeletal regulator 95.9 0.00011 2.3E-09 69.0 -8.3 100 213-318 245-352 (1255)
27 PLN03215 ascorbic acid mannose 95.8 0.0063 1.4E-07 54.8 2.5 38 16-53 3-41 (373)
28 KOG0281 Beta-TrCP (transducin 95.7 0.0039 8.4E-08 54.3 0.8 36 14-49 72-111 (499)
29 PRK15386 type III secretion pr 95.6 0.024 5.3E-07 51.7 5.8 88 166-263 73-165 (426)
30 KOG2997 F-box protein FBX9 [Ge 95.3 0.0091 2E-07 51.6 1.9 36 14-49 104-144 (366)
31 PRK15387 E3 ubiquitin-protein 95.1 0.022 4.8E-07 56.5 4.0 13 281-293 342-354 (788)
32 PRK15387 E3 ubiquitin-protein 94.9 0.034 7.4E-07 55.2 4.8 11 281-291 382-392 (788)
33 KOG3864 Uncharacterized conser 94.8 0.0012 2.6E-08 53.5 -4.7 62 163-224 123-187 (221)
34 PF13855 LRR_8: Leucine rich r 94.6 0.038 8.2E-07 36.0 2.9 38 277-314 21-58 (61)
35 smart00367 LRR_CC Leucine-rich 94.3 0.01 2.2E-07 31.4 -0.3 20 304-323 1-20 (26)
36 smart00367 LRR_CC Leucine-rich 94.2 0.03 6.5E-07 29.5 1.4 23 164-186 1-24 (26)
37 PRK15386 type III secretion pr 94.0 0.18 3.9E-06 46.3 6.8 134 164-315 51-187 (426)
38 PF12799 LRR_4: Leucine Rich r 93.9 0.024 5.2E-07 34.3 0.8 35 165-201 1-35 (44)
39 KOG0444 Cytoskeletal regulator 93.6 0.0037 8.1E-08 59.1 -4.6 43 156-200 94-136 (1255)
40 PF13855 LRR_8: Leucine rich r 93.0 0.091 2E-06 34.1 2.5 56 234-292 1-60 (61)
41 KOG1644 U2-associated snRNP A' 92.8 0.25 5.5E-06 40.4 5.2 81 161-244 60-150 (233)
42 KOG3864 Uncharacterized conser 92.2 0.02 4.3E-07 46.7 -1.9 61 168-229 104-167 (221)
43 KOG2982 Uncharacterized conser 91.9 0.039 8.5E-07 47.8 -0.4 62 163-224 69-132 (418)
44 KOG2123 Uncharacterized conser 91.9 0.0027 5.9E-08 54.1 -7.2 16 277-292 84-99 (388)
45 COG5238 RNA1 Ran GTPase-activa 91.7 0.023 5E-07 48.5 -2.0 146 159-316 86-253 (388)
46 KOG0618 Serine/threonine phosp 91.6 0.02 4.4E-07 56.5 -2.7 121 164-293 358-488 (1081)
47 PF13516 LRR_6: Leucine Rich r 90.0 0.18 3.9E-06 25.8 1.1 23 164-186 1-23 (24)
48 KOG0618 Serine/threonine phosp 89.6 0.035 7.5E-07 55.0 -3.1 152 158-316 303-487 (1081)
49 PRK15370 E3 ubiquitin-protein 89.5 0.18 3.9E-06 50.3 1.6 134 165-315 220-356 (754)
50 KOG2982 Uncharacterized conser 89.3 0.023 4.9E-07 49.1 -4.1 150 165-315 45-234 (418)
51 KOG0274 Cdc4 and related F-box 88.3 0.2 4.3E-06 47.9 0.9 38 13-50 104-141 (537)
52 PRK15370 E3 ubiquitin-protein 87.4 0.41 8.8E-06 47.8 2.5 73 165-244 241-314 (754)
53 KOG0617 Ras suppressor protein 86.8 0.011 2.5E-07 46.8 -6.8 39 158-198 49-87 (264)
54 COG4886 Leucine-rich repeat (L 85.4 0.38 8.2E-06 44.2 1.1 140 166-315 141-287 (394)
55 KOG1909 Ran GTPase-activating 84.9 1.3 2.7E-05 39.5 3.9 40 161-200 209-251 (382)
56 KOG1644 U2-associated snRNP A' 84.6 1.3 2.7E-05 36.5 3.6 56 234-290 88-149 (233)
57 PF12799 LRR_4: Leucine Rich r 84.6 0.55 1.2E-05 28.3 1.2 17 277-293 20-36 (44)
58 KOG4658 Apoptotic ATPase [Sign 83.8 1 2.2E-05 45.9 3.4 41 163-203 543-584 (889)
59 PF13013 F-box-like_2: F-box-l 83.8 0.74 1.6E-05 33.9 1.8 30 16-45 21-50 (109)
60 KOG2739 Leucine-rich acidic nu 78.8 1.1 2.5E-05 38.1 1.5 14 250-263 87-100 (260)
61 PLN03150 hypothetical protein; 76.2 1.6 3.4E-05 42.9 1.9 66 158-224 435-501 (623)
62 PF09372 PRANC: PRANC domain; 75.3 2.5 5.4E-05 30.3 2.3 26 14-39 69-94 (97)
63 KOG2739 Leucine-rich acidic nu 75.3 1.1 2.4E-05 38.1 0.5 63 163-225 63-128 (260)
64 PF13306 LRR_5: Leucine rich r 74.5 4.1 8.8E-05 30.4 3.4 35 161-199 8-44 (129)
65 KOG3926 F-box proteins [Amino 71.1 1.4 3E-05 37.6 0.1 53 13-65 198-257 (332)
66 KOG1259 Nischarin, modulator o 67.2 7.3 0.00016 34.2 3.7 39 276-316 302-340 (490)
67 smart00368 LRR_RI Leucine rich 67.0 5.2 0.00011 21.3 1.8 23 165-187 2-24 (28)
68 KOG2123 Uncharacterized conser 66.0 0.18 3.8E-06 43.4 -6.1 61 250-315 37-98 (388)
69 PF13504 LRR_7: Leucine rich r 64.4 4.5 9.8E-05 18.7 1.1 10 191-200 2-11 (17)
70 KOG1259 Nischarin, modulator o 64.0 6 0.00013 34.7 2.5 150 164-320 181-366 (490)
71 KOG4658 Apoptotic ATPase [Sign 57.4 5.8 0.00013 40.6 1.6 67 160-226 712-783 (889)
72 KOG1859 Leucine-rich repeat pr 57.3 1.7 3.7E-05 42.6 -2.0 17 163-179 107-123 (1096)
73 PF13306 LRR_5: Leucine rich r 56.5 31 0.00068 25.4 5.2 74 234-313 35-111 (129)
74 KOG1859 Leucine-rich repeat pr 55.2 0.34 7.4E-06 47.2 -6.9 34 163-199 185-218 (1096)
75 PF00560 LRR_1: Leucine Rich R 53.8 9.8 0.00021 18.8 1.3 9 192-200 2-10 (22)
76 KOG4237 Extracellular matrix p 51.2 7.2 0.00016 35.6 1.0 74 234-312 274-353 (498)
77 PLN03150 hypothetical protein; 48.1 14 0.0003 36.4 2.5 94 214-313 419-523 (623)
78 KOG4408 Putative Mg2+ and Co2+ 46.5 4.7 0.0001 35.6 -0.9 34 17-50 8-41 (386)
79 COG5238 RNA1 Ran GTPase-activa 44.2 15 0.00033 31.9 1.8 24 164-187 29-52 (388)
80 KOG0617 Ras suppressor protein 33.6 2.6 5.6E-05 33.8 -4.0 98 213-318 56-163 (264)
81 PF08387 FBD: FBD; InterPro: 31.3 86 0.0019 19.2 3.4 35 164-198 13-50 (51)
82 PF07735 FBA_2: F-box associat 29.6 83 0.0018 20.5 3.3 32 166-197 33-69 (70)
83 KOG4237 Extracellular matrix p 27.5 16 0.00034 33.5 -0.7 65 250-319 270-335 (498)
84 KOG0531 Protein phosphatase 1, 25.1 27 0.00058 32.4 0.3 78 162-244 115-196 (414)
85 smart00369 LRR_TYP Leucine-ric 23.9 38 0.00082 17.2 0.6 12 165-176 2-13 (26)
86 smart00370 LRR Leucine-rich re 23.9 38 0.00082 17.2 0.6 12 165-176 2-13 (26)
87 COG4829 CatC1 Muconolactone de 22.4 22 0.00048 24.7 -0.6 35 20-54 11-47 (98)
88 TIGR03221 muco_delta muconolac 22.2 21 0.00046 25.1 -0.7 32 19-54 13-46 (90)
89 KOG0472 Leucine-rich repeat pr 20.6 12 0.00027 34.3 -2.7 62 249-316 223-286 (565)
90 PF06881 Elongin_A: RNA polyme 20.1 1.4E+02 0.0031 21.8 3.3 33 15-47 2-34 (109)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.1e-20 Score=155.39 Aligned_cols=254 Identities=20% Similarity=0.214 Sum_probs=156.7
Q ss_pred CCCCChHHHHHHHhcCChhHHHHhhhcccchhh------ccccCceeeEeccccccccchhhHHHHHHHHHHHHHHHHhh
Q 020558 17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKY------LWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLES 90 (324)
Q Consensus 17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~------lw~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 90 (324)
|..|||||+..||+.|+.+|+.+.+.|||||.+ +|.. ++....++.+ +...+.+++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p---------------~~l~~l~~r 159 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP---------------DVLGRLLSR 159 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh---------------hHHHHHHhC
Confidence 788999999999999999999999999999976 4776 7777776665 233333322
Q ss_pred cCCCCccEEEEEEeCCCCCcchHHHHHHHH--HhcCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCCCCCCCCc
Q 020558 91 HKSLSVNEFIIVFDLDDSHESNISHWVYTA--ISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLR 168 (324)
Q Consensus 91 ~~~~~l~~l~l~~~~~~~~~~~v~~wl~~~--~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~L~ 168 (324)
| +.-+++.-.+ .+. ++...++ +..++|+++++...... . .+..-+..|..|+
T Consensus 160 --g--V~v~Rlar~~--~~~---prlae~~~~frsRlq~lDLS~s~it~-------s----------tl~~iLs~C~kLk 213 (419)
T KOG2120|consen 160 --G--VIVFRLARSF--MDQ---PRLAEHFSPFRSRLQHLDLSNSVITV-------S----------TLHGILSQCSKLK 213 (419)
T ss_pred --C--eEEEEcchhh--hcC---chhhhhhhhhhhhhHHhhcchhheeH-------H----------HHHHHHHHHHhhh
Confidence 2 4444432111 111 1222222 33468999986543220 0 0001134688999
Q ss_pred EEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE---ecccCCccEEEEecCCCcceE-----EEecCCccEEE
Q 020558 169 FLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV---VGSLLQLKCLHIDHCNNLEEL-----EISCPSLLSFK 240 (324)
Q Consensus 169 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i---~~~~~~L~~L~i~~c~~l~~l-----~i~~p~L~~L~ 240 (324)
.|.|++.+++|..... ++.-.+|++|++..|.|.+.-.+ -.+|.+|.+|+++.|...... .--.|+|..|+
T Consensus 214 ~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred hccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence 9999999998875555 66678899999999998876332 357789999999999854321 11237888888
Q ss_pred EcceeeEE-------eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEE
Q 020558 241 YFGPEIKL-------HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMF 312 (324)
Q Consensus 241 ~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l 312 (324)
++|+...+ ....||+|+++++.... ...+..+ ..+..++.|++|.++-++......+-. ...|.|.+|.+
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCF-QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeecccccc-ccCchHH-HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe
Confidence 88875432 24456777666666411 1111222 223456666666666555311112222 55666666666
Q ss_pred Eecch
Q 020558 313 MLVHL 317 (324)
Q Consensus 313 ~~~~~ 317 (324)
..|-.
T Consensus 371 ~g~vs 375 (419)
T KOG2120|consen 371 FGCVS 375 (419)
T ss_pred ccccC
Confidence 55443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.68 E-value=2.9e-19 Score=155.80 Aligned_cols=278 Identities=18% Similarity=0.212 Sum_probs=163.8
Q ss_pred CCChHHHHHHHhcCChhHHHHhhhcccchhhc------cccCceeeEeccccccccchhhHHHHHHHHHHHHHHHHhhcC
Q 020558 19 RLPDDILVNIISRLTLKEAARTSVLSSRWKYL------WTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHK 92 (324)
Q Consensus 19 ~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l------w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 92 (324)
.||++++.+|||+|+++.+.|++++|+.|... |..+....|. .++...|-..+.+++
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~-----------------rDv~g~VV~~~~~Rc 136 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQ-----------------RDVDGGVVENMISRC 136 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcch-----------------hcCCCcceehHhhhh
Confidence 59999999999999999999999999999864 7765434442 222244555666778
Q ss_pred CCCccEEEEEEeCCCCCcchHHHHHHHH-HhcCceEEEEEcCCCCCCCCCCcceeeC--CCCcccccCCC----------
Q 020558 93 SLSVNEFIIVFDLDDSHESNISHWVYTA-ISKRAQKFELNLFPALCWPPASGIYEFS--QGCYDYLKSPC---------- 159 (324)
Q Consensus 93 ~~~l~~l~l~~~~~~~~~~~v~~wl~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~l~l~~---------- 159 (324)
|+.++++++++.....+.. .-..+ .++++++|.+..+... .+.....+. |..++.+.+.+
T Consensus 137 gg~lk~LSlrG~r~v~~ss----lrt~~~~CpnIehL~l~gc~~i---Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSS----LRTFASNCPNIEHLALYGCKKI---TDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ccccccccccccccCCcch----hhHHhhhCCchhhhhhhcceec---cHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 8889999998875443322 22222 3458999988666533 111111111 11111111110
Q ss_pred -CCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcce-----------------------------EEE
Q 020558 160 -GLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLR-----------------------------LKV 208 (324)
Q Consensus 160 -~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-----------------------------l~i 208 (324)
-..+|++|++|+++++. +++++++.+..+|..++.+.+.+|...+. +.+
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 12345666666666655 55555555555555555555555542210 011
Q ss_pred ecccCCccEEEEecCCCcc-----eEEEecCCccEEEEcceee------EEeeCCCCCceEEEEecccCCcccceecccc
Q 020558 209 VGSLLQLKCLHIDHCNNLE-----ELEISCPSLLSFKYFGPEI------KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIV 277 (324)
Q Consensus 209 ~~~~~~L~~L~i~~c~~l~-----~l~i~~p~L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~ 277 (324)
...|.+|+.|..++|..+. .+.-++++|+.+.+.++.. ...-.+++.|+++.+...... .+..+.++.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-~d~tL~sls 368 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-TDGTLASLS 368 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-hhhhHhhhc
Confidence 1234555555555555432 2444678888887766631 123446788888877752211 222455667
Q ss_pred ccCCCceEEEEEeeecceecc-----cCC--CCCCcceeEEEEecchhhhccC
Q 020558 278 NYFPQLKTLELHVELNEEILQ-----FPE--CDLPELRHLMFMLVHLIVAASL 323 (324)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~-----~~~--~~~~~L~~L~l~~~~~i~~~~~ 323 (324)
.+|+.|+.|.++.+.. +.+ +.. .....|..|+++.|+.|+++.|
T Consensus 369 ~~C~~lr~lslshce~--itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCEL--ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred cCCchhccCChhhhhh--hhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 7899999999885553 222 222 5667888888888888888765
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.88 E-value=1.4e-09 Score=67.82 Aligned_cols=35 Identities=37% Similarity=0.695 Sum_probs=30.8
Q ss_pred CCCCChHHHHHHHhcCChhHHHHhhhcccchhhcc
Q 020558 17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLW 51 (324)
Q Consensus 17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw 51 (324)
|..||+||+.+||++|+.+|+++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999754
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.49 E-value=3.2e-08 Score=61.92 Aligned_cols=37 Identities=43% Similarity=0.660 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHHhcCChhHHHHhhhcccchhhcccc
Q 020558 17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTY 53 (324)
Q Consensus 17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw~~ 53 (324)
|++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987665
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.38 E-value=2.3e-07 Score=55.82 Aligned_cols=34 Identities=41% Similarity=0.670 Sum_probs=31.6
Q ss_pred CChHHHHHHHhcCChhHHHHhhhcccchhhcccc
Q 020558 20 LPDDILVNIISRLTLKEAARTSVLSSRWKYLWTY 53 (324)
Q Consensus 20 LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw~~ 53 (324)
||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987544
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=7.4e-08 Score=85.22 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc--CC--CCCCcceeEEEEecchhhhcc
Q 020558 252 NVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF--PE--CDLPELRHLMFMLVHLIVAAS 322 (324)
Q Consensus 252 ~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~--~~~~~L~~L~l~~~~~i~~~~ 322 (324)
++++|+-+.+.... ...+..|..+..+++.|+.|.+..+.. +.+. .. ..|+.|+.|.++-|..|||.+
T Consensus 318 ~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~--~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGL--ITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred CCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccce--ehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 34445544444311 112233444455666666666655543 2221 11 788899999999888888763
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.97 E-value=1e-05 Score=84.24 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=44.4
Q ss_pred CCCCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEEe-cccCCccEEEEecCCCcceEE--Eec
Q 020558 158 PCGLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV-GSLLQLKCLHIDHCNNLEELE--ISC 233 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~-~~~~~L~~L~i~~c~~l~~l~--i~~ 233 (324)
+.++..+++|+.|+|.++. +.. +.. ++.+++||.|++.+|.....+.-. ..+++|+.|++.+|..++.+. ++.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence 3445567777777777643 211 111 455677777777777654332111 123566666666665554432 233
Q ss_pred CCccEEEEcce
Q 020558 234 PSLLSFKYFGP 244 (324)
Q Consensus 234 p~L~~L~~~~~ 244 (324)
++|+.|.+.|+
T Consensus 704 ~sL~~L~Lsgc 714 (1153)
T PLN03210 704 KSLYRLNLSGC 714 (1153)
T ss_pred CCCCEEeCCCC
Confidence 55555555544
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.3e-06 Score=74.40 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=96.6
Q ss_pred CCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcce---EEEecccCCccEEEEecCCC-c-----ceEEEe
Q 020558 163 RVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLR---LKVVGSLLQLKCLHIDHCNN-L-----EELEIS 232 (324)
Q Consensus 163 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---l~i~~~~~~L~~L~i~~c~~-l-----~~l~i~ 232 (324)
.=.+|+.|+|+.+. |+.++++-++++|..|.+|++.+|.-.+. +.+.+-.++|+.|++++|.. + .-+.-.
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 45789999999999 99999999999999999999999975443 23344448999999999884 2 224558
Q ss_pred cCCccEEEEcceee--E---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 233 CPSLLSFKYFGPEI--K---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 233 ~p~L~~L~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
||+|..|.++++.. + ..+-.++.|+.+++.-.|... ...+.+ +...|.|..|++..+.-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~-l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLE-LNSKPSLVYLDVFGCVS 375 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeee-eccCcceEEEEeccccC
Confidence 89999999998753 1 245578999999988644321 111211 46889999999987654
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.80 E-value=1e-06 Score=76.43 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=37.2
Q ss_pred CCCCCCCCCcEEEeeeEEeCHH---HHHHHHHcCCccceeEeecCC
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEE---ILEFFINNCPNLDDLRVGRSD 201 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~ 201 (324)
+.+.++|.|++|+|+...|+.+ .|..++++|..|++|.|.+|-
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 3456789999999999888754 588999999999999999994
No 10
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.7e-06 Score=74.45 Aligned_cols=150 Identities=19% Similarity=0.136 Sum_probs=96.4
Q ss_pred CCCCCCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeec----CCCcceEEEecccCCccEEEEecCCC----cceEEE
Q 020558 161 LSRVKSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGR----SDNLLRLKVVGSLLQLKCLHIDHCNN----LEELEI 231 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~----c~~~~~l~i~~~~~~L~~L~i~~c~~----l~~l~i 231 (324)
...||+++.|+|++.-++. +.+.+++...|+||.|+|.. |..... .....++||.|.+..|.- ++.+..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~--~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN--TTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc--chhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 3469999999999987765 56889999999999999996 332222 222458999999999983 445677
Q ss_pred ecCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC------
Q 020558 232 SCPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE------ 301 (324)
Q Consensus 232 ~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------ 301 (324)
..|+|+.|.+.+... .........|+++++....... ..-......+|.|+.|.+..+....+...+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 789999988766521 1334456677777777521110 1111123466777777776665532222222
Q ss_pred CCCCcceeEEEEe
Q 020558 302 CDLPELRHLMFML 314 (324)
Q Consensus 302 ~~~~~L~~L~l~~ 314 (324)
..|++|++|.++.
T Consensus 298 ~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 298 HTFPKLEYLNISE 310 (505)
T ss_pred cccccceeeeccc
Confidence 4667777776643
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.75 E-value=2.6e-05 Score=80.23 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=71.3
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceE---EEecCCccE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEEL---EISCPSLLS 238 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~ 238 (324)
.+++|++|+|++..+++.. . ....++|++|++.++.-...+ ..-..+++|++|+++++.....+ .-+.++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 4455555555544433210 0 123455555555554321110 00123356666666655421111 123456666
Q ss_pred EEEcceee----EEeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEE
Q 020558 239 FKYFGPEI----KLHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLM 311 (324)
Q Consensus 239 L~~~~~~~----~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ 311 (324)
|.+.+... +-.++++++|+.+++... .... +..-+..+++|+.|+++.+.. ....|. ..+++|++|.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNL--TGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCcee--ccccChhHhCCCCCCEEE
Confidence 66655432 223456666776666541 1111 112235778888888877653 223444 6778888888
Q ss_pred EEecc
Q 020558 312 FMLVH 316 (324)
Q Consensus 312 l~~~~ 316 (324)
++.+.
T Consensus 267 L~~n~ 271 (968)
T PLN00113 267 LYQNK 271 (968)
T ss_pred CcCCe
Confidence 86653
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.71 E-value=1.6e-06 Score=81.64 Aligned_cols=80 Identities=28% Similarity=0.470 Sum_probs=56.1
Q ss_pred CCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcce---EEEecccCCccEEEEecCCCcc-----eEEEe
Q 020558 162 SRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLR---LKVVGSLLQLKCLHIDHCNNLE-----ELEIS 232 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---l~i~~~~~~L~~L~i~~c~~l~-----~l~i~ 232 (324)
..|++|+.|.+.++. ++|.++..+...||+||+|.+.+|..++. ..+...|+.|++|++..|..+. .+...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 456888888888887 88888888888888888888888876543 2445567788888888877532 23334
Q ss_pred cCCccEEEE
Q 020558 233 CPSLLSFKY 241 (324)
Q Consensus 233 ~p~L~~L~~ 241 (324)
+|+|+.|.+
T Consensus 320 c~~l~~l~~ 328 (482)
T KOG1947|consen 320 CPNLRELKL 328 (482)
T ss_pred Ccchhhhhh
Confidence 566666553
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.54 E-value=6e-05 Score=78.59 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=87.2
Q ss_pred CCCCCcEEEeeeEEeC---HH--HHH-HHHHcCCccceeEeecCCCcceEEE-ecccCCccEEEEecCCCcceEE--Eec
Q 020558 163 RVKSLRFLYFDTVNVT---EE--ILE-FFINNCPNLDDLRVGRSDNLLRLKV-VGSLLQLKCLHIDHCNNLEELE--ISC 233 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~---~~--~l~-~ll~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~i~~c~~l~~l~--i~~ 233 (324)
.+++|++|.+.++... +. .+. .....+++|++|++.+|.....+-. -..+++|+.|.+.+|..++.+. +..
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L 824 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCc
Confidence 5778888888764311 10 011 1123467888888888765443211 1245778888888887776653 245
Q ss_pred CCccEEEEcceeeE-EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeE
Q 020558 234 PSLLSFKYFGPEIK-LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHL 310 (324)
Q Consensus 234 p~L~~L~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L 310 (324)
++|+.|.+.++..- .......+|+.+++........+ .-+..+++|+.|.++.+. ....+|. ..+++|+.|
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~L~L~~C~--~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP----WWIEKFSNLSFLDMNGCN--NLQRVSLNISKLKHLETV 898 (1153)
T ss_pred cccCEEECCCCCccccccccccccCEeECCCCCCccCh----HHHhcCCCCCEEECCCCC--CcCccCcccccccCCCee
Confidence 77888888776321 11112346677666542111111 113467788888887665 3444444 667777777
Q ss_pred EEEecchhhh
Q 020558 311 MFMLVHLIVA 320 (324)
Q Consensus 311 ~l~~~~~i~~ 320 (324)
.++.|..++.
T Consensus 899 ~l~~C~~L~~ 908 (1153)
T PLN03210 899 DFSDCGALTE 908 (1153)
T ss_pred ecCCCccccc
Confidence 7777766553
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.51 E-value=7.9e-05 Score=76.69 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=73.7
Q ss_pred CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC------------------------CcceEEEecccC
Q 020558 158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD------------------------NLLRLKVVGSLL 213 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~------------------------~~~~l~i~~~~~ 213 (324)
|..+..+++|+.|+|.++.+++. +..-+...+.|+.|++.++. -.+.+.-....+
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~ 475 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGE-LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK 475 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeE-CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccc
Confidence 34455677777777776665432 11123445555555555442 111110001123
Q ss_pred CccEEEEecCCCcceEE---EecCCccEEEEcceeeE----EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceE
Q 020558 214 QLKCLHIDHCNNLEELE---ISCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKT 285 (324)
Q Consensus 214 ~L~~L~i~~c~~l~~l~---i~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~ 285 (324)
+|+.|++++|.....+. -..++|+.|.+.+.... -.+.++++|+.+++.. ....... ..+..+++|+.
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~ 551 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQ 551 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCE
Confidence 45555555444211111 12355556655554321 2344566666666654 1111111 22346677888
Q ss_pred EEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558 286 LELHVELNEEILQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 286 L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 316 (324)
|+++.+.. ....|. ..+.+|++|+++.+.
T Consensus 552 L~Ls~N~l--~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 552 LDLSQNQL--SGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EECCCCcc--cccCChhHhcCcccCEEeccCCc
Confidence 88776653 233444 566778888876654
No 15
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.47 E-value=0.00015 Score=38.45 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=22.5
Q ss_pred CCcEEEeeeEEeCHH-HHHHHHHcCC
Q 020558 166 SLRFLYFDTVNVTEE-ILEFFINNCP 190 (324)
Q Consensus 166 ~L~~L~L~~~~~~~~-~l~~ll~~cp 190 (324)
+||+|+|..+.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998765 6999999998
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=9.4e-06 Score=76.47 Aligned_cols=128 Identities=21% Similarity=0.378 Sum_probs=79.9
Q ss_pred CCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecC-CCcc-----eEEEecccCCccEEEEecCCCcce-----EE
Q 020558 163 RVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRS-DNLL-----RLKVVGSLLQLKCLHIDHCNNLEE-----LE 230 (324)
Q Consensus 163 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c-~~~~-----~l~i~~~~~~L~~L~i~~c~~l~~-----l~ 230 (324)
.+++|+.|.+.++. +++..+..+...||+|++|.+.+| .... ...+...|++|++|++..|..+.. +.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 47999999999886 777778888999999999999883 3221 123456678888898888875333 22
Q ss_pred EecCCccEEEEcceee------EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEee
Q 020558 231 ISCPSLLSFKYFGPEI------KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVE 291 (324)
Q Consensus 231 i~~p~L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 291 (324)
-.+|+|+.|.+.++.. ......|++|+++++.+.... .+..+..+...|++++.|.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~-~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL-TDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc-hHHHHHHHHHhCcchhhhhhhhc
Confidence 2467777777554431 123445666777766642111 22223333455666666554433
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=8.6e-06 Score=72.82 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=109.0
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC---CCcceEEEecccCCccEEEEec----CCCcceEEEecC
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS---DNLLRLKVVGSLLQLKCLHIDH----CNNLEELEISCP 234 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c---~~~~~l~i~~~~~~L~~L~i~~----c~~l~~l~i~~p 234 (324)
..+..|+...|.++.+.+...+..+..||++++|+|..- .+....+|...+|+|+.|+++. |+.-...+...+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 357889999999999876665567889999999999973 2334456777889999999985 332233455668
Q ss_pred CccEEEEcceeeE-----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcce
Q 020558 235 SLLSFKYFGPEIK-----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELR 308 (324)
Q Consensus 235 ~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 308 (324)
.|+.|.++++... -.+..+|+|+.+++.+.........- -..+..|+.|+|+.+.......++. ..|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccchh
Confidence 9999999888643 25778999999999863211000001 2356789999999887633333445 8999999
Q ss_pred eEEEEecc
Q 020558 309 HLMFMLVH 316 (324)
Q Consensus 309 ~L~l~~~~ 316 (324)
.|.++.+.
T Consensus 275 ~Lnls~tg 282 (505)
T KOG3207|consen 275 QLNLSSTG 282 (505)
T ss_pred hhhccccC
Confidence 99998874
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.17 E-value=5.6e-05 Score=60.90 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--E--ecCCccE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--I--SCPSLLS 238 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i--~~p~L~~ 238 (324)
+.-.+++|+|.+..|+. ++.+-..+..|+.|++.++.-. .+..-..+++|+.|.+++-. +..+. + ..|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 34467788888777643 4443335677888888776311 11111234667777766433 33332 1 2466666
Q ss_pred EEEcceeeE-----EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEE
Q 020558 239 FKYFGPEIK-----LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELH 289 (324)
Q Consensus 239 L~~~~~~~~-----~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~ 289 (324)
|.+.+.... ..+..+|+|+.+++.+ +......|.. .++..+|+|+.|+-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~-~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRL-FVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHH-HHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHH-HHHHHcChhheeCCE
Confidence 666554321 1344556666666555 2222222221 234455666655443
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.15 E-value=8.6e-05 Score=59.83 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=44.7
Q ss_pred eCHHHHHHH--HHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEEcceeeE-E--e
Q 020558 177 VTEEILEFF--INNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYFGPEIK-L--H 249 (324)
Q Consensus 177 ~~~~~l~~l--l~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~~~~~~-~--~ 249 (324)
++.+.+++. .-++-.+++|+|.++.-..--.+...+.+|+.|+++++. +.+++ + ..++|++|.+.+.... + .
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccc
Confidence 444444443 236668899999997422211233345799999999876 44442 2 2489999998877553 2 1
Q ss_pred e-CCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558 250 V-KNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV 315 (324)
Q Consensus 250 ~-~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~ 315 (324)
+ ..+|+|+++++......... -..-++.+++|+.|+|..++..+...-.. ..+|+|+.|.-...
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 2 35899999999862221111 12346789999999999887632211111 67888998865443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.07 E-value=9.6e-05 Score=65.74 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=77.3
Q ss_pred CCCcEEEeeeEEeCHHHHHHH---HHcC-CccceeEeecCCCcc----e-EEEecccCCccEEEEecCCCcce-----EE
Q 020558 165 KSLRFLYFDTVNVTEEILEFF---INNC-PNLDDLRVGRSDNLL----R-LKVVGSLLQLKCLHIDHCNNLEE-----LE 230 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~l---l~~c-p~Le~L~l~~c~~~~----~-l~i~~~~~~L~~L~i~~c~~l~~-----l~ 230 (324)
++|++|++.++.+++..+..+ +..+ ++|++|++.+|.-.. . ...-..+.+|++|++.+|. +.. +.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence 458888888777775544332 3444 777888888775321 0 0111233567777777665 221 10
Q ss_pred ---EecCCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCcccceecccc----ccCCCceEEEEEeeecce
Q 020558 231 ---ISCPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIV----NYFPQLKTLELHVELNEE 295 (324)
Q Consensus 231 ---i~~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~ 295 (324)
...++|+.|.+.++... ..+..+++|+.+++...... +..+..+. ...+.|+.|.+..+.+..
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~--~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT--DAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc--hHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 12257777777665321 12445677777777652111 11111112 234677777777665411
Q ss_pred ec--ccCC--CCCCcceeEEEEec
Q 020558 296 IL--QFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 296 ~~--~~~~--~~~~~L~~L~l~~~ 315 (324)
.. .+.. +.+++|++|.++.+
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCC
Confidence 11 1111 55567777777554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.90 E-value=0.00031 Score=62.48 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=97.5
Q ss_pred CC-CCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCCCcce-E-EEe---cccCCccEEEEecCCC-------c
Q 020558 163 RV-KSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSDNLLR-L-KVV---GSLLQLKCLHIDHCNN-------L 226 (324)
Q Consensus 163 ~~-~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~---~~~~~L~~L~i~~c~~-------l 226 (324)
.+ ++|+.|+|.++.+++.. +...+..++.|+.|++.+|.-... + .+. ...+.|++|++++|.- +
T Consensus 134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 45 89999999999988543 445567888999999999853211 0 111 1236999999998862 1
Q ss_pred ceEEEecCCccEEEEcceeeE----Ee-----eCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeeccee
Q 020558 227 EELEISCPSLLSFKYFGPEIK----LH-----VKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEI 296 (324)
Q Consensus 227 ~~l~i~~p~L~~L~~~~~~~~----~~-----~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 296 (324)
....-..|+|+.|.+.+.... .. ..+.+.|+.+++.+. ........+.+.+..+++|+.|+++.+.. ..
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l-~~ 292 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF-GE 292 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC-cH
Confidence 122234589999999886432 01 113479999999863 22112223344556678999999998876 22
Q ss_pred c---ccCC--CCC-CcceeEEEEec
Q 020558 297 L---QFPE--CDL-PELRHLMFMLV 315 (324)
Q Consensus 297 ~---~~~~--~~~-~~L~~L~l~~~ 315 (324)
. .+.. ..+ ++|+.|.+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCC
Confidence 2 1221 666 78888887643
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.77 E-value=0.00018 Score=70.29 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF 242 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~ 242 (324)
-||+|++|.+.+..+..+++.++..+.|+|..|++.++. ++.+..-+..++|+.|.+.+-. +.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe----------------~e 208 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLE----------------FE 208 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCC----------------CC
Confidence 589999999999999888899999999999999999983 3333222223344444433221 11
Q ss_pred ceeeEEeeCCCCCceEEEEecc-cCCc--ccceeccccccCCCceEEEEEeeec
Q 020558 243 GPEIKLHVKNVPQLVDVLIGGG-HGIG--KGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 243 ~~~~~~~~~~~~~L~~l~l~~~-~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
....-..+-++.+|+.++|+.. +... .-..+.+-...+|+||.|+.+...+
T Consensus 209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 1100001335666666666651 1111 1111233445688888888886665
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.69 E-value=0.00019 Score=70.12 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=45.1
Q ss_pred CCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-----EEe-----------cccCCccEEEEecCCC----
Q 020558 166 SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-----KVV-----------GSLLQLKCLHIDHCNN---- 225 (324)
Q Consensus 166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-----~i~-----------~~~~~L~~L~i~~c~~---- 225 (324)
+++..+|.++......++.+...+ |++|.+.++...... .+. .+-..|++|+|.+-..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 555556665555554444433222 666666654322110 000 1224566666654221
Q ss_pred -cceEEEecCCccEEEEcceeeE-----EeeCCCCCceEEEEec
Q 020558 226 -LEELEISCPSLLSFKYFGPEIK-----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 226 -l~~l~i~~p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~ 263 (324)
..+++.-.|+|++|.++|.... ....++|+|..++|++
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC
Confidence 2234444466666666654321 1244556666665554
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.69 E-value=0.00016 Score=67.27 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=19.0
Q ss_pred CCCCCCCcEEEeeeEEe---CHHHHHHHHHcCCccceeEeec
Q 020558 161 LSRVKSLRFLYFDTVNV---TEEILEFFINNCPNLDDLRVGR 199 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~---~~~~l~~ll~~cp~Le~L~l~~ 199 (324)
|.++++|+.|.|.+..| .|+.| -+|..+|+|+|..
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~ 278 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAF----YGLEKMEHLNLET 278 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcce----eeecccceeeccc
Confidence 45666677776665543 23322 2355666666653
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.30 E-value=0.0017 Score=60.67 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=52.3
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC--CCcceEEEecccCCccEEEEecCCCcceEEEec----CCcc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS--DNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC----PSLL 237 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c--~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~----p~L~ 237 (324)
..+|+.|.|.+..|+.-.-++ ++..|.||.|+|..- +.+..-..+.+ ..+++|++.+-. +..++.++ -+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~-It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNR-ITTLETGHFDSLNSLL 200 (873)
T ss_pred ccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeecccc-ccccccccccccchhe
Confidence 456999999887755322222 445678888888863 22221112211 567788776533 22222111 2555
Q ss_pred EEEEcceee----EEeeCCCCCceEEEEec
Q 020558 238 SFKYFGPEI----KLHVKNVPQLVDVLIGG 263 (324)
Q Consensus 238 ~L~~~~~~~----~~~~~~~~~L~~l~l~~ 263 (324)
+|+++.... +..++++|+|+.+.+.-
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccc
Confidence 666655432 13455666666666654
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.90 E-value=0.00011 Score=69.04 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCccEEEEecCCCcceEEE---ecCCccEEEEcceee---EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEE
Q 020558 213 LQLKCLHIDHCNNLEELEI---SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTL 286 (324)
Q Consensus 213 ~~L~~L~i~~c~~l~~l~i---~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L 286 (324)
.+|+.|++++-. +.++.. ...+|++|+++.... |-.+..++.|++++... +...|..++++.-+|..|
T Consensus 245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~-----NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN-----NKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc-----CcccccCCccchhhhhhh
Confidence 455555555422 222222 124666666655432 22344566666665543 222333344444443333
Q ss_pred EEEeeecceecccCC--CCCCcceeEEEEecchh
Q 020558 287 ELHVELNEEILQFPE--CDLPELRHLMFMLVHLI 318 (324)
Q Consensus 287 ~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~i 318 (324)
+.-.........+|+ +.|+.|++|+|+-...|
T Consensus 319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred HHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence 332222213444555 55555555555444433
No 27
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.77 E-value=0.0063 Score=54.75 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=33.7
Q ss_pred cCCCCChHHHHHHHhcCC-hhHHHHhhhcccchhhcccc
Q 020558 16 WVSRLPDDILVNIISRLT-LKEAARTSVLSSRWKYLWTY 53 (324)
Q Consensus 16 ~~s~LPd~vl~~Ils~L~-~~d~~r~s~vsk~W~~lw~~ 53 (324)
.+++||+|+|..|..+|+ .-|++|.++||+.||..-..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 478999999999999997 68999999999999985443
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.69 E-value=0.0039 Score=54.31 Aligned_cols=36 Identities=31% Similarity=0.581 Sum_probs=34.4
Q ss_pred cccCCCCC----hHHHHHHHhcCChhHHHHhhhcccchhh
Q 020558 14 KDWVSRLP----DDILVNIISRLTLKEAARTSVLSSRWKY 49 (324)
Q Consensus 14 ~d~~s~LP----d~vl~~Ils~L~~~d~~r~s~vsk~W~~ 49 (324)
.|.+..|| |+|...|||||+..++..|..|||+|++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 58899999 9999999999999999999999999986
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.65 E-value=0.024 Score=51.73 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=43.2
Q ss_pred CCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcce
Q 020558 166 SLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGP 244 (324)
Q Consensus 166 ~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~ 244 (324)
+|++|.+.++. ++ .+...+ .++|++|.+.+|..+..+ .++|+.|.+. +.....+.---++|+.|.+.+.
T Consensus 73 sLtsL~Lsnc~nLt--sLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~-~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 73 ELTEITIENCNNLT--TLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIK-GSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCcEEEccCCCCcc--cCCchh--hhhhhheEccCccccccc-----ccccceEEeC-CCCCcccccCcchHhheecccc
Confidence 47777776653 21 111111 256777777777554421 1467777765 2223333332356777766432
Q ss_pred eeE--EeeC--CCCCceEEEEec
Q 020558 245 EIK--LHVK--NVPQLVDVLIGG 263 (324)
Q Consensus 245 ~~~--~~~~--~~~~L~~l~l~~ 263 (324)
... ..+. -.++|+.+.+..
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~ 165 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTG 165 (426)
T ss_pred ccccccccccccCCcccEEEecC
Confidence 211 0001 124677777764
No 30
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.35 E-value=0.0091 Score=51.61 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=31.0
Q ss_pred cccCCCCChHHHHHHHhc-----CChhHHHHhhhcccchhh
Q 020558 14 KDWVSRLPDDILVNIISR-----LTLKEAARTSVLSSRWKY 49 (324)
Q Consensus 14 ~d~~s~LPd~vl~~Ils~-----L~~~d~~r~s~vsk~W~~ 49 (324)
-+.|+.||||||..||.. ++++++.++|+|||.|..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 355789999999999965 567999999999999975
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.11 E-value=0.022 Score=56.53 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=9.1
Q ss_pred CCceEEEEEeeec
Q 020558 281 PQLKTLELHVELN 293 (324)
Q Consensus 281 ~~L~~L~l~~~~~ 293 (324)
++|+.|+|+.+.+
T Consensus 342 ~~Lq~LdLS~N~L 354 (788)
T PRK15387 342 SGLQELSVSDNQL 354 (788)
T ss_pred cccceEecCCCcc
Confidence 4778888876654
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.94 E-value=0.034 Score=55.24 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=5.6
Q ss_pred CCceEEEEEee
Q 020558 281 PQLKTLELHVE 291 (324)
Q Consensus 281 ~~L~~L~l~~~ 291 (324)
++|+.|+++.+
T Consensus 382 ~~L~~LdLs~N 392 (788)
T PRK15387 382 SGLKELIVSGN 392 (788)
T ss_pred cccceEEecCC
Confidence 34555555544
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.0012 Score=53.49 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=35.8
Q ss_pred CCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEEe--cccCCccEEEEecCC
Q 020558 163 RVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV--GSLLQLKCLHIDHCN 224 (324)
Q Consensus 163 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~i~~c~ 224 (324)
.++.++.|.|.+|. +.|..++.|-.-.|+||+|+|++|+.++.-.+. ..+++|+.|.|.+-+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 45666666666666 666666666556667777777776655542221 233555555555433
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.56 E-value=0.038 Score=35.95 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=17.7
Q ss_pred cccCCCceEEEEEeeecceecccCCCCCCcceeEEEEe
Q 020558 277 VNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFML 314 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 314 (324)
+..+++|+.|+++.+.+..+..-....+++|++|+++.
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 34556666666664443111110114555666665543
No 35
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.34 E-value=0.01 Score=31.41 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=18.1
Q ss_pred CCcceeEEEEecchhhhccC
Q 020558 304 LPELRHLMFMLVHLIVAASL 323 (324)
Q Consensus 304 ~~~L~~L~l~~~~~i~~~~~ 323 (324)
|++|++|.|..|..|+|.++
T Consensus 1 c~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHH
Confidence 68999999999999999875
No 36
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.20 E-value=0.03 Score=29.53 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=13.8
Q ss_pred CCCCcEEEeeeEE-eCHHHHHHHH
Q 020558 164 VKSLRFLYFDTVN-VTEEILEFFI 186 (324)
Q Consensus 164 ~~~L~~L~L~~~~-~~~~~l~~ll 186 (324)
||+|++|+|.+|. ++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4566666666665 6666665543
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.99 E-value=0.18 Score=46.25 Aligned_cols=134 Identities=25% Similarity=0.318 Sum_probs=68.6
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCC-ccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCP-NLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF 242 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~ 242 (324)
++++++|+++++.+.. +. ..| +|++|.+.+|..++.+.- .-.+.|++|.+++|..+..+ .++|+.|.+.
T Consensus 51 ~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL---PESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc---ccccceEEeC
Confidence 5677777777664321 11 122 477777777766543211 11246777777777655432 2466667665
Q ss_pred ceeeEEeeCCC-CCceEEEEecccCCcccceeccccccC-CCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558 243 GPEIKLHVKNV-PQLVDVLIGGGHGIGKGKVIGPIVNYF-PQLKTLELHVELNEEILQFPECDLPELRHLMFMLV 315 (324)
Q Consensus 243 ~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (324)
+.... .+..+ ++|+++.+...... .. ..+...+ ++|+.|.+..+.. ...|..--..|++|.++.+
T Consensus 121 ~n~~~-~L~~LPssLk~L~I~~~n~~-~~---~~lp~~LPsSLk~L~Is~c~~---i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATD-SIKNVPNGLTSLSINSYNPE-NQ---ARIDNLISPSLKTLSLTGCSN---IILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCc-ccccCcchHhheeccccccc-cc---cccccccCCcccEEEecCCCc---ccCcccccccCcEEEeccc
Confidence 43221 12232 34666655321100 00 0111112 6799999986543 2334322258999988664
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.94 E-value=0.024 Score=34.29 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD 201 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 201 (324)
++|++|+|.+..|++ +...++.||+|+.|++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578888888888764 55547788999999988873
No 39
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.62 E-value=0.0037 Score=59.12 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=28.9
Q ss_pred cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558 156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS 200 (324)
Q Consensus 156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 200 (324)
.+|+.+-.+..|+.|+|++..+.+- ..-+....++-.|+|++-
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccC
Confidence 4566677888999999988776431 111344567778888764
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.00 E-value=0.091 Score=34.10 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeee
Q 020558 234 PSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVEL 292 (324)
Q Consensus 234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 292 (324)
|+|+.|.+.+.... -.+.++++|+.+++...... ..-.+.+..+++|+.|.++.+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT---SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES---EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC---ccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555444221 24567788888887742111 1122345688888888887653
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.81 E-value=0.25 Score=40.44 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCCCCCcEEEeeeEEeCH--HHHHHHHHcCCccceeEeecCC--CcceEEEecccCCccEEEEecCCC-----cceEEE
Q 020558 161 LSRVKSLRFLYFDTVNVTE--EILEFFINNCPNLDDLRVGRSD--NLLRLKVVGSLLQLKCLHIDHCNN-----LEELEI 231 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~i~~c~~-----l~~l~i 231 (324)
+.++++|.+|.|.+.+|+. ..+... .|+|..|.+.+-+ .+.++.=...||+|++|.+-+-+. .....+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 4578889999998888663 445543 4888888888743 233333334678888888765441 222333
Q ss_pred -ecCCccEEEEcce
Q 020558 232 -SCPSLLSFKYFGP 244 (324)
Q Consensus 232 -~~p~L~~L~~~~~ 244 (324)
-.|+|+.|.+.+.
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 3488888887654
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.15 E-value=0.02 Score=46.66 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=45.4
Q ss_pred cEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcceE
Q 020558 168 RFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEEL 229 (324)
Q Consensus 168 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~l 229 (324)
+.+.-+++.|..++++. +.+++.++.|.+.+|..+.++ .+....++|+.|+|++|+.+..-
T Consensus 104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 44555555677777887 789999999999999877653 23345589999999999865443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=0.039 Score=47.75 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=40.2
Q ss_pred CCCCCcEEEeeeEEeCHH-HHHHHHHcCCccceeEeecCCCcceEE-EecccCCccEEEEecCC
Q 020558 163 RVKSLRFLYFDTVNVTEE-ILEFFINNCPNLDDLRVGRSDNLLRLK-VVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~i~~c~ 224 (324)
.+.+++.|+|.+..+++. .+.+|+...|.|+.|++..-.-...+. .+.+..+|+.|.+.+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 467888888888887764 588888888888888887543222211 11234567777766543
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.0027 Score=54.11 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=7.5
Q ss_pred cccCCCceEEEEEeee
Q 020558 277 VNYFPQLKTLELHVEL 292 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~ 292 (324)
++++|+|+.|.|..+.
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 3444555555544443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.70 E-value=0.023 Score=48.50 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCCCCCCCCcEEEeeeEEeCH---HHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcceEEEe
Q 020558 159 CGLSRVKSLRFLYFDTVNVTE---EILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEELEIS 232 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~l~i~ 232 (324)
+.+..||+|....|+...|+. +.+..+++....|+.|.+.+|. .+.. +|.. -|.+|-. .+-.-+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk---al~~la~------nKKaa~ 155 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK---ALFHLAY------NKKAAD 155 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH---HHHHHHH------Hhhhcc
Confidence 345679999999999887764 4588889999999999999983 2111 1111 1112111 111234
Q ss_pred cCCccEEEEcceeeE--------EeeCCCCCceEEEEeccc-CC--cccceeccccccCCCceEEEEEeeecceecc---
Q 020558 233 CPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGH-GI--GKGKVIGPIVNYFPQLKTLELHVELNEEILQ--- 298 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~-~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--- 298 (324)
.|.|+++.+...... ..+..--+|.++.+.... .. .....+-. +..+.+|+.|+|+++.. ....
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~g-l~y~~~LevLDlqDNtf-t~~gS~~ 233 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG-LFYSHSLEVLDLQDNTF-TLEGSRY 233 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHH-HHHhCcceeeeccccch-hhhhHHH
Confidence 566666655443221 012222456666655311 10 01111111 34667777777777765 2111
Q ss_pred cCC--CCCCcceeEEEEecc
Q 020558 299 FPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 299 ~~~--~~~~~L~~L~l~~~~ 316 (324)
+.. +.+++|+.|.+..|-
T Consensus 234 La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 234 LADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHhcccchhhhccccchh
Confidence 111 677777777777664
No 46
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=91.63 E-value=0.02 Score=56.53 Aligned_cols=121 Identities=18% Similarity=0.246 Sum_probs=55.4
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC--CcceEEEecccCCccEEEEecCCCcceE---EEecCCccE
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD--NLLRLKVVGSLLQLKCLHIDHCNNLEEL---EISCPSLLS 238 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~ 238 (324)
++.|..|.+.+..++|..+.- +-+.++|+.|+|++-. ......+ ..++.|++|++++-. +..+ ...++.|++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~-~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKL-RKLEELEELNLSGNK-LTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHH-hchHHhHHHhcccch-hhhhhHHHHhhhhhHH
Confidence 344555555555555443332 4445555555555431 1111001 112344444444322 2222 123355555
Q ss_pred EEEcceee---EEeeCCCCCceEEEEeccc--CCcccceeccccccCCCceEEEEEeeec
Q 020558 239 FKYFGPEI---KLHVKNVPQLVDVLIGGGH--GIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 239 L~~~~~~~---~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
|...+... | .+...++|+-++++... .....+.. --|+||.|+++++..
T Consensus 435 L~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-----p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-----PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC-----CCcccceeeccCCcc
Confidence 55544422 3 46667777777776411 11112211 117888998887764
No 47
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.97 E-value=0.18 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=16.0
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHH
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFI 186 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll 186 (324)
+++|++|+|+++.|+++++..|.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47888999998888888877653
No 48
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=89.60 E-value=0.035 Score=54.97 Aligned_cols=152 Identities=22% Similarity=0.232 Sum_probs=82.3
Q ss_pred CCCCCCCCCCcEEEeeeEEeCH---HH-------HHHHHHcCCccce--------------eEeecCC-CcceEEEeccc
Q 020558 158 PCGLSRVKSLRFLYFDTVNVTE---EI-------LEFFINNCPNLDD--------------LRVGRSD-NLLRLKVVGSL 212 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~~~~---~~-------l~~ll~~cp~Le~--------------L~l~~c~-~~~~l~i~~~~ 212 (324)
|+-..++++|++|.|....+.. .. ++.+-.+|-.|+. |.+.+-. ....+.+-...
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 5555678999999999887542 21 2222223333332 3222211 00111222334
Q ss_pred CCccEEEEecCCCcceEEE----ecCCccEEEEcceee---EEeeCCCCCceEEEEecccCCcccceeccccccCCCceE
Q 020558 213 LQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKT 285 (324)
Q Consensus 213 ~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~ 285 (324)
..||.|++++-. +..+.- ..+.|+.|.++|... +-.+.++++|+.+.-........+ =+..+++|+.
T Consensus 383 ~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-----e~~~l~qL~~ 456 (1081)
T KOG0618|consen 383 KHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-----ELAQLPQLKV 456 (1081)
T ss_pred cceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-----hhhhcCcceE
Confidence 677777776532 232221 224555666677643 234556777776655432111111 1458899999
Q ss_pred EEEEeeecceecccCC-CCCCcceeEEEEecc
Q 020558 286 LELHVELNEEILQFPE-CDLPELRHLMFMLVH 316 (324)
Q Consensus 286 L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 316 (324)
++++.+.. ..-..++ ..-++||+|+++-..
T Consensus 457 lDlS~N~L-~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSCNNL-SEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Eecccchh-hhhhhhhhCCCcccceeeccCCc
Confidence 99999987 4444455 333899999986554
No 49
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.51 E-value=0.18 Score=50.27 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=65.1
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEEEEcc
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSFKYFG 243 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L~~~~ 243 (324)
++|++|+|.+..++. +..-+ .+.|+.|.+.+|.-. .+... ....|+.|+++++ .+..+.-.. ++|+.|.+.+
T Consensus 220 ~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~-~LP~~-l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRIT-ELPER-LPSALQSLDLFHN-KISCLPENLPEELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCcccc--CChhh--hccccEEECcCCccC-cCChh-HhCCCCEEECcCC-ccCccccccCCCCcEEECCC
Confidence 466666666655431 11101 235666766665321 11000 1135777777643 244433222 4677777666
Q ss_pred eeeEEeeCC-CCCceEEEEecccCCcccceecccc-ccCCCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558 244 PEIKLHVKN-VPQLVDVLIGGGHGIGKGKVIGPIV-NYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLV 315 (324)
Q Consensus 244 ~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (324)
....-.-.. .++|+.+++.... +..++ ...++|+.|.++.+.. ..+|...+++|+.|.++.+
T Consensus 293 N~Lt~LP~~lp~sL~~L~Ls~N~-------Lt~LP~~l~~sL~~L~Ls~N~L---t~LP~~l~~sL~~L~Ls~N 356 (754)
T PRK15370 293 NSIRTLPAHLPSGITHLNVQSNS-------LTALPETLPPGLKTLEAGENAL---TSLPASLPPELQVLDVSKN 356 (754)
T ss_pred CccccCcccchhhHHHHHhcCCc-------cccCCccccccceeccccCCcc---ccCChhhcCcccEEECCCC
Confidence 532210001 1234444444311 11111 1236889998887754 3344433468999998776
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=0.023 Score=49.15 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=92.4
Q ss_pred CCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeecCC---CcceEEEecccCCccEEEEecCCC---cceEEEecCCcc
Q 020558 165 KSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGRSD---NLLRLKVVGSLLQLKCLHIDHCNN---LEELEISCPSLL 237 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~---~~~~l~i~~~~~~L~~L~i~~c~~---l~~l~i~~p~L~ 237 (324)
.-+.-|.+.++.|.. +++..+-+.|..+++|+|.+-. |...-.|-...|.|+.|++++-+- +..+.+...+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345677888888765 4577778899999999999742 222223444568999999975431 223334446999
Q ss_pred EEEEcceeeEE-----eeCCCCCceEEEEecc-c--CCcc-----------------------cceeccccccCCCceEE
Q 020558 238 SFKYFGPEIKL-----HVKNVPQLVDVLIGGG-H--GIGK-----------------------GKVIGPIVNYFPQLKTL 286 (324)
Q Consensus 238 ~L~~~~~~~~~-----~~~~~~~L~~l~l~~~-~--~~~~-----------------------~~~~~~l~~~~~~L~~L 286 (324)
++-+.|...++ .+.+.|.++++.++.. + .... .....++..-+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99999886542 4667788888765541 1 0000 11234455678888888
Q ss_pred EEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 287 ELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 287 ~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
.+..+.. +...... ..|+.+--|+|+..
T Consensus 205 ~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~ 234 (418)
T KOG2982|consen 205 FVCEGPL-KTESSEKGSEPFPSLSCLNLGAN 234 (418)
T ss_pred eeecCcc-cchhhcccCCCCCcchhhhhccc
Confidence 8887765 2222222 45565555655443
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.28 E-value=0.2 Score=47.94 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=35.5
Q ss_pred ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558 13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL 50 (324)
Q Consensus 13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l 50 (324)
..|.++.||-++..+||++|+.++++++++||+.|+.+
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 46899999999999999999999999999999999853
No 52
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.38 E-value=0.41 Score=47.84 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=37.7
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEEEEcc
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSFKYFG 243 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L~~~~ 243 (324)
++|+.|.|.++.+.. +..-+ ..+|+.|++.++ .++.+.- ...+.|+.|+++++. +..+.-.. ++|+.|.+.+
T Consensus 241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~-~l~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPE-NLPEELRYLSVYDNS-IRTLPAHLPSGITHLNVQS 313 (754)
T ss_pred ccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCcccc-ccCCCCcEEECCCCc-cccCcccchhhHHHHHhcC
Confidence 467888887776542 11111 246888888754 2322211 112467777777663 44432222 3455555554
Q ss_pred e
Q 020558 244 P 244 (324)
Q Consensus 244 ~ 244 (324)
.
T Consensus 314 N 314 (754)
T PRK15370 314 N 314 (754)
T ss_pred C
Confidence 4
No 53
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=86.83 E-value=0.011 Score=46.84 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEee
Q 020558 158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVG 198 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 198 (324)
|+.++.+.+|+.|+|.+..+.+ +--=+++.|.|+.|++.
T Consensus 49 ppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG 87 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence 4445556666666666655432 22225555666665554
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=85.42 E-value=0.38 Score=44.21 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=80.9
Q ss_pred CCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe--cCC-ccEEEEc
Q 020558 166 SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS--CPS-LLSFKYF 242 (324)
Q Consensus 166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~--~p~-L~~L~~~ 242 (324)
+|+.|++.+..+.. +..-+..+|+|+.|.+.++.-..........+.|+.|.+++.. +..+.-. .++ |+++.+.
T Consensus 141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 88888888777643 2122667899999999988543322221133788888887654 4554432 344 7777776
Q ss_pred cee-eE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 243 GPE-IK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 243 ~~~-~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
+.. .. ..+.+.+++..+.+..... ..+...+..+++++.|.++.+.+ ...+. ....+|++|.++..
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~s~n~i---~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQI---SSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred CCcceecchhhhhcccccccccCCcee----eeccchhccccccceeccccccc---cccccccccCccCEEeccCc
Confidence 662 22 2344455555544322000 00124456777788888877653 33333 66677777777553
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=84.86 E-value=1.3 Score=39.48 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=24.0
Q ss_pred CCCCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRS 200 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c 200 (324)
+.+||+|+.|+|....|+-++ +...++..|+|++|++.+|
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 345666666666666655432 4455666666666666666
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=84.64 E-value=1.3 Score=36.49 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=26.9
Q ss_pred CCccEEEEcceeeE-----EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEe
Q 020558 234 PSLLSFKYFGPEIK-----LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHV 290 (324)
Q Consensus 234 p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~ 290 (324)
|+|.+|.+.+.... -.++.||.|+.+.+-+ +......|.. .++-.+|+|+.|+++-
T Consensus 88 p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKLPSLRTLDFQK 149 (233)
T ss_pred cccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee-EEEEecCcceEeehhh
Confidence 45555555544321 1345566666666554 2222222222 2334666677666653
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=84.56 E-value=0.55 Score=28.26 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=9.9
Q ss_pred cccCCCceEEEEEeeec
Q 020558 277 VNYFPQLKTLELHVELN 293 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~ 293 (324)
+..+++|+.|.++.+..
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 34566666666665544
No 58
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=83.81 E-value=1 Score=45.91 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=19.2
Q ss_pred CCCCCcEEEeeeEEe-CHHHHHHHHHcCCccceeEeecCCCc
Q 020558 163 RVKSLRFLYFDTVNV-TEEILEFFINNCPNLDDLRVGRSDNL 203 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~c~~~ 203 (324)
.+|.|++|-+.+..- -...-...+...|.|..|++.+|...
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 455666666655431 00001111344566666666665443
No 59
>PF13013 F-box-like_2: F-box-like domain
Probab=83.77 E-value=0.74 Score=33.85 Aligned_cols=30 Identities=17% Similarity=-0.028 Sum_probs=26.8
Q ss_pred cCCCCChHHHHHHHhcCChhHHHHhhhccc
Q 020558 16 WVSRLPDDILVNIISRLTLKEAARTSVLSS 45 (324)
Q Consensus 16 ~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk 45 (324)
.+.+||+||+..|+.+-.-.++...+..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999988887776
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.83 E-value=1.1 Score=38.06 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=6.8
Q ss_pred eCCCCCceEEEEec
Q 020558 250 VKNVPQLVDVLIGG 263 (324)
Q Consensus 250 ~~~~~~L~~l~l~~ 263 (324)
...+|+|+.+++.+
T Consensus 87 ~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSG 100 (260)
T ss_pred hhhCCceeEEeecC
Confidence 33445555555544
No 61
>PLN03150 hypothetical protein; Provisional
Probab=76.23 E-value=1.6 Score=42.92 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=33.1
Q ss_pred CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558 158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~ 224 (324)
|..+..+++|+.|+|.+..+.+. +..-+..+++|+.|+|.++.-...+ ..-..+++|+.|+++++.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 33445566666666666555421 2222455666666666665322111 011233566666666543
No 62
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=75.33 E-value=2.5 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred cccCCCCChHHHHHHHhcCChhHHHH
Q 020558 14 KDWVSRLPDDILVNIISRLTLKEAAR 39 (324)
Q Consensus 14 ~d~~s~LPd~vl~~Ils~L~~~d~~r 39 (324)
...|+.||.||-..|+++|+..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 36899999999999999999998754
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.28 E-value=1.1 Score=38.11 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=42.3
Q ss_pred CCCCCcEEEeeeEEeC-HHHHHHHHHcCCccceeEeecCC--CcceEEEecccCCccEEEEecCCC
Q 020558 163 RVKSLRFLYFDTVNVT-EEILEFFINNCPNLDDLRVGRSD--NLLRLKVVGSLLQLKCLHIDHCNN 225 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~i~~c~~ 225 (324)
.+|+||.|.++...+. ..++.-++..||+|++|++++-. .+..+.=......|+.|.+.+|+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 5788999999876432 23477777788999999999753 233333223345677888888874
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.48 E-value=4.1 Score=30.43 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=14.3
Q ss_pred CCCCCCCcEEEeee-EE-eCHHHHHHHHHcCCccceeEeec
Q 020558 161 LSRVKSLRFLYFDT-VN-VTEEILEFFINNCPNLDDLRVGR 199 (324)
Q Consensus 161 ~~~~~~L~~L~L~~-~~-~~~~~l~~ll~~cp~Le~L~l~~ 199 (324)
+.++++|+.+.+.. +. +.+.. .++|+.|+++.+..
T Consensus 8 F~~~~~l~~i~~~~~~~~I~~~~----F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPNTIKKIGENA----FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETST--EE-TTT----TTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECCCeeEeChhh----cccccccccccccc
Confidence 44566677666652 22 22222 34566666666654
No 65
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=71.06 E-value=1.4 Score=37.60 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=41.1
Q ss_pred ccccCCCCChHHHHHHHhcCC-hhHHHHhhhcccch------hhccccCceeeEeccccc
Q 020558 13 LKDWVSRLPDDILVNIISRLT-LKEAARTSVLSSRW------KYLWTYASNLNFDASKLL 65 (324)
Q Consensus 13 ~~d~~s~LPd~vl~~Ils~L~-~~d~~r~s~vsk~W------~~lw~~~~~l~f~~~~~~ 65 (324)
+.-.+.+||.+++..|+.+++ -+|+..++.+-..- +.+|+.+-.++|.+..+.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445789999999999999998 68999888764433 467888766888765544
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=67.24 E-value=7.3 Score=34.23 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=28.1
Q ss_pred ccccCCCceEEEEEeeecceecccCCCCCCcceeEEEEecc
Q 020558 276 IVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVH 316 (324)
Q Consensus 276 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 316 (324)
=.+-+|.++.|.++.+.+.++.. -..+++|.+|.++...
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNL 340 (490)
T ss_pred hhhhccceeEEeccccceeeehh--hhhcccceEeecccch
Confidence 34578999999999887533332 1577899999987654
No 67
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.01 E-value=5.2 Score=21.26 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=18.9
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHH
Q 020558 165 KSLRFLYFDTVNVTEEILEFFIN 187 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~ 187 (324)
++|++|+|++..+++++...|..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57999999999999988776543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.00 E-value=0.18 Score=43.42 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=36.3
Q ss_pred eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
...||.|+.+.+...... -.+-+..|++|++|.|+-+.+..+..+.. ..+|+|+.|.|...
T Consensus 37 c~kMp~lEVLsLSvNkIs-----sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKIS-----SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcccceeEEeeccccc-----cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 456777777777642211 11225678888888887776533333333 66777777766543
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=64.42 E-value=4.5 Score=18.71 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=4.3
Q ss_pred ccceeEeecC
Q 020558 191 NLDDLRVGRS 200 (324)
Q Consensus 191 ~Le~L~l~~c 200 (324)
+|+.|++.+|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4444444444
No 70
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=63.99 E-value=6 Score=34.75 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=74.6
Q ss_pred CCCCcEEEeeeEE--eCHHHH-HH----HHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCC-----------
Q 020558 164 VKSLRFLYFDTVN--VTEEIL-EF----FINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNN----------- 225 (324)
Q Consensus 164 ~~~L~~L~L~~~~--~~~~~l-~~----ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~----------- 225 (324)
|..|+.|....+. |+...+ .+ =++.+.+|..+.+.-|+--....+...-|+|..+.+.+...
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence 5566666666654 332211 11 14455666677777665332222222226666666554220
Q ss_pred ------------cceE--EEec-CCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEE
Q 020558 226 ------------LEEL--EISC-PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLE 287 (324)
Q Consensus 226 ------------l~~l--~i~~-p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~ 287 (324)
-+.+ ++++ .-|+.+.+++.... -+..-.|.++.+.++.. +....+-++.+++|..|+
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-----~i~~v~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-----RIRTVQNLAELPQLQLLD 335 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEecccc-----ceeeehhhhhcccceEee
Confidence 0011 1122 34555555544322 12333556666555531 111112267889999999
Q ss_pred EEeeecceecccCCCCCCcceeEEEEecchhhh
Q 020558 288 LHVELNEEILQFPECDLPELRHLMFMLVHLIVA 320 (324)
Q Consensus 288 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~ 320 (324)
|+.+..-++.... ..+.|.|.|.+... .|.+
T Consensus 336 LS~N~Ls~~~Gwh-~KLGNIKtL~La~N-~iE~ 366 (490)
T KOG1259|consen 336 LSGNLLAECVGWH-LKLGNIKTLKLAQN-KIET 366 (490)
T ss_pred cccchhHhhhhhH-hhhcCEeeeehhhh-hHhh
Confidence 9988652111111 68889999998654 4443
No 71
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=57.40 E-value=5.8 Score=40.62 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=36.3
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHH---HHH-HH-cCCccceeEeecCCCcceEEEecccCCccEEEEecCCCc
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEIL---EFF-IN-NCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNL 226 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l---~~l-l~-~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l 226 (324)
.+..+++|+.|.+..+.+.+... ... .. .+|+|..+.+.+|.....+.-....++|++|.+..|+.+
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 34456677777776666543211 100 01 255666666666666555443344467777777766643
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=57.32 E-value=1.7 Score=42.64 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.5
Q ss_pred CCCCCcEEEeeeEEeCH
Q 020558 163 RVKSLRFLYFDTVNVTE 179 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~ 179 (324)
.|..|++|.|.+|.++.
T Consensus 107 pF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLST 123 (1096)
T ss_pred cccceeeEEecCcchhh
Confidence 48899999999998753
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=56.49 E-value=31 Score=25.44 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=33.5
Q ss_pred CCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeE
Q 020558 234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHL 310 (324)
Q Consensus 234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (324)
++|+.+.+.+.... ..+.+++.|+.+.+......... ..+..+++++.+.+..... .+.......+ +|+.+
T Consensus 35 ~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~~~~i~~----~~F~~~~~l~~i~~~~~~~-~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 35 TSLKSINFPNNLTSIGDNAFSNCKSLESITFPNNLKSIGD----NAFSNCTNLKNIDIPSNIT-EIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETSTT-EE-T----TTTTT-TTECEEEETTT-B-EEHTTTTTT--T--EE
T ss_pred cccccccccccccccceeeeeccccccccccccccccccc----ccccccccccccccCcccc-EEchhhhcCC-CceEE
Confidence 45666665543221 24667878888888531111111 2345788888888854321 3333222444 77777
Q ss_pred EEE
Q 020558 311 MFM 313 (324)
Q Consensus 311 ~l~ 313 (324)
.+.
T Consensus 109 ~~~ 111 (129)
T PF13306_consen 109 NIP 111 (129)
T ss_dssp E-T
T ss_pred EEC
Confidence 664
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=55.23 E-value=0.34 Score=47.21 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=22.3
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeec
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGR 199 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 199 (324)
-+|.|++|+|++..+++-+ -+..||.|+.|+|.+
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhccccccccccc
Confidence 3567777777777665533 255677777777775
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=53.81 E-value=9.8 Score=18.77 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.7
Q ss_pred cceeEeecC
Q 020558 192 LDDLRVGRS 200 (324)
Q Consensus 192 Le~L~l~~c 200 (324)
||+|++.+|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 76
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=51.18 E-value=7.2 Score=35.58 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=41.5
Q ss_pred CCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcc
Q 020558 234 PSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPEL 307 (324)
Q Consensus 234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L 307 (324)
|+|+.+++++.... -.+.++..+++++++..... ..-..+++++.+|+.|.|.++.+ ....|- .....|
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~---~v~~~~f~~ls~L~tL~L~~N~i--t~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE---FVSSGMFQGLSGLKTLSLYDNQI--TTVAPGAFQTLFSL 348 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH---HHHHHhhhccccceeeeecCCee--EEEeccccccccee
Confidence 56666666655321 24666777777777642211 11224467888999988887764 222222 344455
Q ss_pred eeEEE
Q 020558 308 RHLMF 312 (324)
Q Consensus 308 ~~L~l 312 (324)
..|.+
T Consensus 349 ~~l~l 353 (498)
T KOG4237|consen 349 STLNL 353 (498)
T ss_pred eeeeh
Confidence 55555
No 77
>PLN03150 hypothetical protein; Provisional
Probab=48.06 E-value=14 Score=36.39 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=52.7
Q ss_pred CccEEEEecCCCcceE---EEecCCccEEEEcceee----EEeeCCCCCceEEEEecc-cCCcccceeccccccCCCceE
Q 020558 214 QLKCLHIDHCNNLEEL---EISCPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKT 285 (324)
Q Consensus 214 ~L~~L~i~~c~~l~~l---~i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~ 285 (324)
.+..|.+.++.--..+ ....++|+.|.+.+... +-.++++++|+.+++... ..... -+.+..+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i----P~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI----PESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC----chHHhcCCCCCE
Confidence 3666666655411111 11347888888876643 224677888888888752 22111 123457888888
Q ss_pred EEEEeeecceecccCC---CCCCcceeEEEE
Q 020558 286 LELHVELNEEILQFPE---CDLPELRHLMFM 313 (324)
Q Consensus 286 L~l~~~~~~~~~~~~~---~~~~~L~~L~l~ 313 (324)
|.|+.+.+ ....|. ..+.++..+.+.
T Consensus 495 L~Ls~N~l--~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 495 LNLNGNSL--SGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred EECcCCcc--cccCChHHhhccccCceEEec
Confidence 88887764 223343 233455555554
No 78
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=46.52 E-value=4.7 Score=35.61 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558 17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL 50 (324)
Q Consensus 17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l 50 (324)
+..+|+++++.|++++.-+++.++|.++++-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4568999999999999999999999999999764
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=44.24 E-value=15 Score=31.90 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.0
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHH
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFIN 187 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~ 187 (324)
+..++.+.|++..|+.++.+.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~ 52 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCN 52 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHH
Confidence 567888899998888877665433
No 80
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=33.62 E-value=2.6 Score=33.84 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=53.6
Q ss_pred CCccEEEEecCCCcceE--EE-ecCCccEEEEcceee---EEeeCCCCCceEEEEecccC--CcccceeccccccCCCce
Q 020558 213 LQLKCLHIDHCNNLEEL--EI-SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHG--IGKGKVIGPIVNYFPQLK 284 (324)
Q Consensus 213 ~~L~~L~i~~c~~l~~l--~i-~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~l~~~~~~L~ 284 (324)
..|+.|++++-. ++++ .| +.|+|+.|++.-... +--++.+|-|+.+++.+..- ......| -.+.-|+
T Consensus 56 ~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnf----f~m~tlr 130 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF----FYMTTLR 130 (264)
T ss_pred hhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcch----hHHHHHH
Confidence 345555555422 3333 22 237777777653322 23477888888888876221 1111111 1445566
Q ss_pred EEEEEeeecceecccCC--CCCCcceeEEEEecchh
Q 020558 285 TLELHVELNEEILQFPE--CDLPELRHLMFMLVHLI 318 (324)
Q Consensus 285 ~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~i 318 (324)
-|.+.+++. ..+|. ..+.+|+.|.+.....+
T Consensus 131 alyl~dndf---e~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 131 ALYLGDNDF---EILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred HHHhcCCCc---ccCChhhhhhcceeEEeeccCchh
Confidence 777777654 33443 77888888887655433
No 81
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=31.29 E-value=86 Score=19.22 Aligned_cols=35 Identities=17% Similarity=0.458 Sum_probs=26.1
Q ss_pred CCCCcEEEeeeEEeCHH---HHHHHHHcCCccceeEee
Q 020558 164 VKSLRFLYFDTVNVTEE---ILEFFINNCPNLDDLRVG 198 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~ 198 (324)
..+|+.+.+.+..-... -+..++.+.+.||.+.+.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 36899999977663332 256789999999998874
No 82
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=29.60 E-value=83 Score=20.50 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred CCcEEEeeeEEeCHHHHHHHHH-----cCCccceeEe
Q 020558 166 SLRFLYFDTVNVTEEILEFFIN-----NCPNLDDLRV 197 (324)
Q Consensus 166 ~L~~L~L~~~~~~~~~l~~ll~-----~cp~Le~L~l 197 (324)
+=+.+.+....++.+++...+. +.|+||+|.+
T Consensus 33 nc~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 33 NCKKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 3456677777777776654432 6677777765
No 83
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=27.46 E-value=16 Score=33.54 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=36.9
Q ss_pred eCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEEEecchhh
Q 020558 250 VKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIV 319 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~ 319 (324)
+..+|+|++++++... ....+.+ +.++..|+.|.|..+.++.+..--.....+|+.|+|+.. +|+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it 335 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QIT 335 (498)
T ss_pred HhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeE
Confidence 5567788888877622 2222323 357777888888766542111100045667888888544 443
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=25.11 E-value=27 Score=32.41 Aligned_cols=78 Identities=22% Similarity=0.163 Sum_probs=34.8
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI----SCPSLL 237 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 237 (324)
..+++|++|.|++..|++ +.. ++.++.|+.|.+.+......-.. ..+..|+.+++.++. +..++. ..++++
T Consensus 115 ~~~~~L~~L~ls~N~I~~--i~~-l~~l~~L~~L~l~~N~i~~~~~~-~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITK--LEG-LSTLTLLKELNLSGNLISDISGL-ESLKSLKLLDLSYNR-IVDIENDELSELISLE 189 (414)
T ss_pred hhhhcchheecccccccc--ccc-hhhccchhhheeccCcchhccCC-ccchhhhcccCCcch-hhhhhhhhhhhccchH
Confidence 446666666666655543 111 22334466666665432111111 113555555555544 222222 224555
Q ss_pred EEEEcce
Q 020558 238 SFKYFGP 244 (324)
Q Consensus 238 ~L~~~~~ 244 (324)
.+.+.+.
T Consensus 190 ~l~l~~n 196 (414)
T KOG0531|consen 190 ELDLGGN 196 (414)
T ss_pred HHhccCC
Confidence 5555444
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=23.85 E-value=38 Score=17.16 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=6.8
Q ss_pred CCCcEEEeeeEE
Q 020558 165 KSLRFLYFDTVN 176 (324)
Q Consensus 165 ~~L~~L~L~~~~ 176 (324)
++|++|+|.+..
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 455666665554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=23.85 E-value=38 Score=17.16 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=6.8
Q ss_pred CCCcEEEeeeEE
Q 020558 165 KSLRFLYFDTVN 176 (324)
Q Consensus 165 ~~L~~L~L~~~~ 176 (324)
++|++|+|.+..
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 455666665554
No 87
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.39 E-value=22 Score=24.65 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=25.2
Q ss_pred CChHHHHHHHhcCChhHHHHhhhccc--chhhccccC
Q 020558 20 LPDDILVNIISRLTLKEAARTSVLSS--RWKYLWTYA 54 (324)
Q Consensus 20 LPd~vl~~Ils~L~~~d~~r~s~vsk--~W~~lw~~~ 54 (324)
+||++=.....++-.++.+++..+-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 56666666677777788888876643 789999843
No 88
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=22.20 E-value=21 Score=25.14 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=20.7
Q ss_pred CCChHHHHHHHhcCChhHHHHhhhc--ccchhhccccC
Q 020558 19 RLPDDILVNIISRLTLKEAARTSVL--SSRWKYLWTYA 54 (324)
Q Consensus 19 ~LPd~vl~~Ils~L~~~d~~r~s~v--sk~W~~lw~~~ 54 (324)
++|.+....|- .+|..++..+ .=+|+++|+-.
T Consensus 13 ~~~~~~~~~i~----a~Eka~a~eLq~~Gk~~~lWRv~ 46 (90)
T TIGR03221 13 DMPAEKAAAIK----AREKAYAQELQREGKWRHLWRVA 46 (90)
T ss_pred CCCHHHHHHHH----HHHHHHHHHHHhCCceEEEEEec
Confidence 45555555554 4577777655 45899999863
No 89
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=20.58 E-value=12 Score=34.29 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558 249 HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 249 ~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 316 (324)
.+++|..|.++.++..+........ .+.++++..|+++++ ++...|+ ..+.+|.+|.++...
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~---~~~L~~l~vLDLRdN---klke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEH---LKHLNSLLVLDLRDN---KLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHH---hcccccceeeecccc---ccccCchHHHHhhhhhhhcccCCc
No 90
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=20.08 E-value=1.4e+02 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=28.5
Q ss_pred ccCCCCChHHHHHHHhcCChhHHHHhhhcccch
Q 020558 15 DWVSRLPDDILVNIISRLTLKEAARTSVLSSRW 47 (324)
Q Consensus 15 d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W 47 (324)
+.+.++|.+++.-||.+++..++.+...-|..-
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL 34 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc
Confidence 457889999999999999999999988877544
Done!