Query 020560
Match_columns 324
No_of_seqs 281 out of 453
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 99.8 3.7E-22 1.3E-26 212.3 4.7 123 38-167 559-705 (854)
2 2crn_A Ubash3A protein; compac 99.7 1.9E-18 6.5E-23 130.4 6.2 57 112-168 7-63 (64)
3 1vek_A UBP14, ubiquitin-specif 99.7 7E-17 2.4E-21 127.8 7.8 59 110-168 25-83 (84)
4 2dag_A Ubiquitin carboxyl-term 99.7 8.2E-17 2.8E-21 124.6 7.6 59 110-168 5-63 (74)
5 1whc_A RSGI RUH-027, UBA/UBX 3 99.6 3.2E-16 1.1E-20 118.0 6.1 54 111-164 6-59 (64)
6 2dak_A Ubiquitin carboxyl-term 99.6 5.8E-16 2E-20 116.0 6.3 57 110-167 5-61 (63)
7 2dai_A Ubadc1, ubiquitin assoc 99.6 9.2E-16 3.2E-20 121.2 7.4 57 110-167 25-81 (83)
8 2lbc_A Ubiquitin carboxyl-term 99.5 2E-14 7E-19 120.5 8.7 55 112-166 1-55 (126)
9 2cpw_A CBL-interacting protein 99.5 2.1E-14 7.3E-19 108.1 4.4 46 113-158 18-63 (64)
10 1wgn_A UBAP1, ubiquitin associ 99.4 2.9E-13 9.9E-18 101.0 4.8 43 114-157 19-61 (63)
11 1wji_A Tudor domain containing 99.4 1.6E-12 5.6E-17 97.6 8.0 55 112-167 7-61 (63)
12 2ekk_A UBA domain from E3 ubiq 99.3 2.1E-12 7.2E-17 91.2 4.7 43 110-154 5-47 (47)
13 1wiv_A UBP14, ubiquitin-specif 99.3 3.6E-12 1.2E-16 98.3 6.1 48 110-158 25-72 (73)
14 2dkl_A Trinucleotide repeat co 99.3 1E-11 3.6E-16 98.4 7.6 52 111-163 18-69 (85)
15 1dv0_A DNA repair protein HHR2 99.2 1.5E-12 5.2E-17 92.4 2.1 45 113-158 3-47 (47)
16 4ae4_A Ubiquitin-associated pr 99.2 3.2E-12 1.1E-16 106.9 3.4 49 112-161 6-56 (118)
17 2g3q_A Protein YBL047C; endocy 99.2 8.5E-12 2.9E-16 86.3 4.6 41 113-154 3-43 (43)
18 2cos_A Serine/threonine protei 99.2 1.9E-11 6.5E-16 88.8 5.0 42 111-152 6-47 (54)
19 1veg_A NEDD8 ultimate buster-1 99.1 8.3E-11 2.8E-15 92.9 7.8 47 110-157 25-71 (83)
20 2lbc_A Ubiquitin carboxyl-term 99.1 4.8E-11 1.6E-15 99.9 6.0 48 112-160 76-124 (126)
21 1ify_A HHR23A, UV excision rep 99.1 9.7E-11 3.3E-15 83.6 4.7 41 112-153 6-46 (49)
22 2jy5_A Ubiquilin-1; UBA, alter 99.0 4.6E-10 1.6E-14 81.0 5.1 40 114-154 12-52 (52)
23 1vg5_A RSGI RUH-014, rhomboid 99.0 8.5E-10 2.9E-14 85.2 6.2 46 110-156 25-70 (73)
24 2knz_A Ubiquilin-4; cytoplasm, 99.0 8.2E-10 2.8E-14 80.0 5.6 39 115-154 12-51 (53)
25 1z96_A DNA-damage, UBA-domain 98.9 2.3E-09 7.8E-14 72.3 4.9 36 115-151 5-40 (40)
26 2bwb_A Ubiquitin-like protein 98.7 1.2E-08 4.2E-13 71.9 5.3 39 114-153 7-46 (46)
27 2dah_A Ubiquilin-3; UBA domain 98.7 1.3E-08 4.4E-13 74.2 5.5 42 114-156 9-51 (54)
28 2dna_A Unnamed protein product 98.7 1.2E-08 4.2E-13 77.5 4.8 42 115-157 20-62 (67)
29 1vej_A Riken cDNA 4931431F19; 98.7 1.8E-08 6.3E-13 77.9 5.5 43 114-157 29-72 (74)
30 1wr1_B Ubiquitin-like protein 98.7 2.8E-08 9.5E-13 73.4 5.3 40 114-154 17-57 (58)
31 4ae4_A Ubiquitin-associated pr 98.5 8.2E-08 2.8E-12 80.2 5.1 43 111-154 73-115 (118)
32 1oqy_A HHR23A, UV excision rep 98.4 6.2E-08 2.1E-12 94.7 2.5 46 111-157 165-210 (368)
33 2ooa_A E3 ubiquitin-protein li 98.3 1.4E-06 4.7E-11 62.9 6.0 41 112-153 9-49 (52)
34 2cwb_A Chimera of immunoglobul 98.2 1.8E-06 6.1E-11 71.2 5.9 41 114-155 66-107 (108)
35 2juj_A E3 ubiquitin-protein li 98.1 2.1E-06 7E-11 62.6 4.5 45 111-156 4-48 (56)
36 2d9s_A CBL E3 ubiquitin protei 98.1 4.2E-06 1.4E-10 60.7 5.9 44 111-155 6-49 (53)
37 1oqy_A HHR23A, UV excision rep 98.1 9.2E-07 3.1E-11 86.4 2.5 46 111-157 322-367 (368)
38 2oo9_A E3 ubiquitin-protein li 97.9 2.2E-05 7.5E-10 55.2 5.9 39 115-154 5-43 (46)
39 3i3t_A Ubiquitin carboxyl-term 97.8 2.1E-06 7.3E-11 79.6 -0.5 52 43-101 227-284 (355)
40 2ayn_A Ubiquitin carboxyl-term 97.7 1.9E-06 6.7E-11 82.0 -2.2 54 41-101 208-268 (404)
41 1wiv_A UBP14, ubiquitin-specif 97.7 2.2E-06 7.6E-11 65.8 -1.9 38 144-190 2-39 (73)
42 2cp8_A NEXT to BRCA1 gene 1 pr 97.6 5.2E-05 1.8E-09 55.3 4.7 45 112-157 7-52 (54)
43 3ihp_A Ubiquitin carboxyl-term 97.6 2.7E-05 9.2E-10 83.2 4.6 46 111-157 717-762 (854)
44 3mhs_A Ubiquitin carboxyl-term 97.6 4E-06 1.4E-10 82.2 -2.8 52 43-101 339-396 (476)
45 3k9o_A Ubiquitin-conjugating e 97.6 7.2E-05 2.5E-09 66.9 5.6 38 115-153 164-201 (201)
46 2qsf_X RAD23, UV excision repa 97.5 6.8E-05 2.3E-09 66.3 4.3 43 113-156 129-171 (171)
47 1vjv_A Ubiquitin carboxyl-term 97.3 3.3E-05 1.1E-09 74.3 0.2 54 41-101 200-260 (415)
48 2y6e_A Ubiquitin carboxyl-term 97.3 2.6E-05 9E-10 73.6 -1.1 53 42-101 231-289 (367)
49 1wj7_A Hypothetical protein (R 97.2 0.00036 1.2E-08 57.1 5.4 41 115-156 40-81 (104)
50 2gfo_A Ubiquitin carboxyl-term 97.0 7.3E-05 2.5E-09 72.1 -0.8 52 43-101 269-326 (396)
51 3nhe_A Ubiquitin carboxyl-term 96.9 0.00012 4E-09 67.6 -0.2 52 43-101 217-274 (348)
52 1nb8_A Ubiquitin carboxyl-term 96.7 0.0003 1E-08 66.5 0.3 51 43-101 172-229 (353)
53 2f1z_A Ubiquitin carboxyl-term 96.3 0.00076 2.6E-08 67.3 0.7 51 43-101 341-398 (522)
54 3e46_A Ubiquitin-conjugating e 95.8 0.011 3.7E-07 55.0 5.8 38 115-153 216-253 (253)
55 1wgl_A TOLL-interacting protei 94.5 0.057 2E-06 39.6 5.1 46 110-157 5-53 (59)
56 2cp9_A EF-TS, EF-TSMT, elongat 93.8 0.085 2.9E-06 39.5 4.9 42 111-153 6-48 (64)
57 2dhy_A CUE domain-containing p 88.8 0.37 1.3E-05 36.2 3.7 42 113-156 17-61 (67)
58 1q02_A Sequestosome 1; helical 88.0 0.35 1.2E-05 34.8 2.9 34 116-150 12-47 (52)
59 2drp_A Protein (tramtrack DNA- 86.7 0.23 8E-06 34.2 1.4 42 4-52 9-50 (66)
60 2dmi_A Teashirt homolog 3; zin 85.9 1.3 4.3E-05 33.8 5.4 43 4-52 18-60 (115)
61 6rxn_A Rubredoxin; electron tr 85.2 0.29 9.8E-06 34.2 1.2 36 5-51 4-39 (46)
62 1bbo_A Human enhancer-binding 84.4 0.34 1.2E-05 32.3 1.3 38 6-52 2-39 (57)
63 2eps_A POZ-, at HOOK-, and zin 84.1 1.4 4.7E-05 29.5 4.3 41 4-52 11-51 (54)
64 2adr_A ADR1; transcription reg 84.1 0.55 1.9E-05 31.6 2.3 38 6-52 3-40 (60)
65 2yt9_A Zinc finger-containing 83.1 0.96 3.3E-05 33.1 3.4 23 4-26 6-28 (95)
66 2ct1_A Transcriptional repress 83.0 0.76 2.6E-05 32.7 2.8 42 4-52 14-55 (77)
67 1x5w_A Zinc finger protein 64, 81.7 0.85 2.9E-05 31.8 2.6 41 3-52 7-47 (70)
68 1otr_A Protein CUE2; protein-p 81.3 2.9 9.9E-05 29.5 5.1 41 115-156 5-47 (49)
69 2pwq_A Ubiquitin conjugating e 81.3 0.3 1E-05 44.1 0.0 37 115-152 178-214 (216)
70 1yk4_A Rubredoxin, RD; electro 80.4 0.27 9.3E-06 35.1 -0.5 43 5-51 2-44 (52)
71 3uk3_C Zinc finger protein 217 80.1 0.41 1.4E-05 31.8 0.4 39 5-52 4-42 (57)
72 1x6e_A Zinc finger protein 24; 80.1 0.81 2.8E-05 32.2 2.0 40 4-52 13-52 (72)
73 4gzn_C ZFP-57, zinc finger pro 78.9 0.76 2.6E-05 32.8 1.5 38 6-52 5-42 (60)
74 2lce_A B-cell lymphoma 6 prote 78.2 0.74 2.5E-05 32.5 1.3 40 4-52 16-55 (74)
75 1e8j_A Rubredoxin; iron-sulfur 78.1 0.35 1.2E-05 34.5 -0.5 43 5-51 3-45 (52)
76 2kn9_A Rubredoxin; metalloprot 77.1 0.35 1.2E-05 37.7 -0.8 43 5-51 27-69 (81)
77 2dmd_A Zinc finger protein 64, 76.5 1.4 4.7E-05 32.3 2.4 21 6-26 9-29 (96)
78 2v3b_B Rubredoxin 2, rubredoxi 76.4 0.34 1.2E-05 35.0 -1.0 43 5-51 3-45 (55)
79 2kna_A Baculoviral IAP repeat- 76.2 4.5 0.00015 32.4 5.5 66 115-187 28-99 (104)
80 2gqj_A Zinc finger protein KIA 76.0 0.57 2E-05 35.4 0.1 41 4-52 23-64 (98)
81 2d9h_A Zinc finger protein 692 75.7 0.87 3E-05 32.4 1.1 44 3-52 5-48 (78)
82 2ctd_A Zinc finger protein 512 75.0 1.9 6.6E-05 32.9 2.9 47 5-61 34-81 (96)
83 1a1h_A QGSR zinc finger peptid 74.8 1.3 4.5E-05 31.9 1.9 21 6-26 35-55 (90)
84 2ida_A Hypothetical protein; z 74.8 0.79 2.7E-05 37.0 0.7 41 7-50 36-83 (102)
85 3a43_A HYPD, hydrogenase nicke 74.8 2 6.8E-05 36.1 3.2 39 4-51 69-116 (139)
86 1ixs_A Holliday junction DNA h 74.7 3.9 0.00013 29.8 4.4 35 113-147 16-54 (62)
87 2cot_A Zinc finger protein 435 74.5 1.6 5.6E-05 30.9 2.3 41 4-53 17-57 (77)
88 1aip_C EF-TS, elongation facto 74.4 2.6 8.8E-05 37.8 4.0 36 116-152 5-41 (196)
89 2ghf_A ZHX1, zinc fingers and 74.0 1.5 5.2E-05 34.5 2.2 46 4-54 17-62 (102)
90 1s24_A Rubredoxin 2; electron 74.0 0.51 1.7E-05 37.3 -0.6 43 5-51 35-77 (87)
91 1xb2_B EF-TS, elongation facto 73.8 2.5 8.6E-05 39.9 4.0 39 113-152 3-42 (291)
92 4rxn_A Rubredoxin; electron tr 73.8 0.59 2E-05 33.7 -0.3 43 5-51 3-45 (54)
93 1dx8_A Rubredoxin; electron tr 73.1 0.46 1.6E-05 35.9 -1.0 43 5-51 7-49 (70)
94 1tte_A Ubiquitin-conjugating e 73.1 2.4 8.1E-05 38.2 3.5 28 113-140 168-195 (215)
95 2lv2_A Insulinoma-associated p 73.0 1.6 5.6E-05 33.2 2.1 39 5-52 28-66 (85)
96 2kmk_A Zinc finger protein GFI 71.7 1.5 5E-05 31.0 1.4 20 7-26 3-22 (82)
97 1x6h_A Transcriptional repress 71.5 2.6 8.8E-05 30.0 2.8 42 4-51 14-56 (86)
98 2wbt_A B-129; zinc finger; 2.7 71.3 1.8 6.2E-05 33.7 2.0 37 5-52 74-110 (129)
99 1tr8_A Conserved protein (MTH1 70.9 4.9 0.00017 32.3 4.5 39 111-150 62-101 (102)
100 2epr_A POZ-, at HOOK-, and zin 70.6 4.6 0.00016 25.9 3.6 38 4-50 11-48 (48)
101 2epq_A POZ-, at HOOK-, and zin 70.0 4 0.00014 25.7 3.2 37 4-49 9-45 (45)
102 2eod_A TNF receptor-associated 69.6 2.5 8.5E-05 29.2 2.2 37 5-52 10-47 (66)
103 2ee8_A Protein ODD-skipped-rel 69.2 2.6 8.8E-05 31.4 2.4 41 5-54 17-57 (106)
104 2rpc_A Zinc finger protein ZIC 68.4 2.8 9.5E-05 33.5 2.6 55 3-58 23-78 (155)
105 2yt9_A Zinc finger-containing 68.1 2.1 7E-05 31.2 1.6 45 4-55 34-78 (95)
106 2ee8_A Protein ODD-skipped-rel 68.1 3 0.0001 31.0 2.6 49 4-61 44-92 (106)
107 1llm_C Chimera of ZIF23-GCN4; 66.9 1.4 4.9E-05 32.1 0.5 42 6-56 4-45 (88)
108 1wjp_A Zinc finger protein 295 66.1 3.8 0.00013 30.8 2.8 42 4-56 15-56 (107)
109 2dmd_A Zinc finger protein 64, 65.6 2.2 7.5E-05 31.1 1.3 43 5-56 36-78 (96)
110 2csh_A Zinc finger protein 297 64.6 2 6.9E-05 32.3 1.0 47 5-61 10-56 (110)
111 3rk3_E Complexin-1; snare prot 64.4 16 0.00055 26.8 5.6 35 223-257 11-46 (63)
112 2dlq_A GLI-kruppel family memb 64.3 3.2 0.00011 31.5 2.1 50 3-61 5-54 (124)
113 2dlq_A GLI-kruppel family memb 60.4 4.3 0.00015 30.7 2.2 21 6-26 36-56 (124)
114 2csh_A Zinc finger protein 297 60.0 4.4 0.00015 30.4 2.1 40 4-52 36-75 (110)
115 1wjp_A Zinc finger protein 295 59.6 3.2 0.00011 31.2 1.3 41 6-56 43-83 (107)
116 2k5c_A Uncharacterized protein 59.1 1.3 4.6E-05 34.8 -0.9 43 6-51 9-60 (95)
117 2ej4_A Zinc finger protein ZIC 58.0 6.2 0.00021 28.6 2.6 49 5-54 25-74 (95)
118 1zu1_A DSRBP-ZFA, RNA binding 57.5 2 6.7E-05 35.3 -0.3 63 5-67 32-118 (127)
119 2kdx_A HYPA, hydrogenase/ureas 56.7 4.1 0.00014 32.9 1.5 27 4-51 72-99 (119)
120 3c5k_A HD6, histone deacetylas 56.2 3.6 0.00012 33.3 1.1 42 7-50 38-82 (109)
121 2kmk_A Zinc finger protein GFI 55.7 3.7 0.00013 28.8 1.0 39 5-52 29-67 (82)
122 1f2i_G Fusion of N-terminal 17 53.6 6.3 0.00022 27.3 1.9 40 4-52 18-59 (73)
123 1ubd_C Protein (YY1 zinc finge 53.4 7.4 0.00025 29.6 2.5 45 2-56 2-48 (124)
124 2lt7_A Transcriptional regulat 52.6 3.3 0.00011 33.6 0.3 38 6-52 23-60 (133)
125 1vd4_A Transcription initiatio 52.1 12 0.00041 25.6 3.2 37 4-52 13-49 (62)
126 3mhs_A Ubiquitin carboxyl-term 50.6 5.2 0.00018 38.7 1.4 43 6-50 63-106 (476)
127 2ema_A Zinc finger protein 347 48.8 21 0.00072 22.1 3.8 36 4-48 11-46 (46)
128 2el6_A Zinc finger protein 268 48.6 19 0.00064 22.5 3.5 35 5-48 12-46 (46)
129 1kil_E Complexin I snare-compl 48.2 20 0.00068 25.2 3.7 32 227-258 12-44 (49)
130 2eop_A Zinc finger protein 268 47.0 21 0.00073 22.0 3.6 36 4-48 11-46 (46)
131 4dbg_B Ring finger protein 31; 46.9 14 0.00047 32.2 3.3 35 117-152 105-140 (162)
132 1twf_L ABC10-alpha, DNA-direct 46.8 14 0.00047 27.7 2.9 8 44-51 47-54 (70)
133 2emy_A Zinc finger protein 268 45.8 24 0.00082 21.9 3.7 36 4-48 11-46 (46)
134 2m0e_A Zinc finger and BTB dom 45.6 6.6 0.00023 21.4 0.8 10 43-52 3-12 (29)
135 2lvu_A Zinc finger and BTB dom 51.3 4.4 0.00015 22.1 0.0 10 43-52 3-12 (26)
136 2eml_A Zinc finger protein 28 45.3 29 0.00099 21.5 4.1 36 4-48 11-46 (46)
137 2ep2_A Zinc finger protein 484 45.3 28 0.00097 21.5 4.0 36 4-48 11-46 (46)
138 2jp9_A Wilms tumor 1; DNA bind 45.1 7.2 0.00025 29.3 1.2 21 6-26 37-59 (119)
139 2dlk_A Novel protein; ZF-C2H2 45.0 20 0.00068 24.8 3.5 51 5-63 7-61 (79)
140 2j7j_A Transcription factor II 44.9 6.7 0.00023 27.5 0.9 20 7-26 3-24 (85)
141 2epw_A Zinc finger protein 268 44.7 24 0.00081 21.8 3.5 36 4-48 11-46 (46)
142 2ep0_A Zinc finger protein 28 44.5 28 0.00094 21.6 3.8 36 4-48 11-46 (46)
143 2wbs_A Krueppel-like factor 4; 44.2 13 0.00043 26.4 2.3 21 6-26 6-28 (89)
144 2uzg_A Ubiquitin carboxyl-term 44.1 8 0.00027 30.4 1.3 43 6-50 39-86 (97)
145 2ve7_A Kinetochore protein HEC 44.1 1.5E+02 0.0051 27.7 10.3 41 112-152 68-112 (315)
146 2lt7_A Transcriptional regulat 44.0 6.4 0.00022 31.8 0.8 41 5-54 50-90 (133)
147 2el4_A Zinc finger protein 268 43.7 26 0.00089 21.6 3.6 36 4-48 11-46 (46)
148 2eoe_A Zinc finger protein 347 43.4 25 0.00086 21.7 3.5 36 4-48 11-46 (46)
149 2ytk_A Zinc finger protein 347 43.4 27 0.00092 21.6 3.7 36 4-48 11-46 (46)
150 2lvt_A Zinc finger and BTB dom 49.3 5 0.00017 22.3 0.0 10 43-52 3-12 (29)
151 2en8_A Zinc finger protein 224 43.3 29 0.00099 21.4 3.8 36 4-48 11-46 (46)
152 1klr_A Zinc finger Y-chromosom 43.3 6.1 0.00021 21.7 0.4 10 43-52 3-12 (30)
153 2g45_A Ubiquitin carboxyl-term 43.2 7.5 0.00026 32.4 1.1 44 7-50 48-103 (129)
154 2ebt_A Krueppel-like factor 5; 43.1 17 0.00057 26.3 2.9 21 6-26 16-38 (100)
155 2em0_A Zinc finger protein 224 43.1 25 0.00085 21.8 3.4 35 5-48 12-46 (46)
156 2i13_A AART; DNA binding, zinc 42.9 8.5 0.00029 31.8 1.4 21 6-26 106-126 (190)
157 2em5_A ZFP-95, zinc finger pro 42.7 31 0.0011 21.4 3.9 36 4-48 11-46 (46)
158 2emk_A Zinc finger protein 28 42.1 26 0.0009 21.7 3.4 36 4-48 11-46 (46)
159 2lvr_A Zinc finger and BTB dom 48.2 5.3 0.00018 22.1 0.0 11 42-52 3-13 (30)
160 2eme_A Zinc finger protein 473 42.0 35 0.0012 21.0 4.0 36 4-48 11-46 (46)
161 2emm_A ZFP-95, zinc finger pro 41.7 30 0.001 21.3 3.6 36 4-48 11-46 (46)
162 2eq0_A Zinc finger protein 347 41.6 32 0.0011 21.3 3.8 36 4-48 11-46 (46)
163 2emf_A Zinc finger protein 484 41.1 31 0.0011 21.4 3.7 36 4-48 11-46 (46)
164 2ene_A Zinc finger protein 347 40.8 34 0.0012 21.1 3.8 36 4-48 11-46 (46)
165 2eov_A Zinc finger protein 484 40.6 28 0.00096 21.4 3.4 35 5-48 12-46 (46)
166 2km4_A Regulator of TY1 transp 40.3 16 0.00053 30.3 2.6 34 124-157 1-36 (142)
167 2ytj_A Zinc finger protein 484 40.2 35 0.0012 21.1 3.8 36 4-48 11-46 (46)
168 2en6_A Zinc finger protein 268 40.1 30 0.001 21.4 3.5 36 4-48 11-46 (46)
169 2ytd_A Zinc finger protein 473 40.1 32 0.0011 21.3 3.6 36 4-48 11-46 (46)
170 2emx_A Zinc finger protein 268 40.0 32 0.0011 21.0 3.6 36 4-48 9-44 (44)
171 2qho_B E3 ubiquitin-protein li 40.0 89 0.003 22.2 6.0 45 111-156 6-52 (53)
172 2ytq_A Zinc finger protein 268 39.6 33 0.0011 21.3 3.6 35 5-48 12-46 (46)
173 2em7_A Zinc finger protein 224 39.6 31 0.0011 21.3 3.5 35 5-48 12-46 (46)
174 2enc_A Zinc finger protein 224 39.4 37 0.0013 20.9 3.8 36 4-48 11-46 (46)
175 2ytn_A Zinc finger protein 347 39.1 29 0.00099 21.5 3.3 35 5-48 12-46 (46)
176 2em9_A Zinc finger protein 224 39.0 33 0.0011 21.1 3.6 36 4-48 11-46 (46)
177 2ysp_A Zinc finger protein 224 38.8 34 0.0011 21.1 3.6 36 4-48 11-46 (46)
178 2eoq_A Zinc finger protein 224 38.8 32 0.0011 21.2 3.5 35 5-48 12-46 (46)
179 2em8_A Zinc finger protein 224 38.2 28 0.00097 21.6 3.1 36 4-48 11-46 (46)
180 2en1_A Zinc finger protein 224 38.1 32 0.0011 21.3 3.4 36 4-48 11-46 (46)
181 2eq4_A Zinc finger protein 224 38.0 35 0.0012 21.0 3.5 36 4-48 11-46 (46)
182 2epx_A Zinc finger protein 28 37.9 37 0.0013 20.9 3.7 36 5-48 12-47 (47)
183 2yso_A ZFP-95, zinc finger pro 37.7 35 0.0012 21.1 3.5 35 5-48 12-46 (46)
184 2kvf_A Zinc finger and BTB dom 37.6 24 0.00081 19.1 2.4 21 6-26 4-24 (28)
185 2epz_A Zinc finger protein 28 37.4 36 0.0012 21.0 3.5 35 5-48 12-46 (46)
186 2elz_A Zinc finger protein 224 36.8 34 0.0011 21.2 3.3 35 5-48 12-46 (46)
187 2emh_A Zinc finger protein 484 36.3 31 0.001 21.3 3.0 36 4-48 11-46 (46)
188 2ytr_A Zinc finger protein 347 35.6 33 0.0011 21.1 3.1 35 5-48 12-46 (46)
189 2emp_A Zinc finger protein 347 35.4 32 0.0011 21.2 3.1 36 4-48 11-46 (46)
190 2jp9_A Wilms tumor 1; DNA bind 35.3 9.7 0.00033 28.5 0.5 22 5-26 6-29 (119)
191 2eoo_A ZFP-95, zinc finger pro 34.6 35 0.0012 21.1 3.1 36 4-48 11-46 (46)
192 2kvh_A Zinc finger and BTB dom 34.5 27 0.00092 18.8 2.3 22 5-26 3-24 (27)
193 1ard_A Yeast transcription fac 34.3 25 0.00086 18.9 2.1 21 6-26 3-23 (29)
194 1znf_A 31ST zinc finger from X 34.1 26 0.00089 18.6 2.2 21 6-26 2-22 (27)
195 2i13_A AART; DNA binding, zinc 33.8 12 0.00042 30.7 1.0 22 5-26 77-98 (190)
196 2ely_A Zinc finger protein 224 33.6 34 0.0012 21.2 2.9 35 5-48 12-46 (46)
197 1pft_A TFIIB, PFTFIIBN; N-term 33.5 12 0.0004 25.6 0.6 13 1-13 1-13 (50)
198 1v92_A NSFL1 cofactor P47; 3-h 33.4 55 0.0019 21.4 4.1 38 116-154 7-45 (46)
199 2ytm_A Zinc finger protein 28 33.3 30 0.001 21.5 2.6 35 5-48 12-46 (46)
200 2dam_A ETEA protein; KIAA0887, 33.1 91 0.0031 22.7 5.5 42 114-156 18-61 (67)
201 2ztd_A Holliday junction ATP-d 33.0 57 0.002 29.1 5.3 24 115-138 165-188 (212)
202 1cuk_A RUVA protein; DNA repai 33.0 44 0.0015 29.5 4.5 32 114-145 160-193 (203)
203 1rik_A E6APC1 peptide; E6-bind 32.6 27 0.00091 18.9 2.1 21 6-26 3-23 (29)
204 2dal_A Protein KIAA0794; FAS a 31.9 1.3E+02 0.0044 21.4 6.1 41 115-156 16-57 (62)
205 2m0d_A Zinc finger and BTB dom 31.5 40 0.0014 18.0 2.7 21 6-26 4-24 (30)
206 2kvg_A Zinc finger and BTB dom 31.4 28 0.00097 18.9 2.0 21 6-26 4-24 (27)
207 2ep3_A Zinc finger protein 484 31.4 56 0.0019 20.0 3.7 26 4-31 11-36 (46)
208 2di0_A Activating signal coint 31.0 84 0.0029 23.6 5.1 37 116-153 15-53 (71)
209 2yu8_A Zinc finger protein 347 30.5 31 0.0011 21.3 2.3 36 4-48 11-46 (46)
210 4efa_E V-type proton ATPase su 30.4 2.7E+02 0.0094 24.3 14.0 20 176-195 6-25 (233)
211 2kfq_A FP1; protein, de novo p 30.4 7.9 0.00027 22.5 -0.6 10 43-52 3-12 (32)
212 2ytb_A Zinc finger protein 32; 29.8 17 0.00057 22.0 0.8 13 42-54 11-23 (42)
213 2ytg_A ZFP-95, zinc finger pro 29.4 31 0.0011 21.3 2.2 22 5-26 12-33 (46)
214 2em2_A Zinc finger protein 28 28.6 63 0.0022 19.8 3.6 36 4-48 11-46 (46)
215 1rim_A E6APC2 peptide; E6-bind 28.6 32 0.0011 19.9 2.0 21 6-26 3-23 (33)
216 1srk_A Zinc finger protein ZFP 28.2 59 0.002 18.4 3.2 22 5-26 7-28 (35)
217 1njq_A Superman protein; zinc- 27.5 58 0.002 19.2 3.2 22 5-26 6-27 (39)
218 2xzm_5 Ribosomal protein S26E 27.5 20 0.00068 29.7 1.1 46 4-49 19-80 (119)
219 2k2d_A Ring finger and CHY zin 27.3 29 0.001 26.4 2.0 29 4-51 36-64 (79)
220 2dlk_A Novel protein; ZF-C2H2 27.2 28 0.00095 24.0 1.8 40 4-52 37-78 (79)
221 1paa_A Yeast transcription fac 27.1 38 0.0013 18.3 2.1 20 6-25 3-22 (30)
222 2j7j_A Transcription factor II 26.7 17 0.00058 25.2 0.5 36 4-51 30-70 (85)
223 2ctu_A Zinc finger protein 483 26.5 5.1 0.00017 27.3 -2.3 41 4-60 17-57 (73)
224 2eos_A B-cell lymphoma 6 prote 26.4 22 0.00076 21.6 1.0 11 42-52 11-21 (42)
225 2m0f_A Zinc finger and BTB dom 25.8 37 0.0013 18.1 1.8 21 6-26 3-23 (29)
226 2elx_A Zinc finger protein 406 25.6 64 0.0022 18.1 3.0 22 5-26 7-28 (35)
227 1p7a_A BF3, BKLF, kruppel-like 24.9 65 0.0022 18.5 3.0 12 43-54 12-23 (37)
228 2elq_A Zinc finger protein 406 24.6 68 0.0023 18.4 3.0 22 5-26 9-30 (36)
229 2elr_A Zinc finger protein 406 24.4 56 0.0019 18.6 2.6 21 6-26 10-30 (36)
230 2k5r_A Uncharacterized protein 24.1 33 0.0011 27.3 1.8 71 5-75 8-91 (97)
231 2igp_A Retinoblastoma-associat 24.1 33 0.0011 28.0 1.9 41 112-152 70-114 (120)
232 2i50_A Ubiquitin carboxyl-term 24.1 24 0.00081 29.1 1.0 43 6-50 55-104 (126)
233 3eyy_A Putative iron uptake re 23.7 26 0.0009 28.7 1.2 45 5-51 90-139 (145)
234 1tf6_A Protein (transcription 23.5 46 0.0016 27.2 2.7 17 9-25 48-64 (190)
235 1loi_A Cyclic 3',5'-AMP specif 23.2 17 0.00058 22.0 -0.0 12 40-51 3-14 (26)
236 2ytt_A Zinc finger protein 473 22.6 38 0.0013 20.9 1.6 35 5-48 12-46 (46)
237 2elv_A Zinc finger protein 406 22.2 83 0.0028 18.0 3.1 22 5-26 9-30 (36)
238 3h0g_L DNA-directed RNA polyme 21.9 25 0.00085 25.9 0.6 25 27-51 6-30 (63)
239 2elo_A Zinc finger protein 406 21.6 63 0.0021 18.6 2.4 22 5-26 9-30 (37)
240 2els_A Zinc finger protein 406 21.1 75 0.0026 18.2 2.7 22 5-26 9-30 (36)
241 3nr7_A DNA-binding protein H-N 20.9 1.3E+02 0.0046 23.1 4.7 15 246-260 57-71 (86)
242 1zfd_A SWI5; DNA binding motif 20.7 32 0.0011 19.2 0.9 10 43-52 4-15 (32)
243 4ets_A Ferric uptake regulatio 20.2 33 0.0011 28.8 1.2 45 5-51 107-156 (162)
244 2el5_A Zinc finger protein 268 20.1 98 0.0034 18.3 3.2 22 5-26 10-31 (42)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.7e-22 Score=212.34 Aligned_cols=123 Identities=29% Similarity=0.484 Sum_probs=103.9
Q ss_pred hhhhhcccCCCCCCCCCccccccccccccccccccchhhccccccccc---Cccc---cCCccccccCCC---CC-CCCC
Q 020560 38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS---GS-QPEE 107 (324)
Q Consensus 38 e~v~e~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~---p~K~---~~~~~~lDl~~~---g~-~~Ee 107 (324)
|.+..|+|+.|+.+ ..++|++.|.+||++|+|+++||.++. +.|+ +..|..|||+.| |. ++|+
T Consensus 559 E~Le~y~C~~C~~k-------~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~ 631 (854)
T 3ihp_A 559 EQVDDFWSTALQAK-------SVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEE 631 (854)
T ss_dssp EEEEEEEETTTTEE-------EEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCC
T ss_pred eEeeeeeccccCCc-------ceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCce
Confidence 33444999999987 789999999999999999999999953 8888 778899999988 44 5553
Q ss_pred c--------------cccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 020560 108 M--------------VEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (324)
Q Consensus 108 ~--------------~~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~ 167 (324)
. ..+.+|+++|++|++|||+.++|.+||+.|||.+++.||+|||+||+|+||++|+..+.
T Consensus 632 ~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 632 ELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp BCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred ecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccc
Confidence 1 13457899999999999999999999999999999999999999999999999997764
No 2
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.74 E-value=1.9e-18 Score=130.39 Aligned_cols=57 Identities=40% Similarity=0.628 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~~ 168 (324)
.+|++.|.+|++|||++++|.+||++|||.+++.||+|||+|++|||||+|+..|.+
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~~~ 63 (64)
T 2crn_A 7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPSS 63 (64)
T ss_dssp CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCCSC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCCCC
Confidence 457788999999999999999999999999999999999999999999999977653
No 3
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.68 E-value=7e-17 Score=127.84 Aligned_cols=59 Identities=37% Similarity=0.638 Sum_probs=54.7
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~~ 168 (324)
.+.+|++.|.+|++|||++++|++||++|+|.|++.|++|||+|++|++||+|+..+++
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~~~~ 83 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPSS 83 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCCCCC
Confidence 45679999999999999999999999999988999999999999999999999987653
No 4
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=124.61 Aligned_cols=59 Identities=37% Similarity=0.738 Sum_probs=55.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~~ 168 (324)
.+.+|++.|.+|++|||++++|++||++|+|.+++.|++|||+|++|+++|+|+..|..
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~~~ 63 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGS 63 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCCCC
Confidence 45689999999999999999999999999988899999999999999999999988754
No 5
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.63 E-value=3.2e-16 Score=118.04 Aligned_cols=54 Identities=44% Similarity=0.788 Sum_probs=50.9
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPM 164 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~ 164 (324)
..+|++.|.+|++|||++.+|++||++|||.|++.|++|||+|++|+++|+|+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl~ 59 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLS 59 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccccC
Confidence 457889999999999999999999999987799999999999999999999986
No 6
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=116.02 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=53.4
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~ 167 (324)
.+.+++..|.+|++|||++.+|.+||++|+| +++.|++|||+|++|+|+|+|+..|.
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d~d~d~p~~~p~ 61 (63)
T 2dak_A 5 SSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPS 61 (63)
T ss_dssp SCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHSCCSSSCCCCSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCcccccCCCCCC
Confidence 3568999999999999999999999999998 89999999999999999999998775
No 7
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.2e-16 Score=121.21 Aligned_cols=57 Identities=40% Similarity=0.700 Sum_probs=52.7
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~ 167 (324)
.+.+|++.|.+|++|||++.+|.+||++|+| |++.|++|||+|++|+++|+|+..|.
T Consensus 25 ~~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d~d~d~pl~~~~ 81 (83)
T 2dai_A 25 DERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAEDPTIDTPLSGPS 81 (83)
T ss_dssp SSSCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGCSTTCCCCCCSS
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccccCCCCCC
Confidence 3568999999999999999999999999965 99999999999999999999987765
No 8
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=120.52 Aligned_cols=55 Identities=33% Similarity=0.733 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCC
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP 166 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~ 166 (324)
+||+..|.+|++|||+..+|.+||++|||.+++.||+||++|++|+++++|+..+
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~ 55 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMP 55 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccccccc
Confidence 4789999999999999999999999999999999999999999999999987665
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.47 E-value=2.1e-14 Score=108.10 Aligned_cols=46 Identities=35% Similarity=0.603 Sum_probs=44.1
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 020560 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (324)
Q Consensus 113 vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~d 158 (324)
+|++.|++|++|||++++|.+||++|+|.|++.|++|||+|++|||
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 6788999999999999999999999998899999999999999986
No 10
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.38 E-value=2.9e-13 Score=101.01 Aligned_cols=43 Identities=19% Similarity=0.480 Sum_probs=39.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 114 d~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
.++.|++|++|||+.+.|.+||++||| |+|.|+||||+|+|-.
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 457899999999999999999999998 9999999999999753
No 11
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.36 E-value=1.6e-12 Score=97.59 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=49.4
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~~~~~ 167 (324)
.++++.|.+|++|||++.+|.+||..|+| +++.|++|||+|.++.....|+..+.
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~~~~~~p~~~~~ 61 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGPS 61 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccCCCCCCCC
Confidence 47999999999999999999999999998 99999999999999987777765443
No 12
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=91.15 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
.+.+|+..|.+|++|||++.+|.+||+.|| |++.|++|||+|+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 5 SSGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTHP 47 (47)
T ss_dssp CCSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcCC
Confidence 467899999999999999999999999995 7999999999985
No 13
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.28 E-value=3.6e-12 Score=98.26 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=45.0
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~d 158 (324)
.+.+++..|.+|++|||++.+|++||+.|+| |++.|++|||+|++|+.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999999998 99999999999999973
No 14
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.26 E-value=1e-11 Score=98.41 Aligned_cols=52 Identities=31% Similarity=0.434 Sum_probs=45.1
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMP 163 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~didep~ 163 (324)
..+|++.|.+|++|||++.+|++||+. +|.+++.|++|||+|++|+|.....
T Consensus 18 ~~~n~~~I~qL~~MGF~~~~a~~AL~~-~n~n~e~A~ewL~~h~~D~D~~~~~ 69 (85)
T 2dkl_A 18 AWIMSRLIKQLTDMGFPREPAEEALKS-NNMNLDQAMSALLEKKVDVDKRGLG 69 (85)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH-TTSCHHHHHHHHHTTSCCSSCCCCT
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHH-cCCCHHHHHHHHHHCcCCcccccCC
Confidence 457899999999999999999999955 4559999999999999999865443
No 15
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.25 E-value=1.5e-12 Score=92.38 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=41.5
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 020560 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (324)
Q Consensus 113 vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~d 158 (324)
-+++.|++|++|||++..|.+||.++|+ |++.|++|||+|++|++
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDDE 47 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCCCCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcCCCC
Confidence 3678899999999999999999999985 99999999999999973
No 16
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.23 E-value=3.2e-12 Score=106.91 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=43.1
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc--CCCCCCC
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE--NDPDIDE 161 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~--dD~dide 161 (324)
..+.++|.+|++||||.++|.|||+.||| +++.||+|||.|+ +|+++|+
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~ 56 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDP 56 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCCh
Confidence 34678999999999999999999999999 9999999999998 3555444
No 17
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.22 E-value=8.5e-12 Score=86.33 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=38.0
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 113 vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
++++.|.+|++|||+++.|.+||+.++| |++.|++|||+|.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcCC
Confidence 4678999999999999999999999987 9999999999873
No 18
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.18 E-value=1.9e-11 Score=88.83 Aligned_cols=42 Identities=31% Similarity=0.530 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (324)
.++|...|++|++|||++++|.+||..|||.+++.||+||..
T Consensus 6 ~~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 6 SGVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CSCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 478999999999999999999999999999999999999975
No 19
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.15 E-value=8.3e-11 Score=92.92 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=43.5
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
...++++.|++|++|||++.+|++||..|+| +++.|++|||+|+++.
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~i 71 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGSL 71 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 4567899999999999999999999999998 8999999999999974
No 20
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.13 E-value=4.8e-11 Score=99.94 Aligned_cols=48 Identities=31% Similarity=0.617 Sum_probs=44.8
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC-CCCCC
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN-DPDID 160 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~d-D~did 160 (324)
.+++..|.+|++|||++++|.+||+.||| +++.|++|||+|++ |+|+|
T Consensus 76 ~~~e~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~~d~~~d 124 (126)
T 2lbc_A 76 QPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSD 124 (126)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCSSCCCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCccCCC
Confidence 47999999999999999999999999987 99999999999999 87765
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.08 E-value=9.7e-11 Score=83.58 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
..+++.|.+|++|||+++.|.+||+.|+| |++.|++|||+|
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 34678899999999999999999999998 999999999997
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.98 E-value=4.6e-10 Score=81.05 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=37.4
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 114 d~~~l~~L~~MGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
.+..|.+|++||| ++.++.+||..|+| |++.|++|||+|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhCc
Confidence 4678999999999 99999999999998 9999999999884
No 23
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.96 E-value=8.5e-10 Score=85.16 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=41.6
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
....+++.|.+|++|||++..|.+||..++| |++.|++|||.|.+.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP 70 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 3456789999999999999999999999998 999999999998765
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.95 E-value=8.2e-10 Score=79.97 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 115 ~~~l~~L~~MGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
+..|.+|++||| ++.++.+||..|+| |++.|++|||+|.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence 456999999999 99999999999998 9999999999986
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.87 E-value=2.3e-09 Score=72.29 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 020560 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~ 151 (324)
++.|.+|++|||+++.|.+||..|+| |++.|++|||
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 56899999999999999999999987 9999999995
No 26
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.73 E-value=1.2e-08 Score=71.91 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=34.8
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 114 d~~~l~~L~~MGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
-+..|.+|++|||+ +..+.+||..|+| |++.|++|||+|
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 35679999999995 7788999999987 999999999976
No 27
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.73 E-value=1.3e-08 Score=74.15 Aligned_cols=42 Identities=29% Similarity=0.352 Sum_probs=36.9
Q ss_pred CHHHHHHHHhCCCCH-HHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 114 DKELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 114 d~~~l~~L~~MGF~~-~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
-+..|.+|++|||+. .++.+||..|++ |++.|++|||+|.+.
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGP 51 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 367899999999965 567999999987 999999999999865
No 28
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.70 E-value=1.2e-08 Score=77.47 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCCH-HHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 115 KELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 115 ~~~l~~L~~MGF~~-~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
+..|.+|.+|||.. .++.+||..|+| |++.|++|||+|.++.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 56799999999954 555999999987 9999999999998885
No 29
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.69 E-value=1.8e-08 Score=77.88 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=38.3
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 114 d~~~l~~L~~MGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
-+..|.+|++||| .+.++.+||..++| |++.|++|||.|++.+
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGPS 72 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCCC
Confidence 4678999999999 58999999999987 9999999999987654
No 30
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.65 E-value=2.8e-08 Score=73.45 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=35.8
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 114 d~~~l~~L~~MGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
-+..|++|++|||+ +..+.+||..|++ |++.|++|||+|+
T Consensus 17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~ 57 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD 57 (58)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 35679999999995 7888999999987 9999999999985
No 31
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.51 E-value=8.2e-08 Score=80.16 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=38.9
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
..+++..+.+|++|||+...|++||..|+| +++.|++|||...
T Consensus 73 ~~~~~~~v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~~ 115 (118)
T 4ae4_A 73 MMEFLQLMSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 345778999999999999999999999998 9999999999753
No 32
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.42 E-value=6.2e-08 Score=94.68 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=42.6
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
...+++.|.+|++|||++++|.+||++++| |++.|++|||+|++|.
T Consensus 165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 165 GSEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPGS 210 (368)
T ss_dssp TTTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTTC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 345888999999999999999999999999 9999999999998885
No 33
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.28 E-value=1.4e-06 Score=62.94 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
+.-++.+++|++|||+++.|.+||..++| |++.|.+.|.+-
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 33448999999999999999999999988 999999999763
No 34
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.20 E-value=1.8e-06 Score=71.21 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=36.6
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 020560 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEN 155 (324)
Q Consensus 114 d~~~l~~L~~MGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~H~d 155 (324)
-+.-|++|.+||| .+.++.+||..+++ |++.||+|||++..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcCC
Confidence 4778999999999 46899999999987 99999999999754
No 35
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.14 E-value=2.1e-06 Score=62.62 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=39.4
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
+.+.+..+.+|++|||+++.+.+||..+.| |++.|.|.|.+-.--
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHcc
Confidence 445677899999999999999999999988 999999999885443
No 36
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.13 E-value=4.2e-06 Score=60.69 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=38.3
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~d 155 (324)
++.-+..+.+|++|||+++.+.+||..++| |++.|.+.|.+..-
T Consensus 6 ~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 6 SGQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp CSCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 344557799999999999999999999988 99999999987643
No 37
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.09 E-value=9.2e-07 Score=86.41 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=42.3
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
...+.+.++.|++|||++..|.+||+.+++ |++.|.+|||+|++|.
T Consensus 322 t~ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 322 TPQEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDD 367 (368)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHHHCCC
T ss_pred CCcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhCcCcC
Confidence 345899999999999999999999999986 8999999999999985
No 38
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.91 E-value=2.2e-05 Score=55.24 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
+..+.+|++|||+++.+.+||-.+.| |++.|.|-|.+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 45789999999999999999999988 9999999998754
No 39
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=97.82 E-value=2.1e-06 Score=79.58 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=44.5
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCc-cccccCCC
Q 020560 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (324)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~--p~K~---~~~~-~~lDl~~~ 101 (324)
|.|+.|+++ ..++|+..|.++|++|+|+.+||.... +.|+ +..| +.|||+.|
T Consensus 227 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~ 284 (355)
T 3i3t_A 227 PVCDRCRQK-------TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDF 284 (355)
T ss_dssp CCCSSSCCC-------CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGG
T ss_pred eeCCCCCCc-------cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhh
Confidence 999999987 789999999999999999999999875 6676 4456 56888755
No 40
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=97.74 E-value=1.9e-06 Score=82.04 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=46.7
Q ss_pred hhcccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCCC
Q 020560 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (324)
Q Consensus 41 ~e~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~----p~K~---~~~~~~lDl~~~ 101 (324)
+++.|+.||+. ..++|++.|.++|++|+|+.+||.+.. ..|+ +..|..|||+.|
T Consensus 208 l~~~c~~c~~~-------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 268 (404)
T 2ayn_A 208 ITKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYEL 268 (404)
T ss_dssp CCCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGG
T ss_pred eeecchhhCCc-------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHh
Confidence 45899999976 678999999999999999999999984 5677 667889999876
No 41
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.71 E-value=2.2e-06 Score=65.79 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 020560 144 EAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQEL 190 (324)
Q Consensus 144 E~A~~WL~~H~dD~didep~~~~~~~~~e~~k~~lT~EEk~~k~~el 190 (324)
++||+|||+||+|||||+|+..+. +-..+++..+|.+|
T Consensus 2 ~~am~wl~~h~dDpd~d~pl~~~~---------~~~~~~~v~~L~~M 39 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAPISHQT---------SDIDQSSVDTLLSF 39 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCCSS---------CSSCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCccCCCCCCC---------CCCCHHHHHHHHHc
Confidence 469999999999999999986521 11245666666555
No 42
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.65 E-value=5.2e-05 Score=55.27 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=38.7
Q ss_pred ccCHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 112 EVDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
+.+...|.+|.+||| ...+-.+||..+|+ |++.||++|+...+.+
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGPS 52 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSSC
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCCC
Confidence 346678999999999 89999999998876 8999999999876653
No 43
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.65 E-value=2.7e-05 Score=83.16 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=42.2
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 111 ~~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
..++++.+++|.+|||+...|.+||..|+| +++.|++|||+|++|.
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~~ 762 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDL 762 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCcccc
Confidence 457999999999999999999999999988 9999999999999874
No 44
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=97.58 E-value=4e-06 Score=82.25 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=46.1
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc---Cccc---cCCccccccCCC
Q 020560 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS 101 (324)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~---p~K~---~~~~~~lDl~~~ 101 (324)
|.|+.|+.. ..++|+..|.++|++|+|+.+||.+.. +.|+ +..|..|||+.|
T Consensus 339 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~ 396 (476)
T 3mhs_A 339 YHCGECNST-------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNY 396 (476)
T ss_dssp CEETTTTEE-------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGG
T ss_pred CcCCccCCc-------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhh
Confidence 999999986 789999999999999999999999753 7777 667889999877
No 45
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.57 E-value=7.2e-05 Score=66.86 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
++.|++|++|||+++.|..||...++ +++.|++|||+|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 67899999999999999999999887 999999999986
No 46
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.50 E-value=6.8e-05 Score=66.29 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=36.9
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 113 vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
.+.+.|..|++|||++..|..|+..++. |.+.|.+|||+|+.|
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~~~~d 171 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDK-NEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 3668899999999999999999999975 999999999998765
No 47
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=97.33 E-value=3.3e-05 Score=74.28 Aligned_cols=54 Identities=6% Similarity=-0.106 Sum_probs=38.7
Q ss_pred hhcccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCCC
Q 020560 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (324)
Q Consensus 41 ~e~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~----p~K~---~~~~~~lDl~~~ 101 (324)
+++.|+.|+.. ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..|||+.|
T Consensus 200 i~~~c~~c~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~ 260 (415)
T 1vjv_A 200 IEKRSDLTGAN-------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADM 260 (415)
T ss_dssp ---------CC-------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGG
T ss_pred hhhcccccCCc-------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHh
Confidence 45899999986 678999999999999999999999985 4676 567888999765
No 48
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=97.28 E-value=2.6e-05 Score=73.64 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=45.2
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCcc-ccccCCC
Q 020560 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEE-AIDVDMS 101 (324)
Q Consensus 42 e~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~--p~K~---~~~~~-~lDl~~~ 101 (324)
.|.|+.|+++ ..++|++.|.++|++|+||.+||.+.. ..|+ +..|. .|||+.|
T Consensus 231 ~~~C~~C~~~-------~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 289 (367)
T 2y6e_A 231 PWYCPNCKKH-------QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEF 289 (367)
T ss_dssp CEEETTTTEE-------ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGG
T ss_pred CccCCCCCCC-------ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhh
Confidence 3899999986 789999999999999999999999975 6676 55664 6998866
No 49
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.25 E-value=0.00036 Score=57.08 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=36.8
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 115 KELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 115 ~~~l~~L~~M-GF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
++.|..|++| ||++..|+.||..+++ +++.|+++||+...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 3568999999 9999999999999987 999999999987654
No 50
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=97.04 E-value=7.3e-05 Score=72.11 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=44.1
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCc-cccccCCC
Q 020560 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (324)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~--p~K~---~~~~-~~lDl~~~ 101 (324)
|.|+.|+.. ..++|++.|.++|++|+|+.+||.++. ..|+ +..| +.|||+.|
T Consensus 269 ~~C~~C~~~-------~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 326 (396)
T 2gfo_A 269 FYCSHCRAR-------RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQY 326 (396)
T ss_dssp EEETTTTEE-------ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGG
T ss_pred cccCCcccc-------cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhcccccc
Confidence 999999986 678999999999999999999999985 4566 4456 56898766
No 51
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=96.95 E-value=0.00012 Score=67.61 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=43.9
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCc-cccccCCC
Q 020560 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (324)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~--p~K~---~~~~-~~lDl~~~ 101 (324)
|.|+.|+.. ..++|+..|.++|++|+|+.+||.... ..|+ +..| ..|||+.|
T Consensus 217 ~~C~~C~~~-------~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~ 274 (348)
T 3nhe_A 217 PTCCRCRGR-------KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF 274 (348)
T ss_dssp CEETTTTEE-------CCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGG
T ss_pred eECCCCCCc-------ccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhh
Confidence 899999986 789999999999999999999998875 6666 4456 56888765
No 52
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=96.68 E-value=0.0003 Score=66.54 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=40.5
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCCC
Q 020560 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (324)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~----p~K~---~~~~~~lDl~~~ 101 (324)
|.|+.|+. ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..|||+.|
T Consensus 172 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~ 229 (353)
T 1nb8_A 172 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 229 (353)
T ss_dssp EECGGGCE--------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGG
T ss_pred ccCCcCcc--------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhh
Confidence 88999975 468999999999999999999999874 5676 667888998755
No 53
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=96.34 E-value=0.00076 Score=67.29 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=43.1
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCCC
Q 020560 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (324)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFPd~L~v~~~r~~l~~----p~K~---~~~~~~lDl~~~ 101 (324)
|.|+.|+. ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..|||+.|
T Consensus 341 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~ 398 (522)
T 2f1z_A 341 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 398 (522)
T ss_dssp BCCGGGCS--------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGG
T ss_pred eecCcCCc--------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhh
Confidence 88999986 468999999999999999999999874 5676 667888998754
No 54
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=95.81 E-value=0.011 Score=54.95 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
.+.|..|++|||+++.|..||...|. +++.|++.||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 56799999999999999999998876 999999999973
No 55
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.49 E-value=0.057 Score=39.60 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=38.4
Q ss_pred ccccCHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 020560 110 EPEVDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHENDP 157 (324)
Q Consensus 110 ~~~vd~~~l~~L~~MGF~---~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD~ 157 (324)
.+.+.++.+.+|.+| || ...++.+|..++| +++.||+-|++..++.
T Consensus 5 ~~~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEEP 53 (59)
T ss_dssp SSSSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCCC
T ss_pred CCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCCC
Confidence 467889999999999 75 5788888888776 9999999999966554
No 56
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.84 E-value=0.085 Score=39.48 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=36.4
Q ss_pred cccCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 111 ~~vd~~~l~~L~~-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
..++.+.|..|.+ -|.+...|++||..+++ |++.|+.||-..
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~k 48 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHKE 48 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4567788888876 59999999999999987 999999999764
No 57
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.82 E-value=0.37 Score=36.17 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=35.0
Q ss_pred cCHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 113 VDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 113 vd~~~l~~L~~MGF~---~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
.-+..+.+|.+| || ...+++.|..+|+ +++.||+-|+...++
T Consensus 17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence 356789999999 86 4788899999887 899999999886554
No 58
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=87.96 E-value=0.35 Score=34.78 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCHHHHH--HHHHHhCCCCHHHHHHHH
Q 020560 116 ELLKELEAMGFPVARAT--RALHYSGNANVEAAVNWV 150 (324)
Q Consensus 116 ~~l~~L~~MGF~~~~a~--kAL~~Tgn~~~E~A~~WL 150 (324)
++|.||++|||+-.-.- +.| .+.|-++..|+|-|
T Consensus 12 ~al~qMl~MGF~negGWLt~LL-~~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLL-QTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHH-HHccCCHHHHHHHh
Confidence 56899999999986653 544 44555899999876
No 59
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=86.74 E-value=0.23 Score=34.25 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=31.9
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|..||..+.....-+.|.. +-|.. + ...|.|+.||+.+
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~-~~H~~--~----~~~~~C~~C~k~f 50 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYV-TSHKR--N----VKVYPCPFCFKEF 50 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHH-HHSSS--S----CCCEECTTTCCEE
T ss_pred cceECCCCcchhCCHHHHHHHHH-HHcCC--C----CcCeECCCCCCcc
Confidence 45789999999999999999987 33521 1 2348999999863
No 60
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.95 E-value=1.3 Score=33.79 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|..||..+.....-+.|...+||.. +. .-+.|+.||+.+
T Consensus 18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~~--~~----~~~~C~~C~~~f 60 (115)
T 2dmi_A 18 SKFRCKDCSAAYDTLVELTVHMNETGHYR--DD----NHETDNNNPKRW 60 (115)
T ss_dssp CSEEBSSSSCEESSHHHHHHHHHHTCCCB--CS----CCCCCCCCCSCC
T ss_pred CCEECCccCchhcCHHHHHHHHHHhCccc--cC----CCccCCCCCccc
Confidence 34789999999999999999998666632 21 224599998763
No 61
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=85.20 E-value=0.29 Score=34.25 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=25.1
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
.-+|.+||.|-....+-- +-|.+. -.+++||.||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~--------t~f~~l---P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN--------VPFDQL---PDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT--------CCGGGS---CTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC--------cchhhC---CCCCcCcCCCCc
Confidence 358999999986432111 567665 556899999964
No 62
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=84.43 E-value=0.34 Score=32.26 Aligned_cols=38 Identities=21% Similarity=0.529 Sum_probs=30.5
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
.+|..||..+.....-+.|.. .|.. ...|.|+.||+.+
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 39 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIR--THTD-------VRPYHCTYCNFSF 39 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH--HTSS-------CCCEECSSSSCEE
T ss_pred CcCCCCcCcCCCHHHHHHHHH--hcCC-------CCCccCCCCCchh
Confidence 479999999999999999987 3543 1348999999864
No 63
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=84.11 E-value=1.4 Score=29.46 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=32.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|..|+..+.....-+.|.. +.|.. ..-|.|+.||+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~-~~H~~-------~k~~~C~~C~k~F 51 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIK-QVHTS-------ERPHKCQVWVSGP 51 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH-HTSCC-------CCCCCSSSSCCSS
T ss_pred CCeECCCCCcccCCHHHHHHHHH-HhcCC-------CCCccCCCCCCCC
Confidence 45789999999999999999976 45643 1348999999864
No 64
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=84.09 E-value=0.55 Score=31.63 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=30.7
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
.+|..||..+.....-+.|.. .|.. ...|.|+.||+.+
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 40 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYR--SHTN-------EKPYPCGLCNRAF 40 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHH--TTTS-------SCSEECTTTCCEE
T ss_pred CcCCCCccccCCHHHHHHHHH--HhCC-------CCCccCCCCCCcc
Confidence 579999999999999999987 4643 1348999999864
No 65
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.06 E-value=0.96 Score=33.08 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=14.1
Q ss_pred ceeecccCcccccchHHHHHHHH
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae 26 (324)
-..+|..|+..+.....-+.|..
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~ 28 (95)
T 2yt9_A 6 SGVACEICGKIFRDVYHLNRHKL 28 (95)
T ss_dssp SCEECSSSCCEESSSHHHHHHHH
T ss_pred CCeECCCCCCccCChHHHHHHHH
Confidence 34566666666666666666655
No 66
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.04 E-value=0.76 Score=32.72 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=32.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-...|..|+..+.....-+.|.. +-|.. ....|.|+.|++.|
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~-~~h~~------~~~~~~C~~C~~~f 55 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHIL-QKHTE------NVAKFHCPHCDTVI 55 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHH-HHSSS------SCSSEECSSSSCEE
T ss_pred CCeECCCcCchhCCHHHHHHHHH-HhcCC------CCCccCCCCCCCcc
Confidence 35789999999999999999986 34432 12348999999863
No 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=81.69 E-value=0.85 Score=31.84 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=32.5
Q ss_pred CceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 3 ~~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
....+|..|+..+.....-+.|.. + |..= .-|.|+.|++.+
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~-~-H~~~-------~~~~C~~C~~~f 47 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHER-I-HCTD-------RPFKCNYCSFDT 47 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHG-G-GCCS-------CSEECSSSSCEE
T ss_pred CCCeECCCCCcccCCHHHHHHHHH-H-cCCC-------CCEeCCCCCCcc
Confidence 446799999999999999999987 3 6431 238999999863
No 68
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=81.32 E-value=2.9 Score=29.45 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
++-+..|.+| ..+...++.+|...+| +++.|++-|++-..+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~G-d~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNN-DLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTT-CSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Confidence 4568899999 2446889999999877 999999999886443
No 69
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=81.28 E-value=0.3 Score=44.11 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020560 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (324)
.+.+..|++|||+++.+..||...|- +++.|++-|+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhc
Confidence 57889999999999999999988875 89999998875
No 70
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=80.37 E-value=0.27 Score=35.10 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=26.0
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
+-+|.+||.|-.+..+--.+.-.-| +.|.+. -.+++||.||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPG-TKFEDL---PDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTT-CCGGGS---CTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CCHhHC---CCCCcCCCCCCC
Confidence 4689999999755433222222122 235554 456999999964
No 71
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=80.10 E-value=0.41 Score=31.85 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=30.3
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
..+|..||..+.....-+.|.. .|.. ..-|.|+.||+.+
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 42 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLR--THTG-------EKPYKCEFCEYAA 42 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHH--HHHC-------CCCEECSSSSCEE
T ss_pred CccCCCCcchhCChHHHHHHHH--HcCC-------CCCcCCCCCcchh
Confidence 4689999999999999999987 3532 1238999999863
No 72
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=80.09 E-value=0.81 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=31.9
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
...+|..|+..+.....-+.|.. .|.. ..-|.|+.|++.|
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~--~h~~-------~~~~~C~~C~~~f 52 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQR--VHTG-------EKPYKCLECGKAF 52 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH--GGGC-------SCCEECSSSCCEE
T ss_pred CCccCCCCCCccCCHHHHHHHHH--hcCC-------CCCeECCCCCccc
Confidence 45789999999999999999987 4542 1348999999863
No 73
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=78.87 E-value=0.76 Score=32.78 Aligned_cols=38 Identities=26% Similarity=0.523 Sum_probs=31.0
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-+|..||+.+.....=+.|.. .|+. .--|.|+.||+.|
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~--~Ht~-------ekp~~C~~C~k~F 42 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRR--AHLG-------YRPRSCPECGKCF 42 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHH--HHHT-------CCCEECTTTCCEE
T ss_pred ccCCCCCCEeCCHHHHHHHHH--HhCC-------CcCeECCCCCCCc
Confidence 589999999999999999986 5743 2348999999864
No 74
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=78.25 E-value=0.74 Score=32.54 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=31.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|..|+..+.....-+.|.. .|.. ..-|.|+.||+.+
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~--~H~~-------~~~~~C~~C~k~f 55 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKT--VHTG-------EKPYRCNICGAQF 55 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHH--HHCC-------CCSEECTTTCCEE
T ss_pred CCeECCCCCceeCCHHHHHHHHH--HcCC-------CCCEECCCCCchh
Confidence 45689999999999999999986 4543 1238999999864
No 75
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=78.13 E-value=0.35 Score=34.50 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=25.6
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
+-+|.+||.|-.+..+--.+.-.-| +.|.+. -.+++||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPG-TKFEDL---PDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSS-CCTTSS---CTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCC-CchHHC---CCCCcCCCCCCc
Confidence 4689999999754332111111122 235554 456999999964
No 76
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=77.11 E-value=0.35 Score=37.69 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=25.9
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
+-+|.+||.|-.+..+--...-.-| +.|.+. -.+++||.||.+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAG-TRWDDI---PDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCTTTS---CTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 6799999999755432111111112 235554 456999999975
No 77
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=76.53 E-value=1.4 Score=32.30 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=12.2
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..|+..+.....-+.|..
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~ 29 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMR 29 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGG
T ss_pred eECCCCCCccCCHHHHHHHHH
Confidence 456666666655555555554
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=76.45 E-value=0.34 Score=34.97 Aligned_cols=43 Identities=19% Similarity=0.439 Sum_probs=25.8
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
+-+|.+||.|-.+..+--.+.-.-| +-|.+. -.+++||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAG-TRWEDI---PADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCGGGS---CTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 4689999999755432211111112 235444 456999999975
No 79
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=76.16 E-value=4.5 Score=32.40 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH----hCC--CCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 020560 115 KELLKELEAMGFPVARATRALHY----SGN--ANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKA 187 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~----Tgn--~~~E~A~~WL~~H~dD~didep~~~~~~~~~e~~k~~lT~EEk~~k~ 187 (324)
...+...++|||+......++.. ||. .+++.-+.=|+...++. ..+.. +.. + ...++++||...++
T Consensus 28 s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~~--~~~~~-~~~-s---~~~~~s~eEqLrrL 99 (104)
T 2kna_A 28 NPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDS--MQDES-SQT-S---LQKEISTEEQLRRL 99 (104)
T ss_dssp CTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSC--CCCCS-SCC-C---CCCCCCHHHHGGGT
T ss_pred CHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhh--ccccc-ccc-c---ccCCCCHHHHHHHH
Confidence 34678899999999999877654 554 57888888888766653 22211 111 1 23467887664444
No 80
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.98 E-value=0.57 Score=35.45 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=31.4
Q ss_pred ceeecccCccccc-chHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLR-SVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~-~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|..||..+. ....=+.|.. .|.. ...-|.|+.||+.|
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~--~h~~------~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHME--VCQK------LQDALKCQHCRKQF 64 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHH--HHHH------HHHHHSCSSSCCCC
T ss_pred CCcCCCCCCCChhhhHHHHHHHHH--HHcC------CCCCEECCCCCCcc
Confidence 3468999999999 8888889986 3432 12459999999874
No 81
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.75 E-value=0.87 Score=32.40 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=32.0
Q ss_pred CceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 3 ~~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
.-..+|..|+..+.....-+.|.. .|..-. ....|.|+.||+.|
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~--~h~~~~----~~~~~~C~~C~k~f 48 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQR--KHAETV----AALRFPCEFCGKRF 48 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHH--HHHHHT----TTCCEECTTTCCEE
T ss_pred CcCeECCCCCCeeCCHHHHHHHHH--HhhccC----CCcccCCCCCCchh
Confidence 446799999999999999888876 343210 12349999999863
No 82
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.99 E-value=1.9 Score=32.89 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=34.4
Q ss_pred eeecccCcccc-cchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCccccccc
Q 020560 5 SLKCGDCGALL-RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (324)
Q Consensus 5 ~L~C~~C~~v~-~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~e~~~a 61 (324)
...|..||..+ .....-+.|.. .| ++ .-|.|+.||+.|........|
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~--~h---~~-----k~~~C~~Cgk~F~~~~~L~~H 81 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHME--NC---KQ-----EMFTCHHCGKQLRSLAGMKYH 81 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHH--HH---CC-----CCCCCSSSCCCCSSHHHHHHH
T ss_pred CcCCCCCCCCcccCHHHHHHHHH--HH---CC-----CCeECCCCCCeeCCHHHHHHH
Confidence 46899999999 89999999987 45 22 248999999976444333333
No 83
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=74.84 E-value=1.3 Score=31.86 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=10.1
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
..|..|+..+.....-+.|..
T Consensus 35 ~~C~~C~~~f~~~~~l~~H~~ 55 (90)
T 1a1h_A 35 FQCRICMRNFSRSDHLTTHIR 55 (90)
T ss_dssp EECTTTCCEESCHHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 345555555544444444443
No 84
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=74.77 E-value=0.79 Score=37.04 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.3
Q ss_pred ecccCcccc---c-chHHHHHHHHHcccCC---CCchhhhhhhcccCCCCC
Q 020560 7 KCGDCGALL---R-SVQEAQEHAELTSHSN---FSESTEAVLNLVCATCGK 50 (324)
Q Consensus 7 ~C~~C~~v~---~-~~~eaq~hae~TgH~~---F~E~~e~v~e~~C~~Cg~ 50 (324)
.|..||.|+ . ++.-|..|.+.|||.- |.-. .....|=.|+.
T Consensus 36 lCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~---~~~vwcY~cd~ 83 (102)
T 2ida_A 36 ICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPP---EGWGWCYVDEV 83 (102)
T ss_dssp EESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSC---SCEEEETTTTE
T ss_pred eeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecC---CCCEEEcCCCc
Confidence 488999997 3 6777999999999983 3221 23367777764
No 85
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=74.76 E-value=2 Score=36.07 Aligned_cols=39 Identities=23% Similarity=0.566 Sum_probs=24.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhh---------hcccCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVL---------NLVCATCGKP 51 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~---------e~~C~~Cg~~ 51 (324)
-+.+|.+||....... -+..+.+..+..+ .+.||.||++
T Consensus 69 ~~~~C~~CG~~~~~~~---------~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKE---------VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGG---------CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEeccc---------ccccccccccccccccccccccCCcCccccCC
Confidence 4689999999876521 1223333322211 4789999986
No 86
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=74.71 E-value=3.9 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=26.4
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHh---C-CCCHHHHH
Q 020560 113 VDKELLKELEAMGFPVARATRALHYS---G-NANVEAAV 147 (324)
Q Consensus 113 vd~~~l~~L~~MGF~~~~a~kAL~~T---g-n~~~E~A~ 147 (324)
+..++++.|+.+||+...|.+|+... + +.+++..|
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lI 54 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 54 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 44689999999999999999998754 1 34555443
No 87
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.53 E-value=1.6 Score=30.93 Aligned_cols=41 Identities=24% Similarity=0.592 Sum_probs=32.2
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~ 53 (324)
-..+|..|+..+.....-+.|.. .|.. ..-|.|+.|++.+.
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRR--THTG-------EKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHT--TTCC-------SCSEECSSSCCEES
T ss_pred CCEECCCCCcccCCHHHHHHHHH--HcCC-------CcCeeCCCCCCccC
Confidence 35689999999999999999986 4643 12489999998643
No 88
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=74.36 E-value=2.6 Score=37.80 Aligned_cols=36 Identities=36% Similarity=0.442 Sum_probs=30.6
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020560 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (324)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (324)
.+|..|-+ -|.+.--|.+||..++| |++.|++||-.
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~G-D~ekAie~LR~ 41 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 45667764 48999999999999987 99999999964
No 89
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.98 E-value=1.5 Score=34.48 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=34.0
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~ 54 (324)
-...|..||..+.....=+.|.. +.|..+.+. .-|.|+.||+.|.+
T Consensus 17 kpy~C~~Cgk~F~~~~~L~~H~r-~~H~~~~~e----kpf~C~~Cgk~F~~ 62 (102)
T 2ghf_A 17 GGYECKYCTFQTPDLNMFTFHVD-SEHPNVVLN----SSYVCVECNFLTKR 62 (102)
T ss_dssp SSEECSSCSCEESCHHHHHHHHH-HHCSSCCCS----CCEEETTTTEEESS
T ss_pred cCcCCCCCCCccCCHHHHHHHHH-hhCCCCCCC----CCcCCCCCCcccCC
Confidence 35789999999999888889986 457553221 23999999986433
No 90
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=73.96 E-value=0.51 Score=37.26 Aligned_cols=43 Identities=16% Similarity=0.426 Sum_probs=25.4
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
.-+|.+||+|-.+..+--.+.-.-| +-|.+. -.+++||.||..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPG-TRFEDI---PDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSC-CCGGGC---CTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCC-CChhHC---CCCCCCCCCCCC
Confidence 5789999999755432111111112 235444 456999999965
No 91
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=73.81 E-value=2.5 Score=39.88 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=33.2
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020560 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (324)
Q Consensus 113 vd~~~l~~L~~-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (324)
++..+|..|-+ -|.+.--|++||..++| |++.|++||-.
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34567777865 48999999999999987 99999999986
No 92
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=73.79 E-value=0.59 Score=33.70 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=26.2
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
+-+|.+||.|-....+--.+.-. --+.|.+. -.+++||.||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~-pGt~fe~l---P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVN-PGTDFKDI---PDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBC-TTCCGGGS---CTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcC-CCCChhHC---CCCCcCcCCCCc
Confidence 45899999998654322111111 12355554 566999999964
No 93
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=73.14 E-value=0.46 Score=35.91 Aligned_cols=43 Identities=16% Similarity=0.464 Sum_probs=25.9
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
+-+|.+||.|-.+..+--.+.-.-| +-|.+. -.+++||.||.+
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pG-T~f~~l---Pddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPG-TPFVDL---SDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSS-CCGGGS---CTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCC-CchhhC---CCCCcCCCCCCC
Confidence 6799999999754432211111122 235544 456999999964
No 94
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=73.09 E-value=2.4 Score=38.16 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=25.3
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 020560 113 VDKELLKELEAMGFPVARATRALHYSGN 140 (324)
Q Consensus 113 vd~~~l~~L~~MGF~~~~a~kAL~~Tgn 140 (324)
.+.+.++.|++|||+.+.+..||...|.
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~ 195 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGV 195 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 5789999999999999999999988764
No 95
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=72.96 E-value=1.6 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=31.4
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
.-.|..||..+.....=..|.. .|.. + --|.|+.||+.|
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C~k~F 66 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLR--LLHA--A-----QVFPCKYCPATF 66 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHH--TTSC--S-----SSEECTTSSCEE
T ss_pred CEECCCCCCCcCcHHHHhhhhh--hccC--C-----CccCCCCCCCEe
Confidence 3579999999999999999987 4642 1 249999999864
No 96
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=71.75 E-value=1.5 Score=30.96 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=10.4
Q ss_pred ecccCcccccchHHHHHHHH
Q 020560 7 KCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 7 ~C~~C~~v~~~~~eaq~hae 26 (324)
+|..||..+.....-+.|..
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~ 22 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLL 22 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHH
T ss_pred cCCCCcccccCchhHHHHHH
Confidence 45555555555555555544
No 97
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=71.51 E-value=2.6 Score=29.99 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=31.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCC-CCchhhhhhhcccCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN-FSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~-F~E~~e~v~e~~C~~Cg~~ 51 (324)
...+|..|+..+.....-+.|.. +-|.. +.+ .-|.|+.|++.
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~-----~~~~C~~C~~~ 56 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVP-----AAFVCSKCGKT 56 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHH-HTTCSSCCC-----CCEECSSSCCE
T ss_pred CCCcCCCCCCccCCHHHHHHHHH-HhcCCcCCC-----cceECCCCCCh
Confidence 45789999999999999999987 33321 111 23899999986
No 98
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=71.30 E-value=1.8 Score=33.68 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=29.7
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
..+|..||..+.....-+.|.. .| + -.|.|+.||+.|
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~--~H----~-----~~~~C~~C~k~f 110 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIR--YT----E-----HTKVCPVCKKEF 110 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHH--HT----C-----CCCBCTTTCCBC
T ss_pred CeECCCCCcccCCHhHHHHHHH--HC----C-----CCCCCCCCCccc
Confidence 3689999999999988899987 36 1 238999999864
No 99
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=70.94 E-value=4.9 Score=32.31 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.1
Q ss_pred cccCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 020560 111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV 150 (324)
Q Consensus 111 ~~vd~~~l~~L~-~MGF~~~~a~kAL~~Tgn~~~E~A~~WL 150 (324)
..++++.++.++ .+|.|+..|.+||..++| ++-.|+-||
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~g-Div~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGG-DLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 568888888887 489999999999999987 888888765
No 100
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=70.62 E-value=4.6 Score=25.93 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=30.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~ 50 (324)
-..+|..|+..+.....-+.|.. .|.. ..-|.|+.||+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C~k 48 (48)
T 2epr_A 11 KQVACEICGKIFRDVYHLNRHKL--SHSG-------EKPYSSGPSSG 48 (48)
T ss_dssp CSEEETTTTEEESSHHHHHHHGG--GSCS-------CCCCCSCCCCC
T ss_pred cCeeCCCCCcccCCHHHHHHHHH--hcCC-------CCCccCCCCCC
Confidence 35789999999999999999976 5653 13489999986
No 101
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=70.02 E-value=4 Score=25.67 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=29.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG 49 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg 49 (324)
-..+|..|+..+.....-+.|.. .|.. ...|.|+.||
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~--~H~~-------~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVR--SHDG-------SVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHH--HHSC-------CCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHH--HccC-------CCCCCCcCCC
Confidence 35689999999999999999976 4653 2348999997
No 102
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.59 E-value=2.5 Score=29.23 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=28.6
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccC-CCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA-TCGKPC 52 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~-~Cg~~~ 52 (324)
..+|..||..+. ...-+.|...+| + .-|.|+ .||+.+
T Consensus 10 ~~~C~~C~k~f~-~~~L~~H~~~~~-----~-----~p~~C~~~C~k~f 47 (66)
T 2eod_A 10 TQPCTYCTKEFV-FDTIQSHQYQCP-----R-----LPVACPNQCGVGT 47 (66)
T ss_dssp EEECSSSCCEEE-HHHHHHHHHHCS-----S-----SEEECTTCCSCCE
T ss_pred CeeccccCCccC-HHHHHHHHHHcC-----C-----cCccCCcccCccc
Confidence 468999999999 888889987322 1 248999 999863
No 103
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=69.18 E-value=2.6 Score=31.43 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=27.9
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~ 54 (324)
...|..|+..+.....-+.|.. .|.. ...|.|+.|++.+.+
T Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 17 EFICKFCGRHFTKSYNLLIHER--THTD-------ERPYTCDICHKAFRR 57 (106)
T ss_dssp CCBCSSSCCBCSSHHHHHHHHH--HHCC-------SCCCBCSSSCCBCSC
T ss_pred CeECCCCCCccCCHHHHHHHHH--HcCC-------CCCcCCCCccchhCC
Confidence 4678889888888888888876 3432 123777777775433
No 104
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=68.40 E-value=2.8 Score=33.50 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=35.3
Q ss_pred CceeecccCcccccchHHHHHHHHHcccCCCCchh-hhhhhcccCCCCCCCCCcccc
Q 020560 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSKTET 58 (324)
Q Consensus 3 ~~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~-e~v~e~~C~~Cg~~~~~~~e~ 58 (324)
.+...|..||..+.....-+.|.. +-|..=.... ....-|.|+.|++.+.+....
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~-~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l 78 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHH-TTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHH
T ss_pred hcccccccCCcccCCHHHHHHHHH-hhcCCCcccCCccccccCCCCcccccCCHHHH
Confidence 456789999999999999999988 4454321110 000116888888865444333
No 105
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=68.07 E-value=2.1 Score=31.23 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=33.2
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCc
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~ 55 (324)
....|..|+..+.....-+.|.. .|..-. ...|.|+.|++.+.+.
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~~-----~~~~~C~~C~~~f~~~ 78 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVR--SHDGSV-----GKPYICQSCGKGFSRP 78 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHH--HHCCCC-----CSSBCCSSSCCCBSSH
T ss_pred CCCcCCCCCCccCCHHHHHHHHH--HhcCCC-----CCceECCCccchhCCH
Confidence 35789999999999999999987 343211 1348999999875433
No 106
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=68.06 E-value=3 Score=31.03 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=35.4
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCccccccc
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~e~~~a 61 (324)
...+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+.+......|
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~L~~H 92 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRY--IHSK-------EKPFKCQECGKGFCQSRTLAVH 92 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGG--GSCC-------CCTTSCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCccchhCCHHHHHHHHH--HhCC-------CCCeECCCcCCcccCHHHHHHH
Confidence 34789999999999999999976 4542 1248999999975444433333
No 107
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=66.93 E-value=1.4 Score=32.07 Aligned_cols=42 Identities=17% Similarity=0.451 Sum_probs=31.9
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCcc
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~ 56 (324)
.+|..||..+.....-+.|.. .|.. ..-|.|+.||+.+.+..
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C~k~f~~~~ 45 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIR--THTG-------EKPFACDICGRKFARSD 45 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHH--HHHC-------CCCEECTTTCCEESSHH
T ss_pred CcCCCCCCccCCHHHHHHHHH--HcCC-------CCCccCCCCCCccCCHH
Confidence 589999999999999999987 3532 12489999998654433
No 108
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.08 E-value=3.8 Score=30.78 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=31.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCcc
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~ 56 (324)
...+|..|+..+.....-+.|.. + |. ..|.|+.|++.+.+..
T Consensus 15 ~~~~C~~C~~~f~~~~~l~~H~~-~-H~---------~~~~C~~C~~~f~~~~ 56 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSLLEQGSHER-L-CR---------NAAVCPYCSLRFFSPE 56 (107)
T ss_dssp CCCBCTTTCCBCSSHHHHHHHHH-H-HH---------HSBCCTTTCCCBSSHH
T ss_pred cCeECCCCCCccCCHHHHHHHHH-H-CC---------CCccCCCCCCccCCHH
Confidence 34689999999999888888987 2 51 2488888888754433
No 109
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.59 E-value=2.2 Score=31.12 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=32.8
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCcc
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~ 56 (324)
..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+.+..
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~ 78 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLR--IHSD-------ERPFKCQICPYASRNSS 78 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHH--HSCC-------CCCEECSSSSCEESSHH
T ss_pred CEeCCCCCCccCCHHHHHHHHH--HhCC-------CCCccCCCCCCccCCHH
Confidence 4789999999999999999987 3532 12489999998654433
No 110
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.56 E-value=2 Score=32.35 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=24.5
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCccccccc
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~e~~~a 61 (324)
...| .|+..+.....-+.|.. .|..- .-|.|+.|++.+.+......|
T Consensus 10 ~~~C-~C~~~f~~~~~l~~H~~--~h~~~-------~~~~C~~C~~~f~~~~~l~~H 56 (110)
T 2csh_A 10 LYPC-QCGKSFTHKSQRDRHMS--MHLGL-------RPYGCGVCGKKFKMKHHLVGH 56 (110)
T ss_dssp CEEC-TTSCEESSHHHHHHHHH--HHSCC-------CSEECTTTSCEESSSHHHHHH
T ss_pred CEec-cCCCccCCHHHHHHHHH--HcCCC-------cCccCCCCCcccCCHHHHHHH
Confidence 3567 67777766666666665 23221 125555555554444444333
No 111
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=64.40 E-value=16 Score=26.83 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHH-HHHHHHHHHHH
Q 020560 223 AKRIEEENERKRILALRKAEKEEE-KRAREKIRQKL 257 (324)
Q Consensus 223 ~k~~~ee~e~k~~~e~rkrEK~Ee-~~ARerir~qI 257 (324)
.+..++-.+..+.++.+|++|-.. ...|+++|+.|
T Consensus 11 ~kke~E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~I 46 (63)
T 3rk3_E 11 AKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777666443 35688999999
No 112
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=64.29 E-value=3.2 Score=31.46 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=32.9
Q ss_pred CceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCccccccc
Q 020560 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (324)
Q Consensus 3 ~~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~e~~~a 61 (324)
.-..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+.+......|
T Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~l~~H 54 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSKYYLKVHNR--KHTG-------EKPFECPKCGKCYFRKENLLEH 54 (124)
T ss_dssp CSSCCCTTTCCCCSSHHHHHHHHH--HHSS-------CCSCBCTTTCCBCSSHHHHHHH
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHH--hCCC-------CCCeECCCCCchhcCHHHHHHH
Confidence 345789999999988888888876 3432 1237888888765444433333
No 113
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=60.36 E-value=4.3 Score=30.73 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=12.1
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..|+..+.....-+.|..
T Consensus 36 ~~C~~C~~~f~~~~~l~~H~~ 56 (124)
T 2dlq_A 36 FECPKCGKCYFRKENLLEHEA 56 (124)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH
T ss_pred eECCCCCchhcCHHHHHHHHh
Confidence 456666666655555555554
No 114
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.05 E-value=4.4 Score=30.42 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=31.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
...+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+
T Consensus 36 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 75 (110)
T 2csh_A 36 RPYGCGVCGKKFKMKHHLVGHMK--IHTG-------IKPYECNICAKRF 75 (110)
T ss_dssp CSEECTTTSCEESSSHHHHHHHT--TTCC-------CCCEECSSSCCEE
T ss_pred cCccCCCCCcccCCHHHHHHHHH--HcCC-------CCCeeCCCCcchh
Confidence 34789999999999999999976 4542 1348999999864
No 115
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=59.57 E-value=3.2 Score=31.20 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=31.5
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCcc
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~ 56 (324)
.+|..|+..+.....-+.|. + |.. ..-|.|+.|++.|....
T Consensus 43 ~~C~~C~~~f~~~~~l~~H~--~-H~~-------~~~~~C~~C~~~f~~~~ 83 (107)
T 1wjp_A 43 AVCPYCSLRFFSPELKQEHE--S-KCE-------YKKLTCLECMRTFKSSF 83 (107)
T ss_dssp BCCTTTCCCBSSHHHHHHHH--H-HCS-------TGGGEEGGGTEECSSHH
T ss_pred ccCCCCCCccCCHHHHHHHH--H-cCC-------CCCccCccccchhCCHH
Confidence 58999999999999999997 3 652 23489999998654333
No 116
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=59.10 E-value=1.3 Score=34.77 Aligned_cols=43 Identities=30% Similarity=0.498 Sum_probs=23.4
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCch-------hhhhh--hcccCCCCCC
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSES-------TEAVL--NLVCATCGKP 51 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~-------~e~v~--e~~C~~Cg~~ 51 (324)
-+|..||.++.-.+=--+.. .-.||.|. -.... -|+||.||.-
T Consensus 9 ~~~PlCG~~L~W~eLIeQML---~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE 60 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEML---IIENFEEIVKDRERFLAQVEEFVFKCPVCGEE 60 (95)
T ss_dssp EECSSSCCEECHHHHHHHST---TCSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred ccCCcCCCccCHHHHHHHHH---hhccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence 47999999984332211111 22344443 01222 2899999974
No 117
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.05 E-value=6.2 Score=28.61 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=31.9
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchh-hhhhhcccCCCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRS 54 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~-e~v~e~~C~~Cg~~~~~ 54 (324)
.-.|..|+..+.....-..|.. +-|..-.... -.-.-|.|+.||+.+.+
T Consensus 25 ~~~C~~C~k~f~~~~~L~~H~~-~~H~~~~~~~~~~c~~~~C~~C~k~f~~ 74 (95)
T 2ej4_A 25 SRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKA 74 (95)
T ss_dssp SSSCCCCCCCCSSHHHHHHHHH-HTTTCCTTCSCCCCCCTTCSSTTCCCSS
T ss_pred CCcccccccccCCHHHHHHHHH-HhccCCCCCCccceeccCCCCCCcccCC
Confidence 3469999999999999999987 3365321100 00001799999987533
No 118
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=57.49 E-value=2 Score=35.28 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=42.9
Q ss_pred eeecccCcccccchHHHHHHHHHcccCC-------------------CC-----chhhhhhhcccCCCCCCCCCcccccc
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSN-------------------FS-----ESTEAVLNLVCATCGKPCRSKTETDL 60 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~-------------------F~-----E~~e~v~e~~C~~Cg~~~~~~~e~~~ 60 (324)
.+.|..|+..+.+...++.|-.-.-|.. |. ........|+|..|+..|.|...+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~ 111 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAES 111 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHH
Confidence 3689999999999999998885332311 00 01122446899999988888777777
Q ss_pred ccccccc
Q 020560 61 HRKRTGH 67 (324)
Q Consensus 61 a~K~t~f 67 (324)
|+..-.|
T Consensus 112 H~~gk~H 118 (127)
T 1zu1_A 112 HYIGKTH 118 (127)
T ss_dssp HHTSHHH
T ss_pred HHCCHHH
Confidence 7665444
No 119
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=56.71 E-value=4.1 Score=32.90 Aligned_cols=27 Identities=33% Similarity=0.871 Sum_probs=19.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhc-ccCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNL-VCATCGKP 51 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~-~C~~Cg~~ 51 (324)
...+|.+||...... ...+ .||.||++
T Consensus 72 ~~~~C~~CG~~~e~~---------------------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN---------------------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC---------------------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC---------------------CCCCCcCccccCC
Confidence 357899999876541 1246 89999986
No 120
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=56.24 E-value=3.6 Score=33.32 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=31.6
Q ss_pred ecccCcccccc---hHHHHHHHHHcccCCCCchhhhhhhcccCCCCC
Q 020560 7 KCGDCGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (324)
Q Consensus 7 ~C~~C~~v~~~---~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~ 50 (324)
-|..||.|+=| +.-|..|.+.|||..+-..... ...|=.|+.
T Consensus 38 ~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~--~vwCy~cd~ 82 (109)
T 3c5k_A 38 VCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDL--SAWCYYCQA 82 (109)
T ss_dssp EETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTC--CEEETTTTE
T ss_pred eeeecCccccCCCcChHHHHHhcccCCCEEEECCCC--CEEECCCCC
Confidence 48889999844 6679999999999988665221 367878874
No 121
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=55.72 E-value=3.7 Score=28.77 Aligned_cols=39 Identities=23% Similarity=0.525 Sum_probs=30.7
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
..+|..|+..+.....-+.|.. .|.. ...|.|+.||+.+
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 67 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTF--IHTG-------EKPHKCQVCGKAF 67 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHH--HHHT-------CCCEECTTTSCEE
T ss_pred CeeCCcCChhhCCHHHHHHHHH--HhcC-------CCCCcCCCcchhh
Confidence 4789999999999999999986 3422 1348999999864
No 122
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=53.58 E-value=6.3 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=30.4
Q ss_pred ceeecc--cCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~--~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-...|. .||..+.....-+.|.. .|.. ...|.|+.||+.+
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 59 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIR--IHTG-------QKPFQCRICMRNF 59 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHH--HHHC-------CCCEECTTTCCEE
T ss_pred CccCCcCCCCCCccCCHHHHHHHHH--hhCC-------CCCeECCCCCchh
Confidence 347897 69999999999999976 3532 1238999999864
No 123
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=53.44 E-value=7.4 Score=29.61 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=31.3
Q ss_pred CCceeecc--cCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCcc
Q 020560 2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (324)
Q Consensus 2 ~~~~L~C~--~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~ 56 (324)
..-..+|. .||..+.....-+.|.. .| ++ ..|.|+.||+.+.+..
T Consensus 2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h---~~-----~~~~C~~C~~~f~~~~ 48 (124)
T 1ubd_C 2 EPRTIACPHKGCTKMFRDNSAMRKHLH--TH---GP-----RVHVCAECGKAFVESS 48 (124)
T ss_dssp ---CEECCSTTCCCEESSHHHHHHHHG--GG---SC-----CCEECTTTCCEESSHH
T ss_pred CCCcccCCCCCCcCccCCHHHHHHHHH--Hc---CC-----CCeECCCCCchhCCHH
Confidence 34567898 89999999999999986 45 11 2488999998644433
No 124
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=52.64 E-value=3.3 Score=33.61 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=25.4
Q ss_pred eecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-+|..||..+.....=+.|.. .|+. .-.|.|+.||+.|
T Consensus 23 y~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C~k~F 60 (133)
T 2lt7_A 23 YICIVCKRSYVCLTSLRRHFN--IHSW-------EKKYPCRYCEKVF 60 (133)
T ss_dssp EEETTTCCEESCHHHHHHHHH--HHHC-------CSCEECSSSSCEE
T ss_pred eECCCCCCCcCCHHHHHHHHH--HcCC-------CCCeeCCccCeec
Confidence 478888888888888888865 4642 1236677776653
No 125
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=52.09 E-value=12 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=24.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|..||..+.....-+ ..|.. ...|.|+.||+.+
T Consensus 13 k~~~C~~C~k~F~~~~~l~-----~~H~~-------~k~~~C~~C~k~f 49 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ-----LFDPM-------TGTFRCTFCHTEV 49 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH-----HEETT-------TTEEBCSSSCCBC
T ss_pred CCccCCCCCchhccHHHhH-----hhcCC-------CCCEECCCCCCcc
Confidence 3568999999986543222 34532 1348999999864
No 126
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=50.56 E-value=5.2 Score=38.69 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=33.1
Q ss_pred eecccCcccccc-hHHHHHHHHHcccCCCCchhhhhhhcccCCCCC
Q 020560 6 LKCGDCGALLRS-VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (324)
Q Consensus 6 L~C~~C~~v~~~-~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~ 50 (324)
--|..||.++-| ..-|..|...|||..|-... ....+|-.|+.
T Consensus 63 ~~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~--~~~~~c~~~~~ 106 (476)
T 3mhs_A 63 FMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSN--NGLLFCFKCED 106 (476)
T ss_dssp EEESSSSCEEETTTTHHHHHHHHHCCCEEEETT--TCCEEETTTTE
T ss_pred eEeCCCCCCccCCchHHHHHhcccCCcEEEECC--CCcEEeCCCCC
Confidence 358889988865 46699999999998886553 23579999985
No 127
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=48.79 E-value=21 Score=22.14 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~c 46 (46)
T 2ema_A 11 KRYKCNECGKVFSRNSQLSQHQK--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHT--GGGCC-------CCCSSSCC
T ss_pred cCcCCCCCcchhCCHHHHHHHHH--hcCCC-------CCCCCCCC
Confidence 45689999999998888888876 46431 23788776
No 128
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=48.57 E-value=19 Score=22.48 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=26.0
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2el6_A 12 PYKCSQCEKSFSGKLRLLVHQR--MHTR-------EKPSGPSSG 46 (46)
T ss_dssp SEECSSSSCEESSHHHHHHHHG--GGCC-------SSCCSCCCC
T ss_pred CeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 4689999999988888888865 4653 123788776
No 129
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=48.20 E-value=20 Score=25.22 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHcHHHH-HHHHHHHHHHHH
Q 020560 227 EEENERKRILALRKAEKEEE-KRAREKIRQKLE 258 (324)
Q Consensus 227 ~ee~e~k~~~e~rkrEK~Ee-~~ARerir~qIe 258 (324)
.+-.+..+.++.+|++|-.. ...|+++|+.|.
T Consensus 12 ~E~~eAlreaEe~Rk~Kh~kmE~eRE~mRq~IR 44 (49)
T 1kil_E 12 EERQEALRQAEEERKAKYAKMEAEREVMRQGIR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666655333 356888899883
No 130
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.97 E-value=21 Score=22.04 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=25.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLIVHQR--IHTGE-------NPSGPSSG 46 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHT--TTTTS-------CCSCCCCC
T ss_pred CCeeCCCCCchhCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34678889998888888888865 46431 23777776
No 131
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=46.88 E-value=14 Score=32.16 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=30.0
Q ss_pred HHHHHHhCC-CCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020560 117 LLKELEAMG-FPVARATRALHYSGNANVEAAVNWVVE 152 (324)
Q Consensus 117 ~l~~L~~MG-F~~~~a~kAL~~Tgn~~~E~A~~WL~~ 152 (324)
-+..|++.| |....|..||+.+|+ +++.|+.=|-.
T Consensus 105 K~~eL~s~G~~~~~~~~~aL~~~~G-dv~~Al~eLqr 140 (162)
T 4dbg_B 105 KVQELQSLGFGPEEGSLQALFQHGG-DVSRALTELQR 140 (162)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 378899999 778999999999987 89999986643
No 132
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=46.77 E-value=14 Score=27.74 Aligned_cols=8 Identities=38% Similarity=1.120 Sum_probs=4.8
Q ss_pred ccCCCCCC
Q 020560 44 VCATCGKP 51 (324)
Q Consensus 44 ~C~~Cg~~ 51 (324)
.|+.||..
T Consensus 47 rCp~CG~R 54 (70)
T 1twf_L 47 RCKDCGHR 54 (70)
T ss_dssp CCSSSCCC
T ss_pred cCCCCCce
Confidence 56666653
No 133
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.80 E-value=24 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=26.7
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLISHQR--THAGE-------KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH--HHTTS-------CCSCSSCC
T ss_pred cCcCCCCCCcccCcHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 45789999999998888888876 36531 23788876
No 134
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.57 E-value=6.6 Score=21.36 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=8.1
Q ss_pred cccCCCCCCC
Q 020560 43 LVCATCGKPC 52 (324)
Q Consensus 43 ~~C~~Cg~~~ 52 (324)
|.|+.||+.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 7899999864
No 135
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=51.31 E-value=4.4 Score=22.07 Aligned_cols=10 Identities=50% Similarity=1.142 Sum_probs=7.6
Q ss_pred cccCCCCCCC
Q 020560 43 LVCATCGKPC 52 (324)
Q Consensus 43 ~~C~~Cg~~~ 52 (324)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 6788888764
No 136
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.32 E-value=29 Score=21.45 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2eml_A 11 KPYECSVCGKAFSHRQSLSVHQR--IHSGK-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHG--GGSSC-------CCSCSSCC
T ss_pred CCeeCCCcCCccCCHHHHHHHHH--HhcCC-------CCCCCCCC
Confidence 34689999999988888888876 46431 23788776
No 137
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.28 E-value=28 Score=21.50 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=26.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~c 46 (46)
T 2ep2_A 11 KPYECSICGKSFTKKSQLHVHQQ--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--TTSSC-------CSCCSCCC
T ss_pred cCcCCCCCCcccCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999998888888876 56431 23788776
No 138
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=45.14 E-value=7.2 Score=29.27 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=12.3
Q ss_pred eecc--cCcccccchHHHHHHHH
Q 020560 6 LKCG--DCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~--~C~~v~~~~~eaq~hae 26 (324)
.+|. .||..+.....-+.|..
T Consensus 37 ~~C~~~~C~~~f~~~~~l~~H~~ 59 (119)
T 2jp9_A 37 YQCDFKDCERRFSRSDQLKRHQR 59 (119)
T ss_dssp EECCSTTCCCEESSHHHHHHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHH
Confidence 4565 46666666555555554
No 139
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.01 E-value=20 Score=24.82 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=29.6
Q ss_pred eeeccc--CcccccchHHHHHHHHHcccCCCCchhhhhhhcccCC--CCCCCCCccccccccc
Q 020560 5 SLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHRK 63 (324)
Q Consensus 5 ~L~C~~--C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~--Cg~~~~~~~e~~~a~K 63 (324)
...|.. |+..+.....-+.|.. +.|.. ...|.|+. ||+.+.+......|.+
T Consensus 7 ~~~C~~~~C~~~f~~~~~L~~H~~-~~H~~-------~~~~~C~~~~C~k~f~~~~~L~~H~~ 61 (79)
T 2dlk_A 7 GMPCDFPGCGRIFSNRQYLNHHKK-YQHIH-------QKSFSCPEPACGKSFNFKKHLKEHMK 61 (79)
T ss_dssp SEECSSTTTCCEESSHHHHHHHHH-HGGGS-------CCCEECSCTTTCCEESSHHHHHHHHH
T ss_pred CccCCCCCCcCccCCHHHHHHHHH-HHhCC-------CCCeECCCCCCcCccCCHHHHHHHHH
Confidence 345554 8888877777777776 33432 12266766 7766655544444443
No 140
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=44.92 E-value=6.7 Score=27.47 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=11.8
Q ss_pred ec--ccCcccccchHHHHHHHH
Q 020560 7 KC--GDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 7 ~C--~~C~~v~~~~~eaq~hae 26 (324)
+| ..||..+.....-+.|..
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~ 24 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQF 24 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHH
Confidence 45 556666666665555554
No 141
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.71 E-value=24 Score=21.82 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMHQR--THVDD-------KHSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHH--HCCSC-------CCSCCCCC
T ss_pred CCeeCCCCCCccCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999988888888876 46431 23778776
No 142
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.46 E-value=28 Score=21.57 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.7
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..|+..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYGSSLTVHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTSSS-------CCCSCCCC
T ss_pred CCeeCcccCcccCChHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999999888888865 56532 23778776
No 143
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=44.17 E-value=13 Score=26.39 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=11.9
Q ss_pred eeccc--CcccccchHHHHHHHH
Q 020560 6 LKCGD--CGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~--C~~v~~~~~eaq~hae 26 (324)
..|.. ||..+.....-+.|..
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~ 28 (89)
T 2wbs_A 6 HTCDYAGCGKTYTKSSHLKAHLR 28 (89)
T ss_dssp EECCSTTTCCEESSHHHHHHHHT
T ss_pred eeCCCCCCCCcCCCHHHHHHHHH
Confidence 45555 6666655555555554
No 144
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=44.12 E-value=8 Score=30.43 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=31.9
Q ss_pred eeccc--Ccccccc---hHHHHHHHHHcccCCCCchhhhhhhcccCCCCC
Q 020560 6 LKCGD--CGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (324)
Q Consensus 6 L~C~~--C~~v~~~---~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~ 50 (324)
--|.. ||.|+=| ..-|..|.+.|||..+-.... ....|=.|+.
T Consensus 39 w~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~--~~vwCy~cdd 86 (97)
T 2uzg_A 39 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTT--LRVWCYACSK 86 (97)
T ss_dssp EEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTT--TEEEETTTTE
T ss_pred eeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCC--CCEEECCCCc
Confidence 46888 8888743 466999999999998876522 2578888864
No 145
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.10 E-value=1.5e+02 Score=27.70 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNAN----VEAAVNWVVE 152 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~----~E~A~~WL~~ 152 (324)
-+.+++...|..+|||-...+.+|...|+.. +=+|+.||.+
T Consensus 68 k~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~Lg~L~WLve 112 (315)
T 2ve7_A 68 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLID 112 (315)
T ss_dssp CHHHHHHHHHHHTTCSSCCCHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCceeCHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence 4667889999999999998888898888743 7889999963
No 146
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=43.97 E-value=6.4 Score=31.83 Aligned_cols=41 Identities=20% Similarity=0.440 Sum_probs=29.2
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~ 54 (324)
..+|..||..+.....=..|.. .|+. ..-|.|+.||+.|.+
T Consensus 50 ~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 50 KYPCRYCEKVFPLAEYRTKHEI--HHTG-------ERRYQCLACGKSFIN 90 (133)
T ss_dssp CEECSSSSCEESSHHHHHHHHH--HHHT-------CCCEEESSSCCEESS
T ss_pred CeeCCccCeecccccchhhhcc--ccCC-------CccccCCCCCCCcCC
Confidence 4579999999988888888865 4642 123788888886433
No 147
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=43.70 E-value=26 Score=21.62 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.8
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2el4_A 11 KPYGCSQCAKTFSLKSQLIVHQR--SHTGV-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHGG--GSSSC-------CCSCCTTC
T ss_pred CceECCCCCchhCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999988888888865 46431 23778776
No 148
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.43 E-value=25 Score=21.68 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=26.8
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2eoe_A 11 KPYKCNECGKVFTQNSHLANHQR--IHTG-------VKPSGPSSG 46 (46)
T ss_dssp CSSEETTTTEECSSHHHHHHHHG--GGSC-------CCSCSSCCC
T ss_pred CCeECCCcChhhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 34689999999999888888975 5643 123788877
No 149
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.37 E-value=27 Score=21.61 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=26.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~c 46 (46)
T 2ytk_A 11 KPYKCNECGKVFTQNSHLTNHWR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHSS-------SSCSSCCCC
T ss_pred CCEeCCcCCCccCCHHHHHHHHH--HHCC-------CCCCCCCCC
Confidence 34689999999998888888876 4642 123788876
No 150
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=49.33 E-value=5 Score=22.32 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=7.9
Q ss_pred cccCCCCCCC
Q 020560 43 LVCATCGKPC 52 (324)
Q Consensus 43 ~~C~~Cg~~~ 52 (324)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 7889998864
No 151
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.30 E-value=29 Score=21.39 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=26.4
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRIHQR--VHMGE-------KCSGPSSG 46 (46)
T ss_dssp SSEECTTTCCEESSHHHHHHHHT--TTCCS-------CSSCCSCC
T ss_pred CCeECCCcCcccCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999988888888875 56531 23788877
No 152
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=43.26 E-value=6.1 Score=21.71 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=7.7
Q ss_pred cccCCCCCCC
Q 020560 43 LVCATCGKPC 52 (324)
Q Consensus 43 ~~C~~Cg~~~ 52 (324)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 6788888764
No 153
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=43.15 E-value=7.5 Score=32.36 Aligned_cols=44 Identities=16% Similarity=-0.003 Sum_probs=30.6
Q ss_pred ecccCcccc---c------chHHHHHHHHHcccCCCCchhh---hhhhcccCCCCC
Q 020560 7 KCGDCGALL---R------SVQEAQEHAELTSHSNFSESTE---AVLNLVCATCGK 50 (324)
Q Consensus 7 ~C~~C~~v~---~------~~~eaq~hae~TgH~~F~E~~e---~v~e~~C~~Cg~ 50 (324)
-|..||.|+ + ++.-|..|...|||..+-.... ..-..+|=.|+.
T Consensus 48 lCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~ 103 (129)
T 2g45_A 48 LNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDD 103 (129)
T ss_dssp EETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTE
T ss_pred EeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCC
Confidence 577788875 1 3778999999999987764311 114568888864
No 154
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=43.15 E-value=17 Score=26.34 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=12.3
Q ss_pred eeccc--CcccccchHHHHHHHH
Q 020560 6 LKCGD--CGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~--C~~v~~~~~eaq~hae 26 (324)
..|.. |+..+.....-+.|..
T Consensus 16 ~~C~~~~C~~~f~~~~~l~~H~~ 38 (100)
T 2ebt_A 16 HYCDYPGCTKVYTKSSHLKAHLR 38 (100)
T ss_dssp EECCSSSCCCEESCHHHHHHHHH
T ss_pred eEcCCCCCCCcccCHHHHHHHHH
Confidence 45554 6666666666666654
No 155
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=43.12 E-value=25 Score=21.80 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=23.8
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2em0_A 12 TWKCRECDMCFSQASSLRLHQN--VHVGE-------KPSGPSSG 46 (46)
T ss_dssp CCCCSSSCCCCSSHHHHHHHGG--GGSSS-------SCSCSSCC
T ss_pred CeECCCCCcccCCHHHHHHHHH--HcCCC-------CCcCCCCC
Confidence 4578888888888888788865 36431 23677766
No 156
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=42.88 E-value=8.5 Score=31.75 Aligned_cols=21 Identities=19% Similarity=0.608 Sum_probs=12.9
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
..|..||..+.....-+.|..
T Consensus 106 ~~C~~C~~~f~~~~~l~~H~~ 126 (190)
T 2i13_A 106 YACPECGKSFSQLAHLRAHQR 126 (190)
T ss_dssp EECTTTCCEESSHHHHHHHHH
T ss_pred CcCCCCCCccCCHHHHHHHHH
Confidence 456666666666666666654
No 157
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.66 E-value=31 Score=21.38 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHLNQHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTSCS-------CCSSCCCC
T ss_pred CCeECCcCCCccCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999998888888875 46421 23788776
No 158
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=42.13 E-value=26 Score=21.75 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=25.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2emk_A 11 KPYECKECGKAFSQTTHLIQHQR--VHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHHHH--HHSSC-------CCSSCCCC
T ss_pred CceECCCCCchhCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34678889988888888888876 46431 23777776
No 159
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=48.21 E-value=5.3 Score=22.14 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=8.5
Q ss_pred hcccCCCCCCC
Q 020560 42 NLVCATCGKPC 52 (324)
Q Consensus 42 e~~C~~Cg~~~ 52 (324)
-|.|+.||+.+
T Consensus 3 ~~~C~~C~k~f 13 (30)
T 2lvr_A 3 PYVCIHCQRQF 13 (30)
Confidence 37899998864
No 160
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.01 E-value=35 Score=21.00 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=26.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-..|.. .|..= .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVRHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHG--GGCCC-------SCCSSCCC
T ss_pred CCeECCCCChhhCCHHHHHHHHH--hcCCC-------CCCCCCCC
Confidence 34689999999988888888875 56431 23788776
No 161
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.66 E-value=30 Score=21.34 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=26.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2emm_A 11 RPHKCNECGKSFIQSAHLIQHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHSCC-------CTTSSSCC
T ss_pred CCeeCCCCChhhCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999998888888876 46431 23788776
No 162
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.60 E-value=32 Score=21.26 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------k~~~C~~c 46 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHLARHQL--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHT--TTCCC-------CCSCCSCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34689999999988888888865 46531 23778776
No 163
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.13 E-value=31 Score=21.40 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=25.3
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------k~~~C~~c 46 (46)
T 2emf_A 11 KHFECTECGKAFTRKSTLSMHQK--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESCHHHHHHHGG--GTSCS-------SCSCCCCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34678899998888888888866 45421 23777776
No 164
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.75 E-value=34 Score=21.13 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=26.0
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..= .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSYLSRHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHT--TTCCC-------CCCSCCCC
T ss_pred CCeECCCCCchhCChHHHHHHHh--hcCCC-------CCCCCCCC
Confidence 34689999999988888888876 46431 23778776
No 165
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.61 E-value=28 Score=21.44 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=24.7
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2eov_A 12 PYKCSDCGKSFTWKSRLRIHQK--CHTG-------ERHSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHHH--HHSC-------CSSCCSCCC
T ss_pred CccCCccChhhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 4678889988888888888865 4542 123777766
No 166
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=40.30 E-value=16 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHhCC--CCHHHHHHHHHHhcCCC
Q 020560 124 MGFPVARATRALHYSGN--ANVEAAVNWVVEHENDP 157 (324)
Q Consensus 124 MGF~~~~a~kAL~~Tgn--~~~E~A~~WL~~H~dD~ 157 (324)
|+|+++.-..-|..-.+ .+++.+..|++.|....
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a 36 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDA 36 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhH
Confidence 89999999988865444 47999999999988753
No 167
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.19 E-value=35 Score=21.05 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=25.9
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~c 46 (46)
T 2ytj_A 11 KPYICAECGKAFTIRSNLIKHQK--IHTKQ-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HTSCC-------CCSSCSCC
T ss_pred cCeECCCCChhhCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34689999999988888888876 46431 23777766
No 168
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.10 E-value=30 Score=21.40 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=26.9
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2en6_A 11 KPYGCNECGKTFSQKSILSAHQR--THTGE-------KPSGPSSG 46 (46)
T ss_dssp CCEEETTTTEEESSHHHHHHHHH--HHSSC-------CCSSSCCC
T ss_pred cCeECCCCCcccCchHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34689999999999988888976 46431 23788776
No 169
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.10 E-value=32 Score=21.27 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=26.4
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2ytd_A 11 KPYKCSECGKAFHRHTHLNEHRR--IHTGY-------RPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHTCC-------CSSCSSCC
T ss_pred cCeECCCCCCeeCChHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34689999999988888888865 46531 23788877
No 170
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.04 E-value=32 Score=20.99 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=26.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 44 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLLVHQQ--THAEE-------KPSGPSSG 44 (44)
T ss_dssp CCEECSSSSCEESSHHHHHHHHH--HHTSS-------CSCSCCCC
T ss_pred cCccCCCCCcccCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 35789999999999888888876 36431 23778776
No 171
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=39.97 E-value=89 Score=22.15 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=34.5
Q ss_pred cccCHHHHHHHH--hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 111 PEVDKELLKELE--AMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 111 ~~vd~~~l~~L~--~MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
..|.++++.+.. =-|-|++...+-|..|+ -++..|+|-|++..|+
T Consensus 6 ~~vPe~li~q~q~VLqgksR~vIirELqrTn-LdVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 6 SVIPEELISQAQVVLQGKSRSVIIRELQRTN-LDVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGSCHHHHHHHHHHSTTCCHHHHHHHHHHTT-TCHHHHHHHHHC----
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHhC-ccHHHHHHHHhccccC
Confidence 456778876654 47999999999999995 6999999999986543
No 172
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.63 E-value=33 Score=21.28 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=24.8
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ytq_A 12 PYGCSECGKAFSSKSYLIIHMR--THSGE-------KPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHT--TTCCS-------CSSCCCCC
T ss_pred CcCCCccChhhCChHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 4678889888888888888865 46531 23777766
No 173
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.56 E-value=31 Score=21.29 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.3
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2em7_A 12 PYKCEECGKGFICRRDLYTHHM--VHTG-------EKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESCHHHHHHHGG--GGTT-------CCCSSTTCC
T ss_pred CccCCCccchhCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 4689999999988888888865 4642 123778776
No 174
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.36 E-value=37 Score=20.93 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYSHQR--SHSGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HSCCS-------SCCSSCCC
T ss_pred CCcCCCCCCCcCCChHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999999888888976 46431 23788776
No 175
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.13 E-value=29 Score=21.46 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=24.1
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ytn_A 12 PYKCNECGKVFTQNSHLARHRG--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHGG--GTSCC-------CCCSCCCC
T ss_pred CeECCCCCCeeCCHHHHHHHhh--hcCCC-------CCCCCCCC
Confidence 4678888888888888888854 45421 23677766
No 176
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=38.98 E-value=33 Score=21.08 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=25.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2em9_A 11 KPYNCKECGKSFRWASCLLKHQR--VHSGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGG--GGTSC-------CCCSTTCC
T ss_pred cCeECCccccccCChHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999988888888865 46431 23778776
No 177
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.82 E-value=34 Score=21.14 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=26.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSKFNLDMHQK--VHTGE-------RPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESCHHHHHHHHT--TSCSC-------CSSCCSCC
T ss_pred CCeECCCCCCccCCHHHHHHHHH--hhCCC-------CCCCCCCC
Confidence 34689999999998888888876 46531 23788776
No 178
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.77 E-value=32 Score=21.23 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=24.0
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLNRHSM--VHTAE-------KPSGPSSG 46 (46)
T ss_dssp SCCCSSSCCCCSSHHHHHHHHH--HTTCC-------CSSSCCCC
T ss_pred CcCCCcCCchhCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 4678888888888888888865 45421 23677766
No 179
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.20 E-value=28 Score=21.58 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=26.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2em8_A 11 KPYKCVECGKGYKRRLDLDFHQR--VHTGE-------KLSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHHCC-------CCCCSCCC
T ss_pred CCeECcccCchhCCHHHHHHHHH--HHcCC-------CCCCCCCC
Confidence 34689999999988888888876 46431 23778776
No 180
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.13 E-value=32 Score=21.26 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=26.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2en1_A 11 KPFKCEECGKRFTQNSQLHSHQR--VHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESSHHHHHHHGG--GGSCC-------CCSCCCCC
T ss_pred CCeeCCCCCcccCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 34689999999988888888875 46431 23778776
No 181
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.05 E-value=35 Score=20.99 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=25.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2eq4_A 11 KLYNCKECGKSFSRAPCLLKHER--LHSG-------EKPSGPSSG 46 (46)
T ss_dssp CCCCBTTTTBCCSCHHHHHHHHH--HCCS-------SSCCCCCCC
T ss_pred CCeECCCCCCccCchHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 34678899999888888888875 4643 123777776
No 182
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.94 E-value=37 Score=20.88 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=22.8
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. +.|.. ...|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~-~~H~~-------~k~~~C~~C 47 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWR-YYHTG-------EKPSGPSSG 47 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHT-TTTTT-------SCSSSCCCC
T ss_pred CEECCccCchhCChHHHHHHhH-hhcCC-------CCCCCCCCC
Confidence 3578888888877777777765 24432 123677666
No 183
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.73 E-value=35 Score=21.07 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=25.5
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2yso_A 12 SHQCRECGEIFFQYVSLIEHQV--LHMGQ-------KNSGPSSG 46 (46)
T ss_dssp CEECTTTCCEESSHHHHHHHHH--HHSCC-------SCCCTTCC
T ss_pred CEEccccChhhCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 4689999999988888888876 45421 23778776
No 184
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.65 E-value=24 Score=19.07 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=17.6
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp EECSSSCCEESCHHHHHHHHT
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 579999999988888888865
No 185
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.45 E-value=36 Score=20.98 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=23.6
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2epz_A 12 PFDCIDCGKAFSDHIGLNQHRR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHT--TTTTC-------CCCSSCCC
T ss_pred CeECCCCCceeCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 4578888888888877777865 45421 23677766
No 186
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.80 E-value=34 Score=21.21 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=23.1
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|.. ...|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQR--VHMG-------EKTSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGG--GGGS-------CCCCCSCCC
T ss_pred CeeCcccCchhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 4578888888877777777755 4542 123677766
No 187
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.34 E-value=31 Score=21.34 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=25.6
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~c 46 (46)
T 2emh_A 11 RPYICTVCGKAFTDRSNLIKHQK--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSHHHHHHHHH--HHHC-------SSCSSSCCC
T ss_pred CCcCCCCCCchhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 34689999999988888888875 4542 123778776
No 188
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.59 E-value=33 Score=21.11 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=23.3
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHT--TTTT-------CSCCCSCCC
T ss_pred CcCCCCCCCccCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 3578888888888777777865 4542 123677766
No 189
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.39 E-value=32 Score=21.21 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=25.7
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2emp_A 11 KPYMCNECGKAFSVYSSLTTHQV--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHHH--HHHC-------CSCCSCCCC
T ss_pred cCeECCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 34689999999988888888876 4542 123778776
No 190
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=35.27 E-value=9.7 Score=28.51 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=16.2
Q ss_pred eeeccc--CcccccchHHHHHHHH
Q 020560 5 SLKCGD--CGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~--C~~v~~~~~eaq~hae 26 (324)
...|.. ||..+.....-+.|..
T Consensus 6 ~~~C~~~~C~~~f~~~~~l~~H~~ 29 (119)
T 2jp9_A 6 PFMCAYPGCNKRYFKLSHLQMHSR 29 (119)
T ss_dssp CBCCCSTTSCCCBSCHHHHHHHHH
T ss_pred eeeCCCCCCcchhCCHHHHHHHHH
Confidence 456775 8888877777777766
No 191
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.56 E-value=35 Score=21.11 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=26.0
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-...|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2eoo_A 11 RPYGCNECGKNFGRHSHLIEHLK--RHFR-------EKSSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH--HHHS-------TTSSCCSCC
T ss_pred CCEEccccCcccCCHHHHHHHHH--HHcC-------CCCCCCCCC
Confidence 34689999999988888888876 3542 123788776
No 192
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.54 E-value=27 Score=18.79 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.5
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-..|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLR 24 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHHHH
Confidence 3579999999988877777764
No 193
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.29 E-value=25 Score=18.91 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=17.7
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..||..+.....-..|..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~ 23 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHYR 23 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHHH
Confidence 479999999988888888866
No 194
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.15 E-value=26 Score=18.62 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.0
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..||..+.....-+.|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 368888888887777777764
No 195
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=33.84 E-value=12 Score=30.73 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=16.6
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-+.|..
T Consensus 77 ~~~C~~C~~~f~~~~~l~~H~~ 98 (190)
T 2i13_A 77 PYKCPECGKSFSQRANLRAHQR 98 (190)
T ss_dssp CEECTTTCCEESCHHHHHHHHH
T ss_pred CccCcccCCccCCHHHHHHHHH
Confidence 4678888888877777777766
No 196
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=33.61 E-value=34 Score=21.18 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=22.1
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ely_A 12 PFKCVECGKGFSRRSALNVHHK--LHTGE-------KPSGPSSG 46 (46)
T ss_dssp SBCCSSSCCCBSSTTHHHHHHH--HHSCC-------SSCSCCCC
T ss_pred CcccCccCcccCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 3567778887777777777765 35421 23667665
No 197
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=33.46 E-value=12 Score=25.56 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=9.9
Q ss_pred CCCceeecccCcc
Q 020560 1 MAGVSLKCGDCGA 13 (324)
Q Consensus 1 ~~~~~L~C~~C~~ 13 (324)
|....+.|..||.
T Consensus 1 m~~~~~~CP~C~~ 13 (50)
T 1pft_A 1 MVNKQKVCPACES 13 (50)
T ss_dssp CCSSCCSCTTTSC
T ss_pred CCCccEeCcCCCC
Confidence 5566788999975
No 198
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=33.41 E-value=55 Score=21.43 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 020560 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (324)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~ 154 (324)
+++.+.++ -|.+...|..-|..++. +++.|++-.|++.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Ai~~ff~~~ 45 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGW-DLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTS-CSHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 44555553 58899999998988765 8999999777653
No 199
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.32 E-value=30 Score=21.53 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=24.4
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|..- .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSCTQHQR--LHTGQ-------RPSGPSSG 46 (46)
T ss_dssp SSSBTTTTBCCSSHHHHHHHHH--HHHSC-------CCCCCCCC
T ss_pred CcCCCCCCchhCCHHHHHHHHH--HcCCC-------CCCCCCCC
Confidence 4678889888888888888876 35421 23677766
No 200
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.09 E-value=91 Score=22.70 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred CHHHHHHHHh-CC-CCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 114 DKELLKELEA-MG-FPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 114 d~~~l~~L~~-MG-F~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
..+.|.+.++ -| -+...|..-|..++. +++.|++-.|++.++
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNW-NIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTS-CHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 3456666665 57 788899999988876 899999999987654
No 201
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=33.00 E-value=57 Score=29.11 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 115 KELLKELEAMGFPVARATRALHYS 138 (324)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~T 138 (324)
.++++.|+.+||++..|.+|+...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 689999999999999999998653
No 202
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=32.95 E-value=44 Score=29.51 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh-C-CCCHHH
Q 020560 114 DKELLKELEAMGFPVARATRALHYS-G-NANVEA 145 (324)
Q Consensus 114 d~~~l~~L~~MGF~~~~a~kAL~~T-g-n~~~E~ 145 (324)
..++++.|+.+||++..|.+|+... . +.+++.
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~ 193 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSET 193 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHH
Confidence 3689999999999999999999875 2 335553
No 203
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.63 E-value=27 Score=18.88 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=17.6
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
..|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHT
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 579999999988888888875
No 204
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.95 E-value=1.3e+02 Score=21.41 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 020560 115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (324)
Q Consensus 115 ~~~l~~L~~-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~H~dD 156 (324)
.+++.+.++ .|-+...|..-|..++. +++.|++-.|++.+.
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNN-NLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTS-CHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCCC
Confidence 345666654 68999999998887765 899999988886643
No 205
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.49 E-value=40 Score=18.02 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=16.6
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTSKMRHLE 24 (30)
T ss_dssp EECTTTCCEESCHHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 578889988887777777765
No 206
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.36 E-value=28 Score=18.90 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.3
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQAHMR 24 (27)
T ss_dssp EEETTTTEEESCHHHHHHHHT
T ss_pred cCCCCCCcccCCHHHHHHHHH
Confidence 579999999988887777764
No 207
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.36 E-value=56 Score=20.02 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=19.8
Q ss_pred ceeecccCcccccchHHHHHHHHHcccC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~ 31 (324)
-..+|..||..+.....-+.|.. .|.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2ep3_A 11 KPYRCAECGKAFTDRSNLFTHQK--IHT 36 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTT
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HcC
Confidence 34678889988888888888875 454
No 208
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.96 E-value=84 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=28.3
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 020560 116 ELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEH 153 (324)
Q Consensus 116 ~~l~~L~~M--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~H 153 (324)
..++++.++ -+..-.+.+.|.+.++ |+|.+++.||+.
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~-nvE~vin~LLE~ 53 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHY-DPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTT-CHHHHHHHHHTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 445666655 2556788888988876 899999999984
No 209
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.55 E-value=31 Score=21.31 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=24.1
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|.. ...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSHLARHRR--VHTG-------GKPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSSHHHHHHTH--HHHS-------CCCSCSCCC
T ss_pred CCeECCcCCchhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 34678888888888877777765 4532 123677766
No 210
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=30.40 E-value=2.7e+02 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 020560 176 SSLTPEEIKLKAQELRERAR 195 (324)
Q Consensus 176 ~~lT~EEk~~k~~el~~k~r 195 (324)
-.||++|...+++.|...+.
T Consensus 6 ~al~~~~v~~~i~~m~~fI~ 25 (233)
T 4efa_E 6 TALTPNQVNDELNKMQAFIR 25 (233)
T ss_dssp CSSCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHH
Confidence 37999999999988877664
No 211
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=30.37 E-value=7.9 Score=22.51 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=8.2
Q ss_pred cccCCCCCCC
Q 020560 43 LVCATCGKPC 52 (324)
Q Consensus 43 ~~C~~Cg~~~ 52 (324)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 7899999863
No 212
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.77 E-value=17 Score=22.02 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.0
Q ss_pred hcccCCCCCCCCC
Q 020560 42 NLVCATCGKPCRS 54 (324)
Q Consensus 42 e~~C~~Cg~~~~~ 54 (324)
-|.|+.||+.+.+
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 11 PYRCDQCGKAFSQ 23 (42)
T ss_dssp SBCCTTTTCCBSS
T ss_pred CeeCCCccchhCC
Confidence 4899999987533
No 213
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.44 E-value=31 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=15.2
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytg_A 12 PFKCGECGKSYNQRVHLTQHQR 33 (46)
T ss_dssp SEECTTTCCEESSSHHHHTTGG
T ss_pred CeECCCCCcccCCHHHHHHHHH
Confidence 4577777777777766666654
No 214
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.60 E-value=63 Score=19.84 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=25.0
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
-..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~~ 46 (46)
T 2em2_A 11 KPFKCKECGKAFRQNIHLASHLR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHCCC-------CSSCSSCC
T ss_pred CCEECCcCCchhCCHHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999988888888866 45421 23677654
No 215
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=28.57 E-value=32 Score=19.88 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=17.7
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
..|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~F~~~~~L~~H~~ 23 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSKHIT 23 (33)
T ss_dssp CCCSSSCCCCSSHHHHHHHHH
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 479999999988888888875
No 216
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.22 E-value=59 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=14.6
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-+.|..
T Consensus 7 ~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 7 PFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp CEECSSSCCEESSHHHHHHHHG
T ss_pred CeeCCCCCcccCCHHHHHHHHH
Confidence 3567777777776666666654
No 217
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=27.52 E-value=58 Score=19.21 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=16.4
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-..|..
T Consensus 6 ~~~C~~C~k~f~~~~~L~~H~~ 27 (39)
T 1njq_A 6 SYTCSFCKREFRSAQALGGHMN 27 (39)
T ss_dssp SEECTTTCCEESSHHHHHHHHH
T ss_pred ceECCCCCcccCCHHHHHHHHH
Confidence 4678888888877777777765
No 218
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=27.49 E-value=20 Score=29.69 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=29.1
Q ss_pred ceeecccCcccc--------------cchHHHHHHHHHcccC--CCCchhhhhhhcccCCCC
Q 020560 4 VSLKCGDCGALL--------------RSVQEAQEHAELTSHS--NFSESTEAVLNLVCATCG 49 (324)
Q Consensus 4 ~~L~C~~C~~v~--------------~~~~eaq~hae~TgH~--~F~E~~e~v~e~~C~~Cg 49 (324)
..++|.+||+.. .+...+.+..++.-+. .|.=-.=.+.-++|.+|-
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA 80 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA 80 (119)
T ss_dssp CEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred ccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence 368999999977 4566667777754432 332212235568999993
No 219
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=27.33 E-value=29 Score=26.39 Aligned_cols=29 Identities=31% Similarity=0.765 Sum_probs=19.7
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCC
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
..|.|++|+.. +...|. ++-.+|+.||+-
T Consensus 36 v~I~CnDC~~~--------------s~v~~h-----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 36 VDILCNDCNGR--------------STVQFH-----ILGMKCKICESY 64 (79)
T ss_dssp EEEEESSSCCE--------------EEEECC-----TTCCCCTTTSCC
T ss_pred eEEECCCCCCC--------------ccCCce-----eecccCcCCCCc
Confidence 35889999975 444442 334589999974
No 220
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.16 E-value=28 Score=24.03 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=31.4
Q ss_pred ceeeccc--CcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCC
Q 020560 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (324)
Q Consensus 4 ~~L~C~~--C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~ 52 (324)
-..+|.. |+..+.....-+.|.. .|.. ...|.|+.||+.|
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C~k~F 78 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMK--LHSD-------TRDYICEFSGPSS 78 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHH--HHHT-------SCCCSCCSSSCCC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHH--HhCC-------CCCeeCCCCCCCC
Confidence 3468998 9999999999999987 4542 1348999999863
No 221
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.09 E-value=38 Score=18.35 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.1
Q ss_pred eecccCcccccchHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHA 25 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~ha 25 (324)
.+|..||..+.....-..|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRHA 22 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHHH
T ss_pred cCCcccCcccCChHHHHHHH
Confidence 46888888887777777774
No 222
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=26.70 E-value=17 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.480 Sum_probs=29.8
Q ss_pred ceeeccc--CcccccchHHHHHHHHHcccCCCCchhhhhhhcccCC---CCCC
Q 020560 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT---CGKP 51 (324)
Q Consensus 4 ~~L~C~~--C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~---Cg~~ 51 (324)
...+|.. |+..+.....-+.|.. .|.. |.|+. ||+.
T Consensus 30 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~----------~~C~~~~~C~~~ 70 (85)
T 2j7j_A 30 LPYECPHEGCDKRFSLPSRLKRHEK--VHAG----------YPCKKDDSCSFV 70 (85)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHHH--HHHS----------EECCSCSSCCCE
T ss_pred CCeeCCCCCCcCccCCHHHHHHHHH--HhCC----------CCCCCCCCCCCc
Confidence 3478988 9999999999999986 4554 89999 9985
No 223
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.45 E-value=5.1 Score=27.32 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=22.5
Q ss_pred ceeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCCCCCCCCcccccc
Q 020560 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60 (324)
Q Consensus 4 ~~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~Cg~~~~~~~e~~~ 60 (324)
....|..||..+.... ++.. ...|.|+.||+.+.+......
T Consensus 17 ~~~~C~~C~k~f~~~~------------~l~~----~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRS------------TLSR----RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp SEEECSSSCCEEECCC------------CCCC----SSSCCCHHHHHTCSCCCSSCC
T ss_pred CCeeCCcccchhCCHH------------HhCc----CCCCCCCCCChhhcCHHHHHH
Confidence 3467888887774321 1111 234888888876544333333
No 224
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.39 E-value=22 Score=21.56 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=8.2
Q ss_pred hcccCCCCCCC
Q 020560 42 NLVCATCGKPC 52 (324)
Q Consensus 42 e~~C~~Cg~~~ 52 (324)
.|.|+.||+.+
T Consensus 11 ~~~C~~C~k~f 21 (42)
T 2eos_A 11 PYPCEICGTRF 21 (42)
T ss_dssp CBCCSSSCCCB
T ss_pred CEECCCCCCcc
Confidence 47888888764
No 225
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.81 E-value=37 Score=18.10 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=16.2
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
..|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLR 23 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHH
Confidence 478889888887777777765
No 226
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.61 E-value=64 Score=18.13 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=14.6
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-+.|..
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H~~ 28 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRSHIR 28 (35)
T ss_dssp SEECSSSCCEESSHHHHHHHHH
T ss_pred CeECCCCcchhCCHHHHHHHHH
Confidence 3567777777766666666654
No 227
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.88 E-value=65 Score=18.52 Aligned_cols=12 Identities=17% Similarity=0.717 Sum_probs=6.0
Q ss_pred cccCCCCCCCCC
Q 020560 43 LVCATCGKPCRS 54 (324)
Q Consensus 43 ~~C~~Cg~~~~~ 54 (324)
|.|+.||+.|..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 455555554433
No 228
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.58 E-value=68 Score=18.35 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=15.6
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..|+..+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKAHMN 30 (36)
T ss_dssp SEECSSSSCEESCHHHHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHHHH
Confidence 4577788877777777677754
No 229
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.43 E-value=56 Score=18.63 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=12.1
Q ss_pred eecccCcccccchHHHHHHHH
Q 020560 6 LKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 6 L~C~~C~~v~~~~~eaq~hae 26 (324)
..|..||..+.....-+.|..
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elr_A 10 HLCDMCGKKFKSKGTLKSHKL 30 (36)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH
T ss_pred eecCcCCCCcCchHHHHHHHH
Confidence 456666666655555555543
No 230
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=24.14 E-value=33 Score=27.30 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=34.2
Q ss_pred eeecccCcccccchHHH--H--HHHHHcccCCCC-ch-hhhhh--hcccCCCCCCC---CCcccc--ccccccccccccc
Q 020560 5 SLKCGDCGALLRSVQEA--Q--EHAELTSHSNFS-ES-TEAVL--NLVCATCGKPC---RSKTET--DLHRKRTGHTDFV 71 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~ea--q--~hae~TgH~~F~-E~-~e~v~--e~~C~~Cg~~~---~~~~e~--~~a~K~t~f~tFP 71 (324)
.|.|-.|+..+.-..+. + .=+=.+|...=. +. .+.++ .++|+.||..+ -|-+-+ +.+.+.+..+.||
T Consensus 8 ILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~ear~~~~~~~~~ 87 (97)
T 2k5r_A 8 LLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEEAIATIQIANFP 87 (97)
T ss_dssp SCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGGEEEGGGCTTCC
T ss_pred heECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChHHhcccccccCCc
Confidence 36899999877443221 1 011112222111 11 11122 38999998432 111111 2355566677777
Q ss_pred cchh
Q 020560 72 DKTS 75 (324)
Q Consensus 72 d~L~ 75 (324)
|.|-
T Consensus 88 ~~~~ 91 (97)
T 2k5r_A 88 DKLE 91 (97)
T ss_dssp CCCC
T ss_pred chhh
Confidence 7764
No 231
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=24.14 E-value=33 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 020560 112 EVDKELLKELEAMGFPVARATRALHYSGNAN----VEAAVNWVVE 152 (324)
Q Consensus 112 ~vd~~~l~~L~~MGF~~~~a~kAL~~Tgn~~----~E~A~~WL~~ 152 (324)
.+.+++...|..+|||-...+.+|...|... +=.|+.||.+
T Consensus 70 ~~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 70 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLID 114 (120)
T ss_dssp THHHHHHHHHHHTTCCSCCCHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCceeCHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 4567889999999999988888898887632 7889999975
No 232
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=24.06 E-value=24 Score=29.08 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=31.2
Q ss_pred eecccCccccc----chHHHHHHHHH---cccCCCCchhhhhhhcccCCCCC
Q 020560 6 LKCGDCGALLR----SVQEAQEHAEL---TSHSNFSESTEAVLNLVCATCGK 50 (324)
Q Consensus 6 L~C~~C~~v~~----~~~eaq~hae~---TgH~~F~E~~e~v~e~~C~~Cg~ 50 (324)
-.|..||.|+= ++.-|..|.+. |||...-.... ...+|=.|+.
T Consensus 55 w~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~t--~~vwCY~cd~ 104 (126)
T 2i50_A 55 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDN--WSVWCYVCDN 104 (126)
T ss_dssp EEETTTCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETTT--CCEEETTTTE
T ss_pred eeeeeCCccccCCCCcchHHHHHHhCcCCCCCcEEEECCC--CeEEeCCCCc
Confidence 46888999982 45779999998 79987755421 2367877864
No 233
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.67 E-value=26 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.388 Sum_probs=22.7
Q ss_pred eeecccCccccc----chHHHHHHHHHcccCCCCch-hhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLR----SVQEAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~----~~~eaq~hae~TgH~~F~E~-~e~v~e~~C~~Cg~~ 51 (324)
-+.|..||.|.. .....+.+.. ....|.-. ...++--.|+.|.++
T Consensus 90 HliC~~Cg~v~~~~~~~~~~~~~~~~--~~~gf~i~~~~l~~~GiC~~C~~~ 139 (145)
T 3eyy_A 90 HLVCRDCTNVIEADLSVAADFTAKLR--EQFGFDTDMKHFAIFGRCESCSLK 139 (145)
T ss_dssp EEEESSSSCEEEECGGGGHHHHHHHH--HHTCEEECSCSSCEEEEECC----
T ss_pred EEEECCCCCEEEecCccHHHHHHHHH--HhCCCEEEeEEEEEEEECHHHhCc
Confidence 478999999972 1233333332 12334221 234555789999864
No 234
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=23.51 E-value=46 Score=27.15 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=7.0
Q ss_pred ccCcccccchHHHHHHH
Q 020560 9 GDCGALLRSVQEAQEHA 25 (324)
Q Consensus 9 ~~C~~v~~~~~eaq~ha 25 (324)
..||..+.....-+.|.
T Consensus 48 ~~C~~~f~~~~~l~~H~ 64 (190)
T 1tf6_A 48 EGCEKGFTSLHHLTRHS 64 (190)
T ss_dssp TTCCCCCSSHHHHHHHH
T ss_pred CCCChhhCCHHHHHHHH
Confidence 33444444444444443
No 235
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=23.21 E-value=17 Score=21.99 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=10.3
Q ss_pred hhhcccCCCCCC
Q 020560 40 VLNLVCATCGKP 51 (324)
Q Consensus 40 v~e~~C~~Cg~~ 51 (324)
.++|.|.+|.++
T Consensus 3 lvdffcetcskp 14 (26)
T 1loi_A 3 LVDFFCETCSKP 14 (26)
T ss_dssp HHHHHHHTSSCT
T ss_pred hHHHHHHhcCCc
Confidence 468999999987
No 236
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.62 E-value=38 Score=20.91 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=22.5
Q ss_pred eeecccCcccccchHHHHHHHHHcccCCCCchhhhhhhcccCCC
Q 020560 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae~TgH~~F~E~~e~v~e~~C~~C 48 (324)
..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRLTQHWI--THTR-------EKPSGPSSG 46 (46)
T ss_dssp TTCCSSSCCCCSSHHHHHHHHT--HHHH-------CCCCSCCCC
T ss_pred CeeCCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence 3568888888877777777765 3432 123677666
No 237
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.24 E-value=83 Score=17.96 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=13.9
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-..|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDRHML 30 (36)
T ss_dssp CEECSSSCCEESSHHHHHHHHT
T ss_pred CeECCCCCCccCCHHHHHHHHH
Confidence 3567777777766666666654
No 238
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.93 E-value=25 Score=25.95 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=8.1
Q ss_pred HcccCCCCchhhhhhhcccCCCCCC
Q 020560 27 LTSHSNFSESTEAVLNLVCATCGKP 51 (324)
Q Consensus 27 ~TgH~~F~E~~e~v~e~~C~~Cg~~ 51 (324)
.||-++++...-..+.|.|..||..
T Consensus 6 ~~~g~~~~~~~~~~v~Y~C~~Cg~~ 30 (63)
T 3h0g_L 6 STGGTAFNPPRPATMIYLCADCGAR 30 (63)
T ss_dssp -------------CCCCBCSSSCCB
T ss_pred cCCccccCCCCCCCeEEECCCCCCe
Confidence 3566666665444566777777754
No 239
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.65 E-value=63 Score=18.59 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=14.5
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (37)
T 2elo_A 9 SYSCPVCEKSFSEDRLIKSHIK 30 (37)
T ss_dssp CCEETTTTEECSSHHHHHHHHH
T ss_pred CcCCCCCCCccCCHHHHHHHHH
Confidence 3567777777766666666654
No 240
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.13 E-value=75 Score=18.17 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=15.2
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||+.+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQAHLR 30 (36)
T ss_dssp CEECTTTCCEESSHHHHHHHHH
T ss_pred CEECCCCCceeCCHHHHHHHHH
Confidence 4567777777777666666654
No 241
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.90 E-value=1.3e+02 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020560 246 EKRAREKIRQKLEED 260 (324)
Q Consensus 246 e~~ARerir~qIe~D 260 (324)
...-.+.++++|+.|
T Consensus 57 r~~Kl~~~~e~l~~~ 71 (86)
T 3nr7_A 57 RTRKLQQYREMLIAD 71 (86)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 333445566666544
No 242
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.74 E-value=32 Score=19.24 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=7.7
Q ss_pred cccC--CCCCCC
Q 020560 43 LVCA--TCGKPC 52 (324)
Q Consensus 43 ~~C~--~Cg~~~ 52 (324)
|.|+ .||+.+
T Consensus 4 ~~C~~~~C~k~f 15 (32)
T 1zfd_A 4 YSCDHPGCDKAF 15 (32)
T ss_dssp BCCCCTTCCCCB
T ss_pred CcCcCCCCCCcc
Confidence 7888 888864
No 243
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.22 E-value=33 Score=28.81 Aligned_cols=45 Identities=20% Similarity=0.492 Sum_probs=24.3
Q ss_pred eeecccCcccccc----hHHHHHHHHHcccCCCCch-hhhhhhcccCCCCCC
Q 020560 5 SLKCGDCGALLRS----VQEAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (324)
Q Consensus 5 ~L~C~~C~~v~~~----~~eaq~hae~TgH~~F~E~-~e~v~e~~C~~Cg~~ 51 (324)
-+.|..||.|..= ....+.+.. ....|.-. ...++--.|+.|.++
T Consensus 107 HliC~~CG~v~e~~~~~~~~~~~~~~--~~~Gf~i~~~~l~~~GiC~~C~~~ 156 (162)
T 4ets_A 107 HMICKNCGKIIEFENPIIERQQALIA--KEHGFKLTGHLMQLYGVCGDCNNQ 156 (162)
T ss_dssp EEEETTTCCEEEECCHHHHHHHHHHH--HHTTCEEEEEEEEEEEECSTTC--
T ss_pred EEEECCCCCEEEecccchhHHHHHHH--HhCCCEEEEEEEEEEEEChHHcCc
Confidence 3789999999821 222333322 22345322 234455689999864
No 244
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.06 E-value=98 Score=18.32 Aligned_cols=22 Identities=18% Similarity=0.591 Sum_probs=16.9
Q ss_pred eeecccCcccccchHHHHHHHH
Q 020560 5 SLKCGDCGALLRSVQEAQEHAE 26 (324)
Q Consensus 5 ~L~C~~C~~v~~~~~eaq~hae 26 (324)
..+|..||..+.....-+.|..
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~ 31 (42)
T 2el5_A 10 PYECSECGKAFNRKDQLISHQR 31 (42)
T ss_dssp SEECSSSCCEESSHHHHHHHHG
T ss_pred CccCCCcChhhCCHHHHHHHHH
Confidence 4678888888887777777765
Done!