Query 020562
Match_columns 324
No_of_seqs 213 out of 1687
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 5E-59 1.7E-63 458.2 23.0 242 80-321 5-246 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 3.1E-52 1.1E-56 411.3 20.9 216 105-321 50-266 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 1.8E-49 6.3E-54 386.6 18.3 209 104-321 18-226 (368)
4 2ozl_A PDHE1-A type I, pyruvat 100.0 2.2E-48 7.4E-53 379.0 19.4 193 122-316 26-219 (365)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 1.2E-47 4E-52 372.5 20.9 217 104-321 11-228 (367)
6 2jgd_A 2-oxoglutarate dehydrog 100.0 8.7E-38 3E-42 334.4 7.3 213 105-320 169-414 (933)
7 2yic_A 2-oxoglutarate decarbox 100.0 3.8E-37 1.3E-41 327.5 5.7 212 105-320 89-342 (868)
8 2xt6_A 2-oxoglutarate decarbox 100.0 1.5E-36 5.2E-41 329.6 7.3 210 106-320 335-587 (1113)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 99.9 8.1E-25 2.8E-29 224.6 9.6 172 121-309 17-193 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 99.9 1.2E-23 4.1E-28 216.4 7.8 170 122-308 20-194 (629)
11 3rim_A Transketolase, TK; TPP, 99.8 5.4E-20 1.8E-24 192.3 13.4 170 141-321 29-230 (700)
12 1r9j_A Transketolase; domains, 99.8 1E-18 3.5E-23 181.5 14.5 172 139-321 10-210 (673)
13 3mos_A Transketolase, TK; thia 99.8 3.9E-18 1.3E-22 175.6 16.6 187 125-321 3-207 (616)
14 1gpu_A Transketolase; transfer 99.8 2.4E-18 8E-23 179.0 12.8 172 139-321 12-210 (680)
15 1itz_A Transketolase; calvin c 99.7 6.4E-18 2.2E-22 175.6 13.9 183 125-321 9-221 (675)
16 3kom_A Transketolase; rossmann 99.7 7E-18 2.4E-22 175.3 11.5 171 140-321 11-210 (663)
17 2e6k_A Transketolase; structur 99.7 9.8E-18 3.4E-22 173.5 12.3 172 139-321 12-212 (651)
18 2r8o_A Transketolase 1, TK 1; 99.7 1.7E-17 6E-22 172.1 12.9 172 139-321 8-208 (669)
19 3uk1_A Transketolase; structur 99.7 2.6E-17 8.9E-22 172.3 13.1 172 139-321 49-249 (711)
20 3l84_A Transketolase; TKT, str 99.7 2.2E-17 7.4E-22 170.9 11.8 171 139-321 10-205 (632)
21 3m49_A Transketolase; alpha-be 99.7 7.1E-17 2.4E-21 168.5 12.1 170 141-321 36-234 (690)
22 2qtc_A Pyruvate dehydrogenase 99.7 1.2E-16 4.2E-21 170.7 13.0 158 155-321 104-285 (886)
23 3ahc_A Phosphoketolase, xylulo 99.0 3.1E-10 1.1E-14 120.7 5.5 97 221-321 159-260 (845)
24 4feg_A Pyruvate oxidase; carba 98.8 1.9E-09 6.6E-14 109.8 3.8 81 235-321 418-509 (603)
25 2vk8_A Pyruvate decarboxylase 98.7 3.4E-09 1.2E-13 106.6 1.5 69 234-304 410-479 (563)
26 1q6z_A BFD, BFDC, benzoylforma 98.6 1.7E-08 5.7E-13 100.8 2.6 63 237-305 401-464 (528)
27 1v5e_A Pyruvate oxidase; oxido 98.5 5E-08 1.7E-12 99.1 4.2 65 235-305 411-476 (590)
28 2uz1_A Benzaldehyde lyase; thi 98.5 4.5E-08 1.5E-12 98.6 2.9 66 235-304 417-483 (563)
29 1ozh_A ALS, acetolactate synth 98.4 7E-08 2.4E-12 97.4 3.0 64 235-304 418-482 (566)
30 2iht_A Carboxyethylarginine sy 98.4 7.3E-08 2.5E-12 97.4 2.9 64 235-304 434-498 (573)
31 2pan_A Glyoxylate carboligase; 98.4 6.8E-08 2.3E-12 98.4 2.2 65 234-304 439-504 (616)
32 2pgn_A Cyclohexane-1,2-dione h 98.4 8.6E-08 3E-12 97.2 2.3 65 235-305 422-487 (589)
33 2vbf_A Branched-chain alpha-ke 98.4 1.2E-07 4.1E-12 95.6 2.7 65 234-304 422-487 (570)
34 2vbi_A Pyruvate decarboxylase; 98.3 1.3E-07 4.4E-12 95.3 2.7 66 235-306 407-473 (566)
35 2wvg_A PDC, pyruvate decarboxy 98.3 2.2E-07 7.5E-12 93.7 4.1 66 235-306 411-477 (568)
36 1ybh_A Acetolactate synthase, 98.3 1.7E-07 5.7E-12 95.0 2.4 63 235-303 424-487 (590)
37 1ovm_A Indole-3-pyruvate decar 98.3 1.3E-07 4.4E-12 94.8 1.5 63 235-303 406-469 (552)
38 1t9b_A Acetolactate synthase, 98.2 3.1E-07 1.1E-11 95.3 2.4 65 234-304 510-575 (677)
39 2nxw_A Phenyl-3-pyruvate decar 98.2 3E-07 1E-11 92.8 1.2 63 235-303 420-483 (565)
40 2c31_A Oxalyl-COA decarboxylas 98.1 1.9E-06 6.6E-11 86.8 4.4 62 234-302 423-486 (568)
41 2x7j_A 2-succinyl-5-enolpyruvy 98.1 1.1E-06 3.8E-11 89.4 2.5 61 236-303 454-515 (604)
42 3eya_A Pyruvate dehydrogenase 98.0 2.7E-06 9.1E-11 85.5 4.6 63 235-303 404-467 (549)
43 2q28_A Oxalyl-COA decarboxylas 98.0 1.7E-06 5.8E-11 87.0 2.6 61 234-301 418-480 (564)
44 3hww_A 2-succinyl-5-enolpyruvy 97.8 5.3E-06 1.8E-10 83.6 1.3 60 235-302 415-475 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 97.6 1.6E-05 5.4E-10 80.5 1.5 56 240-303 439-495 (578)
46 2c42_A Pyruvate-ferredoxin oxi 76.8 1.7 5.9E-05 48.3 4.2 40 259-300 953-994 (1231)
47 3mos_A Transketolase, TK; thia 53.4 26 0.00089 35.8 7.2 54 246-302 367-420 (616)
48 3ibs_A Conserved hypothetical 39.7 38 0.0013 28.3 5.0 37 259-295 111-147 (218)
49 2fwh_A Thiol:disulfide interch 39.4 37 0.0013 26.3 4.6 37 102-138 88-125 (134)
50 2x5n_A SPRPN10, 26S proteasome 37.1 37 0.0013 29.2 4.6 35 260-294 108-142 (192)
51 2e6k_A Transketolase; structur 35.3 50 0.0017 33.9 6.0 58 246-306 409-468 (651)
52 2o1s_A 1-deoxy-D-xylulose-5-ph 35.3 33 0.0011 34.9 4.5 60 246-308 373-433 (621)
53 3f9u_A Putative exported cytoc 35.1 64 0.0022 25.9 5.6 37 103-140 128-165 (172)
54 2r8o_A Transketolase 1, TK 1; 34.8 56 0.0019 33.6 6.2 64 238-306 408-473 (669)
55 1itz_A Transketolase; calvin c 34.6 53 0.0018 33.9 6.0 58 246-306 426-486 (675)
56 1zzo_A RV1677; thioredoxin fol 30.6 35 0.0012 25.4 3.0 35 103-139 99-133 (136)
57 1lu4_A Soluble secreted antige 29.4 39 0.0013 25.3 3.1 35 103-139 97-134 (136)
58 2hc5_A ORF 99, hypothetical pr 28.9 36 0.0012 27.8 3.0 33 105-142 67-100 (117)
59 4evm_A Thioredoxin family prot 28.9 35 0.0012 25.2 2.7 35 103-138 102-136 (138)
60 3or5_A Thiol:disulfide interch 28.8 51 0.0018 25.7 3.8 37 103-140 114-150 (165)
61 2ozl_B PDHE1-B, pyruvate dehyd 28.4 28 0.00095 32.8 2.5 63 237-306 67-140 (341)
62 2lja_A Putative thiol-disulfid 27.9 57 0.0019 25.1 3.9 36 103-139 106-141 (152)
63 1sen_A Thioredoxin-like protei 26.8 93 0.0032 25.2 5.2 37 104-140 102-147 (164)
64 3fk8_A Disulphide isomerase; A 26.3 77 0.0026 24.0 4.4 36 104-139 90-131 (133)
65 2ju5_A Thioredoxin disulfide i 25.7 62 0.0021 25.8 3.9 35 103-139 114-150 (154)
66 3fkf_A Thiol-disulfide oxidore 24.7 47 0.0016 25.2 2.9 34 103-140 112-145 (148)
67 1gpu_A Transketolase; transfer 24.7 73 0.0025 32.8 5.0 57 246-306 421-481 (680)
68 2l5o_A Putative thioredoxin; s 24.1 74 0.0025 24.4 3.9 37 103-140 104-140 (153)
69 3raz_A Thioredoxin-related pro 23.8 79 0.0027 24.5 4.1 37 103-140 103-139 (151)
70 2l5l_A Thioredoxin; structural 22.7 77 0.0026 24.4 3.8 36 102-139 89-124 (136)
71 3kom_A Transketolase; rossmann 22.4 1.3E+02 0.0045 31.0 6.4 64 238-306 409-474 (663)
72 3lor_A Thiol-disulfide isomera 22.3 72 0.0025 24.7 3.6 37 103-140 118-154 (160)
73 1r9j_A Transketolase; domains, 22.1 1.3E+02 0.0044 31.0 6.2 57 246-306 414-473 (673)
74 3ewl_A Uncharacterized conserv 21.9 66 0.0023 24.4 3.2 33 103-139 107-139 (142)
75 1vrg_A Propionyl-COA carboxyla 21.9 53 0.0018 33.2 3.2 43 278-320 356-398 (527)
76 3ha9_A Uncharacterized thiored 21.6 48 0.0016 26.2 2.4 34 103-139 128-162 (165)
77 3eyt_A Uncharacterized protein 21.6 68 0.0023 24.9 3.3 37 103-140 115-151 (158)
78 3n6r_B Propionyl-COA carboxyla 21.2 49 0.0017 33.6 2.8 42 279-320 365-406 (531)
79 2f9i_A Acetyl-coenzyme A carbo 20.4 65 0.0022 30.4 3.4 31 276-306 149-179 (327)
80 2f9y_A Acetyl-COA carboxylase, 20.2 66 0.0023 30.6 3.4 31 276-306 163-193 (339)
81 2kuc_A Putative disulphide-iso 20.1 96 0.0033 23.2 3.8 36 103-139 84-119 (130)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=5e-59 Score=458.24 Aligned_cols=242 Identities=46% Similarity=0.818 Sum_probs=232.9
Q ss_pred cccccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 020562 80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159 (324)
Q Consensus 80 ~~~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~ 159 (324)
+.++|||++++||++|+|+++.....+|+|||||+||+++++...+.+++|+++++|+.|+++|.||+++.++|+||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~ 84 (400)
T 2bfd_A 5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS 84 (400)
T ss_dssp -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999988889999999999999998866789999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCc
Q 020562 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239 (324)
Q Consensus 160 fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~l 239 (324)
||+++.||||++||++++|+++|+|+++||+|+++++||+++.++|.+++|+.+|+++|+++++|++.++.++++.+++|
T Consensus 85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l 164 (400)
T 2bfd_A 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164 (400)
T ss_dssp CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHH
Q 020562 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFF 319 (324)
Q Consensus 240 Gtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~ 319 (324)
|.++|+|+|+|+|.|+++++.+|+|++|||++++|.|||+||+|+.|++||||||+||+|+|++|+..++...+++.++.
T Consensus 165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred hh
Q 020562 320 KF 321 (324)
Q Consensus 320 ~~ 321 (324)
++
T Consensus 245 a~ 246 (400)
T 2bfd_A 245 GY 246 (400)
T ss_dssp GG
T ss_pred Hc
Confidence 64
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=3.1e-52 Score=411.26 Aligned_cols=216 Identities=37% Similarity=0.533 Sum_probs=206.9
Q ss_pred CCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCCCCeE
Q 020562 105 RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184 (324)
Q Consensus 105 ~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~~D~v 184 (324)
.+|+|||||++|+++++ ..+.+++|+++++|+.|+++|.||+++.++|+|||++||+++.||||++||++++|+++|+|
T Consensus 50 ~~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v 128 (407)
T 1qs0_A 50 SYSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred CCCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEE
Confidence 36899999999999875 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEE
Q 020562 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (324)
Q Consensus 185 ~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~ 264 (324)
+++||+|+..|++|+++.++|++++|+.+|.++|+++++||++++.++++.++++|.++|+|+|+|+|.|+++.+.++||
T Consensus 129 ~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~ 208 (407)
T 1qs0_A 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccc-cCccHHHHHHhh
Q 020562 265 YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQF-RSTAITSFFFKF 321 (324)
Q Consensus 265 ~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~-~~~~Ia~k~~~~ 321 (324)
++|||++++|+|||+||+|+.|++||||||+||+|+|+++...++ ...+++.++.+|
T Consensus 209 i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~ 266 (407)
T 1qs0_A 209 WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGC 266 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHT
T ss_pred EECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999999887 577888887765
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=1.8e-49 Score=386.59 Aligned_cols=209 Identities=36% Similarity=0.594 Sum_probs=197.1
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCCCCe
Q 020562 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDF 183 (324)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~~D~ 183 (324)
..+|+|||||++|+++++...+.+++|+++++|+.|+++|.||+++.+++||||||||+++.||||++||++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 56799999999999998766788999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEE
Q 020562 184 ILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263 (324)
Q Consensus 184 v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv 263 (324)
++++||+|++++++|.++.++|++++|+.+ |++|+ ++.++.+.++++|.++|+|+|+|+|.|+++.+.+||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~~~h-----~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GGCCC-----TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CCCCC-----cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999874 56664 467899999999999999999999999999999999
Q ss_pred EEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 264 ~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|++|||++++|.|||+||+|+.|++||||||+||+|+|++|+..++...+++.++.+|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~ 226 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAA 226 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGT
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHC
Confidence 9999999999999999999999999999999999999999999988877787776654
No 4
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=2.2e-48 Score=379.03 Aligned_cols=193 Identities=25% Similarity=0.415 Sum_probs=183.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCC
Q 020562 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (324)
Q Consensus 122 ~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~ 200 (324)
...+.+++|+++++||.|+++|.||+++.++||||+| +||+++.||||++||++++|+++|+|+++||+|+++++||++
T Consensus 26 ~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~ 105 (365)
T 2ozl_A 26 PVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLS 105 (365)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCC
Confidence 3446799999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHH
Q 020562 201 LQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL 280 (324)
Q Consensus 201 l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEAL 280 (324)
+.++|+|++|+.+|+++|+++++|+.+ .++++.++++|.|+|+|+|+|+|.|+++.+.++||++|||++++|+|||+|
T Consensus 106 ~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Eal 183 (365)
T 2ozl_A 106 VREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 183 (365)
T ss_dssp HHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHH
Confidence 999999999999999999888899854 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEecCCccccccccccccCccHHH
Q 020562 281 NFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITS 316 (324)
Q Consensus 281 NfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~ 316 (324)
|+|+.|++||||||+||+|+|+||...+++..+++.
T Consensus 184 n~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ 219 (365)
T 2ozl_A 184 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK 219 (365)
T ss_dssp HHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG
T ss_pred HHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH
Confidence 999999999999999999999999888877666654
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.2e-47 Score=372.54 Aligned_cols=217 Identities=38% Similarity=0.566 Sum_probs=207.3
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCCC-C
Q 020562 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-D 182 (324)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~~-D 182 (324)
..+|+|||||+||+++++ ..+.+++|+++++|+.|+++|.+|.++..+++||++++++++.|||++++|...+|+++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 567999999999999887 56789999999999999999999999999999999999999999999999999999998 9
Q ss_pred eEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEE
Q 020562 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (324)
Q Consensus 183 ~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vv 262 (324)
+++++||++++++.+|+++.++|.+++|+.+|+++|+++++|+++++.++.+.++++|+++|.|+|+|+|.|+++.+.+|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred EEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 263 v~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||++|||++++|++|||||+|+.|++|+||||.||+|+|++|.+.++...+++.++.+|
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~ 228 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAF 228 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGT
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHc
Confidence 99999999999999999999999999999999999999999998888777777776654
No 6
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=8.7e-38 Score=334.40 Aligned_cols=213 Identities=13% Similarity=0.091 Sum_probs=170.7
Q ss_pred CCCceEEeCCCCC-cccCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-
Q 020562 105 RVPCFRVLDDNGE-LIKGS---DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS- 179 (324)
Q Consensus 105 ~~p~~rvld~~G~-~~~~~---~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~- 179 (324)
.++.++|+|++|+ ++.+. ..+.+++|+++++|+.|+++|.||+++..++++|+. ++..||||+++|+..+++
T Consensus 169 g~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~ 245 (933)
T 2jgd_A 169 GAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRH 245 (933)
T ss_dssp EEECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHH
T ss_pred cceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHH
Confidence 3578899999997 44321 146899999999999999999999999999999982 346899999999666554
Q ss_pred -----CCCeEec-CCCchhhHhh--cCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCc----------cccccCCccC
Q 020562 180 -----ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLN----------YITISSPIAT 241 (324)
Q Consensus 180 -----~~D~v~~-~YRe~g~~l~--RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~----------~~~~ss~lGt 241 (324)
.+|+|++ +||+|+..|+ +|.++.++|+|++|+.++.++|++++.|++....+ +.+..|++|+
T Consensus 246 a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~ 325 (933)
T 2jgd_A 246 AGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEI 325 (933)
T ss_dssp HHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTC
T ss_pred HhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCccccc
Confidence 7999996 8999999999 99999999999999998888899999999876543 3577899999
Q ss_pred chhhhhHHHhhhhhcC-----CCCEEEEEeCCCCC-ccchHHHHHHHHHHcCCC---EEEEEecCCccccc-cccccccC
Q 020562 242 QLPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST-NISEQFRS 311 (324)
Q Consensus 242 qlp~AvG~A~A~k~~g-----~~~Vvv~~~GDGat-SeGdfhEALNfAa~~~lP---vIFv~eNNgyAISt-P~~~Q~~~ 311 (324)
++|+|+|+|+|.|+++ .+.++||++|||++ +||.+|||||+|+.|++| +||||+||+|+||| |+.++...
T Consensus 326 ~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~ 405 (933)
T 2jgd_A 326 VSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARST 405 (933)
T ss_dssp HHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC--------------
T ss_pred ccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccc
Confidence 9999999999999884 78899999999997 999999999999999999 99999999999999 99988776
Q ss_pred ccHHHHHHh
Q 020562 312 TAITSFFFK 320 (324)
Q Consensus 312 ~~Ia~k~~~ 320 (324)
+.++.++++
T Consensus 406 ~~~~~~a~a 414 (933)
T 2jgd_A 406 PYCTDIGKM 414 (933)
T ss_dssp -CGGGGGGT
T ss_pred hhHHHHHHH
Confidence 666666554
No 7
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=3.8e-37 Score=327.48 Aligned_cols=212 Identities=15% Similarity=0.138 Sum_probs=173.4
Q ss_pred CCCceEEeCCCCC-ccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhcc-
Q 020562 105 RVPCFRVLDDNGE-LIK----GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL- 178 (324)
Q Consensus 105 ~~p~~rvld~~G~-~~~----~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL- 178 (324)
.++..+|+|++++ ++. ... +.+++|+++++|+.|+++|.||+++..++++|++ .+..||||+++|+..+|
T Consensus 89 g~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~---~g~~G~Ea~~~g~~~~l~ 164 (868)
T 2yic_A 89 GVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVID 164 (868)
T ss_dssp EEECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHH
T ss_pred CcceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHH
Confidence 3567788888886 332 122 6899999999999999999999999999999886 23499999999999775
Q ss_pred -----CCCCeEec-CCCchhhHhh--cCCCHHHHHHHHhhCcCCC-C-CCCCCCcccCCCC------------Ccccccc
Q 020562 179 -----SADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITIS 236 (324)
Q Consensus 179 -----~~~D~v~~-~YRe~g~~l~--RG~~l~~i~~q~~g~~~d~-~-kGr~mp~H~~~~~------------~~~~~~s 236 (324)
+++|++++ +||+|+..|+ +|.++.++|+|++|+.+++ + +|++|+.|++... +++.+.+
T Consensus 165 ~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~ 244 (868)
T 2yic_A 165 QCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANP 244 (868)
T ss_dssp HHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCC
T ss_pred HhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCC
Confidence 48999998 8999999999 9999999999999999876 3 5889999987543 4567788
Q ss_pred CCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCC-CccchHHHHHHHHHHcCCC---EEEEEecCCcccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG-TSEGDFHAALNFAAVMEAP---VVFICRNNGWAIS 302 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGa-tSeGdfhEALNfAa~~~lP---vIFv~eNNgyAIS 302 (324)
|+||+|+|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||||||+|++|++| +||||+||+|+||
T Consensus 245 s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~s 324 (868)
T 2yic_A 245 SHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT 324 (868)
T ss_dssp SSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT
T ss_pred ccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccc
Confidence 999999999999999999865 6789999999999 5999999999999999999 9999999999999
Q ss_pred ccccccccCccHHHHHHh
Q 020562 303 TNISEQFRSTAITSFFFK 320 (324)
Q Consensus 303 tP~~~Q~~~~~Ia~k~~~ 320 (324)
||.+++.....+++++++
T Consensus 325 t~~~~~~s~~~~~~~a~a 342 (868)
T 2yic_A 325 TAPTDSRSSEYCTDVAKM 342 (868)
T ss_dssp BCHHHHCSSSSTTGGGGG
T ss_pred cCccccccccCHHHHHHh
Confidence 997766554445544443
No 8
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.5e-36 Score=329.63 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=172.0
Q ss_pred CCceEEeCCCCC-ccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchHHHHHHHHhcc-
Q 020562 106 VPCFRVLDDNGE-LIK----GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAAL- 178 (324)
Q Consensus 106 ~p~~rvld~~G~-~~~----~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri-~fy~~~~GqEA~~VG~aaAL- 178 (324)
++..+|.|++++ ++. ... +.+++|+++++|+.|+++|.||+++..++++|++ |+ .||||+++|+..+|
T Consensus 335 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~g~~~~l~ 409 (1113)
T 2xt6_A 335 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVID 409 (1113)
T ss_dssp EECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHH
T ss_pred cceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHH
Confidence 466788888886 332 122 6899999999999999999999999999999886 43 99999999997774
Q ss_pred -----CCCCeEec-CCCchhhHhh--cCCCHHHHHHHHhhCcCCC-C-CCCCCCcccCCCC------------Ccccccc
Q 020562 179 -----SADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITIS 236 (324)
Q Consensus 179 -----~~~D~v~~-~YRe~g~~l~--RG~~l~~i~~q~~g~~~d~-~-kGr~mp~H~~~~~------------~~~~~~s 236 (324)
+++|++++ +||+|+..|+ +|.++.++|+|++|+.+++ + +|++|+.|++... +++.+.+
T Consensus 410 ~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~ 489 (1113)
T 2xt6_A 410 QCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANP 489 (1113)
T ss_dssp HHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCC
T ss_pred HhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCC
Confidence 58999998 8999999999 9999999999999999877 3 5889999987543 4567788
Q ss_pred CCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCC-CccchHHHHHHHHHHcCCC---EEEEEecCCcccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG-TSEGDFHAALNFAAVMEAP---VVFICRNNGWAIS 302 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGa-tSeGdfhEALNfAa~~~lP---vIFv~eNNgyAIS 302 (324)
|+||+|+|+|+|+|+|.|+++ .+.+++|++|||+ ++||+||||||+|++|++| +||||+||+|+||
T Consensus 490 s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gis 569 (1113)
T 2xt6_A 490 SHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT 569 (1113)
T ss_dssp SSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT
T ss_pred ccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccc
Confidence 999999999999999999876 6789999999999 5999999999999999999 9999999999999
Q ss_pred ccccccccCccHHHHHHh
Q 020562 303 TNISEQFRSTAITSFFFK 320 (324)
Q Consensus 303 tP~~~Q~~~~~Ia~k~~~ 320 (324)
||.+++.....+++++++
T Consensus 570 t~~~~~~s~~~~~~~a~a 587 (1113)
T 2xt6_A 570 TAPTDSRSSEYCTDVAKM 587 (1113)
T ss_dssp BCHHHHCSSSSTTGGGGG
T ss_pred cCccccccccCHHHHHHh
Confidence 997766554445555544
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.91 E-value=8.1e-25 Score=224.63 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=129.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEe--cCCCchhhHhhc
Q 020562 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL--PQYREPGVLLWR 197 (324)
Q Consensus 121 ~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~--~~YRe~g~~l~R 197 (324)
|.+.+.++.++|.++|+.| |.++..+.. ++ .|++.++.|+|++.++...+++ ++|+++ ..||++++.+++
T Consensus 17 p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~ 89 (621)
T 2o1s_A 17 TQELRLLPKESLPKLCDEL---RRYLLDSVS--RS--SGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILT 89 (621)
T ss_dssp HHHHTTSCGGGHHHHHHHH---HHHHHHHSC--GG--GCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTT
T ss_pred hHHhhhCCHHHHHHHHHHH---HHHHHHHHh--hc--CCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHh
Confidence 4455689999999999999 766666552 32 3788899999999999999999 899999 789999999999
Q ss_pred CCCHHHHHHHHhhCcCCCCCCCCCCcccCC--CCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch
Q 020562 198 GYTLQQFANQVFANKADDGKGRQMPIHYGS--KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (324)
Q Consensus 198 G~~l~~i~~q~~g~~~d~~kGr~mp~H~~~--~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd 275 (324)
|. .+++ .. +... .| .+.|... ..++++ .++++|+++|.|+|+|+|.|+++.++.|||++|||++++|.
T Consensus 90 G~-~~~~-~~-~r~~----~g--~~g~~~~~~s~~~~~-~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~ 159 (621)
T 2o1s_A 90 GR-RDKI-GT-IRQK----GG--LHPFPWRGESEYDVL-SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGM 159 (621)
T ss_dssp TT-GGGG-GG-TTST----TS--CCSSCCTTTCTTCCS-CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHH
T ss_pred CC-Hhhh-hc-cccc----CC--CCCCCCCCCCCCCcc-CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 97 2222 10 1111 12 1223221 123444 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQF 309 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~ 309 (324)
+|||||+|+.+++|+||||+||+|+|++++..|.
T Consensus 160 ~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~ 193 (621)
T 2o1s_A 160 AFEAMNHAGDIRPDMLVILNDNEMSISENVGALN 193 (621)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECC-----------
T ss_pred HHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHH
Confidence 9999999999999999999999999999987654
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.88 E-value=1.2e-23 Score=216.43 Aligned_cols=170 Identities=19% Similarity=0.143 Sum_probs=131.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC-CCCeEecCCCchh---hHhhc
Q 020562 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLWR 197 (324)
Q Consensus 122 ~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~-~~D~v~~~YRe~g---~~l~R 197 (324)
.+.+.++.++|.++|+.| |.+...+.. + ..|+++++.|+-.+.++....++ ++|+++.+ |+|+ +.+++
T Consensus 20 ~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~ 91 (629)
T 2o1x_A 20 KDLKRLSREQLPALTEEL---RGEIVRVCS--R--GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILT 91 (629)
T ss_dssp HHHTTSCGGGHHHHHHHH---HHHHHHHHT--T--SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHH---HHHHHHHHH--h--cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHh
Confidence 445678999999999999 665555443 2 34688888888444444434448 89999999 9997 56778
Q ss_pred CC-CHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchH
Q 020562 198 GY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (324)
Q Consensus 198 G~-~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdf 276 (324)
|. +.-..++|+.|. +|+.+++. ..++...++++|+++|.|+|+|+|.|+++.++.|||++|||++++|.+
T Consensus 92 G~~~~~~~~r~~~g~-~G~p~~~~--------s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~ 162 (629)
T 2o1x_A 92 GRRDQMADIKKEGGI-SGFTKVSE--------SEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMA 162 (629)
T ss_dssp TTGGGGGGTTSTTSC-CSSCCGGG--------CTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHH
T ss_pred CcHhHHhCcccCCCC-CCCCCCCC--------CCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHH
Confidence 86 333334444442 23333322 224566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 020562 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQ 308 (324)
Q Consensus 277 hEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q 308 (324)
|||||+|+.+++|+||||+||+|+|++++..|
T Consensus 163 ~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~ 194 (629)
T 2o1x_A 163 LAALNTIGDMGRKMLIVLNDNEMSISENVGAM 194 (629)
T ss_dssp HHHHHHHHHHCCSEEEEEEECSBSSSBCCSSH
T ss_pred HHHHHHHHhhCCCEEEEEECCCCCCCCChhHH
Confidence 99999999999999999999999999998754
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.82 E-value=5.4e-20 Score=192.25 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcC--CCHHH
Q 020562 141 TLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRG--YTLQQ 203 (324)
Q Consensus 141 ~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG--~~l~~ 203 (324)
.+|.+-..+......|++|..+++. |.+.+.....|+ +.|.++.+ .+|+. +...| ++.++
T Consensus 29 ~iR~~~~~~v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~ 105 (700)
T 3rim_A 29 TIRVLAADAVQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLS-AGHSSLTLYIQLYLGGFGLELSD 105 (700)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-STTCHHHHHHHHHHTTSSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEC-CCchhHHHHHHHHHhCCCCCHHH
Confidence 5666555566655679998877775 666665555775 36877766 35553 34466 56776
Q ss_pred HHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhc-------------CCCCEEEEEeCCC
Q 020562 204 FANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKME-------------KKDACAVAYTGDG 269 (324)
Q Consensus 204 i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~-------------g~~~Vvv~~~GDG 269 (324)
+.. |.+. |...|.|... ...++...++++|+++++|+|+|+|.|++ +.+++|+|++|||
T Consensus 106 l~~--fr~~-----gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 106 IES--LRTW-----GSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp HTT--TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred HHH--hhcC-----CCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 543 4332 4445777643 45688889999999999999999999985 5688999999999
Q ss_pred CCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 270 GTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 270 atSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+++||.+|||+|+|+.|+|| +|+||+||+|+|++|++.++ .++++.+|.+|
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~ 230 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAY 230 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHH
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHc
Confidence 99999999999999999997 99999999999999999876 78899999876
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.78 E-value=1e-18 Score=181.55 Aligned_cols=172 Identities=18% Similarity=0.250 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccCC---------CCeEecCCCchhh------HhhcCC--CH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA---------DDFILPQYREPGV------LLWRGY--TL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~~---------~D~v~~~YRe~g~------~l~RG~--~l 201 (324)
...+|.+-..+......|++|..+++. |.+.+.....|+- .|.++.+ .+|+. +...|+ +.
T Consensus 10 a~~iR~~~~~~v~~a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~ 86 (673)
T 1r9j_A 10 ANCIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMS-NGHGCALQYALLHMAGYNLTM 86 (673)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEc-cccHHHHHHHHHHHcCCCCCH
Confidence 445566555566666799998888776 7776666555642 3776655 36664 334565 46
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccCCC-CCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCC
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG 270 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~~~-~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGa 270 (324)
+++.. |.+. |...|.|.... ..++...++++|+++|.|+|+|+|.|+.+ .++.|+|++|||+
T Consensus 87 ~~l~~--~r~~-----~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~ 159 (673)
T 1r9j_A 87 DDLKG--FRQD-----GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGC 159 (673)
T ss_dssp HHHHT--TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHHHh--hccC-----CCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcch
Confidence 66543 4333 44456676433 46888899999999999999999999765 5889999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 271 tSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
++||.+|||+|+|+.++|| +||||+||+|+|++++..++ .++++.+|.++
T Consensus 160 ~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~ 210 (673)
T 1r9j_A 160 LMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAM 210 (673)
T ss_dssp HHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHT
T ss_pred hcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHC
Confidence 9999999999999999998 99999999999999999988 78899999875
No 13
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.77 E-value=3.9e-18 Score=175.62 Aligned_cols=187 Identities=17% Similarity=0.140 Sum_probs=142.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh--
Q 020562 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV-- 193 (324)
Q Consensus 125 ~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~-- 193 (324)
..++++.+.+|-+....+|.+-..+......|+++.-+++. |.+.+.....|+ +.|.++.+ -+|+.
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~--e~~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~ 79 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAA--EIMAVLFFHTMRYKSQDPRNPHNDRFVLS-KGHAAPI 79 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTH--HHHHHHHHTTCBCCTTCTTCTTSCEEEES-SGGGHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHH--HHHHHHHHHhhccCCCCCCCCCCCeEEEc-CccHHHH
Confidence 45677777777777778888777777766678998777765 666555444552 26887776 46664
Q ss_pred ----HhhcCC-CHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCC-CCEEEEEeC
Q 020562 194 ----LLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTG 267 (324)
Q Consensus 194 ----~l~RG~-~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~-~~Vvv~~~G 267 (324)
+...|+ +.+++.. |.+ .|...+.|......++...++++|+++|.|+|+|+|.|+.++ ++.|+|++|
T Consensus 80 ly~~~~l~G~~~~~~l~~--~r~-----~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~G 152 (616)
T 3mos_A 80 LYAVWAEAGFLAEAELLN--LRK-----ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLG 152 (616)
T ss_dssp HHHHHHHTTSSCGGGGGG--TTC-----TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHH--hcc-----CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 334564 4444322 222 244566676555566667889999999999999999997665 589999999
Q ss_pred CCCCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 268 DGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 268 DGatSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||+.+||.+|||||+|+.++|| +|+|++||+|+|++++..++..++++.+|.+|
T Consensus 153 DG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~ 207 (616)
T 3mos_A 153 DGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAF 207 (616)
T ss_dssp TGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHT
T ss_pred ccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHc
Confidence 9999999999999999999998 88999999999999999888778888888775
No 14
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.76 E-value=2.4e-18 Score=178.97 Aligned_cols=172 Identities=18% Similarity=0.248 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHh-ccCC-------CCeEecCCCchhh------HhhcCC--CHH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA-ALSA-------DDFILPQYREPGV------LLWRGY--TLQ 202 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aa-AL~~-------~D~v~~~YRe~g~------~l~RG~--~l~ 202 (324)
...+|.+-..+......|++|..++.. |.+.+.... -.++ .|.++.+ -+|+. +...|+ +.+
T Consensus 12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~~ 88 (680)
T 1gpu_A 12 VSTIRILAVDTVSKANSGHPGAPLGMA--PAAHVLWSQMRMNPTNPDWINRDRFVLS-NGHAVALLYSMLHLTGYDLSIE 88 (680)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHhCCCCccCCCCCCCCEEEEe-cchHHHHHHHHHHHhCCCCCHH
Confidence 455666655566655788887666554 555444433 2333 5877666 36664 334554 566
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCCCc
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTS 272 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGatS 272 (324)
++.. |.+. |...|.|......++...++++|+++|.|+|+|+|.|+++ .++.|+|++|||+++
T Consensus 89 ~l~~--~r~~-----g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~ 161 (680)
T 1gpu_A 89 DLKQ--FRQL-----GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQ 161 (680)
T ss_dssp HHTT--TTCT-----TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HHHh--hccc-----CCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccc
Confidence 5442 3332 4445778766678999999999999999999999999765 478999999999999
Q ss_pred cchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 273 EGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 273 eGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||.+|||||+|+.++|| +||||+||+|+|++++..++ .++++.+|.+|
T Consensus 162 eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (680)
T 1gpu_A 162 EGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAY 210 (680)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhc
Confidence 99999999999999998 99999999999999999876 57788888775
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.75 E-value=6.4e-18 Score=175.60 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh--
Q 020562 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV-- 193 (324)
Q Consensus 125 ~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~-- 193 (324)
..++.++|.++ ...+|.+-..+......|+++..++.. |.+.+.....|+ +.|.++.+ -+|+.
T Consensus 9 ~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~~ 82 (675)
T 1itz_A 9 KAATGELLEKS---VNTIRFLAIDAVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLS-AGHGCML 82 (675)
T ss_dssp -CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHH
T ss_pred CCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCccHhHH--HHHHHHHHHHhcCCcCCCCCCCCCeEEEc-CcchHHH
Confidence 46888888754 455666655566666688888776654 555444433343 34776655 36664
Q ss_pred ----HhhcCC---CHHHHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcC--------
Q 020562 194 ----LLWRGY---TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK-------- 257 (324)
Q Consensus 194 ----~l~RG~---~l~~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g-------- 257 (324)
+...|+ +.+++.. |.+. |...|.|... ...++...++++|+++|.|+|+|+|.|+++
T Consensus 83 lYa~l~l~G~~~~~~~~l~~--~r~~-----~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 83 QYALLHLAGYDSVKEEDLKQ--FRQW-----GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHTCTTCCHHHHTT--TTST-----TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHcCCCCCCHHHHHh--cccC-----CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 334554 4455432 3332 3334566543 245888899999999999999999999876
Q ss_pred --CCCEEEEEeCCCCCccchHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 258 --KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 258 --~~~Vvv~~~GDGatSeGdfhEALNfAa~~~l-PvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
.++.|+|++|||+++||.+|||||+|+.++| |+|+||+||+|+|+.++..+. .++++.+|.+|
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~ 221 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEAL 221 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHT
T ss_pred CCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhC
Confidence 6889999999999999999999999999999 699999999999999999876 77898888775
No 16
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.73 E-value=7e-18 Score=175.31 Aligned_cols=171 Identities=19% Similarity=0.233 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcC--CCHH
Q 020562 140 VTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRG--YTLQ 202 (324)
Q Consensus 140 v~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG--~~l~ 202 (324)
..+|.+-..+......|+++..++.. |.+.+....-|+ +.|.++.+ -+|+. +...| ++.+
T Consensus 11 ~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~~ 87 (663)
T 3kom_A 11 NAIRFLSIDATLKAKSGHPGMPMGMA--DIATVLWTKFLKHNPNNPHWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIE 87 (663)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEEC-SSSCHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHhcCCCCCCccHHHH--HHHHHHHhhheeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCHH
Confidence 34555555555555678887666554 555444433453 46877766 35554 33456 4566
Q ss_pred HHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEeCCCCC
Q 020562 203 QFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGT 271 (324)
Q Consensus 203 ~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~GDGat 271 (324)
++.. |.+. |...|.|... ...++...++++|+++|.|+|+|+|.|+++. ++.|+|++|||++
T Consensus 88 ~l~~--~r~~-----~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l 160 (663)
T 3kom_A 88 DIKN--FRQL-----HSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCL 160 (663)
T ss_dssp HHTT--TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHH
T ss_pred HHHh--hccC-----CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhh
Confidence 6542 3333 3333556532 3557888999999999999999999997764 7899999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 272 SeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
+||.+|||||+|+.++|| +|+||+||+|+|++++..++ .++++.+|.+|
T Consensus 161 ~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (663)
T 3kom_A 161 MEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAY 210 (663)
T ss_dssp HSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHT
T ss_pred hhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHC
Confidence 999999999999999998 99999999999999999876 56789988875
No 17
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.73 E-value=9.8e-18 Score=173.45 Aligned_cols=172 Identities=16% Similarity=0.219 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcCC--CH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRGY--TL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG~--~l 201 (324)
...+|.+-..+......|++|..++.. |.+.+.....|+ +.|.++.+ -+|+. +...|+ +.
T Consensus 12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 12 VNAIRFLAIDAVEKARSGHPGMPMGMA--PLAYLLFREVMRHNPLDPDWPDRDRFVLS-AGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCccCcchhHH--HHHHHHHHHHhcCCccCCCCCCCCeEEEe-CcchhHHHHHHHHHhCCCCCH
Confidence 345565555556655688887666553 444443333343 23777655 35664 334554 55
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCC
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG 270 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGa 270 (324)
+++.. |.+. |...+.|... ...++...++++|+++|.|+|+|+|.|+++ .++.|+|++|||+
T Consensus 89 ~~l~~--~r~~-----~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~ 161 (651)
T 2e6k_A 89 EELKS--FRQW-----GSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGD 161 (651)
T ss_dssp HHHTT--TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHHHH--hhcc-----CCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhh
Confidence 55432 3332 2222445532 246888899999999999999999999765 6889999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 271 tSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
++||.+|||||+|+.++|| +||||+||+|+|++++..++ .++++.+|.+|
T Consensus 162 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~ 212 (651)
T 2e6k_A 162 LMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAY 212 (651)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHT
T ss_pred hchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhC
Confidence 9999999999999999998 99999999999999999887 67788888775
No 18
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.72 E-value=1.7e-17 Score=172.08 Aligned_cols=172 Identities=18% Similarity=0.247 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhcc--CC-------CCeEecCCCchhh------HhhcC--CCH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL--SA-------DDFILPQYREPGV------LLWRG--YTL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL--~~-------~D~v~~~YRe~g~------~l~RG--~~l 201 (324)
...+|.+-..+......|+++..++.. |.+.+.....| +| .|.++.+ -+|+. +...| ++.
T Consensus 8 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~ 84 (669)
T 2r8o_A 8 ANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLKHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPM 84 (669)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHHhhcCCcCCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCH
Confidence 445566555566655688888766554 55544443434 33 4776665 36664 33445 456
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcC----------CCCEEEEEeCCCC
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG 270 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g----------~~~Vvv~~~GDGa 270 (324)
+++.. |.+. |...|.|... ...++...++++|+++|.|+|+|+|.++++ .++.|+|++|||+
T Consensus 85 ~~l~~--~r~~-----~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~ 157 (669)
T 2r8o_A 85 EELKN--FRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (669)
T ss_dssp HHHTT--TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHHHH--hhcC-----CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhH
Confidence 65533 3333 2233557643 346889999999999999999999999765 4789999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 271 tSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
++||.+|||||+|+.++|| +||||+||+|+|++++..++ .++++.+|.+|
T Consensus 158 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~ 208 (669)
T 2r8o_A 158 MMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 208 (669)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred hcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHC
Confidence 9999999999999999998 99999999999999998776 56788888775
No 19
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.71 E-value=2.6e-17 Score=172.32 Aligned_cols=172 Identities=19% Similarity=0.236 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcC--CCH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRG--YTL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG--~~l 201 (324)
...+|.+-..+......|+++..+++. |.+.+....-|+ +.|.++.+ .+|+. +...| ++.
T Consensus 49 a~~iR~~~i~~v~~a~~GH~g~~l~~a--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~ 125 (711)
T 3uk1_A 49 ANAIRALAMDAVQQANSGHPGMPMGMA--EIGVALWSRHLKHNPTNPHWADRDRFVLS-NGHGSMLLYSLLHLTGYDLPI 125 (711)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHHTCCCCTTCTTCTTCCEEEEC-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHhcCCCccCchHHHH--HHHHHHHhhhEeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCH
Confidence 344565555555555688998777765 666555444453 36888766 46665 33456 456
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEeCCCC
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGG 270 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~GDGa 270 (324)
+++.. |.+. |...|.|... ...++...++++|+++|.|+|+|+|.|+++. ++.|+|++|||+
T Consensus 126 ~~l~~--~r~~-----~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~ 198 (711)
T 3uk1_A 126 EELKN--FRQL-----HSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGC 198 (711)
T ss_dssp HHHHT--TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHHHh--hccc-----cCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcc
Confidence 66542 4443 2223556532 3467888999999999999999999997764 789999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 271 tSeGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
..||.+|||||+|+.++|| +|+||+||+|+|+.++..++ .++++.+|.+|
T Consensus 199 l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 249 (711)
T 3uk1_A 199 LMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAY 249 (711)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred hhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHc
Confidence 9999999999999999998 99999999999999999885 56788888875
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.71 E-value=2.2e-17 Score=170.86 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcC--CCH
Q 020562 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRG--YTL 201 (324)
Q Consensus 139 Mv~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG--~~l 201 (324)
...+|.+-..+......|+++..++.. |.+.+. ...|+ +.|.++.+ -+|+. +...| ++.
T Consensus 10 a~~iR~~~i~~v~~a~~GH~g~~lg~~--ei~~~L-~~~~~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~ 85 (632)
T 3l84_A 10 ANTLRFLSADMVQKANSGHPGAPLGLA--DILSVL-SYHLKHNPKNPTWLNRDRLVFS-GGHASALLYSFLHLSGYDLSL 85 (632)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHH-TTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcChhHH--HHHHHH-HHHhCcCCCCCCCCCCCEEEEc-CCcccHHHHHHHHHhCCCCCH
Confidence 455666665666555678887666554 555444 55664 46888776 35553 33456 456
Q ss_pred HHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCC-------CCEEEEEeCCCCCccc
Q 020562 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-------DACAVAYTGDGGTSEG 274 (324)
Q Consensus 202 ~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~-------~~Vvv~~~GDGatSeG 274 (324)
+++.. |.+. |...|.|......++...++++|+++|.|+|+|+|.|+++. ++.|+|++|||+..||
T Consensus 86 ~~l~~--~r~~-----~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG 158 (632)
T 3l84_A 86 EDLKN--FRQL-----HSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEG 158 (632)
T ss_dssp HHHTT--TTCT-----TCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSH
T ss_pred HHHHH--HhcC-----CCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhc
Confidence 66542 3333 22235565445678888999999999999999999998764 8899999999999999
Q ss_pred hHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 275 DFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 275 dfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
.+|||||+|+.++|| +|+|++||+|+|+.++..++ .++++.+|.+|
T Consensus 159 ~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~ 205 (632)
T 3l84_A 159 ISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQ 205 (632)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHc
Confidence 999999999999998 99999999999999998775 56788888875
No 21
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.69 E-value=7.1e-17 Score=168.49 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCCchHHHHHHHHhccC---------CCCeEecCCCchhh------HhhcC--CCHHH
Q 020562 141 TLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPGV------LLWRG--YTLQQ 203 (324)
Q Consensus 141 ~~R~~D~~~~~lqRqGri~fy~~~~GqEA~~VG~aaAL~---------~~D~v~~~YRe~g~------~l~RG--~~l~~ 203 (324)
.+|.+-..+......|+++.-+++. |.+.+.....|+ +.|.++.+ .+|+. +...| ++.++
T Consensus 36 ~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~~~ 112 (690)
T 3m49_A 36 TIRTLSIDAIEKANSGHPGMPMGAA--PMAYTLWTQFMKHNPNNPTWFNRDRFVLS-AGHGSMLLYSLLHLSGYDVTMDD 112 (690)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTSSCCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcchHHH--HHHHHHHHHHhcCCCCCCCCCCCCeEEEC-CccHHHHHHHHHHHHCCCCCHHH
Confidence 4555555555555678887666654 666555545665 56877766 36664 33456 56776
Q ss_pred HHHHHhhCcCCCCCCCCCCcccCC-CCCccccccCCccCchhhhhHHHhhhhhcCC----------CCEEEEEeCCCCCc
Q 020562 204 FANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGTS 272 (324)
Q Consensus 204 i~~q~~g~~~d~~kGr~mp~H~~~-~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~----------~~Vvv~~~GDGatS 272 (324)
+.. |.+. |...|.|... ...++...++++|+++|.|+|+|+|.|+++. ++.|+|++|||+..
T Consensus 113 l~~--~rq~-----gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~ 185 (690)
T 3m49_A 113 LKN--FRQW-----GSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLM 185 (690)
T ss_dssp HTT--TTCT-----TCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHH
T ss_pred HHh--hccC-----CCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhh
Confidence 542 3332 3334566643 3567888899999999999999999997653 88999999999999
Q ss_pred cchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 273 EGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 273 eGdfhEALNfAa~~~lP-vIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
||.+|||||+|+.++|| +|+|++||+|+|+.++.... .++++.+|.+|
T Consensus 186 eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 234 (690)
T 3m49_A 186 EGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAY 234 (690)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHH
T ss_pred hccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHc
Confidence 99999999999999997 99999999999999998764 56788888875
No 22
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.68 E-value=1.2e-16 Score=170.70 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=120.5
Q ss_pred cCCcccccCCCchHHHHHHHHhccC------CCCeEecCCCchhh------HhhcCC-CHHHHHHHHhhCcCCCCCCCCC
Q 020562 155 QGRFSFYLTTIGEEAINIGSAAALS------ADDFILPQYREPGV------LLWRGY-TLQQFANQVFANKADDGKGRQM 221 (324)
Q Consensus 155 qGri~fy~~~~GqEA~~VG~aaAL~------~~D~v~~~YRe~g~------~l~RG~-~l~~i~~q~~g~~~d~~kGr~m 221 (324)
.|+++.+++.. |...++....|+ ++|+|+.. +|+. ++..|. +.+++ .. |-+..+ +..+
T Consensus 104 gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~--GH~sp~~Ya~~~l~Gr~~~e~l-~~-fRq~~~---~~gl 174 (886)
T 2qtc_A 104 GGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQ--GHISPGVYARAFLEGRLTQEQL-DN-FRQEVH---GNGL 174 (886)
T ss_dssp CCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECC--GGGHHHHHHHHHHTTSSCHHHH-TT-BTCCTT---SSCB
T ss_pred ccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEc--chhHHHHHHHHHHhCCCCHHHH-Hh-ccCCCC---CCCC
Confidence 68998888776 888777767777 57877776 6665 566785 34443 32 333211 2344
Q ss_pred CcccCCC-CC-ccccccCCccCchhhhhHHHhhhhh-------cCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCC-EE
Q 020562 222 PIHYGSK-KL-NYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VV 291 (324)
Q Consensus 222 p~H~~~~-~~-~~~~~ss~lGtqlp~AvG~A~A~k~-------~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lP-vI 291 (324)
|.|.... .. ++...++++|++++.|+|+|+|.|+ ++.++.|+|++|||+++||.+|||||+|+.++|+ +|
T Consensus 175 ~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli 254 (886)
T 2qtc_A 175 SSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLV 254 (886)
T ss_dssp CSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEE
T ss_pred CCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEE
Confidence 5554322 12 3677899999999999999999998 7889999999999999999999999999999996 99
Q ss_pred EEEecCCccccccccccc-cCccHHHHHHhh
Q 020562 292 FICRNNGWAISTNISEQF-RSTAITSFFFKF 321 (324)
Q Consensus 292 Fv~eNNgyAIStP~~~Q~-~~~~Ia~k~~~~ 321 (324)
|||+||+|+|+.|+.... ..+.++.+|..+
T Consensus 255 ~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~ 285 (886)
T 2qtc_A 255 FVINCNLQRLDGPVTGNGKIINELEGIFEGA 285 (886)
T ss_dssp EEEEECSBCSSSBSCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCcccCCCccccccccHHHHHHHHhC
Confidence 999999999999998753 345677777653
No 23
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=98.97 E-value=3.1e-10 Score=120.74 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=87.2
Q ss_pred CCcccCCCCCccccccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccch---HHHHHHHHHHcCC-CEEEEEec
Q 020562 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAAVMEA-PVVFICRN 296 (324)
Q Consensus 221 mp~H~~~~~~~~~~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGd---fhEALNfAa~~~l-PvIFv~eN 296 (324)
.|.|....-+++...+++||..+++|+|+|+ ++.+..|+|++|||...||. .||+.+||+.+++ .||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 7889865668999999999999999999995 46688999999999999999 9999999999999 59999999
Q ss_pred CCcccccccccc-ccCccHHHHHHhh
Q 020562 297 NGWAISTNISEQ-FRSTAITSFFFKF 321 (324)
Q Consensus 297 NgyAIStP~~~Q-~~~~~Ia~k~~~~ 321 (324)
|++.|+.|+... ...+++..||.+|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~ 260 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGM 260 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHT
T ss_pred CCCcCCCCccccccCcHHHHHHHHHC
Confidence 999999999843 4578899999886
No 24
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=98.79 E-value=1.9e-09 Score=109.76 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=60.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc---------c-
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS---------T- 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS---------t- 303 (324)
..+++|.++|.|+|++++.+ ++.|||++|||++.++ +++|+.|+.+++|+++||.||+ |+|- .
T Consensus 418 ~~g~~G~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNYP----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhCC----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 45788988888888887753 6789999999999997 6679999999999888887775 9972 2
Q ss_pred cccccccCccHHHHHHhh
Q 020562 304 NISEQFRSTAITSFFFKF 321 (324)
Q Consensus 304 P~~~Q~~~~~Ia~k~~~~ 321 (324)
+...+....+++..+.+|
T Consensus 492 ~~~~~~~~~d~~~~a~a~ 509 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGV 509 (603)
T ss_dssp CCSSBCCCCCHHHHHHHT
T ss_pred cccCcCCCCCHHHHHHHC
Confidence 222233345566666543
No 25
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.68 E-value=3.4e-09 Score=106.57 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=59.8
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN 304 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP 304 (324)
...+++|.++|.|+|+|+|.+.+++++.|+|++|||+...+ +++|+.|+.+++|+++||.|| +|+|...
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~ 479 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKL 479 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhh
Confidence 35689999999999999999988888999999999999885 677999999999977777555 6998653
No 26
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.56 E-value=1.7e-08 Score=100.80 Aligned_cols=63 Identities=27% Similarity=0.379 Sum_probs=55.5
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI 305 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP~ 305 (324)
+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++|+.|+.+++|+++||.|| +|+|....
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 899999999999999864 4679999999999988 899999999999988888666 59997664
No 27
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.50 E-value=5e-08 Score=99.13 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=55.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI 305 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP~ 305 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++||-|| +|+|....
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~ 476 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNK 476 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGT
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHH
Confidence 46899999999999999853 6679999999999887 699999999999977777555 89998654
No 28
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.47 E-value=4.5e-08 Score=98.56 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=56.1
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEe-cCCcccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTN 304 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~e-NNgyAIStP 304 (324)
..+++|.++|.|+|+|+|.| +.++.|+|++|||+...+ .++|+.|+.+++|+++||- ||+|+|...
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 483 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLH 483 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 35899999999999999986 557789999999999986 5689999999999766665 557999765
No 29
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.43 E-value=7e-08 Score=97.44 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=54.3
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN 304 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP 304 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++||-|| +|+|...
T Consensus 418 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 482 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAI 482 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence 45899999999999999864 6789999999999885 467999999999977777666 6998764
No 30
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.42 E-value=7.3e-08 Score=97.37 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=54.1
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN 304 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP 304 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++||-|| +|+|...
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~ 498 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL 498 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHH
Confidence 45899999999999999864 5679999999999886 679999999999976666555 6999875
No 31
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.40 E-value=6.8e-08 Score=98.38 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=54.6
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN 304 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP 304 (324)
+..+++|.++|.|+|+|+|.+ ++.|||++|||+...+ .++|+.|+.+++|+++||-|| +|+|...
T Consensus 439 g~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~ 504 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQ 504 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 346899999999999999863 6789999999999886 679999999999976666555 6998643
No 32
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.38 E-value=8.6e-08 Score=97.24 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=54.7
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI 305 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAIStP~ 305 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++||-|| +|+|....
T Consensus 422 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~ 487 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTL 487 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHH
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHH
Confidence 35899999999999999863 5679999999999886 599999999999976666555 69987653
No 33
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.35 E-value=1.2e-07 Score=95.63 Aligned_cols=65 Identities=17% Similarity=0.321 Sum_probs=53.8
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTN 304 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAIStP 304 (324)
...+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++|| +||+|+|...
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~ 487 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVERE 487 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHH
Confidence 356899999999999999853 6789999999999884 566999999999966655 5558998653
No 34
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.35 E-value=1.3e-07 Score=95.32 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=54.2
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCcccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS 306 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAIStP~~ 306 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++|| +||+|+|.....
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~ 473 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIH 473 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeec
Confidence 46899999999999999853 6789999999999885 466999999999955555 555899986543
No 35
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.34 E-value=2.2e-07 Score=93.67 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=54.2
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCcccccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS 306 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAIStP~~ 306 (324)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|..+++|+++|| +||+|+|.....
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~ 477 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIH 477 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeec
Confidence 46889999999999999853 6789999999999884 556999999999965555 666899986543
No 36
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.30 E-value=1.7e-07 Score=95.03 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=53.2
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAISt 303 (324)
..+++|.++|.|+|+|+|.+ ++.|||++|||+...+ .++|+.|+.+++|+++|| +||+|+|..
T Consensus 424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVM 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHH
Confidence 45899999999999999864 5779999999999886 578999999999966666 555799864
No 37
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.30 E-value=1.3e-07 Score=94.78 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=52.8
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAISt 303 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .++|+.|+.+++|+++||.|| +|+|..
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~ 469 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVER 469 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEE
Confidence 56899999999999999854 5779999999998765 677999999999976666555 699974
No 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.22 E-value=3.1e-07 Score=95.34 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=52.7
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTN 304 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAIStP 304 (324)
+..+++|.++|.|+|+|+|. .++.|||++|||+...+ .++|+.|+.+++|+++|| +||+|+|...
T Consensus 510 g~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~ 575 (677)
T 1t9b_A 510 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQ 575 (677)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHH
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhh
Confidence 34578999999999999985 46789999999999884 455999999999966555 5556998653
No 39
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.18 E-value=3e-07 Score=92.83 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=51.4
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAISt 303 (324)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+.. .-.++|+.|+.+++|+++|| +||+|+|..
T Consensus 420 ~~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLR 483 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHH
T ss_pred ccccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEe
Confidence 35799999999999999863 56799999999988 44688999999999966555 555799854
No 40
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.07 E-value=1.9e-06 Score=86.78 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=51.8
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-c-ccc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AIS 302 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-y-AIS 302 (324)
+..+++|.++|.|+|+|+| .++.|+|++|||+.... .++|+.|+.+++|+++||.||+ | .+.
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 3567899999999999998 35679999999999764 5779999999999888888886 3 553
No 41
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.06 E-value=1.1e-06 Score=89.38 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=50.3
Q ss_pred cCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 020562 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIST 303 (324)
Q Consensus 236 ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAISt 303 (324)
.+.+|.++|.|+|+|+|. ++.|+|++|||+...+ + ++|+.|+.+++|+++|| +||+|+|..
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~ 515 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFS 515 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGG
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccc
Confidence 357799999999999983 5679999999999886 4 55999999999977666 555899854
No 42
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.03 E-value=2.7e-06 Score=85.49 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=50.0
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAIST 303 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~-eNNgyAISt 303 (324)
..+.+|..+|.|+|+++|.+ ++.|||++|||+...+ .++|+.|+.+++|+++|| +||+|++..
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVA 467 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 45788999999999988753 5679999999998765 678999999999965555 555798753
No 43
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.01 E-value=1.7e-06 Score=86.98 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=51.1
Q ss_pred cccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-c-cc
Q 020562 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AI 301 (324)
Q Consensus 234 ~~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-y-AI 301 (324)
+..+++|..+|.|+|+++| .++.|+|++|||+.... .+.|+.|+.+++|+++||-||+ | ++
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~ 480 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRG 480 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCS
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHH
Confidence 4568999999999999998 35679999999999764 4679999999999888888886 3 55
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=97.77 E-value=5.3e-06 Score=83.57 Aligned_cols=60 Identities=28% Similarity=0.242 Sum_probs=45.2
Q ss_pred ccCCccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 020562 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS 302 (324)
Q Consensus 235 ~ss~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNg-yAIS 302 (324)
..++.|. +|.|+|+++| . ++.|+|++|||+.... ..+|+.|..+++|+++||.||+ |+|.
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~ 475 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIF 475 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC----
T ss_pred ccccccH-HHHHHHHHhc-C----CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcc
Confidence 4556676 9999999998 2 5679999999998543 3458999999999888888876 6764
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=97.58 E-value=1.6e-05 Score=80.49 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=40.0
Q ss_pred cCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 020562 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST 303 (324)
Q Consensus 240 Gtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNN-gyAISt 303 (324)
|..+|.|+|+|++ ++.|||++|||+.... .++|+.|..+++|+++||-|| +|+|..
T Consensus 439 ~g~l~~AiGaa~~------~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~ 495 (578)
T 3lq1_A 439 DGVVSSALGASVV------FQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFS 495 (578)
T ss_dssp SSHHHHHHHHTTT------SSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC------
T ss_pred ccHHHHHHHHhcC------CCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCcccc
Confidence 3368889998743 5679999999998643 466999999999988777777 688754
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=76.81 E-value=1.7 Score=48.28 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCEEEEEeCCC-CCccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 020562 259 DACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WA 300 (324)
Q Consensus 259 ~~Vvv~~~GDG-atSeGdfhEALNfAa~~~lPvIFv~eNNg-yA 300 (324)
+.-|||+.||| +..-| ...|--|..+++||++||-||+ |+
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg 994 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYS 994 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBT
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHH
Confidence 36899999999 66666 3467778889999888887776 44
No 47
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=53.39 E-value=26 Score=35.79 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=40.9
Q ss_pred hhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccc
Q 020562 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS 302 (324)
Q Consensus 246 AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIS 302 (324)
++|+|.++.+.|...+.++.|+++.. -.++.+..++..++||++++..-+.++.
T Consensus 367 ~v~~a~G~A~~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G 420 (616)
T 3mos_A 367 MVSIAVGCATRNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIG 420 (616)
T ss_dssp HHHHHHHHHGGGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGC
T ss_pred HHHHHHHHHHcCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCcccc
Confidence 55666666666655677788999873 5688898899999999999887776443
No 48
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=39.65 E-value=38 Score=28.30 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEe
Q 020562 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (324)
Q Consensus 259 ~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~e 295 (324)
..-+++++.||..+.++..+++..+...+++|..|--
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igi 147 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGV 147 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEe
Confidence 4568888999999999899999988888887665543
No 49
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=39.43 E-value=37 Score=26.33 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=27.5
Q ss_pred CCCCCCceEEeCCCCCccc-CCCCCCCCHHHHHHHHHH
Q 020562 102 SEKRVPCFRVLDDNGELIK-GSDFQQVSKEVAVKMYSH 138 (324)
Q Consensus 102 ~~~~~p~~rvld~~G~~~~-~~~~~~ls~e~ll~lYr~ 138 (324)
....+|++-++|.+|+++. ....-..+.++++++.+.
T Consensus 88 ~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 88 NVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp TCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence 3467899999999999973 222335788988887764
No 50
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=37.05 E-value=37 Score=29.18 Aligned_cols=35 Identities=6% Similarity=-0.134 Sum_probs=27.8
Q ss_pred CEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEE
Q 020562 260 ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC 294 (324)
Q Consensus 260 ~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~ 294 (324)
+|++.+.||+..++++..++...+...+..|..|.
T Consensus 108 riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 108 RIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp EEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEE
Confidence 46677778886678999999999999998866653
No 51
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=35.34 E-value=50 Score=33.86 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=36.2
Q ss_pred hhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 246 AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
++|+|.++.+.|.-..++..+.-.+ . -.++++.+++..++||||++-+.+++. ..|++
T Consensus 409 ~~~~a~GlA~~Gg~~P~~~t~~~F~--~-~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH 468 (651)
T 2e6k_A 409 MGAILNGLNLHGGYRAYGGTFLVFS--D-YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH 468 (651)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGG--G-GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHHcCCCEEEEEeHHHHH--H-HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc
Confidence 3444444455552233333332222 1 457889999999999999998888766 35666
No 52
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=35.26 E-value=33 Score=34.87 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=37.8
Q ss_pred hhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc-ccccccc
Q 020562 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQ 308 (324)
Q Consensus 246 AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI-StP~~~Q 308 (324)
++|+|.++.+.|. +.++..+++.. +=-+-..++.++..++||||++.+-++.- ..|++.+
T Consensus 373 ~~~~a~G~A~~G~-rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~ 433 (621)
T 2o1s_A 373 AVTFAAGLAIGGY-KPIVAIYSTFL--QRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG 433 (621)
T ss_dssp HHHHHHHHHHTTC-EEEEEEETTGG--GGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB
T ss_pred HHHHHHHHHHCCC-EEEEEehHhHH--HHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc
Confidence 4444444444554 45555588875 33333457888999999999998877621 3455554
No 53
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=35.13 E-value=64 Score=25.85 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=27.8
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCC-HHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVS-KEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls-~e~ll~lYr~Mv 140 (324)
...+|++-++|.+|+++.... -..+ .++++++.+..+
T Consensus 128 v~~~Pt~~lid~~G~~~~~~~-G~~~~~~~l~~~l~~~l 165 (172)
T 3f9u_A 128 ANAQPFYVLIDNEGNPLNKSY-AYDEDISKYINFLQTGL 165 (172)
T ss_dssp CCCSSEEEEECTTSCBSSCCB-CSCCCHHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEeecc-CCCCCHHHHHHHHHHHH
Confidence 357899999999999987432 3455 888887776653
No 54
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=34.82 E-value=56 Score=33.62 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=39.6
Q ss_pred CccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 238 PIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 238 ~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
.|.-|- ++|+|.++.+.|.-..++..|...+. -..+++..++..++||+|++-..+++. ..|++
T Consensus 408 GIaE~~--~v~~a~GlA~~gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH 473 (669)
T 2r8o_A 408 GVREFG--MTAIANGISLHGGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH 473 (669)
T ss_dssp CSCHHH--HHHHHHHHHHHSSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT
T ss_pred chhHHH--HHHHHHHHHHcCCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc
Confidence 444443 44555555555322333344544332 346778889999999999998887764 45665
No 55
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=34.60 E-value=53 Score=33.88 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=37.4
Q ss_pred hhHHHhhhhhcC-CCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 246 AVGVAYSLKMEK-KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 246 AvG~A~A~k~~g-~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
++|+|.++.+.| .-..++..+...++ -.++++..++..++||||++...+++. ..|++
T Consensus 426 ~v~~a~GlA~~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH 486 (675)
T 1itz_A 426 MGAICNGIALHSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH 486 (675)
T ss_dssp HHHHHHHHHTTCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc
Confidence 444555555566 12334444444332 558889999999999999997776654 45666
No 56
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=30.61 E-value=35 Score=25.37 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~M 139 (324)
...+|++-|+|.+|+++ ......+.+++.+..+.+
T Consensus 99 i~~~P~~~~id~~g~i~--~~~g~~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 99 VTQQPAYAFVDPHGNVD--VVRGRMSQDELTRRVTAL 133 (136)
T ss_dssp CCSSSEEEEECTTCCEE--EEESCCCHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCEE--EEecCCCHHHHHHHHHHH
Confidence 35689999999999986 223356788888777654
No 57
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=29.42 E-value=39 Score=25.29 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=26.2
Q ss_pred CCCCCceEEeCCCCCcccCCCC---CCCCHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDF---QQVSKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~---~~ls~e~ll~lYr~M 139 (324)
...+|++-++|.+|+++ . .. ...+.+++.+..+..
T Consensus 97 i~~~P~~~lid~~G~i~-~-~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 97 VPWQPAFVFYRADGTST-F-VNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp CCSSSEEEEECTTSCEE-E-ECCSSSCCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCcEE-E-EEcCCCccCHHHHHHHHHHH
Confidence 45689999999999987 2 22 356788888777654
No 58
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=28.90 E-value=36 Score=27.76 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=26.7
Q ss_pred CCCceEEeCCC-CCcccCCCCCCCCHHHHHHHHHHHHHH
Q 020562 105 RVPCFRVLDDN-GELIKGSDFQQVSKEVAVKMYSHMVTL 142 (324)
Q Consensus 105 ~~p~~rvld~~-G~~~~~~~~~~ls~e~ll~lYr~Mv~~ 142 (324)
.-..++|+|.+ |++|. .++.|++++|.+.|..+
T Consensus 67 ~~~vVkVvD~~TgEVIR-----qIPpEe~L~l~~~l~e~ 100 (117)
T 2hc5_A 67 NEYYVKVIEDSTNEVIR-----EIPPKRWLDFYAAMTEF 100 (117)
T ss_dssp TEEEEEEEETTTTEEEE-----EECHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEE-----eCChHHHHHHHHHHHHh
Confidence 45789999988 67766 48999999999998643
No 59
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=28.86 E-value=35 Score=25.19 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=26.3
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSH 138 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~ 138 (324)
...+|.+-|+|++|+++.. .....+.+++.+..+.
T Consensus 102 v~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 102 VRSYPTQAFIDKEGKLVKT-HPGFMEKDAILQTLKE 136 (138)
T ss_dssp CCSSSEEEEECTTCCEEEE-EESCCCHHHHHHHHHH
T ss_pred cccCCeEEEECCCCcEEEe-ecCCCcHHHHHHHHHh
Confidence 4568999999999999753 2345678888877654
No 60
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=28.82 E-value=51 Score=25.66 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=28.3
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv 140 (324)
...+|.+=|+|.+|+++.. .....+.+++.++.+..+
T Consensus 114 i~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~~l 150 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVSGV-IVGPRSKADFDRIVKMAL 150 (165)
T ss_dssp SCSSSEEEEECTTSBEEEE-ECSCCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEE-EcCCCCHHHHHHHHHHHH
Confidence 4568999999999999753 223568888888877764
No 61
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=28.37 E-value=28 Score=32.78 Aligned_cols=63 Identities=19% Similarity=0.097 Sum_probs=35.7
Q ss_pred CCccCchhhhhHHHhhhhhcCCCCEEEE-EeCCCCCccchHHHHHHHHHH---------cCCCEEEEEecCCccc-cccc
Q 020562 237 SPIATQLPQAVGVAYSLKMEKKDACAVA-YTGDGGTSEGDFHAALNFAAV---------MEAPVVFICRNNGWAI-STNI 305 (324)
Q Consensus 237 s~lGtqlp~AvG~A~A~k~~g~~~Vvv~-~~GDGatSeGdfhEALNfAa~---------~~lPvIFv~eNNgyAI-StP~ 305 (324)
.+|.-|- ++|+|.++.+.|. .+++. .|++.. .-.++.+..++. .++||||++.+ ++.. ..|+
T Consensus 67 ~gIaE~~--~v~~a~G~A~~G~-rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~t 139 (341)
T 2ozl_B 67 TPISEMG--FAGIAVGAAMAGL-RPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQ 139 (341)
T ss_dssp CCSCHHH--HHHHHHHHHHTTC-EEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGG
T ss_pred CchhHHH--HHHHHHHHHHCCC-EEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcc
Confidence 3444443 4444554444552 33443 488887 344666654443 79999999996 5332 3344
Q ss_pred c
Q 020562 306 S 306 (324)
Q Consensus 306 ~ 306 (324)
+
T Consensus 140 H 140 (341)
T 2ozl_B 140 H 140 (341)
T ss_dssp G
T ss_pred h
Confidence 4
No 62
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=27.92 E-value=57 Score=25.07 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=27.2
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~M 139 (324)
...+|++-|+|++|+++... ....+.+++.++.+.+
T Consensus 106 v~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 106 INGIPRFILLDRDGKIISAN-MTRPSDPKTAEKFNEL 141 (152)
T ss_dssp CCSSCCEEEECTTSCEEESS-CCCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCeEEEcc-CCCCCHHHHHHHHHHH
Confidence 45689999999999998742 3356778888777655
No 63
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=26.84 E-value=93 Score=25.22 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.4
Q ss_pred CCCCceEEeCCCCCcccCCCCC---------CCCHHHHHHHHHHHH
Q 020562 104 KRVPCFRVLDDNGELIKGSDFQ---------QVSKEVAVKMYSHMV 140 (324)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~---------~ls~e~ll~lYr~Mv 140 (324)
..+|++-++|.+|+++....-. ..+.+++++..+.++
T Consensus 102 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l 147 (164)
T 1sen_A 102 GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ 147 (164)
T ss_dssp SCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence 4589999999999987532211 267888887777653
No 64
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=26.32 E-value=77 Score=24.05 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=26.9
Q ss_pred CCCCceEEeCCCCCcccCCCC------CCCCHHHHHHHHHHH
Q 020562 104 KRVPCFRVLDDNGELIKGSDF------QQVSKEVAVKMYSHM 139 (324)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~------~~ls~e~ll~lYr~M 139 (324)
..+|++-++|.+|+++....- ..++.+++.++.+.+
T Consensus 90 ~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 678999999999998753211 146888888887765
No 65
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=25.73 E-value=62 Score=25.82 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=25.9
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCC--CHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQV--SKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~l--s~e~ll~lYr~M 139 (324)
...+|++-++|.+|+++... ... +.+++++..+..
T Consensus 114 v~~~Pt~~~~d~~G~~~~~~--G~~~~~~~~l~~~l~~~ 150 (154)
T 2ju5_A 114 VTGFPELVFIDAEGKQLARM--GFEPGGGAAYVSKVKSA 150 (154)
T ss_dssp CCSSSEEEEECTTCCEEEEE--CCCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCEEEEe--cCCCCCHHHHHHHHHHH
Confidence 45689999999999998642 233 677777776654
No 66
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=24.71 E-value=47 Score=25.19 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv 140 (324)
...+|++-|+|.+|+++... .+.+++.+..+.++
T Consensus 112 v~~~P~~~lid~~G~i~~~~----~~~~~l~~~l~~ll 145 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARD----IQGEALTGKLKELL 145 (148)
T ss_dssp CCSSSEEEEECTTSBEEEES----CCHHHHHHHHHHHC
T ss_pred CCCcCEEEEECCCCeEEEec----CCHHHHHHHHHHHH
Confidence 45789999999999998743 27888877776653
No 67
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=24.68 E-value=73 Score=32.85 Aligned_cols=57 Identities=7% Similarity=0.086 Sum_probs=35.9
Q ss_pred hhHHHhhhhhcC-CC-CEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 246 AVGVAYSLKMEK-KD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 246 AvG~A~A~k~~g-~~-~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
++|+|-++.+.| .. .++.+| ..-++ -..+++..++..++||||++...+++. ..|++
T Consensus 421 ~vg~a~GlA~~Gg~~~P~~~~f-~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH 481 (680)
T 1gpu_A 421 MGAIMNGISAFGANYKPYGGTF-LNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH 481 (680)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEE-HHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHhcCCCceEEEeeh-HHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc
Confidence 444455555556 34 444433 22211 347788899999999999997777664 46766
No 68
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=24.12 E-value=74 Score=24.44 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=26.2
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv 140 (324)
...+|++-|+|.+|+++.. .....+.+++.+..+.++
T Consensus 104 i~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~ll 140 (153)
T 2l5o_A 104 TQVYPTSVLIGKKGEILKT-YVGEPDFGKLYQEIDTAW 140 (153)
T ss_dssp CCSSSEEEEECSSSCCCEE-EESSCCHHHHHHHHHHHH
T ss_pred CCccCeEEEECCCCcEEEE-EcCCCCHHHHHHHHHHHH
Confidence 3568999999999998753 223467787777666543
No 69
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=23.81 E-value=79 Score=24.48 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=28.1
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv 140 (324)
...+|.+=|+|.+|+++.. .....+.+++.++.+.+.
T Consensus 103 v~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQT-ITGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp SCCSSEEEEEETTTTEEEE-CCSCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCcEEEE-ECCCCCHHHHHHHHHHHH
Confidence 4578999999999998763 234578888888777653
No 70
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=22.71 E-value=77 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=26.7
Q ss_pred CCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 020562 102 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (324)
Q Consensus 102 ~~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~M 139 (324)
....+|++-++|.+|+++. ....++.+++.++.+..
T Consensus 89 ~v~~~Pt~~~~~~~G~~~~--~~G~~~~~~l~~~l~~~ 124 (136)
T 2l5l_A 89 GIRSIPSILFIPMEGKPEM--AQGAMPKASFKKAIDEF 124 (136)
T ss_dssp TCCSSCEEEEECSSSCCEE--EESCCCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcEEE--EeCCCCHHHHHHHHHHH
Confidence 3467899999999999863 23357888887776654
No 71
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=22.42 E-value=1.3e+02 Score=31.04 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=38.7
Q ss_pred CccCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 238 PIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 238 ~lGtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
+|.-|- ++|+|-++.+.+.-..++..|.+-.. -..+++..++..++||+|+....++++ ..|++
T Consensus 409 GIaE~~--~v~~a~GlA~~gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH 474 (663)
T 3kom_A 409 GVREFG--MAAIMNGLSLYGGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH 474 (663)
T ss_dssp CSCHHH--HHHHHHHHHHHSSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT
T ss_pred CccHHH--HHHHHHHHHHcCCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc
Confidence 444443 33444444445333445555665542 345788889999999999987776644 46666
No 72
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=22.31 E-value=72 Score=24.70 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=27.5
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv 140 (324)
...+|.+=|+|.+|+++.. ....++.+++.+..+.++
T Consensus 118 v~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~i~~ll 154 (160)
T 3lor_A 118 LEGTPSIILADRKGRIRQV-QFGQVDDFVLGLLLGSLL 154 (160)
T ss_dssp CCSSSEEEEECTTSBEEEE-EESCCCHHHHHHHHHHHH
T ss_pred cCccceEEEECCCCcEEEE-ecCcCCHHHHHHHHHHHH
Confidence 3568999999999999863 233577888877776653
No 73
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=22.08 E-value=1.3e+02 Score=31.01 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=35.0
Q ss_pred hhHHHhhhhhcC-CCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 020562 246 AVGVAYSLKMEK-KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNIS 306 (324)
Q Consensus 246 AvG~A~A~k~~g-~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAI--StP~~ 306 (324)
++|+|.++.+.| ...++.+| ..-+. -..+++..++..++||||++...+++. ..|++
T Consensus 414 ~~~~a~GlA~~GG~~P~~~~~-~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH 473 (673)
T 1r9j_A 414 MCAILNGLDAHDGIIPFGGTF-LNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH 473 (673)
T ss_dssp HHHHHHHHHHHSSCEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHhcCCCEEEEEeh-HHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc
Confidence 344444444554 33444444 22221 346778889999999999997777654 45666
No 74
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=21.92 E-value=66 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~M 139 (324)
...+|.+=|+|.+|+++.. .++.+++.++.+.+
T Consensus 107 v~~~P~~~lid~~G~i~~~----~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 107 IRATPTIYLLDGRKRVILK----DTSMEQLIDYLATQ 139 (142)
T ss_dssp CCSSSEEEEECTTCBEEEC----SCCHHHHHHHHHC-
T ss_pred CCCCCeEEEECCCCCEEec----CCCHHHHHHHHHHH
Confidence 4568999999999999873 47788888876654
No 75
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=21.91 E-value=53 Score=33.19 Aligned_cols=43 Identities=7% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHh
Q 020562 278 AALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFK 320 (324)
Q Consensus 278 EALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~ 320 (324)
..+++|..+++|+|++++.-|+.+++-.+..-....+|..+.+
T Consensus 356 r~i~~a~~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a 398 (527)
T 1vrg_A 356 RFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYA 398 (527)
T ss_dssp HHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHH
Confidence 3577788899999999999999998777665444445544443
No 76
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=21.58 E-value=48 Score=26.17 Aligned_cols=34 Identities=6% Similarity=0.108 Sum_probs=26.7
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCC-CHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQV-SKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~l-s~e~ll~lYr~M 139 (324)
...+|++-|+|.+|+++. .... +.+++.++.+.+
T Consensus 128 v~~~P~~~lid~~G~i~~---~g~~~~~~~l~~~l~~l 162 (165)
T 3ha9_A 128 VRSIDYIVIMDKSSNVLY---AGTTPSLGELESVIKSV 162 (165)
T ss_dssp CCSSSEEEEEETTCCEEE---EEESCCHHHHHHHHHHC
T ss_pred CCCceEEEEEcCCCcEEE---eCCCCCHHHHHHHHHHH
Confidence 456899999999999987 2345 788888877665
No 77
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=21.55 E-value=68 Score=24.87 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=27.1
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMV 140 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv 140 (324)
...+|.+=|+|.+|+++.. .....+.+++.+..+.++
T Consensus 115 v~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 115 MRGTPSLLLIDKAGDLRAH-HFGDVSELLLGAEIATLL 151 (158)
T ss_dssp CCSSSEEEEECTTSEEEEE-EESCCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCEEEE-EeCCCCHHHHHHHHHHHh
Confidence 3568999999999998763 223568888777766553
No 78
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=21.25 E-value=49 Score=33.58 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHh
Q 020562 279 ALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFK 320 (324)
Q Consensus 279 ALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~ 320 (324)
.+.++..+++|+||+|+--|+..++-.++.--...+|..+.+
T Consensus 365 fi~lcd~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a 406 (531)
T 3n6r_B 365 FVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYA 406 (531)
T ss_dssp HHHHHHHTTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHH
Confidence 466777899999999999999998776655333334444443
No 79
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=20.45 E-value=65 Score=30.43 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
.-.++.+|..+++|+|++++--|+-++.-.+
T Consensus 149 a~r~~~~A~~~~~PlI~lvdt~Ga~~g~~ae 179 (327)
T 2f9i_A 149 ALRLMKQAEKFNRPIFTFIDTKGAYPGKAAE 179 (327)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESCSCCCHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCCCCCcchhhh
Confidence 4456788888999999999988887765443
No 80
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=20.18 E-value=66 Score=30.61 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 020562 276 FHAALNFAAVMEAPVVFICRNNGWAISTNIS 306 (324)
Q Consensus 276 fhEALNfAa~~~lPvIFv~eNNgyAIStP~~ 306 (324)
.-.++.+|..+++|+|++++--|.-++.-.+
T Consensus 163 a~r~~~~A~~~~lPlI~lvDt~Ga~~g~~aE 193 (339)
T 2f9y_A 163 ALRLMQMAERFKMPIITFIDTPGAYPGVGAE 193 (339)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESCSCCSHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCCCCccchHHH
Confidence 3456778888899999998888887765443
No 81
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.10 E-value=96 Score=23.23 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=25.7
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 020562 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (324)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~M 139 (324)
...+|++-++|.+|+++.. ..-..+.+++.++.+..
T Consensus 84 v~~~Pt~~~~d~~G~~~~~-~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 84 VHAYPTLLFINSSGEVVYR-LVGAEDAPELLKKVKLG 119 (130)
T ss_dssp CCSSCEEEEECTTSCEEEE-EESCCCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcEEEE-ecCCCCHHHHHHHHHHH
Confidence 4678999999999998753 22245777777766544
Done!