BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020562
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 240 bits (612), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 154/233 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q+RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 153/233 (65%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + YRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 153/233 (65%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 152/233 (65%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAA 241
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 4/209 (1%)
Query: 110 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEE 168
R++ + GE + DF + E ++Y M+ +++D R G+ SF G E
Sbjct: 17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 169 AINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS 227
A + A A+ D++ P YR+ G+ L G L++ Q+ A KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 228 KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME 287
K LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSEGD++A +NFAAV
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194
Query: 288 APVVFICRNNGWAISTNISEQFRSTAITS 316
AP VFI NN +AIS + Q S I
Sbjct: 195 APAVFIAENNFYAISVDYRHQTHSPTIAD 223
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 114/194 (58%), Gaps = 1/194 (0%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + M+ ++ DS + AQRQ + SFY+ ++GEEA
Sbjct: 56 RVLDEQGD-AQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEA 114
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L+ R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 115 IGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVRE 174
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP 289
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E DFH AL FA V AP
Sbjct: 175 AGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAP 234
Query: 290 VVFICRNNGWAIST 303
V+ NN WAIST
Sbjct: 235 VILNVVNNQWAIST 248
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 1/194 (0%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + + ++ DS AQRQ + SFY ++GEEA
Sbjct: 55 RVLDEQGD-AQGPWAEDIDPQILRQGXRAXLKTRIFDSRXVVAQRQKKXSFYXQSLGEEA 113
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 114 IGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNERDPLKGRQLPIXYSVRE 173
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP 289
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E DFH AL FA V AP
Sbjct: 174 AGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAP 233
Query: 290 VVFICRNNGWAIST 303
V+ NN WAIST
Sbjct: 234 VILNVVNNQWAIST 247
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQ 308
+NFA +AP +F+ +NN +AIST + +Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 214
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQ 308
+NFA +AP +F+ +NN +AIST + +Q
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 213
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+G+F+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQG 184
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQ 308
+NFA +AP +F+ +NN +AIST + +Q
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 213
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 112/209 (53%), Gaps = 9/209 (4%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQ 308
+NFA +AP +F+ +NN +A ST + +Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAASTPVEKQ 214
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T++
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225
Query: 306 SEQFRSTAITSFF 318
R+ A T ++
Sbjct: 226 E---RAAASTDYY 235
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 31 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 90
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 91 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 148
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T++
Sbjct: 149 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 208
Query: 306 SEQFRSTAITSFF 318
R+ A T ++
Sbjct: 209 E---RAAASTDYY 218
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAV 225
Query: 306 SEQFRSTAITSFF 318
R+ A T ++
Sbjct: 226 E---RAAASTDYY 235
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAV 225
Query: 306 SEQFRSTAITSFF 318
R+ A T ++
Sbjct: 226 E---RAAASTDYY 235
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
+R G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T++
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225
Query: 306 SEQFRSTAITSFF 318
R+ A T ++
Sbjct: 226 E---RAAASTDYY 235
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
G+EA +G A ++ D ++ YR G RG ++++ ++ K KG+ H
Sbjct: 71 GQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHX 130
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV 285
+K N+ + + Q+P G+A + K KD + GDG ++G A N AA+
Sbjct: 131 YAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAAL 188
Query: 286 MEAPVVFICRNNGWAISTNISEQFRSTAITSFF 318
+ P +FIC NN + T++ R+ A T ++
Sbjct: 189 WKLPCIFICENNRYGXGTSVE---RAAASTDYY 218
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
+T L A+G+A + + KD A GDG + G AALN M ++ + +N
Sbjct: 126 STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEM 185
Query: 300 AISTNIS 306
+IS N+
Sbjct: 186 SISENVG 192
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
+T + +G+A + + E K+ V GDG + G A N A + + I +N
Sbjct: 124 STSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEX 183
Query: 300 AISTNI 305
+IS N+
Sbjct: 184 SISENV 189
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 210 ANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVA 264
A+ +D G G PIH + + ++P+AT L A+ + Y L EK +DA VA
Sbjct: 307 ASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVA 366
Query: 265 YTGDGGTSEGDFHAA 279
+ G GD ++A
Sbjct: 367 L--NNGFRTGDIYSA 379
>pdb|4DHK|A Chain A, Crystal Structure Of A Deoxycytidine Triphosphate
Deaminase (Dctp Deaminase) From Burkholderia
Thailandensis
pdb|4DHK|B Chain B, Crystal Structure Of A Deoxycytidine Triphosphate
Deaminase (Dctp Deaminase) From Burkholderia
Thailandensis
Length = 191
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 232 YITISSPIATQLPQAV----GVAYSLKMEKKDACAVAYTGDGGTSEG 274
Y+T+ T LP + GVA L E + C V+Y GG +G
Sbjct: 136 YVTLEFSNTTPLPAKIYANEGVAQVLFFESDEVCDVSYADRGGKYQG 182
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 210 ANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK 258
A+ + DG G P+H + + I++P+AT L A+ + YS +E++
Sbjct: 286 ASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEE 334
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ 155
D Q+V E+ V SH+ TL+V+D + Y+ ++
Sbjct: 63 DRQEVINELFVTEASHLRTLRVLDLIFYQRMKK 95
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ 155
D Q+V E+ V SH+ TL+V+D + Y+ ++
Sbjct: 26 DRQEVINELFVTEASHLRTLRVLDLIFYQRMKK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,014,339
Number of Sequences: 62578
Number of extensions: 352634
Number of successful extensions: 694
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 46
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)