Query 020562
Match_columns 324
No_of_seqs 213 out of 1687
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1182 Branched chain alpha-k 100.0 3.4E-84 7.3E-89 616.0 15.1 237 81-317 37-274 (432)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 7.4E-66 1.6E-70 501.3 20.5 214 107-320 2-220 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 3.5E-58 7.7E-63 449.6 20.9 194 125-318 25-219 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 3.4E-54 7.4E-59 418.2 20.9 199 123-321 13-219 (341)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 6.8E-54 1.5E-58 411.5 19.5 193 129-321 1-194 (315)
6 PLN02374 pyruvate dehydrogenas 100.0 2.4E-52 5.1E-57 416.7 21.2 198 124-321 80-285 (433)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 8.8E-51 1.9E-55 393.9 21.2 206 107-321 1-206 (341)
8 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 2.2E-50 4.8E-55 382.4 18.8 187 135-321 1-188 (293)
9 PF00676 E1_dh: Dehydrogenase 100.0 3.4E-50 7.4E-55 383.8 15.1 185 136-321 1-185 (300)
10 KOG0225 Pyruvate dehydrogenase 100.0 2E-48 4.4E-53 373.0 16.4 188 124-313 53-241 (394)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.9E-33 4E-38 301.0 18.4 188 126-321 185-408 (924)
12 cd02016 TPP_E1_OGDC_like Thiam 100.0 1.6E-33 3.4E-38 266.0 12.2 159 163-321 16-206 (265)
13 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.3E-28 7.3E-33 250.7 15.5 182 122-321 10-206 (581)
14 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 1E-24 2.3E-29 233.6 17.3 193 125-321 184-409 (929)
15 COG3959 Transketolase, N-termi 99.9 1.1E-20 2.4E-25 174.4 15.9 183 130-321 5-204 (243)
16 TIGR00232 tktlase_bact transke 99.8 1.4E-20 3E-25 196.8 15.8 171 140-321 5-204 (653)
17 PRK12754 transketolase; Review 99.8 4.4E-20 9.5E-25 193.4 16.7 171 140-321 9-208 (663)
18 PRK12753 transketolase; Review 99.8 1.5E-19 3.2E-24 189.4 15.6 171 140-321 9-208 (663)
19 PLN02790 transketolase 99.8 1.4E-19 3E-24 189.3 15.1 164 147-321 6-199 (654)
20 cd02007 TPP_DXS Thiamine pyrop 99.8 1.8E-19 3.9E-24 162.7 13.8 117 180-306 24-144 (195)
21 PTZ00089 transketolase; Provis 99.8 8.3E-19 1.8E-23 183.7 15.9 171 140-321 11-210 (661)
22 TIGR00204 dxs 1-deoxy-D-xylulo 99.8 5.7E-19 1.2E-23 183.7 13.8 172 121-309 7-183 (617)
23 cd02011 TPP_PK Thiamine pyroph 99.8 4E-19 8.8E-24 164.9 10.5 140 165-321 2-147 (227)
24 PRK05444 1-deoxy-D-xylulose-5- 99.8 8.7E-18 1.9E-22 173.3 14.8 195 107-321 2-205 (580)
25 cd02012 TPP_TK Thiamine pyroph 99.7 2.5E-17 5.3E-22 153.5 15.1 170 142-321 3-190 (255)
26 PLN02582 1-deoxy-D-xylulose-5- 99.7 8.7E-17 1.9E-21 169.0 14.6 167 121-305 40-211 (677)
27 cd02017 TPP_E1_EcPDC_like Thia 99.7 2.2E-16 4.8E-21 156.2 16.5 173 140-321 9-211 (386)
28 PRK05899 transketolase; Review 99.7 2.1E-16 4.5E-21 164.3 16.5 176 135-321 8-212 (624)
29 PF00456 Transketolase_N: Tran 99.7 6.6E-17 1.4E-21 157.4 9.1 172 139-321 5-205 (332)
30 PRK11864 2-ketoisovalerate fer 99.7 1.2E-16 2.6E-21 153.8 8.7 115 187-304 14-136 (300)
31 PRK12571 1-deoxy-D-xylulose-5- 99.6 2.1E-14 4.5E-19 150.3 15.6 169 121-306 15-188 (641)
32 KOG0523 Transketolase [Carbohy 99.6 5.2E-14 1.1E-18 144.5 16.1 177 135-321 10-204 (632)
33 TIGR03186 AKGDH_not_PDH alpha- 99.5 1.2E-13 2.5E-18 148.5 17.1 182 131-321 73-282 (889)
34 TIGR00759 aceE pyruvate dehydr 99.5 1.9E-13 4.1E-18 146.1 17.0 182 129-321 71-282 (885)
35 PLN02234 1-deoxy-D-xylulose-5- 99.5 1.3E-13 2.8E-18 144.4 15.5 183 122-321 74-282 (641)
36 PRK13012 2-oxoacid dehydrogena 99.5 9.9E-13 2.2E-17 141.7 17.1 182 129-321 85-296 (896)
37 PRK09405 aceE pyruvate dehydro 99.4 5E-12 1.1E-16 136.2 17.6 184 129-321 77-288 (891)
38 COG0021 TktA Transketolase [Ca 99.2 1.3E-10 2.9E-15 120.7 14.7 172 139-321 10-210 (663)
39 PRK05261 putative phosphoketol 99.2 7.6E-11 1.6E-15 125.8 12.3 157 158-321 49-227 (785)
40 COG1154 Dxs Deoxyxylulose-5-ph 99.1 3.5E-09 7.5E-14 109.8 15.5 169 121-306 11-185 (627)
41 cd00568 TPP_enzymes Thiamine p 99.0 4.8E-10 1E-14 96.1 5.7 70 231-306 40-109 (168)
42 PF13292 DXP_synthase_N: 1-deo 99.0 9.5E-10 2.1E-14 104.6 8.0 170 121-306 7-180 (270)
43 PLN02225 1-deoxy-D-xylulose-5- 99.0 6.7E-09 1.5E-13 110.0 13.8 186 120-322 84-276 (701)
44 cd02002 TPP_BFDC Thiamine pyro 98.8 6.4E-09 1.4E-13 91.1 6.3 62 237-304 49-111 (178)
45 cd02004 TPP_BZL_OCoD_HPCL Thia 98.7 7.3E-08 1.6E-12 84.4 8.7 67 235-307 46-113 (172)
46 cd02014 TPP_POX Thiamine pyrop 98.5 7.9E-08 1.7E-12 85.0 4.6 63 235-303 49-112 (178)
47 PRK07092 benzoylformate decarb 98.5 2.9E-07 6.2E-12 94.0 7.3 63 234-302 404-467 (530)
48 cd03372 TPP_ComE Thiamine pyro 98.4 4.9E-07 1.1E-11 80.6 5.6 59 236-303 41-103 (179)
49 cd02005 TPP_PDC_IPDC Thiamine 98.2 1.5E-06 3.2E-11 77.6 5.5 63 235-303 48-111 (183)
50 cd02015 TPP_AHAS Thiamine pyro 98.2 2.2E-06 4.7E-11 76.2 5.8 60 236-301 49-109 (186)
51 cd02013 TPP_Xsc_like Thiamine 98.2 2.4E-06 5.2E-11 77.0 5.3 63 235-303 51-114 (196)
52 PRK08327 acetolactate synthase 98.0 8.4E-06 1.8E-10 84.3 7.2 63 236-302 429-492 (569)
53 PRK12270 kgd alpha-ketoglutara 98.0 0.00015 3.3E-09 79.5 16.5 201 104-308 463-700 (1228)
54 cd02008 TPP_IOR_alpha Thiamine 98.0 1.4E-05 3.1E-10 70.7 6.8 62 235-301 49-111 (178)
55 PRK08155 acetolactate synthase 98.0 9.8E-06 2.1E-10 83.5 5.9 62 236-303 418-480 (564)
56 PRK06725 acetolactate synthase 97.9 1.8E-05 3.9E-10 82.0 6.5 61 235-301 420-481 (570)
57 PRK07524 hypothetical protein; 97.9 1.3E-05 2.8E-10 82.1 5.3 61 236-302 406-467 (535)
58 cd02001 TPP_ComE_PpyrDC Thiami 97.9 3.1E-05 6.8E-10 67.8 6.6 58 236-302 41-102 (157)
59 PRK06112 acetolactate synthase 97.9 2E-05 4.3E-10 81.5 5.9 57 236-298 436-492 (578)
60 PRK08266 hypothetical protein; 97.9 2E-05 4.3E-10 80.7 5.8 62 235-302 400-462 (542)
61 PRK06882 acetolactate synthase 97.9 1.9E-05 4.1E-10 81.5 5.7 61 235-301 419-480 (574)
62 TIGR03846 sulfopy_beta sulfopy 97.8 2.1E-05 4.6E-10 70.5 5.0 60 236-302 41-102 (181)
63 cd02006 TPP_Gcl Thiamine pyrop 97.8 2.6E-05 5.5E-10 70.4 5.5 62 235-302 55-117 (202)
64 PF02775 TPP_enzyme_C: Thiamin 97.8 1.2E-05 2.6E-10 68.9 3.0 62 235-302 26-88 (153)
65 cd02003 TPP_IolD Thiamine pyro 97.8 5E-05 1.1E-09 68.9 7.0 62 235-302 46-108 (205)
66 PRK08199 thiamine pyrophosphat 97.8 3.4E-05 7.5E-10 79.4 6.0 61 235-301 413-474 (557)
67 cd02010 TPP_ALS Thiamine pyrop 97.7 5.3E-05 1.2E-09 67.3 4.8 62 235-302 46-108 (177)
68 PRK06163 hypothetical protein; 97.7 5.2E-05 1.1E-09 69.4 4.8 60 236-301 56-117 (202)
69 PRK12474 hypothetical protein; 97.7 7.4E-05 1.6E-09 76.4 6.4 62 235-302 387-449 (518)
70 TIGR00118 acolac_lg acetolacta 97.7 5.8E-05 1.3E-09 77.7 5.6 59 236-300 411-469 (558)
71 cd03371 TPP_PpyrDC Thiamine py 97.6 0.00015 3.2E-09 65.4 7.2 61 236-302 47-109 (188)
72 PRK11865 pyruvate ferredoxin o 97.6 0.00011 2.4E-09 71.4 6.9 70 230-300 62-132 (299)
73 PRK08527 acetolactate synthase 97.6 9.1E-05 2E-09 76.5 6.5 60 236-301 413-473 (563)
74 PRK06546 pyruvate dehydrogenas 97.6 8.4E-05 1.8E-09 77.2 5.7 61 236-302 407-468 (578)
75 PRK07710 acetolactate synthase 97.6 9.5E-05 2.1E-09 76.5 5.7 61 236-302 423-484 (571)
76 cd03375 TPP_OGFOR Thiamine pyr 97.5 0.00013 2.8E-09 65.8 5.4 60 237-302 51-112 (193)
77 PRK11269 glyoxylate carboligas 97.5 0.00012 2.5E-09 76.2 5.6 62 235-302 417-479 (591)
78 cd03376 TPP_PFOR_porB_like Thi 97.5 8.8E-05 1.9E-09 69.2 4.0 60 235-300 60-121 (235)
79 PRK07064 hypothetical protein; 97.5 0.00017 3.8E-09 73.7 6.3 63 234-302 402-465 (544)
80 COG2609 AceE Pyruvate dehydrog 97.5 0.0032 7E-08 67.3 15.5 183 129-321 74-281 (887)
81 cd02009 TPP_SHCHC_synthase Thi 97.4 8.3E-05 1.8E-09 65.8 2.9 58 237-301 51-109 (175)
82 PRK07586 hypothetical protein; 97.4 0.00021 4.6E-09 72.8 5.7 61 236-302 384-445 (514)
83 PRK06154 hypothetical protein; 97.4 0.0002 4.3E-09 74.3 5.6 61 236-302 430-491 (565)
84 CHL00099 ilvB acetohydroxyacid 97.4 0.00021 4.6E-09 74.3 5.5 61 235-301 428-489 (585)
85 PRK09107 acetolactate synthase 97.4 0.00033 7.2E-09 73.1 6.5 61 236-302 429-490 (595)
86 TIGR03393 indolpyr_decarb indo 97.3 0.00023 5E-09 73.1 4.3 61 236-302 403-464 (539)
87 PRK06466 acetolactate synthase 97.3 0.00038 8.3E-09 72.1 5.8 61 235-301 421-482 (574)
88 PRK07525 sulfoacetaldehyde ace 97.3 0.00038 8.3E-09 72.3 5.6 61 235-301 433-494 (588)
89 PRK05778 2-oxoglutarate ferred 97.2 0.00044 9.6E-09 67.2 5.5 114 152-302 10-131 (301)
90 TIGR02418 acolac_catab acetola 97.2 0.00044 9.5E-09 70.9 5.8 60 236-301 407-467 (539)
91 PRK06965 acetolactate synthase 97.2 0.00046 9.9E-09 71.8 5.9 60 236-301 436-496 (587)
92 PRK08979 acetolactate synthase 97.2 0.00046 1E-08 71.5 5.9 61 236-302 420-481 (572)
93 PRK09259 putative oxalyl-CoA d 97.2 0.00058 1.3E-08 70.7 6.6 57 235-298 422-478 (569)
94 PRK09124 pyruvate dehydrogenas 97.2 0.00049 1.1E-08 71.2 6.0 62 235-302 406-468 (574)
95 TIGR01504 glyox_carbo_lig glyo 97.2 0.00045 9.7E-09 72.0 5.5 61 236-302 417-478 (588)
96 cd02018 TPP_PFOR Thiamine pyro 97.2 0.00024 5.2E-09 66.3 3.1 64 236-301 63-129 (237)
97 TIGR03254 oxalate_oxc oxalyl-C 97.2 0.00068 1.5E-08 69.9 6.7 56 236-298 416-471 (554)
98 PLN02573 pyruvate decarboxylas 97.2 0.00034 7.3E-09 72.9 4.4 62 235-302 426-488 (578)
99 PRK07979 acetolactate synthase 97.2 0.00063 1.4E-08 70.5 6.4 60 236-301 420-480 (574)
100 PRK11867 2-oxoglutarate ferred 97.2 0.00054 1.2E-08 66.1 5.2 111 155-302 13-130 (286)
101 TIGR03457 sulphoacet_xsc sulfo 97.2 0.00056 1.2E-08 70.9 5.6 61 236-302 429-490 (579)
102 PRK05858 hypothetical protein; 97.1 0.00076 1.6E-08 69.4 6.4 60 236-301 406-466 (542)
103 PRK11869 2-oxoacid ferredoxin 97.1 0.00066 1.4E-08 65.4 5.3 111 154-301 2-120 (280)
104 PRK07418 acetolactate synthase 97.1 0.00069 1.5E-08 70.9 5.8 61 235-301 432-493 (616)
105 PRK08617 acetolactate synthase 97.1 0.00061 1.3E-08 70.1 5.2 60 236-301 413-473 (552)
106 PRK06048 acetolactate synthase 97.1 0.00075 1.6E-08 69.7 5.7 60 237-302 414-474 (561)
107 COG3961 Pyruvate decarboxylase 97.1 0.00062 1.3E-08 70.4 5.0 69 233-307 407-476 (557)
108 PRK08978 acetolactate synthase 97.1 0.00087 1.9E-08 68.9 6.0 61 236-302 400-461 (548)
109 PRK07282 acetolactate synthase 97.1 0.00067 1.4E-08 70.3 5.2 62 235-302 416-478 (566)
110 PRK07449 2-succinyl-5-enolpyru 97.1 0.00047 1E-08 71.1 4.0 58 237-301 425-483 (568)
111 TIGR02177 PorB_KorB 2-oxoacid: 97.1 0.00084 1.8E-08 64.9 5.4 60 237-302 53-114 (287)
112 PLN02470 acetolactate synthase 97.1 0.00085 1.8E-08 69.8 5.8 60 236-301 425-485 (585)
113 TIGR02720 pyruv_oxi_spxB pyruv 97.0 0.00097 2.1E-08 69.3 5.9 61 236-302 407-468 (575)
114 PRK11866 2-oxoacid ferredoxin 97.0 0.0009 2E-08 64.4 5.3 60 236-301 58-119 (279)
115 PRK08611 pyruvate oxidase; Pro 97.0 0.00083 1.8E-08 69.8 5.3 61 236-302 407-468 (576)
116 TIGR03336 IOR_alpha indolepyru 97.0 0.0015 3.1E-08 68.5 6.8 65 233-302 399-464 (595)
117 PRK08273 thiamine pyrophosphat 97.0 0.00094 2E-08 69.7 5.4 62 236-302 414-481 (597)
118 PRK09628 oorB 2-oxoglutarate-a 97.0 0.0012 2.5E-08 63.5 5.4 59 237-301 68-128 (277)
119 PRK06456 acetolactate synthase 96.9 0.0012 2.6E-08 68.2 5.7 61 236-302 420-481 (572)
120 PRK06457 pyruvate dehydrogenas 96.9 0.001 2.2E-08 68.5 5.1 63 235-302 394-457 (549)
121 COG0028 IlvB Thiamine pyrophos 96.9 0.002 4.3E-08 67.3 6.9 62 235-302 406-468 (550)
122 PRK08322 acetolactate synthase 96.9 0.0016 3.5E-08 66.8 6.0 62 235-302 404-466 (547)
123 PRK06276 acetolactate synthase 96.9 0.0015 3.3E-08 67.9 5.8 61 236-302 418-479 (586)
124 TIGR03394 indol_phenyl_DC indo 96.8 0.0012 2.5E-08 68.2 4.6 61 235-302 401-462 (535)
125 TIGR03297 Ppyr-DeCO2ase phosph 96.7 0.0014 3E-08 65.2 4.1 60 236-301 220-281 (361)
126 PRK07789 acetolactate synthase 96.6 0.0042 9E-08 65.1 6.5 61 236-302 446-507 (612)
127 PF09364 XFP_N: XFP N-terminal 95.8 0.012 2.6E-07 58.9 4.9 86 221-310 124-213 (379)
128 KOG1184 Thiamine pyrophosphate 95.5 0.018 3.8E-07 59.9 4.9 71 233-310 411-482 (561)
129 PLN02980 2-oxoglutarate decarb 94.5 0.048 1E-06 63.8 5.3 61 235-302 757-822 (1655)
130 COG3957 Phosphoketolase [Carbo 93.9 0.08 1.7E-06 57.0 5.2 89 221-313 137-229 (793)
131 KOG0451 Predicted 2-oxoglutara 93.8 0.77 1.7E-05 48.8 11.9 174 126-308 153-372 (913)
132 KOG1185 Thiamine pyrophosphate 92.5 0.36 7.9E-06 50.3 7.1 67 236-308 429-497 (571)
133 COG1013 PorB Pyruvate:ferredox 87.2 1.2 2.6E-05 43.4 5.6 62 233-300 66-129 (294)
134 COG3960 Glyoxylate carboligase 82.8 2.3 4.9E-05 43.1 5.3 92 201-299 375-475 (592)
135 COG1165 MenD 2-succinyl-6-hydr 82.1 17 0.00038 38.6 11.6 163 107-302 306-481 (566)
136 COG0567 SucA 2-oxoglutarate de 82.0 35 0.00076 38.3 14.4 178 123-304 168-374 (906)
137 cd06586 TPP_enzyme_PYR Pyrimid 76.4 5.8 0.00013 33.1 5.2 53 245-300 46-98 (154)
138 cd02991 UAS_ETEA UAS family, E 63.5 9.7 0.00021 31.9 3.7 60 262-323 53-114 (116)
139 COG4231 Indolepyruvate ferredo 58.4 13 0.00029 40.0 4.4 67 231-303 422-488 (640)
140 KOG3384 Selenoprotein [General 54.5 13 0.00029 33.0 3.1 31 107-137 118-148 (154)
141 cd07034 TPP_PYR_PFOR_IOR-alpha 53.8 23 0.0005 30.2 4.5 50 245-298 52-101 (160)
142 PLN02527 aspartate carbamoyltr 45.9 2E+02 0.0044 28.1 10.2 167 125-294 7-185 (306)
143 PF03646 FlaG: FlaG protein; 41.1 30 0.00064 28.2 3.1 34 105-143 66-100 (107)
144 cd07033 TPP_PYR_DXS_TK_like Py 39.5 58 0.0012 28.2 4.8 64 237-306 44-110 (156)
145 KOG4166 Thiamine pyrophosphate 39.4 51 0.0011 34.7 5.0 69 224-298 508-579 (675)
146 cd03377 TPP_PFOR_PNO Thiamine 39.4 39 0.00085 34.2 4.2 40 260-301 152-193 (365)
147 cd07035 TPP_PYR_POX_like Pyrim 39.0 52 0.0011 27.8 4.4 52 244-298 44-96 (155)
148 PRK05724 acetyl-CoA carboxylas 35.9 37 0.0008 33.8 3.4 45 276-320 140-184 (319)
149 cd05009 SIS_GlmS_GlmD_2 SIS (S 33.1 1.2E+02 0.0027 24.9 5.7 48 258-306 61-114 (153)
150 PF01380 SIS: SIS domain SIS d 32.9 1.2E+02 0.0027 24.1 5.6 40 257-298 52-91 (131)
151 PRK12319 acetyl-CoA carboxylas 32.0 54 0.0012 31.5 3.7 31 276-306 87-117 (256)
152 COG3962 Acetolactate synthase 31.7 77 0.0017 33.7 4.9 63 237-305 444-507 (617)
153 cd05008 SIS_GlmS_GlmD_1 SIS (S 31.4 1.2E+02 0.0026 24.4 5.2 41 256-298 44-84 (126)
154 TIGR00513 accA acetyl-CoA carb 30.3 44 0.00096 33.2 2.9 43 277-319 141-183 (316)
155 PLN02820 3-methylcrotonyl-CoA 28.9 60 0.0013 34.7 3.8 40 278-321 392-431 (569)
156 smart00594 UAS UAS domain. 28.6 91 0.002 25.7 4.1 35 262-298 63-97 (122)
157 PF01039 Carboxyl_trans: Carbo 28.3 38 0.00082 35.2 2.1 33 276-308 318-350 (493)
158 PRK11892 pyruvate dehydrogenas 27.1 1.1E+02 0.0024 31.8 5.2 26 277-302 230-263 (464)
159 cd07039 TPP_PYR_POX Pyrimidine 27.1 1.2E+02 0.0025 26.6 4.7 51 245-298 49-100 (164)
160 TIGR01658 EYA-cons_domain eyes 25.8 74 0.0016 31.0 3.4 31 257-294 227-257 (274)
161 cd07037 TPP_PYR_MenD Pyrimidin 25.7 1.1E+02 0.0023 27.1 4.2 50 246-298 47-97 (162)
162 PLN03230 acetyl-coenzyme A car 25.7 64 0.0014 33.5 3.2 46 276-321 210-255 (431)
163 cd00198 vWFA Von Willebrand fa 25.6 2.4E+02 0.0052 22.2 6.0 38 258-295 100-139 (161)
164 TIGR00232 tktlase_bact transke 24.9 1.3E+02 0.0028 32.6 5.4 32 275-306 434-467 (653)
165 COG0825 AccA Acetyl-CoA carbox 24.3 92 0.002 31.0 3.8 43 280-322 143-185 (317)
166 PRK08452 flagellar protein Fla 24.3 77 0.0017 27.4 2.9 43 94-142 72-115 (124)
167 cd05006 SIS_GmhA Phosphoheptos 24.3 2.2E+02 0.0047 24.8 5.9 63 256-324 99-169 (177)
168 PTZ00089 transketolase; Provis 23.8 1.4E+02 0.0029 32.4 5.4 36 270-306 437-474 (661)
169 KOG3445 Mitochondrial/chloropl 23.6 1.5E+02 0.0033 26.3 4.7 38 259-296 24-64 (145)
170 PRK05899 transketolase; Review 23.3 1.3E+02 0.0029 32.0 5.1 64 237-306 372-438 (624)
171 TIGR00315 cdhB CO dehydrogenas 23.1 1.1E+02 0.0024 27.4 3.9 40 256-296 25-64 (162)
172 cd05014 SIS_Kpsf KpsF-like pro 23.1 2.3E+02 0.0049 22.8 5.5 41 256-298 45-85 (128)
173 PF08806 Sep15_SelM: Sep15/Sel 23.1 51 0.0011 26.1 1.5 33 106-138 42-74 (78)
174 PRK13938 phosphoheptose isomer 23.0 2.4E+02 0.0053 25.7 6.2 43 254-298 109-151 (196)
175 cd05007 SIS_Etherase N-acetylm 22.8 1.6E+02 0.0036 27.8 5.2 39 257-297 117-155 (257)
176 cd02958 UAS UAS family; UAS is 22.7 1E+02 0.0022 24.8 3.3 47 273-319 3-50 (114)
177 cd07038 TPP_PYR_PDC_IPDC_like 22.3 1.5E+02 0.0032 25.9 4.4 50 246-298 47-96 (162)
178 cd01450 vWFA_subfamily_ECM Von 22.0 3.4E+02 0.0073 21.9 6.4 40 258-297 102-142 (161)
179 cd06445 ATase The DNA repair p 21.8 69 0.0015 24.9 2.0 18 104-121 47-64 (79)
180 PF00205 TPP_enzyme_M: Thiamin 21.7 48 0.001 27.6 1.2 31 262-292 14-44 (137)
181 PRK07119 2-ketoisovalerate fer 21.5 1.7E+02 0.0036 29.1 5.2 48 243-298 61-108 (352)
182 PF02639 DUF188: Uncharacteriz 21.0 68 0.0015 27.7 2.0 25 278-302 1-25 (130)
183 PLN02683 pyruvate dehydrogenas 20.8 2E+02 0.0043 28.7 5.5 66 238-308 80-154 (356)
184 PRK01713 ornithine carbamoyltr 20.8 2.1E+02 0.0046 28.3 5.7 164 125-295 14-189 (334)
185 PRK08199 thiamine pyrophosphat 20.4 1.4E+02 0.0031 30.9 4.6 49 244-295 56-105 (557)
186 PRK02261 methylaspartate mutas 20.4 5.5E+02 0.012 22.0 7.7 79 197-292 39-117 (137)
187 cd02868 PseudoU_synth_hTruB2_l 20.4 1E+02 0.0022 29.0 3.2 46 112-157 84-140 (226)
188 PRK13030 2-oxoacid ferredoxin 20.1 1.5E+02 0.0033 34.5 5.0 65 233-302 464-528 (1159)
No 1
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.4e-84 Score=615.96 Aligned_cols=237 Identities=62% Similarity=1.043 Sum_probs=233.2
Q ss_pred ccccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 020562 81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160 (324)
Q Consensus 81 ~~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~f 160 (324)
..+|||+|+.||++|+|++++..+.||||||||++|.+++++++|.+++|..+|||++|+++.+||.++|+.||||||+|
T Consensus 37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF 116 (432)
T KOG1182|consen 37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF 116 (432)
T ss_pred hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCcc
Q 020562 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240 (324)
Q Consensus 161 y~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lG 240 (324)
||+++||||+.||+|+||.|+|.||+||||.||+||||++++++++|||||..|.+||||||+||+++++||+++++||.
T Consensus 117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla 196 (432)
T KOG1182|consen 117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA 196 (432)
T ss_pred EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHHHhhhhhcCCC-CEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHH
Q 020562 241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSF 317 (324)
Q Consensus 241 tqlp~AvG~A~A~k~~g~~-~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k 317 (324)
+|+|+|||+|||+|+++++ +|+|||||||++||||||+|||||++++|||||||+|||||||||+++||++|+|+.|
T Consensus 197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~k 274 (432)
T KOG1182|consen 197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVK 274 (432)
T ss_pred hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEe
Confidence 9999999999999977665 8999999999999999999999999999999999999999999999999999999876
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=7.4e-66 Score=501.28 Aligned_cols=214 Identities=38% Similarity=0.609 Sum_probs=204.8
Q ss_pred CceEEeCCCCCcccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-cccCCCchHHHHHHHHhccCCC-C
Q 020562 107 PCFRVLDDNGELIKGSDFQ--QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSAD-D 182 (324)
Q Consensus 107 p~~rvld~~G~~~~~~~~~--~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~-fy~~~~GqEA~~VG~aaAL~~~-D 182 (324)
+.+|++|++|+.+.+.... .+++++++++||.|+++|.||+++..+||||+|+ ||+++.||||++||++++|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 6789999999999876554 7999999999999999999999999999999996 9999999999999999999966 9
Q ss_pred eEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCC-E
Q 020562 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDA-C 261 (324)
Q Consensus 183 ~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~-V 261 (324)
|++|+||+|+++|++|+|+.++|++++|+.+|+||||+||+|++++++|+++++++||+|+|+|+|+|||.|+++++. |
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred EEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHh
Q 020562 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFK 320 (324)
Q Consensus 262 vv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~ 320 (324)
++||||||++|||+||||||||++|+|||||||+||+||||+|.+.|+..+.++.|-.+
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~a 220 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAA 220 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999888877654
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=3.5e-58 Score=449.59 Aligned_cols=194 Identities=26% Similarity=0.417 Sum_probs=189.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHH
Q 020562 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203 (324)
Q Consensus 125 ~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~ 203 (324)
+.+++|++++|||.|+++|.||+++.+++|||+| +|||++.||||++||++++|+++||+|++||+||++|+||+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHH
Q 020562 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA 283 (324)
Q Consensus 204 i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfA 283 (324)
+|+|++|+.+|+++||+||+|++++++||++.+++||+|+|+|+|+|+|.|+++++.+++|+||||+++||+||||||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEecCCccccccccccccCccHHHHH
Q 020562 284 AVMEAPVVFICRNNGWAISTNISEQFRSTAITSFF 318 (324)
Q Consensus 284 a~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~ 318 (324)
++|+|||||||+||+|+||||+++|++.+.++.+-
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~ 219 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG 219 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh
Confidence 99999999999999999999999999998887654
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=3.4e-54 Score=418.25 Aligned_cols=199 Identities=22% Similarity=0.367 Sum_probs=191.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCH
Q 020562 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (324)
Q Consensus 123 ~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l 201 (324)
+.+.+++|+++++||.|+++|.||+++.+++|||+| +|||++.||||++||++.+|+++||+|++||+|+++|+||+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 345689999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcC-------CCCEEEEEeCCCCCccc
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEG 274 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g-------~~~Vvv~~~GDGatSeG 274 (324)
.++|+|+||+.+|+++||+||+|+.+++.++++.++++|.|+|+|+|+|+|.|+++ .+++|+|++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999987 48999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 275 dfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+|||+||+|++|+|||||||+||+|+||||++.|+...+++.+..+|
T Consensus 173 ~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~ 219 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAF 219 (341)
T ss_pred HHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhC
Confidence 99999999999999999999999999999999999888898887765
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=6.8e-54 Score=411.51 Aligned_cols=193 Identities=26% Similarity=0.448 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHH
Q 020562 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207 (324)
Q Consensus 129 ~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q 207 (324)
+|+++++||.|+++|.+|+++.++||||+| +|++++.||||++||++.+|+++||+||+||+|+++|+||++++++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 6899999999999999999999999999999999999999999999999
Q ss_pred HhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcC
Q 020562 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME 287 (324)
Q Consensus 208 ~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~ 287 (324)
++|+.+|+++||+||+|++++++|+++.++++|.|+|+|+|+|+|.|+++.+.+|+|++|||++++|.|||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 288 APVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 288 lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+|+||||+||+|+|+||..+|+...+++.+..+|
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~ 194 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESF 194 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhC
Confidence 9999999999999999999999888888876654
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=2.4e-52 Score=416.66 Aligned_cols=198 Identities=26% Similarity=0.393 Sum_probs=191.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHH
Q 020562 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (324)
Q Consensus 124 ~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~ 202 (324)
.+.+++|+++++|++|+++|.||+++.++++||++ +|+|++.||||++||++++|+++||+|++||+|+++|+||++++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 35789999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCC-------CCEEEEEeCCCCCccch
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-------DACAVAYTGDGGTSEGD 275 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~-------~~Vvv~~~GDGatSeGd 275 (324)
++|+|++|+.+|.++||++++|+.++++|+.+.+++||.|+|+|+|+|+|.|++++ +++|+|++|||++++|+
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 99999999999999999999999999999999999999999999999999999864 88999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|||+||+|++|+|||||||+||+|+||+|...|+..++++.+..+|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~ 285 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAF 285 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhc
Confidence 9999999999999999999999999999999999888899887765
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=8.8e-51 Score=393.92 Aligned_cols=206 Identities=38% Similarity=0.603 Sum_probs=193.9
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCCCCeEec
Q 020562 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILP 186 (324)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~~D~v~~ 186 (324)
|+|||||.+|...++...+.+++|++++|||+|+++|.||+++.++++||+|+|||++.||||++||++++|+++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 68999999999877666678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEe
Q 020562 187 QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 266 (324)
Q Consensus 187 ~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~ 266 (324)
+||+||++|+||+++.++|++++|+.+| +.+ ++++|+++.++++|.|+|+|+|+|+|.|+.+.+++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~~-----~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERG----SWD-----PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcC----CCC-----chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 9999999999999999999999998854 433 4689999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 267 GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 267 GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|||++++|.|||+||+|+.|+|||||||+||+|+|+|+...+++..+++.+..+|
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~ 206 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAY 206 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhC
Confidence 9999999999999999999999999999999999999999888888887776654
No 8
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=2.2e-50 Score=382.43 Aligned_cols=187 Identities=41% Similarity=0.695 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc-cccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcC
Q 020562 135 MYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKA 213 (324)
Q Consensus 135 lYr~Mv~~R~~D~~~~~lqRqGri~-fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~ 213 (324)
+||.|+++|.+|+++.+++|||++. ||+++.||||++||++.+|+++||+|++||+|+++|+||+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEE
Q 020562 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI 293 (324)
Q Consensus 214 d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv 293 (324)
|+++||+||+|++++++|+++.+++||.|+|+|+|+|+|.|+.+.++++||++|||++++|.|||+||+|+.+++|+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccccccccCccHHHHHHhh
Q 020562 294 CRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 294 ~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|+||+|+|++|.+++++..+++.+..++
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~ 188 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAY 188 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhC
Confidence 9999999999999998888888777654
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=3.4e-50 Score=383.81 Aligned_cols=185 Identities=41% Similarity=0.679 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCC
Q 020562 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADD 215 (324)
Q Consensus 136 Yr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~ 215 (324)
||.|+..|..|.++..+++||+.+|++++.||||++||++.+|+++||+|++||+|+.+|+||+++.++|+|++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEe
Q 020562 216 GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (324)
Q Consensus 216 ~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~e 295 (324)
++|++ |.|+.++++++++.++++|.|+|+|+|+|+|.|+++++.|++|+||||+++||+|||+||||++|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 99999 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccccccCccHHHHHHhh
Q 020562 296 NNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 296 NNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||+|+||||.++|++.+.++.+...+
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~ 185 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGY 185 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGT
T ss_pred cCCcccccCccccccccchhhhhhcc
Confidence 99999999999999999988765543
No 10
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2e-48 Score=373.04 Aligned_cols=188 Identities=28% Similarity=0.481 Sum_probs=181.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHH
Q 020562 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (324)
Q Consensus 124 ~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~ 202 (324)
...+++|+++++|++|+++|+||..+-.++++++| ||+|.+.||||++||+-++|++.|.|+.+||+|++.+.||.++.
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~ 132 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVR 132 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHH
Confidence 34789999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHH
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNF 282 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNf 282 (324)
++|+|++|+.+|+++|.+++||+..++ |++..++||.|+|+++|+|+|.|+++++.|++++.||||++||+++||+||
T Consensus 133 ~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM 210 (394)
T KOG0225|consen 133 EVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM 210 (394)
T ss_pred HHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH
Confidence 999999999999999999999999875 999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEecCCccccccccccccCcc
Q 020562 283 AAVMEAPVVFICRNNGWAISTNISEQFRSTA 313 (324)
Q Consensus 283 Aa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~ 313 (324)
|+.|+||+|||||||+|++.|+.++..+...
T Consensus 211 A~LW~LP~IFvCENN~yGMGTs~~Rasa~te 241 (394)
T KOG0225|consen 211 AALWKLPVIFVCENNHYGMGTSAERASASTE 241 (394)
T ss_pred HHHhCCCEEEEEccCCCccCcchhhhhcChH
Confidence 9999999999999999999999998876543
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.9e-33 Score=301.03 Aligned_cols=188 Identities=14% Similarity=0.099 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHh------ccCCCCeEec-CCCchhhHhh--
Q 020562 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA------ALSADDFILP-QYREPGVLLW-- 196 (324)
Q Consensus 126 ~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aa------AL~~~D~v~~-~YRe~g~~l~-- 196 (324)
.+++|+++++|+.|+++|.||+.+...+..++.. +..|||++.+|+.. +|+++|++++ .||+|+..|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 7899999999999999999999999999888765 67999999999988 6668999999 6999999999
Q ss_pred cCCCHHHHHHHHhhCc-------CCCCC----------CCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCC
Q 020562 197 RGYTLQQFANQVFANK-------ADDGK----------GRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (324)
Q Consensus 197 RG~~l~~i~~q~~g~~-------~d~~k----------Gr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~ 259 (324)
+|.|+.++|+|++|+. +|.+| |+++++|+.... ..|+||.+.|+|+|.|+|.++++++
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-----npShleav~Pva~G~A~A~q~~~~~ 336 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-----NPSHLEIVNPVVEGSVRARQDRRGD 336 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-----CccccccccCeehhHHHHHHHhcCC
Confidence 5999999999999997 33333 444455543332 2489999999999999999999888
Q ss_pred ------CEEEEEeCCCCC-ccchHHHHHHHHHHcCCC---EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 260 ------ACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 260 ------~Vvv~~~GDGat-SeGdfhEALNfAa~~~lP---vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
.|+||++||||+ +||.|||+||||++|++| +||||+||+|+||||.+++.+...++++.+.|
T Consensus 337 ~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~ 408 (924)
T PRK09404 337 GQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMV 408 (924)
T ss_pred cccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeec
Confidence 899999999998 799999999999999998 99999999999999999998887787776654
No 12
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=1.6e-33 Score=266.00 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=148.2
Q ss_pred CCCchHHHHHHHHhccCC------CCeEecC-CCchhhHhh--cCCCHHHHHHHHhhCcC---CCCCCCCCCcccCCCC-
Q 020562 163 TTIGEEAINIGSAAALSA------DDFILPQ-YREPGVLLW--RGYTLQQFANQVFANKA---DDGKGRQMPIHYGSKK- 229 (324)
Q Consensus 163 ~~~GqEA~~VG~aaAL~~------~D~v~~~-YRe~g~~l~--RG~~l~~i~~q~~g~~~---d~~kGr~mp~H~~~~~- 229 (324)
+..|+|++++++...+++ +|++++. ||++...|. +|.|+++++.|++|+.+ +.+.||++..|++.+.
T Consensus 16 s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~ 95 (265)
T cd02016 16 GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSD 95 (265)
T ss_pred EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcc
Confidence 589999999999999987 8999999 999999999 99999999999999887 5567999999998776
Q ss_pred ----------CccccccCCccCchhhhhHHHhhhhhcC-----CCCEEEEEeCCCCC-ccchHHHHHHHHHHcCCC---E
Q 020562 230 ----------LNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---V 290 (324)
Q Consensus 230 ----------~~~~~~ss~lGtqlp~AvG~A~A~k~~g-----~~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lP---v 290 (324)
.++.+..|+||+|+|+|+|+|+|.|+++ ++.|+||++||||+ +||.|||+||||++|++| +
T Consensus 96 ~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ 175 (265)
T cd02016 96 RKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGT 175 (265)
T ss_pred cccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCE
Confidence 6788899999999999999999999998 48899999999995 699999999999999999 9
Q ss_pred EEEEecCCccccccccccccCccHHHHHHhh
Q 020562 291 VFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 291 IFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||||+||+|+||||.++|++...++++.+.|
T Consensus 176 ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~ 206 (265)
T cd02016 176 IHIVVNNQIGFTTDPRDSRSSPYCTDVAKMI 206 (265)
T ss_pred EEEEEeCCEEEEecHHHhcccccHHHHHeec
Confidence 9999999999999999999999898887654
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.95 E-value=3.3e-28 Score=250.74 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=151.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccC---CCCeEe--cCCCchhhHh
Q 020562 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALS---ADDFIL--PQYREPGVLL 195 (324)
Q Consensus 122 ~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~---~~D~v~--~~YRe~g~~l 195 (324)
.+...++.++|.++-... |-.-+++++++ |+++++.|+ +.++++..+. |+|+++ +.||+|++.|
T Consensus 10 ~d~~~l~~~~l~~l~~~i--------r~~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l 79 (581)
T PRK12315 10 ADLKKLSLDELEQLASEI--------RTALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKM 79 (581)
T ss_pred HHHhhCCHHHHHHHHHHH--------HHHHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHH
Confidence 344466766666554432 33445556777 499999999 7777777777 899999 9999999999
Q ss_pred hcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch
Q 020562 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (324)
Q Consensus 196 ~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd 275 (324)
.+|.++..++.+++|+.+|+++++.. .| .++ .++++|+++++|+|+|+|.|+++++.+++|++|||+++||.
T Consensus 80 ~~G~~~~~~~~~~~g~~~G~~~~~~s-~~------~~~-~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~ 151 (581)
T PRK12315 80 LTGRKEAFLDPDHYDDVTGYTNPEES-EH------DFF-TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGL 151 (581)
T ss_pred HcCCccchhhHHHcCCCCCCCCCCCC-CC------CCc-CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcch
Confidence 99999999999999999999998873 33 122 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccc---------ccccCccHHHHHHhh
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNIS---------EQFRSTAITSFFFKF 321 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~---------~Q~~~~~Ia~k~~~~ 321 (324)
+|||||+|+.|++|+||||+||+|+||+|+. ++.+..++..+|.+|
T Consensus 152 ~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~ 206 (581)
T PRK12315 152 ALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAM 206 (581)
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhc
Confidence 9999999999999999999999999999985 344455566677654
No 14
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.92 E-value=1e-24 Score=233.61 Aligned_cols=193 Identities=17% Similarity=0.138 Sum_probs=161.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcccccCCCchHHHHHHHH------hccCCCCeEecC-CCchhhHhh
Q 020562 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSA------AALSADDFILPQ-YREPGVLLW 196 (324)
Q Consensus 125 ~~ls~e~ll~lYr~Mv~~R~~D~~~~~lq-RqGri~fy~~~~GqEA~~VG~a------aAL~~~D~v~~~-YRe~g~~l~ 196 (324)
+.+++|+-+++++.++.+-.||+-+-..+ .|.|. +-.|-|....+.- +.+.-+|++++. ||++...|.
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 57899999999999999999998876432 34442 3355666644333 334568999999 999999999
Q ss_pred --cCCCHHHHHHHHhhCcCC-CCCCCCCC-cccCC-----------CCCccccccCCccCchhhhhHHHhhhhhcCC---
Q 020562 197 --RGYTLQQFANQVFANKAD-DGKGRQMP-IHYGS-----------KKLNYITISSPIATQLPQAVGVAYSLKMEKK--- 258 (324)
Q Consensus 197 --RG~~l~~i~~q~~g~~~d-~~kGr~mp-~H~~~-----------~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~--- 258 (324)
+|.|++++++|+.|+..+ .++|+++. .|++. ....+.+..|+|+++.|+|+|.|+|.+++++
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~ 339 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP 339 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence 999999999999998766 34578877 89885 5667788999999999999999999998865
Q ss_pred ---CCEEEEEeCCCCC-ccchHHHHHHHHHHcCCCE---EEEEecCCccccccccccccCccHHHHHHhh
Q 020562 259 ---DACAVAYTGDGGT-SEGDFHAALNFAAVMEAPV---VFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 259 ---~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lPv---IFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+.|+||++||||+ +||.|||+||||++|++|| ||||+||+|+||||.+++.....++++.+.|
T Consensus 340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~y 409 (929)
T TIGR00239 340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMI 409 (929)
T ss_pred cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheec
Confidence 6799999999995 8999999999999999997 9999999999999988888777777765543
No 15
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.1e-20 Score=174.43 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------H
Q 020562 130 EVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------L 194 (324)
Q Consensus 130 e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~ 194 (324)
....++-+....+|.-..+|...+.+|+.+--++.. |-.+|.+...|+ .+|+++.+ .+|++ +
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~--eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~L 81 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVV--EILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATL 81 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHH
Confidence 346677788889999999999999999887777766 778888888753 35788888 57763 4
Q ss_pred hhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCcc
Q 020562 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273 (324)
Q Consensus 195 l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSe 273 (324)
..+|+-+++-+. .|++. |..+|.|... +.+++...+++||+++++|+|+|++.|+++.+.-|++.+|||+..|
T Consensus 82 ae~G~~p~eeL~-~~~~~-----~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~E 155 (243)
T COG3959 82 AEKGYFPEEELE-TFRRI-----GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDE 155 (243)
T ss_pred HHcCCCCHHHHH-HhccC-----CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCccccc
Confidence 568987777776 56665 6678899855 5669999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 274 GDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 274 GdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|..|||+..|+.++| ++|.||+-|+.+++..+++..+.+++++||.+|
T Consensus 156 G~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAF 204 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAF 204 (243)
T ss_pred ccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhc
Confidence 999999999999999 699999999999999999999999999999998
No 16
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.85 E-value=1.4e-20 Score=196.82 Aligned_cols=171 Identities=16% Similarity=0.239 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC--C-------CCeEecCCCchhh------HhhcCC--CHH
Q 020562 140 VTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPGV------LLWRGY--TLQ 202 (324)
Q Consensus 140 v~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~--~-------~D~v~~~YRe~g~------~l~RG~--~l~ 202 (324)
..+|..-..|......|+++.-+++. |...+.....|+ | .|.++.+ .+|+. +...|+ +.+
T Consensus 5 ~~iR~~~~~~~~~a~~GH~g~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 5 NAIRHLAVDAIQKAKSGHPGAPLGAA--PIAEVLWTKFLKFNPTNPKWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred HHHHHHHHHHHHhcCCCCccchhHHH--HHHHHHHHHhhcCCCCCCCCCCCCeEEEE-CccHHHHHHHHHHHcCCCCCHH
Confidence 44666666666767788888777764 555555555564 3 3777776 56774 445785 676
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCCC
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT 271 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGat 271 (324)
++.. |.+. |...|.|... ...++...+++||+++++|+|+|+|.|+.+ .+.+|+|++|||++
T Consensus 82 ~L~~--fr~~-----~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l 154 (653)
T TIGR00232 82 DLKQ--FRQL-----HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCL 154 (653)
T ss_pred HHHh--cccC-----CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccc
Confidence 6653 5443 4445778754 457888899999999999999999999863 47899999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 272 SeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+||.+|||+|+|+.++|| +|+||+||+|+|++|+++++ .++++.||.+|
T Consensus 155 ~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~ 204 (653)
T TIGR00232 155 QEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAY 204 (653)
T ss_pred cccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhc
Confidence 999999999999999999 89999999999999999997 68899999886
No 17
>PRK12754 transketolase; Reviewed
Probab=99.84 E-value=4.4e-20 Score=193.38 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC--C-------CCeEecCCCchhh------HhhcCC--CHH
Q 020562 140 VTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPGV------LLWRGY--TLQ 202 (324)
Q Consensus 140 v~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~--~-------~D~v~~~YRe~g~------~l~RG~--~l~ 202 (324)
..+|..-..+......|++|.-+++. |.+.+-....|+ | .|.++.+ .+|+. +...|+ +++
T Consensus 9 ~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS-~GH~~~~lYa~l~~~G~~~~~e 85 (663)
T PRK12754 9 NAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLNHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPME 85 (663)
T ss_pred HHHHHHHHHHHHhcCCCCcccchHHH--HHHHHHHHHhcCCCccCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCHH
Confidence 44666666666767788888777665 666665555564 3 3887777 57775 345785 777
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCCC
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT 271 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGat 271 (324)
++.. |.+. |...|.|... ...++...+++||+++++|+|+|+|.|+++ .+.+|+|++|||++
T Consensus 86 ~L~~--fr~~-----gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel 158 (663)
T PRK12754 86 ELKN--FRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCM 158 (663)
T ss_pred HHHH--hccC-----CCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchh
Confidence 7653 5554 3345677644 356899999999999999999999999886 37899999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 272 SeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+||.+|||+|+|+.++|| +||||+||+|+|++|+++++ .++++.||.+|
T Consensus 159 ~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~ 208 (663)
T PRK12754 159 MEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 208 (663)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhc
Confidence 999999999999999999 89999999999999999997 68899999886
No 18
>PRK12753 transketolase; Reviewed
Probab=99.82 E-value=1.5e-19 Score=189.42 Aligned_cols=171 Identities=17% Similarity=0.213 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC--C-------CCeEecCCCchhh------HhhcC--CCHH
Q 020562 140 VTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPGV------LLWRG--YTLQ 202 (324)
Q Consensus 140 v~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~--~-------~D~v~~~YRe~g~------~l~RG--~~l~ 202 (324)
..+|..-..+......|+++..+++. |.+.+.....|+ | .|.++.+ .+|+. +...| ++.+
T Consensus 9 ~~iR~~~~~~~~~a~~GH~g~~ls~~--~i~~~Ly~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~e 85 (663)
T PRK12753 9 NAIRALSMDAVQKANSGHPGAPMGMA--DIAEVLWRDFLKHNPTNPTWYDRDRFILS-NGHASMLLYSLLHLTGYDLPIE 85 (663)
T ss_pred HHHHHHHHHHHHhcCCCCchhhHHHH--HHHHHHHHHHhCCCccCCCCCCCCcEEEe-cccHHHHHHHHHHHhCCCCCHH
Confidence 34566555566655678887776664 555555544553 3 4776666 46665 44567 5666
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEeCCCCC
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGT 271 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~GDGat 271 (324)
++.. |.+. |...|.|... ...++...++++|++++.|+|+|+|.|+++. +.+|+|++|||++
T Consensus 86 ~L~~--fr~~-----~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel 158 (663)
T PRK12753 86 ELKN--FRQL-----HSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCL 158 (663)
T ss_pred HHHH--hccC-----CCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCcc
Confidence 6553 5544 3334667643 3578888999999999999999999998753 6899999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 272 SeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+||.+|||+|+|+.++|| +|+||+||+|+|++|++.+. .++++.+|.+|
T Consensus 159 ~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~ 208 (663)
T PRK12753 159 MEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAY 208 (663)
T ss_pred ccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHc
Confidence 999999999999999997 89999999999999999976 67899999876
No 19
>PLN02790 transketolase
Probab=99.82 E-value=1.4e-19 Score=189.30 Aligned_cols=164 Identities=17% Similarity=0.233 Sum_probs=125.7
Q ss_pred HHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcCC---CHHHHHHHH
Q 020562 147 SVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRGY---TLQQFANQV 208 (324)
Q Consensus 147 ~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG~---~l~~i~~q~ 208 (324)
..+......|++|.-+++. |.+.+-....|+ +.|.++.+ .+|+. +...|+ +.+++..
T Consensus 6 ~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~~~~l~~-- 80 (654)
T PLN02790 6 IDAVNKANSGHPGLPMGCA--PMGHVLYDEVMKYNPKNPYWFNRDRFVLS-AGHGCMLQYALLHLAGYDSVQMEDLKQ-- 80 (654)
T ss_pred HHHHHhcCCCcCCchhhHH--HHHHHHHHhhcccCCCCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCCHHHHHH--
Confidence 3344445678887777665 666554444453 46888777 45664 556776 6666653
Q ss_pred hhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhh-----cCC-----CCEEEEEeCCCCCccchHH
Q 020562 209 FANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKM-----EKK-----DACAVAYTGDGGTSEGDFH 277 (324)
Q Consensus 209 ~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~-----~g~-----~~Vvv~~~GDGatSeGdfh 277 (324)
|.+. |...|.|... ..+++...++++|++++.|+|+|+|.|+ +++ +.+|+|++|||+++||.+|
T Consensus 81 ~r~~-----~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~ 155 (654)
T PLN02790 81 FRQW-----GSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISN 155 (654)
T ss_pred hccC-----CCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHH
Confidence 5544 3334567643 3468899999999999999999999995 342 6899999999999999999
Q ss_pred HHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 278 AALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 278 EALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||+|+|+.++|| +|+||+||+|+|++|++.+. .++++.+|.+|
T Consensus 156 EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 199 (654)
T PLN02790 156 EAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEAL 199 (654)
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHc
Confidence 999999999998 99999999999999999876 57788888875
No 20
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.82 E-value=1.8e-19 Score=162.67 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=91.8
Q ss_pred CCCeEecCCCchhh---HhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCC-CccccccCCccCchhhhhHHHhhhhh
Q 020562 180 ADDFILPQYREPGV---LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKM 255 (324)
Q Consensus 180 ~~D~v~~~YRe~g~---~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~-~~~~~~ss~lGtqlp~AvG~A~A~k~ 255 (324)
+.|.++.+ .+|+. +...|. .++ +.. |.+. |. ++.|....+ .++...++++|+++|+|+|+|+|.|+
T Consensus 24 ~rDr~ils-~gH~~~~~~~~~g~-~~~-l~~-~~~~-----~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~ 93 (195)
T cd02007 24 PKDKIIWD-VGHQAYPHKILTGR-RDQ-FHT-LRQY-----GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDL 93 (195)
T ss_pred CCCeEEEe-cccHHHHHHHHHCC-HHH-Hhh-hhcC-----CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHH
Confidence 57888777 45664 334554 222 221 3322 22 555643322 45566899999999999999999999
Q ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 256 ~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
+++++.|+|++|||+.+||.+|||||+|+.+++|+|+||+||+|+|+++++
T Consensus 94 ~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~ 144 (195)
T cd02007 94 KGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG 144 (195)
T ss_pred hCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999976
No 21
>PTZ00089 transketolase; Provisional
Probab=99.80 E-value=8.3e-19 Score=183.73 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcC--CCHH
Q 020562 140 VTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRG--YTLQ 202 (324)
Q Consensus 140 v~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG--~~l~ 202 (324)
..+|.+-..+......|+++.-+++. |.+.+-....|+ +.|.++.+ .+|+. +...| ++.+
T Consensus 11 ~~iR~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~l~~~~~~~~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~~ 87 (661)
T PTZ00089 11 NEIRCLSADLVQKANSGHPGAPMGMA--PIAHILWSEVMKYNPKDPRWINRDRFVLS-NGHASALLYSMLHLTGYDLSME 87 (661)
T ss_pred HHHHHHHHHHHHhcCCCCcchhhHHH--HHHHHHHHHhhcCCCcCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCHH
Confidence 33565555555555678887776665 555544433554 45887766 45664 55677 4666
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEeCCCCC
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGT 271 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~GDGat 271 (324)
++.. |... |...|.|... ...++...++++|++++.|+|+|+|.|+++. +..|+|++|||++
T Consensus 88 ~l~~--fr~~-----~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l 160 (661)
T PTZ00089 88 DLKN--FRQL-----GSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCL 160 (661)
T ss_pred HHHh--cCCC-----CCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccch
Confidence 5543 4443 2233556532 2457777899999999999999999999754 7899999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 272 SeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+||.+|||+|+|+.++|| +|+||+||+|+|++|++.+. .++++.+|.+|
T Consensus 161 ~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 210 (661)
T PTZ00089 161 QEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAY 210 (661)
T ss_pred hhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhc
Confidence 999999999999999997 89999999999999999875 57899998876
No 22
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.79 E-value=5.7e-19 Score=183.65 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=124.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEecCCCchh---hHhh
Q 020562 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLW 196 (324)
Q Consensus 121 ~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~~YRe~g---~~l~ 196 (324)
|.+...++.++|.++-.. ++.+.++. .. ...|+++.-+++. |.+.+ ....++ +.|.++.+ .+|. +++.
T Consensus 7 p~dl~~l~~~~l~~la~~-iR~~~i~~--~~-~~~GH~g~~ls~v--el~~a-L~~~~~~~rDr~i~s-~GH~~Y~~~~~ 78 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE-LRRYLLES--VS-ASGGHLASGLGTV--ELTVA-LHYVFNTPKDQFIWD-VGHQAYPHKLL 78 (617)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHH--Hh-ccCCCcCcchhHH--HHHHH-HHhhCCCCCCcEEEe-cchHHHHHHHH
Confidence 344556777776665433 33344444 33 3678887666665 55543 445666 67988776 4555 4566
Q ss_pred cCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccc-cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch
Q 020562 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI-TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (324)
Q Consensus 197 RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~-~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd 275 (324)
.|. .++ +. .+.+. |. ++.|....+..+. ..++++|++++.|+|+|+|.|+++.+.+++|++|||+++||.
T Consensus 79 ~G~-~~~-l~-~~r~~-----g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~ 149 (617)
T TIGR00204 79 TGR-REK-FS-TLRQK-----KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGM 149 (617)
T ss_pred hCc-HHH-hc-chhhc-----CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccccccc
Confidence 786 233 22 23222 33 6666644444444 367999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQF 309 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~ 309 (324)
+|||||+|+.+++|+||||+||+|+|++|++.++
T Consensus 150 ~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~ 183 (617)
T TIGR00204 150 AFEALNHAGDLKTDMIVILNDNEMSISENVGALS 183 (617)
T ss_pred HHHHHHHHHhcCCCEEEEEECCCcccCCCchHHH
Confidence 9999999999999999999999999999998664
No 23
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.79 E-value=4e-19 Score=164.90 Aligned_cols=140 Identities=18% Similarity=0.257 Sum_probs=120.2
Q ss_pred CchHHHHHHHHhccCC-CCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCch
Q 020562 165 IGEEAINIGSAAALSA-DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243 (324)
Q Consensus 165 ~GqEA~~VG~aaAL~~-~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtql 243 (324)
.||++.++.+...|+. .|++||.||.... | +++++.|+ + ...| +|.|...+.+++...+++||.++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5999999999899988 6999999998762 2 25567765 2 2233 89999888899999999999999
Q ss_pred hhhhHHHhhhhhcCCCCEEEEEeCCCCCccchH---HHHHHHHHHcCCC-EEEEEecCCcccccccccc-ccCccHHHHH
Q 020562 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEAP-VVFICRNNGWAISTNISEQ-FRSTAITSFF 318 (324)
Q Consensus 244 p~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdf---hEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q-~~~~~Ia~k~ 318 (324)
++|+|+| +++.+.+|+|++|||+++||.+ |++.+|+.-.++. |+-|++||+|+|++|+..+ ...+.|+++|
T Consensus 69 s~A~G~a----~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAV----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhh----hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 9999997 4678899999999999999997 9999999999995 8889999999999999966 5678899999
Q ss_pred Hhh
Q 020562 319 FKF 321 (324)
Q Consensus 319 ~~~ 321 (324)
..|
T Consensus 145 ~~y 147 (227)
T cd02011 145 RGY 147 (227)
T ss_pred HhC
Confidence 876
No 24
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.75 E-value=8.7e-18 Score=173.31 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=137.8
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEe
Q 020562 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (324)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~ 185 (324)
|+|.+|+.= -+|.++.+++.++|.++ ...+|..-..|... ..|++|--+++. |.+.+-. ..++ +.|.++
T Consensus 2 ~~~~~~~~~---~~~~~~~~~~~~~l~~~---a~~iR~~~~~~~~~-~~gH~g~~ls~~--~i~~~L~-~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLDTI---NSPADLKKLSEEELPQL---ADEIREFLIDVVSK-TGGHLGSNLGVV--ELTVALH-YVFDTPKDRII 71 (580)
T ss_pred CCCchhhcc---CCHHHHhcCCHHHHHHH---HHHHHHHHHHHHHh-cCCCcCCCccHH--HHHHHHH-HhcCCCCccEE
Confidence 445555432 33455667787776655 33355544444443 588888777775 6655433 3554 568888
Q ss_pred cCCCchhh---HhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCC-CccccccCCccCchhhhhHHHhhhhhc-CCCC
Q 020562 186 PQYREPGV---LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME-KKDA 260 (324)
Q Consensus 186 ~~YRe~g~---~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~-~~~~~~ss~lGtqlp~AvG~A~A~k~~-g~~~ 260 (324)
.+ .+|+. +...|. .+++. -|.+. |. .+.|....+ .++...++++|+++|.|+|+|+|.|++ +.++
T Consensus 72 ls-~GH~~y~~~~~~g~-~~~l~--~~~~~-----~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~ 141 (580)
T PRK05444 72 WD-VGHQAYPHKILTGR-RDRFD--TLRQK-----GG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDR 141 (580)
T ss_pred Ee-ccHHHHHHHHHhCc-HHHhc--CcccC-----CC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCC
Confidence 77 56664 344564 23222 13332 22 456665433 677788999999999999999999998 5788
Q ss_pred EEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccccccccc---ccCccHHHHHHhh
Q 020562 261 CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ---FRSTAITSFFFKF 321 (324)
Q Consensus 261 Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q---~~~~~Ia~k~~~~ 321 (324)
.++|++|||+.+||.+||||++|+.+++|+|+|++||+|+|++++..+ .....+..+|.+|
T Consensus 142 ~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~ 205 (580)
T PRK05444 142 KVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEEL 205 (580)
T ss_pred eEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHc
Confidence 999999999999999999999999999999999999999999999765 2335566677654
No 25
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.75 E-value=2.5e-17 Score=153.55 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcCC-CHHHHH
Q 020562 142 LQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRGY-TLQQFA 205 (324)
Q Consensus 142 ~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG~-~l~~i~ 205 (324)
+|..-..+......|+++..++.. |...+.....|+ +.|.++.+ ..|+. +...|+ +.+++.
T Consensus 3 ~R~~~~~~~~~~~~gh~g~~~s~~--~i~~~L~~~~~~~~~~~~~~~~rd~~v~s-~gH~~~~~ya~l~~~g~~~~~~l~ 79 (255)
T cd02012 3 IRRLSIDMVQKAGSGHPGGSLSAA--DILAVLYFKVLKYDPADPKWPNRDRFVLS-KGHASPALYAVLALAGYLPEEDLK 79 (255)
T ss_pred HHHHHHHHHHhcCCCCcCccHHHH--HHHHHHHHHHhCcCCcCCCCCCCCeEEEc-CCcHHHHHHHHHHHcCCCCHHHHH
Confidence 444444455444567776665554 555555544543 24665554 34543 345675 444443
Q ss_pred HHHhhCcCCCCCCCCCCcccCCCC-CccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHH
Q 020562 206 NQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAA 284 (324)
Q Consensus 206 ~q~~g~~~d~~kGr~mp~H~~~~~-~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa 284 (324)
. |... |..++.|..... .++...++++|.++|.|+|+|+|.|+.+.++.|+|++|||+..||.+||++++|+
T Consensus 80 ~--~~~~-----gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~ 152 (255)
T cd02012 80 T--FRQL-----GSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAG 152 (255)
T ss_pred H--hccc-----CCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHH
Confidence 2 4333 334667765433 3778888999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 285 VMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 285 ~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
.+++| +|+|++||+|+|+.++..+...++++.+|.+|
T Consensus 153 ~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~ 190 (255)
T cd02012 153 HYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAF 190 (255)
T ss_pred HcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHc
Confidence 99997 99999999999999998888888899998875
No 26
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.71 E-value=8.7e-17 Score=168.96 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=117.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEecCCCchhh---Hhh
Q 020562 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPGV---LLW 196 (324)
Q Consensus 121 ~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~~YRe~g~---~l~ 196 (324)
|.+...++.++|.++-+. +|..-..+... ..|+++--+++. |.+.+- ...|+ |+|.++.+ .+|.. ++.
T Consensus 40 p~dlk~l~~~~l~~la~~---iR~~ii~~~~~-~~GH~g~~Ls~v--el~~aL-~~~~~~p~Dr~i~s-~GH~ay~~~~l 111 (677)
T PLN02582 40 PIHMKNLSVKELKQLADE---LRSDVIFNVSK-TGGHLGSSLGVV--ELTVAL-HYVFNAPQDKILWD-VGHQSYPHKIL 111 (677)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHHHHHHHHh-cCCCcCccccHH--HHHHHH-HHhhCCCCCeEEEE-CcchHHHHHHH
Confidence 344557888887765443 55544444432 258887666665 665443 34564 78998886 45554 344
Q ss_pred cCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCC-CccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch
Q 020562 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (324)
Q Consensus 197 RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~-~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd 275 (324)
.|. .++ +. -+.+. |. ++.|....+ ++....++++|++++.|+|+|+|.|+++++++++|++|||+++||.
T Consensus 112 ~gr-~~~-l~-~~r~~-----g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~ 182 (677)
T PLN02582 112 TGR-RDK-MH-TMRQT-----NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQ 182 (677)
T ss_pred Hcc-HHH-hc-ccccC-----CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhh
Confidence 454 222 21 12222 22 555653322 5666788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNI 305 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~ 305 (324)
+|||||+|+.+++|+|+||+||+ .||+|+
T Consensus 183 ~~Ealn~a~~~~~~li~iv~~N~-~~s~~~ 211 (677)
T PLN02582 183 AYEAMNNAGYLDSDMIVILNDNK-QVSLPT 211 (677)
T ss_pred HHHHHHHHHhhCcCEEEEEECCC-Cccccc
Confidence 99999999999999999999999 445543
No 27
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.71 E-value=2.2e-16 Score=156.18 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHc------CCcccccCCCchHHHHHHHHhccCC------CCeEecCCCchhh------HhhcCC-C
Q 020562 140 VTLQVMDSVLYEAQRQ------GRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPGV------LLWRGY-T 200 (324)
Q Consensus 140 v~~R~~D~~~~~lqRq------Gri~fy~~~~GqEA~~VG~aaAL~~------~D~v~~~YRe~g~------~l~RG~-~ 200 (324)
..+|..-..|...... |+++..+++. |.+.+.....|+. .|.|+ + .+|+. +..+|+ +
T Consensus 9 ~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~a--dI~~aLy~~~l~~~p~~~~RDRvl-S-kGHas~~lYA~L~l~G~~~ 84 (386)
T cd02017 9 SLIRWNAMAMVHRANKKDLGIGGHIATFASAA--TLYEVGFNHFFRARGEGGGGDLVY-F-QGHASPGIYARAFLEGRLT 84 (386)
T ss_pred HHHHHHHHHHHHHcCCCCcccCCCCCcchhHH--HHHHHHHHHhcCCCCCCCCCCEEE-e-CCcccHHHHHHHHHcCCCC
Confidence 3444444444444444 6777666665 5665555556775 78855 4 67774 456784 5
Q ss_pred HHHHHHHHhhCcCCCCCCCCCCcccCCC--CCccccccCCccCchhhhhHHHhhhhh-------cCCCCEEEEEeCCCCC
Q 020562 201 LQQFANQVFANKADDGKGRQMPIHYGSK--KLNYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGT 271 (324)
Q Consensus 201 l~~i~~q~~g~~~d~~kGr~mp~H~~~~--~~~~~~~ss~lGtqlp~AvG~A~A~k~-------~g~~~Vvv~~~GDGat 271 (324)
.+++.. |.+..+. ...|.|.... ..++...+++||.+++.|+|+|+|.|+ ++.+.-|+|++|||+.
T Consensus 85 ~edL~~--fr~~gs~---p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl 159 (386)
T cd02017 85 EEQLDN--FRQEVGG---GGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEM 159 (386)
T ss_pred HHHHHh--hccCCCC---CCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEccccc
Confidence 655443 4443221 1234443221 224788899999999999999999998 5678889999999999
Q ss_pred ccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccc-ccCccHHHHHHhh
Q 020562 272 SEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRSTAITSFFFKF 321 (324)
Q Consensus 272 SeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q-~~~~~Ia~k~~~~ 321 (324)
.||..|||+++|+.++| ++|.|+++|+++|+.++++. ...++++.||.+|
T Consensus 160 ~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~Af 211 (386)
T cd02017 160 DEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGA 211 (386)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhc
Confidence 99999999999999999 69999999999999999986 4778999999987
No 28
>PRK05899 transketolase; Reviewed
Probab=99.70 E-value=2.1e-16 Score=164.32 Aligned_cols=176 Identities=20% Similarity=0.259 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcCC
Q 020562 135 MYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRGY 199 (324)
Q Consensus 135 lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG~ 199 (324)
+-+....+|..-..+......|+++.-+++. |...+.....|+ +.|.++.+ .+|+. +..+|+
T Consensus 8 l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~--~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s-~GH~~~~~Ya~l~~~G~ 84 (624)
T PRK05899 8 LQLLANAIRVLSIDAVQKANSGHPGMPMGAA--DIAYVLWTRFLRHDPKNPKWPNRDRFVLS-AGHGSMLLYSLLHLAGY 84 (624)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccchHHHH--HHHHHHHHHhhcCCCCCCCCCCCCEEEEE-ChhHHHHHHHHHHHcCC
Confidence 3344555677666666666778887766665 666554444554 35888777 46665 566786
Q ss_pred --CHHHHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEe
Q 020562 200 --TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYT 266 (324)
Q Consensus 200 --~l~~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~ 266 (324)
+.+++.. +... |...+.|... ...++...++++|+++|.|+|+|+|.|+++. ++.|+|++
T Consensus 85 ~~~~~~l~~--~~~~-----~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~ 157 (624)
T PRK05899 85 DLSIDDLKN--FRQL-----GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLC 157 (624)
T ss_pred CCCHHHHHH--hcCC-----CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEE
Confidence 5555443 3333 2224556543 2356777899999999999999999998877 88999999
Q ss_pred CCCCCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 267 GDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 267 GDGatSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|||+..+|.+||||++|+.++|| +|+|++||+|+|++++.... ..+++.+|.+|
T Consensus 158 GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~~-~~~~~~~~~a~ 212 (624)
T PRK05899 158 GDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGWF-TEDVKKRFEAY 212 (624)
T ss_pred CcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccccc-cccHHHHhccC
Confidence 99999999999999999999998 99999999999999988543 56788887765
No 29
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.68 E-value=6.6e-17 Score=157.40 Aligned_cols=172 Identities=22% Similarity=0.245 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCC---------CCeEecCCCchhhH------hhcCC--CH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA---------DDFILPQYREPGVL------LWRGY--TL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~---------~D~v~~~YRe~g~~------l~RG~--~l 201 (324)
.-.+|..-..|......|++|..++++ |.+.+.....|+. .|.++.+ .+|+.. ..+|+ ++
T Consensus 5 a~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 5 ANTIRKLILDMVQKAGSGHPGSSLSAA--DILYALYFKVLRYDPKNPKWPNRDRFVLS-KGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHT-S-SHHHHHHH--HHHHHHHHHT-BBBTTBTTSTTS-EEEES-SGGGHHHHHHHHHHTTSSS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHH--HHHHHHHhhccccCCccccCCCCCcEEEe-ccchhHHHHHHHHHhcCCCCH
Confidence 345677777777777899998777765 6666666666753 5888888 678743 24675 55
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccC-CCCCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCC
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG 270 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~-~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGa 270 (324)
+++.. |.+. |...|.|.. ....++...+++||.+++.|||+|+|.|+.+ .+..|+|++|||.
T Consensus 82 ~~L~~--fr~~-----~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGe 154 (332)
T PF00456_consen 82 EDLKT--FRQL-----GSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGE 154 (332)
T ss_dssp HHHTT--TTST-----TSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHH
T ss_pred HHHHH--hccC-----CCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcc
Confidence 55543 4433 455677875 5677888899999999999999999998743 3678999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 271 tSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
..||..|||+.+|+.++|. +|+|+++|+.+|+.+++... .++++.||.+|
T Consensus 155 l~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 155 LQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 9999999999999999995 99999999999999998765 46789999886
No 30
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.67 E-value=1.2e-16 Score=153.81 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=102.7
Q ss_pred CCCchhhHhhcCCCHH-HHHHHHhhCcC------CCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCC
Q 020562 187 QYREPGVLLWRGYTLQ-QFANQVFANKA------DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (324)
Q Consensus 187 ~YRe~g~~l~RG~~l~-~i~~q~~g~~~------d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~ 259 (324)
-||+|++...+|.++. .++.+++|+.+ |+..+++++.|+... ++..+++++|.++++|+|+++|+|+++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999999998 89999998887 788887777776654 77788999999999999999999998876
Q ss_pred CEEEE-EeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccccc
Q 020562 260 ACAVA-YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN 304 (324)
Q Consensus 260 ~Vvv~-~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP 304 (324)
.++|+ ++|||++.++.| |+||+|+.+++||+|||+||+|.++|-
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TG 136 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTG 136 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCC
Confidence 66555 999999999997 999999999999999999999999875
No 31
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.59 E-value=2.1e-14 Score=150.34 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEecCCCchh---hHhh
Q 020562 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLW 196 (324)
Q Consensus 121 ~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~~YRe~g---~~l~ 196 (324)
|.+..+++.++|.++ ...+|..-..+.... .|+++.-+++. |.+. +....++ |.|.++.+ -+|+ +++.
T Consensus 15 p~dl~~l~~~~l~~~---a~~iR~~ii~~~~~~-~GH~g~~ls~v--el~~-aL~~~~~~prDr~i~s-~GH~~Y~~~~l 86 (641)
T PRK12571 15 PADLRALSDAELEQL---ADELRAEVISAVSET-GGHLGSSLGVV--ELTV-ALHAVFNTPKDKLVWD-VGHQCYPHKIL 86 (641)
T ss_pred HHHHHhCCHHHHHHH---HHHHHHHHHHHHHHh-CCCcCCCchHH--HHHH-HHHHhcCCCCCcEEEE-CchHHHHHHHH
Confidence 445567887776665 333444444444332 58887777665 5543 3444554 67988776 3555 3455
Q ss_pred cCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCC-ccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch
Q 020562 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (324)
Q Consensus 197 RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~-~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd 275 (324)
.|. .++ +. -+.+. |. ++.|....+. .-.-..++-+++++.|+|+|+|.|+.+.++.++|++|||+.+||.
T Consensus 87 ~g~-~~~-l~-~~r~~-----~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~ 157 (641)
T PRK12571 87 TGR-RDR-FR-TLRQK-----GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGM 157 (641)
T ss_pred hCC-HHH-Hh-hhhhC-----CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcch
Confidence 664 333 22 23332 21 3344332221 111123344677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
+|||+|+|+.+++|+|+|++||+|+|++++.
T Consensus 158 ~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~ 188 (641)
T PRK12571 158 AYEALNNAGAADRRLIVILNDNEMSIAPPVG 188 (641)
T ss_pred HHHHHHHHHHhCCCEEEEEECCCeeecCCcc
Confidence 9999999999999999999999999999995
No 32
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=5.2e-14 Score=144.47 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC--C-------CCeEecCCCchhh------HhhcCC
Q 020562 135 MYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPGV------LLWRGY 199 (324)
Q Consensus 135 lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~--~-------~D~v~~~YRe~g~------~l~RG~ 199 (324)
+-..|-.+|.....+...-..|+.++.++.. |.+.|-....|+ + .|.++.+ .+|+. +..-|+
T Consensus 10 ~~~~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~ 86 (632)
T KOG0523|consen 10 LKDAVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGY 86 (632)
T ss_pred hHHHhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhcc
Confidence 3346888999999999999999998887765 677777776664 2 4677776 46664 334575
Q ss_pred CHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCC-CCEEEEEeCCCCCccchHHH
Q 020562 200 TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHA 278 (324)
Q Consensus 200 ~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~-~~Vvv~~~GDGatSeGdfhE 278 (324)
.-.+-|.++.-.. ..-|.|.-.+..++.-.++++|++|..|+|+||+.|+.++ ++-|+|++|||+.+||..||
T Consensus 87 ~~~edl~~~Rq~~------s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~E 160 (632)
T KOG0523|consen 87 DREEDLKNFRQIG------SDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWE 160 (632)
T ss_pred CcHHHHHHHHhhC------CCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHH
Confidence 5554554444432 3345676655556666789999999999999999999988 99999999999999999999
Q ss_pred HHHHHHHcCC-CEEEEEecCCccccccccccccCccHHH-HHHhh
Q 020562 279 ALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSTAITS-FFFKF 321 (324)
Q Consensus 279 ALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~~~~Ia~-k~~~~ 321 (324)
|+++|+.|+| .+|+|.+||+..|+++++..+..+ |.+ +|.+|
T Consensus 161 A~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~d-V~~~r~ea~ 204 (632)
T KOG0523|consen 161 AMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDED-VYQLRFEAF 204 (632)
T ss_pred HHhhhhhcccCCEEEEEccccccCCCCCccccccc-HHHHHHHHh
Confidence 9999999999 599999999999999999997655 555 77654
No 33
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.54 E-value=1.2e-13 Score=148.54 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------cCCcccccCCCchHHHHHHHHhccCC------CCeEecCCCchhh-----
Q 020562 131 VAVKMYSHMVTLQVMDSVLYEAQR------QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPGV----- 193 (324)
Q Consensus 131 ~ll~lYr~Mv~~R~~D~~~~~lqR------qGri~fy~~~~GqEA~~VG~aaAL~~------~D~v~~~YRe~g~----- 193 (324)
++.+-....++...++.. .... .|+++.++++. |...|+....|+. +|.|+.+ +|+.
T Consensus 73 ~~~~~~a~~iR~~a~~mv--~~A~~~~~~~gGH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA 146 (889)
T TIGR03186 73 QLEERLAAILRWNALAMV--VRANRAYGELGGHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYA 146 (889)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcccCCCCCCCCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHH
Confidence 444444555444444443 3333 37888777775 7777777777874 6877766 5663
Q ss_pred -HhhcC-CCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcC-------CCCEEEE
Q 020562 194 -LLWRG-YTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVA 264 (324)
Q Consensus 194 -~l~RG-~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g-------~~~Vvv~ 264 (324)
+...| ++.+++.. |.+..+ ..|-+.+.|.......+...+++||.+++.|+|+|++.|+.+ .+.-|+|
T Consensus 147 ~l~l~G~l~~e~L~~--fRq~~~-~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~ 223 (889)
T TIGR03186 147 RAFLEGFLSDAQLAH--YRQEIA-GPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWG 223 (889)
T ss_pred HHHHcCCCCHHHHHH--hcCCCC-CCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEE
Confidence 34578 46665543 444321 123333335433122466789999999999999999988432 3678999
Q ss_pred EeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc-CccHHHHHHhh
Q 020562 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-STAITSFFFKF 321 (324)
Q Consensus 265 ~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~-~~~Ia~k~~~~ 321 (324)
++|||++.||..|||+.+|+.++| .+|+|+++|+.+++.|++.... .+++..||.+|
T Consensus 224 llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~ 282 (889)
T TIGR03186 224 FFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGA 282 (889)
T ss_pred EEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhC
Confidence 999999999999999999999999 6999999999999999998544 67899999876
No 34
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.53 E-value=1.9e-13 Score=146.10 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------cCCcccccCCCchHHHHHHHHhccCC------CCeEecCCCchhh---
Q 020562 129 KEVAVKMYSHMVTLQVMDSVLYEAQR------QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPGV--- 193 (324)
Q Consensus 129 ~e~ll~lYr~Mv~~R~~D~~~~~lqR------qGri~fy~~~~GqEA~~VG~aaAL~~------~D~v~~~YRe~g~--- 193 (324)
+.++.+..+..++-..++.. .... .|+++.++++. |...++....|+. .|.|+. .+|+.
T Consensus 71 d~~~e~~i~~~iR~~ai~MV--~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~l 144 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMV--LRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGI 144 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHH
Confidence 34455555555554445444 3333 47887777775 6777777777764 687666 46774
Q ss_pred ---HhhcCC-CHHHHHHHHhhCcCCCCCCCCCCcccCCC-CC-ccccccCCccCchhhhhHHHhhhhh-------cCCCC
Q 020562 194 ---LLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KL-NYITISSPIATQLPQAVGVAYSLKM-------EKKDA 260 (324)
Q Consensus 194 ---~l~RG~-~l~~i~~q~~g~~~d~~kGr~mp~H~~~~-~~-~~~~~ss~lGtqlp~AvG~A~A~k~-------~g~~~ 260 (324)
+...|+ +.+++- . |.+..+ |...+.|.... .+ ++...++++|.+++.|+|+|++.|+ ++.+.
T Consensus 145 YA~L~l~G~ls~e~L~-~-FRq~~~---g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~ 219 (885)
T TIGR00759 145 YARAFLEGRLTEEQLD-N-FRQEVQ---GDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQ 219 (885)
T ss_pred HHHHHHcCCCCHHHHH-H-hcCCCC---CCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 445785 555544 3 544322 33344443221 23 3677899999999999999999997 66788
Q ss_pred EEEEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc-CccHHHHHHhh
Q 020562 261 CAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-STAITSFFFKF 321 (324)
Q Consensus 261 Vvv~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~-~~~Ia~k~~~~ 321 (324)
-|+|++|||++.||..|||+.+|+.++| ++|+|+++|+.+++.|++...+ .+.+..+|.++
T Consensus 220 rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~ 282 (885)
T TIGR00759 220 KVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGA 282 (885)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhc
Confidence 9999999999999999999999999999 6999999999999999998655 57899999875
No 35
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.53 E-value=1.3e-13 Score=144.39 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=124.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEecCCCchhhH---hhc
Q 020562 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPGVL---LWR 197 (324)
Q Consensus 122 ~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~~YRe~g~~---l~R 197 (324)
.++..++.++|.++-+. +|..-..+.... .|+++--+++. |.+. +....|+ |+|.++-+ .+|..+ +..
T Consensus 74 ~~~k~l~~~~L~~la~e---iR~~ii~~~~~~-~GHlgssLs~v--El~~-aL~~vf~~p~DriI~s-~GHqaya~~~lt 145 (641)
T PLN02234 74 MHMKNLSIKELKVLSDE---LRSDVIFNVSKT-GGHLGSNLGVV--ELTV-ALHYIFNTPHDKILWD-VGHQSYPHKILT 145 (641)
T ss_pred HHHhhCCHHHHHHHHHH---HHHHHHHHHhhc-CCCccccchHH--HHHH-HHHHhcCCCCCeEEEe-cchhHHHHHHHH
Confidence 33456677777655443 454333344333 78887666665 6554 3444564 78988887 566643 222
Q ss_pred CCCHHHHHHHHhhCcCCCCCCCCCCcccCCCC-CccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchH
Q 020562 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (324)
Q Consensus 198 G~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~-~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdf 276 (324)
|. .++ |. -+... |. ++.|....+ .++...+|++|+.++.|+|+|+|.|+++.++-|+|++|||+.+||..
T Consensus 146 gr-~~~-l~-t~r~~-----gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~ 216 (641)
T PLN02234 146 GR-RGK-MK-TIRQT-----NG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQA 216 (641)
T ss_pred hh-hhh-hc-ccccC-----CC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHH
Confidence 32 111 11 12221 22 555654433 46777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcc------ccccccccccC---------------ccHHHHHHhh
Q 020562 277 HAALNFAAVMEAPVVFICRNNGWA------ISTNISEQFRS---------------TAITSFFFKF 321 (324)
Q Consensus 277 hEALNfAa~~~lPvIFv~eNNgyA------IStP~~~Q~~~---------------~~Ia~k~~~~ 321 (324)
|||||+|+.++-++|.|+++|+.. ++.+++..... +.+..+|.+|
T Consensus 217 wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~f 282 (641)
T PLN02234 217 YEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEEL 282 (641)
T ss_pred HHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHc
Confidence 999999998787899999999994 55555543322 3567777765
No 36
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.47 E-value=9.9e-13 Score=141.74 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcccccCCCchHHHHHHHHhccC------CCCeEecCCCchhh---
Q 020562 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQ------GRFSFYLTTIGEEAINIGSAAALS------ADDFILPQYREPGV--- 193 (324)
Q Consensus 129 ~e~ll~lYr~Mv~~R~~D~~~~~lqRq------Gri~fy~~~~GqEA~~VG~aaAL~------~~D~v~~~YRe~g~--- 193 (324)
+.++.+-.+..++-..++ |...... |+++.++++. +...|+....|+ ..|.|+.+ +|+.
T Consensus 85 d~~~e~~i~~~iR~~a~~--mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~l 158 (896)
T PRK13012 85 DLALEERLAAIIRWNALA--MVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYFQ--PHSAPGI 158 (896)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEEC--cchHHHH
Confidence 334444444444444444 4444444 7787777765 667777777787 57877665 6764
Q ss_pred ---HhhcC-CCHHHHHHHHhhCcCCCCCCCCCCcccCCCC-C-ccccccCCccCchhhhhHHHhhhhh-------cCCCC
Q 020562 194 ---LLWRG-YTLQQFANQVFANKADDGKGRQMPIHYGSKK-L-NYITISSPIATQLPQAVGVAYSLKM-------EKKDA 260 (324)
Q Consensus 194 ---~l~RG-~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~-~-~~~~~ss~lGtqlp~AvG~A~A~k~-------~g~~~ 260 (324)
+...| ++.+++.. |.+..+ |...+.|..... + .+...++++|.+++.|+|.|++.|| +..+.
T Consensus 159 YA~~~l~G~l~~e~L~~--fR~~~~---~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~ 233 (896)
T PRK13012 159 YARAFLEGRLSEEQLDH--FRQEIG---GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGR 233 (896)
T ss_pred HHHHHHcCCCCHHHHHH--hcCCCC---CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCC
Confidence 44567 56666543 544422 334455543222 2 3566889999999999999999993 55678
Q ss_pred EEEEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc-CccHHHHHHhh
Q 020562 261 CAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-STAITSFFFKF 321 (324)
Q Consensus 261 Vvv~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~-~~~Ia~k~~~~ 321 (324)
-|+|++|||++.||..|||+.+|+.++| ++||||++|+.+++.|+....+ .+.+..+|.+|
T Consensus 234 ~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~ 296 (896)
T PRK13012 234 KVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGA 296 (896)
T ss_pred eEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhC
Confidence 8999999999999999999999999999 6999999999999999998655 57899999876
No 37
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.42 E-value=5e-12 Score=136.18 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcccccCCCchHHHHHHHHhccCC------CCeEecCCCchhh-----
Q 020562 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPGV----- 193 (324)
Q Consensus 129 ~e~ll~lYr~Mv~~R~~D~~~~~lqRq----Gri~fy~~~~GqEA~~VG~aaAL~~------~D~v~~~YRe~g~----- 193 (324)
++.+.+..+..++...++.....-..- |+++.++++. +-..|+....|+. +|.|+.+ .|+.
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA 152 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSA--TLYEVGFNHFFRAPNEPHGGDLVFFQ--GHASPGIYA 152 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHH--HHHHHHHHhhCCCCCCCCCCCEEEEC--chHHHHHHH
Confidence 455666666666666666554332211 7777776664 6667777777874 6877754 6774
Q ss_pred -HhhcC-CCHHHHHHHHhhCcCCCCCCCCCCcccCCCC-C-ccccccCCccCchhhhhHHHhhhhh-------cCCCCEE
Q 020562 194 -LLWRG-YTLQQFANQVFANKADDGKGRQMPIHYGSKK-L-NYITISSPIATQLPQAVGVAYSLKM-------EKKDACA 262 (324)
Q Consensus 194 -~l~RG-~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~-~-~~~~~ss~lGtqlp~AvG~A~A~k~-------~g~~~Vv 262 (324)
+...| ++.+++.+ |.+. ..|..++.|..... + .+...++++|.+++.|+|.|++.|+ ++.+.-|
T Consensus 153 ~~~l~G~l~~e~L~~--fR~~---~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv 227 (891)
T PRK09405 153 RAFLEGRLTEEQLDN--FRQE---VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKV 227 (891)
T ss_pred HHHHcCCCCHHHHHH--hcCC---CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceE
Confidence 44567 56665543 4444 22444555543321 2 3455689999999999999999994 5567899
Q ss_pred EEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc-CccHHHHHHhh
Q 020562 263 VAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-STAITSFFFKF 321 (324)
Q Consensus 263 v~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~-~~~Ia~k~~~~ 321 (324)
+|++|||++.||..|||+.+|+.++| ++|||++.|+.+++.|+....+ .+.+..+|.+|
T Consensus 228 ~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~ 288 (891)
T PRK09405 228 WAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGA 288 (891)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhC
Confidence 99999999999999999999999999 6999999999999999997544 67899999875
No 38
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.3e-10 Score=120.65 Aligned_cols=172 Identities=19% Similarity=0.265 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC--C-------CCeEecCCCchhhHh------hcC--CCH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPGVLL------WRG--YTL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~--~-------~D~v~~~YRe~g~~l------~RG--~~l 201 (324)
.-.+|.+-..+.+....|+-|.-|.+. +.+.|-....|+ | .|.++.+- +||.+| .-| +++
T Consensus 10 ~naiR~Ls~davqkAnSGHPG~pmG~A--~ia~~L~~~~l~~nP~nP~W~nRDRFVLSa-GHgSmllYsllhl~Gy~ls~ 86 (663)
T COG0021 10 ANAIRFLSMDAVQKANSGHPGAPMGAA--DIAYVLWTRFLKHNPDNPKWINRDRFVLSA-GHGSMLLYSLLHLTGYDLSL 86 (663)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCccHH--HHHHHHHHHHhcCCCCCCCCCCCccEEecC-CchhHHHHHHHHHccCCCCH
Confidence 345777777778888889887777654 445555555553 2 47777773 787543 235 577
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccC-CCCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEeCCCC
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGG 270 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~-~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~GDGa 270 (324)
+++.+ |-.. |..-|.|.- ....++...++|||++++.|||+|+|.|+... |.-|+|++|||-
T Consensus 87 edLk~--FRQ~-----~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGc 159 (663)
T COG0021 87 EDLKN--FRQL-----GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGC 159 (663)
T ss_pred HHHHh--hccC-----CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCch
Confidence 77764 3222 333477874 44678999999999999999999999986432 458999999999
Q ss_pred CccchHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 271 TSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 271 tSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
..||-.|||..+|++++| .+|.+.++|+.+|+.+++..+ .++++.||.++
T Consensus 160 lmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAy 210 (663)
T COG0021 160 LMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAY 210 (663)
T ss_pred HhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhc
Confidence 999999999999999999 599999999999999999998 77799999875
No 39
>PRK05261 putative phosphoketolase; Provisional
Probab=99.22 E-value=7.6e-11 Score=125.78 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=115.5
Q ss_pred cccccCCCchHHHHHHHHhccCCC--CeEecCCCchhhH------hhcC--------CCHHHH-HHHHhhCcCCCCCCCC
Q 020562 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPGVL------LWRG--------YTLQQF-ANQVFANKADDGKGRQ 220 (324)
Q Consensus 158 i~fy~~~~GqEA~~VG~aaAL~~~--D~v~~~YRe~g~~------l~RG--------~~l~~i-~~q~~g~~~d~~kGr~ 220 (324)
+|-|-++-|+-.+-+..-...++. |++|-.=-+||.. ..-| ++.++. |..+|-+-+- +| .
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~--pg-g 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF--PG-G 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC--CC-C
Confidence 477778888877755555455554 6444332356632 2345 444442 4334444322 22 5
Q ss_pred CCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchH---HHHHHHHHHcCCC-EEEEEec
Q 020562 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEAP-VVFICRN 296 (324)
Q Consensus 221 mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdf---hEALNfAa~~~lP-vIFv~eN 296 (324)
+|.|.....+++...+|+||.++++|+|+|+ ++.+.+|+|++|||++++|.+ |++.+|++-.++. |+-|+.+
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al----~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHH----cCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 6889987888999999999999999999995 456889999999999999985 8999998888884 8888899
Q ss_pred CCccccccccccc-cCccHHHHHHhh
Q 020562 297 NGWAISTNISEQF-RSTAITSFFFKF 321 (324)
Q Consensus 297 NgyAIStP~~~Q~-~~~~Ia~k~~~~ 321 (324)
|+|+|++|++.+. ..+.++++|..|
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~ 227 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGY 227 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHC
Confidence 9999999999764 457899999875
No 40
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.05 E-value=3.5e-09 Score=109.76 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=114.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEec--CCCchhhHhhc
Q 020562 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWR 197 (324)
Q Consensus 121 ~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~--~YRe~g~~l~R 197 (324)
|++...+|.++|.++-+.+ +-+.+|.. .+--| ...++.|---..|+....++ |.|.++- .|....+-+..
T Consensus 11 P~dLk~ls~~eL~~La~Ei-R~~li~~v---S~~GG---HlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLT 83 (627)
T COG1154 11 PADLKKLSIEELPQLADEI-REFLLEVV---SATGG---HLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILT 83 (627)
T ss_pred HHHHhhCCHHHHHHHHHHH-HHHHHHHh---ccCCC---ccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhc
Confidence 4445577888887776543 11111211 11223 44566666566688888885 7886653 34555566665
Q ss_pred CCCHHHHHHHHhhCc--CCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch
Q 020562 198 GYTLQQFANQVFANK--ADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (324)
Q Consensus 198 G~~l~~i~~q~~g~~--~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd 275 (324)
|-. +-+..+.-.. +++.+ | ...++..+ .++.-+|.++.|+|+|.|..++++++-||+.+||||.+-|.
T Consensus 84 GR~--e~f~tlRq~~GlsGf~~-r------~ESe~D~f-~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 84 GRR--EQFDTLRQKDGLSGFPK-R------EESEHDWF-GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred Cch--hhcchhhhcCCCCCCCC-c------ccCCCccc-ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 543 2222221111 11111 1 11234554 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEecCCcccccccc
Q 020562 276 FHAALNFAA-VMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 276 fhEALNfAa-~~~lPvIFv~eNNgyAIStP~~ 306 (324)
.+||||.|+ ..+-|+|.|+.+|+.+||.++-
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvG 185 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVG 185 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCcc
Confidence 999999998 6668999999999999998763
No 41
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.00 E-value=4.8e-10 Score=96.07 Aligned_cols=70 Identities=27% Similarity=0.266 Sum_probs=60.6
Q ss_pred ccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 231 NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 231 ~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
.+....+++|.++|.|+|++++.+ ++.++|++|||+..+ ..++|+.|..+++|+++||.||++..+++..
T Consensus 40 ~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~ 109 (168)
T cd00568 40 LTSTGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMH 109 (168)
T ss_pred EeCCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHH
Confidence 334567999999999999999875 678999999999998 5799999999999999999999987776653
No 42
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.00 E-value=9.5e-10 Score=104.56 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=101.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccC-CCCeEec--CCCchhhHhh
Q 020562 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLW 196 (324)
Q Consensus 121 ~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~-~~D~v~~--~YRe~g~~l~ 196 (324)
|.+...++.++|.++-+.+ |.+ +.+ .-.+. |...++.|---..|+....++ |.|.++- .|....+-+.
T Consensus 7 p~dlk~ls~~eL~~La~ei---R~~---ii~--~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiL 78 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQEI---REF---IIE--TVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKIL 78 (270)
T ss_dssp HHHHTTS-GGGHHHHHHHH---HHH---HHH--HCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHH---HHH---HHH--HHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhc
Confidence 3344577888887776554 222 111 11222 355566666667788888886 7887764 3444455554
Q ss_pred cCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchH
Q 020562 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (324)
Q Consensus 197 RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdf 276 (324)
.|---. +.. +-+. +|-.+-......++..+ ..+.-+|.++.|.|+|.|.++++++.-+|+.+||||.+-|..
T Consensus 79 TGR~~~--f~T-lRq~----gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 79 TGRRDR--FHT-LRQY----GGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTTCCC--GGG-TTST----TS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred cCcHHH--hch-hhhc----CCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 442210 000 0000 11111111122233444 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 277 HAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 277 hEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
+||||.|+..+-++|.|..+|+.+||-++.
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvG 180 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVG 180 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--S
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcc
Confidence 999999999999999999999999997653
No 43
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.97 E-value=6.7e-09 Score=110.01 Aligned_cols=186 Identities=10% Similarity=0.086 Sum_probs=126.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCcccccCCCchHHHHHHHHhccC-CCCeEec--CCCchhhH
Q 020562 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEA--QRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVL 194 (324)
Q Consensus 120 ~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~l--qRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~--~YRe~g~~ 194 (324)
.|.+...++.++|.+|-..+ |.+ .+... ...|++ .++.|==-..|+....++ |.|.++- .|....+-
T Consensus 84 ~P~dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~GGHl---~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HK 155 (701)
T PLN02225 84 TPLQLKNLSVKELKLLADEI---RTE--LHSVLWKKTQKSM---NPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHK 155 (701)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhhcccCCCc---CCCccHHHHHHHHHHHhCCCCCceeeccccccchhh
Confidence 34556688999888876654 322 11222 234444 457776666788999986 7887654 35555666
Q ss_pred hhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccc
Q 020562 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (324)
Q Consensus 195 l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeG 274 (324)
|..|-- +++ . . +..+ |-.+-......++..+ ..+.-+|.++.|.|+|.|..++++++-+|+++||||.+-|
T Consensus 156 iLTGR~-~~f-~-~--Rq~~---GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgG 226 (701)
T PLN02225 156 VLTRRW-SAI-P-S--RQKN---GISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAG 226 (701)
T ss_pred HhcCCh-hhc-C-c--cccC---CcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhh
Confidence 666643 111 1 1 1111 1111111122244555 4689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCcccccccc--ccccCccHHHHHHhhh
Q 020562 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNIS--EQFRSTAITSFFFKFL 322 (324)
Q Consensus 275 dfhEALNfAa~~~lPvIFv~eNNgyAIStP~~--~Q~~~~~Ia~k~~~~~ 322 (324)
..+||||.|+..+-++|.|+.||+++|+-+.+ ...+..+++..+.++.
T Consensus 227 ma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~ 276 (701)
T PLN02225 227 QAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQ 276 (701)
T ss_pred hHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHh
Confidence 99999999999999999999999999998722 1122445666666553
No 44
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=98.82 E-value=6.4e-09 Score=91.08 Aligned_cols=62 Identities=32% Similarity=0.299 Sum_probs=54.8
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN 304 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIStP 304 (324)
+++|.++|.|+|+++|.+ ++.++|++|||+...+- .+|+.|..+++|+++||.||+ |++...
T Consensus 49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRS 111 (178)
T ss_pred ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHH
Confidence 899999999999999863 67899999999999884 689999999999999998885 998754
No 45
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=98.69 E-value=7.3e-08 Score=84.37 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=53.4
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE 307 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP~~~ 307 (324)
..+.+|..+|.|+|+++|. .++.|+|++|||+.... .+.|+.|+.+++|+++||-|| +|++.....+
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 4577888888888887764 47789999999999864 577999999999987777665 6998765443
No 46
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.53 E-value=7.9e-08 Score=84.97 Aligned_cols=63 Identities=24% Similarity=0.358 Sum_probs=51.6
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAISt 303 (324)
..+.+|.++|.|+|+++|. .++.++|++|||+...+ +.| |..|..+++|+++||.||+ |++..
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHH
Confidence 3478888888888887763 46789999999999988 677 5668899999999998885 88753
No 47
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.47 E-value=2.9e-07 Score=94.03 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=54.9
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS 302 (324)
+.++.+|.++|.|+|+++|. .++.|+|++|||+...+ .+.|+.|..+++|+++||.||+ |++.
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGAL 467 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHH
Confidence 34689999999999999885 35689999999999998 4889999999999999998887 9874
No 48
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.38 E-value=4.9e-07 Score=80.64 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=46.5
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC--ccchHHHHHHHHHHcCC-C-EEEEEecCCccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT--SEGDFHAALNFAAVMEA-P-VVFICRNNGWAIST 303 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat--SeGdfhEALNfAa~~~l-P-vIFv~eNNgyAISt 303 (324)
.+++|..+|.|+|+++|.+ +.|+|++|||+. +.++++. |+.+++ | +++|++||+|++..
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~~~el~t----a~~~~~~~l~vvV~NN~~~~~~~ 103 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMNLGALAT----IAAEKPKNLIIVVLDNGAYGSTG 103 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhCHHHHHH----HHHcCCCCEEEEEEcCccccccC
Confidence 6899999999999999865 579999999999 5555555 455664 5 56667888999864
No 49
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.24 E-value=1.5e-06 Score=77.63 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=49.5
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCC-EEEEEecCCccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lP-vIFv~eNNgyAISt 303 (324)
..+++|..+|.|+|+++|.+ ++.|+|++|||+. .-.++|.. .|+.+++| +|+|++||+|++..
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f-~~~~~el~-ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSF-QMTVQELS-TMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchh-hccHHHHH-HHHHhCCCCEEEEEECCCcEEEE
Confidence 45788999998988888753 5789999999999 55788855 58888898 56666777899743
No 50
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.21 E-value=2.2e-06 Score=76.19 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=47.9
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
.+.+|..+|.|+|+++|. .++.|||++|||+..-. . ..|..|+.+++|+++||-||+ |++
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGSLGM 109 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCccHH
Confidence 478899888888888774 46789999999998853 3 448889999999888887775 554
No 51
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.17 E-value=2.4e-06 Score=76.97 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=49.2
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAISt 303 (324)
..+.+|..+|.|+|+++|. .++.|||+.|||+..-. ..| |.-|+.+++|+|+|| +|++|++..
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHH
Confidence 3477899999999887763 46789999999999884 455 555899999987777 666798643
No 52
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.05 E-value=8.4e-06 Score=84.33 Aligned_cols=63 Identities=29% Similarity=0.349 Sum_probs=52.7
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++| ..++.|||++|||+...+-..++|+.|..+++|+++||-|| +|++.
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~ 492 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAV 492 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccc
Confidence 46788877777776665 45788999999999999877778999999999998888888 68874
No 53
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.03 E-value=0.00015 Score=79.50 Aligned_cols=201 Identities=16% Similarity=0.178 Sum_probs=131.3
Q ss_pred CCCCceEEeCCCCCc-cc---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcccccCCCchHHHHHHHHhcc
Q 020562 104 KRVPCFRVLDDNGEL-IK---GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYE-AQRQGRFSFYLTTIGEEAINIGSAAAL 178 (324)
Q Consensus 104 ~~~p~~rvld~~G~~-~~---~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~-lqRqGri~fy~~~~GqEA~~VG~aaAL 178 (324)
-.+....|.|++-+. +. +....+.+.|+-+.+.++...+-.||.-+.. ...|.|.+ -.|-|....-+-..|
T Consensus 463 vg~EymhI~dpeqr~W~Q~rvE~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFs----lEG~Es~iplld~~~ 538 (1228)
T PRK12270 463 VGIEYMHIQDPEQRRWLQERVERPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFS----LEGGESLIPLLDAVL 538 (1228)
T ss_pred heeeeeecCCHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeee----ecchhhHHHHHHHHH
Confidence 446777787776432 11 1224578999999999999999999987753 44455532 345555533333333
Q ss_pred C------CCCeEec-CCCchhhHh--hcCCCHHHHHHHHhhCcCCCCCCCCC--CcccCCCCCcc-----------cccc
Q 020562 179 S------ADDFILP-QYREPGVLL--WRGYTLQQFANQVFANKADDGKGRQM--PIHYGSKKLNY-----------ITIS 236 (324)
Q Consensus 179 ~------~~D~v~~-~YRe~g~~l--~RG~~l~~i~~q~~g~~~d~~kGr~m--p~H~~~~~~~~-----------~~~s 236 (324)
+ -+.+++. .||+.-=.| --|-+..+|+.|+=||-+-...+..+ --|.+...... ...-
T Consensus 539 ~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNP 618 (1228)
T PRK12270 539 DQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANP 618 (1228)
T ss_pred HHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCc
Confidence 2 2345554 588765444 36899999999999987432221112 22433322111 1122
Q ss_pred CCccCchhhhhHHHhhhh--hc-C---CCCEEEEEeCCCC-CccchHHHHHHHHHHcCCC---EEEEEecCCcccccccc
Q 020562 237 SPIATQLPQAVGVAYSLK--ME-K---KDACAVAYTGDGG-TSEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNIS 306 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k--~~-g---~~~Vvv~~~GDGa-tSeGdfhEALNfAa~~~lP---vIFv~eNNgyAIStP~~ 306 (324)
|.|-+-=|..-|++-|.+ +. + -..+-+++-||+| +.+|-++|.||+|..|+.| +|+||.||+++..|..+
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~ 698 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE 698 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc
Confidence 444444466678887754 22 1 2447889999999 8999999999999999999 99999999999999876
Q ss_pred cc
Q 020562 307 EQ 308 (324)
Q Consensus 307 ~Q 308 (324)
..
T Consensus 699 ~~ 700 (1228)
T PRK12270 699 SS 700 (1228)
T ss_pred cc
Confidence 43
No 54
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.00 E-value=1.4e-05 Score=70.69 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=48.4
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
..+++|..+|.|+|+++|.+ ++-|+++.|||+....- .+.|..|..+++|+++||-|| +|++
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~ 111 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAM 111 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceec
Confidence 46889999999999988864 56689999999996422 577888999999976666555 5664
No 55
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=97.97 E-value=9.8e-06 Score=83.49 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=52.0
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST 303 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAISt 303 (324)
.+.+|..+|.|+|+++|. .++.|+|+.|||+..-. +.| |..|..+++|+|+||-||+ |++..
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccH
Confidence 378999999999998885 36679999999999984 666 7789999999988888886 88753
No 56
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.91 E-value=1.8e-05 Score=82.05 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=49.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
..+.+|.++|.|+|+++|. .++.|||++|||+.. -.+.| |.-|..+++|+||||-||+ |++
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~-~~~~e-l~Ta~~~~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQ-MNIQE-LQTIAENNIPVKVFIINNKFLGM 481 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhh-ccHHH-HHHHHHhCCCeEEEEEECCccHH
Confidence 3389999999999998873 467899999999995 44555 7777999999999998886 554
No 57
>PRK07524 hypothetical protein; Provisional
Probab=97.90 E-value=1.3e-05 Score=82.06 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=50.9
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++.|||++|||+... .+.| |..|..+++|+++||-|| +|++.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~-~~~e-l~ta~~~~lpi~~vV~NN~~~g~i 467 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQF-TLPE-LASAVEADLPLIVLLWNNDGYGEI 467 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh-hHHH-HHHHHHhCCCeEEEEEECCchHHH
Confidence 488999999999998874 4678999999999964 4555 889999999998888887 79754
No 58
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=97.88 E-value=3.1e-05 Score=67.77 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=45.5
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC--ccchHHHHHHHHHHc-CCCEEEEE-ecCCcccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT--SEGDFHAALNFAAVM-EAPVVFIC-RNNGWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat--SeGdfhEALNfAa~~-~lPvIFv~-eNNgyAIS 302 (324)
.+++|..+|.|+|+++|.+ +.|||+.|||+. +-++ |..++.+ ++|+++|| +|++|++-
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~~~e----l~t~~~~~~~~i~~vV~nN~~~g~~ 102 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMNPGV----LLTAGEFTPLNLILVVLDNRAYGST 102 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhcccH----HHHHHHhcCCCEEEEEEeCcccccc
Confidence 7899999999999999853 568999999998 5554 5556677 59987777 55568863
No 59
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=97.86 E-value=2e-05 Score=81.49 Aligned_cols=57 Identities=30% Similarity=0.471 Sum_probs=48.2
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.+.+|.++|.|+|+++| +.++.|||++|||+.. .....|+.|..+++|+++||-||+
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~ 492 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNG 492 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCC
Confidence 36789988888888776 3467899999999985 557889999999999999998886
No 60
>PRK08266 hypothetical protein; Provisional
Probab=97.86 E-value=2e-05 Score=80.65 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=50.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+.+|..+|.|+|++++ ..++.|+|++|||+...+ ...|..|..+++|+++||-|| +|++.
T Consensus 400 ~~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~ 462 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNV 462 (542)
T ss_pred CCcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence 347888888888888665 456779999999999997 477899999999988888777 68864
No 61
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.86 E-value=1.9e-05 Score=81.45 Aligned_cols=61 Identities=30% Similarity=0.445 Sum_probs=51.1
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
..+.+|..+|.|+|+++|. .++.|||++|||+..-. -..|..|..+++|+++||-||+ |++
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGM 480 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHH
Confidence 4578999999999998884 35679999999999876 3889999999999999998886 553
No 62
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=97.84 E-value=2.1e-05 Score=70.48 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=48.1
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcC-CCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME-APVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~-lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. ++-|||+.|||+...+- ..|..|+.++ +|+++||-|| +|++-
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~ 102 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGST 102 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccc
Confidence 678999899999998874 55699999999997653 5677788899 5988888666 48874
No 63
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=97.84 E-value=2.6e-05 Score=70.43 Aligned_cols=62 Identities=26% Similarity=0.257 Sum_probs=48.5
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+++|..+|.|+|+++|. .++.|||+.|||+..-.- ..|.-|..+++|+|+||-|| +|++.
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~~ 117 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGLI 117 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHHH
Confidence 3478888888888887774 467899999999987663 55777999999988777777 58863
No 64
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=97.82 E-value=1.2e-05 Score=68.94 Aligned_cols=62 Identities=32% Similarity=0.439 Sum_probs=48.7
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+.+|..+|.|+|+++| ..++.+||++|||+..-. -..|.-|..+++|+++||-|| +|++.
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEe
Confidence 568889888888888886 557889999999998776 556778889999977777666 57664
No 65
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=97.81 E-value=5e-05 Score=68.86 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=45.5
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAIS 302 (324)
..+++|..+|.|+|+++| ..++-|||+.|||+...+ ...|..|..+++|+++|| +||+|++-
T Consensus 46 ~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 108 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCI 108 (205)
T ss_pred CcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHH
Confidence 346777777777777666 456779999999999875 245777899999965555 55578863
No 66
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=97.78 E-value=3.4e-05 Score=79.38 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=47.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
..+.+|..+|.|+|++++ ..++.|||++|||+..-. ...|..|+.+++|+++||.||+ |++
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~ 474 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGT 474 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchH
Confidence 347777777777776655 457789999999997743 3678889999999999998887 774
No 67
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=97.67 E-value=5.3e-05 Score=67.29 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=47.3
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+.+|..+|.|+|+++|. .++-|||+.|||+..-. -..|--|..+++|+|+||-|| +|++.
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~ 108 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLI 108 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHH
Confidence 4578999999999988873 46679999999998543 244566888999977776555 68875
No 68
>PRK06163 hypothetical protein; Provisional
Probab=97.67 E-value=5.2e-05 Score=69.41 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=44.8
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHc-CCCEEEEEecC-Cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~-~lPvIFv~eNN-gyAI 301 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-. -..|..|+.+ ++|+++||-|| +|++
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~ 117 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQI 117 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhh
Confidence 578999999999988874 45679999999987432 1345556655 68988887777 6886
No 69
>PRK12474 hypothetical protein; Provisional
Probab=97.67 E-value=7.4e-05 Score=76.36 Aligned_cols=62 Identities=31% Similarity=0.309 Sum_probs=49.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+++|..+|.|+|+++|. .++-|||+.|||+..-.- ..|--|..+++|+++||-|| +|++-
T Consensus 387 ~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~~--qEL~Ta~r~~lpv~iiV~NN~~y~~i 449 (518)
T PRK12474 387 TGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYTM--QALWTMARENLDVTVVIFANRSYAIL 449 (518)
T ss_pred CCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcchH--HHHHHHHHHCCCcEEEEEcCCcchHH
Confidence 3488999888888888875 466799999999988663 66888999999977777777 58864
No 70
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=97.66 E-value=5.8e-05 Score=77.66 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=48.9
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyA 300 (324)
.+++|..+|.|+|+++|. .++.|+|++|||+..-. .. .|..|..+++|+++||-||++-
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~~ 469 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQ-ELSTAVQYDIPVKILILNNRYL 469 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEeCCch
Confidence 478999999999987774 45679999999999873 43 6888999999999999888743
No 71
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=97.64 E-value=0.00015 Score=65.37 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=46.0
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNN-gyAIS 302 (324)
++++|..+|.|+|+++|.. +.-|+|+.|||+..-. .+.|..|+.+++ |+++||-|| +|++.
T Consensus 47 ~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 47 VGSMGHASQIALGIALARP----DRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhcc
Confidence 4889999999999988753 5568999999998532 245788888987 666666555 57763
No 72
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.64 E-value=0.00011 Score=71.36 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=61.6
Q ss_pred CccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 020562 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WA 300 (324)
Q Consensus 230 ~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yA 300 (324)
.++..+.+..|.+.+.|.|++.|++..+++..|||+.|||++..--+ .+|..|...+.++++||-||+ |+
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~ 132 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYM 132 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCcccc
Confidence 45667788999999999999999988777788999999998876666 999999999999999999996 44
No 73
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.63 E-value=9.1e-05 Score=76.46 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=48.9
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
.+.+|..+|.|+|+++|.. ++.|||+.|||+..-. ..| |..|..+++|+|+||-||+ |++
T Consensus 413 ~g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAVP----DKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGM 473 (563)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchh
Confidence 3789999999999888753 5569999999999984 455 8889999999888887775 665
No 74
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=97.59 E-value=8.4e-05 Score=77.19 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=49.8
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS 302 (324)
.+++|..+|.|+|+++|. .++.|||++|||+..-+ . ..|..|..+++|+++||-||+ |++.
T Consensus 407 ~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~-~el~Ta~~~~lpv~~vV~NN~~~g~i 468 (578)
T PRK06546 407 HGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-L-GELLTVKLYDLPVKVVVFNNSTLGMV 468 (578)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-H-HHHHHHHHhCCCeEEEEEECCccccH
Confidence 478999999999998875 36789999999999863 3 457889999999888888885 6753
No 75
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=97.57 E-value=9.5e-05 Score=76.46 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=49.4
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++.||+++|||+..- ++.| |..|..+++|+++||-|| +|++-
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m-~~~e-L~ta~r~~lpi~ivV~NN~~~~~i 484 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQM-TLQE-LSVIKELSLPVKVVILNNEALGMV 484 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh-hHHH-HHHHHHhCCCeEEEEEECchHHHH
Confidence 378888888888888874 4667999999999996 4666 999999999977777666 58763
No 76
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=97.53 E-value=0.00013 Score=65.82 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC-ccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
+.+|..+|.|+|+++| ..++.||++.|||+. .-+ ...|--|..+++|+++||-|| .|++-
T Consensus 51 g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~ 112 (193)
T cd03375 51 TLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLT 112 (193)
T ss_pred hhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccC
Confidence 6778877777777666 457789999999994 222 355777888999988777666 57764
No 77
>PRK11269 glyoxylate carboligase; Provisional
Probab=97.52 E-value=0.00012 Score=76.23 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=49.6
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS 302 (324)
..+++|..+|.|+|+++|. .++-|||+.|||+..-.- ..|.-|..+++|+++||-||+ |++-
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~i 479 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFLI--EELAVGAQFNLPYIHVLVNNAYLGLI 479 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcCH--HHHHHHHHhCCCeEEEEEeCCchhHH
Confidence 4578999999999888874 366799999999987652 457789999999888887776 7753
No 78
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=97.51 E-value=8.8e-05 Score=69.24 Aligned_cols=60 Identities=32% Similarity=0.485 Sum_probs=45.6
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC-ccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WA 300 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lPvIFv~eNNg-yA 300 (324)
..+++|..+|.|+|++.+ ..++.|||+.|||+. .-+ -..|.-|+.+++|+++||-||+ |+
T Consensus 60 ~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg 121 (235)
T cd03376 60 NAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYM 121 (235)
T ss_pred CHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccc
Confidence 345788878777776443 446779999999995 333 3568889999999999988885 77
No 79
>PRK07064 hypothetical protein; Provisional
Probab=97.49 E-value=0.00017 Score=73.75 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=48.6
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
+..+.+|..+|.|+|+++|. .++-|+|++|||+..-.- ..|.-|..+++|+++||-|| +|++-
T Consensus 402 ~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~yg~~ 465 (544)
T PRK07064 402 ALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLNL--GELATAVQENANMVIVLMNDGGYGVI 465 (544)
T ss_pred cCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhhH--HHHHHHHHhCCCeEEEEEeCChhHHH
Confidence 33467999888888888873 466799999999987652 56778899999977776555 68864
No 80
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=97.48 E-value=0.0032 Score=67.26 Aligned_cols=183 Identities=18% Similarity=0.155 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcccccCCCch--HHHHHHHHhccCCC------CeEecCCCchh--hHhhc
Q 020562 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQG-RFSFYLTTIGE--EAINIGSAAALSAD------DFILPQYREPG--VLLWR 197 (324)
Q Consensus 129 ~e~ll~lYr~Mv~~R~~D~~~~~lqRqG-ri~fy~~~~Gq--EA~~VG~aaAL~~~------D~v~~~YRe~g--~~l~R 197 (324)
+.++.+-+|..++=..+-. ....+|.| +||-.+.+.-- .---|+....+++. |.||-+ .|+ ...+|
T Consensus 74 d~~lErrir~~irWna~a~-vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~q--gHaSPg~yAr 150 (887)
T COG2609 74 DLELERRIRSLIRWNAHAM-VLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQ--GHASPGIYAR 150 (887)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEe--cCCCchHHHH
Confidence 3456666666655555522 22334333 23433333211 23357777788776 999887 333 23333
Q ss_pred ----C-CCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccc-cccCCccCchhhhhHHHhhhhhc-------CCCCEEEE
Q 020562 198 ----G-YTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI-TISSPIATQLPQAVGVAYSLKME-------KKDACAVA 264 (324)
Q Consensus 198 ----G-~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~-~~ss~lGtqlp~AvG~A~A~k~~-------g~~~Vvv~ 264 (324)
| ++.+++=+ +..-. + ++|-+=-.|.- ..+.|+ -.+.++|-+..+|+=-|.-+||. .+++.|+|
T Consensus 151 afLeGRlseeqLdn-FRqev-~-g~gl~SYPhp~-lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~a 226 (887)
T COG2609 151 AFLEGRLTEEQLDN-FRQEV-D-GKGLSSYPHPK-LMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWA 226 (887)
T ss_pred HHHhccccHHHHHH-HHHhc-c-CCCCCCCCCCc-CCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEE
Confidence 3 45554433 33322 2 23332111321 112222 23456666666666555555542 35789999
Q ss_pred EeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 265 ~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|+|||++.|+.-.+|+.+|+..+| ++||||.=|......|+..-. -|-+.|-.|
T Consensus 227 fLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgng---kiiqelE~~ 281 (887)
T COG2609 227 FLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNG---KIIQELEGI 281 (887)
T ss_pred EecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCc---hhHHHHHHH
Confidence 999999999999999999999999 799999999999999986531 255555443
No 81
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=97.44 E-value=8.3e-05 Score=65.75 Aligned_cols=58 Identities=28% Similarity=0.273 Sum_probs=44.9
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
+.+|..+|.|.|+++|. ++-|||+.|||+.--. -..|--|..+++|+++||-|| +|++
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~ 109 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGI 109 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCch
Confidence 67889999999999884 4558899999998765 245666778899977666666 5875
No 82
>PRK07586 hypothetical protein; Validated
Probab=97.41 E-value=0.00021 Score=72.76 Aligned_cols=61 Identities=30% Similarity=0.281 Sum_probs=47.7
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-. -..|.-|..+++|+++||-|| +|++-
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~ 445 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAIL 445 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHH
Confidence 477888888888888874 46779999999998765 366788899999976666555 69863
No 83
>PRK06154 hypothetical protein; Provisional
Probab=97.41 E-value=0.0002 Score=74.32 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=49.1
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++-|||++|||+..-.- ..|.-|..+++|+|+||-|| +|++-
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~yg~~ 491 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMTG--MDFETAVRERIPILTILLNNFSMGGY 491 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECCcccee
Confidence 478888888888887774 467899999999987663 56999999999988888777 58753
No 84
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=97.39 E-value=0.00021 Score=74.28 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=49.3
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
..+.+|..+|.|+|+++|.+ ++.|+|+.|||+..-. -..|.-|..+++|+++||-||+ |++
T Consensus 428 ~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGM 489 (585)
T ss_pred cccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchH
Confidence 45789999999999888753 6679999999999754 3567888999999998888886 554
No 85
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.35 E-value=0.00033 Score=73.10 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=49.0
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS 302 (324)
.+.+|..+|.|+|+++|. .++.|||+.|||+..-.- ..|--|..+++|+|+||-||+ |++-
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~y~~i 490 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQYMGMV 490 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 378888888888888764 467899999999987663 558899999999888887775 8763
No 86
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=97.28 E-value=0.00023 Score=73.11 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=47.3
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++-|+|+.|||+..-. -..|.-|..+++|+++||-|| +|++-
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i 464 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVE 464 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEE
Confidence 478888888888888764 46779999999998765 366888999999966666555 68763
No 87
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.27 E-value=0.00038 Score=72.07 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=48.7
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
..+++|..+|.|+|+++|. .++-|||+.|||+..-. -..|..|..+++|+++||-|| +|++
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGM 482 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHH
Confidence 3478899899998888875 36679999999998876 256788999999977777666 5876
No 88
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=97.25 E-value=0.00038 Score=72.34 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=48.0
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
..+.+|..+|.|+|+++|. .++.||+++|||+..-+ ..| |--|..+++|+++||-|| +|++
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGA 494 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHH
Confidence 3478898888888888774 36679999999998887 444 667999999988777555 7875
No 89
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=97.24 E-value=0.00044 Score=67.18 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=72.4
Q ss_pred HHHcCCc-ccccCCCchHHHHHHHHhcc-----CCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCccc
Q 020562 152 AQRQGRF-SFYLTTIGEEAINIGSAAAL-----SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225 (324)
Q Consensus 152 lqRqGri-~fy~~~~GqEA~~VG~aaAL-----~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~ 225 (324)
..|.-++ ..|.+..|+=.+.-++..+| .|+|.++.+ +-|-.-+ . + +|
T Consensus 10 ~~~~~~~~~~~CpGCg~~~i~~~i~~al~~l~l~p~d~vivs--diG~s~~--------~----------------~-~y 62 (301)
T PRK05778 10 YLRYDGLPTTWCPGCGNFGILNAIIQALAELGLDPDKVVVVS--GIGCSSK--------I----------------P-GY 62 (301)
T ss_pred hhccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEe--CCcHhhh--------h----------------h-hh
Confidence 3455556 46888888877755555554 577877766 3332210 0 0 00
Q ss_pred CCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC-ccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 226 ~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.....+..|-.+|.|+|+++| ..+..|||+.|||+. +.| -..|--|+.+++|+++||-|| .|+..
T Consensus 63 ----l~~~~~~g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t 131 (301)
T PRK05778 63 ----FLSHGLHTLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLT 131 (301)
T ss_pred ----cccCccchhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcc
Confidence 01112225678888888888776 457789999999986 454 245667889999988888777 47653
No 90
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=97.24 E-value=0.00044 Score=70.93 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=47.1
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-.- ..|--|..+++|+++||-|| +|++
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpi~ivV~NN~~y~~ 467 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFSS--MELETAVRLKLNIVHIIWNDNGYNM 467 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhchH--HHHHHHHHhCCCeEEEEEECCcchH
Confidence 468899999999988875 356799999999988752 44777999999977666555 6876
No 91
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.24 E-value=0.00046 Score=71.84 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=48.5
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
.+++|..+|.|+|+++|. .++-|||+.|||+..-. -..|.-|..+++|+|+||-||+ |++
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~ 496 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGM 496 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchH
Confidence 378888888888888874 46679999999998776 3678889999999888887775 665
No 92
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.24 E-value=0.00046 Score=71.53 Aligned_cols=61 Identities=30% Similarity=0.392 Sum_probs=48.4
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-.- ..|.-|..+++|+++||-|| +|++.
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpv~~vV~NN~~y~~i 481 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMNI--QELSTALQYDIPVKIINLNNRFLGMV 481 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhccH--HHHHHHHHcCCCeEEEEEeCCccHHH
Confidence 368888888888888774 456799999999988762 56888999999988777766 47754
No 93
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=97.23 E-value=0.00058 Score=70.66 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=47.5
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
..+++|..+|.|+|+++|. ++-|||+.|||+..-.- ..|.-|..+++|+++||-||+
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~ 478 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFSG--MEVETICRYNLPVTVVIFNNG 478 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCccccccH--HHHHHHHHcCCCEEEEEEeCh
Confidence 3488999999999999882 55699999999987762 348888999999999998887
No 94
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=97.23 E-value=0.00049 Score=71.21 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=46.9
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+.+|..+|-|+|+++|. .++-|||++|||+..-. . ..|..|..+++|+++||-|| +|++-
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~i 468 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-M-GDFLSLVQLKLPVKIVVFNNSVLGFV 468 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-H-HHHHHHHHhCCCeEEEEEeCCccccH
Confidence 3478888888888888764 46679999999998654 2 34677899999977766666 58874
No 95
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=97.20 E-value=0.00045 Score=72.05 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=48.2
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++-||+++|||+..-. -..|.-|..+++|+++||-|| +|++-
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i 478 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLI 478 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHH
Confidence 377888888888887774 46679999999999776 367889999999977777666 58753
No 96
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.20 E-value=0.00024 Score=66.34 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=44.9
Q ss_pred cCCccCchhhhhHHHhhhhhc-CCCCEEEEEeCCCCCc-cchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 236 SSPIATQLPQAVGVAYSLKME-KKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~-g~~~Vvv~~~GDGatS-eGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
.+.+|..+|.|+|+++|.-.. ..++.|||+.|||+.- -| +.|-.+ +..+++|+++||-||+ |++
T Consensus 63 ~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~l~t-a~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 63 ANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGALSH-SLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHHHHH-HHHcCCCeEEEEECCccccC
Confidence 488999999999988762111 3467899999999763 22 344444 3459999888887775 663
No 97
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=97.20 E-value=0.00068 Score=69.85 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=46.9
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.+++|..+|.|+|+++|. ++-||++.|||+..-.- ..|--|+.+++|+++||-||+
T Consensus 416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~~--~EL~Ta~r~~l~v~~vV~NN~ 471 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFSG--MEVETICRYNLPVCVVIFNNG 471 (554)
T ss_pred CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhcccH--HHHHHHHHcCCCEEEEEEeCh
Confidence 488999999999999872 56799999999998763 348888899999888888886
No 98
>PLN02573 pyruvate decarboxylase
Probab=97.20 E-value=0.00034 Score=72.90 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=48.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+++|..+|.|+|+++|. .++.|||+.|||+..-.- ..|--|..+++|+++||-|| +|++.
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~vV~NN~~yg~~ 488 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVTA--QDVSTMIRCGQKSIIFLINNGGYTIE 488 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhHH--HHHHHHHHcCCCCEEEEEeCCceeEE
Confidence 3478999899999888875 366799999999986653 56888899999977777666 68864
No 99
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.19 E-value=0.00063 Score=70.48 Aligned_cols=60 Identities=30% Similarity=0.398 Sum_probs=48.4
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
.+++|..+|.|+|+++|. .++-|||+.|||+..-. -..|.-|..+++|+++||-|| +|++
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGM 480 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhH
Confidence 378888888888888774 45679999999998776 366888999999988888777 4776
No 100
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=97.17 E-value=0.00054 Score=66.06 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=69.4
Q ss_pred cCCcccccCCCchHHHHHHHHhcc-----CCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCC
Q 020562 155 QGRFSFYLTTIGEEAINIGSAAAL-----SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229 (324)
Q Consensus 155 qGri~fy~~~~GqEA~~VG~aaAL-----~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~ 229 (324)
..+...|.+..|+-.+.-.+..+| .|+|.++.+ +-|-.- + .+ +|
T Consensus 13 ~~~~~~~CpGCg~~~il~~l~~al~~l~~~p~d~vvvs--diGc~~-----------------------~-~~-~~---- 61 (286)
T PRK11867 13 NDQEPRWCPGCGDGSILAALQRALAELGLDPENVAVVS--GIGCSG-----------------------R-LP-GY---- 61 (286)
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEe--CCcccc-----------------------c-cC-cc----
Confidence 344555778888877765565666 367766554 222110 0 00 11
Q ss_pred CccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCC-CccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 230 ~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGa-tSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+..+..+++|-.+|.|+|+++| ..+.-|||+.|||+ ..-| -..|--|+.+++|+++||-|| .|++.
T Consensus 62 ~~~~~~~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt 130 (286)
T PRK11867 62 INTYGFHTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLT 130 (286)
T ss_pred ccccchhhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhh
Confidence 12223335778888888887776 45778999999995 6555 234666888999987777766 57763
No 101
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=97.16 E-value=0.00056 Score=70.94 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=48.0
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-.- ..|.-|..+++|+|+||-|| +|++-
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~yg~i 490 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQWGAE 490 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcchHHH
Confidence 378888888888887773 466799999999988763 66888999999977777666 58753
No 102
>PRK05858 hypothetical protein; Provisional
Probab=97.15 E-value=0.00076 Score=69.42 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=46.6
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-. -..|.-|..+++|+++||-|| +|++
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGL 466 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhh
Confidence 478898888888887774 46779999999998654 245777778999977777666 6876
No 103
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.12 E-value=0.00066 Score=65.45 Aligned_cols=111 Identities=18% Similarity=0.242 Sum_probs=72.3
Q ss_pred HcCCc-ccccCCCchHHHHHHHHhcc-----CCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCC
Q 020562 154 RQGRF-SFYLTTIGEEAINIGSAAAL-----SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS 227 (324)
Q Consensus 154 RqGri-~fy~~~~GqEA~~VG~aaAL-----~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~ 227 (324)
|.-++ ..|.+..|+-.+.-+...|| .|+|.++.+ |-|-. .+ +..++
T Consensus 2 r~~~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs--diG~~-~~-------~~~~~------------------ 53 (280)
T PRK11869 2 RPEKYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS--GIGQA-AK-------MPHYI------------------ 53 (280)
T ss_pred CcccCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe--CchHh-hh-------HHHHc------------------
Confidence 34456 46788889988877776666 356777665 33321 11 11111
Q ss_pred CCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCc-cchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 228 KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 228 ~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatS-eGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
+.....+.+|-.+|.|+|+.+| +.+.-||++.|||++- .| -..|.-|+.+++|+++||-||+ |+.
T Consensus 54 ---~~~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~ 120 (280)
T PRK11869 54 ---NVNGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGL 120 (280)
T ss_pred ---cCCCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhh
Confidence 0012234578888888888665 4567899999999954 22 3568888999999988888874 775
No 104
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.11 E-value=0.00069 Score=70.89 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=47.6
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
..+.+|..+|.|+|+++|. .++-|||+.|||+..-. . ..|.-|..+++|+|+||-||+ |++
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~-~eL~Ta~r~~lpvi~vV~NN~~~g~ 493 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-I-QELGTLAQYGINVKTVIINNGWQGM 493 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-H-HHHHHHHHhCCCeEEEEEECCcchH
Confidence 3478888888888887774 46679999999999865 2 447789999999888887775 665
No 105
>PRK08617 acetolactate synthase; Reviewed
Probab=97.11 E-value=0.00061 Score=70.09 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=46.4
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
.+.+|..+|.|+|+++|. .++-|+|+.|||+..-.- ..|.-|..+++|+|+||-|| +|++
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~~~~ 473 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFSA--MELETAVRLKLNIVHIIWNDGHYNM 473 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhhH--HHHHHHHHhCCCeEEEEEECCccch
Confidence 467888888888887764 466799999999988653 55777999999987666666 5775
No 106
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.09 E-value=0.00075 Score=69.75 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=47.7
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
+++|..+|.|+|+++|. .++-|+|+.|||+..-. -..|.-|..+++|+++||-|| +|++-
T Consensus 414 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i 474 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMV 474 (561)
T ss_pred cccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHH
Confidence 78899888888888874 45678999999998766 366888899999977777666 57753
No 107
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.09 E-value=0.00062 Score=70.41 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=51.8
Q ss_pred ccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCccccccccc
Q 020562 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISE 307 (324)
Q Consensus 233 ~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~ 307 (324)
.+-.++||-.+|-|.|+++|.+ ++.++.++||||...- -.-+.---.|++ |+|||+.|+||-|---.+.
T Consensus 407 Q~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg 476 (557)
T COG3961 407 QPLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHG 476 (557)
T ss_pred ccchhhcccccHhhhhhhhcCC----CccEEEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcC
Confidence 4566888888888888888866 6889999999987542 122333345888 6999999999998766655
No 108
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=97.07 E-value=0.00087 Score=68.92 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=47.6
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++-|||++|||+..-.- ..|.-|..+++|+++||-|| +|++-
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 378888888888888774 456789999999987663 55888899999977766555 68763
No 109
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=97.07 E-value=0.00067 Score=70.33 Aligned_cols=62 Identities=19% Similarity=0.367 Sum_probs=48.3
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+++|..+|.|+|+++|. .++-||++.|||+..-.- ..|.-|..+++|+++||-|| +|++-
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i 478 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMV 478 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCCchHH
Confidence 3488899888888888774 356689999999987762 55888899999977777666 68864
No 110
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=97.07 E-value=0.00047 Score=71.08 Aligned_cols=58 Identities=31% Similarity=0.298 Sum_probs=44.8
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
+.+|..+|.|+|+++| . ++-|||+.|||+..-.- ..|.-|..+++|+++||-|| +|+|
T Consensus 425 ~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~ 483 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGI 483 (568)
T ss_pred cchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCcc
Confidence 6688889999999887 2 44589999999998642 34666889999977766666 5885
No 111
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=97.06 E-value=0.00084 Score=64.91 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=44.0
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC-ccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
+..|-.+|.|+|+++| +.+.-|||+.|||+. ..| -..|--|+.+++|+++||-|| .|++-
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt 114 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLT 114 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhh
Confidence 4457777777777665 557789999999994 344 355777889999988888777 46654
No 112
>PLN02470 acetolactate synthase
Probab=97.06 E-value=0.00085 Score=69.75 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=47.8
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
.+.+|..+|.|+|+++|. .++-|||+.|||+..-.- ..|.-|..+++|+++||-|| +|++
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQHLGM 485 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCcchH
Confidence 378888888888888774 356789999999998773 67888999999987777666 5754
No 113
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=97.03 E-value=0.00097 Score=69.27 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=47.5
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAIS 302 (324)
.+.+|..+|.|+|+++| ..++.||++.|||+..-. -..|.-|..+++|+++|| .||+|++.
T Consensus 407 ~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i 468 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFI 468 (575)
T ss_pred cchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 47888877777777665 446789999999999886 356899999999977775 55569864
No 114
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.03 E-value=0.0009 Score=64.44 Aligned_cols=60 Identities=28% Similarity=0.477 Sum_probs=46.7
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCC-CCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDG-atSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
.+..|..+|.|.|+.+| ..+.-||++.||| +...| -..|--|+.+++|+++||-||+ |+.
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygm 119 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGL 119 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhh
Confidence 45678888888888777 3456799999999 57777 3557779999999888888884 555
No 115
>PRK08611 pyruvate oxidase; Provisional
Probab=97.02 E-value=0.00083 Score=69.78 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=47.5
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++-|||++|||+..-. -..|..|..+++|+|+||-|| +|++-
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i 468 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFI 468 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence 478888888888888764 45669999999999886 366788999999976666555 68863
No 116
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.99 E-value=0.0015 Score=68.55 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=48.6
Q ss_pred ccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 233 ~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
....+.+|..+|.|.|+++|. .++-||+++|||+..-.+..| |..|..+++|+++||-|| +|++.
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMT 464 (595)
T ss_pred cceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceecc
Confidence 334578888888888887763 456799999999998644444 445888999988777666 68864
No 117
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=96.99 E-value=0.00094 Score=69.67 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=44.5
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHc-----CCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-----EAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~-----~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++-|+|++|||+..-.-. ..|.-|..+ ++|+|+||-|| +|++-
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i 481 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQV 481 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHH
Confidence 368888888888888774 4667999999999843311 335555666 89988888777 47653
No 118
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=96.96 E-value=0.0012 Score=63.53 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=41.8
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCc-cchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNN-GWAI 301 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatS-eGdfhEALNfAa~~~lPvIFv~eNN-gyAI 301 (324)
++.|-.+|.|+|+++| ..++-|||+.|||+.- -|. ..+--|+.+++|+++||-|| .|++
T Consensus 68 ~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g~--~el~ta~r~nlpi~iIV~NN~~yGm 128 (277)
T PRK09628 68 TTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIGG--NHTIHGCRRNIDLNFILINNFIYGL 128 (277)
T ss_pred eccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhhH--HHHHHHHHhCcCeEEEEEEChHHhc
Confidence 3667777777777766 4577899999999852 121 12233789999988888777 4775
No 119
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=96.94 E-value=0.0012 Score=68.24 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=48.4
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+.+|..+|.|+|+++|. .++-||++.|||+.--.- ..|.-|..+++|+++||-|| +|++-
T Consensus 420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i 481 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLV 481 (572)
T ss_pred cccccchhHHHHHHHHhC----CCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHH
Confidence 478888888888888774 466799999999987763 56788999999977777666 58864
No 120
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=96.94 E-value=0.001 Score=68.55 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=48.4
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+.+|..+|-|+|+++|.. +++-|||+.|||+..-. -..|.-|..+++|+++||-|| +|++-
T Consensus 394 ~~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred CcchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchH
Confidence 35888988888888887752 15679999999998766 255778999999977666555 68864
No 121
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.90 E-value=0.002 Score=67.31 Aligned_cols=62 Identities=29% Similarity=0.396 Sum_probs=48.7
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS 302 (324)
..+++|..+|.|+|+++|. .++-|||+.|||+..-. -..|.-|..+++|+++||-||+ |++-
T Consensus 406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccc
Confidence 4577777777777776654 47789999999998765 5668888899999999998887 6554
No 122
>PRK08322 acetolactate synthase; Reviewed
Probab=96.89 E-value=0.0016 Score=66.80 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=46.6
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+.+|..+|.|+|+++|. .++-+++++|||+..-. -..|--|..+++|+++||-|| +|++-
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~ 466 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMI 466 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchH
Confidence 3478899888888888774 45679999999998754 244666888999966666555 78864
No 123
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=96.88 E-value=0.0015 Score=67.93 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=47.4
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++-|||++|||+..-. -..|.-|..+++|+++||-|| +|++.
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~ 479 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMV 479 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHH
Confidence 368888888888888774 34568999999998865 245888889999988777766 57753
No 124
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=96.84 E-value=0.0012 Score=68.22 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=47.0
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
..+++|..+|.|+|+++|. .++ +|+++|||+..-. -..|--|..+++|+++||-|| +|++-
T Consensus 401 ~~g~mG~glpaaiGa~lA~----~~r-~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~~ 462 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS----GKR-ILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEML 462 (535)
T ss_pred ccchhhhHHHHHHHHHhCC----CCC-eEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECCcccee
Confidence 3479999999999999884 234 4779999998765 356888899999977666665 68864
No 125
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.75 E-value=0.0014 Score=65.17 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=44.9
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCC-ccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAI 301 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNg-yAI 301 (324)
.+++|..+|.|+|+|+|.+ ++-|||+.|||+.--. -..|-.++.+++ |++.||-||+ |+.
T Consensus 220 ~GsMG~a~p~AlG~ala~p----~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~ 281 (361)
T TIGR03297 220 VGSMGHASQIALGLALARP----DQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDS 281 (361)
T ss_pred echhhhHHHHHHHHHHHCC----CCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccc
Confidence 5889999999999988753 5679999999997322 124667778886 7887777775 653
No 126
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=96.58 E-value=0.0042 Score=65.09 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=47.2
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIS 302 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIS 302 (324)
.+++|..+|.|+|+++|. .++-|+|+.|||+..-. -..|.-|..+++|+++||-|| +|++-
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i 507 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMV 507 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHH
Confidence 367888888888887774 45679999999998765 366888899999977766655 68763
No 127
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=95.83 E-value=0.012 Score=58.90 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=49.6
Q ss_pred CCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcC----CCEEEEEec
Q 020562 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME----APVVFICRN 296 (324)
Q Consensus 221 mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~----lPvIFv~eN 296 (324)
.|.|..-.-++-.---+-||-.+.+|.|++ +++.|-+|+|++|||++.+|-.-.+-..-.-++ =-|+=|.-=
T Consensus 124 ipSH~~p~tPGsIhEGGELGYaLshA~GA~----~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhL 199 (379)
T PF09364_consen 124 IPSHVSPETPGSIHEGGELGYALSHAFGAV----FDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHL 199 (379)
T ss_dssp B-SSS-TTSTT-S---SSTS-HHHHHHHHH----TT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE
T ss_pred CccccCcCCCCccCcCcchhhHHHHHhhcc----cCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEe
Confidence 677876665555555566666666666665 577899999999999999995332221111111 137777788
Q ss_pred CCcccccccccccc
Q 020562 297 NGWAISTNISEQFR 310 (324)
Q Consensus 297 NgyAIStP~~~Q~~ 310 (324)
|||-|+-|+--...
T Consensus 200 NG~KI~~pTil~r~ 213 (379)
T PF09364_consen 200 NGYKISNPTILARM 213 (379)
T ss_dssp -SBSSSSB-HHHHS
T ss_pred cCccccCCeEeeec
Confidence 99999999874443
No 128
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=95.49 E-value=0.018 Score=59.87 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=53.0
Q ss_pred ccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCC-EEEEEecCCcccccccccccc
Q 020562 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFR 310 (324)
Q Consensus 233 ~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~ 310 (324)
....+++|-.++-+.|+|+|.. ++.++.++|||++.+-- -| +.-.-.|++| .||+++|+||-|-.-.+. ++
T Consensus 411 q~~wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~qlTv-Qe-iStmir~gl~~~if~~NN~GYTIE~~IH~-~~ 482 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLTV-QE-ISTMIRWGLKPIIFLINNGGYTIEVEIHD-GP 482 (561)
T ss_pred EEEEeeccccchhhhhhhhccC----CceEEEEecCccceeeH-HH-HHHHHhcCCCcEEEEEeCCceEEEEeecC-CC
Confidence 3445778877777777777765 48899999999987752 22 4455678995 888888889999887776 44
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=94.47 E-value=0.048 Score=63.77 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=44.5
Q ss_pred ccCCccC--chhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHH--cCCCEEEEEecCC-cccc
Q 020562 235 ISSPIAT--QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV--MEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 235 ~ss~lGt--qlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~--~~lPvIFv~eNNg-yAIS 302 (324)
.-+.+|- .+|.|+|+++|. ++-|+|++|||+..-. -..|..|.. +++|+++||-||+ |+|-
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~ 822 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIF 822 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhh
Confidence 3366776 589999998874 4568999999998754 255666766 4999877776664 7664
No 130
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=93.95 E-value=0.08 Score=56.95 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=63.3
Q ss_pred CCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch----HHHHHHHHHHcCCCEEEEEec
Q 020562 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD----FHAALNFAAVMEAPVVFICRN 296 (324)
Q Consensus 221 mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd----fhEALNfAa~~~lPvIFv~eN 296 (324)
.+.|....-++...-.+.||-.+.+|-|+|+ ...+-+++|++|||+..+|- +|.=-..+-...--|+=|..=
T Consensus 137 i~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~l 212 (793)
T COG3957 137 IGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHL 212 (793)
T ss_pred cccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEe
Confidence 6778777777777777888887777776654 67789999999999888874 222222222333347777788
Q ss_pred CCccccccccccccCcc
Q 020562 297 NGWAISTNISEQFRSTA 313 (324)
Q Consensus 297 NgyAIStP~~~Q~~~~~ 313 (324)
|||.|+-|+.-....+.
T Consensus 213 NGykI~npT~lar~s~~ 229 (793)
T COG3957 213 NGYKIENPTVLARISDE 229 (793)
T ss_pred cceeccCceeeeecChH
Confidence 99999999886655443
No 131
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.77 Score=48.80 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhcc-------CCCCeEec-CCCchhhHh--
Q 020562 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL-------SADDFILP-QYREPGVLL-- 195 (324)
Q Consensus 126 ~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL-------~~~D~v~~-~YRe~g~~l-- 195 (324)
.+.+|+..++-+.|+....||.-+....-. +.-| ...|.|..- |...-| .-+|+|+. -||+.--++
T Consensus 153 ~l~keEr~~i~~Lmlksq~fD~FlatKFpT--vKRY-GgEGAESM~-aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 153 QLGKEERCEIAELMLKSQAFDNFLATKFPT--VKRY-GGEGAESML-AFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HhhHHHHHHHHHHHHhhhhHHHHHHhccch--hhhh-ccccHHHHH-HHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 578999999999999999999887652111 1111 233444332 222211 34677776 478766544
Q ss_pred hcCCCHHHHHHHHhhCcCCC------------------CCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcC
Q 020562 196 WRGYTLQQFANQVFANKADD------------------GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK 257 (324)
Q Consensus 196 ~RG~~l~~i~~q~~g~~~d~------------------~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g 257 (324)
...+++..++..+-|...=+ -||...+.| .-+.+.-|.|-+--|.|+|-+-+.....
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lh-----vtMlpNPSHLEAvNPVAmGKtR~rqqsr 303 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLH-----VTMLPNPSHLEAVNPVAMGKTRSRQQSR 303 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceE-----EEecCChhhhhccCchhhcchhHHHHhh
Confidence 35688998888888876421 234433433 2334556777777889998877654321
Q ss_pred --------------CCCEEEEEeCCCCC-ccchHHHHHHHHHH--cCC-CEEEEEecCCcccccccccc
Q 020562 258 --------------KDACAVAYTGDGGT-SEGDFHAALNFAAV--MEA-PVVFICRNNGWAISTNISEQ 308 (324)
Q Consensus 258 --------------~~~Vvv~~~GDGat-SeGdfhEALNfAa~--~~l-PvIFv~eNNgyAIStP~~~Q 308 (324)
+.-+-|..-||||. .+|-.+|.+|++-+ +++ -.|-+|-||+.+..||.+.-
T Consensus 304 ~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rG 372 (913)
T KOG0451|consen 304 GEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRG 372 (913)
T ss_pred cCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccc
Confidence 12255667799995 68999999999864 666 37888999999999998754
No 132
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=92.45 E-value=0.36 Score=50.28 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-C-cccccccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-G-WAISTNISEQ 308 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-g-yAIStP~~~Q 308 (324)
.+.+|-+ .|.|+|.++-..++-++|..||+|..=-- =-+.-+..++||||.||-|| | |+..+...+|
T Consensus 429 fgTMGVG----~Gfalaaa~~~P~~~V~~veGDsaFGfSa--ME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~ 497 (571)
T KOG1185|consen 429 FGTMGVG----LGFALAAALAAPDRKVVCVEGDSAFGFSA--MELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQ 497 (571)
T ss_pred ccccccc----hhHHHHHHhhCCCCeEEEEecCcccCcch--hhHHHHHHhcCCeEEEEecCCcccccCcccHHH
Confidence 3555554 45555666666888999999999875321 11345678999988888866 4 5555444444
No 133
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=87.22 E-value=1.2 Score=43.40 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=49.3
Q ss_pred ccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCC-CCccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 020562 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WA 300 (324)
Q Consensus 233 ~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDG-atSeGdfhEALNfAa~~~lPvIFv~eNNg-yA 300 (324)
..+.+.-|-+++.|.|+.+|.+ +.-|+++-||| +...| ...|--|...+..|..||-||. |+
T Consensus 66 ~~~hs~~gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYg 129 (294)
T COG1013 66 PWVHSLHGRAAAVATGIKLANP----ALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYG 129 (294)
T ss_pred CceeeccCcchhhHHHHHHhcc----CCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecc
Confidence 4455677888888888877766 44899999999 88888 4668888899999999998885 44
No 134
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=82.79 E-value=2.3 Score=43.08 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=64.0
Q ss_pred HHHHHHHHhhCcCCC--------CCCCCCCcccCCCCCcc-ccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCC
Q 020562 201 LQQFANQVFANKADD--------GKGRQMPIHYGSKKLNY-ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (324)
Q Consensus 201 l~~i~~q~~g~~~d~--------~kGr~mp~H~~~~~~~~-~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGat 271 (324)
..+-|++.||++.-+ -.|.|. .|...+.+-+ -+..+|||-.+|.|.|+ +....++-+|+.-||=-.
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqf-lhv~~pr~wincgqagplgwtipaalgv----~~adp~r~vvalsgdydf 449 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQF-LHVFKPRHWINCGQAGPLGWTIPAALGV----CAADPKRNVVAISGDYDF 449 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhh-hhhcCCcceeecCccCCcccccchhhce----eecCCCCceEEeecCchH
Confidence 445677788887532 134454 3555555544 34669999999998887 444556667888887322
Q ss_pred ccchHHHHHHHHHHcCCCEEEEEecCCc
Q 020562 272 SEGDFHAALNFAAVMEAPVVFICRNNGW 299 (324)
Q Consensus 272 SeGdfhEALNfAa~~~lPvIFv~eNNgy 299 (324)
--.-|-|..++.+++|-|-|+-||-|
T Consensus 450 --qfmieelavgaq~k~pyihv~vnnay 475 (592)
T COG3960 450 --QFLIEELAVGAQFKIPYIHVLVNNAY 475 (592)
T ss_pred --HHHHHHHhhhhcccCceEEEEecchH
Confidence 12358888999999999999999977
No 135
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=82.06 E-value=17 Score=38.64 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=84.2
Q ss_pred CceEEeCCCCCcccCCCCC----CCCHHHHHHHH------HHHHHH--HHHHHHHHHHHHcCCcccccCCCchHHHHHHH
Q 020562 107 PCFRVLDDNGELIKGSDFQ----QVSKEVAVKMY------SHMVTL--QVMDSVLYEAQRQGRFSFYLTTIGEEAINIGS 174 (324)
Q Consensus 107 p~~rvld~~G~~~~~~~~~----~ls~e~ll~lY------r~Mv~~--R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~ 174 (324)
..|-|+|+.|...|+.... ..+..+..+-+ +.-++- -.+.+++.+..++= ..-....|-..+...
T Consensus 306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~---~~~~~~~e~~~a~~l 382 (566)
T COG1165 306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQ---LAAEALTEAHLAAAL 382 (566)
T ss_pred CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHH---hcccCchhhHHHHHH
Confidence 4688999999999886543 22444444322 111221 12233333222221 111022222233345
Q ss_pred HhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhh
Q 020562 175 AAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 254 (324)
Q Consensus 175 aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k 254 (324)
+..|.++|.+|..- . +++.++- .++... +|. +++ +. .|.-+|-|.|.| |.|++.|.+
T Consensus 383 ~~~lp~~~~LFvgN-S--------mpVRdvd--~~~~~~---~~~--~v~-sN--RGA~GIDG~vST----A~Gi~~a~~ 439 (566)
T COG1165 383 ADLLPPQDQLFVGN-S--------MPVRDVD--ALGQLP---AGY--RVY-SN--RGASGIDGTVST----ALGIARATQ 439 (566)
T ss_pred HHhCCCCCeEEEec-C--------chhhhHH--HhccCc---cCc--eee-cC--CCccccchhHHH----HhhhhhhcC
Confidence 55678888888752 1 3444333 244431 122 221 11 233345556655 888888654
Q ss_pred hcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCC-EEEEEecCCcccc
Q 020562 255 MEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAIS 302 (324)
Q Consensus 255 ~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIS 302 (324)
. -++..+||=+.=.- --+|-+......| +|+++.|||=+|-
T Consensus 440 ~-----ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF 481 (566)
T COG1165 440 K-----PTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIF 481 (566)
T ss_pred C-----ceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceee
Confidence 2 28999999665322 1234445556667 7888888898885
No 136
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=81.97 E-value=35 Score=38.34 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=119.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcccccCCCchHHHHHHHHh------ccCCCCeEec-CCCchhhH
Q 020562 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYE-AQRQGRFSFYLTTIGEEAINIGSAA------ALSADDFILP-QYREPGVL 194 (324)
Q Consensus 123 ~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~-lqRqGri~fy~~~~GqEA~~VG~aa------AL~~~D~v~~-~YRe~g~~ 194 (324)
..+.++.|+.+.+++++..+-.||+-+-. .-.|.|. +-.|-|+..-++-. ...-+++|+. .||+.-=.
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNv 243 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNV 243 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHH
Confidence 34678999999999999999999987643 2234443 23455665433322 3345677776 58976543
Q ss_pred h--hcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCC--------Cc--cccccCCccCchhhhhHHHhhhhhcC-----
Q 020562 195 L--WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK--------LN--YITISSPIATQLPQAVGVAYSLKMEK----- 257 (324)
Q Consensus 195 l--~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~--------~~--~~~~ss~lGtqlp~AvG~A~A~k~~g----- 257 (324)
| ..|.+...+++|+-|+..-...-++..-|.|... .+ ....-|.|-..-|+..|.+-|..-..
T Consensus 244 L~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~ 323 (906)
T COG0567 244 LVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTER 323 (906)
T ss_pred HHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCcc
Confidence 3 4799999999999996632111222233432211 11 12233667777788889988866322
Q ss_pred CCCEEEEEeCCCCC-ccchHHHHHHHHHHc--CC-CEEEEEecCCcccccc
Q 020562 258 KDACAVAYTGDGGT-SEGDFHAALNFAAVM--EA-PVVFICRNNGWAISTN 304 (324)
Q Consensus 258 ~~~Vvv~~~GDGat-SeGdfhEALNfAa~~--~l-PvIFv~eNNgyAIStP 304 (324)
...+.+...||.|. .||-+.|.||+.... .. +.|=||-||+.+-.|.
T Consensus 324 ~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTs 374 (906)
T COG0567 324 DKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTS 374 (906)
T ss_pred ceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCC
Confidence 23577899999884 799999999999874 44 7999999999888877
No 137
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=76.35 E-value=5.8 Score=33.14 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=38.8
Q ss_pred hhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcc
Q 020562 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300 (324)
Q Consensus 245 ~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyA 300 (324)
.|+|+|.+.-+.+...++++.+|-|.++ ..+++-.|..-++|||+++-..+..
T Consensus 46 ~a~~~A~G~a~~~~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~ 98 (154)
T cd06586 46 GAAGAAAGYARAGGPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGIS 98 (154)
T ss_pred HHHHHHHHHHHhhCCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChh
Confidence 4667777766666655666666998763 5678888888899999999766643
No 138
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=63.52 E-value=9.7 Score=31.89 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=45.0
Q ss_pred EEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE--ecCCccccccccccccCccHHHHHHhhhc
Q 020562 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC--RNNGWAISTNISEQFRSTAITSFFFKFLS 323 (324)
Q Consensus 262 vv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~--eNNgyAIStP~~~Q~~~~~Ia~k~~~~~~ 323 (324)
.|++.||....|| |+..+.=.+...|.+.++ ++|.+.+-.+.+.....+.+..++..++.
T Consensus 53 fv~w~~dv~~~eg--~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 53 MLFWACSVAKPEG--YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEecCChHH--HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 6889999999988 666665566677965555 46777777777777778888888887764
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=58.36 E-value=13 Score=40.03 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=46.6
Q ss_pred ccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccc
Q 020562 231 NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIST 303 (324)
Q Consensus 231 ~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAISt 303 (324)
+-...+-..|+.+..|-|++++.. +.+++++|||+.-.--.- +|-.|...+.+++.+|-+|.+.--|
T Consensus 422 ~~~d~t~~mGssig~a~g~~~~~~-----k~~va~iGDsTF~HsGi~-~l~nAV~n~~~~~~vvLdN~~tAMT 488 (640)
T COG4231 422 NTVDTTTMMGSSIGIAGGLSFAST-----KKIVAVIGDSTFFHSGIL-ALINAVYNKANILVVVLDNRTTAMT 488 (640)
T ss_pred chhhhhhhccchhhhccccccccC-----CceEEEeccccccccCcH-HHHHHHhcCCCeEEEEEeccchhcc
Confidence 333444556666666666665443 679999999987655443 3777788899999999999875443
No 140
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=54.52 E-value=13 Score=32.98 Aligned_cols=31 Identities=13% Similarity=0.406 Sum_probs=24.2
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHH
Q 020562 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYS 137 (324)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr 137 (324)
|.+.++|.||+.-+.-...+-..|.+.+.++
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~ 148 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFR 148 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHH
Confidence 8899999999986544444567888888887
No 141
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=53.84 E-value=23 Score=30.19 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=34.9
Q ss_pred hhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 245 ~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
-|+++|.+..+.+.. ++++.-|-|.++ .-.+|--|...+.|+|+++-+-.
T Consensus 52 ~A~~~A~g~~r~~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 52 AAAEAAIGASAAGAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHHhhCCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 355666665555544 777777888777 45677777778899999986543
No 142
>PLN02527 aspartate carbamoyltransferase
Probab=45.86 E-value=2e+02 Score=28.11 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCc-c--cccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCC
Q 020562 125 QQVSKEVAVKMYSHMVTLQVMDSVL-YEAQRQGRF-S--FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (324)
Q Consensus 125 ~~ls~e~ll~lYr~Mv~~R~~D~~~-~~lqRqGri-~--fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~ 200 (324)
.+++++++..+++....++.....- ....-+|+. . |+=++.=--..=-..+.-|. ...++..-......+.+|.+
T Consensus 7 ~d~s~~el~~ll~~A~~~k~~~~~~~~~~~L~gk~v~llF~epStRTR~SFe~A~~~LG-g~~i~l~~~~~~s~~~kgEs 85 (306)
T PLN02527 7 QQFDREMLELLFEVAREMEKVERGSPGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLG-GEVLTTENAGEFSSAAKGET 85 (306)
T ss_pred hhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEEEcCCCchhHHHHHHHHHHcC-CCEEEeCCCCCccccCCCcC
Confidence 4789999999999888777632210 011134554 2 55554422222111222333 35555554322356788999
Q ss_pred HHHHHHHHhhCcCCCCCCC---CCCcccCCCCCccccccCC--ccCchhhhhHHHhhhhhc-C-CCCEEEEEeCCCCCcc
Q 020562 201 LQQFANQVFANKADDGKGR---QMPIHYGSKKLNYITISSP--IATQLPQAVGVAYSLKME-K-KDACAVAYTGDGGTSE 273 (324)
Q Consensus 201 l~~i~~q~~g~~~d~~kGr---~mp~H~~~~~~~~~~~ss~--lGtqlp~AvG~A~A~k~~-g-~~~Vvv~~~GDGatSe 273 (324)
+.+... .+++-.|..-=| +..++...+...+.-+++- ...|..|+..=.|.++-. | -+.+.|+++||+.-+
T Consensus 86 ~~Dta~-vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~- 163 (306)
T PLN02527 86 LEDTIR-TVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANG- 163 (306)
T ss_pred HHHHHH-HHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCC-
Confidence 988876 444444411001 0011111122233334442 357888999888888642 3 367999999999742
Q ss_pred chHHHHHHHHHHc-CCCEEEEE
Q 020562 274 GDFHAALNFAAVM-EAPVVFIC 294 (324)
Q Consensus 274 GdfhEALNfAa~~-~lPvIFv~ 294 (324)
--.|.-+..++.+ +.-|.++|
T Consensus 164 rv~~Sl~~~~~~~~g~~v~~~~ 185 (306)
T PLN02527 164 RTVRSLAYLLAKYEDVKIYFVA 185 (306)
T ss_pred hhHHHHHHHHHhcCCCEEEEEC
Confidence 3467777776776 66676666
No 143
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=41.07 E-value=30 Score=28.19 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCceEEeCCC-CCcccCCCCCCCCHHHHHHHHHHHHHHH
Q 020562 105 RVPCFRVLDDN-GELIKGSDFQQVSKEVAVKMYSHMVTLQ 143 (324)
Q Consensus 105 ~~p~~rvld~~-G~~~~~~~~~~ls~e~ll~lYr~Mv~~R 143 (324)
.-..++|+|.+ |++|. .++.|++++|++.|.-+.
T Consensus 66 ~~~vVkViD~~T~eVIR-----qIP~Ee~l~l~~~l~e~~ 100 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIR-----QIPPEELLDLAKRLRELV 100 (107)
T ss_dssp TEEEEEEEETTT-SEEE-----EE-HHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEE-----eCCcHHHHHHHHHHHHHh
Confidence 44788999996 78776 489999999999986543
No 144
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=39.53 E-value=58 Score=28.16 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHH-HHHHcCCCEEEEEecCCccc--ccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALN-fAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
.+|.-|- .+|+|-++.+.| ..++++.+ .... .-.++.+. .++.+++||++++...++.. ..+++
T Consensus 44 ~gIaE~~--~vg~A~GlA~~G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH 110 (156)
T cd07033 44 VGIAEQN--MVGIAAGLALHG-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTH 110 (156)
T ss_pred eChhHHH--HHHHHHHHHHCC-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCcEecCCCCccc
Confidence 3455444 233333333445 33344444 2232 23345555 99999999999999776654 55555
No 145
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=39.43 E-value=51 Score=34.72 Aligned_cols=69 Identities=25% Similarity=0.259 Sum_probs=46.4
Q ss_pred ccCCCCCccccccC---CccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 224 HYGSKKLNYITISS---PIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 224 H~~~~~~~~~~~ss---~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
||..++++-+-.++ ..|-++|.|.|+-. .+.+.+|+-.=||++.+--- .-|.-+-..++||-.++-||.
T Consensus 508 fy~w~kP~~~~tSGGLGtMGfGLPAAIGAsV----A~P~~iViDIDGDaSF~Mt~--~ELat~rq~~~PVKiLiLNNe 579 (675)
T KOG4166|consen 508 FYNWKKPRQWLTSGGLGTMGFGLPAAIGASV----ANPDAIVIDIDGDASFIMTV--QELATIRQENLPVKILILNNE 579 (675)
T ss_pred HhcccCccceeecCCccccccCcchhhcccc----cCcccEEEeccCCceeeeeh--HhhhhhhhcCCceEEEEecch
Confidence 33334444444444 45557888887755 46788999999999877542 224555678999999998885
No 146
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=39.41 E-value=39 Score=34.24 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=30.7
Q ss_pred CEEEEEeCCC-CCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 020562 260 ACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAI 301 (324)
Q Consensus 260 ~Vvv~~~GDG-atSeGdfhEALNfAa~~~lPvIFv~eNNg-yAI 301 (324)
.-|+++-||| +...| ..+|.-|...+-+|.+||-||. |+-
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~n 193 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSN 193 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCccccc
Confidence 3588999999 55777 4567778888999888888885 654
No 147
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=39.02 E-value=52 Score=27.76 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=34.8
Q ss_pred hhhhHHHhhhhhcCC-CCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 244 PQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 244 p~AvG~A~A~k~~g~-~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.-|+++|.+..+.+. ..++++..|=|.+ ...+++--|...++|+|+++-+..
T Consensus 44 ~~A~~~A~g~~~~~~~~~v~~~~~gpG~~---n~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 44 QGAVGMADGYARATGKPGVVLVTSGPGLT---NAVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCcHH---HHHHHHHHHHhhCCCEEEEeCCCc
Confidence 346677776666543 4555555565544 456888888888999999985543
No 148
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=35.94 E-value=37 Score=33.78 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHh
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFK 320 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~ 320 (324)
....+.+|..+++|||++|+--|+-++.-.++.--+..|+..+.+
T Consensus 140 a~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~ 184 (319)
T PRK05724 140 ALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLRE 184 (319)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHH
Confidence 345678889999999999999999887655533223345555443
No 149
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.14 E-value=1.2e+02 Score=24.91 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=34.8
Q ss_pred CCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC------Ccccccccc
Q 020562 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN------GWAISTNIS 306 (324)
Q Consensus 258 ~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN------gyAIStP~~ 306 (324)
++.+++.+-++|.+.+ ...+++.++...+.|+|.|..+. .+.|.+|..
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~~s~~~~d~~i~~~~~ 114 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDGDAKDLADVVIRVPAT 114 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCCcccccCCeEEECCCC
Confidence 4557777777774432 36778899999999999998876 466666654
No 150
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.94 E-value=1.2e+02 Score=24.11 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 257 g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
+++.+++++--.|.+ -+..+.+..|...++|+|.|+.|..
T Consensus 52 ~~~d~vi~is~sg~~--~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGET--RELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTT--HHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccc--hhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 456677777767755 5678999999999999999997643
No 151
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=31.96 E-value=54 Score=31.48 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
.-..+.+|..+++|||++|+--|+-++...+
T Consensus 87 a~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE 117 (256)
T PRK12319 87 ALRLMKQAEKFGRPVVTFINTAGAYPGVGAE 117 (256)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCcCCCHhHH
Confidence 3456788899999999999999988765544
No 152
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=31.70 E-value=77 Score=33.71 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=40.7
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEE-EecCCccccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI-CRNNGWAISTNI 305 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv-~eNNgyAIStP~ 305 (324)
|..|--+.-++| .|+.+.++=|++++|||+.-- .|.-|--+-.++.-++.+ .+|-||+-=-..
T Consensus 444 SCMGYEiaG~lG----~K~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~L 507 (617)
T COG3962 444 SCMGYEIAGGLG----AKAAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRL 507 (617)
T ss_pred cccccccccccc----cccCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhh
Confidence 444544433333 478888899999999998642 455566666778875544 466688754333
No 153
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.38 E-value=1.2e+02 Score=24.36 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=32.8
Q ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 256 ~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.+++.+++++--.|.+.| .-+++..|...++|+|.|+.|..
T Consensus 44 ~~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 44 LDEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 356667777777777765 78999999999999999998743
No 154
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.34 E-value=44 Score=33.18 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHH
Q 020562 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFF 319 (324)
Q Consensus 277 hEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~ 319 (324)
-..+.+|..+++|||++|+--|+-++...++.--+..|+..+.
T Consensus 141 ~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~ 183 (316)
T TIGR00513 141 LRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLR 183 (316)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999988765554422333444443
No 155
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=28.95 E-value=60 Score=34.70 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 278 AALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 278 EALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
..+.++..+++|+||+++.-||.+++-.++. +++....+.
T Consensus 392 rfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~----G~~~~~a~l 431 (569)
T PLN02820 392 HFIELCAQRGIPLLFLQNITGFMVGSRSEAS----GIAKAGAKM 431 (569)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCCCHHHHHh----hHHHHHHHH
Confidence 3466777899999999999999998776663 454444443
No 156
>smart00594 UAS UAS domain.
Probab=28.58 E-value=91 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=23.7
Q ss_pred EEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 262 vv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.|++-+|-.+.|| ++-.+.=.+.+.|.+.|+.-|+
T Consensus 63 fv~~~~dv~~~eg--~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 63 FIFWQVDVDTSEG--QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred EEEEEecCCChhH--HHHHHhcCcCCCCEEEEEecCC
Confidence 6777789888887 4444444455779777776664
No 157
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=28.29 E-value=38 Score=35.18 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 308 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q 308 (324)
.-+.++++..+++|+||+|+--||.++.-.++.
T Consensus 318 ~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~ 350 (493)
T PF01039_consen 318 AARFIRLCDAFNIPLVTLVDTPGFMPGPEAERA 350 (493)
T ss_dssp HHHHHHHHHHTT--EEEEEEECEB--SHHHHHT
T ss_pred HHHHHHHHHhhCCceEEEeecccccccchhhhc
Confidence 345688888999999999999999998776654
No 158
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=27.07 E-value=1.1e+02 Score=31.82 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHH--------HcCCCEEEEEecCCcccc
Q 020562 277 HAALNFAA--------VMEAPVVFICRNNGWAIS 302 (324)
Q Consensus 277 hEALNfAa--------~~~lPvIFv~eNNgyAIS 302 (324)
..-.|-++ .+++||+|+..|.+.+-.
T Consensus 230 dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~ 263 (464)
T PRK11892 230 DQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARV 263 (464)
T ss_pred HHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCC
Confidence 34457777 889999999998876543
No 159
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=27.06 E-value=1.2e+02 Score=26.64 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=35.8
Q ss_pred hhhHHHhhhh-hcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 245 QAVGVAYSLK-MEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 245 ~AvG~A~A~k-~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.|+.+|.+.. ..++..|+++..|=|.++ .--++--|..-++|||+|+-+..
T Consensus 49 ~A~~mA~gyar~tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 49 AAAFAASAEAKLTGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCc
Confidence 3444554444 345677888888888777 35677777788999999996554
No 160
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=25.76 E-value=74 Score=31.02 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=24.8
Q ss_pred CCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE
Q 020562 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC 294 (324)
Q Consensus 257 g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~ 294 (324)
+++.|++|.+|||...| +.|.+++.|++=|-
T Consensus 227 g~p~~~f~~IGDG~eEe-------~aAk~l~wPFw~I~ 257 (274)
T TIGR01658 227 GHPKVRFCAIGDGWEEC-------TAAQAMNWPFVKID 257 (274)
T ss_pred CCCCceEEEeCCChhHH-------HHHHhcCCCeEEee
Confidence 45579999999997766 66788999987653
No 161
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=25.72 E-value=1.1e+02 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=35.2
Q ss_pred hhHHHhhhh-hcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 246 AVGVAYSLK-MEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 246 AvG~A~A~k-~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
|+.+|-+.- ..++..|+++..|=|.++ .--++--|..-+.|||+|+-+-.
T Consensus 47 A~~mAdgyar~sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 97 (162)
T cd07037 47 AAFFALGLAKASGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRP 97 (162)
T ss_pred HHHHHHHHHHhhCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCC
Confidence 555555543 445677777777777776 45777778888999999996543
No 162
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=25.66 E-value=64 Score=33.45 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
.-..+.+|..+++|||++|+--|+-.+.-.++.--+..||.+..++
T Consensus 210 AlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~am 255 (431)
T PLN03230 210 ALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREM 255 (431)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHH
Confidence 3445788889999999999999988876666533334466555443
No 163
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=25.57 E-value=2.4e+02 Score=22.21 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=29.4
Q ss_pred CCCEEEEEeCCCCCccc--hHHHHHHHHHHcCCCEEEEEe
Q 020562 258 KDACAVAYTGDGGTSEG--DFHAALNFAAVMEAPVVFICR 295 (324)
Q Consensus 258 ~~~Vvv~~~GDGatSeG--dfhEALNfAa~~~lPvIFv~e 295 (324)
.....+++++||....+ +..+.+..+...+..+.+|--
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~ 139 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGI 139 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEc
Confidence 35678889999998887 588888888888777666543
No 164
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=24.92 E-value=1.3e+02 Score=32.55 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 275 DFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 275 dfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
-.++++.+++..++||+||.-..+++. ..|++
T Consensus 434 r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH 467 (653)
T TIGR00232 434 YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH 467 (653)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc
Confidence 567899999999999999997766554 45665
No 165
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=24.33 E-value=92 Score=31.01 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhhh
Q 020562 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKFL 322 (324)
Q Consensus 280 LNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~~ 322 (324)
|.+|-.+++|+|++|+--|---+.-.++.=-++.||.++....
T Consensus 143 m~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~ 185 (317)
T COG0825 143 MKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMA 185 (317)
T ss_pred HHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHh
Confidence 6678889999999998888666666666666777888776653
No 166
>PRK08452 flagellar protein FlaG; Provisional
Probab=24.28 E-value=77 Score=27.40 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=30.4
Q ss_pred ccccccCCCCCCCCceEEeCCC-CCcccCCCCCCCCHHHHHHHHHHHHHH
Q 020562 94 EMRFIPESSEKRVPCFRVLDDN-GELIKGSDFQQVSKEVAVKMYSHMVTL 142 (324)
Q Consensus 94 ~~~~~~~~~~~~~p~~rvld~~-G~~~~~~~~~~ls~e~ll~lYr~Mv~~ 142 (324)
.++|.-.. ...-..++|+|.+ |++|. .+++|++++|++.|..+
T Consensus 72 ~L~F~~de-~~~~~vVkVvD~~T~eVIR-----qIP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 72 NIRFGYND-KIKGLVVSVKEANGGKVIR-----EIPSKEAIELMEYMRDV 115 (124)
T ss_pred ceEEEEcC-CCCcEEEEEEECCCCceee-----eCCCHHHHHHHHHHHHh
Confidence 34554322 2334789999988 67776 48899999999998553
No 167
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.26 E-value=2.2e+02 Score=24.78 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=41.4
Q ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC--------ccccccccccccCccHHHHHHhhhcC
Q 020562 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG--------WAISTNISEQFRSTAITSFFFKFLSH 324 (324)
Q Consensus 256 ~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg--------yAIStP~~~Q~~~~~Ia~k~~~~~~~ 324 (324)
..++.+++++--=|. ..+..+++..|...++|+|.|+.+.+ +.|.+|.. ..++++-.+.|+-|
T Consensus 99 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~----~~~~~~~~~~~~~~ 169 (177)
T cd05006 99 GQPGDVLIGISTSGN--SPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSD----DTPRIQEVHLLIGH 169 (177)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC----ChHHHHHHHHHHHH
Confidence 355666666554443 44789999999999999999997743 34444433 33566666666544
No 168
>PTZ00089 transketolase; Provisional
Probab=23.83 E-value=1.4e+02 Score=32.39 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 270 GTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 270 atSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
...+ ..++.+..++..++||+|++...+.++ ..||+
T Consensus 437 ~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~TH 474 (661)
T PTZ00089 437 NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTH 474 (661)
T ss_pred HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCc
Confidence 5555 788999999999999999996666554 34444
No 169
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=23.64 E-value=1.5e+02 Score=26.34 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=27.8
Q ss_pred CCEEEEEeCCCCCccc--hHHHHHHHHHHcCCC-EEEEEec
Q 020562 259 DACAVAYTGDGGTSEG--DFHAALNFAAVMEAP-VVFICRN 296 (324)
Q Consensus 259 ~~Vvv~~~GDGatSeG--dfhEALNfAa~~~lP-vIFv~eN 296 (324)
.++++-|+-+|++|+| +|-|.=-.+=..+-| |+|.+++
T Consensus 24 ~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~ 64 (145)
T KOG3445|consen 24 RRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEP 64 (145)
T ss_pred eEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEec
Confidence 4689999999999999 777765444444555 6666654
No 170
>PRK05899 transketolase; Reviewed
Probab=23.33 E-value=1.3e+02 Score=32.01 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCccCchhhhhHHHhhhhhcC-CCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEK-KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g-~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
.+|+-|- ++|+|-++.+.| ...++.+|. ... .-.++++.+++..++||+|+....|+.. ..|++
T Consensus 372 ~GIaE~~--~vg~A~GlA~~G~~~pv~~t~~---~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH 438 (624)
T PRK05899 372 YGVREFA--MAAIANGLALHGGFIPFGGTFL---VFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH 438 (624)
T ss_pred eChhHHH--HHHHHHHHHHcCCCeEEEEEcH---HHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc
Confidence 3555554 344444444556 433333222 222 5778899999999999999999888765 45666
No 171
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=23.14 E-value=1.1e+02 Score=27.44 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=31.7
Q ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEec
Q 020562 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN 296 (324)
Q Consensus 256 ~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eN 296 (324)
++.++ .+.++|-|+.+.+..-+...+|..+++||+--...
T Consensus 25 k~AKR-PvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 25 KRAKR-PLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred HcCCC-cEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 33344 56778999998899999999999999999865543
No 172
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.10 E-value=2.3e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=31.6
Q ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 256 ~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
.+++.+++++---|. .-+.-+++..|...++|+|.++.|.+
T Consensus 45 ~~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 45 VTPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 356677777755553 34678999999999999999999864
No 173
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=23.05 E-value=51 Score=26.06 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=21.5
Q ss_pred CCceEEeCCCCCcccCCCCCCCCHHHHHHHHHH
Q 020562 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSH 138 (324)
Q Consensus 106 ~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~ 138 (324)
-|...++|.+|+.++.-.....+.|++.++...
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 399999999999877655567888888887653
No 174
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.01 E-value=2.4e+02 Score=25.71 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=34.7
Q ss_pred hhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 254 KMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 254 k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
...+++.+++++-.-|.+.+ .-+++..|...++|+|.+..|.+
T Consensus 109 ~~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 34566778888877776555 78999999999999999998764
No 175
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.81 E-value=1.6e+02 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=33.6
Q ss_pred CCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Q 020562 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (324)
Q Consensus 257 g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN 297 (324)
+++.|++.+-..|.+.+ ..+++..|...++|+|.|+.|.
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~ 155 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNP 155 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCC
Confidence 56778888888887766 8999999999999999999875
No 176
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=22.66 E-value=1e+02 Score=24.77 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHcCCCEEEEEecCCcccccccc-ccccCccHHHHHH
Q 020562 273 EGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-EQFRSTAITSFFF 319 (324)
Q Consensus 273 eGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~-~Q~~~~~Ia~k~~ 319 (324)
+|+|.||++.|...+-|++..+.++.-.-+-... +....+.+.+.+.
T Consensus 3 ~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~ 50 (114)
T cd02958 3 QGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR 50 (114)
T ss_pred cCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH
Confidence 6899999999999999988888776654333322 2344445555543
No 177
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=22.28 E-value=1.5e+02 Score=25.86 Aligned_cols=50 Identities=24% Similarity=0.058 Sum_probs=32.5
Q ss_pred hhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 246 AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
|+.+|.+.-+..+..|+++.-|=|.++ .--++--|..-+.|||+|+-+..
T Consensus 47 A~~mA~gyar~t~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 47 AGYAADGYARVKGLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHhhCCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 444554444333455666666777665 45677778888999999996554
No 178
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.96 E-value=3.4e+02 Score=21.94 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCCEEEEEeCCCCCccc-hHHHHHHHHHHcCCCEEEEEecC
Q 020562 258 KDACAVAYTGDGGTSEG-DFHAALNFAAVMEAPVVFICRNN 297 (324)
Q Consensus 258 ~~~Vvv~~~GDGatSeG-dfhEALNfAa~~~lPvIFv~eNN 297 (324)
....+++++.||..+.+ +..+++.-....+++++.|.-.+
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 45568899999988775 47788888777888888775543
No 179
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=21.84 E-value=69 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.0
Q ss_pred CCCCceEEeCCCCCcccC
Q 020562 104 KRVPCFRVLDDNGELIKG 121 (324)
Q Consensus 104 ~~~p~~rvld~~G~~~~~ 121 (324)
..+||.||++.+|.+...
T Consensus 47 ~~vP~HRVv~~~g~~~~~ 64 (79)
T cd06445 47 ILIPCHRVVRSDGGLGGY 64 (79)
T ss_pred CCCCceeEECCCCCcCCC
Confidence 468999999999988653
No 180
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=21.66 E-value=48 Score=27.57 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=26.9
Q ss_pred EEEEeCCCCCccchHHHHHHHHHHcCCCEEE
Q 020562 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVF 292 (324)
Q Consensus 262 vv~~~GDGatSeGdfhEALNfAa~~~lPvIF 292 (324)
.+.++|.|+...|..-|...+|..+++||+-
T Consensus 14 P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 14 PVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred EEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 5778899999999999999999999999943
No 181
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=21.54 E-value=1.7e+02 Score=29.13 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=31.8
Q ss_pred hhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Q 020562 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (324)
Q Consensus 243 lp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg 298 (324)
+..|.|+++|-+ . +++..-++..+ --+|+|++|+-..+|+|+++-+-.
T Consensus 61 ~~~a~GAs~aG~----R--a~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 61 INMVYGAAATGK----R--VMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHhhCC----C--EEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC
Confidence 445666666633 3 55555333333 358999999999999888776654
No 182
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=21.01 E-value=68 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccc
Q 020562 278 AALNFAAVMEAPVVFICRNNGWAIS 302 (324)
Q Consensus 278 EALNfAa~~~lPvIFv~eNNgyAIS 302 (324)
|-++.|..+++|||||+.-+.+--.
T Consensus 1 ei~~~a~r~~i~vi~Van~~h~~~~ 25 (130)
T PF02639_consen 1 EIIRVAKRYGIPVIFVANYSHRLPR 25 (130)
T ss_pred CHHHHHHHHCCEEEEEeCCCccCCC
Confidence 4578899999999999998876555
No 183
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=20.80 E-value=2e+02 Score=28.74 Aligned_cols=66 Identities=23% Similarity=0.164 Sum_probs=33.1
Q ss_pred CccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcC--------CCEEEEEecCCccc-ccccccc
Q 020562 238 PIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME--------APVVFICRNNGWAI-STNISEQ 308 (324)
Q Consensus 238 ~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~--------lPvIFv~eNNgyAI-StP~~~Q 308 (324)
+|+-|- ++|+|-++.+.|..-++..++.| ...=-|..-.|-++.++ +||+|++.+ |... ..+++.|
T Consensus 80 GIAEq~--~vg~AaGlA~~G~~P~v~~~~~~--f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~tH~~ 154 (356)
T PLN02683 80 PITEAG--FTGIGVGAAYAGLKPVVEFMTFN--FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQHSQ 154 (356)
T ss_pred chhHHH--HHHHHHHHHHCCCEEEEEEehhh--HHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCcccc
Confidence 455443 44444444445554443332332 11222233456677666 999999988 4322 2355533
No 184
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=20.78 E-value=2.1e+02 Score=28.33 Aligned_cols=164 Identities=10% Similarity=0.001 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCc-c--cccCCCchHHHHHHHH-hccCCCCeEecCCCchhhHhhcCC
Q 020562 125 QQVSKEVAVKMYSHMVTLQVMDSVLY-EAQRQGRF-S--FYLTTIGEEAINIGSA-AALSADDFILPQYREPGVLLWRGY 199 (324)
Q Consensus 125 ~~ls~e~ll~lYr~Mv~~R~~D~~~~-~lqRqGri-~--fy~~~~GqEA~~VG~a-aAL~~~D~v~~~YRe~g~~l~RG~ 199 (324)
.+++++++..+++....++.....-. ...-+|+. . |+=++.=--. ..-+| .-|. .+.++.. .....+.+|-
T Consensus 14 ~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~epSTRTR~-SFe~A~~~LG-g~~i~l~--~~~ss~~kgE 89 (334)
T PRK01713 14 VNHTEREIKYLLDLSRDLKRAKYAGTEQQRLKGKNIALIFEKTSTRTRC-AFEVAAYDQG-AQVTYID--PNSSQIGHKE 89 (334)
T ss_pred HhCCHHHHHHHHHHHHHHHhhhhccCccccCCCCEEEEEeCCCCchHHH-HHHHHHHHcC-CeEEEcC--CccccCCCCc
Confidence 47899999999998877765211100 01134665 2 5555542211 11222 2233 3556543 2345678899
Q ss_pred CHHHHHHHHhhCcCCCCCCCC---CCcccCCCCCcccccc-CCccCchhhhhHHHhhhhhc-C--CCCEEEEEeCCCCCc
Q 020562 200 TLQQFANQVFANKADDGKGRQ---MPIHYGSKKLNYITIS-SPIATQLPQAVGVAYSLKME-K--KDACAVAYTGDGGTS 272 (324)
Q Consensus 200 ~l~~i~~q~~g~~~d~~kGr~---mp~H~~~~~~~~~~~s-s~lGtqlp~AvG~A~A~k~~-g--~~~Vvv~~~GDGatS 272 (324)
++.+... .+++-.|..-=|. ...+...+...+.-++ ..-..|..||..=.|.++-. + -+.+.|+|+||+..
T Consensus 90 sl~DTar-vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~- 167 (334)
T PRK01713 90 SMKDTAR-VLGRMYDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN- 167 (334)
T ss_pred CHHHHHH-HHHHhCCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc-
Confidence 9888876 4444334110010 0111111111221122 22357888998888888643 3 36789999999864
Q ss_pred cchHHHHHHHHHHcCCCEEEEEe
Q 020562 273 EGDFHAALNFAAVMEAPVVFICR 295 (324)
Q Consensus 273 eGdfhEALNfAa~~~lPvIFv~e 295 (324)
+-.|.-+..++.+++.|.+++-
T Consensus 168 -~v~~Sl~~~~~~~g~~v~~~~P 189 (334)
T PRK01713 168 -NMGNSLLLIGAKLGMDVRICAP 189 (334)
T ss_pred -CHHHHHHHHHHHcCCEEEEECC
Confidence 3788888888999998887763
No 185
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=20.38 E-value=1.4e+02 Score=30.95 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred hhhhHHHhhhh-hcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEe
Q 020562 244 PQAVGVAYSLK-MEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (324)
Q Consensus 244 p~AvG~A~A~k-~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~e 295 (324)
..|+.+|.+.. ..++..|++|..|=|+++- --++--|-.-+.|||+|+=
T Consensus 56 ~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g 105 (557)
T PRK08199 56 GGAAMMAEAYGKLTGRPGICFVTRGPGATNA---SIGVHTAFQDSTPMILFVG 105 (557)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEec
Confidence 44666776664 4556788888888888873 4566666677999999984
No 186
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.37 E-value=5.5e+02 Score=21.97 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=58.5
Q ss_pred cCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchH
Q 020562 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (324)
Q Consensus 197 RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdf 276 (324)
...|++++....-.. +..+..+|+..+++.+.+--+.-.++.++.+.+-+.+-|--.+.++++
T Consensus 39 ~~vp~e~i~~~a~~~-----------------~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~ 101 (137)
T PRK02261 39 VMTSQEEFIDAAIET-----------------DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDF 101 (137)
T ss_pred CCCCHHHHHHHHHHc-----------------CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccCh
Confidence 347889998755443 356778888889888888777766666666667778888777788888
Q ss_pred HHHHHHHHHcCCCEEE
Q 020562 277 HAALNFAAVMEAPVVF 292 (324)
Q Consensus 277 hEALNfAa~~~lPvIF 292 (324)
.|-...+..++.-.||
T Consensus 102 ~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 102 EEVEKKFKEMGFDRVF 117 (137)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 8777777776655555
No 187
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=20.36 E-value=1e+02 Score=29.02 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=32.7
Q ss_pred eCCCCCcccCCCCCCCCHHHHHHHHHHHH-HH----------HHHHHHHHHHHHcCC
Q 020562 112 LDDNGELIKGSDFQQVSKEVAVKMYSHMV-TL----------QVMDSVLYEAQRQGR 157 (324)
Q Consensus 112 ld~~G~~~~~~~~~~ls~e~ll~lYr~Mv-~~----------R~~D~~~~~lqRqGr 157 (324)
.|.+|+++.....+.+++|++.+....+. -. +.=-.++|++.|+|.
T Consensus 84 ~D~~G~v~~~~~~~~it~~~i~~~l~~f~g~~~q~~p~~sa~kv~GkraYelAR~G~ 140 (226)
T cd02868 84 FFHTGRVIEKTTYDHITREKIERLLAVIQSGHQQKAFELCSVDDQSQQAAELAARGL 140 (226)
T ss_pred CCCCCCEEEecCCCCCCHHHHHHHHHHhhCCceEECCceEEEeeCCHHHHHHHHCCC
Confidence 57899998877666799999998888775 11 111356677777775
No 188
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=20.09 E-value=1.5e+02 Score=34.52 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=46.0
Q ss_pred ccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccc
Q 020562 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS 302 (324)
Q Consensus 233 ~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIS 302 (324)
.......|+.+..++|.+-+.. +.-+|..+|||+.-.--.- ||--|-.-+.+++++|-+|..---
T Consensus 464 ~~~~~~MG~~g~~~~G~a~~~~----~~~v~a~iGDgTf~HSG~~-al~~AV~~~~nit~~IL~N~~tAM 528 (1159)
T PRK13030 464 TTGLTQMGGEGVDWIGHAPFTE----TKHVFQNLGDGTYFHSGSL-AIRQAVAAGANITYKILYNDAVAM 528 (1159)
T ss_pred cceeeccCccchhhceeccccC----CCCEEEEeccchhhhcCHH-HHHHHHhcCCCeEEEEEeCCcccc
Confidence 3355677888888888877632 2359999999987543333 556666778899999999986443
Done!