Query 020558
Match_columns 324
No_of_seqs 132 out of 1577
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 8.5E-21 2.9E-25 169.2 2.9 261 13-321 5-286 (336)
2 2p1m_B Transport inhibitor res 99.8 5.1E-21 1.7E-25 183.3 -1.0 194 14-244 3-221 (594)
3 3ogk_B Coronatine-insensitive 99.7 7.3E-19 2.5E-23 168.3 6.9 97 18-133 14-122 (592)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.7E-10 5.7E-15 73.1 3.2 38 13-50 5-42 (53)
5 4fcg_A Uncharacterized protein 98.8 3.6E-09 1.2E-13 93.6 5.8 152 157-317 119-289 (328)
6 3ogk_B Coronatine-insensitive 98.7 3.1E-09 1E-13 101.4 3.1 37 162-198 290-326 (592)
7 2ast_B S-phase kinase-associat 98.7 8.4E-10 2.9E-14 97.7 -2.1 162 161-322 89-264 (336)
8 4fcg_A Uncharacterized protein 98.7 7.5E-09 2.6E-13 91.6 3.2 204 93-313 80-309 (328)
9 3e4g_A ATP synthase subunit S, 98.5 7.8E-09 2.7E-13 82.2 -1.8 60 165-225 61-126 (176)
10 2p1m_B Transport inhibitor res 98.5 1.2E-08 4E-13 97.3 -1.1 38 163-200 287-324 (594)
11 3e4g_A ATP synthase subunit S, 98.5 9.5E-08 3.2E-12 75.9 3.8 67 162-228 82-154 (176)
12 4fmz_A Internalin; leucine ric 98.3 2.5E-07 8.5E-12 82.1 3.1 144 161-315 106-275 (347)
13 4ezg_A Putative uncharacterize 98.3 2.2E-07 7.7E-12 75.6 2.0 140 163-315 42-191 (197)
14 2z66_A Variable lymphocyte rec 98.2 5.3E-07 1.8E-11 78.6 3.9 63 161-223 48-111 (306)
15 3o53_A Protein LRIM1, AGAP0063 98.2 1.5E-06 5.1E-11 76.2 6.6 142 161-315 54-201 (317)
16 3o53_A Protein LRIM1, AGAP0063 98.2 1.6E-06 5.4E-11 76.0 6.3 138 161-315 76-224 (317)
17 1h6u_A Internalin H; cell adhe 98.2 1.1E-06 3.8E-11 76.8 4.7 142 161-315 81-227 (308)
18 1ozn_A Reticulon 4 receptor; N 98.2 3.6E-07 1.2E-11 78.8 1.5 149 160-316 75-236 (285)
19 1h6t_A Internalin B; cell adhe 98.2 5.3E-07 1.8E-11 78.2 2.6 140 163-315 66-210 (291)
20 1m9s_A Internalin B; cell inva 98.2 3.9E-07 1.3E-11 87.1 1.8 142 161-315 61-207 (605)
21 1h6u_A Internalin H; cell adhe 98.2 3.6E-07 1.2E-11 79.9 1.0 143 161-316 59-206 (308)
22 2id5_A Lingo-1, leucine rich r 98.1 3.8E-06 1.3E-10 77.8 7.5 104 159-263 146-257 (477)
23 2ra8_A Uncharacterized protein 98.1 8E-08 2.7E-12 85.9 -3.8 158 161-322 135-323 (362)
24 3rfs_A Internalin B, repeat mo 98.1 8.9E-07 3E-11 75.9 2.6 146 161-316 59-216 (272)
25 2e31_A FBS1, F-box only protei 98.1 1.4E-06 4.6E-11 74.9 3.5 36 15-50 49-85 (297)
26 3oja_A Leucine-rich immune mol 98.1 1.1E-06 3.7E-11 82.0 3.0 95 161-263 54-153 (487)
27 3oja_A Leucine-rich immune mol 98.1 1.6E-06 5.4E-11 80.8 4.1 98 162-263 31-129 (487)
28 3l2o_B F-box only protein 4; s 98.1 5.4E-07 1.8E-11 76.6 0.7 34 16-49 4-37 (312)
29 3zyi_A Leucine-rich repeat-con 98.1 1E-06 3.4E-11 81.3 2.6 148 161-316 143-301 (452)
30 2id5_A Lingo-1, leucine rich r 98.1 3.7E-06 1.3E-10 77.9 6.3 36 278-315 197-234 (477)
31 3zyi_A Leucine-rich repeat-con 98.1 1.6E-06 5.6E-11 79.8 3.7 152 159-315 117-276 (452)
32 3rgz_A Protein brassinosteroid 98.1 1.6E-06 5.4E-11 85.4 3.5 105 158-263 93-209 (768)
33 3t6q_A CD180 antigen; protein- 98.1 2E-06 6.9E-11 82.1 4.0 106 156-263 292-409 (606)
34 4glp_A Monocyte differentiatio 98.0 3.9E-06 1.3E-10 73.3 5.2 109 96-224 66-180 (310)
35 3vq2_A TLR4, TOLL-like recepto 98.0 6E-06 2.1E-10 78.8 6.9 149 160-315 302-483 (606)
36 2o6q_A Variable lymphocyte rec 98.0 1.3E-06 4.3E-11 74.8 1.6 149 160-316 56-216 (270)
37 3zyj_A Leucine-rich repeat-con 98.0 2.4E-06 8.4E-11 78.4 3.5 149 160-316 131-290 (440)
38 1xku_A Decorin; proteoglycan, 98.0 6.2E-06 2.1E-10 72.6 5.8 97 165-263 121-225 (330)
39 3t6q_A CD180 antigen; protein- 98.0 1.4E-06 4.9E-11 83.1 1.7 153 160-315 320-510 (606)
40 4fmz_A Internalin; leucine ric 98.0 1.3E-06 4.4E-11 77.4 1.3 144 161-316 84-232 (347)
41 2z81_A CD282 antigen, TOLL-lik 98.0 4.8E-06 1.6E-10 78.5 5.3 146 162-316 358-508 (549)
42 2ell_A Acidic leucine-rich nuc 98.0 3.8E-07 1.3E-11 72.2 -2.4 134 163-316 22-158 (168)
43 3zyj_A Leucine-rich repeat-con 98.0 1.5E-06 5.2E-11 79.8 1.2 150 161-315 108-265 (440)
44 1ozn_A Reticulon 4 receptor; N 97.9 3.3E-06 1.1E-10 72.7 3.0 150 159-315 50-211 (285)
45 2z80_A TOLL-like receptor 2, v 97.9 1.8E-06 6.2E-11 76.8 0.9 153 159-315 94-259 (353)
46 1o6v_A Internalin A; bacterial 97.9 5.1E-06 1.7E-10 76.8 3.6 142 161-315 86-231 (466)
47 1wwl_A Monocyte differentiatio 97.9 6.5E-07 2.2E-11 78.4 -2.5 148 162-315 118-284 (312)
48 3o6n_A APL1; leucine-rich repe 97.9 2.7E-05 9.2E-10 70.1 8.1 144 162-315 138-305 (390)
49 2xwt_C Thyrotropin receptor; s 97.9 5.6E-06 1.9E-10 69.3 3.4 62 161-223 51-115 (239)
50 2z80_A TOLL-like receptor 2, v 97.9 1.8E-05 6.2E-10 70.2 6.9 154 161-315 120-287 (353)
51 2z81_A CD282 antigen, TOLL-lik 97.9 1.3E-05 4.3E-10 75.6 6.1 131 159-293 68-208 (549)
52 3rgz_A Protein brassinosteroid 97.9 4.6E-06 1.6E-10 82.1 3.1 101 161-263 219-327 (768)
53 2z66_A Variable lymphocyte rec 97.9 9.4E-06 3.2E-10 70.6 4.6 98 164-263 27-135 (306)
54 2o6q_A Variable lymphocyte rec 97.9 3.2E-06 1.1E-10 72.3 1.5 142 165-315 37-191 (270)
55 1p9a_G Platelet glycoprotein I 97.9 6.5E-06 2.2E-10 71.3 3.2 144 161-314 51-204 (290)
56 1wwl_A Monocyte differentiatio 97.8 4.4E-06 1.5E-10 73.0 2.0 143 165-319 149-309 (312)
57 3v7d_B Cell division control p 97.8 3.3E-06 1.1E-10 77.5 1.2 38 13-50 11-48 (464)
58 3rfs_A Internalin B, repeat mo 97.8 4.2E-06 1.4E-10 71.6 1.7 143 163-316 39-192 (272)
59 2z63_A TOLL-like receptor 4, v 97.8 2.4E-05 8.1E-10 74.0 7.0 38 277-315 441-480 (570)
60 3bz5_A Internalin-J, INLJ; leu 97.8 9.2E-06 3.1E-10 75.0 3.9 121 161-293 123-245 (457)
61 2xwt_C Thyrotropin receptor; s 97.8 2.5E-05 8.5E-10 65.3 6.3 144 165-315 31-189 (239)
62 2z63_A TOLL-like receptor 4, v 97.8 5.3E-06 1.8E-10 78.5 2.3 62 162-223 344-406 (570)
63 1xeu_A Internalin C; cellular 97.8 7.2E-06 2.5E-10 69.9 3.0 123 160-293 58-184 (263)
64 3bz5_A Internalin-J, INLJ; leu 97.8 1.2E-05 3.9E-10 74.3 4.5 140 161-315 102-243 (457)
65 1ogq_A PGIP-2, polygalacturona 97.8 7.6E-06 2.6E-10 71.6 2.7 147 159-315 119-278 (313)
66 2ca6_A RAN GTPase-activating p 97.8 5.9E-07 2E-11 81.0 -4.7 38 163-200 92-132 (386)
67 3m19_A Variable lymphocyte rec 97.8 5E-06 1.7E-10 70.2 1.3 143 165-315 35-189 (251)
68 3o6n_A APL1; leucine-rich repe 97.8 4E-05 1.4E-09 69.0 7.2 145 160-316 160-329 (390)
69 1p9a_G Platelet glycoprotein I 97.8 5.3E-06 1.8E-10 71.8 1.1 143 164-315 30-182 (290)
70 1o6v_A Internalin A; bacterial 97.8 7E-06 2.4E-10 75.9 1.9 60 161-224 217-276 (466)
71 2ca6_A RAN GTPase-activating p 97.8 1E-06 3.5E-11 79.4 -3.7 155 161-316 56-255 (386)
72 3vq2_A TLR4, TOLL-like recepto 97.7 1.3E-05 4.6E-10 76.4 3.7 98 161-263 281-385 (606)
73 3v47_A TOLL-like receptor 5B a 97.7 4E-05 1.4E-09 70.4 6.5 146 163-315 210-405 (455)
74 3v47_A TOLL-like receptor 5B a 97.7 9.6E-06 3.3E-10 74.5 2.3 37 277-315 343-381 (455)
75 1xku_A Decorin; proteoglycan, 97.7 1.3E-05 4.5E-10 70.4 2.7 144 160-315 71-226 (330)
76 1ogq_A PGIP-2, polygalacturona 97.7 7.2E-06 2.5E-10 71.7 0.8 151 158-316 94-255 (313)
77 3oja_B Anopheles plasmodium-re 97.7 9.3E-06 3.2E-10 77.6 1.7 61 250-316 250-312 (597)
78 2ovr_B FBW7, F-BOX/WD repeat p 97.7 2.5E-05 8.4E-10 71.3 4.0 37 13-49 15-51 (445)
79 1h6t_A Internalin B; cell adhe 97.7 7.5E-06 2.6E-10 70.9 0.4 140 163-315 44-188 (291)
80 1z7x_W Ribonuclease inhibitor; 97.6 1.6E-06 5.4E-11 79.9 -4.4 153 162-315 25-209 (461)
81 4ecn_A Leucine-rich repeat pro 97.6 7.6E-06 2.6E-10 81.3 0.0 68 157-224 440-526 (876)
82 3j0a_A TOLL-like receptor 5; m 97.6 0.00024 8.2E-09 70.6 10.8 40 159-200 142-184 (844)
83 4eco_A Uncharacterized protein 97.6 0.00012 4.2E-09 70.3 8.4 123 123-263 249-386 (636)
84 3oja_B Anopheles plasmodium-re 97.6 3.4E-05 1.2E-09 73.6 4.4 77 233-316 253-335 (597)
85 2je0_A Acidic leucine-rich nuc 97.6 6.2E-07 2.1E-11 69.4 -6.5 130 164-313 16-148 (149)
86 3g06_A SSPH2 (leucine-rich rep 97.6 5E-05 1.7E-09 72.7 5.4 114 189-316 180-295 (622)
87 2z62_A TOLL-like receptor 4, v 97.6 1.2E-05 4.2E-10 68.7 1.0 13 304-316 199-211 (276)
88 2z7x_B TOLL-like receptor 1, v 97.6 0.00016 5.3E-09 67.6 8.6 152 161-316 216-410 (520)
89 3g06_A SSPH2 (leucine-rich rep 97.6 5.6E-05 1.9E-09 72.4 5.4 115 163-293 79-193 (622)
90 1m9s_A Internalin B; cell inva 97.6 8.7E-06 3E-10 77.8 -0.2 140 163-315 41-185 (605)
91 1p22_A F-BOX/WD-repeat protein 97.6 1.1E-05 3.9E-10 73.5 0.5 41 13-53 7-57 (435)
92 4eco_A Uncharacterized protein 97.6 3.5E-05 1.2E-09 74.1 3.9 148 163-316 431-598 (636)
93 4glp_A Monocyte differentiatio 97.6 4.5E-06 1.5E-10 72.9 -2.3 149 165-315 64-261 (310)
94 1z7x_W Ribonuclease inhibitor; 97.5 3.9E-06 1.3E-10 77.3 -3.3 159 160-320 51-241 (461)
95 2z62_A TOLL-like receptor 4, v 97.5 1.9E-05 6.5E-10 67.5 1.2 31 281-314 200-233 (276)
96 1a9n_A U2A', U2A'; complex (nu 97.5 6.8E-06 2.3E-10 65.4 -1.6 79 162-244 16-98 (176)
97 1xeu_A Internalin C; cellular 97.4 3.6E-05 1.2E-09 65.5 1.9 140 163-315 39-182 (263)
98 2ft3_A Biglycan; proteoglycan, 97.4 2.6E-05 8.9E-10 68.6 0.9 34 278-314 238-273 (332)
99 1ziw_A TOLL-like receptor 3; i 97.4 3.5E-05 1.2E-09 74.6 1.7 43 159-201 399-441 (680)
100 2z7x_B TOLL-like receptor 1, v 97.4 0.00011 3.6E-09 68.8 4.2 43 159-201 342-385 (520)
101 3goz_A Leucine-rich repeat-con 97.4 7.8E-06 2.7E-10 73.0 -3.5 150 165-316 80-264 (362)
102 4ezg_A Putative uncharacterize 97.3 7.1E-05 2.4E-09 60.6 2.4 63 161-224 108-170 (197)
103 3j0a_A TOLL-like receptor 5; m 97.3 0.00014 4.9E-09 72.2 5.0 155 159-316 284-462 (844)
104 4ecn_A Leucine-rich repeat pro 97.3 9.4E-05 3.2E-09 73.5 3.6 146 165-316 673-838 (876)
105 1ziw_A TOLL-like receptor 3; i 97.3 6.8E-05 2.3E-09 72.5 2.5 36 277-315 476-514 (680)
106 1jl5_A Outer protein YOPM; leu 97.3 0.00029 9.8E-09 64.9 6.4 31 213-244 277-307 (454)
107 3un9_A NLR family member X1; l 97.3 1.6E-06 5.4E-11 77.9 -8.7 36 165-200 101-136 (372)
108 2ra8_A Uncharacterized protein 97.3 0.00014 4.8E-09 64.8 3.6 155 165-320 107-293 (362)
109 4g8a_A TOLL-like receptor 4; l 97.3 0.00012 4E-09 69.9 3.3 131 156-293 45-185 (635)
110 2ell_A Acidic leucine-rich nuc 97.3 8E-05 2.7E-09 58.5 1.6 107 188-316 22-131 (168)
111 2ft3_A Biglycan; proteoglycan, 97.2 4.4E-05 1.5E-09 67.2 0.0 32 281-315 193-227 (332)
112 3goz_A Leucine-rich repeat-con 97.2 1.7E-05 5.9E-10 70.7 -2.7 150 165-315 109-294 (362)
113 3m19_A Variable lymphocyte rec 97.2 4.9E-05 1.7E-09 64.1 0.2 129 160-293 54-191 (251)
114 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 0.00019 6.4E-09 67.9 3.8 100 160-263 71-178 (562)
115 3sb4_A Hypothetical leucine ri 97.2 0.00074 2.5E-08 59.2 7.3 32 96-132 27-58 (329)
116 2o6s_A Variable lymphocyte rec 97.2 9E-05 3.1E-09 60.4 1.2 123 164-292 27-159 (208)
117 1a9n_A U2A', U2A'; complex (nu 97.2 0.00021 7.1E-09 56.6 3.2 123 188-316 17-151 (176)
118 2v70_A SLIT-2, SLIT homolog 2 97.1 0.00012 4.2E-09 60.4 0.9 124 164-293 31-165 (220)
119 1jl5_A Outer protein YOPM; leu 97.1 0.00045 1.5E-08 63.6 4.8 135 165-315 131-267 (454)
120 3a79_B TLR6, VLRB.59, TOLL-lik 97.0 0.0022 7.6E-08 60.4 9.5 40 162-201 246-287 (562)
121 3cvr_A Invasion plasmid antige 97.0 0.001 3.5E-08 62.9 7.1 139 163-316 98-241 (571)
122 2xot_A Amphoterin-induced prot 96.9 0.00013 4.5E-09 64.9 0.2 145 164-314 38-198 (361)
123 3un9_A NLR family member X1; l 96.9 2.2E-05 7.5E-10 70.4 -5.1 62 163-224 124-194 (372)
124 2je0_A Acidic leucine-rich nuc 96.9 5.2E-05 1.8E-09 58.3 -2.5 106 188-315 15-123 (149)
125 3e6j_A Variable lymphocyte rec 96.9 0.00025 8.4E-09 58.9 1.0 123 164-292 39-170 (229)
126 2v9t_B SLIT homolog 2 protein 96.8 0.00022 7.4E-09 58.8 0.3 122 165-293 32-164 (220)
127 3cvr_A Invasion plasmid antige 96.8 0.00062 2.1E-08 64.4 3.3 113 166-293 121-242 (571)
128 4ay9_X Follicle-stimulating ho 96.8 0.003 1E-07 55.8 7.5 33 277-312 198-230 (350)
129 2v9t_B SLIT homolog 2 protein 96.7 0.0015 5.2E-08 53.7 4.9 118 190-316 32-163 (220)
130 1ds9_A Outer arm dynein; leuci 96.7 6E-06 2.1E-10 67.1 -9.6 62 160-224 43-104 (198)
131 3e6j_A Variable lymphocyte rec 96.6 0.0012 4.2E-08 54.6 3.4 120 189-316 39-170 (229)
132 4g8a_A TOLL-like receptor 4; l 96.3 0.001 3.5E-08 63.3 1.6 148 161-314 416-576 (635)
133 4ay9_X Follicle-stimulating ho 96.2 0.0038 1.3E-07 55.1 4.8 78 165-244 30-114 (350)
134 2o6s_A Variable lymphocyte rec 96.2 0.001 3.6E-08 54.0 0.7 121 161-293 48-177 (208)
135 4fdw_A Leucine rich hypothetic 96.2 0.0077 2.6E-07 54.3 6.4 36 277-314 319-354 (401)
136 1dce_A Protein (RAB geranylger 96.0 0.0007 2.4E-08 64.1 -1.5 145 161-312 405-567 (567)
137 1io0_A Tropomodulin; LRR prote 95.8 0.00036 1.2E-08 55.9 -3.7 118 162-293 33-163 (185)
138 2xot_A Amphoterin-induced prot 95.7 0.009 3.1E-07 52.9 4.8 119 189-315 38-173 (361)
139 2v70_A SLIT-2, SLIT homolog 2 95.7 0.0036 1.2E-07 51.4 1.9 101 161-263 53-162 (220)
140 1ds9_A Outer arm dynein; leuci 95.5 9.8E-05 3.3E-09 59.8 -8.4 108 161-287 66-180 (198)
141 1w8a_A SLIT protein; signaling 95.4 0.0033 1.1E-07 50.4 0.6 61 164-224 28-89 (192)
142 2wfh_A SLIT homolog 2 protein 95.3 0.005 1.7E-07 49.4 1.5 59 164-224 30-89 (193)
143 2wfh_A SLIT homolog 2 protein 95.1 0.017 5.9E-07 46.2 3.9 35 190-224 31-65 (193)
144 1dce_A Protein (RAB geranylger 95.0 0.012 4E-07 55.7 3.2 124 184-316 403-544 (567)
145 4b8c_D Glucose-repressible alc 94.9 0.0061 2.1E-07 59.5 0.9 105 186-315 220-326 (727)
146 3sb4_A Hypothetical leucine ri 94.9 0.033 1.1E-06 48.4 5.5 124 165-312 202-328 (329)
147 1io0_A Tropomodulin; LRR prote 94.8 0.00082 2.8E-08 53.8 -4.6 123 179-316 25-162 (185)
148 2o6r_A Variable lymphocyte rec 94.7 0.022 7.6E-07 44.6 3.6 34 190-224 28-63 (177)
149 2o6r_A Variable lymphocyte rec 94.7 0.0054 1.9E-07 48.2 -0.1 108 164-293 27-136 (177)
150 1w8a_A SLIT protein; signaling 94.5 0.026 8.8E-07 45.1 3.5 35 190-224 29-65 (192)
151 4fdw_A Leucine rich hypothetic 94.1 0.063 2.1E-06 48.3 5.6 76 234-314 300-379 (401)
152 4fs7_A Uncharacterized protein 94.1 0.026 9E-07 50.5 3.1 36 278-314 340-375 (394)
153 4b8c_D Glucose-repressible alc 93.7 0.0057 2E-07 59.6 -2.1 101 159-263 218-325 (727)
154 3g39_A Variable lymphocyte rec 92.3 0.11 3.7E-06 40.4 3.8 60 250-315 50-112 (170)
155 2r9u_A Variable lymphocyte rec 92.2 0.11 3.9E-06 40.5 3.8 34 278-314 78-114 (174)
156 2r9u_A Variable lymphocyte rec 88.0 0.078 2.7E-06 41.5 -0.6 59 164-224 32-92 (174)
157 4gt6_A Cell surface protein; l 86.6 0.5 1.7E-05 42.0 3.9 73 234-313 311-386 (394)
158 4fs7_A Uncharacterized protein 86.6 1.3 4.3E-05 39.4 6.5 72 233-310 319-393 (394)
159 3g39_A Variable lymphocyte rec 83.5 0.22 7.4E-06 38.7 -0.1 77 165-244 30-112 (170)
160 4gt6_A Cell surface protein; l 82.5 1.2 4.2E-05 39.4 4.6 78 233-315 287-367 (394)
161 4h09_A Hypothetical leucine ri 81.9 1.2 4.1E-05 39.1 4.2 58 250-312 282-340 (379)
162 3rw6_A Nuclear RNA export fact 81.8 0.27 9.1E-06 41.5 -0.1 36 164-199 169-205 (267)
163 2ifg_A High affinity nerve gro 76.4 1.9 6.6E-05 37.2 3.7 15 278-292 77-91 (347)
164 4h09_A Hypothetical leucine ri 76.1 0.79 2.7E-05 40.4 1.1 54 233-290 285-342 (379)
165 2ifg_A High affinity nerve gro 69.3 4 0.00014 35.1 4.1 61 250-315 27-90 (347)
166 3rw6_A Nuclear RNA export fact 50.2 5 0.00017 33.6 1.1 75 232-311 168-257 (267)
167 1pgv_A TMD-1, tropomodulin TMD 34.2 22 0.00075 28.1 2.4 116 163-292 39-168 (197)
168 1pgv_A TMD-1, tropomodulin TMD 32.3 23 0.0008 28.0 2.3 60 164-223 69-136 (197)
169 3rfe_A Platelet glycoprotein I 31.7 19 0.00066 26.1 1.6 36 255-293 32-67 (130)
170 2lz0_A Uncharacterized protein 29.1 36 0.0012 23.4 2.6 38 250-291 16-53 (100)
171 2kwv_A RAD30 homolog B, DNA po 22.5 50 0.0017 19.1 1.8 17 15-31 19-35 (48)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=8.5e-21 Score=169.16 Aligned_cols=261 Identities=18% Similarity=0.207 Sum_probs=160.4
Q ss_pred ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhcccc---CceeeEeccccccccchhhHHHHHHHHHHHHHHHHh
Q 020558 13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTY---ASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLE 89 (324)
Q Consensus 13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw~~---~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 89 (324)
....|++|||||+.+||+||+.+|+++++.|||+|+++... ...+++....+.+ ..+...+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~---------------~~~~~~~~ 69 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP---------------DVTGRLLS 69 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH---------------HHHHHHHH
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH---------------HHHHhhhh
Confidence 34578999999999999999999999999999999987321 2226665544331 11222211
Q ss_pred hcCCCCccEEEEEEe-CCCCCcchHHHHHHHHHhcCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCCCCCCCCc
Q 020558 90 SHKSLSVNEFIIVFD-LDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLR 168 (324)
Q Consensus 90 ~~~~~~l~~l~l~~~-~~~~~~~~v~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~L~ 168 (324)
..++.+.+... ....... .....++++|++..+. +. ...++..+..+++|+
T Consensus 70 ----~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~------------l~-----~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 70 ----QGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSV------------IE-----VSTLHGILSQCSKLQ 121 (336)
T ss_dssp ----TTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCE------------EC-----HHHHHHHHTTBCCCS
T ss_pred ----ccceEEEcCCccccccchh-------hccCCCCCEEEccCCC------------cC-----HHHHHHHHhhCCCCC
Confidence 11555544221 0110000 0112467777774321 00 000122245688999
Q ss_pred EEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcce-----EEEecC-CccEE
Q 020558 169 FLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEE-----LEISCP-SLLSF 239 (324)
Q Consensus 169 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~-----l~i~~p-~L~~L 239 (324)
+|+|.++.+++..... ++.|++|++|++.+|..++.. .+...+++|++|++++|..+.. +.-..| +|+.|
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 9999998888766655 566999999999998655431 1223568999999998854443 123457 99999
Q ss_pred EEcceee-------EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEE
Q 020558 240 KYFGPEI-------KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLM 311 (324)
Q Consensus 240 ~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 311 (324)
.+.++.. +..+.++++|+.+++..... ..+..+ ..+..+++|+.|.++.+.......... ..+++|++|.
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-CCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 9988631 12456789999999876221 111112 234577999999998775211122222 6789999999
Q ss_pred EEecchhhhc
Q 020558 312 FMLVHLIVAA 321 (324)
Q Consensus 312 l~~~~~i~~~ 321 (324)
++.+ +++.
T Consensus 279 l~~~--i~~~ 286 (336)
T 2ast_B 279 VFGI--VPDG 286 (336)
T ss_dssp CTTS--SCTT
T ss_pred ccCc--cCHH
Confidence 9876 5554
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=5.1e-21 Score=183.33 Aligned_cols=194 Identities=17% Similarity=0.247 Sum_probs=119.7
Q ss_pred cccCCCCChHHHHHHHhcCC-hhHHHHhhhcccchhhcccc-CceeeEeccccccccchhhHHHHHHHHHHHHHHHHhhc
Q 020558 14 KDWVSRLPDDILVNIISRLT-LKEAARTSVLSSRWKYLWTY-ASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESH 91 (324)
Q Consensus 14 ~d~~s~LPd~vl~~Ils~L~-~~d~~r~s~vsk~W~~lw~~-~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 91 (324)
.|.|+.||||||.+||+||+ .+|++++++|||+|+++... ...+.+....... ....+...
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-----------------~~~~~~~~ 65 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-----------------PATVIRRF 65 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-----------------HHHHHHHC
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-----------------HHHHHhhC
Confidence 58999999999999999999 99999999999999987211 1224443221110 01222232
Q ss_pred CCCCccEEEEEEeCCC--------CCcchHHHHHHHHHh--cCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCC
Q 020558 92 KSLSVNEFIIVFDLDD--------SHESNISHWVYTAIS--KRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGL 161 (324)
Q Consensus 92 ~~~~l~~l~l~~~~~~--------~~~~~v~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 161 (324)
+.++++.+...... .....+..|+..... +++++|++..+... ......+ .
T Consensus 66 --~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~~~~~l-------------~ 126 (594)
T 2p1m_B 66 --PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT----DDCLELI-------------A 126 (594)
T ss_dssp --TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC----HHHHHHH-------------H
T ss_pred --CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc----HHHHHHH-------------H
Confidence 33888888764211 011345678876653 48999999754211 0000001 1
Q ss_pred CCCCCCcEEEeeeE-EeCHHHHHHHHHcCCccceeEeecCCCcce-----E-EEecccCCccEEEEecCC-C-----cce
Q 020558 162 SRVKSLRFLYFDTV-NVTEEILEFFINNCPNLDDLRVGRSDNLLR-----L-KVVGSLLQLKCLHIDHCN-N-----LEE 228 (324)
Q Consensus 162 ~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-----l-~i~~~~~~L~~L~i~~c~-~-----l~~ 228 (324)
..|++|++|+|.++ .+++..+..++.+||+|++|++.+|. ++. + .+...+++|++|++++|. . +..
T Consensus 127 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 14799999999999 58888899999999999999999985 211 1 122355788888888775 1 112
Q ss_pred EEEecCCccEEEEcce
Q 020558 229 LEISCPSLLSFKYFGP 244 (324)
Q Consensus 229 l~i~~p~L~~L~~~~~ 244 (324)
+...+|+|++|.+.++
T Consensus 206 l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHCTTCCEEECCTT
T ss_pred HHHhCCCCcEEecCCC
Confidence 2224577777777654
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=7.3e-19 Score=168.33 Aligned_cols=97 Identities=8% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHhcC-ChhHHHHhhhcccchhhccccCce-eeEeccccccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 020558 18 SRLPDDILVNIISRL-TLKEAARTSVLSSRWKYLWTYASN-LNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLS 95 (324)
Q Consensus 18 s~LPd~vl~~Ils~L-~~~d~~r~s~vsk~W~~lw~~~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 95 (324)
+.||||||.+||+|| +.+|++++++|||+|++++...+. +.+. ..+. .....++...+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~----------------~~~~~~~~~~~~-- 74 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYT----------------ATPDRLSRRFPN-- 74 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGG----------------SCHHHHHHHCTT--
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccc----------------cChHHHHHhCCC--
Confidence 489999999999999 799999999999999998543221 2221 1111 112233333333
Q ss_pred ccEEEEEEeCC--------CCCcchHHHHHHHHH--hcCceEEEEEcC
Q 020558 96 VNEFIIVFDLD--------DSHESNISHWVYTAI--SKRAQKFELNLF 133 (324)
Q Consensus 96 l~~l~l~~~~~--------~~~~~~v~~wl~~~~--~~~l~~L~l~~~ 133 (324)
++++.+..+.. .........|+.... .+++++|++..+
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 122 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence 88888865321 011223455666554 247888888654
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.01 E-value=1.7e-10 Score=73.13 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=32.9
Q ss_pred ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558 13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL 50 (324)
Q Consensus 13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l 50 (324)
..+.++.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~ 42 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999975
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.81 E-value=3.6e-09 Score=93.62 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEe----------cccCCccEEEEecCCCc
Q 020558 157 SPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV----------GSLLQLKCLHIDHCNNL 226 (324)
Q Consensus 157 l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~----------~~~~~L~~L~i~~c~~l 226 (324)
+|..+..+++|++|+|.+..++ .+..-+..+++|++|++.+|...+.+... ..+++|++|+++++. +
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l 195 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-I 195 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-C
T ss_pred hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-c
Confidence 3455678899999999988876 33333678999999999998654432111 135899999998875 3
Q ss_pred ceEE---EecCCccEEEEcceeeE---EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEeeecceeccc
Q 020558 227 EELE---ISCPSLLSFKYFGPEIK---LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF 299 (324)
Q Consensus 227 ~~l~---i~~p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 299 (324)
..+. -..++|+.|.+.+.... -.+.++++|+.+++.. ...... ...+..+++|+.|.++.+.. ....
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~--~~~~ 269 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY----PPIFGGRAPLKRLILKDCSN--LLTL 269 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC----CCCTTCCCCCCEEECTTCTT--CCBC
T ss_pred CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh----HHHhcCCCCCCEEECCCCCc--hhhc
Confidence 3331 13478999998876432 2466788999998886 222222 22356789999999988763 4455
Q ss_pred CC--CCCCcceeEEEEecch
Q 020558 300 PE--CDLPELRHLMFMLVHL 317 (324)
Q Consensus 300 ~~--~~~~~L~~L~l~~~~~ 317 (324)
|. ..+++|++|+|+.+..
T Consensus 270 p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTT
T ss_pred chhhhcCCCCCEEeCCCCCc
Confidence 55 7889999999987653
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.74 E-value=3.1e-09 Score=101.41 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEee
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVG 198 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 198 (324)
..+++|++|+|.++.+++..+..++..||+|++|.+.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 3456666666666666655555555566666666554
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.70 E-value=8.4e-10 Score=97.73 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=116.3
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcce-EEEecccCCccEEEEecCCCcce-----EEEecC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLR-LKVVGSLLQLKCLHIDHCNNLEE-----LEISCP 234 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~i~~c~~l~~-----l~i~~p 234 (324)
+..+++|++|+|.++.+++..+..++..||+|++|++.+|.-... ...-..+++|++|++++|..+.. +.-.+|
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 346899999999999999888888899999999999999852211 11123468999999999964442 223569
Q ss_pred CccEEEEcce-eeE-----EeeCCCC-CceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCc
Q 020558 235 SLLSFKYFGP-EIK-----LHVKNVP-QLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPE 306 (324)
Q Consensus 235 ~L~~L~~~~~-~~~-----~~~~~~~-~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 306 (324)
+|+.|.+.++ ... ..+.+++ +|+.+++........+..+..++..+++|+.|+++.+........+. ..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 9999999887 332 2366789 99999998632122223344456789999999999876212222233 67899
Q ss_pred ceeEEEEecchhhhcc
Q 020558 307 LRHLMFMLVHLIVAAS 322 (324)
Q Consensus 307 L~~L~l~~~~~i~~~~ 322 (324)
|++|.++.+..+++.+
T Consensus 249 L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 249 LQHLSLSRCYDIIPET 264 (336)
T ss_dssp CCEEECTTCTTCCGGG
T ss_pred CCEeeCCCCCCCCHHH
Confidence 9999999988776653
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.67 E-value=7.5e-09 Score=91.56 Aligned_cols=204 Identities=15% Similarity=0.118 Sum_probs=124.2
Q ss_pred CCCccEEEEEEeCCCCCcchHHHHHHHHHhcCceEEEEEcCCCCCCCCCCcceeeCCCCcc--------cccCCCCCCCC
Q 020558 93 SLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYD--------YLKSPCGLSRV 164 (324)
Q Consensus 93 ~~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~--------~l~l~~~~~~~ 164 (324)
...+..+.+....-. .+...+. .-.++++|++....-...+ .....+..+. .-.+|..+..+
T Consensus 80 ~~~l~~L~L~~n~l~----~lp~~l~--~l~~L~~L~L~~n~l~~lp----~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP----QFPDQAF--RLSHLQHMTIDAAGLMELP----DTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS----SCCSCGG--GGTTCSEEEEESSCCCCCC----SCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccceeEEEccCCCch----hcChhhh--hCCCCCEEECCCCCccchh----HHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 344888887553211 1111111 1357999999765433111 0001111121 11457778889
Q ss_pred CCCcEEEeeeEEeCHHHHHH--------HHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--E-ec
Q 020558 165 KSLRFLYFDTVNVTEEILEF--------FINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--I-SC 233 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~--------ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i-~~ 233 (324)
++|++|+|.++.+....-.. .+.++++|++|++.++.-......-..+++|++|+++++. +..+. + ..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccC
Confidence 99999999997633210001 1235899999999998432111112345899999999886 33331 2 34
Q ss_pred CCccEEEEcceee----EEeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558 234 PSLLSFKYFGPEI----KLHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE 306 (324)
Q Consensus 234 p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~ 306 (324)
++|+.|.+.+... +..+.++++|+.+++.. ....... .-+..+++|+.|+|+.+. .....|. ..+++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~--~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCV--NLSRLPSLIAQLPA 302 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCT--TCCCCCGGGGGSCT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCC--chhhccHHHhhccC
Confidence 8999999988532 33577899999999986 2222222 224688999999999877 4556666 77888
Q ss_pred ceeEEEE
Q 020558 307 LRHLMFM 313 (324)
Q Consensus 307 L~~L~l~ 313 (324)
|+.+.+.
T Consensus 303 L~~l~l~ 309 (328)
T 4fcg_A 303 NCIILVP 309 (328)
T ss_dssp TCEEECC
T ss_pred ceEEeCC
Confidence 8888775
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=7.8e-09 Score=82.16 Aligned_cols=60 Identities=7% Similarity=0.070 Sum_probs=37.9
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE---ec---ccCCccEEEEecCCC
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV---VG---SLLQLKCLHIDHCNN 225 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i---~~---~~~~L~~L~i~~c~~ 225 (324)
..|++|+++++.+++.++..+ ++|++|++|+|.+|..+++-.+ .. .+++|++|++++|+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 357777777777777777664 5777777777777766654222 11 134577777777764
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.48 E-value=1.2e-08 Score=97.32 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS 200 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 200 (324)
.+++|++|+|.++.+++..+..++..||+|++|.+.+|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 35677777777766666666666667777777777665
No 11
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=9.5e-08 Score=75.91 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=55.9
Q ss_pred CCCCCCcEEEeeeEE-eCHHHHHHHHH---cCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcce
Q 020558 162 SRVKSLRFLYFDTVN-VTEEILEFFIN---NCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEE 228 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~-~~~~~l~~ll~---~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~ 228 (324)
.+|++|++|+|.+|. ++|.++..|.. .|+.||+|+|.+|..+++-.+ -..+++|++|++++|+.+..
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 479999999999997 99999999876 388999999999998875322 23579999999999986553
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.30 E-value=2.5e-07 Score=82.08 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=70.7
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCC---------------
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNN--------------- 225 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~--------------- 225 (324)
+..+++|++|++.++.+.+- .. +..+++|++|++.+|.....+..-..+++|++|.+.+|..
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 182 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred HcCCCcCCEEECcCCcccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence 34556666666665554321 11 4455666666665554333222122334444444444331
Q ss_pred ------cceEE--EecCCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecce
Q 020558 226 ------LEELE--ISCPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEE 295 (324)
Q Consensus 226 ------l~~l~--i~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 295 (324)
+..+. -..++|+.+.+.+.... ..+..+++|+.+++......... . +..+++|+.|+++.+..
T Consensus 183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~l-- 255 (347)
T 4fmz_A 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS----P-LANLSQLTWLEIGTNQI-- 255 (347)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC--
T ss_pred EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc----c-hhcCCCCCEEECCCCcc--
Confidence 11111 11244555544443221 01445666666666542111111 1 56778888888877654
Q ss_pred ecccCC-CCCCcceeEEEEec
Q 020558 296 ILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 296 ~~~~~~-~~~~~L~~L~l~~~ 315 (324)
...+. ..+++|++|+++.+
T Consensus 256 -~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 256 -SDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp -CCCGGGTTCTTCCEEECCSS
T ss_pred -CCChhHhcCCCcCEEEccCC
Confidence 22233 67788888888766
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.27 E-value=2.2e-07 Score=75.64 Aligned_cols=140 Identities=18% Similarity=0.278 Sum_probs=94.9
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcce--E-EE-ecCCccE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEE--L-EI-SCPSLLS 238 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~--l-~i-~~p~L~~ 238 (324)
.+++|++|++.+..+++ +. -+..+++|++|++.+| ..+.+..-..+++|++|.++++. +.. . .+ ..|+|+.
T Consensus 42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCE
Confidence 46788888888877653 22 1667888888888888 33333223356788888888765 221 1 11 3488888
Q ss_pred EEEcceeeE----EeeCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEE
Q 020558 239 FKYFGPEIK----LHVKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMF 312 (324)
Q Consensus 239 L~~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l 312 (324)
|.+.+.... -.+.++++|+.+++.... .... ..+..+++|+.|.++.+.. ...+. ..+++|++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-----~~l~~l~~L~~L~l~~n~i---~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-----MPLKTLPELKSLNIQFDGV---HDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-----GGGGGCSSCCEEECTTBCC---CCCTTGGGCSSCCEEEE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-----HhhcCCCCCCEEECCCCCC---cChHHhccCCCCCEEEe
Confidence 888776432 246789999999998632 2211 1367889999999988764 33334 78899999999
Q ss_pred Eec
Q 020558 313 MLV 315 (324)
Q Consensus 313 ~~~ 315 (324)
+..
T Consensus 189 ~~N 191 (197)
T 4ezg_A 189 FSQ 191 (197)
T ss_dssp CBC
T ss_pred eCc
Confidence 654
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.24 E-value=5.3e-07 Score=78.56 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=35.7
Q ss_pred CCCCCCCcEEEeeeEEeCHHH-HHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEI-LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHC 223 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c 223 (324)
+..+++|++|+|.+..++..+ ...-..++++|++|++.++.-......-..+++|++|+++++
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 457888888888877655211 011134578888888887742221111223466666666543
No 15
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.23 E-value=1.5e-06 Score=76.23 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSF 239 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L 239 (324)
+..+++|++|+|.+..+++.. . +..+++|++|++.++. ++.+. ..++|++|.++++. +..+.... ++|+.|
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L 125 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI 125 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEE
T ss_pred hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEE
Confidence 345566666666555432110 0 4455666666666552 11111 22566666666554 34443322 666666
Q ss_pred EEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEe
Q 020558 240 KYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFML 314 (324)
Q Consensus 240 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~ 314 (324)
.+.+.... ..+.++++|+.+++.... ........+...+++|+.|.++.+.+... +. ..+++|++|.++.
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSS 200 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCS
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCC
Confidence 66655321 234556777777766421 11122233445678888888887764222 33 4578899988876
Q ss_pred c
Q 020558 315 V 315 (324)
Q Consensus 315 ~ 315 (324)
+
T Consensus 201 N 201 (317)
T 3o53_A 201 N 201 (317)
T ss_dssp S
T ss_pred C
Confidence 5
No 16
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.21 E-value=1.6e-06 Score=76.05 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=96.0
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceE---EE-ecCCc
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEEL---EI-SCPSL 236 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l---~i-~~p~L 236 (324)
+..+++|++|+|++..+++ +..++.|++|.+.++.-. .+.. ..+++|++|.++++. +..+ .+ ..++|
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l~-~~~~-~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L 146 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS-RVSC-SRGQGKKNIYLANNK-ITMLRDLDEGCRSRV 146 (317)
T ss_dssp ETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCS-EEEE-CCCSSCEEEECCSSC-CCSGGGBCTGGGSSE
T ss_pred hhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCccC-CcCc-cccCCCCEEECCCCC-CCCccchhhhccCCC
Confidence 5679999999999988764 335699999999998533 3222 345899999999876 3322 22 34899
Q ss_pred cEEEEcceeeE-E----eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCccee
Q 020558 237 LSFKYFGPEIK-L----HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRH 309 (324)
Q Consensus 237 ~~L~~~~~~~~-~----~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~ 309 (324)
+.|.+.+.... + ...++++|+.+++......... -...+++|+.|+++.+.+ ...+. ..+++|++
T Consensus 147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~l~~L~~L~Ls~N~l---~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-----GQVVFAKLKTLDLSSNKL---AFMGPEFQSAAGVTW 218 (317)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-----CCCCCTTCCEEECCSSCC---CEECGGGGGGTTCSE
T ss_pred CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-----cccccccCCEEECCCCcC---CcchhhhcccCcccE
Confidence 99999877432 1 1246799999999862211111 122589999999998865 23333 67789999
Q ss_pred EEEEec
Q 020558 310 LMFMLV 315 (324)
Q Consensus 310 L~l~~~ 315 (324)
|.++.+
T Consensus 219 L~L~~N 224 (317)
T 3o53_A 219 ISLRNN 224 (317)
T ss_dssp EECTTS
T ss_pred EECcCC
Confidence 999765
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.18 E-value=1.1e-06 Score=76.79 Aligned_cols=142 Identities=11% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLS 238 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~ 238 (324)
+..+++|++|+|.+..+++- . -+..+++|++|++.+|.-.. +.--..+++|++|.++++. +..+. + ..++|+.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 155 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQY 155 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCE
T ss_pred HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCcCccccCCCCccE
Confidence 34677777777777765541 1 15567777777777764211 1112345677777777664 22221 1 2367777
Q ss_pred EEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 239 FKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 239 L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
|.+.+.... + .+.++++|+.+++.......... +..+++|+.|.++.+.. ...+. ..+++|++|.++.+
T Consensus 156 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l---~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQI---SDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCC---CBCGGGTTCTTCCEEEEEEE
T ss_pred EEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEEccCCcc---CccccccCCCCCCEEEccCC
Confidence 777665331 1 25667777777776522111111 45677777777776654 22223 56777777777654
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.18 E-value=3.6e-07 Score=78.84 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE---E-ec
Q 020558 160 GLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE---I-SC 233 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~---i-~~ 233 (324)
.+..+++|++|+|.+.. ++.-. ...+..+++|++|++.++.-.... ..-..+++|++|+++++. +..+. + ..
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 152 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDL 152 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccC
Confidence 34555666666665553 32110 111344566666666655321110 001234566666666554 23222 1 23
Q ss_pred CCccEEEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCc
Q 020558 234 PSLLSFKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPE 306 (324)
Q Consensus 234 p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~ 306 (324)
++|+.|.+.+.... + .+.++++|+.+++...... ......+..+++|+.|+++.+.+ ...+. ..+++
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA---HVHPHAFRDLGRLMTLYLFANNL---SALPTEALAPLRA 226 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCC---SCCCHHHHTTCTT
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCccc---ccCHhHccCcccccEeeCCCCcC---CcCCHHHcccCcc
Confidence 56666666655321 1 2455666776666542111 11112345667777777776643 22332 56777
Q ss_pred ceeEEEEecc
Q 020558 307 LRHLMFMLVH 316 (324)
Q Consensus 307 L~~L~l~~~~ 316 (324)
|++|.++..+
T Consensus 227 L~~L~l~~N~ 236 (285)
T 1ozn_A 227 LQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSC
T ss_pred cCEEeccCCC
Confidence 8877776543
No 19
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.18 E-value=5.3e-07 Score=78.19 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=62.6
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK 240 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~ 240 (324)
.+++|++|+|.+..+++- .. +..+++|++|.+.++.-. .+.--..+++|++|+++++. +..+. + ..++|+.|.
T Consensus 66 ~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLY 140 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEE
T ss_pred cCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCC-CChhhccCCCCCEEECCCCc-CCCChhhcCCCCCCEEE
Confidence 455666666655554431 11 445566666666555311 11111233555555555543 22221 0 225555555
Q ss_pred EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
+.+.... -.+.++++|+.+++......... . +..+++|+.|.++.+.+ ...+. ..+++|+.|.++.+
T Consensus 141 l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~i---~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC---CBCGGGTTCTTCSEEEEEEE
T ss_pred ccCCcCCcchhhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCcC---CCChhhccCCCCCEEECcCC
Confidence 5544221 12445555666555541111000 0 34556666666655543 22223 45556666655543
No 20
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.18 E-value=3.9e-07 Score=87.12 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=78.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS 238 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~ 238 (324)
+..+++|+.|+|.++.+.+- .. +..+++|+.|.|.+|.- ..+..-..+++|++|+++++. +..+. ...|+|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence 34567777777777665431 11 56677777777777632 111112344677777776665 33221 12367777
Q ss_pred EEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 239 FKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 239 L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
|.+.+.... -.+..+++|+.+++......... . +..+++|+.|.|+.+.+ ...+. ..+++|++|.|+.+
T Consensus 136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~i---~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC---CBCGGGTTCTTCSEEECCSE
T ss_pred EECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCCC---CCChHHccCCCCCEEEccCC
Confidence 776655332 13556677777777642111110 1 45667777777776643 22233 56667777776554
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.16 E-value=3.6e-07 Score=79.88 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=101.8
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLS 238 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~ 238 (324)
+..+++|++|+|.++.+++- .. +..+++|++|++.++. ++.+..-..+++|++|+++++. +..+. + ..++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 45789999999999887642 22 7889999999999985 2222223456899999999886 44332 2 3489999
Q ss_pred EEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 239 FKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 239 L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
|.+.+.... + .+.++++|+.+++......... . +..+++|+.|.++.+.+ ...+. ..+++|++|.++.+
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKADDNKI---SDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC---CCCGGGGGCTTCCEEECTTS
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECCCCcc---CcChhhcCCCCCCEEEccCC
Confidence 999877432 1 2678899999999863211111 1 57899999999998764 33333 77889999999766
Q ss_pred c
Q 020558 316 H 316 (324)
Q Consensus 316 ~ 316 (324)
.
T Consensus 206 ~ 206 (308)
T 1h6u_A 206 Q 206 (308)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.14 E-value=3.8e-06 Score=77.85 Aligned_cols=104 Identities=20% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE---ecC
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI---SCP 234 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i---~~p 234 (324)
..+..+++|++|+|.++.++.-. ...+..+++|+.|++.++.-.... ..-..+++|++|++++|..+..+.. ..+
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 35667888888888887765321 233667888888888886432110 0112346778888777664444321 113
Q ss_pred CccEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558 235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~ 263 (324)
+|++|.+.+.... ..+.++++|+.+++..
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 5666666554321 1244555666655554
No 23
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=8e-08 Score=85.94 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=99.1
Q ss_pred CCCCCCCcEEEeeeEEeC--------HHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCc----ce
Q 020558 161 LSRVKSLRFLYFDTVNVT--------EEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNL----EE 228 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l----~~ 228 (324)
...|++|+.|.+..+... ..++..++..+|+||+|.|.++.+.....+. .++|++|.+..|.-- ..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCCCChHHHHH
Confidence 346899999998765321 1247788999999999999988544322222 489999999876521 11
Q ss_pred EEE-ecCCccEEEEcce------e--e----E-EeeCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeec
Q 020558 229 LEI-SCPSLLSFKYFGP------E--I----K-LHVKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 229 l~i-~~p~L~~L~~~~~------~--~----~-~~~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
+.. ..|+|++|.++.. . . + +....+|+|+.+.+.... .+.....+.+. ..+++|+.|.|+.+.+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVL 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCC
Confidence 221 4699999997421 0 1 1 122358999999997522 11111111111 2578999999987765
Q ss_pred cee--cccCC--CCCCcceeEEEEecchhhhcc
Q 020558 294 EEI--LQFPE--CDLPELRHLMFMLVHLIVAAS 322 (324)
Q Consensus 294 ~~~--~~~~~--~~~~~L~~L~l~~~~~i~~~~ 322 (324)
... ..++. ..+++|++|.|+.+ .|++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~ 323 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM 323 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCC-cCCHHH
Confidence 211 11222 56789999999876 466543
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.12 E-value=8.9e-07 Score=75.90 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=95.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecCC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCPS 235 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~ 235 (324)
+..+++|++|+|.+..+++ +. -+..+++|++|++.+|.-.... ..-..+++|++|+++++. +..+.- ..++
T Consensus 59 l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTN 134 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred cccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCC
Confidence 4568899999998887664 22 2567889999999887422111 111345789999998876 444331 3478
Q ss_pred ccEEEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcce
Q 020558 236 LLSFKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELR 308 (324)
Q Consensus 236 L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~ 308 (324)
|+.|.+.+.... + .+.++++|+.+++...... ......+..+++|+.|.++.+.+ ...+. ..+++|+
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ---SLPEGVFDKLTQLKDLRLYQNQL---KSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCC
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcC---ccCHHHhcCCccCCEEECCCCcC---CccCHHHHhCCcCCC
Confidence 888888776432 1 2567888999888762211 11123356788999999988764 22222 6778888
Q ss_pred eEEEEecc
Q 020558 309 HLMFMLVH 316 (324)
Q Consensus 309 ~L~l~~~~ 316 (324)
+|.++.++
T Consensus 209 ~L~l~~N~ 216 (272)
T 3rfs_A 209 YIWLHDNP 216 (272)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 88886653
No 25
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.11 E-value=1.4e-06 Score=74.85 Aligned_cols=36 Identities=25% Similarity=0.641 Sum_probs=33.9
Q ss_pred ccCCCCChHHHHHHHhcCChhHHH-Hhhhcccchhhc
Q 020558 15 DWVSRLPDDILVNIISRLTLKEAA-RTSVLSSRWKYL 50 (324)
Q Consensus 15 d~~s~LPd~vl~~Ils~L~~~d~~-r~s~vsk~W~~l 50 (324)
..+..||+|++.+||++||.++++ ++++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 467899999999999999999999 999999999975
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.10 E-value=1.1e-06 Score=81.97 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=48.1
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe-cCCccEE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSF 239 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L 239 (324)
+..+++|++|+|+++.+++.. . +..+++|++|++.++. ++.+. ..++|++|+++++. +..+... .|+|+.|
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L 125 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI 125 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEE
T ss_pred HhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEE
Confidence 345667777776665543210 0 4556677777776662 22211 22566666666654 3333322 2566666
Q ss_pred EEcceee----EEeeCCCCCceEEEEec
Q 020558 240 KYFGPEI----KLHVKNVPQLVDVLIGG 263 (324)
Q Consensus 240 ~~~~~~~----~~~~~~~~~L~~l~l~~ 263 (324)
.+.+... +..++++++|+.+++..
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 6555432 12344555666555553
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.10 E-value=1.6e-06 Score=80.81 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEE
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKY 241 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~ 241 (324)
..+++|++|+|.+..+++-. ...+..+++|++|+|.+|.-..... -..+++|++|+++++. +..+.. .|+|+.|.+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence 35679999999998876421 1225789999999999986433333 3466899999999885 666554 399999999
Q ss_pred cceee-EEeeCCCCCceEEEEec
Q 020558 242 FGPEI-KLHVKNVPQLVDVLIGG 263 (324)
Q Consensus 242 ~~~~~-~~~~~~~~~L~~l~l~~ 263 (324)
.+... .+....+++|+.+++..
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~ 129 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLAN 129 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCS
T ss_pred cCCcCCCCCccccCCCCEEECCC
Confidence 88754 24455689999999986
No 28
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=5.4e-07 Score=76.60 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=32.2
Q ss_pred cCCCCChHHHHHHHhcCChhHHHHhhhcccchhh
Q 020558 16 WVSRLPDDILVNIISRLTLKEAARTSVLSSRWKY 49 (324)
Q Consensus 16 ~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~ 49 (324)
.|+.||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999996
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.09 E-value=1e-06 Score=81.28 Aligned_cols=148 Identities=17% Similarity=0.230 Sum_probs=89.6
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEE-E-ecCCc
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELE-I-SCPSL 236 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L 236 (324)
+..+++|++|+|.+..++.- -...+..+++|++|++.+|..++.+.. -..+++|++|+++++. +..+. + ..++|
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTC
T ss_pred hcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccc
Confidence 55677777777777665421 011245677777777777766555422 1245677777777665 33321 1 23678
Q ss_pred cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCccee
Q 020558 237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRH 309 (324)
Q Consensus 237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~ 309 (324)
+.|.+.+.... -.+.++++|+.+++...... ......+..+++|+.|+|+.+.+ ...+. ..+++|++
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS---LIERNAFDGLASLVELNLAHNNL---SSLPHDLFTPLRYLVE 294 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCC---SCCCTTSSTTCTTCCE
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCc---eECHHHhcCCCCCCEEECCCCcC---CccChHHhccccCCCE
Confidence 88887766432 24667788888887652211 11112356788999999987754 23333 56788999
Q ss_pred EEEEecc
Q 020558 310 LMFMLVH 316 (324)
Q Consensus 310 L~l~~~~ 316 (324)
|+|+..+
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9886654
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.08 E-value=3.7e-06 Score=77.94 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=17.7
Q ss_pred ccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 278 NYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
..+++|+.|+++.+.. ....+. ....+|++|.++.+
T Consensus 197 ~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 197 KRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CSCTTCCEEEEECCTT--CCEECTTTTTTCCCSEEEEESS
T ss_pred ccCcccceeeCCCCcc--ccccCcccccCccccEEECcCC
Confidence 4556666666655432 222222 23336666666554
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.07 E-value=1.6e-06 Score=79.83 Aligned_cols=152 Identities=15% Similarity=0.024 Sum_probs=99.8
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----e
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----S 232 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~ 232 (324)
..+.++++|++|+|.+..++.- -...+.++++|++|++.++.-. .+. .-..+++|++|++.+|..+..+.. .
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 3466789999999988776521 1122456889999999987532 211 113458899999998877776653 3
Q ss_pred cCCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeE
Q 020558 233 CPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHL 310 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (324)
.++|+.|.+.+.... -.+..+++|+.+++...... ......+..+++|+.|.++.+.+..+.......+++|++|
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP---EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS---EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcccccccccccccccEEECcCCcCc---ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 478999988776432 14667888998888762211 1112335688899999998776522211111678899999
Q ss_pred EEEec
Q 020558 311 MFMLV 315 (324)
Q Consensus 311 ~l~~~ 315 (324)
+|+.+
T Consensus 272 ~L~~N 276 (452)
T 3zyi_A 272 NLAHN 276 (452)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 98765
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.06 E-value=1.6e-06 Score=85.43 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCCCCCCCCCcEEEeeeEEeCHHHHH-HHHHcCCccceeEeecCCCcc--eEEEecccCCccEEEEecCCCcceEE----
Q 020558 158 PCGLSRVKSLRFLYFDTVNVTEEILE-FFINNCPNLDDLRVGRSDNLL--RLKVVGSLLQLKCLHIDHCNNLEELE---- 230 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~i~~c~~l~~l~---- 230 (324)
|..+..+++|++|+|+++.+.+..-. .-+..|++|++|++.+|.-.. ...+...+++|++|+++++. +....
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 171 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGW 171 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhh
Confidence 34566788888888888776532111 025678888888888773211 11111344677777776654 22211
Q ss_pred ---EecCCccEEEEcceeeE--EeeCCCCCceEEEEec
Q 020558 231 ---ISCPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 231 ---i~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~ 263 (324)
-..++|+.|.+.+.... ....++++|+.+++..
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~ 209 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCS
T ss_pred hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcC
Confidence 12355555555544321 1224455555555543
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.06 E-value=2e-06 Score=82.11 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=56.8
Q ss_pred cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEE---
Q 020558 156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELE--- 230 (324)
Q Consensus 156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~--- 230 (324)
.+|..+..+++|++|++.++.+++-. ...+..+++|++|++.++.....+. .-..+++|++|+++++. +..+.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence 34556667778888888777665321 1224567777777777764322111 11234667777666654 33332
Q ss_pred ---EecCCccEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558 231 ---ISCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 231 ---i~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~ 263 (324)
-..++|+.|.+.+.... ..+.++++|+.+++..
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 12356666666554321 1244555666665543
No 34
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.04 E-value=3.9e-06 Score=73.27 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=53.1
Q ss_pred ccEEEEEEeCCCCCcchHHHHHHHHHhcCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCC--CCCCCCcEEEee
Q 020558 96 VNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGL--SRVKSLRFLYFD 173 (324)
Q Consensus 96 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--~~~~~L~~L~L~ 173 (324)
++++.+.- .......+..........++++|++....-.. .. |..+ ..+++|++|+|.
T Consensus 66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~--------------~~~~~~~~~~~L~~L~Ls 125 (310)
T 4glp_A 66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG----TM--------------PPLPLEATGLALSSLRLR 125 (310)
T ss_dssp CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS----CC--------------CCCSSSCCCBCCSSCEEE
T ss_pred eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc----ch--------------hhhhhhccCCCCCEEEee
Confidence 55555522 22233445556665555679999997654321 01 1111 345666666666
Q ss_pred eEEeCHHH--HH-HHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558 174 TVNVTEEI--LE-FFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 174 ~~~~~~~~--l~-~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~ 224 (324)
++.+++.. +. .-+..+++|++|++.++.-.... ..-..+++|++|+++++.
T Consensus 126 ~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 126 NVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred cccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 66655310 11 11225666666666665321110 011133556666666554
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.03 E-value=6e-06 Score=78.80 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=75.7
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE------Eec
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE------ISC 233 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~------i~~ 233 (324)
.+..+++|++|++.++.++ .+..+ .+++|++|++.++.......+ ..+++|++|+++++. +..+. ...
T Consensus 302 ~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred hccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence 3456677777777777652 22232 677777777777754443322 234666666666554 22221 123
Q ss_pred CCccEEEEcceeeE---EeeCCCCCceEEEEecc-cCCc---------------------ccceeccccccCCCceEEEE
Q 020558 234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGG-HGIG---------------------KGKVIGPIVNYFPQLKTLEL 288 (324)
Q Consensus 234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~-~~~~---------------------~~~~~~~l~~~~~~L~~L~l 288 (324)
++|+.|.+.+.... -.+.++++|+.+++... .... ........+..+++|+.|.+
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 55555555544321 13444555555555431 0000 00011122456677777777
Q ss_pred EeeecceecccCC--CCCCcceeEEEEec
Q 020558 289 HVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 289 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
+.+.. .....|. ..+++|++|.++.+
T Consensus 456 ~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 456 AGNSF-KDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp TTCEE-GGGEECSCCTTCTTCCEEECTTS
T ss_pred CCCcC-CCcchHHhhccCCCCCEEECCCC
Confidence 66653 2112343 56677777777655
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.02 E-value=1.3e-06 Score=74.82 Aligned_cols=149 Identities=20% Similarity=0.189 Sum_probs=92.6
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecC
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCP 234 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p 234 (324)
.+..+++|++|+|.+..++.- -..++..+++|++|++.++.-.... ..-..+++|++|.++++. +..+.. ..+
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 356788888888887765421 1122456888888888877422110 111345788888888765 333321 347
Q ss_pred CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcc
Q 020558 235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPEL 307 (324)
Q Consensus 235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L 307 (324)
+|+.|.+.+.... ..+.++++|+.+++........ ....+..+++|+.|+++.+.+ ...+. ..+++|
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV---PEGAFDKLTELKTLKLDNNQL---KRVPEGAFDSLEKL 207 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe---ChhHhccCCCcCEEECCCCcC---CcCCHHHhccccCC
Confidence 8888888776432 1256788899988875221111 112345788999999987754 23333 567888
Q ss_pred eeEEEEecc
Q 020558 308 RHLMFMLVH 316 (324)
Q Consensus 308 ~~L~l~~~~ 316 (324)
++|.|+..+
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 888886543
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.01 E-value=2.4e-06 Score=78.39 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=96.6
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEE-E-ecCC
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELE-I-SCPS 235 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~-i-~~p~ 235 (324)
.+..+++|++|+|.+..++.- -...+..+++|++|++.+|.....+.- -..+++|++|+++++. +..+. + ..++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~ 208 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIK 208 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSS
T ss_pred HhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcc
Confidence 356788888888888765421 011245788889998888776655432 1345788888888775 34332 1 2368
Q ss_pred ccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcce
Q 020558 236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELR 308 (324)
Q Consensus 236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~ 308 (324)
|+.|.+.+.... ..+.++++|+.+++...... ......+..+++|+.|+|+.+.+ ...+. ..+++|+
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ---VIERNAFDNLQSLVEINLAHNNL---TLLPHDLFTPLHHLE 282 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTSSTTCTTCCEEECTTSCC---CCCCTTTTSSCTTCC
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCcee---EEChhhhcCCCCCCEEECCCCCC---CccChhHhccccCCC
Confidence 888888776432 24677888888888752211 11123356789999999988764 23333 5678899
Q ss_pred eEEEEecc
Q 020558 309 HLMFMLVH 316 (324)
Q Consensus 309 ~L~l~~~~ 316 (324)
+|+|+..+
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99886554
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.00 E-value=6.2e-06 Score=72.56 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcc--e-EEEecccCCccEEEEecCCCcceEEEe-cCCccEEE
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLL--R-LKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSFK 240 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~-l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L~ 240 (324)
++|++|++.+..++.- ....+.++++|++|++.++.-.. . ...-..+++|++|+++++. +..+... .++|+.|.
T Consensus 121 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~ 198 (330)
T 1xku_A 121 KTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELH 198 (330)
T ss_dssp TTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEE
T ss_pred ccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEE
Confidence 5566666665554321 11224456666666666553211 0 0001223555555555443 2221111 14555555
Q ss_pred EcceeeE----EeeCCCCCceEEEEec
Q 020558 241 YFGPEIK----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 241 ~~~~~~~----~~~~~~~~L~~l~l~~ 263 (324)
+.+.... ..+.++++|+.+++..
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 5443221 1244455555555543
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.00 E-value=1.4e-06 Score=83.14 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=70.4
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE---EecccCCccEEEEecCCCcceEEE----e
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK---VVGSLLQLKCLHIDHCNNLEELEI----S 232 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~i~~c~~l~~l~i----~ 232 (324)
.+..+++|++|++.++.+....-...+..+++|++|++.++.-..... .-..+++|++|+++++. +..+.. .
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE 398 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcC
Confidence 455667777777766643311111113456667777666654222110 01234556666665543 222210 1
Q ss_pred cCCccEEEEcceeeE-----------------------------EeeCCCCCceEEEEecccCCcccceeccccccCCCc
Q 020558 233 CPSLLSFKYFGPEIK-----------------------------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQL 283 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~-----------------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L 283 (324)
.++|+.|.+.+.... ..+.++++|+.+++...............+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 244555554443221 123344444444444311000000011234567777
Q ss_pred eEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 284 KTLELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 284 ~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
+.|+++.+... ...|. ..+++|++|.|+.+
T Consensus 479 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 479 EILVLSFCDLS--SIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CEEECTTSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccC--ccChhhhccccCCCEEECCCC
Confidence 77777766541 12222 66778888888665
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.00 E-value=1.3e-06 Score=77.42 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=86.3
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS 238 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~ 238 (324)
+..+++|++|++.++.+++ +.. +..+++|++|++.+|.-... ..-..+++|++|++++|.....+. -..++|+.
T Consensus 84 ~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD--ISA-LQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEECTTSCCCCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccC--chH-HcCCCcCCEEECcCCcccCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 5567777777777766543 222 55677777777777642211 112345777777777775433322 13367777
Q ss_pred EEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 239 FKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 239 L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
|.+.+.... ..+.++++|+.+++......... . +..+++|+.|.+..+.. ...+. ..+++|++|.++.+
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~l---~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS----P-LASLTSLHYFTAYVNQI---TDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG----G-GGGCTTCCEEECCSSCC---CCCGGGGGCTTCCEEECCSS
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCcccccc----c-ccCCCccceeecccCCC---CCCchhhcCCcCCEEEccCC
Confidence 777765432 12567778888777652211111 1 46788888888877653 22222 67789999998766
Q ss_pred c
Q 020558 316 H 316 (324)
Q Consensus 316 ~ 316 (324)
.
T Consensus 232 ~ 232 (347)
T 4fmz_A 232 K 232 (347)
T ss_dssp C
T ss_pred c
Confidence 3
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.99 E-value=4.8e-06 Score=78.49 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=74.1
Q ss_pred CCCCCCcEEEeeeEEeCHHH-HHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEE
Q 020558 162 SRVKSLRFLYFDTVNVTEEI-LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSF 239 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L 239 (324)
..+++|++|+|+++.+++-. ....+..+++|++|++.+|.-...-..-..+++|++|+++++. +..+.-.. ++|+.|
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVL 436 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEE
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEE
Confidence 34455555555555443211 1233445555555555555211100001123456666665554 32222111 466666
Q ss_pred EEcceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558 240 KYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH 316 (324)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 316 (324)
.+.+....-...++++|+++++....-.... . ...+++|+.|+++.+.. ...+. ..+++|++|+++.++
T Consensus 437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip----~-~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 437 DVSNNNLDSFSLFLPRLQELYISRNKLKTLP----D-ASLFPVLLVMKISRNQL---KSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSSCC----C-GGGCTTCCEEECCSSCC---CCCCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCChhhhcccCChhcEEECCCCccCcCC----C-cccCccCCEEecCCCcc---CCcCHHHHhcCcccCEEEecCCC
Confidence 6666543222356788888887752211111 1 23578888888887754 22222 577888888886554
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.97 E-value=3.8e-07 Score=72.15 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=72.3
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF 242 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~ 242 (324)
..++|++|+|.++.++++.+...+..+++|++|++.+|. ++.+..-..+++|++|+++++. +...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~------------- 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGG------------- 86 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSC-------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchH-------------
Confidence 357899999998887754455556778899999999885 2222222345677888877765 2220
Q ss_pred ceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc--CC-CCCCcceeEEEEecc
Q 020558 243 GPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF--PE-CDLPELRHLMFMLVH 316 (324)
Q Consensus 243 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~~~ 316 (324)
.+..+.++++|+.+++......... ....+..+++|+.|.++.+........ .. ..+++|++|.+..+.
T Consensus 87 ---~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 87 ---LDMLAEKLPNLTHLNLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ---CCHHHHHCTTCCEEECBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ---HHHHHhhCCCCCEEeccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 0111223555555555531111000 002234566666666666543111110 01 456666666666553
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.96 E-value=1.5e-06 Score=79.76 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=86.4
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCP 234 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p 234 (324)
+.++++|++|+|.+..++.- -...+..+++|++|++.++.-. .+. .-..+++|++|++.++..+..+.- ..+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred ccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 44567777777776655421 0112445677777777766421 110 112346777777777665555432 246
Q ss_pred CccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558 235 SLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF 312 (324)
Q Consensus 235 ~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (324)
+|+.|.+.+.... -.+.++++|+.+++...... ......+..+++|+.|.++.+.+..+.......+++|++|+|
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS---AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCCCccC---ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 7777777766432 13566777887777652111 111233567889999998877652221111167789999988
Q ss_pred Eec
Q 020558 313 MLV 315 (324)
Q Consensus 313 ~~~ 315 (324)
+.+
T Consensus 263 ~~N 265 (440)
T 3zyj_A 263 AHN 265 (440)
T ss_dssp TTS
T ss_pred CCC
Confidence 665
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.95 E-value=3.3e-06 Score=72.69 Aligned_cols=150 Identities=19% Similarity=0.262 Sum_probs=98.9
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccCCccEEEEecCCCcceEE---E-e
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCNNLEELE---I-S 232 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~~l~~l~---i-~ 232 (324)
..+..+++|++|+|.+..+++-. ...+.++++|++|++.++..++.+ ..-..+++|++|+++++. +..+. + .
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 127 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG 127 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred HHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC
Confidence 34677899999999887654311 112567899999999988644332 112345789999998876 33332 1 3
Q ss_pred cCCccEEEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558 233 CPSLLSFKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE 306 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~ 306 (324)
.++|+.|.+.+.... + .+.++++|+.+++...... ......+..+++|+.|.++.+... ...+. ..+++
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~ 202 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGR 202 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTT
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---ccCHHHhcCccccCEEECCCCccc--ccCHhHccCccc
Confidence 478999988876432 1 2667889999988752211 111223567899999999988652 22233 67889
Q ss_pred ceeEEEEec
Q 020558 307 LRHLMFMLV 315 (324)
Q Consensus 307 L~~L~l~~~ 315 (324)
|++|+++.+
T Consensus 203 L~~L~l~~n 211 (285)
T 1ozn_A 203 LMTLYLFAN 211 (285)
T ss_dssp CCEEECCSS
T ss_pred ccEeeCCCC
Confidence 999999765
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.92 E-value=1.8e-06 Score=76.79 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=87.0
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccCCccEEEEecCCCcceEEE----e
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCNNLEELEI----S 232 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~~l~~l~i----~ 232 (324)
..+..+++|++|+|.+..++.- -...+.++++|++|++.++.-...- ..-..+++|++|++.++..+..+.- .
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 3466778888888887766531 1123567788888888876322111 1123457888888887754454421 2
Q ss_pred cCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceec--ccCC-CCCC
Q 020558 233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEIL--QFPE-CDLP 305 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~ 305 (324)
.++|+.|.+.+.... -.+.++++|+.+++......... ..+...+++|+.|+++.+...... ..+. ....
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH---HHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch---hhhhhhcccccEEECCCCccccccccccccccccc
Confidence 367777777665321 24566777888877752221111 122345788888888877652111 1111 3456
Q ss_pred cceeEEEEec
Q 020558 306 ELRHLMFMLV 315 (324)
Q Consensus 306 ~L~~L~l~~~ 315 (324)
.++.+.+...
T Consensus 250 ~l~~l~L~~~ 259 (353)
T 2z80_A 250 LIKKFTFRNV 259 (353)
T ss_dssp CCCEEEEESC
T ss_pred hhhccccccc
Confidence 6777776554
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.90 E-value=5.1e-06 Score=76.84 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS 238 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~ 238 (324)
+..+++|++|++.++.+.+-. . +..+++|++|++.+|.-. .+.--..+++|++|++++|. +..+. -..++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCCC-CChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 556667777777666654321 1 556677777777666321 11112344667777776654 22211 12366666
Q ss_pred EEEcceeeE-EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 239 FKYFGPEIK-LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 239 L~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
|.+...... ..+.++++|+.+++........ ..+..+++|+.|.++.+.. ...+. ..+++|++|.++.+
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCC---CCCGGGGGCTTCCEEECCSS
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcc---cccccccccCCCCEEECCCC
Confidence 666432221 1356677777777765221111 1256778888888877653 22222 56788888888765
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.90 E-value=6.5e-07 Score=78.36 Aligned_cols=148 Identities=18% Similarity=0.144 Sum_probs=97.6
Q ss_pred CCCCCCcEEEeeeEEeCHH--HHHHHHH-cCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcce------EE-
Q 020558 162 SRVKSLRFLYFDTVNVTEE--ILEFFIN-NCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEE------LE- 230 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~------l~- 230 (324)
..+++|++|+|.+..+++. .+..+.. ..++|++|++.++.-.... ..-..+++|++|+++++.-.+. +.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 6799999999999987653 3433221 2489999999998532211 1112458999999998863222 11
Q ss_pred EecCCccEEEEcceeeE-------EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCCC
Q 020558 231 ISCPSLLSFKYFGPEIK-------LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPEC 302 (324)
Q Consensus 231 i~~p~L~~L~~~~~~~~-------~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 302 (324)
-..++|+.|.+.+.... ..+.++++|+.+++... ..... .......+++|+.|.++.+.+ ..+|..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~N~l---~~ip~~ 271 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---GAPSCDWPSQLNSLNLSFTGL---KQVPKG 271 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---CCSCCCCCTTCCEEECTTSCC---SSCCSS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---chhhhhhcCCCCEEECCCCcc---Chhhhh
Confidence 24589999999877542 12346789999999862 21111 112234679999999998865 355553
Q ss_pred CCCcceeEEEEec
Q 020558 303 DLPELRHLMFMLV 315 (324)
Q Consensus 303 ~~~~L~~L~l~~~ 315 (324)
.+++|++|+++..
T Consensus 272 ~~~~L~~L~Ls~N 284 (312)
T 1wwl_A 272 LPAKLSVLDLSYN 284 (312)
T ss_dssp CCSEEEEEECCSS
T ss_pred ccCCceEEECCCC
Confidence 3389999999765
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.90 E-value=2.7e-05 Score=70.12 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=74.6
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCC-------------------ccEEEEec
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQ-------------------LKCLHIDH 222 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~-------------------L~~L~i~~ 222 (324)
..+++|++|++.+..++.-. ...+..+++|++|++.++.-. .+. ....++ |++|++++
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred cCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCC-ccc-cccccccceeecccccccccCCCCcceEEECCC
Confidence 45666666666665543210 111345666666666665311 111 112234 44444444
Q ss_pred CCCcceEEEec-CCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc
Q 020558 223 CNNLEELEISC-PSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF 299 (324)
Q Consensus 223 c~~l~~l~i~~-p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 299 (324)
+. +..+.... ++|+.|.+.+.... -.+.++++|+++++...... ......+..+++|+.|.++.+... ..
T Consensus 215 n~-l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~---~~ 287 (390)
T 3o6n_A 215 NS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE---KIMYHPFVKMQRLERLYISNNRLV---AL 287 (390)
T ss_dssp SC-CCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---EEESGGGTTCSSCCEEECCSSCCC---EE
T ss_pred Ce-eeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC---CcChhHccccccCCEEECCCCcCc---cc
Confidence 33 23322211 45666666554321 13556677777777652111 112233557788888888877542 22
Q ss_pred CC--CCCCcceeEEEEec
Q 020558 300 PE--CDLPELRHLMFMLV 315 (324)
Q Consensus 300 ~~--~~~~~L~~L~l~~~ 315 (324)
+. ..+++|++|.++.+
T Consensus 288 ~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ECSSSCCTTCCEEECCSS
T ss_pred CcccCCCCCCCEEECCCC
Confidence 33 57888999988766
No 49
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.89 E-value=5.6e-06 Score=69.30 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecC
Q 020558 161 LSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHC 223 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c 223 (324)
+..+++|++|+|.+.. ++.-. ...+.++++|++|++.+|..++.+.- -..+++|++|++.++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 3455666666666553 32100 00124556666666665444433211 113355555555554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.89 E-value=1.8e-05 Score=70.25 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCP 234 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p 234 (324)
+..+++|++|+|.+..++.-.-...+..+++|++|++.++...+.+. .-..+++|++|+++++. +..+.. ..+
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~ 198 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQ 198 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCS
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccc
Confidence 34566666666665554320000123456666666666654333221 11233566666666554 222211 124
Q ss_pred CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecc--eecccCC--CCCCc
Q 020558 235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNE--EILQFPE--CDLPE 306 (324)
Q Consensus 235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~--~~~~~ 306 (324)
+|+.|.+.+.... ..+..+++|+.+++...................+.++.+.++..... .....|. ..+++
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 5555555544321 11223566666666541111000000011223455555655544431 1111222 45566
Q ss_pred ceeEEEEec
Q 020558 307 LRHLMFMLV 315 (324)
Q Consensus 307 L~~L~l~~~ 315 (324)
|++|+++.+
T Consensus 279 L~~L~Ls~N 287 (353)
T 2z80_A 279 LLELEFSRN 287 (353)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 666666544
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.89 E-value=1.3e-05 Score=75.60 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=80.9
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcc--eEEEecccCCccEEEEecCCCcceEEE----e
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLL--RLKVVGSLLQLKCLHIDHCNNLEELEI----S 232 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~i~~c~~l~~l~i----~ 232 (324)
..+..+++|++|+|++..+++- ....+.++++|++|++.++.-.. ....-..+++|++|++.++..+..+.. .
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 3467789999999998876542 12235778999999999874321 111223557899999988764454431 2
Q ss_pred cCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
.++|+.|.+.+.... -.++++++|+.+++.......... .+...+++|+.|+++.+..
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILSSVRYLELRDTNL 208 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH---HHHHSTTTBSEEEEESCBC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccccch---hhHhhcccccEEEccCCcc
Confidence 477888887765332 235667777777776522211111 1233567777777776654
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.88 E-value=4.6e-06 Score=82.10 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=63.9
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE---Ee-cCCc
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE---IS-CPSL 236 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~---i~-~p~L 236 (324)
+..+++|++|+|.++.+++. +..-+..+++|++|++.+|.-....... .+++|++|++.+|.-...+. .. +++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 77899999999999887643 3334678999999999998643222111 45778888887664111111 11 2677
Q ss_pred cEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558 237 LSFKYFGPEIK----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~ 263 (324)
+.|.+.+.... -.++++++|+.+++..
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 77776665432 2355666666666654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.88 E-value=9.4e-06 Score=70.55 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=66.1
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcceEE---EecCCcc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEELE---ISCPSLL 237 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L~ 237 (324)
.++|++|+|.+..+++- -...+..+++|++|++.++.-...- .....+++|++|+++++. +..+. ...++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence 47899999998876521 1123568999999999988532110 111245899999999876 44432 2458999
Q ss_pred EEEEcceeeE-----EeeCCCCCceEEEEec
Q 020558 238 SFKYFGPEIK-----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 238 ~L~~~~~~~~-----~~~~~~~~L~~l~l~~ 263 (324)
.|.+.+.... ..+.++++|+.+++..
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCC
Confidence 9988776442 1356678888887765
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.87 E-value=3.2e-06 Score=72.27 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=96.9
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS 238 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 238 (324)
++|++|+|.+..++.-. ...+.++++|++|++.++.-. .+. +-..+++|++|+++++. +..+.. ..++|+.
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence 68999999988765311 112567899999999987422 211 11345899999999876 444431 3489999
Q ss_pred EEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEE
Q 020558 239 FKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLM 311 (324)
Q Consensus 239 L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ 311 (324)
|.+.+.... -.+.++++|+.+++....... .....+..+++|+.|.++.+.+ ...+. ..+++|++|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQL---KRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEE
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---cCHhHccCCcccceeEecCCcC---cEeChhHhccCCCcCEEE
Confidence 999876432 136789999999998632111 1123356889999999998764 22332 6788999999
Q ss_pred EEec
Q 020558 312 FMLV 315 (324)
Q Consensus 312 l~~~ 315 (324)
|+.+
T Consensus 188 L~~N 191 (270)
T 2o6q_A 188 LDNN 191 (270)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9766
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.86 E-value=6.5e-06 Score=71.25 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE----ecCCc
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI----SCPSL 236 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 236 (324)
+..+++|++|+|.+..++.- .. ...+++|++|++.++.-...-.....+++|++|.++++. +..+.- ..++|
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL 126 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred hhcCCCCCEEECCCCccCcc--cC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence 44555556665555443321 00 134555666665554321111111233556666665543 232221 22556
Q ss_pred cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeE
Q 020558 237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHL 310 (324)
Q Consensus 237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L 310 (324)
+.|.+.+.... -.+.++++|+.+++...... .....++..+++|+.|.++.+.+ ..+|. ....+|++|
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~l~~~~~~~l~~L~~L~L~~N~l---~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFA 200 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCCCSEE
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCC---ccCHHHhcCcCCCCEEECCCCcC---CccChhhcccccCCeE
Confidence 66665554321 12344556666665541111 11112344567777777766643 23444 444567777
Q ss_pred EEEe
Q 020558 311 MFML 314 (324)
Q Consensus 311 ~l~~ 314 (324)
.|..
T Consensus 201 ~L~~ 204 (290)
T 1p9a_G 201 FLHG 204 (290)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 7653
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.85 E-value=4.4e-06 Score=73.01 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE----EE-ecccCCccEEEEecCCCcce---EE----Ee
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL----KV-VGSLLQLKCLHIDHCNNLEE---LE----IS 232 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l----~i-~~~~~~L~~L~i~~c~~l~~---l~----i~ 232 (324)
++|++|+|.+..++.-.- ..+..+++|++|++.++.-.+.. .+ ...+++|++|+++++. +.. +. -.
T Consensus 149 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhc
Confidence 899999999988754211 22567999999999998633221 11 1456899999999886 442 11 13
Q ss_pred cCCccEEEEcceeeE-----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCc
Q 020558 233 CPSLLSFKYFGPEIK-----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPE 306 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 306 (324)
.++|+.|.+.+.... ..+..+++|+.+++....-......+ . ++|+.|+++.+.+ ...|. ..+++
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~---~---~~L~~L~Ls~N~l---~~~p~~~~l~~ 297 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---P---AKLSVLDLSYNRL---DRNPSPDELPQ 297 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC---C---SEEEEEECCSSCC---CSCCCTTTSCE
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc---c---CCceEEECCCCCC---CCChhHhhCCC
Confidence 489999999876432 13445789999999862211111111 1 7999999998865 33365 78899
Q ss_pred ceeEEEEecchhh
Q 020558 307 LRHLMFMLVHLIV 319 (324)
Q Consensus 307 L~~L~l~~~~~i~ 319 (324)
|++|+++.. +++
T Consensus 298 L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 298 VGNLSLKGN-PFL 309 (312)
T ss_dssp EEEEECTTC-TTT
T ss_pred CCEEeccCC-CCC
Confidence 999998654 444
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.84 E-value=3.3e-06 Score=77.45 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=35.6
Q ss_pred ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558 13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL 50 (324)
Q Consensus 13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l 50 (324)
..|.++.||+||+.+||+||+.++++++++|||+|+++
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999864
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.84 E-value=4.2e-06 Score=71.63 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=100.8
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS 238 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 238 (324)
.+++|+.|.+.+..+++ +.. +..+++|++|++.++.-. .+..-..+++|++|+++++. +..+.- ..++|+.
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQG-IQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccc--ccc-cccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 57899999999887653 222 677999999999998532 22222456899999999886 444432 3489999
Q ss_pred EEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEE
Q 020558 239 FKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLM 311 (324)
Q Consensus 239 L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ 311 (324)
|.+.+.... + .+.++++|+.+++...... ......+..+++|+.|.++.+.+ ...+. ..+++|++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQL---QSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEE
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccC---ccCHHHhccCccCCEEECCCCCc---CccCHHHhcCCccCCEEE
Confidence 999887542 1 2678899999999863211 11123356889999999998864 23333 6789999999
Q ss_pred EEecc
Q 020558 312 FMLVH 316 (324)
Q Consensus 312 l~~~~ 316 (324)
++.+.
T Consensus 188 L~~N~ 192 (272)
T 3rfs_A 188 LYQNQ 192 (272)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 97663
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.83 E-value=2.4e-05 Score=73.95 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=24.0
Q ss_pred cccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 277 VNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
+..+++|+.|.++.+.. .....|. ..+++|++|.|+.+
T Consensus 441 ~~~l~~L~~L~l~~n~l-~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTS
T ss_pred hhcCCcCcEEECcCCcC-ccccchhhhhcccCCCEEECCCC
Confidence 45677777777776654 2123344 66778888877655
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.83 E-value=9.2e-06 Score=75.01 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe-cCCccEE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSF 239 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L 239 (324)
+..+++|++|++.+..+++- . +..+++|++|++.+|...+.+.+ ..+++|+.|+++++. +..+.+. .++|+.|
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L 196 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRL 196 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEE
T ss_pred CCCCCcCCEEECCCCcccee--c--cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEE
Confidence 34556666666665554431 1 44566666666666644333322 233566666666554 3333332 2566666
Q ss_pred EEcceee-EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 240 KYFGPEI-KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 240 ~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
.+.+... .+.++++++|+.+++........ . +..+++|+.|.++.+..
T Consensus 197 ~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-----p-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 197 NCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-----D-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-----C-CTTCTTCSEEECCSSCC
T ss_pred ECcCCcCCeeccccCCCCCEEECcCCccccc-----C-ccccCCCCEEEeeCCcC
Confidence 6555432 12355566666666654111111 1 34556666666655543
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.83 E-value=2.5e-05 Score=65.31 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEE----EecCCccE
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELE----ISCPSLLS 238 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~ 238 (324)
++|++|+|.+..++.-. ...+.++++|++|++.++..++.+. .-..+++|++|++.+|..+..+. -..++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 58999999988765311 1125679999999999986444432 11356899999999866676654 24589999
Q ss_pred EEEcceeeE-E-eeCCCCCce---EEEEecc-cCCcccceeccccccCCCce-EEEEEeeecceecccCC--CCCCccee
Q 020558 239 FKYFGPEIK-L-HVKNVPQLV---DVLIGGG-HGIGKGKVIGPIVNYFPQLK-TLELHVELNEEILQFPE--CDLPELRH 309 (324)
Q Consensus 239 L~~~~~~~~-~-~~~~~~~L~---~l~l~~~-~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~--~~~~~L~~ 309 (324)
|.+.+.... + .+.++++|+ .+++... ... ......+..+++|+ .|+++.+... ..|. ...++|++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~---~i~~~~~~~l~~L~~~L~l~~n~l~---~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT---SIPVNAFQGLCNETLTLKLYNNGFT---SVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC---EECTTTTTTTBSSEEEEECCSCCCC---EECTTTTTTCEEEE
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchh---hcCcccccchhcceeEEEcCCCCCc---ccCHhhcCCCCCCE
Confidence 998876431 1 255666666 7777642 211 11112245677777 7777665441 2222 11256666
Q ss_pred EEEEec
Q 020558 310 LMFMLV 315 (324)
Q Consensus 310 L~l~~~ 315 (324)
|.++.+
T Consensus 184 L~L~~n 189 (239)
T 2xwt_C 184 VYLNKN 189 (239)
T ss_dssp EECTTC
T ss_pred EEcCCC
Confidence 666554
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.83 E-value=5.3e-06 Score=78.47 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCCCCCcEEEeeeEEeCHHH-HHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecC
Q 020558 162 SRVKSLRFLYFDTVNVTEEI-LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHC 223 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c 223 (324)
..+++|++|++.+..++... ....+.++++|++|++.+|.-......-..+++|++|++.++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCC
Confidence 35666777766655543210 012245667777777776642211111223455555555543
No 63
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=7.2e-06 Score=69.87 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=59.6
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCcc
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLL 237 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~ 237 (324)
++..+++|++|+|.+..+++- .. +..+++|++|++.++.-...-.+.. ++|++|.++++. +..+. + ..++|+
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~l~~l~~L~ 131 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDSLIHLKNLE 131 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGGGTTCTTCC
T ss_pred HHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCChhhcCccccc
Confidence 345566777777766665431 11 5566777777777653211101111 566666666654 22221 1 235555
Q ss_pred EEEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 238 SFKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 238 ~L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
.|.+.+.... + .+..+++|+.+++........ ..+..+++|+.|+++.+..
T Consensus 132 ~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 132 ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCEEEEEEEEE
T ss_pred EEECCCCcCCCChHHccCCCCCEEECCCCcCcch-----HHhccCCCCCEEeCCCCcc
Confidence 6655544321 0 244555566555554111100 2244556666666655543
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.82 E-value=1.2e-05 Score=74.34 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=91.8
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe-cCCccEE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSF 239 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L 239 (324)
+..+++|++|++.+..+++ +. +..+++|++|++.++.-. .+.+ ..+++|+.|.++++..+..+.+. .++|+.|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~-~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLT-EIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCS-CCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccc-eecc-ccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 4567888888888777654 21 567788888888876422 2222 34578888888887655555443 3788888
Q ss_pred EEcceee-EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558 240 KYFGPEI-KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLV 315 (324)
Q Consensus 240 ~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (324)
.+.+... .+.+..+++|+.+++........ . +..+++|+.|+++.+.... .|...+++|++|.++.+
T Consensus 176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~--~----l~~l~~L~~L~Ls~N~l~~---ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL--D----LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp ECCSSCCCCCCCTTCTTCCEEECCSSCCSCC--C----CTTCTTCSEEECCSSCCSC---CCCTTCTTCSEEECCSS
T ss_pred ECCCCccceeccccCCCCCEEECcCCcCCee--c----cccCCCCCEEECcCCcccc---cCccccCCCCEEEeeCC
Confidence 8877643 23477788888888876221111 1 4578999999998876522 33456677777777554
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.79 E-value=7.6e-06 Score=71.56 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=69.6
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccC-CccEEEEecCCCcceEE---Ee
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLL-QLKCLHIDHCNNLEELE---IS 232 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~-~L~~L~i~~c~~l~~l~---i~ 232 (324)
..+..+++|++|+|.+..+++. +...+..+++|++|++.++.-...+ .+. .++ .|++|+++++. +.... +.
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~-l~~~~~~~~~ 195 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR-LTGKIPPTFA 195 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE-EEEECCGGGG
T ss_pred HHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe-eeccCChHHh
Confidence 3345667777777776665421 1122455677777777766422111 111 122 66777666543 11110 11
Q ss_pred cCCccEEEEcceeeE----EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCC
Q 020558 233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLP 305 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~ 305 (324)
..+|+.|.+.+.... ..+.++++|+.+++... ...... -+..+++|+.|+++.+.+ ....|. ..++
T Consensus 196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l--~~~~p~~l~~l~ 268 (313)
T 1ogq_A 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRI--YGTLPQGLTQLK 268 (313)
T ss_dssp GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCC--EECCCGGGGGCT
T ss_pred CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEEECcCCcc--cCcCChHHhcCc
Confidence 123666666554332 13455666666666541 111000 023456666666665543 112333 4555
Q ss_pred cceeEEEEec
Q 020558 306 ELRHLMFMLV 315 (324)
Q Consensus 306 ~L~~L~l~~~ 315 (324)
+|++|+|+.+
T Consensus 269 ~L~~L~Ls~N 278 (313)
T 1ogq_A 269 FLHSLNVSFN 278 (313)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECcCC
Confidence 6666655443
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.79 E-value=5.9e-07 Score=81.03 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=17.1
Q ss_pred CCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecC
Q 020558 163 RVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRS 200 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c 200 (324)
.+++|++|+|+++.+++.+ +...+..|++|++|+|.+|
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 3445555555554444321 2223344555555555544
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.79 E-value=5e-06 Score=70.25 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=69.2
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCCccEE
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPSLLSF 239 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~L 239 (324)
++|++|+|.+..++.-. ...+.++++|++|++.++.-.... ..-..+++|++|+++++. +..+. -..++|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 45666666655543211 011345566666666654311110 001233566666665543 22222 123566666
Q ss_pred EEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEE
Q 020558 240 KYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMF 312 (324)
Q Consensus 240 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l 312 (324)
.+.+.... ..+.++++|+.+++....... .....+..+++|+.|+|+.+.+ ...+. ..+++|++|.|
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS---IPAGAFDKLTNLQTLSLSTNQL---QSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEEC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCc---cCHHHcCcCcCCCEEECCCCcC---CccCHHHHhCCCCCCEEEe
Confidence 66554321 124566777777776521111 1112244667777777776654 22222 56677777777
Q ss_pred Eec
Q 020558 313 MLV 315 (324)
Q Consensus 313 ~~~ 315 (324)
+..
T Consensus 187 ~~N 189 (251)
T 3m19_A 187 FGN 189 (251)
T ss_dssp CSC
T ss_pred eCC
Confidence 554
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.78 E-value=4e-05 Score=69.00 Aligned_cols=145 Identities=18% Similarity=0.194 Sum_probs=95.8
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCC--------cceEEE---------ecccCCccEEEEec
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDN--------LLRLKV---------VGSLLQLKCLHIDH 222 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~--------~~~l~i---------~~~~~~L~~L~i~~ 222 (324)
.+..+++|++|++.+..++.-. +..++.|+.|++.++.- ++.+.+ ....++|+.|++.+
T Consensus 160 ~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390)
T ss_dssp TTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred hccCCCCCCEEECCCCcCCccc----cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence 4677889999999888765432 34567777776665421 111111 12236899999988
Q ss_pred CCCcceEE--EecCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeeccee
Q 020558 223 CNNLEELE--ISCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEI 296 (324)
Q Consensus 223 c~~l~~l~--i~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 296 (324)
+. +..+. -..|+|+.|.+.+.... ..+.++++|+.+++....... +......+++|+.|+++.+..
T Consensus 236 n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~L~~n~l--- 307 (390)
T 3o6n_A 236 NN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHL--- 307 (390)
T ss_dssp SC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE----EECSSSCCTTCCEEECCSSCC---
T ss_pred CC-CcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc----cCcccCCCCCCCEEECCCCcc---
Confidence 76 33322 13489999999887532 257789999999998622111 112235789999999998864
Q ss_pred cccCC--CCCCcceeEEEEecc
Q 020558 297 LQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 297 ~~~~~--~~~~~L~~L~l~~~~ 316 (324)
...|. ..+++|++|+++.+.
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSC
T ss_pred eecCccccccCcCCEEECCCCc
Confidence 23443 678999999997764
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.76 E-value=5.3e-06 Score=71.80 Aligned_cols=143 Identities=19% Similarity=0.235 Sum_probs=91.1
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE---ecCCccEEE
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI---SCPSLLSFK 240 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~L~ 240 (324)
.++++.|+|.+..++.-. ...+..+++|++|++.++. ++.+.....+++|++|+++++. +..+.- ..++|+.|.
T Consensus 30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence 367888888877654311 1225668888888888874 3333333566888888888765 333321 347888888
Q ss_pred EcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEE
Q 020558 241 YFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFM 313 (324)
Q Consensus 241 ~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~ 313 (324)
+.+.... -.+.++++|+.+++...... ......+..+++|+.|.++.+.+ ...|. ..+++|++|.|+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELK---TLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCC---ccChhhcccccCCCEEECCCCcC---CccCHHHhcCcCCCCEEECC
Confidence 8776432 23667888888888762211 11123345778888888887754 33443 567888888886
Q ss_pred ec
Q 020558 314 LV 315 (324)
Q Consensus 314 ~~ 315 (324)
..
T Consensus 181 ~N 182 (290)
T 1p9a_G 181 EN 182 (290)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.76 E-value=7e-06 Score=75.92 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~ 224 (324)
+..+++|++|++.++.+++- . -+..+++|++|++.+|.-..... -..+++|++|.++++.
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 276 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred ccccCCCCEEECCCCCcccc--h-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc
Confidence 34567777777777665431 1 14567777777777664221111 2234555666555543
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.75 E-value=1e-06 Score=79.41 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEeeeEEeC------HHHHH---HHHHcCCccceeEeecCCCcc----eE-EEecccCCccEEEEecCCCc
Q 020558 161 LSRVKSLRFLYFDTVNVT------EEILE---FFINNCPNLDDLRVGRSDNLL----RL-KVVGSLLQLKCLHIDHCNNL 226 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~------~~~l~---~ll~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~i~~c~~l 226 (324)
+..+++|++|+|.++.+. ..++. ..+..+++|++|+|.++.-.. .+ ..-..+++|++|++++|. +
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence 445666666666654322 11222 223456666666666653211 00 011234667777776665 2
Q ss_pred ceEE---E-ec-------------CCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCc--ccceecccccc
Q 020558 227 EELE---I-SC-------------PSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIG--KGKVIGPIVNY 279 (324)
Q Consensus 227 ~~l~---i-~~-------------p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~--~~~~~~~l~~~ 279 (324)
.... + .+ |+|++|.+.+.... -.+..+++|+.+++....... ....+...+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 2100 0 01 67777777655321 123456677777776421110 00011114567
Q ss_pred CCCceEEEEEeeecce--ecccCC--CCCCcceeEEEEecc
Q 020558 280 FPQLKTLELHVELNEE--ILQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 280 ~~~L~~L~l~~~~~~~--~~~~~~--~~~~~L~~L~l~~~~ 316 (324)
+++|+.|.|+.+.+.. ...++. ..+++|++|.|+.+.
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 7888888887776410 122333 677788888886663
No 72
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.75 E-value=1.3e-05 Score=76.39 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE-ecCCccEE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI-SCPSLLSF 239 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~L 239 (324)
+..+++|+.|.+.+..+.. +. -+..+++|++|++.+|.-...-.+ .+++|++|.+.++.....+.+ ..|+|+.|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~--l~-~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY--LE-DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC--CC-CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchh--hh-hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 5678999999999887643 22 356789999999999865221122 568999999999865554433 44899999
Q ss_pred EEcceeeE------EeeCCCCCceEEEEec
Q 020558 240 KYFGPEIK------LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 240 ~~~~~~~~------~~~~~~~~L~~l~l~~ 263 (324)
.+.+.... ..+.++++|+.+++..
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 99877432 2456889999999876
No 73
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.73 E-value=4e-05 Score=70.36 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=79.2
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCCC-------------------------cceEEE-------
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSDN-------------------------LLRLKV------- 208 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~-------------------------~~~l~i------- 208 (324)
.+++|++|++.+..+++.....+.. ..+.|+.|.+.++.. ++.+.+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 4578999999998887654444332 235556665554421 111110
Q ss_pred -----ecccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceecc
Q 020558 209 -----VGSLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGP 275 (324)
Q Consensus 209 -----~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 275 (324)
-..+++|++|+++++. +..+.. ..++|+.|.+.+.... ..+.++++|+.+++...... ....+
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~ 365 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR---ALGDQ 365 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC---EECTT
T ss_pred cchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc---ccChh
Confidence 1233566666666554 333321 2366777776655321 13556677777777642111 11112
Q ss_pred ccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558 276 IVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV 315 (324)
Q Consensus 276 l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~ 315 (324)
.+..+++|+.|+++.+.+ ...+. ..+++|++|.|+..
T Consensus 366 ~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSS
T ss_pred hccccccccEEECCCCcc---ccCCHhHhccCCcccEEEccCC
Confidence 245677888888877653 23333 56677888877654
No 74
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.72 E-value=9.6e-06 Score=74.51 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=23.5
Q ss_pred cccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 277 VNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
+..+++|+.|+++.+.+ ....|. ..+++|++|+++.+
T Consensus 343 ~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp GTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCCcc--cccChhhccccccccEEECCCC
Confidence 45677777777777654 111222 56778888888664
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.70 E-value=1.3e-05 Score=70.42 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=78.0
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE----EecCC
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE----ISCPS 235 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~ 235 (324)
.+..+++|++|+|.+..+++-. ..-+..+++|++|++.++.- +.+... ..++|++|.++++. +..+. -..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQ 146 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred hhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChh-hcccccEEECCCCc-ccccCHhHhcCCcc
Confidence 4566777777777766554210 11145667777777776632 111111 12567777776654 33322 12367
Q ss_pred ccEEEEcceeeE------EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcc
Q 020558 236 LLSFKYFGPEIK------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPEL 307 (324)
Q Consensus 236 L~~L~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L 307 (324)
|+.|.+.+.... ..+.++++|+.+++.......... ...++|+.|.++.+.+.. ..+. ..+++|
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L 218 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLPPSLTELHLDGNKITK--VDAASLKGLNNL 218 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS------SCCTTCSEEECTTSCCCE--ECTGGGTTCTTC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc------cccccCCEEECCCCcCCc--cCHHHhcCCCCC
Confidence 777776654321 134566777777776521111111 112678888887765411 1122 677889
Q ss_pred eeEEEEec
Q 020558 308 RHLMFMLV 315 (324)
Q Consensus 308 ~~L~l~~~ 315 (324)
++|.++.+
T Consensus 219 ~~L~Ls~n 226 (330)
T 1xku_A 219 AKLGLSFN 226 (330)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 99988765
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.69 E-value=7.2e-06 Score=71.72 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=97.0
Q ss_pred CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcc-eEE--E-e
Q 020558 158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLE-ELE--I-S 232 (324)
Q Consensus 158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~-~l~--i-~ 232 (324)
|..+..+++|++|+|.+..+++. +..-+..+++|++|++.++.-...+ ..-..+++|++|+++++. +. .+. + .
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~ 171 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGS 171 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGC
T ss_pred ChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhh
Confidence 34456789999999998876521 1122567899999999987422111 111345899999998876 33 221 1 2
Q ss_pred cC-CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCc
Q 020558 233 CP-SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPE 306 (324)
Q Consensus 233 ~p-~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 306 (324)
.+ +|+.|.+.+.... -.+..++ |+.+++...... ......+..+++|+.|.++.+.. ....+. ..+++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~l~~ 245 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE---GDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKN 245 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE---ECCGGGCCTTSCCSEEECCSSEE--CCBGGGCCCCTT
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc---CcCCHHHhcCCCCCEEECCCCce--eeecCcccccCC
Confidence 33 8999998876542 1344555 888888752111 11224456899999999998865 222333 67889
Q ss_pred ceeEEEEecc
Q 020558 307 LRHLMFMLVH 316 (324)
Q Consensus 307 L~~L~l~~~~ 316 (324)
|++|.++.+.
T Consensus 246 L~~L~Ls~N~ 255 (313)
T 1ogq_A 246 LNGLDLRNNR 255 (313)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECcCCc
Confidence 9999997663
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.69 E-value=9.3e-06 Score=77.57 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=32.7
Q ss_pred eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558 250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 316 (324)
+.++++|+.+++...... ......+..+++|+.|.|+.+.+. ..|. ..+++|++|.|+.+.
T Consensus 250 l~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELE---KIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp GGGCTTCSEEECCSSCCC---EEESGGGTTCSSCCEEECTTSCCC---EEECSSSCCTTCCEEECCSSC
T ss_pred hccCCCCCEEECCCCccC---CCCHHHhcCccCCCEEECCCCCCC---CCCcccccCCCCcEEECCCCC
Confidence 344555555555531110 111123456777777777766541 2233 567788888887653
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.66 E-value=2.5e-05 Score=71.33 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=35.3
Q ss_pred ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhh
Q 020558 13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKY 49 (324)
Q Consensus 13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~ 49 (324)
..|.++.||+|++.+||+||+.+|++++++|||+|+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 4689999999999999999999999999999999986
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.65 E-value=7.5e-06 Score=70.87 Aligned_cols=140 Identities=17% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK 240 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~ 240 (324)
.+++|++|++.++.+.+ +.. +..+++|++|++.++.-..... -..+++|++|.++++. +..+. + ..++|+.|.
T Consensus 44 ~l~~L~~L~l~~~~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCccc--Chh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEE
Confidence 57899999999887653 222 6789999999999985322111 3456899999999876 33321 1 348999999
Q ss_pred EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
+.+.... -.+.++++|+.+++........ ..+..+++|+.|.++.+.+ ...+. ..+++|++|.++.+
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l---~~~~~l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKN 188 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCC---CCCGGGTTCTTCCEEECCSS
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCcc---ccchhhcCCCccCEEECCCC
Confidence 8877542 1366789999999986221111 3467899999999998864 22333 78899999999766
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.64 E-value=1.6e-06 Score=79.88 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=91.6
Q ss_pred CCCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCCCcce-E-EEecccC----CccEEEEecCCCcce----
Q 020558 162 SRVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSDNLLR-L-KVVGSLL----QLKCLHIDHCNNLEE---- 228 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~~~~~----~L~~L~i~~c~~l~~---- 228 (324)
..+++|++|+|.++.+++.. +...+..+++|++|++.++.-... . .+...++ +|++|++++|. +..
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence 45788888888888887753 445567788888888888742110 0 1111222 68888888876 331
Q ss_pred -E---EEecCCccEEEEcceeeE---------EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecc
Q 020558 229 -L---EISCPSLLSFKYFGPEIK---------LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNE 294 (324)
Q Consensus 229 -l---~i~~p~L~~L~~~~~~~~---------~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 294 (324)
+ --..++|+.|.+.+.... ......++|+++++... ........+.+.+..+++|+.|.++.+...
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 1 124578888888776431 01223567888888752 211111223445567889999999877652
Q ss_pred ee--cccCC---CCCCcceeEEEEec
Q 020558 295 EI--LQFPE---CDLPELRHLMFMLV 315 (324)
Q Consensus 295 ~~--~~~~~---~~~~~L~~L~l~~~ 315 (324)
.. ..+.. ...++|++|+++.+
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCC
Confidence 11 11111 24668999998776
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=7.6e-06 Score=81.27 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCcEEEeeeEEeCHH----------------HHHHHHH--cCCccceeEeecCCCcceEE-EecccCCccE
Q 020558 157 SPCGLSRVKSLRFLYFDTVNVTEE----------------ILEFFIN--NCPNLDDLRVGRSDNLLRLK-VVGSLLQLKC 217 (324)
Q Consensus 157 l~~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~ 217 (324)
+|..+..+++|++|+|++..++++ .+..-+. ++++|++|+|.+|.-...+. .-..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 455666777777777777776652 1222222 67777777777764322111 1123356666
Q ss_pred EEEecCC
Q 020558 218 LHIDHCN 224 (324)
Q Consensus 218 L~i~~c~ 224 (324)
|+++++.
T Consensus 520 L~Ls~N~ 526 (876)
T 4ecn_A 520 LNIACNR 526 (876)
T ss_dssp EECTTCT
T ss_pred EECcCCC
Confidence 6665554
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.63 E-value=0.00024 Score=70.64 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCCCCCCCcEEEeeeEEeCH---HHHHHHHHcCCccceeEeecC
Q 020558 159 CGLSRVKSLRFLYFDTVNVTE---EILEFFINNCPNLDDLRVGRS 200 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~c 200 (324)
..+..+++|++|+|.+..++. ..+..+.. ++|+.|.+.++
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n 184 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAAN 184 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCS
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCC
Confidence 346678888888888776543 34444321 55666666554
No 83
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.62 E-value=0.00012 Score=70.32 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=75.6
Q ss_pred cCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCCCCCCCCcEEEeeeEE-eCHH----HHHHH--HHcCCcccee
Q 020558 123 KRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVN-VTEE----ILEFF--INNCPNLDDL 195 (324)
Q Consensus 123 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~L~~L~L~~~~-~~~~----~l~~l--l~~cp~Le~L 195 (324)
.++++|++..+.-. -.+|..+..+++|++|+|.++. +++. .+..+ ...+++|++|
T Consensus 249 ~~L~~L~L~~n~l~------------------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 249 KDLTDVEVYNCPNL------------------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TTCCEEEEECCTTC------------------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred CCCCEEEecCCcCC------------------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 47888988654322 0234556789999999999987 7762 23332 1356899999
Q ss_pred EeecCCCcceEE--EecccCCccEEEEecCCCcceEE--EecCCccEEEEcceeeE---EeeCCCCC-ceEEEEec
Q 020558 196 RVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELE--ISCPSLLSFKYFGPEIK---LHVKNVPQ-LVDVLIGG 263 (324)
Q Consensus 196 ~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~L~~~~~~~~---~~~~~~~~-L~~l~l~~ 263 (324)
++.++.-..... .-..+++|++|+++++.--+.+. -..++|+.|.+.+.... -.+.++++ |+.+++..
T Consensus 311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred ECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 999885332111 12345788888888776221332 12367777777665432 12445666 77777765
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.62 E-value=3.4e-05 Score=73.62 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred cCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558 233 CPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE 306 (324)
Q Consensus 233 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~ 306 (324)
.|+|+.|.+.+... +-.+.++++|+.+++....... +......+++|+.|+|+.+.. ...|. ..+++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~l~~ 325 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFDR 325 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSCC---CCCGGGHHHHTT
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCCC---CccCcccccCCC
Confidence 47788888776643 1246788999999887622111 122235688999999998864 23444 67889
Q ss_pred ceeEEEEecc
Q 020558 307 LRHLMFMLVH 316 (324)
Q Consensus 307 L~~L~l~~~~ 316 (324)
|++|.|+.+.
T Consensus 326 L~~L~L~~N~ 335 (597)
T 3oja_B 326 LENLYLDHNS 335 (597)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCC
Confidence 9999987764
No 85
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.61 E-value=6.2e-07 Score=69.40 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=66.6
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFG 243 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~ 243 (324)
+++|++|++.++.++++.+...+..+++|++|++.+|.- +.+..-..+++|++|+++++. +...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~-i~~~-------------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSDNR-VSGG-------------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCCTTCCCCTTCCEEECCSSC-CCSC--------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCchhhhcCCCCCEEECCCCc-ccch--------------
Confidence 467888888877776434444456778888888877732 222222234666777766654 1110
Q ss_pred eeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC--C-CCCCcceeEEEE
Q 020558 244 PEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP--E-CDLPELRHLMFM 313 (324)
Q Consensus 244 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~-~~~~~L~~L~l~ 313 (324)
.+..+.++++|+.+++...... +......+..+++|+.|.++.+........+ . ..+++|++|+++
T Consensus 80 --~~~~~~~l~~L~~L~ls~N~i~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 --LEVLAEKCPNLTHLNLSGNKIK--DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --THHHHHHCTTCCEEECTTSCCC--SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --HHHHhhhCCCCCEEECCCCcCC--ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 0112233556666665541111 1001122456777777777766531111100 1 456677766553
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.61 E-value=5e-05 Score=72.71 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=61.3
Q ss_pred CCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEecccCCc
Q 020558 189 CPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIG 268 (324)
Q Consensus 189 cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 268 (324)
+++|+.|++.++.-. . +....++|+.|.+.++. +..+.-..++|+.|.+.+....-.-..+++|+.+++...
T Consensus 180 ~~~L~~L~Ls~N~l~-~--l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N---- 251 (622)
T 3g06_A 180 PSGLQELSVSDNQLA-S--LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN---- 251 (622)
T ss_dssp CTTCCEEECCSSCCS-C--CCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS----
T ss_pred CCCCcEEECCCCCCC-C--CCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC----
Confidence 355555555554211 1 11122455666555543 333332336666666665533211144566776666541
Q ss_pred ccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558 269 KGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 269 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 316 (324)
.+..+...+++|+.|.++.+.+ ..+|. ..+++|+.|+|+.+.
T Consensus 252 ---~L~~lp~~~~~L~~L~Ls~N~L---~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 ---RLTSLPMLPSGLLSLSVYRNQL---TRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ---CCSCCCCCCTTCCEEECCSSCC---CSCCGGGGGSCTTCEEECCSCC
T ss_pred ---CCCcCCcccccCcEEeCCCCCC---CcCCHHHhhccccCEEEecCCC
Confidence 1223344678888888887754 24455 677888888886653
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.61 E-value=1.2e-05 Score=68.74 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=8.9
Q ss_pred CCcceeEEEEecc
Q 020558 304 LPELRHLMFMLVH 316 (324)
Q Consensus 304 ~~~L~~L~l~~~~ 316 (324)
..+|++|+++.+.
T Consensus 199 ~~~L~~L~L~~n~ 211 (276)
T 2z62_A 199 EIRLKELALDTNQ 211 (276)
T ss_dssp SCCEEEEECCSSC
T ss_pred CCcccEEECCCCc
Confidence 3478888887553
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.60 E-value=0.00016 Score=67.63 Aligned_cols=152 Identities=10% Similarity=0.050 Sum_probs=89.6
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCCCcceE--EEe----cccC-------------------
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSDNLLRL--KVV----GSLL------------------- 213 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~----~~~~------------------- 213 (324)
+..+++|++|++.++.+++..+..+.. .+++|++|++.+|.-.+.+ .+. ..++
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 567889999999999998877666544 4679999999987411100 000 1223
Q ss_pred -------CccEEEEecCCCcceEE--EecCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccC
Q 020558 214 -------QLKCLHIDHCNNLEELE--ISCPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYF 280 (324)
Q Consensus 214 -------~L~~L~i~~c~~l~~l~--i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~ 280 (324)
+|+.|.++++. +..+. -..++|+.|.+.+... +-.+.++++|+.+++........+ .+...+..+
T Consensus 296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-HHHHHHTTC
T ss_pred hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-cchHHHhhC
Confidence 35555555444 22222 2446777777766532 123566777777777642111100 111234678
Q ss_pred CCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558 281 PQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH 316 (324)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 316 (324)
++|+.|+++.+.. . ...|. ..+++|++|+++.+.
T Consensus 374 ~~L~~L~Ls~N~l-~-~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 374 KSLQQLDISQNSV-S-YDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp TTCCEEECCSSCC-B-CCGGGCSCCCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcC-C-cccccchhccCccCCEEECcCCC
Confidence 8888888887764 1 11332 566888998887663
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.59 E-value=5.6e-05 Score=72.38 Aligned_cols=115 Identities=16% Similarity=0.028 Sum_probs=62.5
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF 242 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~ 242 (324)
.+++|++|+|+++.++. +. ...++|++|++.++.-.. +....++|+.|+++++. +..+....++|+.|.+.
T Consensus 79 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~l~~---l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPLTH---LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCCCCC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCcCCC---CCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECc
Confidence 35666666666665442 11 145666676666653211 11133567777766654 44444344677777766
Q ss_pred ceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 243 GPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 243 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
+....-.-...++|+.+++... .+..+...+++|+.|+++.+.+
T Consensus 150 ~N~l~~l~~~~~~L~~L~L~~N-------~l~~l~~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 150 DNQLASLPALPSELCKLWAYNN-------QLTSLPMLPSGLQELSVSDNQL 193 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSS-------CCSCCCCCCTTCCEEECCSSCC
T ss_pred CCcCCCcCCccCCCCEEECCCC-------CCCCCcccCCCCcEEECCCCCC
Confidence 6533211123456666666531 1223335678888888887764
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.58 E-value=8.7e-06 Score=77.77 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=99.3
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK 240 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~ 240 (324)
.+++|+.|.+.++.+.+ +.. +..+++|+.|+|.+|.-..... -..+++|+.|.+++|. +..+. + ..++|+.|.
T Consensus 41 ~L~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCC--CTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCC--ChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEE
Confidence 57889999998877653 222 6789999999999985222111 3456899999999876 44332 1 348999999
Q ss_pred EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC-CCCCCcceeEEEEec
Q 020558 241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP-ECDLPELRHLMFMLV 315 (324)
Q Consensus 241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~ 315 (324)
+.+.... -.+.++++|+.+++........ ..+..+++|+.|.|+.+.+ ...+ ...+++|++|.|+.+
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l---~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCC---CCCGGGTTCTTCCEEECCSS
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcC---CCchhhccCCCCCEEECcCC
Confidence 9877542 1467889999999986221111 3467899999999998864 2222 378899999999776
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.58 E-value=1.1e-05 Score=73.49 Aligned_cols=41 Identities=29% Similarity=0.592 Sum_probs=37.3
Q ss_pred ccccCCCCChH----HHHHHHhcCChhHHHHhhhcccchhh------cccc
Q 020558 13 LKDWVSRLPDD----ILVNIISRLTLKEAARTSVLSSRWKY------LWTY 53 (324)
Q Consensus 13 ~~d~~s~LPd~----vl~~Ils~L~~~d~~r~s~vsk~W~~------lw~~ 53 (324)
..|.++.||+| |+.+||+||+.++++++++|||+|++ +|+.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~ 57 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK 57 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 46899999999 99999999999999999999999984 5765
No 92
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.58 E-value=3.5e-05 Score=74.13 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=84.8
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEe--c-------ccCCccEEEEecCCCcceEE--E
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV--G-------SLLQLKCLHIDHCNNLEELE--I 231 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~-------~~~~L~~L~i~~c~~l~~l~--i 231 (324)
.+++|++|+|.+..++. .-..+...+++|++|++.++.-. .+... . .+++|+.|+++++. +..+. +
T Consensus 431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 507 (636)
T 4eco_A 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF 507 (636)
T ss_dssp CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG
T ss_pred cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhh
Confidence 34567777777666541 11233456777888888776422 11100 0 01278888887765 34332 1
Q ss_pred ---ecCCccEEEEcceee---EEeeCCCCCceEEEEeccc---CCcccceeccccccCCCceEEEEEeeecceecccCCC
Q 020558 232 ---SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGH---GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPEC 302 (324)
Q Consensus 232 ---~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 302 (324)
..++|+.|.+.+... +..+.++++|+.+++.... .+.....+..-+..+++|+.|+|+.+.+ ..+|..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l---~~ip~~ 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI---RKVNEK 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC---CBCCSC
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC---CccCHh
Confidence 447888888776533 2345677888888885311 1111111222345788888888887754 445554
Q ss_pred CCCcceeEEEEecc
Q 020558 303 DLPELRHLMFMLVH 316 (324)
Q Consensus 303 ~~~~L~~L~l~~~~ 316 (324)
.+++|++|+|+.++
T Consensus 585 ~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 ITPNISVLDIKDNP 598 (636)
T ss_dssp CCTTCCEEECCSCT
T ss_pred HhCcCCEEECcCCC
Confidence 44788888887663
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.57 E-value=4.5e-06 Score=72.87 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=78.6
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCCCcceE--EEe-cccCCccEEEEecCCCcce------EE-Ee
Q 020558 165 KSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSDNLLRL--KVV-GSLLQLKCLHIDHCNNLEE------LE-IS 232 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~-~~~~~L~~L~i~~c~~l~~------l~-i~ 232 (324)
..++.|.+.++.+++..+..+.. .+++|++|++.+|.-.... .+. ...++|++|+++++.--.. .. ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35678888888887776665533 4567888888877532211 110 3346677777766542110 00 13
Q ss_pred cCCccEEEEcceeeE----EeeCCCCCceEEEEeccc-C---------------------------CcccceeccccccC
Q 020558 233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGH-G---------------------------IGKGKVIGPIVNYF 280 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~-~---------------------------~~~~~~~~~l~~~~ 280 (324)
.++|+.|.+.+.... -.+.++++|+.+++.... . ...+.....++..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 456666666554321 134455666666655411 0 00000011123566
Q ss_pred CCceEEEEEeeecceecccCC--CC---CCcceeEEEEec
Q 020558 281 PQLKTLELHVELNEEILQFPE--CD---LPELRHLMFMLV 315 (324)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~~--~~---~~~L~~L~l~~~ 315 (324)
++|+.|+++.+.+. ...|. .. +++|++|.|+.+
T Consensus 224 ~~L~~L~Ls~N~l~--~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 224 VQPHSLDLSHNSLR--ATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp CCCSSEECTTSCCC--CCCCSCCSSCCCCTTCCCEECCSS
T ss_pred CCCCEEECCCCCCC--ccchhhHHhccCcCcCCEEECCCC
Confidence 78888888777641 11132 23 368888888655
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.54 E-value=3.9e-06 Score=77.27 Aligned_cols=159 Identities=12% Similarity=0.043 Sum_probs=105.0
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCC----ccceeEeecCCCcc----e-EEEecccCCccEEEEecCCCcceEE
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCP----NLDDLRVGRSDNLL----R-LKVVGSLLQLKCLHIDHCNNLEELE 230 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~L~l~~c~~~~----~-l~i~~~~~~L~~L~i~~c~~l~~l~ 230 (324)
.+..+++|++|+|++..+++..+..+...++ +|++|++.+|.-.. . ...-..+++|++|+++++. +....
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 129 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG 129 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH
Confidence 3456799999999999998888888888777 79999999995321 1 1112356899999999876 33211
Q ss_pred E---------ecCCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCc-cccee-ccccccCCCceEEEEEee
Q 020558 231 I---------SCPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIG-KGKVI-GPIVNYFPQLKTLELHVE 291 (324)
Q Consensus 231 i---------~~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~-~~~~~-~~l~~~~~~L~~L~l~~~ 291 (324)
. ..++|+.|.+.++... -.+..+++|+++++....... ....+ ..+....++|+.|.++.+
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 1 1357999999877432 124567999999998622111 01111 112235679999999988
Q ss_pred ecceec--ccCC--CCCCcceeEEEEecchhhh
Q 020558 292 LNEEIL--QFPE--CDLPELRHLMFMLVHLIVA 320 (324)
Q Consensus 292 ~~~~~~--~~~~--~~~~~L~~L~l~~~~~i~~ 320 (324)
...... .++. ..+++|++|.++.+ ++++
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~ 241 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSN-KLGD 241 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHH
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCC-cCCh
Confidence 652111 1232 57899999999877 3443
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.53 E-value=1.9e-05 Score=67.52 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCceEEEEEeeecceecccCC---CCCCcceeEEEEe
Q 020558 281 PQLKTLELHVELNEEILQFPE---CDLPELRHLMFML 314 (324)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~ 314 (324)
.+|+.|+++.+.. ...+. ..+++|++|+++.
T Consensus 200 ~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 200 IRLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEEECCSSCC---SCCCTTTTTTCCSCCEEECCS
T ss_pred CcccEEECCCCce---eecCHhHhcccccccEEEccC
Confidence 4799999987764 33333 6788999999874
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.53 E-value=6.8e-06 Score=65.44 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE----EecCCcc
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE----ISCPSLL 237 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~ 237 (324)
..+++|++|++.+..++. +..+...+|+|++|++.++. ++.+..-..+++|+.|+++++. +..+. -..|+|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 356788888888777652 33334445688888888874 2222222345677777777665 44332 1224555
Q ss_pred EEEEcce
Q 020558 238 SFKYFGP 244 (324)
Q Consensus 238 ~L~~~~~ 244 (324)
.|.+.+.
T Consensus 92 ~L~L~~N 98 (176)
T 1a9n_A 92 ELILTNN 98 (176)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 5555443
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.45 E-value=3.6e-05 Score=65.47 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-EecCCccEEEE
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-ISCPSLLSFKY 241 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i~~p~L~~L~~ 241 (324)
.+++|++|++.++.+++ +. -+..+++|++|++.++.-..... -..+++|++|+++++. +..+. +..++|+.|.+
T Consensus 39 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred hcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence 34555555555554432 11 13445556666655542111000 2233555555555543 22110 11155555555
Q ss_pred cceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 242 FGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 242 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
.+.... -.+.++++|+.+++........ ..+..+++|+.|.++.+.+... +. ..+++|++|.++..
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 544321 1244555555555553111100 1234555556555555543111 22 45555555555443
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.45 E-value=2.6e-05 Score=68.62 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=16.4
Q ss_pred ccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEe
Q 020558 278 NYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFML 314 (324)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~ 314 (324)
..+++|+.|+++.+.+ ..+|. ..+++|++|.++.
T Consensus 238 ~~l~~L~~L~L~~N~l---~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKL---SRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp GGCTTCCEEECCSSCC---CBCCTTGGGCTTCCEEECCS
T ss_pred hCCCCCCEEECCCCcC---eecChhhhcCccCCEEECCC
Confidence 3455555555555433 12333 4445555555543
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.43 E-value=3.5e-05 Score=74.60 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=23.7
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD 201 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 201 (324)
..+..+++|+.|+|.+..+++..-...+.++++|++|++.+|.
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 3455667777777776554321001123456677777776653
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=68.80 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCCCCCCCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeecCC
Q 020558 159 CGLSRVKSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGRSD 201 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~ 201 (324)
..+..+++|++|+|.++.+++ ..+...+..+++|++|++.++.
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 334455555555555555443 1233334455555555555543
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.37 E-value=7.8e-06 Score=73.00 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=82.5
Q ss_pred CCCcEEEeeeEEeCH---HHHHHHHHcC-CccceeEeecCCCcceEEE---e---cc-cCCccEEEEecCCCcceEEE--
Q 020558 165 KSLRFLYFDTVNVTE---EILEFFINNC-PNLDDLRVGRSDNLLRLKV---V---GS-LLQLKCLHIDHCNNLEELEI-- 231 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~l~~c~~~~~l~i---~---~~-~~~L~~L~i~~c~~l~~l~i-- 231 (324)
++|++|+|.++.+++ ..+...+..+ ++|++|++.+|.- +.... . .. +.+|++|++++|. +.....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence 677777777776553 3344555555 6777777777642 11111 0 01 2578888887765 331111
Q ss_pred ------ec-CCccEEEEcceeeE------E--eeCCC-CCceEEEEeccc-CCcccceecccccc-CCCceEEEEEeeec
Q 020558 232 ------SC-PSLLSFKYFGPEIK------L--HVKNV-PQLVDVLIGGGH-GIGKGKVIGPIVNY-FPQLKTLELHVELN 293 (324)
Q Consensus 232 ------~~-p~L~~L~~~~~~~~------~--~~~~~-~~L~~l~l~~~~-~~~~~~~~~~l~~~-~~~L~~L~l~~~~~ 293 (324)
.. ++|+.|.+.+.... + .+..+ ++|+.+++.... .......+.+.+.. .++|+.|+|+.+.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 12 37888887766321 0 13344 488888887622 11111112222233 46899999988765
Q ss_pred ceec--ccCC--CCCCcceeEEEEecc
Q 020558 294 EEIL--QFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 294 ~~~~--~~~~--~~~~~L~~L~l~~~~ 316 (324)
.... .+.. ..+++|++|.++.+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 2111 1112 677889999998774
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.35 E-value=7.1e-05 Score=60.58 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=37.0
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~ 224 (324)
+..+++|++|+|.++.+++..... +..+++|++|++.+|..++.+..-..+++|++|++++|.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred hcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 456677777777777666533333 456777777777776533333222344566666666554
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.34 E-value=0.00014 Score=72.23 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcce-EEEecccCCccEEEEecCCCcceEE----Eec
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLR-LKVVGSLLQLKCLHIDHCNNLEELE----ISC 233 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~i~~c~~l~~l~----i~~ 233 (324)
..+..+++|++|+|.+..++.-. ...+.++++|++|++.++.-... ...-..+++|+.|+++++. +..+. -..
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence 34566788888888877654311 11245678888888887742111 0111244678888887664 33332 124
Q ss_pred CCccEEEEcceeeEEeeCCCCCceEEEEeccc-CCc------------ccceec-----cccccCCCceEEEEEeeecce
Q 020558 234 PSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH-GIG------------KGKVIG-----PIVNYFPQLKTLELHVELNEE 295 (324)
Q Consensus 234 p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~------------~~~~~~-----~l~~~~~~L~~L~l~~~~~~~ 295 (324)
++|+.|.+.+.... .+..+++|+++.+.... ... ....+. ..+..+++|+.|+++.+....
T Consensus 362 ~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 362 EKLQTLDLRDNALT-TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp CCCCEEEEETCCSC-CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred CCCCEEECCCCCCC-cccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 77777777766432 23346677777766511 100 000011 123478999999999886521
Q ss_pred ecccCC-CCCCcceeEEEEecc
Q 020558 296 ILQFPE-CDLPELRHLMFMLVH 316 (324)
Q Consensus 296 ~~~~~~-~~~~~L~~L~l~~~~ 316 (324)
...... ..+++|++|.++.+.
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCC
T ss_pred cccccccccCCccccccCCCCc
Confidence 111111 457899999998764
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=9.4e-05 Score=73.48 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=89.6
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ec-------ccCCccEEEEecCCCcceEE--E--
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VG-------SLLQLKCLHIDHCNNLEELE--I-- 231 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~-------~~~~L~~L~i~~c~~l~~l~--i-- 231 (324)
++|++|+|.++.++. .-..+...+++|++|++.++.-. .+.. .. .+++|++|++++|. +..+. +
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~ 749 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA 749 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHHhhh
Confidence 367777777766551 11233457888888888876322 1110 00 11278889888875 44432 1
Q ss_pred -ecCCccEEEEcceee---EEeeCCCCCceEEEEeccc---CCcccceeccccccCCCceEEEEEeeecceecccCCCCC
Q 020558 232 -SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGH---GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDL 304 (324)
Q Consensus 232 -~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 304 (324)
..|+|+.|.+.+... +..+.++++|+.+++.... .+.....+..-+..+++|+.|.|+.+.+ ..+|...+
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L---~~Ip~~l~ 826 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI---RKVDEKLT 826 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC---CBCCSCCC
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC---CccCHhhc
Confidence 357888888877643 3356688889998886411 1111112223356789999999988753 45565445
Q ss_pred CcceeEEEEecc
Q 020558 305 PELRHLMFMLVH 316 (324)
Q Consensus 305 ~~L~~L~l~~~~ 316 (324)
++|++|+|+.++
T Consensus 827 ~~L~~LdLs~N~ 838 (876)
T 4ecn_A 827 PQLYILDIADNP 838 (876)
T ss_dssp SSSCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 799999997774
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.34 E-value=6.8e-05 Score=72.52 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=23.0
Q ss_pred cccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558 277 VNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV 315 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~ 315 (324)
+..+++|+.|+++.+.+ ...+. ..+++|++|+++.+
T Consensus 476 ~~~l~~L~~L~Ls~N~l---~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNI---ANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp TTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCCCC---CcCChhhhccccccCEEeCCCC
Confidence 45677777777776653 22222 56677888888665
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.32 E-value=0.00029 Score=64.90 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=13.0
Q ss_pred CCccEEEEecCCCcceEEEecCCccEEEEcce
Q 020558 213 LQLKCLHIDHCNNLEELEISCPSLLSFKYFGP 244 (324)
Q Consensus 213 ~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~ 244 (324)
++|++|+++++. +..+.-..++|+.|.+.+.
T Consensus 277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp TTCCEEECCSSC-CSEESCCCTTCCEEECCSS
T ss_pred CcCCEEECcCCc-cCcccCcCCcCCEEECcCC
Confidence 445555555443 2222111245555554443
No 107
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.31 E-value=1.6e-06 Score=77.94 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=22.3
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS 200 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 200 (324)
++|++|+|+++.+++.++..+...+++|++|+|.+|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 466666666666666655555555556666666665
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.27 E-value=0.00014 Score=64.82 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=93.1
Q ss_pred CCCcEEEeeeEEeCH----HHHHHH---HHcCCccceeEeecCCC----c---c--eE-EEecccCCccEEEEecCCCcc
Q 020558 165 KSLRFLYFDTVNVTE----EILEFF---INNCPNLDDLRVGRSDN----L---L--RL-KVVGSLLQLKCLHIDHCNNLE 227 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~----~~l~~l---l~~cp~Le~L~l~~c~~----~---~--~l-~i~~~~~~L~~L~i~~c~~l~ 227 (324)
+.++.|.+....+.+ ..+..| +...|+|+.|.+.+... + . .+ .+...+|.|++|.+.++..+.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 467777777554431 245555 34679999999965321 1 0 11 122456899999998874322
Q ss_pred eEEEecCCccEEEEcceeeE------EeeCCCCCceEEEEecc---cCCcc-cceecccc--ccCCCceEEEEEeeecce
Q 020558 228 ELEISCPSLLSFKYFGPEIK------LHVKNVPQLVDVLIGGG---HGIGK-GKVIGPIV--NYFPQLKTLELHVELNEE 295 (324)
Q Consensus 228 ~l~i~~p~L~~L~~~~~~~~------~~~~~~~~L~~l~l~~~---~~~~~-~~~~~~l~--~~~~~L~~L~l~~~~~~~ 295 (324)
--.+..|+|++|.+..+... +....+|+|+.+.+... +.... -..+..++ ..+|+|+.|.|+.+.+..
T Consensus 187 l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 11234799999999765432 12247899999998641 11111 11122333 358999999998776411
Q ss_pred --ecccCC-CCCCcceeEEEEecchhhh
Q 020558 296 --ILQFPE-CDLPELRHLMFMLVHLIVA 320 (324)
Q Consensus 296 --~~~~~~-~~~~~L~~L~l~~~~~i~~ 320 (324)
...... +.+++|++|.|+.+ .|++
T Consensus 267 ~~~~~la~a~~~~~L~~LdLs~n-~L~d 293 (362)
T 2ra8_A 267 VVVEMFLESDILPQLETMDISAG-VLTD 293 (362)
T ss_dssp HHHHHHHHCSSGGGCSEEECCSS-CCBH
T ss_pred HHHHHHHhCccCCCCCEEECCCC-CCCh
Confidence 111111 67899999999654 5555
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.27 E-value=0.00012 Score=69.89 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=83.1
Q ss_pred cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEEE--
Q 020558 156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELEI-- 231 (324)
Q Consensus 156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~i-- 231 (324)
++|..+. +++++|+|++..++.=. ..-++++++|++|+|.+|. ++.+.- -..+++|++|+++++. +..+..
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~ 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHH
Confidence 4555432 47899999887654200 0114678999999999884 222211 1245789999998875 666543
Q ss_pred --ecCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 232 --SCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 232 --~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
..++|+.|.+.+.... ..++++++|+.+++...... .......+..+++|+.|.++.+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC--CCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc--cCCCchhhccchhhhhhcccCccc
Confidence 2378888888776432 24778889999888752211 111223456788999999887765
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.25 E-value=8e-05 Score=58.49 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=67.2
Q ss_pred cCCccceeEeecCCCc-ceE-EEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEeccc
Q 020558 188 NCPNLDDLRVGRSDNL-LRL-KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH 265 (324)
Q Consensus 188 ~cp~Le~L~l~~c~~~-~~l-~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~ 265 (324)
..+.|++|++.+|.-. ..+ ..-..+++|+.|++.+|. +..+ -.+..+++|+.+++....
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCc
Confidence 4478899999887522 121 111344677777777664 2221 135678899999988622
Q ss_pred CCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEecc
Q 020558 266 GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLVH 316 (324)
Q Consensus 266 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 316 (324)
... .+..+...+++|+.|.++.+.+..+..... ..+++|++|.++.+.
T Consensus 83 l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 83 IFG---GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CCS---CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred Cch---HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 111 123445579999999999886522222233 788999999997763
No 111
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.25 E-value=4.4e-05 Score=67.16 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=21.2
Q ss_pred CCceEEEEEeeecceecccC-C--CCCCcceeEEEEec
Q 020558 281 PQLKTLELHVELNEEILQFP-E--CDLPELRHLMFMLV 315 (324)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~-~--~~~~~L~~L~l~~~ 315 (324)
++|+.|.++.+.. ...+ . ..+++|++|.++.+
T Consensus 193 ~~L~~L~l~~n~i---~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 193 ETLNELHLDHNKI---QAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp SSCSCCBCCSSCC---CCCCTTSSTTCTTCSCCBCCSS
T ss_pred CCCCEEECCCCcC---CccCHHHhcCCCCCCEEECCCC
Confidence 5777777776654 2222 2 67788888888755
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.24 E-value=1.7e-05 Score=70.74 Aligned_cols=150 Identities=11% Similarity=0.062 Sum_probs=95.5
Q ss_pred CCCcEEEeeeEEeCHHH---HHHHHHc-CCccceeEeecCCCcc----eE--EEecccCCccEEEEecCCCcceEEE---
Q 020558 165 KSLRFLYFDTVNVTEEI---LEFFINN-CPNLDDLRVGRSDNLL----RL--KVVGSLLQLKCLHIDHCNNLEELEI--- 231 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~---l~~ll~~-cp~Le~L~l~~c~~~~----~l--~i~~~~~~L~~L~i~~c~~l~~l~i--- 231 (324)
++|++|+|.++.+++.. +...+.. +++|++|++.+|.-.. .+ .+....++|++|++++|. +.....
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l 187 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAEL 187 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHH
Confidence 79999999999977644 4444555 6799999999984221 11 011111499999999986 433221
Q ss_pred -----ec-CCccEEEEcceeeEE--------eeCC-CCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeecce
Q 020558 232 -----SC-PSLLSFKYFGPEIKL--------HVKN-VPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEE 295 (324)
Q Consensus 232 -----~~-p~L~~L~~~~~~~~~--------~~~~-~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 295 (324)
.. ++|+.|.+.+....- .+.. .++|+.+++.... .......+..+...+++|+.|.++.+....
T Consensus 188 ~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 22 599999998764210 1222 4699999998732 222223344667889999999999887321
Q ss_pred e-----cccCC--CCCCcceeEEEEec
Q 020558 296 I-----LQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 296 ~-----~~~~~--~~~~~L~~L~l~~~ 315 (324)
+ ..++. +.+++|+.|+++..
T Consensus 268 i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 268 MSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred cCHHHHHHHHHHhccCCceEEEecCCC
Confidence 1 11122 56677777777544
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.24 E-value=4.9e-05 Score=64.06 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=84.6
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecC
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCP 234 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p 234 (324)
.+..+++|++|+|.+..+++- ....+..+++|++|++.++.-.... ..-..+++|++|+++++. +..+.- ..+
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 131 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence 356789999999988776541 1122467889999999887422110 111345789999998765 444432 247
Q ss_pred CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
+|+.|.+.+.... -.+.++++|+.+++....... .....+..+++|+.|.++.+.+
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS---VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSCCB
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc---cCHHHHhCCCCCCEEEeeCCce
Confidence 8999988876432 136678999999988622111 1113356789999999988775
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.19 E-value=0.00019 Score=67.89 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=51.6
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE-----ecC
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI-----SCP 234 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i-----~~p 234 (324)
.+..+++|++|+|++..+++-. ...+.++++|++|++.++.- +.+.-. .+++|++|+++++. +..+.+ ..+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRL-QNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLT 146 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCC-CEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCT
T ss_pred hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcC-CccCcc-ccccCCEEECCCCC-ccccCchHhhcccC
Confidence 3556777777777766654210 11144567777777776642 222111 44677777776655 333221 236
Q ss_pred CccEEEEcceeeE-EeeCCCCCc--eEEEEec
Q 020558 235 SLLSFKYFGPEIK-LHVKNVPQL--VDVLIGG 263 (324)
Q Consensus 235 ~L~~L~~~~~~~~-~~~~~~~~L--~~l~l~~ 263 (324)
+|+.|.+.+.... ..+.++++| +.+++..
T Consensus 147 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred cccEEecCCCccccCchhhhhhceeeEEEeec
Confidence 6666666654321 123333444 5555554
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00074 Score=59.16 Aligned_cols=32 Identities=3% Similarity=0.137 Sum_probs=15.3
Q ss_pred ccEEEEEEeCCCCCcchHHHHHHHHHhcCceEEEEEc
Q 020558 96 VNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNL 132 (324)
Q Consensus 96 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~l~~L~l~~ 132 (324)
++.+.+.+.... ..+ +++... ..+++.|+++.
T Consensus 27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~ 58 (329)
T 3sb4_A 27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISN 58 (329)
T ss_dssp CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEE
T ss_pred eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCc
Confidence 667777654321 111 122211 34677777753
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.18 E-value=9e-05 Score=60.41 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLL 237 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 237 (324)
.++|++|+|.+..++.- ....+.++++|++|++.++.- +.+. .-..+++|++|+++++. +..+.- ..++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 56788888888776521 122346788888888888632 2211 11245778888887764 333321 235666
Q ss_pred EEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeee
Q 020558 238 SFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVEL 292 (324)
Q Consensus 238 ~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 292 (324)
.|.+.+.... -.+.++++|+.+++...... ......+..+++|+.|+++.+.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccc---eeCHHHhccCCCccEEEecCCC
Confidence 6666554321 12455667777766642111 0111224456777777776554
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.16 E-value=0.00021 Score=56.62 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=83.0
Q ss_pred cCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEEcceeeE-E---eeCCCCCceEEEE
Q 020558 188 NCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYFGPEIK-L---HVKNVPQLVDVLI 261 (324)
Q Consensus 188 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l 261 (324)
.+++|++|.+.++.-...-.+....++|++|+++++. +..+. + ..++|+.|.+.+.... + .+.++++|+.+++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 6889999999998432211222333599999999886 55552 1 3479999999877542 2 2467899999999
Q ss_pred ecccCCcccceeccccccCCCceEEEEEeeecceecccCC------CCCCcceeEEEEecc
Q 020558 262 GGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE------CDLPELRHLMFMLVH 316 (324)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~ 316 (324)
........+. ...+..+++|+.|.++.+... ..|. ..+++|+.|.++.+.
T Consensus 96 ~~N~i~~~~~--~~~l~~l~~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSLVELGD--LDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCCCCGGG--GGGGGGCTTCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcCCcchh--hHhhhcCCCCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCcCC
Confidence 8622211111 123568999999999988752 2222 578899999887764
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.06 E-value=0.00012 Score=60.36 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=62.7
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLL 237 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 237 (324)
.+.+++|+|.+..++.-.-...+..+++|++|++.++.- +.+. .-..+++|++|+++++. +..+.- ..++|+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLK 108 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCC
Confidence 345678887776654321112245678888888877642 2211 11234677777776654 232221 235556
Q ss_pred EEEEcceeeE----EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeec
Q 020558 238 SFKYFGPEIK----LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 238 ~L~~~~~~~~----~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
.|.+.+.... -.+.++++|+.+++... ...... ..+..+++|+.|.++.+.+
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----GAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT----TTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH----HHhcCCCCCCEEEecCcCC
Confidence 6655554321 13445666666666541 111111 2234566666666665554
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.05 E-value=0.00045 Score=63.55 Aligned_cols=135 Identities=18% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEEc
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYF 242 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~ 242 (324)
++|++|++.+..+++ +.. +.++++|++|++.++.-. . +.....+|++|+++++. +..+. + ..++|+.|.+.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~-~--lp~~~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLK-K--LPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-C--CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCc-c--cCCCcccccEEECcCCc-CCcCccccCCCCCCEEECC
Confidence 456666666555442 222 455666666666665321 1 12222466666666554 22221 1 23566666655
Q ss_pred ceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558 243 GPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLV 315 (324)
Q Consensus 243 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (324)
+....-.-...++|+.+++......... . +..+++|+.|+++.+.. ...| ..+++|++|.++.+
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp----~-~~~l~~L~~L~l~~N~l---~~l~-~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELP----E-LQNLPFLTTIYADNNLL---KTLP-DLPPSLEALNVRDN 267 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCC----C-CTTCTTCCEEECCSSCC---SSCC-SCCTTCCEEECCSS
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCccc----c-cCCCCCCCEEECCCCcC---Cccc-ccccccCEEECCCC
Confidence 5432110112245666666542111111 1 34677888888876644 2222 22355666655443
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.04 E-value=0.0022 Score=60.45 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=30.0
Q ss_pred CCCCCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCC
Q 020558 162 SRVKSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSD 201 (324)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~ 201 (324)
..+++|+.|.|.++.+++..+..+.. ..+.|++|++.+|.
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 45678888888888888877665543 45689999998874
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.04 E-value=0.001 Score=62.90 Aligned_cols=139 Identities=13% Similarity=0.018 Sum_probs=78.8
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF 242 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~ 242 (324)
.+++|++|+|.+..++. +.. + +.+|++|++.++.-.. +...+++|+.|+++++. +..+.-..++|+.|.+.
T Consensus 98 ~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST--LPE-L--PASLKHLDVDNNQLTM---LPELPALLEYINADNNQ-LTMLPELPTSLEVLSVR 168 (571)
T ss_dssp CCTTCCEEECCSSCCSC--CCC-C--CTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred ccCCCCEEEccCCCCCC--cch-h--hcCCCEEECCCCcCCC---CCCcCccccEEeCCCCc-cCcCCCcCCCcCEEECC
Confidence 46778888877776543 222 2 2278888887764221 11145778888887765 44443345788888877
Q ss_pred ceeeE-E-eeCCCCCceEEEEecccCCcccceec-cccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558 243 GPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIG-PIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 243 ~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 316 (324)
+.... + .+. ++|+.+++........+. +. .+....+.|+.|.|+.+.+ ..+|. ..+++|++|+|+.+.
T Consensus 169 ~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l---~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 169 NNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRI---THIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCC---CCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcc---eecCHHHhcCCCCCEEEeeCCc
Confidence 66421 1 022 778888877522111111 11 1112223338898887754 34565 558899999997664
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.95 E-value=0.00013 Score=64.94 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=80.0
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHH-cCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFIN-NCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSL 236 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 236 (324)
.+.++.|+|++..++.-.- ..+. ++++|++|+|.++.- +.+. .-..+++|++|+++++. +..+.- ..++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp CTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 3457888888776543111 1123 678888888887632 2211 11244778888887765 454432 23778
Q ss_pred cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCc--c
Q 020558 237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPE--L 307 (324)
Q Consensus 237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~--L 307 (324)
+.|.+.+.... ..+.++++|+.+++...........+..-+..+++|+.|+|+.+.+ ...+. ..+++ |
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC---CCCCHHHHHHSCHHHH
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC---CccCHHHhhhccHhhc
Confidence 88887766432 2366788888888876221111111101114678889988887754 23332 33443 3
Q ss_pred eeEEEEe
Q 020558 308 RHLMFML 314 (324)
Q Consensus 308 ~~L~l~~ 314 (324)
+.|.|..
T Consensus 192 ~~l~l~~ 198 (361)
T 2xot_A 192 NGLYLHN 198 (361)
T ss_dssp TTEECCS
T ss_pred ceEEecC
Confidence 6666644
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.94 E-value=2.2e-05 Score=70.44 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=40.9
Q ss_pred CCCCCcEEEeeeEEeCHHHHHHH---H-HcCCccceeEeecCCCcc-e-EEE---ecccCCccEEEEecCC
Q 020558 163 RVKSLRFLYFDTVNVTEEILEFF---I-NNCPNLDDLRVGRSDNLL-R-LKV---VGSLLQLKCLHIDHCN 224 (324)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~l---l-~~cp~Le~L~l~~c~~~~-~-l~i---~~~~~~L~~L~i~~c~ 224 (324)
.+++|++|+|.++.+++.+...+ + ..++.|++|+|.+|.-.. . ..+ -..+++|++|+++++.
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 35688999999988888765544 3 357889999999885211 0 001 0234678888887765
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.91 E-value=5.2e-05 Score=58.32 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=66.2
Q ss_pred cCCccceeEeecCCCc-ceE-EEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEeccc
Q 020558 188 NCPNLDDLRVGRSDNL-LRL-KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH 265 (324)
Q Consensus 188 ~cp~Le~L~l~~c~~~-~~l-~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~ 265 (324)
..++|++|++.+|.-. ..+ ..-..+++|+.|++++|. +..+ -.+.++++|+.+++....
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCc
Confidence 3477999999988532 121 122345677777777664 2221 135678889988887622
Q ss_pred CCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558 266 GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV 315 (324)
Q Consensus 266 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 315 (324)
... .+......+++|+.|.++.+.......... ..+++|++|.++.+
T Consensus 76 i~~---~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 76 VSG---GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCS---CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred ccc---hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 111 122344579999999999887522222123 78899999999776
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.85 E-value=0.00025 Score=58.89 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=63.9
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLL 237 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 237 (324)
.++|++|+|.+..++.- ....+.++++|++|++.++.- +.+. .-..+++|+.|+++++. +..+.- ..++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhC
Confidence 37888888888776531 112245678888888887642 2211 11244677888877664 333321 235566
Q ss_pred EEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeee
Q 020558 238 SFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVEL 292 (324)
Q Consensus 238 ~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 292 (324)
.|.+.+.... -.+.++++|+.+++....... .....+..+++|+.|.+..+.
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS---IPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECTTSC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCCCcCCc---cCHHHHhCCCCCCEEEeeCCC
Confidence 6655544321 123455566665555411110 011223455666666665544
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.80 E-value=0.00022 Score=58.84 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=60.3
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS 238 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 238 (324)
++|++|+|.+..++.-. ...+..+++|++|++.++.-. .+ ..-..+++|++|+++++. +..+.- ..++|+.
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence 57778877776654210 012455677788877776421 11 111234667777776654 333221 2355555
Q ss_pred EEEcceeeE----EeeCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeec
Q 020558 239 FKYFGPEIK----LHVKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 239 L~~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
|.+.+.... -.+.++++|+.+++.... .... ...+..+++|+.|.++.+.+
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA----KGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC----HHHHhCCCCCCEEEeCCCCc
Confidence 555544321 124455666666665411 1111 12234556666666655543
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.79 E-value=0.00062 Score=64.43 Aligned_cols=113 Identities=15% Similarity=0.000 Sum_probs=65.5
Q ss_pred CCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEccee
Q 020558 166 SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPE 245 (324)
Q Consensus 166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~ 245 (324)
+|++|+|.+..++. +.. .+++|+.|++.++.-.. +....++|++|+++++. +..+.--.++|+.|.+.+..
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM---LPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc---CCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC
Confidence 78888888877654 222 57888888888774221 22244788888888775 33322122788888887764
Q ss_pred eE-Ee-eCCCCCc-------eEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 246 IK-LH-VKNVPQL-------VDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 246 ~~-~~-~~~~~~L-------~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
.. +. +.+ +| +.+++........+. . +..+++|+.|.|+.+.+
T Consensus 192 L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~---~-l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 192 LESLPAVPV--RNHHSEETEIFFRCRENRITHIPE---N-ILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CSSCCCCC----------CCEEEECCSSCCCCCCG---G-GGGSCTTEEEECCSSSC
T ss_pred CCchhhHHH--hhhcccccceEEecCCCcceecCH---H-HhcCCCCCEEEeeCCcC
Confidence 32 10 111 45 777666522111111 1 22478888888887765
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.78 E-value=0.003 Score=55.82 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=17.2
Q ss_pred cccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558 277 VNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF 312 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (324)
+..+++|+.|+++.+.+ ..+|...|.+|++|.+
T Consensus 198 f~~l~~L~~LdLs~N~l---~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 198 FHGASGPVILDISRTRI---HSLPSYGLENLKKLRA 230 (350)
T ss_dssp TTTEECCSEEECTTSCC---CCCCSSSCTTCCEEEC
T ss_pred hccCcccchhhcCCCCc---CccChhhhccchHhhh
Confidence 45667777777766543 2333333444444443
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.73 E-value=0.0015 Score=53.69 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=79.7
Q ss_pred CccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE----EeeCCCCCceEE
Q 020558 190 PNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK----LHVKNVPQLVDV 259 (324)
Q Consensus 190 p~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l 259 (324)
+.|++|++.+..- +.+. .-..+++|+.|+++++. +..+.- ..++|+.|.+.+.... -.+.++++|+.+
T Consensus 32 ~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 6899999998742 2221 11345799999999876 555421 3389999999877542 135678999999
Q ss_pred EEeccc-CCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558 260 LIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH 316 (324)
Q Consensus 260 ~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 316 (324)
++.... .... ...+..+++|+.|.|+.+.+ ...+. ..+++|++|.|+..+
T Consensus 110 ~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 110 LLNANKINCLR----VDAFQDLHNLNLLSLYDNKL---QTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSCCCCCC----TTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCEeC----HHHcCCCCCCCEEECCCCcC---CEECHHHHhCCCCCCEEEeCCCC
Confidence 998622 2211 13356889999999998865 22222 678899999986553
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.72 E-value=6e-06 Score=67.08 Aligned_cols=62 Identities=23% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558 160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~ 224 (324)
.+..+++|++|+|.+..+++ +. -+..+++|++|++.++.-...-.....+++|++|+++++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 34568899999999988765 33 3667889999999887311100111223567777777653
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.59 E-value=0.0012 Score=54.57 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=81.6
Q ss_pred CCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE----EeeCCCCCceEE
Q 020558 189 CPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK----LHVKNVPQLVDV 259 (324)
Q Consensus 189 cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l 259 (324)
.++|++|++.++.-.... ..-..+++|++|+++++. +..+.. ..++|+.|.+.+.... ..+..+++|+.+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 389999999997532210 111345899999999876 555532 3489999999887542 135688999999
Q ss_pred EEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558 260 LIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH 316 (324)
Q Consensus 260 ~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 316 (324)
++......... .-+..+++|+.|.++.+.+ ...+. ..+++|++|.+...+
T Consensus 118 ~Ls~N~l~~lp----~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLTELP----RGIERLTHLTHLALDQNQL---KSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCCSCC----TTGGGCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCcccccC----cccccCCCCCEEECCCCcC---CccCHHHHhCCCCCCEEEeeCCC
Confidence 99862222111 2236889999999998864 33332 678899999986543
No 132
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.32 E-value=0.001 Score=63.28 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPS 235 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~ 235 (324)
+..+++|+.+.+.........-.....++++|+.+++.++.-.... ......+.|+.|.++++.....+. -..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 3445556666555443211111111334555666655554211100 111234678888887665333222 12378
Q ss_pred ccEEEEcceeeE----EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCC--CCC-Ccc
Q 020558 236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDL-PEL 307 (324)
Q Consensus 236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~-~~L 307 (324)
|+.|.+.+.... -.+.++++|+.+++... ..... ...+..+++|+.|+|+.+.+ . ...|. ..+ .+|
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~l-~-~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHI-M-TSKKQELQHFPSSL 569 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC----CGGGTTCTTCCEEECTTSCC-C-BCCSSCTTCCCTTC
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC----hhHHhCCCCCCEEECCCCcC-C-CCCHHHHHhhhCcC
Confidence 888888876432 23677888998888752 11111 12346788999999987764 1 12222 334 588
Q ss_pred eeEEEEe
Q 020558 308 RHLMFML 314 (324)
Q Consensus 308 ~~L~l~~ 314 (324)
++|.|+.
T Consensus 570 ~~L~L~~ 576 (635)
T 4g8a_A 570 AFLNLTQ 576 (635)
T ss_dssp CEEECTT
T ss_pred CEEEeeC
Confidence 9988854
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.25 E-value=0.0038 Score=55.09 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=39.8
Q ss_pred CCCcEEEeeeEEeCHHHHH-HHHHcCCccceeEeecCCCcceEEEe--cccCCccEEEEecCCCcceEE----EecCCcc
Q 020558 165 KSLRFLYFDTVNVTEEILE-FFINNCPNLDDLRVGRSDNLLRLKVV--GSLLQLKCLHIDHCNNLEELE----ISCPSLL 237 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~i~~c~~l~~l~----i~~p~L~ 237 (324)
+++++|+|.+..++. +. ..++++++|++|+|.++.-.+.+... ..++++.++.+..+.++..+. -..++|+
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 567777777665431 11 11345677777777776543332111 123455555555454454442 1236666
Q ss_pred EEEEcce
Q 020558 238 SFKYFGP 244 (324)
Q Consensus 238 ~L~~~~~ 244 (324)
.|.+.+.
T Consensus 108 ~L~l~~n 114 (350)
T 4ay9_X 108 YLLISNT 114 (350)
T ss_dssp EEEEEEE
T ss_pred ccccccc
Confidence 6666554
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.19 E-value=0.001 Score=53.96 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecCC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCPS 235 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~ 235 (324)
+..+++|++|+|.+..++.- ....+..+++|++|++.++.-.... ..-..+++|++|+++++. +..+.- ..++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence 46789999999998776521 1223567899999999987422111 111345799999998765 444322 3489
Q ss_pred ccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
|+.|.+.+.... ..+.++++|+.+++... .+...+++|+.|.+..+..
T Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N----------~~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN----------PWDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC----------CBCCCTTTTHHHHHHHHHC
T ss_pred CCEEECCCCccceeCHHHhccCCCccEEEecCC----------CeecCCCCHHHHHHHHHhC
Confidence 999998876432 13567899999988742 1123677888877765543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.17 E-value=0.0077 Score=54.35 Aligned_cols=36 Identities=6% Similarity=-0.011 Sum_probs=18.6
Q ss_pred cccCCCceEEEEEeeecceecccCCCCCCcceeEEEEe
Q 020558 277 VNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFML 314 (324)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 314 (324)
+.+|++|+.+.|...-. .+..-....+ +|+.|.+..
T Consensus 319 F~~c~~L~~l~lp~~l~-~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 319 LGGNRKVTQLTIPANVT-QINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTCCSCCEEEECTTCC-EECTTSSSSS-CCCEEEECC
T ss_pred hcCCCCccEEEECcccc-EEcHHhCCCC-CCCEEEEcC
Confidence 34667777777743321 2222111344 777777754
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.98 E-value=0.0007 Score=64.10 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=88.8
Q ss_pred CCCCCCCcEEE-eeeEE--------eCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-
Q 020558 161 LSRVKSLRFLY-FDTVN--------VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE- 230 (324)
Q Consensus 161 ~~~~~~L~~L~-L~~~~--------~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~- 230 (324)
+..+++|+.|+ +.... +.++.+..+- ...|+.|++.++.-...-. -..+++|+.|+++++. +..+.
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~ 480 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPP 480 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCG
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccch
Confidence 34577788877 33221 2223343332 2368999999874222112 3456799999999875 44331
Q ss_pred --EecCCccEEEEcceee---EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC-C--C
Q 020558 231 --ISCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP-E--C 302 (324)
Q Consensus 231 --i~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~--~ 302 (324)
-..++|+.|.+.+... + .++++++|+.+++........ .....+..+++|+.|.|+.+.+....... . .
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS--STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC--CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 1448999999887643 3 578899999999986221111 00133568999999999988752221111 1 4
Q ss_pred CCCcceeEEE
Q 020558 303 DLPELRHLMF 312 (324)
Q Consensus 303 ~~~~L~~L~l 312 (324)
.+++|+.|.+
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 5889998853
No 137
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.81 E-value=0.00036 Score=55.89 Aligned_cols=118 Identities=12% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCCCCcEEEeeeE-EeCHHHHHHH---HHcCCccceeEeecCCCcc----eE-EEecccCCccEEEEecCCCcceEEEe
Q 020558 162 SRVKSLRFLYFDTV-NVTEEILEFF---INNCPNLDDLRVGRSDNLL----RL-KVVGSLLQLKCLHIDHCNNLEELEIS 232 (324)
Q Consensus 162 ~~~~~L~~L~L~~~-~~~~~~l~~l---l~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~i~~c~~l~~l~i~ 232 (324)
...+.|++|+|.++ .+++++...+ +..++.|++|+|.+|.--. .+ ..-...++|++|+++++. +..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~---- 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG---- 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH----
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH----
Confidence 45788999999998 8888765544 5578889999998875211 00 001123567777776654 111
Q ss_pred cCCccEEEEccee-eEEeeCCCCCceEEEE--ec-ccCCcccceeccccccCCCceEEEEEeeec
Q 020558 233 CPSLLSFKYFGPE-IKLHVKNVPQLVDVLI--GG-GHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 233 ~p~L~~L~~~~~~-~~~~~~~~~~L~~l~l--~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
.|.. ..-.+...+.|+++++ .. .....-...+.+.+...+.|+.|+|+.+.+
T Consensus 108 ---------~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 ---------SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp ---------HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ---------HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 0000 0012334556666666 32 111111122445555667777777766554
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.74 E-value=0.009 Score=52.92 Aligned_cols=119 Identities=22% Similarity=0.233 Sum_probs=79.7
Q ss_pred CCccceeEeecCCCcceEEEe--c-ccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE-E---eeCCCCCce
Q 020558 189 CPNLDDLRVGRSDNLLRLKVV--G-SLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK-L---HVKNVPQLV 257 (324)
Q Consensus 189 cp~Le~L~l~~c~~~~~l~i~--~-~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~-~---~~~~~~~L~ 257 (324)
.+.++.|+|.+.. ++.+... . .+++|+.|+++++. +..+.- ..++|+.|.+.+.... + .+.++++|+
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 3568999999874 2322111 1 56899999999875 555542 3489999999887542 2 367889999
Q ss_pred EEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC------CCCCcceeEEEEec
Q 020558 258 DVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE------CDLPELRHLMFMLV 315 (324)
Q Consensus 258 ~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~ 315 (324)
.+++...... ......+..+++|+.|.|+.+.+ ..+|. ..+++|++|.|+..
T Consensus 116 ~L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 116 VLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI---SRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp EEECCSSCCC---EECTTTTTTCTTCCEEECCSSCC---CSCCGGGTC----CTTCCEEECCSS
T ss_pred EEECCCCccc---EECHHHhCCcccCCEEECCCCcC---CeeCHHHhcCcccCCcCCEEECCCC
Confidence 9999862211 11123356889999999998865 33333 35789999999765
No 139
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.69 E-value=0.0036 Score=51.36 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=69.2
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCC
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPS 235 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~ 235 (324)
+..+++|++|+|.+..++.-. ...+.++++|++|++.++.-.... ..-..+++|++|+++++. +..+. ...++
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCcc
Confidence 567899999999987765311 112567899999999987432211 112345899999998775 33331 13489
Q ss_pred ccEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558 236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGG 263 (324)
Q Consensus 236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~ 263 (324)
|+.|.+.+.... -.+.++++|+.+++..
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 999999877432 2467899999999987
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.46 E-value=9.8e-05 Score=59.79 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEE
Q 020558 161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFK 240 (324)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~ 240 (324)
+..+++|++|++.++.++. +...+..+|+|++|++.++.- +.+.--..+++|++|+++++. +..+.
T Consensus 66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~l~~N~-i~~~~---------- 131 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNK-ITNWG---------- 131 (198)
T ss_dssp HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC-CCHHHHHHHHHSSEEEESEEE-CCCHH----------
T ss_pred cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC-CcCCccccCCCCCEEECCCCc-CCchh----------
Confidence 4578999999999999873 445566679999999998732 111111233566666665543 11100
Q ss_pred EcceeeEEeeCCCCCceEEEEecc-cCCcc------cceeccccccCCCceEEE
Q 020558 241 YFGPEIKLHVKNVPQLVDVLIGGG-HGIGK------GKVIGPIVNYFPQLKTLE 287 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~------~~~~~~l~~~~~~L~~L~ 287 (324)
..-.+.++++|+.+++... ..... ......++..+++|+.|+
T Consensus 132 -----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 132 -----EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -----HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -----HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 0013566778888887751 11100 111224466888888875
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.41 E-value=0.0033 Score=50.38 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=36.0
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~ 224 (324)
+++|++|+|.+..++.-.-...+...++|++|++.++.-.... ..-...++|++|++++..
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 3488888888877653211123567788888888877422110 111234677777777654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.35 E-value=0.005 Score=49.40 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=37.2
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~ 224 (324)
+++|++|+|.+..++. +..-+.++++|++|++.++.-.... ..-..+++|++|++++..
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4689999998887652 2233677889999999887422110 001234677777776654
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.07 E-value=0.017 Score=46.18 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=17.0
Q ss_pred CccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558 190 PNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 190 p~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~ 224 (324)
++|++|++.+..-...-..-..+++|+.|+++++.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~ 65 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR 65 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc
Confidence 46777777765321100111233566666666543
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.01 E-value=0.012 Score=55.69 Aligned_cols=124 Identities=16% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHcCCccceeEeecCCCcceE--------EEe-cccCCccEEEEecCCCcceEE-E-ecCCccEEEEcceee---EEe
Q 020558 184 FFINNCPNLDDLRVGRSDNLLRL--------KVV-GSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYFGPEI---KLH 249 (324)
Q Consensus 184 ~ll~~cp~Le~L~l~~c~~~~~l--------~i~-~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~~~~~---~~~ 249 (324)
..+..+++|+.|+...+.....+ .+. .....|+.|+++++. +..+. + ..++|+.|.+.+... +-.
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~ 481 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGG
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchh
Confidence 34567788888883222111000 010 012468999998875 44332 2 347999999988754 235
Q ss_pred eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc--CC--CCCCcceeEEEEecc
Q 020558 250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF--PE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~--~~~~~L~~L~l~~~~ 316 (324)
++++++|+.+++........+ -+..+++|+.|.|+.+.+ ... |. ..+++|++|.|+...
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~lp-----~l~~l~~L~~L~Ls~N~l---~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNNRL---QQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-----GGTTCSSCCEEECCSSCC---CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred hhcCCCCCEEECCCCCCCCCc-----ccCCCCCCcEEECCCCCC---CCCCCcHHHhcCCCCCEEEecCCc
Confidence 778999999999862221111 356899999999998864 333 55 789999999997653
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.91 E-value=0.0061 Score=59.47 Aligned_cols=105 Identities=15% Similarity=0.011 Sum_probs=46.2
Q ss_pred HHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEeccc
Q 020558 186 INNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH 265 (324)
Q Consensus 186 l~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~ 265 (324)
+..++.|+.|+|.++.-...-.-...++.|++|.++++. +..+ +-.+.++++|+.+++....
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l-----------------p~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL-----------------PAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC-----------------CGGGGGGTTCCEEECTTSC
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc-----------------ChhhhCCCCCCEEeCcCCc
Confidence 455666777777665422100001123555555555543 2211 1123445555555555411
Q ss_pred CCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 266 GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 266 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
..... .-+..+++|+.|.|+.+.+ ..+|. ..+++|++|.|+..
T Consensus 282 l~~lp----~~~~~l~~L~~L~L~~N~l---~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 282 LTSLP----AELGSCFQLKYFYFFDNMV---TTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSSCC----SSGGGGTTCSEEECCSSCC---CCCCSSTTSCTTCCCEECTTS
T ss_pred CCccC----hhhcCCCCCCEEECCCCCC---CccChhhhcCCCccEEeCCCC
Confidence 11111 1123556666666665543 23343 45556666666443
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.033 Score=48.45 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=66.7
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF 242 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~ 242 (324)
.+++.+.+.+. +....+..+...|++|++|++.++. ++.+.- -..|.+|++|.+.+- +..|.
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~------------ 265 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG------------ 265 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC------------
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh------------
Confidence 44455555553 5566677766778889888888653 222111 023445555555321 12111
Q ss_pred ceeeEEeeCCCCCce-EEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558 243 GPEIKLHVKNVPQLV-DVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF 312 (324)
Q Consensus 243 ~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (324)
...+.+|++|+ ++.+.........++ +.+|++|+.|.+..+....+..-....+++|++|+.
T Consensus 266 ----~~aF~~~~~L~~~l~l~~~l~~I~~~a----F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 266 ----QRVFSNCGRLAGTLELPASVTAIEFGA----FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ----TTTTTTCTTCCEEEEECTTCCEECTTT----TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ----HHHhhCChhccEEEEEcccceEEchhh----hhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 12366778887 777764221222223 458888888888655432222211156677777653
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.83 E-value=0.00082 Score=53.76 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCccceeEeecCCCcceE------EEecccCCccEEEEecCCCcceEEEecCCccEEEEccee-eEEeeC
Q 020558 179 EEILEFFINNCPNLDDLRVGRSDNLLRL------KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPE-IKLHVK 251 (324)
Q Consensus 179 ~~~l~~ll~~cp~Le~L~l~~c~~~~~l------~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~-~~~~~~ 251 (324)
.+.+..++..++.|++|+|.+|..++.- ..-..+++|++|++++|. +..- |.. ..-.+.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~-------------g~~~l~~~L~ 90 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDP-------------VAFALAEMLK 90 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChH-------------HHHHHHHHHH
Confidence 3568888999999999999998333221 111234678888888765 2110 000 000133
Q ss_pred CCCCceEEEEeccc-CCcccceeccccccCCCceEEEE--Eeeecceecc---cCC--CCCCcceeEEEEecc
Q 020558 252 NVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLEL--HVELNEEILQ---FPE--CDLPELRHLMFMLVH 316 (324)
Q Consensus 252 ~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l--~~~~~~~~~~---~~~--~~~~~L~~L~l~~~~ 316 (324)
..+.|+++++.... ...-...+.+.+...+.|+.|+| +.+.+ .... +.. ...++|++|.|+.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 45677777777522 21112234556778899999999 66655 2211 122 567899999997663
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.71 E-value=0.022 Score=44.60 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=18.5
Q ss_pred CccceeEeecCCCcceEE--EecccCCccEEEEecCC
Q 020558 190 PNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 190 p~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~ 224 (324)
+.|++|++.++.-. .+. .-..+++|++|+++++.
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 63 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ 63 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCc
Confidence 57788888776421 111 11234567777776553
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.67 E-value=0.0054 Score=48.23 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEEecCCccEEEE
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKY 241 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~ 241 (324)
+++|++|+|.+..++.- ....+..+++|++|++.++.- +.+. .-..+++|+.|+++++. +..+.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~-l~~~~----------- 92 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK-LQSLP----------- 92 (177)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC-ccccC-----------
Confidence 47899999998776531 112346789999999998742 2211 11234677777776653 22111
Q ss_pred cceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 242 FGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 242 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
+-.+.++++|+.+++...... ......+..+++|+.|+++.+.+
T Consensus 93 -----~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 93 -----NGVFDKLTQLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----HHHhhCCcccCEEECcCCcce---EeCHHHhcCCcccCEEEecCCCe
Confidence 012345566666666541111 11112234567777777766654
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.45 E-value=0.026 Score=45.05 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=18.5
Q ss_pred CccceeEeecCCCcceE--EEecccCCccEEEEecCC
Q 020558 190 PNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 190 p~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~ 224 (324)
+.|++|.+.+..-.... .+-...++|++|+++++.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence 36777777776321111 112234667777776654
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.11 E-value=0.063 Score=48.31 Aligned_cols=76 Identities=8% Similarity=-0.008 Sum_probs=39.6
Q ss_pred CCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCC-Cccee
Q 020558 234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDL-PELRH 309 (324)
Q Consensus 234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~ 309 (324)
++|+.+.+...... ..+.+|++|+.+.+.........++ +.+| +|+.+.+..+....+.......+ .+++.
T Consensus 300 ~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~a----F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 300 PKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSA----FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECTTS----SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred ccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcHHh----CCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 45555555432221 2355677777777743221122223 4577 99999998775311111111333 36778
Q ss_pred EEEEe
Q 020558 310 LMFML 314 (324)
Q Consensus 310 L~l~~ 314 (324)
|++-.
T Consensus 375 l~vp~ 379 (401)
T 4fdw_A 375 IRVPA 379 (401)
T ss_dssp EEECG
T ss_pred EEeCH
Confidence 87744
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.10 E-value=0.026 Score=50.51 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=20.2
Q ss_pred ccCCCceEEEEEeeecceecccCCCCCCcceeEEEEe
Q 020558 278 NYFPQLKTLELHVELNEEILQFPECDLPELRHLMFML 314 (324)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 314 (324)
.+|.+|+.+.+...-. .+.......|.+|+.+++..
T Consensus 340 ~~c~~L~~i~lp~~l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 340 RGCTSLSNINFPLSLR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEECCCTTCC-EECTTTBTTCTTCCEEEEEG
T ss_pred cCCCCCCEEEECcccc-EehHHHhhCCCCCCEEEECC
Confidence 4677777777643321 22222225667788877743
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.74 E-value=0.0057 Score=59.63 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE---EecC
Q 020558 159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE---ISCP 234 (324)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~---i~~p 234 (324)
..+..+++|+.|+|.+..+.. +..-+..+++|++|+|.++.-. .+ .--..+++|+.|+++++. +..+. -..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 345678999999999887652 2211337899999999988432 21 101345788888888765 33221 1224
Q ss_pred CccEEEEcceee---EEeeCCCCCceEEEEec
Q 020558 235 SLLSFKYFGPEI---KLHVKNVPQLVDVLIGG 263 (324)
Q Consensus 235 ~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~ 263 (324)
+|+.|.+.+... +-.++++++|+.+++..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 555555544422 11244445555555443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.32 E-value=0.11 Score=40.44 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=28.3
Q ss_pred eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558 250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV 315 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~ 315 (324)
+.++++|+.+++...... ......+..+++|+.|.|+.+.+ ...+. ..+++|++|.|+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLT---VLPAGVFDKLTQLTQLSLNDNQL---KSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCCCcC---ccChhhccCCCCCCEEECCCCcc---CEeCHHHhcCCCCCCEEEeCCC
Confidence 445566666666541111 11112234566666666665543 22222 45556666666443
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=92.24 E-value=0.11 Score=40.54 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=16.8
Q ss_pred ccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEe
Q 020558 278 NYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFML 314 (324)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~ 314 (324)
..+++|+.|.|+.+.+ ..++. ..+++|++|.|+.
T Consensus 78 ~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHL---KSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp TTCTTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCS
T ss_pred CCcchhhEEECCCCcc---ceeCHHHhccccCCCEEEeCC
Confidence 4555666666655543 12222 3455556555543
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=87.98 E-value=0.078 Score=41.50 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=34.7
Q ss_pred CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCC
Q 020558 164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCN 224 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~ 224 (324)
.++|++|+|.+..++.- ....+.++++|++|+|.+.. ++.+. +-..+++|+.|++++..
T Consensus 32 ~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence 37888888888776431 11225567888888888763 22211 11234667777766543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.58 E-value=0.5 Score=42.01 Aligned_cols=73 Identities=14% Similarity=-0.000 Sum_probs=35.8
Q ss_pred CCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeE
Q 020558 234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHL 310 (324)
Q Consensus 234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (324)
.+|+++.+...... ..+.+|.+|+++.|.......-.++| .+|++|+.+++..... . .. ....+.+|+.+
T Consensus 311 ~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~~~-~-~~-~~~~~~~L~~i 383 (394)
T 4gt6_A 311 ISLKSIDIPEGITQILDDAFAGCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGSRS-Q-WN-AISTDSGLQNL 383 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSCHH-H-HH-TCBCCCCC---
T ss_pred CCcCEEEeCCcccEehHhHhhCCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCcee-e-hh-hhhccCCCCEE
Confidence 45555554332221 24667888888887532222223333 5788888888875542 1 11 11456677777
Q ss_pred EEE
Q 020558 311 MFM 313 (324)
Q Consensus 311 ~l~ 313 (324)
.+.
T Consensus 384 ~i~ 386 (394)
T 4gt6_A 384 PVA 386 (394)
T ss_dssp ---
T ss_pred EeC
Confidence 663
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.56 E-value=1.3 Score=39.38 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=40.6
Q ss_pred cCCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCccee
Q 020558 233 CPSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRH 309 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 309 (324)
+.+|+++.+...... ..+.+|.+|+++.+.........++ +.+|++|+.+++..... .+ ......|.+||.
T Consensus 319 c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp~~~~-~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 319 CTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANA----FQGCINLKKVELPKRLE-QY-RYDFEDTTKFKW 392 (394)
T ss_dssp CTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEEGGGG-GG-GGGBCTTCEEEE
T ss_pred CCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehHHH----hhCCCCCCEEEECCCCE-Eh-hheecCCCCCcE
Confidence 356666666433222 2466788888877753211122223 46999999999975432 22 211156677776
Q ss_pred E
Q 020558 310 L 310 (324)
Q Consensus 310 L 310 (324)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 5
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=83.46 E-value=0.22 Score=38.69 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558 165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS 238 (324)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 238 (324)
++|++|+|.+..++.-. ...+.++++|++|+|.+..- +.+. +-..+++|++|++++.. +..+.- ..++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 45555555555443210 11133455555555555421 1110 01233555566555443 332221 2356666
Q ss_pred EEEcce
Q 020558 239 FKYFGP 244 (324)
Q Consensus 239 L~~~~~ 244 (324)
|.+.+.
T Consensus 107 L~L~~N 112 (170)
T 3g39_A 107 IWLLNN 112 (170)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 666554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.55 E-value=1.2 Score=39.43 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=42.4
Q ss_pred cCCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCccee
Q 020558 233 CPSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRH 309 (324)
Q Consensus 233 ~p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 309 (324)
+++|+.+.+...... ..+.+|.+|+++.|.........++ +.+|.+|+.+.|-..-. .+..-....|.+|+.
T Consensus 287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~-~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVT-KIPESAFSNCTALNN 361 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCC-BCCGGGGTTCTTCCE
T ss_pred ccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccC-EEhHhHhhCCCCCCE
Confidence 355666655433222 2456777777777653221122233 35888888888843321 222211267788888
Q ss_pred EEEEec
Q 020558 310 LMFMLV 315 (324)
Q Consensus 310 L~l~~~ 315 (324)
+.+...
T Consensus 362 i~~~~~ 367 (394)
T 4gt6_A 362 IEYSGS 367 (394)
T ss_dssp EEESSC
T ss_pred EEECCc
Confidence 887543
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.86 E-value=1.2 Score=39.14 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=27.8
Q ss_pred eCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558 250 VKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF 312 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (324)
+.+|++|+++.+... ......++ +.+|.+|+.++|...-. .+.......|.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTALK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTTCC-EECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccceehhhh----hcCCCCCCEEEcCcccc-EEHHHHhhCCCCCCEEEE
Confidence 456677777666531 11112222 34667777776643211 222211145556666655
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=81.79 E-value=0.27 Score=41.49 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=18.8
Q ss_pred CCCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeec
Q 020558 164 VKSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGR 199 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~ 199 (324)
+|+|++|+|++..+++ ..+..++..+|+|+.|+|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence 5556666666555443 12333444556666666654
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=76.38 E-value=1.9 Score=37.23 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=8.1
Q ss_pred ccCCCceEEEEEeee
Q 020558 278 NYFPQLKTLELHVEL 292 (324)
Q Consensus 278 ~~~~~L~~L~l~~~~ 292 (324)
..+++|+.|+|+.+.
T Consensus 77 ~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNA 91 (347)
T ss_dssp GSCSCCCEEECCSSC
T ss_pred cCCcCCCEEeCCCCc
Confidence 455555555555543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.06 E-value=0.79 Score=40.36 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=32.0
Q ss_pred cCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEe
Q 020558 233 CPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHV 290 (324)
Q Consensus 233 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 290 (324)
+++|+.+.+.+... ...+.+|.+|+++.+.......-.++| .+|++|+.+++..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC
Confidence 35666666654321 124678899998887532222223333 5888898887743
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=69.34 E-value=4 Score=35.14 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=32.7
Q ss_pred eCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558 250 VKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV 315 (324)
Q Consensus 250 ~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 315 (324)
+..+++|+.+++.. .... ......+..+++|+.|+|+.+.+.. ..+. ..+++|++|+|+..
T Consensus 27 l~~~~~L~~L~l~~~n~l~---~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ---HLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC---EECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSS
T ss_pred CCCCCCeeEEEccCCCCCC---CcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCCC
Confidence 44555666666652 1111 1111234577888888887775411 1121 56677777777554
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=50.20 E-value=5 Score=33.57 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=46.0
Q ss_pred ecCCccEEEEcceeeEE------eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC-----
Q 020558 232 SCPSLLSFKYFGPEIKL------HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP----- 300 (324)
Q Consensus 232 ~~p~L~~L~~~~~~~~~------~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~----- 300 (324)
..|+|++|.+++....- .+..+++|+.+++........ ..+.. +..+ +|+.|.|+.+.... ..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~-l~~l-~L~~L~L~~Npl~~--~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK-IKGL-KLEELWLDGNSLCD--TFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG-GTTS-CCSEEECTTSTTGG--GCSSHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh-cccC-CcceEEccCCcCcc--ccCcchhH
Confidence 45889999988775421 234689999999976221111 11211 2344 89999998887521 122
Q ss_pred --C--CCCCcceeEE
Q 020558 301 --E--CDLPELRHLM 311 (324)
Q Consensus 301 --~--~~~~~L~~L~ 311 (324)
. ..||+|+.|.
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 1 6788888875
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=34.23 E-value=22 Score=28.13 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCCCCcEEEeeeE-EeCHHHHHHH---HHcCCccceeEeecCCCcc----eE-EEecccCCccEEEEecCCCcceEEEec
Q 020558 163 RVKSLRFLYFDTV-NVTEEILEFF---INNCPNLDDLRVGRSDNLL----RL-KVVGSLLQLKCLHIDHCNNLEELEISC 233 (324)
Q Consensus 163 ~~~~L~~L~L~~~-~~~~~~l~~l---l~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~i~~c~~l~~l~i~~ 233 (324)
.-+.|++|+|.+. .+++++...| +.....|++|+|.+|.--. .+ ..-....+|++|++.... +..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~----- 112 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTP----- 112 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH-----
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCH-----
Confidence 3467888888775 6777664444 4456678888887764211 00 000122567777766543 110
Q ss_pred CCccEEEEcceee-EEeeCCCCCceEEEEecc-c---CCcccceeccccccCCCceEEEEEeee
Q 020558 234 PSLLSFKYFGPEI-KLHVKNVPQLVDVLIGGG-H---GIGKGKVIGPIVNYFPQLKTLELHVEL 292 (324)
Q Consensus 234 p~L~~L~~~~~~~-~~~~~~~~~L~~l~l~~~-~---~~~~~~~~~~l~~~~~~L~~L~l~~~~ 292 (324)
.|... .-.+..-..|+++++... . .......+.+.+..-+.|+.|.++++.
T Consensus 113 --------~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 --------ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp --------HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred --------HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 00000 001223344666666531 1 111122455566667777777776554
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=32.25 E-value=23 Score=27.97 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=35.9
Q ss_pred CCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCCC-cce---E-EEecccCCccEEEEecC
Q 020558 164 VKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSDN-LLR---L-KVVGSLLQLKCLHIDHC 223 (324)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~-~~~---l-~i~~~~~~L~~L~i~~c 223 (324)
-..|+.|+|.++.++|.+ +...+.....|++|+|.+..- ... + .......+|++|.++++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 457888888888887765 444456677788888876531 110 0 00112256777777654
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=31.74 E-value=19 Score=26.08 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred CceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558 255 QLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293 (324)
Q Consensus 255 ~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 293 (324)
+|+.+++......... .+.+..+++|+.|.|..+.+
T Consensus 32 ~l~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP---PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCC---TTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccC---hhhhhhccccCEEEecCCCe
Confidence 5777766652211111 13345667777777776655
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.15 E-value=36 Score=23.40 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=19.3
Q ss_pred eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEee
Q 020558 250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVE 291 (324)
Q Consensus 250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 291 (324)
+.+|.+|+++.|-......-.++| .+|.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcCC
Confidence 445666666666542222223333 36666666666543
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.52 E-value=50 Score=19.14 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=12.1
Q ss_pred ccCCCCChHHHHHHHhc
Q 020558 15 DWVSRLPDDILVNIISR 31 (324)
Q Consensus 15 d~~s~LPd~vl~~Ils~ 31 (324)
+-|+.||.||-.+|++-
T Consensus 19 eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGTTTSCHHHHHHHTTC
T ss_pred HHHHHCcHHHHHHHHhc
Confidence 45777777777777764
Done!