BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020563
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 112 VAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLR 171
VA S+ PCKY S GC P+ K HE +C FRPY+CP G+ C G + ++ HL
Sbjct: 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 172 DDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQ-LGMAPVYMA 230
HK + + + ++ ++ + W++ + CFG +F L E + + A
Sbjct: 61 HQHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFA 118
Query: 231 FLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFF 290
++ +G +A N+ Y LE+ G+ R+LTWE TPRSI + + D L+ ++A F
Sbjct: 119 IVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLF 178
Query: 291 SGGDRKELKLRVT 303
+ + L + VT
Sbjct: 179 A--ENGNLGINVT 189
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 5/190 (2%)
Query: 115 SLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDH 174
S+ PCKY S GC P+ K +HE +C FRPY+CP G+ C G + ++ HL H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 175 KVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQ-LGMAPVYMAFLR 233
K + + + ++ ++ + W++ + CFG +F L E + + A ++
Sbjct: 61 K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 118
Query: 234 FMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGG 293
+G +A N+ Y LE+ G+ R+LTWE TPRSI + + D L+ ++A F+
Sbjct: 119 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 176
Query: 294 DRKELKLRVT 303
+ L + VT
Sbjct: 177 ENGNLGINVT 186
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 5/190 (2%)
Query: 115 SLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDH 174
S+ PCKY S GC P+ K +HE +C FRPY+CP G+ C G + ++ HL H
Sbjct: 2 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 175 KVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQ-LGMAPVYMAFLR 233
K + + + ++ ++ + W++ + CFG +F L E + + A ++
Sbjct: 62 K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 119
Query: 234 FMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGG 293
+G +A N+ Y LE+ G+ R+LTWE TPRSI + + D L+ ++A F+
Sbjct: 120 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 177
Query: 294 DRKELKLRVT 303
+ L + VT
Sbjct: 178 ENGNLGINVT 187
>pdb|1XR4|A Chain A, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
pdb|1XR4|B Chain B, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
Length = 509
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 124 SLGCPEIFPYYSK---LKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHS 180
SLG ++ Y+K L E F Y A + D+ V + D K+
Sbjct: 186 SLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQV----DLIVQVDEVGDPEKI---- 237
Query: 181 GCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETE 240
T + SNP E+ A V G YFC F + Q G +A RF+ D+
Sbjct: 238 --TAGAIRLSSNPRELLIARQAANVIEHSG-YFCDGF-SLQTGTGGASLAVTRFLEDKXR 293
Query: 241 ARNYTYSLEVGG 252
N T S +GG
Sbjct: 294 RHNITASFGLGG 305
>pdb|4AG7|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG7|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG9|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
pdb|4AG9|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
Length = 165
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 98 RQELGDIRCLALEKVAESLELPCKYMSLGC-PEIFPYYSKLKHEAICNF 145
RQ+LG + L + +SL +SL C PE+ P+YS+ + CNF
Sbjct: 114 RQKLGAVLLKTLVSLGKSL--GVYKISLECVPELLPFYSQFGFQDDCNF 160
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 45 LASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTC---KTRVHNR-CPTCRQE 100
L V++P S+H L CP+C + + + H C+ C R N+ CPTCR++
Sbjct: 42 LEIVVSP--RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKK 99
Query: 101 LGDIRCL 107
L R L
Sbjct: 100 LVSKRSL 106
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 45 LASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTC---KTRVHNR-CPTCRQE 100
L V++P S+H L CP+C + + + H C+ C R N+ CPTCR++
Sbjct: 22 LEIVVSPR--SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKK 79
Query: 101 LGDIRCL 107
L R L
Sbjct: 80 LVSKRSL 86
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 45 LASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTC---KTRVHNR-CPTCRQE 100
L V++P S+H L CP+C + + + H C+ C R N+ CPTCR++
Sbjct: 41 LEIVVSP--RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKK 98
Query: 101 LGDIRCL 107
L R L
Sbjct: 99 LVSKRSL 105
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 45 LASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHN------RCPTCR 98
+ +VIN ++ ++LECP+C + P+ H C C ++ N +CP C+
Sbjct: 11 VQNVIN----AMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 99 QEL 101
++
Sbjct: 66 NDI 68
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Query: 55 SVHELLECPVCTNS-----MYPPIHQCHNGHTLCSTCKTRVHN------RCPTCRQ 99
++ E+LECP+C S + P + C GHT+C C ++ RCP C +
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSK 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,447,159
Number of Sequences: 62578
Number of extensions: 416879
Number of successful extensions: 1349
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 24
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)