Query 020563
Match_columns 324
No_of_seqs 299 out of 1370
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 6.7E-44 2.3E-48 318.8 13.5 190 112-306 1-192 (193)
2 3hcs_A TNF receptor-associated 99.8 3.2E-21 1.1E-25 167.6 6.2 120 52-178 11-137 (170)
3 3hct_A TNF receptor-associated 99.6 2.6E-16 8.9E-21 128.9 5.1 92 52-147 11-110 (118)
4 1rmd_A RAG1; V(D)J recombinati 99.6 5.3E-16 1.8E-20 126.4 1.8 90 53-146 17-115 (116)
5 3knv_A TNF receptor-associated 99.6 3.5E-16 1.2E-20 132.6 0.2 87 54-144 26-130 (141)
6 3ztg_A E3 ubiquitin-protein li 99.1 5.2E-11 1.8E-15 92.5 3.8 69 52-122 6-85 (92)
7 1t1h_A Gspef-atpub14, armadill 99.0 9.2E-11 3.2E-15 88.4 1.7 62 54-117 3-72 (78)
8 2ecv_A Tripartite motif-contai 99.0 1.1E-10 3.8E-15 88.5 1.4 59 51-111 11-82 (85)
9 2csy_A Zinc finger protein 183 98.9 4.2E-10 1.4E-14 85.5 4.0 62 51-114 7-74 (81)
10 2egp_A Tripartite motif-contai 98.9 1.3E-10 4.4E-15 87.5 0.8 51 51-103 4-65 (79)
11 1wgm_A Ubiquitin conjugation f 98.9 6.3E-10 2.2E-14 88.4 4.5 67 51-119 14-88 (98)
12 2ecw_A Tripartite motif-contai 98.9 1.7E-10 5.7E-15 87.6 0.4 60 51-112 11-83 (85)
13 2djb_A Polycomb group ring fin 98.9 6.2E-10 2.1E-14 82.7 3.0 51 51-103 7-62 (72)
14 2kr4_A Ubiquitin conjugation f 98.9 7.4E-10 2.5E-14 85.6 3.5 64 52-117 7-77 (85)
15 2ysl_A Tripartite motif-contai 98.9 1.1E-09 3.6E-14 81.3 3.6 51 51-103 12-69 (73)
16 2yur_A Retinoblastoma-binding 98.8 1.2E-09 4.2E-14 81.7 3.0 50 51-102 7-63 (74)
17 2y43_A E3 ubiquitin-protein li 98.8 3.7E-10 1.3E-14 89.0 0.0 65 52-118 15-87 (99)
18 1jm7_B BARD1, BRCA1-associated 98.8 4.5E-10 1.5E-14 91.4 -0.1 64 52-117 15-84 (117)
19 2ecy_A TNF receptor-associated 98.8 1.8E-09 6E-14 78.8 3.0 51 51-103 7-62 (66)
20 3lrq_A E3 ubiquitin-protein li 98.8 2.1E-10 7.2E-15 91.0 -2.7 63 51-115 14-85 (100)
21 2kre_A Ubiquitin conjugation f 98.8 1.7E-09 5.7E-14 86.3 2.5 64 53-118 23-93 (100)
22 2d8t_A Dactylidin, ring finger 98.8 3E-09 1E-13 78.8 3.0 47 54-102 10-60 (71)
23 3fl2_A E3 ubiquitin-protein li 98.8 9.4E-10 3.2E-14 90.3 0.2 63 53-117 46-117 (124)
24 1bor_A Transcription factor PM 98.8 4E-09 1.4E-13 74.9 3.4 45 56-102 3-48 (56)
25 2ea6_A Ring finger protein 4; 98.7 2.5E-09 8.6E-14 78.0 2.1 50 51-102 7-67 (69)
26 2ckl_A Polycomb group ring fin 98.7 2.1E-09 7.1E-14 86.1 1.1 63 53-117 9-83 (108)
27 4ayc_A E3 ubiquitin-protein li 98.7 2E-09 7E-14 90.1 0.9 59 55-115 49-112 (138)
28 3l11_A E3 ubiquitin-protein li 98.7 4.2E-09 1.4E-13 85.2 2.5 47 54-102 10-61 (115)
29 2ysj_A Tripartite motif-contai 98.7 5.4E-09 1.8E-13 75.4 2.5 45 51-97 12-63 (63)
30 1z6u_A NP95-like ring finger p 98.7 2.2E-09 7.4E-14 91.6 0.3 60 56-117 75-143 (150)
31 1e4u_A Transcriptional repress 98.7 7.9E-09 2.7E-13 78.7 2.6 52 52-103 4-62 (78)
32 2ct2_A Tripartite motif protei 98.7 9.7E-09 3.3E-13 78.5 3.1 51 51-103 7-68 (88)
33 2ecj_A Tripartite motif-contai 98.7 9E-09 3.1E-13 72.6 2.7 45 51-97 7-58 (58)
34 2ckl_B Ubiquitin ligase protei 98.7 5.8E-09 2E-13 89.6 2.0 66 51-118 46-121 (165)
35 2yu4_A E3 SUMO-protein ligase 98.6 1.3E-08 4.4E-13 79.9 2.3 62 55-118 3-81 (94)
36 2c2l_A CHIP, carboxy terminus 98.6 2E-08 6.8E-13 92.0 3.9 63 54-118 203-273 (281)
37 1jm7_A BRCA1, breast cancer ty 98.6 1.9E-09 6.6E-14 86.2 -2.8 48 54-103 16-70 (112)
38 2ect_A Ring finger protein 126 98.6 3.8E-08 1.3E-12 73.8 4.0 50 52-103 8-64 (78)
39 2ecg_A Baculoviral IAP repeat- 98.5 4.5E-09 1.5E-13 78.9 -1.5 47 54-103 20-68 (75)
40 2ep4_A Ring finger protein 24; 98.5 4.1E-08 1.4E-12 72.9 3.1 50 52-103 8-64 (74)
41 3ng2_A RNF4, snurf, ring finge 98.5 1.6E-08 5.6E-13 74.2 0.8 47 55-103 6-63 (71)
42 2ecn_A Ring finger protein 141 98.5 2E-08 6.8E-13 73.8 1.1 51 51-103 7-60 (70)
43 2f42_A STIP1 homology and U-bo 98.5 5.3E-08 1.8E-12 85.5 2.8 63 54-118 101-171 (179)
44 1g25_A CDK-activating kinase a 98.4 3E-08 1E-12 72.0 0.5 44 58-103 2-55 (65)
45 4ic3_A E3 ubiquitin-protein li 98.4 1.3E-08 4.4E-13 76.4 -2.7 47 54-103 19-67 (74)
46 2xeu_A Ring finger protein 4; 98.4 5E-08 1.7E-12 69.9 0.5 44 58-103 2-56 (64)
47 1iym_A EL5; ring-H2 finger, ub 98.4 1.9E-07 6.4E-12 65.2 2.9 45 56-102 2-54 (55)
48 2ea5_A Cell growth regulator w 98.3 2.3E-07 7.8E-12 68.6 3.4 47 54-103 10-58 (68)
49 1x4j_A Ring finger protein 38; 98.3 3.3E-07 1.1E-11 68.3 4.1 47 55-103 19-72 (75)
50 2kiz_A E3 ubiquitin-protein li 98.3 3E-07 1E-11 67.2 2.7 48 54-103 9-63 (69)
51 2ecm_A Ring finger and CHY zin 98.3 2.4E-07 8.4E-12 64.5 2.1 43 58-102 4-54 (55)
52 1chc_A Equine herpes virus-1 r 98.3 2.6E-07 8.9E-12 67.3 2.2 44 58-103 4-52 (68)
53 2l0b_A E3 ubiquitin-protein li 98.3 2.6E-07 9E-12 71.7 1.9 46 55-102 36-88 (91)
54 3htk_C E3 SUMO-protein ligase 98.1 4.9E-07 1.7E-11 83.5 1.7 61 55-117 177-249 (267)
55 4ap4_A E3 ubiquitin ligase RNF 98.1 3.5E-07 1.2E-11 74.5 0.5 45 57-103 5-60 (133)
56 2yho_A E3 ubiquitin-protein li 98.1 3.8E-07 1.3E-11 69.3 -0.8 46 55-103 14-61 (79)
57 1v87_A Deltex protein 2; ring- 98.0 1.1E-06 3.9E-11 70.4 1.6 44 58-103 24-94 (114)
58 3t6p_A Baculoviral IAP repeat- 97.9 2.8E-06 9.6E-11 81.6 1.3 46 55-103 291-338 (345)
59 2vje_A E3 ubiquitin-protein li 97.9 2.7E-06 9.2E-11 61.9 0.7 45 57-103 6-57 (64)
60 2ecl_A Ring-box protein 2; RNF 97.8 8E-06 2.7E-10 62.0 3.0 43 58-102 14-75 (81)
61 4ap4_A E3 ubiquitin ligase RNF 97.7 5E-06 1.7E-10 67.6 0.6 46 56-103 69-125 (133)
62 2y1n_A E3 ubiquitin-protein li 97.7 7E-06 2.4E-10 79.9 1.7 45 57-103 330-379 (389)
63 2vje_B MDM4 protein; proto-onc 97.7 5E-06 1.7E-10 60.2 -0.2 44 58-103 6-56 (63)
64 1wim_A KIAA0161 protein; ring 97.6 8.3E-06 2.8E-10 63.4 0.0 41 58-100 4-61 (94)
65 2yuc_A TNF receptor-associated 97.5 5.5E-05 1.9E-09 56.3 3.7 53 116-176 15-68 (76)
66 2yre_A F-box only protein 30; 97.4 5.4E-05 1.8E-09 60.0 2.5 52 117-171 37-88 (100)
67 2yre_A F-box only protein 30; 97.4 4.6E-05 1.6E-09 60.4 1.3 58 92-151 38-98 (100)
68 2bay_A PRE-mRNA splicing facto 97.3 4.8E-05 1.6E-09 54.9 0.6 45 59-103 3-50 (61)
69 3dpl_R Ring-box protein 1; ubi 96.9 0.00025 8.6E-09 56.7 1.6 44 58-103 36-101 (106)
70 4a0k_B E3 ubiquitin-protein li 96.9 0.00015 5.2E-09 59.2 0.0 41 60-102 49-111 (117)
71 3hcs_A TNF receptor-associated 96.6 0.00055 1.9E-08 58.4 1.4 49 116-172 109-158 (170)
72 3vk6_A E3 ubiquitin-protein li 96.5 0.00091 3.1E-08 52.9 2.0 44 61-106 3-52 (101)
73 2d9k_A FLN29 gene product; zin 96.2 0.00049 1.7E-08 51.0 -0.9 48 117-172 17-64 (75)
74 2yuc_A TNF receptor-associated 95.8 0.0018 6.3E-08 47.8 0.6 43 133-178 2-44 (76)
75 2d8s_A Cellular modulator of i 95.2 0.012 4.1E-07 44.5 3.0 45 58-102 14-69 (80)
76 2ct0_A Non-SMC element 1 homol 95.1 0.016 5.4E-07 43.3 3.4 46 56-102 12-63 (74)
77 3k1l_B Fancl; UBC, ring, RWD, 94.0 0.014 4.9E-07 55.8 1.2 47 56-102 305-372 (381)
78 2cs3_A Protein C14ORF4, MY039 93.6 0.17 5.9E-06 38.3 6.2 33 56-88 12-47 (93)
79 3hct_A TNF receptor-associated 91.3 0.08 2.7E-06 42.2 2.0 64 108-177 44-110 (118)
80 2yt9_A Zinc finger-containing 90.7 0.25 8.5E-06 36.4 4.1 46 127-176 41-91 (95)
81 1rmd_A RAG1; V(D)J recombinati 90.5 0.24 8.1E-06 39.0 4.0 75 92-172 24-111 (116)
82 2eod_A TNF receptor-associated 89.7 0.13 4.5E-06 35.8 1.7 50 117-174 10-61 (66)
83 2jun_A Midline-1; B-BOX, TRIM, 89.1 0.11 3.6E-06 40.1 0.9 32 58-89 2-35 (101)
84 2d9k_A FLN29 gene product; zin 88.7 0.18 6.3E-06 36.7 1.9 33 134-170 3-36 (75)
85 1wjp_A Zinc finger protein 295 87.5 0.57 1.9E-05 35.5 4.2 37 136-176 58-95 (107)
86 2dlq_A GLI-kruppel family memb 85.6 0.89 3E-05 34.8 4.4 106 58-176 6-120 (124)
87 2ee8_A Protein ODD-skipped-rel 82.7 2.4 8.3E-05 31.5 5.7 27 146-176 72-99 (106)
88 2rpc_A Zinc finger protein ZIC 81.6 3.1 0.00011 33.3 6.3 115 55-176 21-148 (155)
89 2dmd_A Zinc finger protein 64, 80.3 0.94 3.2E-05 33.2 2.5 46 127-176 42-90 (96)
90 3knv_A TNF receptor-associated 79.7 0.42 1.4E-05 39.5 0.4 26 145-172 102-128 (141)
91 2dmi_A Teashirt homolog 3; zin 79.1 2.6 8.9E-05 31.9 4.8 38 135-176 67-106 (115)
92 2dlq_A GLI-kruppel family memb 79.1 2.8 9.5E-05 31.9 5.0 77 92-176 8-92 (124)
93 2kmk_A Zinc finger protein GFI 78.7 1.9 6.5E-05 30.3 3.7 73 93-173 3-80 (82)
94 2jne_A Hypothetical protein YF 77.3 0.73 2.5E-05 36.0 1.1 38 60-102 33-72 (101)
95 2cup_A Skeletal muscle LIM-pro 76.2 1.1 3.9E-05 34.0 1.9 46 57-102 31-77 (101)
96 2j7j_A Transcription factor II 74.8 2.9 9.8E-05 29.4 3.7 75 95-174 7-85 (85)
97 1vyx_A ORF K3, K3RING; zinc-bi 74.1 1.3 4.5E-05 31.1 1.6 46 57-102 4-58 (60)
98 2gli_A Protein (five-finger GL 71.8 6.7 0.00023 31.0 5.7 11 60-70 4-14 (155)
99 1llm_C Chimera of ZIF23-GCN4; 71.0 0.3 1E-05 35.7 -2.5 76 93-176 5-84 (88)
100 1wg2_A Zinc finger (AN1-like) 70.0 8 0.00027 27.8 5.0 43 58-100 14-56 (64)
101 3m62_A Ubiquitin conjugation f 69.6 2.4 8.2E-05 45.5 3.0 64 54-118 886-956 (968)
102 2ctd_A Zinc finger protein 512 69.4 3.9 0.00013 30.8 3.5 57 112-176 29-88 (96)
103 2ct7_A Ring finger protein 31; 66.3 4.7 0.00016 30.2 3.3 35 56-90 22-61 (86)
104 2drp_A Protein (tramtrack DNA- 65.5 4.1 0.00014 27.5 2.7 45 127-175 16-65 (66)
105 2lt7_A Transcriptional regulat 65.4 3.5 0.00012 33.1 2.7 76 93-176 24-104 (133)
106 2ct1_A Transcriptional repress 64.7 5.3 0.00018 27.9 3.2 47 127-177 21-72 (77)
107 2xqn_T Testin, TESS; metal-bin 64.5 2.1 7.3E-05 33.8 1.2 46 57-102 28-74 (126)
108 2csh_A Zinc finger protein 297 64.2 5 0.00017 30.0 3.2 46 127-176 43-91 (110)
109 1a1h_A QGSR zinc finger peptid 63.9 6.8 0.00023 27.8 3.8 74 93-174 6-86 (90)
110 2adr_A ADR1; transcription reg 62.9 8.9 0.00031 25.1 4.0 47 127-177 8-57 (60)
111 1wfp_A Zinc finger (AN1-like) 62.3 26 0.0009 25.8 6.6 44 57-100 23-66 (74)
112 1wfh_A Zinc finger (AN1-like) 62.3 15 0.00051 26.4 5.1 42 58-99 14-55 (64)
113 2eod_A TNF receptor-associated 62.2 3.3 0.00011 28.3 1.6 32 140-176 3-34 (66)
114 3uk3_C Zinc finger protein 217 61.2 4.7 0.00016 26.2 2.3 45 127-175 10-57 (57)
115 2jmo_A Parkin; IBR, E3 ligase, 60.0 8.6 0.0003 28.4 3.7 40 59-100 25-76 (80)
116 2jrp_A Putative cytoplasmic pr 59.9 3.5 0.00012 31.1 1.5 38 60-102 3-42 (81)
117 2i13_A AART; DNA binding, zinc 57.9 7.2 0.00025 32.2 3.4 76 93-176 79-159 (190)
118 3nw0_A Non-structural maintena 57.7 4.6 0.00016 36.2 2.2 44 58-102 179-228 (238)
119 1x61_A Thyroid receptor intera 57.4 3 0.0001 29.5 0.7 40 58-97 32-71 (72)
120 1z60_A TFIIH basal transcripti 57.2 4.9 0.00017 28.4 1.8 37 61-97 17-58 (59)
121 2d9h_A Zinc finger protein 692 56.4 5.8 0.0002 27.7 2.2 47 127-177 13-65 (78)
122 1iml_A CRIP, cysteine rich int 55.5 5.6 0.00019 28.4 2.0 45 57-101 25-71 (76)
123 1dl6_A Transcription factor II 54.1 10 0.00036 26.4 3.1 37 51-89 3-39 (58)
124 1wfl_A Zinc finger protein 216 54.1 28 0.00097 25.6 5.6 41 59-99 25-65 (74)
125 2rpc_A Zinc finger protein ZIC 52.9 23 0.00079 27.9 5.6 79 92-176 26-118 (155)
126 2jny_A Uncharacterized BCR; st 51.4 5.9 0.0002 28.7 1.5 34 53-89 4-37 (67)
127 2i13_A AART; DNA binding, zinc 51.3 11 0.00039 31.0 3.5 75 93-175 51-130 (190)
128 2gqj_A Zinc finger protein KIA 50.8 5.9 0.0002 29.4 1.5 55 115-177 22-81 (98)
129 2ebt_A Krueppel-like factor 5; 50.0 20 0.00069 25.7 4.4 44 126-173 52-98 (100)
130 1x68_A FHL5 protein; four-and- 49.5 11 0.00037 26.9 2.7 39 58-96 34-73 (76)
131 1x5w_A Zinc finger protein 64, 49.0 11 0.00039 25.6 2.7 46 127-176 15-63 (70)
132 1bbo_A Human enhancer-binding 48.7 19 0.00065 23.0 3.7 45 127-175 7-54 (57)
133 2jr6_A UPF0434 protein NMA0874 48.1 8.4 0.00029 27.9 1.9 33 54-89 3-35 (68)
134 2jtn_A LIM domain-binding prot 48.0 6.3 0.00022 33.3 1.4 12 60-71 61-72 (182)
135 2gli_A Protein (five-finger GL 47.3 32 0.0011 26.9 5.5 37 135-173 54-92 (155)
136 1z2q_A LM5-1; membrane protein 45.9 24 0.00083 26.1 4.3 35 55-89 17-54 (84)
137 2js4_A UPF0434 protein BB2007; 45.6 8.8 0.0003 27.9 1.7 33 54-89 3-35 (70)
138 1x4u_A Zinc finger, FYVE domai 45.1 18 0.00062 26.8 3.4 35 55-89 10-47 (84)
139 2lv2_A Insulinoma-associated p 44.1 17 0.00058 26.9 3.1 46 127-176 34-82 (85)
140 1x3c_A Zinc finger protein 292 44.1 14 0.00047 27.2 2.5 29 146-176 26-55 (73)
141 2xjy_A Rhombotin-2; oncoprotei 44.0 5.9 0.0002 31.4 0.5 46 57-102 27-77 (131)
142 2hf1_A Tetraacyldisaccharide-1 43.6 8.2 0.00028 28.0 1.2 33 54-89 3-35 (68)
143 1tf6_A Protein (transcription 43.0 35 0.0012 27.8 5.4 113 55-176 8-132 (190)
144 1weo_A Cellulose synthase, cat 42.7 21 0.00073 27.3 3.4 44 59-102 16-69 (93)
145 2rgt_A Fusion of LIM/homeobox 42.0 9.9 0.00034 31.6 1.7 45 57-102 31-76 (169)
146 2jp9_A Wilms tumor 1; DNA bind 41.9 29 0.001 25.7 4.3 49 117-171 66-117 (119)
147 2kpi_A Uncharacterized protein 41.8 10 0.00035 26.3 1.4 32 53-89 4-37 (56)
148 1rut_X Flinc4, fusion protein 41.8 5 0.00017 34.2 -0.2 46 57-102 30-80 (188)
149 2pk7_A Uncharacterized protein 40.9 8.9 0.0003 27.9 1.0 33 54-89 3-35 (69)
150 2jp9_A Wilms tumor 1; DNA bind 40.7 22 0.00076 26.4 3.4 79 92-176 7-92 (119)
151 1wfk_A Zinc finger, FYVE domai 40.6 20 0.00068 27.0 3.1 32 58-89 8-42 (88)
152 2yw8_A RUN and FYVE domain-con 40.5 18 0.0006 26.7 2.7 33 57-89 17-52 (82)
153 1m3v_A FLIN4, fusion of the LI 40.4 7.9 0.00027 30.5 0.8 46 58-103 31-81 (122)
154 1ubd_C Protein (YY1 zinc finge 40.3 28 0.00096 26.1 4.0 108 58-175 4-119 (124)
155 1weu_A Inhibitor of growth fam 39.3 56 0.0019 24.8 5.4 45 55-100 32-85 (91)
156 2wbt_A B-129; zinc finger; 2.7 39.0 26 0.00088 26.7 3.6 54 114-176 71-126 (129)
157 1x6e_A Zinc finger protein 24; 38.7 19 0.00065 24.5 2.5 45 127-175 20-67 (72)
158 1joc_A EEA1, early endosomal a 38.4 15 0.0005 29.6 2.1 32 58-89 68-102 (125)
159 2cot_A Zinc finger protein 435 38.0 39 0.0013 23.1 4.2 37 135-175 33-71 (77)
160 2wbs_A Krueppel-like factor 4; 37.2 17 0.00059 25.5 2.2 42 126-171 42-86 (89)
161 2d8z_A Four and A half LIM dom 36.7 13 0.00044 25.8 1.3 34 57-90 29-62 (70)
162 1tf6_A Protein (transcription 36.6 34 0.0012 27.9 4.2 14 59-72 42-57 (190)
163 2fiy_A Protein FDHE homolog; F 36.2 14 0.00047 34.5 1.8 44 57-100 180-231 (309)
164 2ko5_A Ring finger protein Z; 36.0 11 0.00039 29.1 1.0 50 52-103 21-73 (99)
165 1wff_A Riken cDNA 2810002D23 p 36.0 85 0.0029 23.6 5.8 42 58-99 24-66 (85)
166 2cr8_A MDM4 protein; ZF-ranbp 36.0 25 0.00085 24.1 2.6 28 54-88 6-33 (53)
167 1x4l_A Skeletal muscle LIM-pro 35.3 14 0.00048 25.8 1.4 34 57-90 33-66 (72)
168 1x4w_A Hypothetical protein FL 35.2 33 0.0011 24.8 3.3 42 58-99 14-58 (67)
169 1vfy_A Phosphatidylinositol-3- 34.7 21 0.00073 25.7 2.3 29 61-89 13-44 (73)
170 2dlk_A Novel protein; ZF-C2H2 33.5 31 0.0011 23.6 3.0 48 126-175 14-65 (79)
171 2eln_A Zinc finger protein 406 33.3 26 0.0009 21.6 2.3 25 146-172 8-33 (38)
172 2vy4_A U11/U12 small nuclear r 32.6 15 0.0005 23.3 0.9 26 117-145 5-30 (37)
173 3i2d_A E3 SUMO-protein ligase 32.5 20 0.00069 34.3 2.3 56 59-116 249-316 (371)
174 1wen_A Inhibitor of growth fam 32.5 45 0.0015 24.0 3.7 47 54-101 11-66 (71)
175 1x6h_A Transcriptional repress 32.3 39 0.0013 23.3 3.4 28 146-177 46-74 (86)
176 1fp0_A KAP-1 corepressor; PHD 31.5 1.1E+02 0.0036 23.1 5.8 10 58-67 36-45 (88)
177 1a7i_A QCRP2 (LIM1); LIM domai 30.9 13 0.00044 26.8 0.5 42 57-98 32-74 (81)
178 3t7l_A Zinc finger FYVE domain 29.8 35 0.0012 25.6 2.9 33 57-89 18-53 (90)
179 2lce_A B-cell lymphoma 6 prote 29.7 52 0.0018 22.3 3.6 45 127-175 23-70 (74)
180 2ehe_A Four and A half LIM dom 29.5 27 0.00093 24.9 2.2 34 57-90 41-74 (82)
181 1b8t_A Protein (CRP1); LIM dom 29.4 20 0.00069 30.4 1.6 13 59-71 115-127 (192)
182 2dar_A PDZ and LIM domain prot 28.9 21 0.00073 26.2 1.5 32 58-89 50-81 (90)
183 2cu8_A Cysteine-rich protein 2 28.6 20 0.00068 25.3 1.2 32 58-89 35-67 (76)
184 2cur_A Skeletal muscle LIM-pro 28.6 19 0.00063 24.9 1.0 33 58-90 30-62 (69)
185 2egq_A FHL1 protein; LIM domai 28.1 15 0.00051 26.0 0.4 31 58-88 45-75 (77)
186 1zw8_A Zinc-responsive transcr 27.9 33 0.0011 23.8 2.3 26 147-174 38-64 (64)
187 1nyp_A Pinch protein; LIM doma 27.6 15 0.0005 25.3 0.3 32 58-89 30-61 (66)
188 1y02_A CARP2, FYVE-ring finger 27.4 29 0.00099 27.8 2.1 42 58-99 18-65 (120)
189 1x4k_A Skeletal muscle LIM-pro 27.1 16 0.00056 25.4 0.5 33 58-90 32-64 (72)
190 1wyh_A SLIM 2, skeletal muscle 26.8 19 0.00063 25.1 0.8 33 58-90 32-64 (72)
191 1dvp_A HRS, hepatocyte growth 26.8 29 0.00098 30.2 2.2 31 59-89 161-194 (220)
192 4fo9_A E3 SUMO-protein ligase 26.6 31 0.0011 32.9 2.5 55 59-115 215-281 (360)
193 2k5r_A Uncharacterized protein 26.6 29 0.001 26.8 1.9 17 54-70 3-19 (97)
194 2d8x_A Protein pinch; LIM doma 25.7 16 0.00056 25.3 0.3 32 58-89 30-61 (70)
195 2iyb_E Testin, TESS, TES; LIM 25.2 21 0.00071 24.6 0.7 33 57-89 30-63 (65)
196 2cuq_A Four and A half LIM dom 25.0 31 0.0011 24.5 1.7 24 79-102 2-26 (80)
197 1ubd_C Protein (YY1 zinc finge 24.4 64 0.0022 24.0 3.6 79 92-176 6-90 (124)
198 1sp2_A SP1F2; zinc finger, tra 24.1 71 0.0024 17.2 3.0 25 146-172 1-26 (31)
199 2dlo_A Thyroid receptor-intera 23.8 32 0.0011 24.5 1.6 25 78-102 2-26 (81)
200 1wig_A KIAA1808 protein; LIM d 23.1 25 0.00085 24.8 0.8 34 57-90 29-63 (73)
201 2vrw_B P95VAV, VAV1, proto-onc 23.0 51 0.0017 31.0 3.3 37 55-91 353-393 (406)
202 1paa_A Yeast transcription fac 22.8 51 0.0017 17.4 2.1 25 147-175 2-27 (30)
203 2cor_A Pinch protein; LIM doma 22.8 31 0.0011 24.7 1.3 32 58-90 40-71 (79)
204 1b8t_A Protein (CRP1); LIM dom 22.5 23 0.00078 30.0 0.6 44 57-100 32-76 (192)
205 1g47_A Pinch protein; LIM doma 22.1 23 0.00078 24.9 0.5 33 58-90 38-70 (77)
206 1klr_A Zinc finger Y-chromosom 21.9 59 0.002 16.9 2.2 25 147-175 2-27 (30)
207 1lpv_A Doublesex protein; tran 21.8 24 0.00083 24.2 0.5 23 130-152 16-38 (52)
208 1ard_A Yeast transcription fac 21.8 71 0.0024 16.5 2.6 24 146-173 1-25 (29)
209 2co8_A NEDD9 interacting prote 21.7 45 0.0015 24.0 2.1 31 59-89 42-74 (82)
210 1x3h_A Leupaxin; paxillin fami 21.6 38 0.0013 23.9 1.7 33 58-90 40-72 (80)
211 3zyq_A Hepatocyte growth facto 21.6 42 0.0014 29.4 2.2 30 60-89 165-197 (226)
212 3pwf_A Rubrerythrin; non heme 21.4 45 0.0015 28.1 2.3 28 57-101 136-163 (170)
213 3vhs_A ATPase wrnip1; zinc fin 21.2 27 0.00093 20.5 0.6 16 127-142 12-27 (29)
214 2d8v_A Zinc finger FYVE domain 20.8 43 0.0015 24.1 1.7 35 55-90 4-38 (67)
215 1zfd_A SWI5; DNA binding motif 20.5 99 0.0034 16.6 3.1 25 146-172 2-27 (32)
216 2c6a_A Ubiquitin-protein ligas 20.1 41 0.0014 22.5 1.3 30 52-88 6-35 (46)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=6.7e-44 Score=318.80 Aligned_cols=190 Identities=32% Similarity=0.646 Sum_probs=131.7
Q ss_pred HhhhccccCCCCCCCCCcccCccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCC-CCcccceeEEEEec
Q 020563 112 VAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKV-DMHSGCTFNHRYVK 190 (324)
Q Consensus 112 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~-~~~~G~~~~~~f~~ 190 (324)
+++++++||+|+.+||.+.++|.++.+||+.|+|+||.||.+|.+|+|+|+.++|..|++.+|++ .+++|+++ +|++
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~ 78 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA 78 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence 47899999999999999999999999999999999999999888899999999999999999997 56788865 5888
Q ss_pred cCCCcccccceEEEEeeecCceeEEEEeeeeeCC-ccEEEEEEEEecCccccCCcEEEEEEeeCCceEEEEeecceeccc
Q 020563 191 SNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGM-APVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDS 269 (324)
Q Consensus 191 s~~~~v~~~~w~l~v~~cfg~~F~l~~~~~~~~~-~~v~~a~v~~iG~~~~a~~FsY~Lei~~~~r~L~~es~p~si~~~ 269 (324)
++.++.+..+|++ +++|||++|+|++++++.++ .++|+++|++||++++|++|+|+|++.+++|+|+||++|+|++++
T Consensus 79 ~~~~l~~~~~~~~-v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~ 157 (193)
T 2a25_A 79 TDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG 157 (193)
T ss_dssp ECCC----CEEEE-EEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred cccccccceeEEE-EEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence 8887777789975 89999999999999998764 577888899999999999999999999999999999999999999
Q ss_pred ccccccCCCceEEecCccceeeCCCceeeEEEEEEEE
Q 020563 270 HKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRI 306 (324)
Q Consensus 270 ~~~~~~~~D~L~i~~~~~~~f~~~~~~~l~l~V~~~i 306 (324)
+.+++++.|||+||++|+++|+++ ++|+|+|++..
T Consensus 158 ~~~~~~~~d~L~ip~~~~~~f~~~--~~L~l~v~I~~ 192 (193)
T 2a25_A 158 IATAIMNSDCLVFDTSIAQLFAEN--GNLGINVTISM 192 (193)
T ss_dssp SHHHHHTTCSEEEEHHHHHHHCSS--SEEEEEEEEEE
T ss_pred ccccccCCCEEEEcHHHHHhhcCC--CeEEEEEEEEe
Confidence 999999999999999999999774 57999996653
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.83 E-value=3.2e-21 Score=167.60 Aligned_cols=120 Identities=21% Similarity=0.415 Sum_probs=107.1
Q ss_pred CCcCCCCeeeecccccccccccccccCCceeccccccccc----CCCCCcccccCc---ccchHHHHHhhhccccCCCCC
Q 020563 52 GTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLELPCKYMS 124 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~---~rn~ale~~l~~l~v~C~~~~ 124 (324)
..+.+.+.|.||||++++..|+. +.+||+||..|+.++. ..||+||.++.. .++.++++++.++++.|+|
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n-- 87 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN-- 87 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--
T ss_pred hccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--
Confidence 45688999999999999999973 3449999999998873 489999999875 4889999999999999997
Q ss_pred CCCCcccCccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCCCC
Q 020563 125 LGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDM 178 (324)
Q Consensus 125 ~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~ 178 (324)
.||++.+++.++.+|+++|+|+++.|| +|++.+.+.+|..|+........
T Consensus 88 ~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~ 137 (170)
T 3hcs_A 88 EGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQ 137 (170)
T ss_dssp TTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCE
T ss_pred CCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCC
Confidence 599999999999999999999999998 39999999999999988877654
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.61 E-value=2.6e-16 Score=128.92 Aligned_cols=92 Identities=23% Similarity=0.493 Sum_probs=80.2
Q ss_pred CCcCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc---ccchHHHHHhhhccccCCCC
Q 020563 52 GTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLELPCKYM 123 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~---~rn~ale~~l~~l~v~C~~~ 123 (324)
..+.+.+.+.|+||++++..|+ ..| ||+||..|+.++. ..||.||.++.. .++..+++++.++++.|+|
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n- 87 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPC--GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN- 87 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS-
T ss_pred hccCCCCCCCCCcCChhhcCeEECCc--CChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC-
Confidence 4567889999999999999997 567 9999999998762 389999999875 3789999999999999997
Q ss_pred CCCCCcccCccchhhhhcccCCCc
Q 020563 124 SLGCPEIFPYYSKLKHEAICNFRP 147 (324)
Q Consensus 124 ~~GC~~~~~~~~~~~He~~C~f~p 147 (324)
.||++.+++.++.+|+++|.+..
T Consensus 88 -~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 88 -EGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp -TTCCCEEEGGGSGGGTSSSCC--
T ss_pred -CCCCCEEeeHHHHHHHHHchhhh
Confidence 69999999999999999887643
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.56 E-value=5.3e-16 Score=126.39 Aligned_cols=90 Identities=20% Similarity=0.438 Sum_probs=78.6
Q ss_pred CcCCCCeeeeccccccccccc-ccccCCceecccccccc----cCCCCCcccccCc----ccchHHHHHhhhccccCCCC
Q 020563 53 TTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD----IRCLALEKVAESLELPCKYM 123 (324)
Q Consensus 53 ~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~~~----~rn~ale~~l~~l~v~C~~~ 123 (324)
..++.+.+.||||++++..|+ +.| ||+||..|+.++ ...||.||.++.. ..+..+++++.++++.|+|.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~ 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVETSC--KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST
T ss_pred HHhccCCCCCCCCCcHhcCcEEcCC--CCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC
Confidence 356678899999999999997 577 999999999876 2579999999864 34678999999999999995
Q ss_pred CCCCCcccCccchhhhhcccCCC
Q 020563 124 SLGCPEIFPYYSKLKHEAICNFR 146 (324)
Q Consensus 124 ~~GC~~~~~~~~~~~He~~C~f~ 146 (324)
||++.+++.++++|+++|.+.
T Consensus 95 --gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 --DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp --TCCCEEEHHHHHHHHHTSCCC
T ss_pred --CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 5
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.55 E-value=3.5e-16 Score=132.61 Aligned_cols=87 Identities=29% Similarity=0.480 Sum_probs=75.8
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc------------ccchHHHHHhhhc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD------------IRCLALEKVAESL 116 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~------------~rn~ale~~l~~l 116 (324)
+.+++.|.||||++++..|+ ..| ||+||..|+.++. ..||+||.++.. .++.++++.+.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQC--GHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred ccCCcCcCCCCCChhhcCcEECCC--CCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 57889999999999999997 466 9999999999873 379999997521 3788899999999
Q ss_pred cccCCCCCCCCCcccCccchhh-hhcccC
Q 020563 117 ELPCKYMSLGCPEIFPYYSKLK-HEAICN 144 (324)
Q Consensus 117 ~v~C~~~~~GC~~~~~~~~~~~-He~~C~ 144 (324)
++.|+| .||.|.+++.+++. |+..|+
T Consensus 104 ~v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 104 PAVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp EEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred ccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 999999 69999999999998 998775
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=5.2e-11 Score=92.52 Aligned_cols=69 Identities=23% Similarity=0.521 Sum_probs=56.4
Q ss_pred CCcCCCCeeeeccccccccccc-cc-ccCCceeccccccccc-----CCCCCcccccC----cccchHHHHHhhhccccC
Q 020563 52 GTTSVHELLECPVCTNSMYPPI-HQ-CHNGHTLCSTCKTRVH-----NRCPTCRQELG----DIRCLALEKVAESLELPC 120 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi-~q-C~~GH~~C~~C~~~~~-----~~CP~Cr~~~~----~~rn~ale~~l~~l~v~C 120 (324)
..+.+.+.|.||||+++|..|+ +. | ||+||..|+.++. ..||.||.++. ...|..++++++.++-..
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTT--CCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCC--CCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 4467889999999999999997 56 7 9999999998762 48999999973 257899999998876654
Q ss_pred CC
Q 020563 121 KY 122 (324)
Q Consensus 121 ~~ 122 (324)
.+
T Consensus 84 ~~ 85 (92)
T 3ztg_A 84 GY 85 (92)
T ss_dssp TC
T ss_pred hH
Confidence 43
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.99 E-value=9.2e-11 Score=88.36 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=52.0
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc---ccchHHHHHhhhcc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLE 117 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~---~rn~ale~~l~~l~ 117 (324)
.++.+.|.||||+++|..|+ ..| ||+||..|+.++. ..||.||.++.. .+|.+++++++.+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~C--gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCC--CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 46788999999999999997 577 9999999998763 469999999863 57888888887664
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-10 Score=88.55 Aligned_cols=59 Identities=27% Similarity=0.666 Sum_probs=46.5
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceecccccccc---------cCCCCCcccccCc---ccchHHHH
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---------HNRCPTCRQELGD---IRCLALEK 111 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~---------~~~CP~Cr~~~~~---~rn~ale~ 111 (324)
...+.+.+.+.|+||++.+..|+ ++| ||+||..|+.++ ...||.||..+.. .+|..+++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDC--GHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSS--SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCC--CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 44567889999999999999997 577 999999999875 3679999998763 34444433
No 9
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.2e-10 Score=85.51 Aligned_cols=62 Identities=23% Similarity=0.541 Sum_probs=47.7
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceecccccccc---cCCCCCcccccCc--ccchHHHHHhh
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD--IRCLALEKVAE 114 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~--~rn~ale~~l~ 114 (324)
...+...+.+.|+||++.+..|+ +.| ||+||..|+.++ ...||+||.++.. ..+..+...+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 7 GGSEEEEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp CCSSCCCCCSBCSSSCSBCCSEEECTT--SCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred CCcccCCCCCCCcCCCchhcCeeEccC--CCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 34456778899999999999997 577 999999999877 3679999999863 34544444443
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.94 E-value=1.3e-10 Score=87.46 Aligned_cols=51 Identities=31% Similarity=0.808 Sum_probs=42.8
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceecccccccc----------cCCCCCcccccCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV----------HNRCPTCRQELGD 103 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~----------~~~CP~Cr~~~~~ 103 (324)
...+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++ ...||.||.++..
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTEPLSLDC--GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSSCCCCSS--SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred chHhhcccCCCCcCCCcccCCeeECCC--CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34567889999999999999997 577 999999999865 2479999998863
No 11
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.92 E-value=6.3e-10 Score=88.42 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=55.9
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCC-ceeccccccccc---CCCCCcccccCc---ccchHHHHHhhhcccc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNG-HTLCSTCKTRVH---NRCPTCRQELGD---IRCLALEKVAESLELP 119 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~G-H~~C~~C~~~~~---~~CP~Cr~~~~~---~rn~ale~~l~~l~v~ 119 (324)
.....+++.|.||||+++|+.|| ..| | |+||..|+.++. ..||.||.++.. ++|..|+++++.+.-.
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~c--G~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPS--SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTT--TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred hhhhcCcHhcCCcCccccccCCeECCC--CCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 34456788999999999999998 577 8 999999998873 579999999864 6899999998877543
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=1.7e-10 Score=87.59 Aligned_cols=60 Identities=25% Similarity=0.645 Sum_probs=46.8
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceecccccccc---------cCCCCCcccccCc---ccchHHHHH
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---------HNRCPTCRQELGD---IRCLALEKV 112 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~---------~~~CP~Cr~~~~~---~rn~ale~~ 112 (324)
...+.+.+.+.|+||++.+..|+ +.| ||.||..|+.++ ...||.||.++.. .+|..++++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADC--NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTT--SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCC--CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 34467888999999999999997 577 999999999864 3579999998863 345554443
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=6.2e-10 Score=82.75 Aligned_cols=51 Identities=25% Similarity=0.690 Sum_probs=43.7
Q ss_pred CCCcCCCCeeeeccccccccccc-c-cccCCceecccccccc---cCCCCCcccccCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~-qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
...+.+.+.+.|+||++.+..|+ + .| ||+||..|+.++ ...||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITEC--LHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSS--CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCC--CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 45577889999999999999997 3 78 999999999876 3689999998764
No 14
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.89 E-value=7.4e-10 Score=85.58 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCcCCCCeeeeccccccccccc-ccccCCceecccccccc---cCCCCCcccccCc---ccchHHHHHhhhcc
Q 020563 52 GTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD---IRCLALEKVAESLE 117 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~---~rn~ale~~l~~l~ 117 (324)
....+++.|.||||+++|+.|| ..| ||+||..|+.++ ...||.|+.++.. .+|.++.++++.+.
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPS--GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCC--CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 3456789999999999999998 577 999999999887 3689999999864 57888988887664
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=81.25 Aligned_cols=51 Identities=27% Similarity=0.843 Sum_probs=42.9
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceecccccccccC------CCCCcccccCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVHN------RCPTCRQELGD 103 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~~------~CP~Cr~~~~~ 103 (324)
...+.+.+.+.|+||++.+..|+ +.| ||.||..|+.++.. .||.||.++..
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSEEECTT--CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHHhCccCCEeccCCcccCCeEEcCC--CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34567888999999999999997 567 99999999988742 79999998753
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.83 E-value=1.2e-09 Score=81.71 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=42.6
Q ss_pred CCCcCCCCeeeeccccccccccc-cc-ccCCceeccccccccc-----CCCCCcccccC
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQ-CHNGHTLCSTCKTRVH-----NRCPTCRQELG 102 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~q-C~~GH~~C~~C~~~~~-----~~CP~Cr~~~~ 102 (324)
...+.+.+.+.|+||++++..|+ +. | ||+||..|+.++. ..||+||.++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSS--CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCC--CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 44577889999999999999997 56 7 9999999998873 48999999754
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.83 E-value=3.7e-10 Score=89.03 Aligned_cols=65 Identities=26% Similarity=0.647 Sum_probs=53.4
Q ss_pred CCcCCCCeeeeccccccccccc-c-cccCCceecccccccc---cCCCCCcccccCc---ccchHHHHHhhhccc
Q 020563 52 GTTSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRV---HNRCPTCRQELGD---IRCLALEKVAESLEL 118 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi-~-qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~---~rn~ale~~l~~l~v 118 (324)
..+.+.+.+.|+||++.+..|+ . .| ||.||..|+.++ ...||.||.++.. .+|..++++++.++-
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCC--CCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 3456678899999999999996 4 67 999999999876 3579999999873 578889988887643
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=4.5e-10 Score=91.43 Aligned_cols=64 Identities=25% Similarity=0.532 Sum_probs=52.5
Q ss_pred CCcCCCCeeeeccccccccccc-c-cccCCceeccccccccc-CCCCCcccccCc---ccchHHHHHhhhcc
Q 020563 52 GTTSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRVH-NRCPTCRQELGD---IRCLALEKVAESLE 117 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi-~-qC~~GH~~C~~C~~~~~-~~CP~Cr~~~~~---~rn~ale~~l~~l~ 117 (324)
..+.+.+.+.||||++++..|+ + .| ||+||..|+.++. ..||.||.++.. .+|..+.+++..++
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~C--gH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGC--EHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSS--SCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCC--CCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 4456788999999999999997 4 67 9999999999874 479999999853 46888888777543
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=78.85 Aligned_cols=51 Identities=22% Similarity=0.683 Sum_probs=42.8
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD 103 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~ 103 (324)
...+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCCCSS--SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhhhcCCcCCCCCCCChHhcCeeECCC--CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34466788999999999999997 577 9999999998763 479999998753
No 20
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.79 E-value=2.1e-10 Score=91.02 Aligned_cols=63 Identities=25% Similarity=0.629 Sum_probs=49.5
Q ss_pred CCCcCCCCeeeeccccccccccc--ccccCCceecccccccc---c-CCCCCcccccCc---ccchHHHHHhhh
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV---H-NRCPTCRQELGD---IRCLALEKVAES 115 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi--~qC~~GH~~C~~C~~~~---~-~~CP~Cr~~~~~---~rn~ale~~l~~ 115 (324)
.....+.+.+.|+||++++..|+ ..| ||+||..|+.+| . ..||.||.++.. .+++.++.+++.
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHC--SKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHH
T ss_pred cccccCCCCCCCccCCccccCccccCCC--CChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHH
Confidence 34467889999999999999996 467 999999999877 2 589999999864 356555555443
No 21
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.79 E-value=1.7e-09 Score=86.27 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred CcCCCCeeeeccccccccccc-ccccCCceeccccccccc---CCCCCcccccCc---ccchHHHHHhhhccc
Q 020563 53 TTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH---NRCPTCRQELGD---IRCLALEKVAESLEL 118 (324)
Q Consensus 53 ~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~~~---~rn~ale~~l~~l~v 118 (324)
...+++.|.||||+++|+.|| ..| ||+||..|+.++. ..||.|+.++.. .+|..+.++++.+.-
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPS--GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETT--TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCC--CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 356788999999999999998 577 9999999998873 689999999864 688999998887653
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=78.79 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=40.1
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc---CCCCCcccccC
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH---NRCPTCRQELG 102 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~~ 102 (324)
....+.+.|+||++.+..|+ +.| ||.||..|+.+|. ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETT--TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEccC--CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 44567889999999999997 577 9999999998763 57999999875
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.76 E-value=9.4e-10 Score=90.25 Aligned_cols=63 Identities=32% Similarity=0.711 Sum_probs=52.0
Q ss_pred CcCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc----ccchHHHHHhhhcc
Q 020563 53 TTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD----IRCLALEKVAESLE 117 (324)
Q Consensus 53 ~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~----~rn~ale~~l~~l~ 117 (324)
...+.+.+.||||++++..|+ +.| ||+||..|+.++. ..||.||.++.. .+|..+.++++.+.
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVC--QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred HHhCccCCCCCcCChHHcCcEEeeC--CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 356678899999999999997 677 9999999998762 389999999864 47888888887653
No 24
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=4e-09 Score=74.92 Aligned_cols=45 Identities=31% Similarity=0.675 Sum_probs=39.8
Q ss_pred CCCeeeeccccccccccc-ccccCCceecccccccccCCCCCcccccC
Q 020563 56 VHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRCPTCRQELG 102 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~ 102 (324)
..+.+.|+||++.+..|+ +.| ||+||..|+.++...||.||..+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCeEEcCC--CCcccHHHHccCCCCCCcCCcEee
Confidence 457788999999999996 688 999999999887778999999875
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.5e-09 Score=78.00 Aligned_cols=50 Identities=30% Similarity=0.812 Sum_probs=41.5
Q ss_pred CCCcCCCCeeeecccccccccc-------c-ccccCCceecccccccc---cCCCCCcccccC
Q 020563 51 PGTTSVHELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELG 102 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~P-------i-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 102 (324)
.....+.+.+.|+||++.+..| + ..| ||.||..|+.+| ...||+||.++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 7 GTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSS--SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccccCCCCCCCCcccCccccccccccCCeEeCCC--CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3445678899999999999876 4 467 999999999887 368999999875
No 26
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.72 E-value=2.1e-09 Score=86.10 Aligned_cols=63 Identities=24% Similarity=0.537 Sum_probs=51.5
Q ss_pred CcCCCCeeeecccccccccccc--cccCCceecccccccc---cCCCCCcccccCc-------ccchHHHHHhhhcc
Q 020563 53 TTSVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRV---HNRCPTCRQELGD-------IRCLALEKVAESLE 117 (324)
Q Consensus 53 ~~~l~~~L~CpIC~~~l~~Pi~--qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~-------~rn~ale~~l~~l~ 117 (324)
.+.+.+.+.|+||++++..|+. .| ||+||..|+.++ ...||.||..+.. ..|..++++++.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIEC--LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hhccCCcCCCccCChHHhCcCEeCCC--CChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 3567889999999999999973 67 999999999877 3689999998763 35777888877653
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.71 E-value=2e-09 Score=90.07 Aligned_cols=59 Identities=24% Similarity=0.686 Sum_probs=45.2
Q ss_pred CCCCeeeeccccccccccc-ccccCCceecccccccc---cCCCCCcccccCc-ccchHHHHHhhh
Q 020563 55 SVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD-IRCLALEKVAES 115 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~-~rn~ale~~l~~ 115 (324)
.+.+.+.||||++.+..|+ +.| ||.||..|+.+| ...||.||.++.. ..+..+..++..
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~ 112 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINK 112 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETT--SCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHH
T ss_pred hccccCCCcccCcccCCceECCC--CCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHH
Confidence 3456789999999999997 577 999999999876 3679999999864 344444444433
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.71 E-value=4.2e-09 Score=85.16 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=40.7
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccC
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELG 102 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~ 102 (324)
..+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||.||..+.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPC--NHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTT--SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred cCCCCCCCCccCCcccCceeEcCC--CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45677899999999999997 677 9999999998873 47999999875
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=5.4e-09 Score=75.41 Aligned_cols=45 Identities=31% Similarity=0.895 Sum_probs=37.8
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceeccccccccc------CCCCCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH------NRCPTC 97 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~------~~CP~C 97 (324)
...+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTT--SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCC--CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567889999999999999997 577 9999999998773 369987
No 30
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.69 E-value=2.2e-09 Score=91.57 Aligned_cols=60 Identities=28% Similarity=0.739 Sum_probs=50.5
Q ss_pred CCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc----ccchHHHHHhhhcc
Q 020563 56 VHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD----IRCLALEKVAESLE 117 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~----~rn~ale~~l~~l~ 117 (324)
+.+.+.|+||++++..|+ +.| ||+||..|+.++. ..||+||.++.. .+|..++++++.+.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCEEcCC--CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 456789999999999997 677 9999999998763 379999999874 47888999888764
No 31
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.66 E-value=7.9e-09 Score=78.74 Aligned_cols=52 Identities=25% Similarity=0.715 Sum_probs=40.8
Q ss_pred CCcCCCCeeeecccccccc--ccc-ccccCCceecccccccc----cCCCCCcccccCc
Q 020563 52 GTTSVHELLECPVCTNSMY--PPI-HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD 103 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~--~Pi-~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~~~ 103 (324)
+...+.+.+.||||++++. ++. +.|.+||.||..|+.++ ...||.||.++..
T Consensus 4 ~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 4 SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3456788999999999995 333 45555999999999875 2589999998763
No 32
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=9.7e-09 Score=78.51 Aligned_cols=51 Identities=35% Similarity=0.851 Sum_probs=42.4
Q ss_pred CCCcCCCCeeeeccccccccc----cc-ccccCCceeccccccccc------CCCCCcccccCc
Q 020563 51 PGTTSVHELLECPVCTNSMYP----PI-HQCHNGHTLCSTCKTRVH------NRCPTCRQELGD 103 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~----Pi-~qC~~GH~~C~~C~~~~~------~~CP~Cr~~~~~ 103 (324)
...+.+.+.+.|+||++.+.. |+ +.| ||.||..|+.++. ..||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSS--SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCC--CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344678889999999999997 76 578 9999999998772 579999998753
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=9e-09 Score=72.64 Aligned_cols=45 Identities=31% Similarity=0.817 Sum_probs=37.7
Q ss_pred CCCcCCCCeeeeccccccccccc-ccccCCceecccccccc------cCCCCCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV------HNRCPTC 97 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~------~~~CP~C 97 (324)
...+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++ ...||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIEC--GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSS--CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCC--CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44567788999999999999997 677 999999999876 1468887
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.65 E-value=5.8e-09 Score=89.62 Aligned_cols=66 Identities=24% Similarity=0.588 Sum_probs=51.7
Q ss_pred CCCcCCCCeeeecccccccccccc--cccCCceeccccccccc----CCCCCcccccCc----ccchHHHHHhhhccc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRVH----NRCPTCRQELGD----IRCLALEKVAESLEL 118 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi~--qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~----~rn~ale~~l~~l~v 118 (324)
.....+.+.+.||||++++..|+. .| ||+||..|+.+|. ..||.||.++.. ..|..+++++..+.-
T Consensus 46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 46 VSPRSLHSELMCPICLDMLKNTMTTKEC--LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp ----CCHHHHBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred cchhhCCCCCCCcccChHhhCcCEeCCC--CChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 344567789999999999999973 66 9999999998873 469999999853 468889998888754
No 35
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1.3e-08 Score=79.88 Aligned_cols=62 Identities=27% Similarity=0.530 Sum_probs=50.6
Q ss_pred CCCCeeeecccccccccccc--cccCCceeccccccccc---------CCCCC--cccc-cCc---ccchHHHHHhhhcc
Q 020563 55 SVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRVH---------NRCPT--CRQE-LGD---IRCLALEKVAESLE 117 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi~--qC~~GH~~C~~C~~~~~---------~~CP~--Cr~~-~~~---~rn~ale~~l~~l~ 117 (324)
...+.|.||||+++|..||. .| ||+||..|+.++. ..||. |+.. +.. .+|.+|+++++.++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~c--Gh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVC--GHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSS--CCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCC--CCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 45678999999999999984 37 9999999998762 28999 9865 542 68999999998875
Q ss_pred c
Q 020563 118 L 118 (324)
Q Consensus 118 v 118 (324)
-
T Consensus 81 ~ 81 (94)
T 2yu4_A 81 K 81 (94)
T ss_dssp T
T ss_pred H
Confidence 4
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2e-08 Score=91.99 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=53.2
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc---ccchHHHHHhhhccc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLEL 118 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~---~rn~ale~~l~~l~v 118 (324)
.++++.|.||||+++|..|| ..| ||+||..|+.++. ..||.||.++.. ++|..++++++.+.-
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~--gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeECCC--CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 45678999999999999998 577 9999999998762 349999999864 689999999987754
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=1.9e-09 Score=86.24 Aligned_cols=48 Identities=27% Similarity=0.963 Sum_probs=40.0
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc------CCCCCcccccCc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH------NRCPTCRQELGD 103 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~------~~CP~Cr~~~~~ 103 (324)
+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||.||.++..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HhccCCCCCcccChhhcCeEECCC--CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34567889999999999997 577 9999999998763 279999998863
No 38
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.56 E-value=3.8e-08 Score=73.84 Aligned_cols=50 Identities=32% Similarity=0.677 Sum_probs=40.5
Q ss_pred CCcCCCCeeeeccccccccccc----ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 52 GTTSVHELLECPVCTNSMYPPI----HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi----~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
..+.+.+.+.|+||++.+..+. +.| ||.||..|+.+| ...||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPC--NHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTT--SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCC--CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456677889999999998653 367 999999999877 3689999998763
No 39
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.5e-09 Score=78.94 Aligned_cols=47 Identities=26% Similarity=0.684 Sum_probs=40.7
Q ss_pred cCCCCeeeeccccccccccc-ccccCCce-ecccccccccCCCCCcccccCc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 103 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~~~ 103 (324)
+.+.+.+.|+||++.+..|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCCSSS--CCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEEecC--CCHHHHHHHhhCC-CCCccCCceecC
Confidence 44567889999999999997 588 999 999999876 799999998864
No 40
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=4.1e-08 Score=72.92 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=40.7
Q ss_pred CCcCCCCeeeeccccccccccc-c---cccCCceecccccccc---cCCCCCcccccCc
Q 020563 52 GTTSVHELLECPVCTNSMYPPI-H---QCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi-~---qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
...++.+...|+||++.+..+. . .| ||.||..|+.+| ...||.||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C--~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPC--KHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETT--TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCC--CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3456777889999999998664 2 67 999999999887 3689999998764
No 41
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.52 E-value=1.6e-08 Score=74.20 Aligned_cols=47 Identities=32% Similarity=0.902 Sum_probs=39.3
Q ss_pred CCCCeeeecccccccccc-------c-ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 55 SVHELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~P-------i-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
...+.+.|+||++.+..| + ..| ||.||..|+.+| ...||.||.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCC--CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 445788999999999877 4 467 999999999877 3689999998763
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2e-08 Score=73.83 Aligned_cols=51 Identities=25% Similarity=0.692 Sum_probs=41.7
Q ss_pred CCCcCCCCeeeecccccccccccccccCCceecccccccc---cCCCCCcccccCc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
.....+.+.+.|+||++.+..-++.| ||.||..|+.+| ...||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 7 GRVKQLTDEEECCICMDGRADLILPC--AHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCCCSSSCCSCCSEEETT--TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hhhhcCCCCCCCeeCCcCccCcccCC--CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34456778899999999998833678 999999999877 3689999998763
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.46 E-value=5.3e-08 Score=85.48 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=53.3
Q ss_pred cCCCCeeeeccccccccccc-ccccCCceeccccccccc----CCCCCcccccCc---ccchHHHHHhhhccc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLEL 118 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~~~---~rn~ale~~l~~l~v 118 (324)
..+++.|.||||+++|..|| ..| ||+||..|+.++. ..||.|+.++.. ++|.+|.+++..+.-
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~--Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCC--CCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 56789999999999999998 466 9999999998762 359999999864 689999999887653
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=3e-08 Score=71.97 Aligned_cols=44 Identities=34% Similarity=0.862 Sum_probs=36.8
Q ss_pred Ceeeeccccc-cccccc-----ccccCCceecccccccc----cCCCCCcccccCc
Q 020563 58 ELLECPVCTN-SMYPPI-----HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~-~l~~Pi-----~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~~~ 103 (324)
+.+.||||++ ++..|+ ..| ||+||..|+.++ ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCC--CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 898883 478 999999999887 2579999998763
No 45
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.38 E-value=1.3e-08 Score=76.36 Aligned_cols=47 Identities=26% Similarity=0.684 Sum_probs=41.2
Q ss_pred cCCCCeeeeccccccccccc-ccccCCce-ecccccccccCCCCCcccccCc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 103 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~~~ 103 (324)
+.+.+.+.|+||++.+..|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETT--CCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCC--CChhHHHHhhhcC-ccCCCcCcCccC
Confidence 34567889999999999997 588 999 999999998 899999998864
No 46
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.38 E-value=5e-08 Score=69.90 Aligned_cols=44 Identities=34% Similarity=1.017 Sum_probs=37.0
Q ss_pred Ceeeecccccccccc-------c-ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 58 ELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~~l~~P-------i-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
+.+.|+||++.+..| + ..| ||.||..|+.+| ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETT--SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCC--CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467899999999876 3 467 999999999877 3689999998763
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.35 E-value=1.9e-07 Score=65.18 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=36.4
Q ss_pred CCCeeeeccccccccc---cc-cc-ccCCceecccccccc---cCCCCCcccccC
Q 020563 56 VHELLECPVCTNSMYP---PI-HQ-CHNGHTLCSTCKTRV---HNRCPTCRQELG 102 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~---Pi-~q-C~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 102 (324)
+++...|+||++.+.. ++ .. | ||.||..|+.+| ...||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCC--CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567889999999986 43 33 7 999999999887 368999998763
No 48
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.3e-07 Score=68.61 Aligned_cols=47 Identities=34% Similarity=0.735 Sum_probs=40.0
Q ss_pred cCCCCeeeeccccccccccc-ccccCCce-ecccccccccCCCCCcccccCc
Q 020563 54 TSVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 103 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi-~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~~~ 103 (324)
....+...|+||++....++ +.| ||. +|..|..++ ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPC--RHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTT--TBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECC--CChhhhHHHHhcC-CCCCCCCcchhc
Confidence 34456788999999999887 589 999 999999875 799999998864
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=3.3e-07 Score=68.29 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=38.5
Q ss_pred CCCCeeeecccccccccc---c-ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 55 SVHELLECPVCTNSMYPP---I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~P---i-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
...+...|+||++.+..+ + +.| ||.||..|+.+| ...||.||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPC--NHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETT--TEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECC--CCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 445678899999999876 2 467 999999999887 3689999998753
No 50
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.28 E-value=3e-07 Score=67.25 Aligned_cols=48 Identities=21% Similarity=0.546 Sum_probs=38.0
Q ss_pred cCCCCeeeeccccccccc---cc-ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 54 TSVHELLECPVCTNSMYP---PI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~---Pi-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
....+...|+||++.+.. ++ +.| ||.||..|+.+| ...||.||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPC--MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCC--CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 455677889999998853 23 567 999999999877 3689999998753
No 51
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.28 E-value=2.4e-07 Score=64.48 Aligned_cols=43 Identities=30% Similarity=0.708 Sum_probs=35.3
Q ss_pred Ceeeeccccccccc----cc-ccccCCceecccccccc---cCCCCCcccccC
Q 020563 58 ELLECPVCTNSMYP----PI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELG 102 (324)
Q Consensus 58 ~~L~CpIC~~~l~~----Pi-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 102 (324)
+...|+||++.+.. ++ ..| ||.||..|+.+| ...||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPC--GHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTT--SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCC--CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45779999999865 43 578 999999999887 368999998764
No 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.27 E-value=2.6e-07 Score=67.26 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=37.0
Q ss_pred Ceeeeccccccccccc--ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 58 ELLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi--~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
+...|+||++.+..|+ ..| ||.||..|+.+| ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCC--CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4567999999999873 578 999999999876 3789999998764
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.25 E-value=2.6e-07 Score=71.73 Aligned_cols=46 Identities=24% Similarity=0.613 Sum_probs=37.6
Q ss_pred CCCCeeeeccccccccc---cc-ccccCCceecccccccc---cCCCCCcccccC
Q 020563 55 SVHELLECPVCTNSMYP---PI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELG 102 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~---Pi-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~ 102 (324)
...+...|+||++.+.. ++ +.| ||.||..|+.+| ...||.||..+.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPC--HHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETT--TEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCC--CChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 45678899999998875 43 567 999999999887 368999999874
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.15 E-value=4.9e-07 Score=83.54 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=49.9
Q ss_pred CCCCeeeecccccccccccc--cccCCceeccccccccc-----CCCCC--cccccCc---ccchHHHHHhhhcc
Q 020563 55 SVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRVH-----NRCPT--CRQELGD---IRCLALEKVAESLE 117 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi~--qC~~GH~~C~~C~~~~~-----~~CP~--Cr~~~~~---~rn~ale~~l~~l~ 117 (324)
.....|.||||+++|..||. .| ||+||+.|+.++. ..||+ |+..+.. ..|..|.++++.++
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~C--GHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKC--NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSS--CCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCC--CCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 45688999999999999984 78 9999999998762 36999 9998754 57888888876644
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.14 E-value=3.5e-07 Score=74.52 Aligned_cols=45 Identities=33% Similarity=0.957 Sum_probs=38.3
Q ss_pred CCeeeecccccccccc-------c-ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 57 HELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~P-------i-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
.+.+.|+||++.+..| + ..| ||+||..|+.+| ...||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT--CCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCC--CChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4678999999999987 5 578 999999999887 3689999998864
No 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.06 E-value=3.8e-07 Score=69.34 Aligned_cols=46 Identities=30% Similarity=0.835 Sum_probs=39.8
Q ss_pred CCCCeeeeccccccccccc-ccccCCce-ecccccccccCCCCCcccccCc
Q 020563 55 SVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 103 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi-~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~~~ 103 (324)
.+.+...|+||++.+..|+ +.| ||. ||..|..++ ..||.||.++..
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 61 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPC--GHTVCCESCAAQL-QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETT--CBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred cCCCCCEeEEeCcccCcEEEECC--CCHHHHHHHHHhc-CcCCCCCchhhC
Confidence 4556778999999999997 578 999 999999987 699999998864
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.04 E-value=1.1e-06 Score=70.39 Aligned_cols=44 Identities=20% Similarity=0.619 Sum_probs=35.3
Q ss_pred Ceeeeccccccccccc-------------------ccccCCceeccccccccc--------CCCCCcccccCc
Q 020563 58 ELLECPVCTNSMYPPI-------------------HQCHNGHTLCSTCKTRVH--------NRCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi-------------------~qC~~GH~~C~~C~~~~~--------~~CP~Cr~~~~~ 103 (324)
....|+||++.|..|. ..| ||.||..|+.+|. ..||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCC--CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3458999999997652 457 9999999998763 479999998763
No 58
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.87 E-value=2.8e-06 Score=81.63 Aligned_cols=46 Identities=28% Similarity=0.795 Sum_probs=40.6
Q ss_pred CCCCeeeeccccccccccc-ccccCCce-ecccccccccCCCCCcccccCc
Q 020563 55 SVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 103 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi-~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~~~ 103 (324)
.+.+.+.|+||++.+..|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpC--gH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPC--GHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETT--CCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCC--CChhHhHHHHhcC-CcCCCCCCCccC
Confidence 4567789999999999998 578 999 999999987 899999998864
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.86 E-value=2.7e-06 Score=61.89 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=37.3
Q ss_pred CCeeeecccccccccccc---cccCCce-eccccccccc---CCCCCcccccCc
Q 020563 57 HELLECPVCTNSMYPPIH---QCHNGHT-LCSTCKTRVH---NRCPTCRQELGD 103 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~---qC~~GH~-~C~~C~~~~~---~~CP~Cr~~~~~ 103 (324)
.+...|+||++....+++ .| ||. +|..|..++. ..||.||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKT--GHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTE--EEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCC--CChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 356689999999998873 68 999 8999998763 479999998753
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=8e-06 Score=61.97 Aligned_cols=43 Identities=28% Similarity=0.723 Sum_probs=34.3
Q ss_pred Ceeeecccccccccc--------------c-c-cccCCceeccccccccc---CCCCCcccccC
Q 020563 58 ELLECPVCTNSMYPP--------------I-H-QCHNGHTLCSTCKTRVH---NRCPTCRQELG 102 (324)
Q Consensus 58 ~~L~CpIC~~~l~~P--------------i-~-qC~~GH~~C~~C~~~~~---~~CP~Cr~~~~ 102 (324)
+.-.|+||++.+..+ + . .| ||.|+..|+.+|. ..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGEC--NHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETT--SCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCC--CCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 456699999999763 2 2 36 9999999999873 67999999875
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.74 E-value=5e-06 Score=67.55 Aligned_cols=46 Identities=33% Similarity=0.912 Sum_probs=38.1
Q ss_pred CCCeeeecccccccccc-------c-ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 56 VHELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~P-------i-~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
..+.+.|+||++.+..| + ..| ||.||..|+.+| ...||+||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETT--SBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCC--CChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 35678899999999876 3 356 999999999887 4789999998764
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.74 E-value=7e-06 Score=79.88 Aligned_cols=45 Identities=29% Similarity=0.736 Sum_probs=38.2
Q ss_pred CCeeeeccccccccccc-ccccCCceecccccccc----cCCCCCcccccCc
Q 020563 57 HELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD 103 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~~~ 103 (324)
.....|+||.+.+..|+ ..| ||.||..|+.+| ...||.||.++..
T Consensus 330 ~~~~~C~ICle~~~~pv~lpC--GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETT--CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCCCCeEEeCC--CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34479999999999997 688 999999999866 3689999998764
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.69 E-value=5e-06 Score=60.22 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=36.3
Q ss_pred Ceeeeccccccccccc-c--cccCCce-eccccccccc---CCCCCcccccCc
Q 020563 58 ELLECPVCTNSMYPPI-H--QCHNGHT-LCSTCKTRVH---NRCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi-~--qC~~GH~-~C~~C~~~~~---~~CP~Cr~~~~~ 103 (324)
....|+||++....++ + .| ||. +|..|..++. ..||.||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRT--GHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTE--EEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCC--CCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3457999999998875 4 78 998 9999998763 489999998753
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.61 E-value=8.3e-06 Score=63.37 Aligned_cols=41 Identities=22% Similarity=0.591 Sum_probs=32.9
Q ss_pred Ceeeeccccccccccc-c---cccCCceeccccccccc-----------CCCCC--cccc
Q 020563 58 ELLECPVCTNSMYPPI-H---QCHNGHTLCSTCKTRVH-----------NRCPT--CRQE 100 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi-~---qC~~GH~~C~~C~~~~~-----------~~CP~--Cr~~ 100 (324)
+.+.|+||++.+..|. + .| ||.||..|+.... -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~C--gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCC--CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5678999999998875 3 48 9999999987541 26988 8887
No 65
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.53 E-value=5.5e-05 Score=56.30 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=46.0
Q ss_pred ccccCCCCCCCCCcccCccchhhhhc-ccCCCccCCCCCCCCCccccChhHHHHHhhhcCCC
Q 020563 116 LELPCKYMSLGCPEIFPYYSKLKHEA-ICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKV 176 (324)
Q Consensus 116 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~ 176 (324)
..+.|++ ||...+...++.+|++ .|+++++.|++ |++.....+|..|+ .....
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~-~~Cp~ 68 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHE-GMCPQ 68 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTT-TSCTT
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHH-hHCCC
Confidence 4677876 8999999999999998 99999999997 99999999999998 44443
No 66
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=5.4e-05 Score=59.97 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=29.0
Q ss_pred cccCCCCCCCCCcccCccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhh
Q 020563 117 ELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLR 171 (324)
Q Consensus 117 ~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~ 171 (324)
.+.||| .|...+...++++|...|+...+.|++...+|.+++.+.+|.+|++
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~ 88 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLE 88 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHH
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHh
Confidence 345553 3555555555555555555555555555555555555555555554
No 67
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=4.6e-05 Score=60.36 Aligned_cols=58 Identities=22% Similarity=0.445 Sum_probs=43.7
Q ss_pred CCCC-CcccccCcccchHHHH--HhhhccccCCCCCCCCCcccCccchhhhhcccCCCccCCC
Q 020563 92 NRCP-TCRQELGDIRCLALEK--VAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCP 151 (324)
Q Consensus 92 ~~CP-~Cr~~~~~~rn~ale~--~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP 151 (324)
-.|| .|...+- |...-|- +.-..+++|+|+.+||+.++...++.+||+.|+-..+.|.
T Consensus 38 i~CP~~Cga~i~--rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 38 IGCPLVCGAVFH--SCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp EECTTCCSCEEE--HHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eeCCcccCCeee--hhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 3588 6866332 3322222 3446788999999999999999999999999998888775
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.29 E-value=4.8e-05 Score=54.90 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=36.6
Q ss_pred eeeecccccccccccccccCCceeccccccccc---CCCCCcccccCc
Q 020563 59 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVH---NRCPTCRQELGD 103 (324)
Q Consensus 59 ~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~~~ 103 (324)
.|.|||++++|.+|+..=.+||+|+..|+.+|. ..||..+.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 478999999999998531239999999999883 579999998763
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.93 E-value=0.00025 Score=56.74 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=34.9
Q ss_pred Ceeeecccccccccc-----------------c--ccccCCceecccccccc---cCCCCCcccccCc
Q 020563 58 ELLECPVCTNSMYPP-----------------I--HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~~l~~P-----------------i--~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
+.-.|+||++.+..+ + ..| ||.|+..|+.+| ...||+||.++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT--SCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeeccc--CcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 345699999998855 2 356 999999999987 3689999998653
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.89 E-value=0.00015 Score=59.15 Aligned_cols=41 Identities=24% Similarity=0.575 Sum_probs=0.0
Q ss_pred eeecccccccccc-----------------c--ccccCCceeccccccccc---CCCCCcccccC
Q 020563 60 LECPVCTNSMYPP-----------------I--HQCHNGHTLCSTCKTRVH---NRCPTCRQELG 102 (324)
Q Consensus 60 L~CpIC~~~l~~P-----------------i--~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~~ 102 (324)
-.|+||++.+..+ + ..| ||.|+..|+.+|. ..||.||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C--~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCc--CceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4799999999753 2 256 9999999999873 68999999864
No 71
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.60 E-value=0.00055 Score=58.45 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=43.3
Q ss_pred ccccCCCCCCCCCcccCccchhhhh-cccCCCccCCCCCCCCCccccChhHHHHHhhh
Q 020563 116 LELPCKYMSLGCPEIFPYYSKLKHE-AICNFRPYNCPYAGSECSIVGDIPFLVAHLRD 172 (324)
Q Consensus 116 l~v~C~~~~~GC~~~~~~~~~~~He-~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 172 (324)
..++|+ ||.+.+...++..|+ ..|++++..|++ |+......+|..|...
T Consensus 109 ~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 109 ALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN 158 (170)
T ss_dssp SEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred eeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence 456675 899999999999998 599999999996 9999999999999854
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.51 E-value=0.00091 Score=52.86 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=34.6
Q ss_pred eecccccccccc--cccccCCceecccccccc----cCCCCCcccccCcccc
Q 020563 61 ECPVCTNSMYPP--IHQCHNGHTLCSTCKTRV----HNRCPTCRQELGDIRC 106 (324)
Q Consensus 61 ~CpIC~~~l~~P--i~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~~~~rn 106 (324)
-|++|..++..= +.+| .|.||.+|...+ .+.||.|+.++..+..
T Consensus 3 fC~~C~~Pi~iygRmIPC--kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC--KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETT--CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeeccc--cccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 489999988743 4689 999999999654 2689999999876543
No 73
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.25 E-value=0.00049 Score=50.99 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=41.7
Q ss_pred cccCCCCCCCCCcccCccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhh
Q 020563 117 ELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRD 172 (324)
Q Consensus 117 ~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 172 (324)
.+.|++ |...+...++..|+..|+.+|+.|+. |+....+.+|..|++.
T Consensus 17 ~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 17 LAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEV 64 (75)
T ss_dssp CEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHH
T ss_pred ccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHH
Confidence 566765 88999999999999999999999996 8888888999999864
No 74
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=95.83 E-value=0.0018 Score=47.85 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=37.0
Q ss_pred ccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCCCC
Q 020563 133 YYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDM 178 (324)
Q Consensus 133 ~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~ 178 (324)
..+++.|++.|+|+++.||. .|+....+.+|..|+........
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~ 44 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRR 44 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSC
T ss_pred chHHHHHHHHCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCcc
Confidence 35788999999999999996 39999999999999987776643
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.16 E-value=0.012 Score=44.45 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=34.3
Q ss_pred Ceeeecccccccc--ccc-ccccC---Cceeccccccccc-----CCCCCcccccC
Q 020563 58 ELLECPVCTNSMY--PPI-HQCHN---GHTLCSTCKTRVH-----NRCPTCRQELG 102 (324)
Q Consensus 58 ~~L~CpIC~~~l~--~Pi-~qC~~---GH~~C~~C~~~~~-----~~CP~Cr~~~~ 102 (324)
+...|.||++.+. .++ ..|.+ +|.|-..|+.+|. ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4557999998764 343 56743 3999999999983 37999999875
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.09 E-value=0.016 Score=43.32 Aligned_cols=46 Identities=20% Similarity=0.540 Sum_probs=34.9
Q ss_pred CCCeeeecccccccccccccc-cCCceecccccccc---c--CCCCCcccccC
Q 020563 56 VHELLECPVCTNSMYPPIHQC-HNGHTLCSTCKTRV---H--NRCPTCRQELG 102 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~Pi~qC-~~GH~~C~~C~~~~---~--~~CP~Cr~~~~ 102 (324)
.+..-.|.||++++.+-+ .| .++|.|=..|+.+| . ..||.||.++.
T Consensus 12 ~~~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345667999999998533 34 33899989999876 2 57999999875
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.01 E-value=0.014 Score=55.81 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=37.3
Q ss_pred CCCeeeeccccccccc----cccccc---CCceeccccccccc--------------CCCCCcccccC
Q 020563 56 VHELLECPVCTNSMYP----PIHQCH---NGHTLCSTCKTRVH--------------NRCPTCRQELG 102 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~----Pi~qC~---~GH~~C~~C~~~~~--------------~~CP~Cr~~~~ 102 (324)
.+..-+|+||+.++.+ |...|. |||.|=+.|+.+|. +.||.||.+++
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3567789999999886 555563 49999999998872 46999999875
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.58 E-value=0.17 Score=38.27 Aligned_cols=33 Identities=24% Similarity=0.607 Sum_probs=27.3
Q ss_pred CCCeeeeccccccccccc-ccccC--Cceecccccc
Q 020563 56 VHELLECPVCTNSMYPPI-HQCHN--GHTLCSTCKT 88 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~Pi-~qC~~--GH~~C~~C~~ 88 (324)
....|.|.+|.+-|..-- +||+. +|.||-.|-.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 356789999999999775 69974 8999999864
No 79
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.30 E-value=0.08 Score=42.17 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=41.8
Q ss_pred HHHHHhhhccccCCCCCCCCCcccCccchhhh---hcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCCC
Q 020563 108 ALEKVAESLELPCKYMSLGCPEIFPYYSKLKH---EAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVD 177 (324)
Q Consensus 108 ale~~l~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~ 177 (324)
.+++.+..-...||. |...+...++..- ++.=.-..+.||+.| |+|++.+.+|..|++.-+...
T Consensus 44 Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~g--C~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 44 CIIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEG--CLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp HHHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTT--CCCEEEGGGSGGGTSSSCC--
T ss_pred HHHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCC--CCCEEeeHHHHHHHHHchhhh
Confidence 355555554558987 8877766442211 122233667899764 999999999999998777653
No 80
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=90.68 E-value=0.25 Score=36.36 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCcccCc-cchhhhhcccCC---CccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 127 CPEIFPY-YSKLKHEAICNF---RPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 127 C~~~~~~-~~~~~He~~C~f---~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
|...+.. ..+..|+..-.- .++.|+. |+... ....|..|++..|..
T Consensus 41 C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence 5554433 245566554332 6789986 77655 456899999988865
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=90.46 E-value=0.24 Score=39.04 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCCCcccccCcc---c------chHHHHHhhhccccCCCCCCCCCcccCccchhh----hhcccCCCccCCCCCCCCCc
Q 020563 92 NRCPTCRQELGDI---R------CLALEKVAESLELPCKYMSLGCPEIFPYYSKLK----HEAICNFRPYNCPYAGSECS 158 (324)
Q Consensus 92 ~~CP~Cr~~~~~~---r------n~ale~~l~~l~v~C~~~~~GC~~~~~~~~~~~----He~~C~f~p~~CP~~g~~C~ 158 (324)
..||+|...+... . ..-+++.+..-...||. |...+...++.. -.+.=.-..+.||+.| |+
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~g--C~ 97 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQD--CN 97 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTT--CC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCC--Cc
Confidence 4688887765431 1 13356666554667887 887776655321 1222233567899864 99
Q ss_pred cccChhHHHHHhhh
Q 020563 159 IVGDIPFLVAHLRD 172 (324)
Q Consensus 159 ~~g~~~~L~~Hl~~ 172 (324)
|.+...++..|+..
T Consensus 98 ~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 98 EEVSLEKYNHHVSS 111 (116)
T ss_dssp CEEEHHHHHHHHHT
T ss_pred chhhHhHHHHHHHH
Confidence 99999999999964
No 82
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.66 E-value=0.13 Score=35.80 Aligned_cols=50 Identities=30% Similarity=0.636 Sum_probs=33.9
Q ss_pred cccCCCCCCCCCcccCccchhhhhcccCCCccCCC-CCCCCCcccc-ChhHHHHHhhhcC
Q 020563 117 ELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCP-YAGSECSIVG-DIPFLVAHLRDDH 174 (324)
Q Consensus 117 ~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP-~~g~~C~~~g-~~~~L~~Hl~~~H 174 (324)
.+.|+. |...+....+..|+..+.-+|+.|+ . |+... ....|..|++...
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~hc 61 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDSC 61 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTTS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhhc
Confidence 345554 7766665667788777778888888 4 66653 4458888876543
No 83
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.11 E-value=0.11 Score=40.13 Aligned_cols=32 Identities=19% Similarity=0.549 Sum_probs=24.9
Q ss_pred Ceeeeccccc-cccccccccc-CCceeccccccc
Q 020563 58 ELLECPVCTN-SMYPPIHQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~-~l~~Pi~qC~-~GH~~C~~C~~~ 89 (324)
+.+.|++|.+ ++.+|+..|. +||.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4578999996 5778874332 299999999986
No 84
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.68 E-value=0.18 Score=36.71 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.6
Q ss_pred cchhhhhc-ccCCCccCCCCCCCCCccccChhHHHHHh
Q 020563 134 YSKLKHEA-ICNFRPYNCPYAGSECSIVGDIPFLVAHL 170 (324)
Q Consensus 134 ~~~~~He~-~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl 170 (324)
.++..|+. .|+++|+.|++ |+......+|..|.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~ 36 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH----CDLELSILKLKEHE 36 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS----SCCEECHHHHHHHH
T ss_pred hHHHhhCcccCCCcccCCcc----cChHhhHHHHHHHH
Confidence 46789986 89999999996 98888999999998
No 85
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=87.49 E-value=0.57 Score=35.46 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=23.9
Q ss_pred hhhhhcccCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 136 KLKHEAICNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 136 ~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
+..|+.--.-+|+.|+. |+... ....|..|++..|..
T Consensus 58 l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 58 KQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp HHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence 34444322335788875 77655 456899999877765
No 86
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.57 E-value=0.89 Score=34.78 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=66.3
Q ss_pred Ceeeeccccccccccc-ccccCCceecccccccccCCCCCcccccCcccchHHHHH-----hhhccccCCCCCCCCCccc
Q 020563 58 ELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKV-----AESLELPCKYMSLGCPEIF 131 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~~~rn~ale~~-----l~~l~v~C~~~~~GC~~~~ 131 (324)
..+.|++|...+.... +. -|.- .-.......|+.|...+....++..-.. ...-.+.|+. |+..+
T Consensus 6 ~~~~C~~C~~~f~~~~~l~---~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f 76 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLK---VHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETF 76 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHH---HHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEE
T ss_pred CCCCCCCCCCcCCCHHHHH---HHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCcc
Confidence 4588999999887543 21 1210 0000112579999887765443332222 1234567876 88876
Q ss_pred Ccc-chhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 132 PYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 132 ~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
... .+..|+..- .-+|+.|+. |+... ....|..|++..|..
T Consensus 77 ~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 77 RRRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp SSHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence 654 577887643 457899986 77765 456999999988875
No 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=82.72 E-value=2.4 Score=31.53 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred CccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 146 RPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
+++.|+. |+... ....|..|++..+..
T Consensus 72 ~~~~C~~----C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 72 KPFKCQE----CGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CTTSCSS----SCCCCSSHHHHHHHHHHTTSC
T ss_pred CCeECCC----cCCcccCHHHHHHHHHHhCCC
Confidence 5788886 76655 456899998765543
No 88
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=81.60 E-value=3.1 Score=33.25 Aligned_cols=115 Identities=16% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCCCeeeeccccccccccc-cc-----ccCCc--eecccccccccCCCCCcccccCcccchH--HHHHhhhccccCCCCC
Q 020563 55 SVHELLECPVCTNSMYPPI-HQ-----CHNGH--TLCSTCKTRVHNRCPTCRQELGDIRCLA--LEKVAESLELPCKYMS 124 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi-~q-----C~~GH--~~C~~C~~~~~~~CP~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~ 124 (324)
+-...+.|++|...|.... +. -..+- .-...|. ...|+.|...+.....+. +..-...-.+.|+.
T Consensus 21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-- 95 (155)
T 2rpc_A 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF-- 95 (155)
T ss_dssp TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--
T ss_pred hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--
Confidence 3455788999999887553 21 00010 0011110 146999988876543322 22222334577864
Q ss_pred CCCCcccCcc-chhhhhccc-CCCccCCCCCCCCCccccC-hhHHHHHhhhcCCC
Q 020563 125 LGCPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVGD-IPFLVAHLRDDHKV 176 (324)
Q Consensus 125 ~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H~~ 176 (324)
.+|...+... .+..|+..- .-+++.|+.. .|+.... ...|..|++..+..
T Consensus 96 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~ 148 (155)
T 2rpc_A 96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHTSD 148 (155)
T ss_dssp TTTCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTTSC
T ss_pred CCCCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhcCC
Confidence 3688876654 577887643 3467899863 2766554 56899998754443
No 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=80.26 E-value=0.94 Score=33.16 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=27.3
Q ss_pred CCcccCcc-chhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 127 CPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
|...+... .+..|+..- .-+++.|+. |+... ...+|..|++..|..
T Consensus 42 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 42 CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHHHHHHTTCCSC
T ss_pred CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHhcCC
Confidence 44443332 344554432 235788986 77655 456899999876654
No 90
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=79.69 E-value=0.42 Score=39.49 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCccCCCCCCCCCccccChhHHHH-Hhhh
Q 020563 145 FRPYNCPYAGSECSIVGDIPFLVA-HLRD 172 (324)
Q Consensus 145 f~p~~CP~~g~~C~~~g~~~~L~~-Hl~~ 172 (324)
-.++.||+. +|+|++.+.++.. |+..
T Consensus 102 ~L~v~Cpn~--GC~~~~~l~~l~~~H~~~ 128 (141)
T 3knv_A 102 SLPAVCPSD--GCTWKGTLKEYESCHEGR 128 (141)
T ss_dssp TSEEECCST--TCCCEEEHHHHHHHTTTC
T ss_pred ccccccCCC--CCCCEeEHHHHHHHHHHH
Confidence 456789985 4999999999998 8765
No 91
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.13 E-value=2.6 Score=31.92 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 135 SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 135 ~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
.+..|+.. -.-+|+.|+. |+... ....|..|++..|..
T Consensus 67 ~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 67 SLLEMEGKEDAQKVLKCMY----CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp CCCCCCCSCCCCSSCBCSS----SCCBCSSHHHHHHHHHHTTTT
T ss_pred HHHHHhhccCCCcceECCC----CCCccCCHHHHHHHHHHhCCc
Confidence 34445432 2236889986 77655 456999999988765
No 92
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.09 E-value=2.8 Score=31.87 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=50.6
Q ss_pred CCCCCcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCc-cchhhhhcc----cCCCccCCCCCCCCCcccc-Ch
Q 020563 92 NRCPTCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPY-YSKLKHEAI----CNFRPYNCPYAGSECSIVG-DI 163 (324)
Q Consensus 92 ~~CP~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~----C~f~p~~CP~~g~~C~~~g-~~ 163 (324)
-.|+.|...+.....+. +..-...-.+.|+. |...+.. ..+..|+.. =.-.++.|+. |+... ..
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~ 79 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRR 79 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCH
Confidence 47999988776543332 22223345677876 8877654 467788763 3456788986 77765 45
Q ss_pred hHHHHHhhhcCCC
Q 020563 164 PFLVAHLRDDHKV 176 (324)
Q Consensus 164 ~~L~~Hl~~~H~~ 176 (324)
..|..|++..+..
T Consensus 80 ~~l~~H~~~h~~~ 92 (124)
T 2dlq_A 80 MELRLHMVSHTGE 92 (124)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCC
Confidence 6899999876554
No 93
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=78.66 E-value=1.9 Score=30.27 Aligned_cols=73 Identities=25% Similarity=0.483 Sum_probs=41.8
Q ss_pred CCCCcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHH
Q 020563 93 RCPTCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLV 167 (324)
Q Consensus 93 ~CP~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~ 167 (324)
.|+.|...+.....+. +..-...-.+.|+. |...+... .+..|+.. -.-+++.|+. |+... ....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 3667766655433222 22222334566765 77665443 45667542 2346788986 76655 456899
Q ss_pred HHhhhc
Q 020563 168 AHLRDD 173 (324)
Q Consensus 168 ~Hl~~~ 173 (324)
.|++..
T Consensus 75 ~H~~~H 80 (82)
T 2kmk_A 75 THSRKH 80 (82)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998754
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.35 E-value=0.73 Score=36.00 Aligned_cols=38 Identities=37% Similarity=0.921 Sum_probs=29.2
Q ss_pred eeecccccccccccccccCCceecccccccc--cCCCCCcccccC
Q 020563 60 LECPVCTNSMYPPIHQCHNGHTLCSTCKTRV--HNRCPTCRQELG 102 (324)
Q Consensus 60 L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~--~~~CP~Cr~~~~ 102 (324)
..||+|...|..- .|+..|..|-... ...||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-----NGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-----TTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec-----CCEEECccccchhhccccCcchhhHHH
Confidence 7899999988741 3566699997754 367999998874
No 95
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=76.25 E-value=1.1 Score=33.96 Aligned_cols=46 Identities=20% Similarity=0.565 Sum_probs=36.0
Q ss_pred CCeeeecccccccccccccccCCceecccccccc-cCCCCCcccccC
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQELG 102 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 102 (324)
.+-|.|..|...|....+.=.+|.++|..|..++ ..+|..|..+|.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 4568899999999755444456999999998775 478999988875
No 96
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=74.82 E-value=2.9 Score=29.41 Aligned_cols=75 Identities=23% Similarity=0.429 Sum_probs=43.1
Q ss_pred CCcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCcc-chhhhhcccCCCccCCCCCCCCCccccC-hhHHHHHh
Q 020563 95 PTCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPYY-SKLKHEAICNFRPYNCPYAGSECSIVGD-IPFLVAHL 170 (324)
Q Consensus 95 P~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~f~p~~CP~~g~~C~~~g~-~~~L~~Hl 170 (324)
+.|...+.....+. +..-...-.+.|+. .||+..+... .+..|+..-.- +.|+.++ .|+.... ...|..|+
T Consensus 7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l~~H~ 81 (85)
T 2j7j_A 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLYLKHV 81 (85)
T ss_dssp TTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHHHHHH
Confidence 66776665433322 22223344567764 4788776553 56677654222 7777542 3777664 56889998
Q ss_pred hhcC
Q 020563 171 RDDH 174 (324)
Q Consensus 171 ~~~H 174 (324)
+..|
T Consensus 82 ~~hh 85 (85)
T 2j7j_A 82 AECH 85 (85)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 7655
No 97
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=74.07 E-value=1.3 Score=31.15 Aligned_cols=46 Identities=13% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCeeeeccccccccccc-ccccCCc---eecccccccc-----cCCCCCcccccC
Q 020563 57 HELLECPVCTNSMYPPI-HQCHNGH---TLCSTCKTRV-----HNRCPTCRQELG 102 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi-~qC~~GH---~~C~~C~~~~-----~~~CP~Cr~~~~ 102 (324)
.+.-.|.||++-...|. ..|.+.+ .|=..|+.+| ...||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34567999998765553 5675433 4445677776 257999998764
No 98
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.79 E-value=6.7 Score=31.02 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=5.9
Q ss_pred eeecccccccc
Q 020563 60 LECPVCTNSMY 70 (324)
Q Consensus 60 L~CpIC~~~l~ 70 (324)
+.|++|...|.
T Consensus 4 ~~C~~C~~~f~ 14 (155)
T 2gli_A 4 CRWDGCSQEFD 14 (155)
T ss_dssp CCBTTCCCBCS
T ss_pred CCcCCCccccC
Confidence 44555555554
No 99
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=71.02 E-value=0.3 Score=35.71 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=45.9
Q ss_pred CCCCcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCc-cchhhhhcccCCCccCCCCCCCCCcccc-ChhHHHH
Q 020563 93 RCPTCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPY-YSKLKHEAICNFRPYNCPYAGSECSIVG-DIPFLVA 168 (324)
Q Consensus 93 ~CP~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~ 168 (324)
.|+.|...+.....+. +..-...-.+.|+. |+..+.. ..+..|...---.++.|+. |+..- ....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~----C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK----VEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH----HHHHHHHHhhhHH
Confidence 4777776665433222 22222334567765 7776655 3566776654446777875 76654 3458999
Q ss_pred HhhhcCCC
Q 020563 169 HLRDDHKV 176 (324)
Q Consensus 169 Hl~~~H~~ 176 (324)
|++..|+.
T Consensus 77 H~~~~h~~ 84 (88)
T 1llm_C 77 EVARLKKL 84 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 100
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=70.04 E-value=8 Score=27.82 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=31.7
Q ss_pred CeeeecccccccccccccccCCceecccccccccCCCCCcccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQE 100 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~~ 100 (324)
..-.|..|..-+.-+.++|.+|..||+.=+..-...|+..-+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~ 56 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE 56 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred cCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhH
Confidence 4467999999766556888889999998765444568765443
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=69.55 E-value=2.4 Score=45.53 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=52.4
Q ss_pred cCCCCeeeecccccccccccccccCC-ceecccccccc---cCCCCCcccccCc---ccchHHHHHhhhccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHNG-HTLCSTCKTRV---HNRCPTCRQELGD---IRCLALEKVAESLEL 118 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~G-H~~C~~C~~~~---~~~CP~Cr~~~~~---~rn~ale~~l~~l~v 118 (324)
.++++.|.|||=.++|++||.-.. | +++=+..+.+| ...||.=|.++.. ++|.+++..+..+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilps-G~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPA-SKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCC-CCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 567899999999999999986443 6 68999999887 3679999998864 689999988877643
No 102
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.39 E-value=3.9 Score=30.77 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=40.5
Q ss_pred HhhhccccCCCCCCCCCccc--CccchhhhhcccCCCccCCCCCCCCCccccC-hhHHHHHhhhcCCC
Q 020563 112 VAESLELPCKYMSLGCPEIF--PYYSKLKHEAICNFRPYNCPYAGSECSIVGD-IPFLVAHLRDDHKV 176 (324)
Q Consensus 112 ~l~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H~~ 176 (324)
....-.+.|+. |...+ ....|..|+....-+|+.|+. |+.... ...|..|++..|..
T Consensus 29 ~~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 29 IVDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTCC
T ss_pred hcCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcCC
Confidence 33455678876 88887 445678887766668899986 776553 56899996667754
No 103
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=66.28 E-value=4.7 Score=30.19 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=24.7
Q ss_pred CCCeeeeccccccccc----cccccc-CCceecccccccc
Q 020563 56 VHELLECPVCTNSMYP----PIHQCH-NGHTLCSTCKTRV 90 (324)
Q Consensus 56 l~~~L~CpIC~~~l~~----Pi~qC~-~GH~~C~~C~~~~ 90 (324)
.....-||-|..++.. +.++|+ +|+.||..|...+
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3444559988886642 125675 7999999998877
No 104
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=65.48 E-value=4.1 Score=27.46 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=30.1
Q ss_pred CCcccCcc-chhhhhcc-c--CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 127 CPEIFPYY-SKLKHEAI-C--NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~-C--~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|+..+... .+..|... - .-+|+.|+. |+... ....|..|++..|.
T Consensus 16 C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 66555433 45667654 2 457889986 76655 45689999988875
No 105
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=65.37 E-value=3.5 Score=33.08 Aligned_cols=76 Identities=25% Similarity=0.530 Sum_probs=43.4
Q ss_pred CCCCcccccCcccchHHHH--HhhhccccCCCCCCCCCcccCcc-chhhhhccc-CCCccCCCCCCCCCcccc-ChhHHH
Q 020563 93 RCPTCRQELGDIRCLALEK--VAESLELPCKYMSLGCPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLV 167 (324)
Q Consensus 93 ~CP~Cr~~~~~~rn~ale~--~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~ 167 (324)
.|+.|...+....++..-. -...-.+.|+. |+..+... .|..|+..= .-+|+.|+. |+..- ....|.
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~ 95 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFMS 95 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHHH
Confidence 4555655554332222111 11223456665 77665543 466676532 236788886 77655 456899
Q ss_pred HHhhhcCCC
Q 020563 168 AHLRDDHKV 176 (324)
Q Consensus 168 ~Hl~~~H~~ 176 (324)
.|++..|..
T Consensus 96 ~H~~~hh~~ 104 (133)
T 2lt7_A 96 SHIKSVHSQ 104 (133)
T ss_dssp HHHHHHTCC
T ss_pred HHhHHhcCC
Confidence 999998865
No 106
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.70 E-value=5.3 Score=27.93 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCcccCc-cchhhhhc-ccC--CCccCCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 020563 127 CPEIFPY-YSKLKHEA-ICN--FRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKVD 177 (324)
Q Consensus 127 C~~~~~~-~~~~~He~-~C~--f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 177 (324)
|...+.. ..+..|+. .-. -+++.|+. |+... ....|..|++..|...
T Consensus 21 C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCCS
T ss_pred cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCCC
Confidence 5555443 34556654 222 26889986 77765 4568999999988763
No 107
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=64.52 E-value=2.1 Score=33.81 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=36.0
Q ss_pred CCeeeecccccccccccccccCCceecccccccc-cCCCCCcccccC
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQELG 102 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 102 (324)
.+-|.|..|...|....+.-..|.++|..|..+. ..+|..|..++.
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 3568999999999864343456999999998764 478999999876
No 108
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.22 E-value=5 Score=29.98 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCcccCcc-chhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 127 CPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
|...+... .+..|+..- .-.++.|+. |+... ....|..|++..|+.
T Consensus 43 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~ 91 (110)
T 2csh_A 43 CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFHRHVTSCTKS 91 (110)
T ss_dssp TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHHHHHHHcccc
Confidence 55544332 455665432 235788986 77655 456899999887764
No 109
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=63.87 E-value=6.8 Score=27.82 Aligned_cols=74 Identities=16% Similarity=0.334 Sum_probs=41.5
Q ss_pred CCC--CcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhH
Q 020563 93 RCP--TCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPF 165 (324)
Q Consensus 93 ~CP--~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~ 165 (324)
.|+ .|...+.....+. +..-...-.+.|+. |+..+... .+..|+.. -.-+++.|+. |+... ....
T Consensus 6 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~ 77 (90)
T 1a1h_A 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDE 77 (90)
T ss_dssp ECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHH
T ss_pred ECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHH
Confidence 355 4666554432222 22222334566765 77665543 45667642 2346788986 76655 4568
Q ss_pred HHHHhhhcC
Q 020563 166 LVAHLRDDH 174 (324)
Q Consensus 166 L~~Hl~~~H 174 (324)
|..|++..+
T Consensus 78 l~~H~~~H~ 86 (90)
T 1a1h_A 78 RKRHTKIHL 86 (90)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHhc
Confidence 999987544
No 110
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=62.90 E-value=8.9 Score=25.08 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCcccCc-cchhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 020563 127 CPEIFPY-YSKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKVD 177 (324)
Q Consensus 127 C~~~~~~-~~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 177 (324)
|+..+.. ..+..|+..- .-+|+.|+. |+... ....|..|++..|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL----CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT----TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHHcCCc
Confidence 5544433 3455565432 236788986 76655 4568999998888654
No 111
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.28 E-value=26 Score=25.79 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCeeeecccccccccccccccCCceecccccccccCCCCCcccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQE 100 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~~ 100 (324)
...-.|..|..-+.-+.++|.+|.+||+.=+-.-...|+..-..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG 66 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred ccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhH
Confidence 34567999998776656889889999998765544567766443
No 112
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.26 E-value=15 Score=26.36 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=30.8
Q ss_pred CeeeecccccccccccccccCCceecccccccccCCCCCccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQ 99 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~ 99 (324)
..-.|..|..-+.-+.++|.+|..||+.=+..-...|+..-+
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk 55 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK 55 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred cCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhh
Confidence 446799999976655688988999999876544456765533
No 113
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.20 E-value=3.3 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred hcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCC
Q 020563 140 EAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKV 176 (324)
Q Consensus 140 e~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~ 176 (324)
++.|+.+|+.|+. |+.......|..|++. +..
T Consensus 3 ~~~C~~~~~~C~~----C~k~f~~~~L~~H~~~-~~~ 34 (66)
T 2eod_A 3 SGSSGKRTQPCTY----CTKEFVFDTIQSHQYQ-CPR 34 (66)
T ss_dssp SSCCCCCEEECSS----SCCEEEHHHHHHHHHH-CSS
T ss_pred cccCCCCCeeccc----cCCccCHHHHHHHHHH-cCC
Confidence 3579999999986 7766557799999887 443
No 114
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=61.20 E-value=4.7 Score=26.17 Aligned_cols=45 Identities=27% Similarity=0.484 Sum_probs=26.8
Q ss_pred CCcccCcc-chhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 127 CPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|+..+... .+..|+..- .-+|+.|+. |+... ....|..|++..|+
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 55443332 344554432 246788886 77654 45689999988774
No 115
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=60.02 E-value=8.6 Score=28.39 Aligned_cols=40 Identities=28% Similarity=0.696 Sum_probs=28.5
Q ss_pred eeeecc--ccccccc----ccccc------cCCceecccccccccCCCCCcccc
Q 020563 59 LLECPV--CTNSMYP----PIHQC------HNGHTLCSTCKTRVHNRCPTCRQE 100 (324)
Q Consensus 59 ~L~CpI--C~~~l~~----Pi~qC------~~GH~~C~~C~~~~~~~CP~Cr~~ 100 (324)
...||. |...+.. +..+| .+|+.||..|...++. -.|...
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~~ 76 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSAV 76 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSSC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccccc
Confidence 556887 8877652 23578 4799999999998854 556543
No 116
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=59.94 E-value=3.5 Score=31.12 Aligned_cols=38 Identities=34% Similarity=0.879 Sum_probs=26.9
Q ss_pred eeecccccccccccccccCCceecccccccc--cCCCCCcccccC
Q 020563 60 LECPVCTNSMYPPIHQCHNGHTLCSTCKTRV--HNRCPTCRQELG 102 (324)
Q Consensus 60 L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~--~~~CP~Cr~~~~ 102 (324)
..||.|...|..- .++..|..|-..+ ...||.|..++.
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHH
Confidence 6799999988742 2455578886654 257999988764
No 117
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=57.91 E-value=7.2 Score=32.20 Aligned_cols=76 Identities=21% Similarity=0.409 Sum_probs=44.1
Q ss_pred CCCCcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCcc-chhhhhcc-cCCCccCCCCCCCCCccccC-hhHHH
Q 020563 93 RCPTCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVGD-IPFLV 167 (324)
Q Consensus 93 ~CP~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g~-~~~L~ 167 (324)
.|+.|...+....++. +..-...-.+.|+. |+..+... .+..|+.. -.-+|+.|+. |+.... ...|.
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~ 150 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNLH 150 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHHH
Confidence 5888877665433322 22222334567765 77766554 46677653 2346777875 666553 45788
Q ss_pred HHhhhcCCC
Q 020563 168 AHLRDDHKV 176 (324)
Q Consensus 168 ~Hl~~~H~~ 176 (324)
.|++..+..
T Consensus 151 ~H~~~H~~~ 159 (190)
T 2i13_A 151 THQRTHTGE 159 (190)
T ss_dssp HHHHHHHCC
T ss_pred HHHHhcCCC
Confidence 887765544
No 118
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=57.70 E-value=4.6 Score=36.24 Aligned_cols=44 Identities=20% Similarity=0.598 Sum_probs=32.1
Q ss_pred Ceeeeccccccccccccccc-CCceecccccccc-----cCCCCCcccccC
Q 020563 58 ELLECPVCTNSMYPPIHQCH-NGHTLCSTCKTRV-----HNRCPTCRQELG 102 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~-~GH~~C~~C~~~~-----~~~CP~Cr~~~~ 102 (324)
....|.+|.+++.+- ..|. +++.|=..|+.++ ...||.|+.++.
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 477899999999853 4565 3666666777664 248999988765
No 119
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.41 E-value=3 Score=29.49 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=26.6
Q ss_pred CeeeecccccccccccccccCCceecccccccccCCCCCc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTC 97 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~C 97 (324)
+=|.|..|...|....+.=.+|.++|..|..++...|+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~~ 71 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSS 71 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSSC
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCCC
Confidence 4577888888886433333457888888877654556543
No 120
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.18 E-value=4.9 Score=28.44 Aligned_cols=37 Identities=22% Similarity=0.658 Sum_probs=27.2
Q ss_pred eecccccccccc-cccccC-Cceecccccc---cccCCCCCc
Q 020563 61 ECPVCTNSMYPP-IHQCHN-GHTLCSTCKT---RVHNRCPTC 97 (324)
Q Consensus 61 ~CpIC~~~l~~P-i~qC~~-GH~~C~~C~~---~~~~~CP~C 97 (324)
.|-.|...+... +++|+. ++.||.+|-. ..+..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 488898888654 477764 7899999943 334789987
No 121
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.40 E-value=5.8 Score=27.69 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCcccCcc-chhhhhccc----CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 020563 127 CPEIFPYY-SKLKHEAIC----NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKVD 177 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~C----~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 177 (324)
|...+... .+..|+..- .-+++.|+. |+... ....|..|++..|...
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 55554432 355555432 246788986 77665 4568999999999864
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=55.50 E-value=5.6 Score=28.39 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=32.5
Q ss_pred CCeeeecccccccccccccccCCceecc-cccccc-cCCCCCccccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCS-TCKTRV-HNRCPTCRQEL 101 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~-~C~~~~-~~~CP~Cr~~~ 101 (324)
.+-|.|..|...|..-.+.=.+|.++|. .|..+. ..+|..|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 4568899999998864333356899999 698764 46788887643
No 123
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=54.12 E-value=10 Score=26.36 Aligned_cols=37 Identities=14% Similarity=0.435 Sum_probs=25.4
Q ss_pred CCCcCCCCeeeecccccccccccccccCCceeccccccc
Q 020563 51 PGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 51 ~~~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
.+.+.+.+.+.||.|...- -++.=..|-++|..|-.-
T Consensus 3 ~~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 3 TSRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp TCSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred cchhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCE
Confidence 4556788899999997621 123334588999888543
No 124
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.07 E-value=28 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.408 Sum_probs=29.4
Q ss_pred eeeecccccccccccccccCCceecccccccccCCCCCccc
Q 020563 59 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQ 99 (324)
Q Consensus 59 ~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~ 99 (324)
.-.|..|..-+.-..+.|.+|..||+.=+..-...|+..-.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGG
T ss_pred CCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhh
Confidence 45799999865543478988999999776544456776543
No 125
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=52.94 E-value=23 Score=27.87 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=46.0
Q ss_pred CCCCCcccccCcccchHHHHHhhh---cc--------ccCCCCCCCCCcccCcc-chhhhhccc-CCCccCCCCCCCCCc
Q 020563 92 NRCPTCRQELGDIRCLALEKVAES---LE--------LPCKYMSLGCPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECS 158 (324)
Q Consensus 92 ~~CP~Cr~~~~~~rn~ale~~l~~---l~--------v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~ 158 (324)
-.|+.|...+....++..-..... .. +.|+. |...+... .+..|+..= .-+++.|+..+ |+
T Consensus 26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~ 99 (155)
T 2rpc_A 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR----EGKSFKAKYKLVNHIRVHTGEKPFPCPFPG--CG 99 (155)
T ss_dssp SSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTT----SSCCCSSHHHHHHHTHHHHCCCSEECSCTT--TC
T ss_pred cccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCC----cccccCCHHHHHHHHHhcCCCCcccCCcCC--CC
Confidence 457778776655443332221101 11 45655 77766544 567786532 34688998643 77
Q ss_pred ccc-ChhHHHHHhhhcCCC
Q 020563 159 IVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 159 ~~g-~~~~L~~Hl~~~H~~ 176 (324)
... ....|..|++..+..
T Consensus 100 ~~f~~~~~L~~H~~~h~~~ 118 (155)
T 2rpc_A 100 KIFARSENLKIHKRTHTGE 118 (155)
T ss_dssp CEESCHHHHHHHHTTTCSS
T ss_pred CccCCHHHHHHHHHhhCCC
Confidence 765 456899998865543
No 126
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=51.43 E-value=5.9 Score=28.70 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=24.1
Q ss_pred CcCCCCeeeecccccccccccccccCCceeccccccc
Q 020563 53 TTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 53 ~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
...+.+.|.||+|...|.--. ..|.++|..|...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~~---~~g~LvC~~c~~~ 37 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYLE---SEQLLVNERLNLA 37 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEET---TTTEEEETTTTEE
T ss_pred CHHHHHHhCCCCCCCcCeEeC---CCCEEEcCCCCcc
Confidence 356889999999999776322 2367777777544
No 127
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=51.35 E-value=11 Score=30.97 Aligned_cols=75 Identities=24% Similarity=0.492 Sum_probs=34.8
Q ss_pred CCCCcccccCcccchH--HHHHhhhccccCCCCCCCCCcccCc-cchhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHH
Q 020563 93 RCPTCRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPY-YSKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLV 167 (324)
Q Consensus 93 ~CP~Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~ 167 (324)
.|+.|...+.....+. +..-...-.+.|+. |+..+.. ..+..|+.. -.-+++.|+. |+... ....|.
T Consensus 51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 122 (190)
T 2i13_A 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE----CGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLR 122 (190)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHH
T ss_pred cCCCcCchhCCHHHHHHHHHhcCCCCCccCcc----cCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHH
Confidence 4666655554322221 11112223455654 6655443 245555432 2335566664 55443 334666
Q ss_pred HHhhhcCC
Q 020563 168 AHLRDDHK 175 (324)
Q Consensus 168 ~Hl~~~H~ 175 (324)
.|++..+.
T Consensus 123 ~H~~~h~~ 130 (190)
T 2i13_A 123 AHQRTHTG 130 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 66665443
No 128
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.82 E-value=5.9 Score=29.41 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=35.6
Q ss_pred hccccCCCCCCCCCcccC--ccchhhhhcccC--CCccCCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 020563 115 SLELPCKYMSLGCPEIFP--YYSKLKHEAICN--FRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKVD 177 (324)
Q Consensus 115 ~l~v~C~~~~~GC~~~~~--~~~~~~He~~C~--f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 177 (324)
.-.+.|+. |...+. ...|..|+.... -+++.|+. |+... ....|..|++..|...
T Consensus 22 ~~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 22 RGEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp TSCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCSC
T ss_pred CCCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCCC
Confidence 34556664 766654 335666665432 36788986 76655 4568999999888654
No 129
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=50.03 E-value=20 Score=25.74 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=25.2
Q ss_pred CCCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhc
Q 020563 126 GCPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDD 173 (324)
Q Consensus 126 GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 173 (324)
+|...+... .+..|+.. -.-+++.|+. |+... ....|..|++..
T Consensus 52 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 52 GCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp SCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHHHHHHHHHh
Confidence 355444332 34555432 2346788886 66655 456899997653
No 130
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.51 E-value=11 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=27.5
Q ss_pred CeeeecccccccccccccccCCceecccccccc-cCCCCC
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPT 96 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~-~~~CP~ 96 (324)
+-|.|..|...|....+.-.+|.++|..|..+. ...|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 558899999988754443356899999998765 244543
No 131
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.97 E-value=11 Score=25.55 Aligned_cols=46 Identities=28% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCcccCc-cchhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 127 CPEIFPY-YSKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 127 C~~~~~~-~~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
|...+.. ..+..|+..- .-+++.|+. |+... ....|..|++..|..
T Consensus 15 C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 15 CSYSCSSKAALRIHERIHCTDRPFKCNY----CSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp SSCEESSHHHHHHHHGGGCCSCSEECSS----SSCEESSHHHHHHHHHHHHSS
T ss_pred CCcccCCHHHHHHHHHHcCCCCCEeCCC----CCCccCCHHHHHHHHHHHhCC
Confidence 5555443 3455666542 346788986 77655 456899999887765
No 132
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=48.68 E-value=19 Score=23.01 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=27.0
Q ss_pred CCcccCc-cchhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 127 CPEIFPY-YSKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 127 C~~~~~~-~~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|+..+.. ..+..|+.. -.-+|+.|+. |+... ....|..|++..|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY----CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSS----SSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCC----CCchhcCHHHHHHHHHHhcc
Confidence 5544433 245556543 2336788886 76655 45689999876554
No 133
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=48.12 E-value=8.4 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=23.4
Q ss_pred cCCCCeeeecccccccccccccccCCceeccccccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
..+.+.|.||+|...|.--. .. |-++|..|...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~-~~--~~LiC~~cg~~ 35 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYHQ-DK--QELWSRQAKLA 35 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEET-TT--TEEEETTTTEE
T ss_pred hHHhhheECCCCCCcCeEeC-CC--CEEEcCCCCcE
Confidence 46789999999998776422 22 77777777544
No 134
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=48.01 E-value=6.3 Score=33.29 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.7
Q ss_pred eeeccccccccc
Q 020563 60 LECPVCTNSMYP 71 (324)
Q Consensus 60 L~CpIC~~~l~~ 71 (324)
-.|..|.+++..
T Consensus 61 ~~C~~C~~~I~~ 72 (182)
T 2jtn_A 61 PMCAGCDQHILD 72 (182)
T ss_dssp CBCBTSSSBCCC
T ss_pred CcCccCCCCccC
Confidence 456666665554
No 135
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=47.31 E-value=32 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=16.8
Q ss_pred chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhc
Q 020563 135 SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDD 173 (324)
Q Consensus 135 ~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 173 (324)
.+..|... -.-+|+.|+.. .|+... ....|..|++..
T Consensus 54 ~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h 92 (155)
T 2gli_A 54 MLVVHMRRHTGEKPHKCTFE--GCRKSYSRLENLKTHLRSH 92 (155)
T ss_dssp HHHHHTHHHHCCCCCCCCST--TCCCCCSSHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCccCCCC--CCCCcccCHHHHHHHHHHc
Confidence 34455432 12345556532 254433 234566666543
No 136
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.91 E-value=24 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.616 Sum_probs=25.3
Q ss_pred CCCCeeeeccccccccccc--cccc-CCceeccccccc
Q 020563 55 SVHELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
+..+.-.|.+|...|..-. ..|. +|.+||+.|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3446668999999987433 3443 299999999764
No 137
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=45.62 E-value=8.8 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.493 Sum_probs=23.0
Q ss_pred cCCCCeeeecccccccccccccccCCceeccccccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
..+.+.|.||+|...|.--. ..|-++|..|...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~~ 35 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQR---AQAELVCNADRLA 35 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEET---TTTEEEETTTTEE
T ss_pred hHHhhheECCCCCCcCEEeC---CCCEEEcCCCCce
Confidence 46789999999999876322 1366777666543
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.09 E-value=18 Score=26.76 Aligned_cols=35 Identities=20% Similarity=0.563 Sum_probs=24.7
Q ss_pred CCCCeeeeccccccccccc--cccc-CCceeccccccc
Q 020563 55 SVHELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
+..+.-.|.+|...|..-. ..|. +|.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3445567999999886432 3443 299999999764
No 139
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.08 E-value=17 Score=26.85 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=29.1
Q ss_pred CCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 127 CPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
|+..+... .|..|+.. =.-+|+.|+. |+..- ....|..|++..|..
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCTT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCcC
Confidence 44443332 45555542 2346888986 77765 456999999988864
No 140
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=44.07 E-value=14 Score=27.24 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=22.3
Q ss_pred CccCCCCCCCCCccccC-hhHHHHHhhhcCCC
Q 020563 146 RPYNCPYAGSECSIVGD-IPFLVAHLRDDHKV 176 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H~~ 176 (324)
+||.|+.++ |+.... ...|..|++..|..
T Consensus 26 KPYkC~~~~--CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 26 RPYRCVHQG--CFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp CSCBCCSTT--CCCBCSSHHHHHHHHHHHSSS
T ss_pred CCeECCCCC--cChhHcCHHHHHHHhhhhCCC
Confidence 799998754 888764 56899998777764
No 141
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=44.01 E-value=5.9 Score=31.35 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCeeeeccccccccc--ccccccCCceeccccccccc-C--CCCCcccccC
Q 020563 57 HELLECPVCTNSMYP--PIHQCHNGHTLCSTCKTRVH-N--RCPTCRQELG 102 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~--Pi~qC~~GH~~C~~C~~~~~-~--~CP~Cr~~~~ 102 (324)
.+-|.|..|...|.. ..+.-..|..+|..|..+.. . .|..|..++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 466889999999863 23334569999999987652 3 7999988774
No 142
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=43.59 E-value=8.2 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=22.7
Q ss_pred cCCCCeeeecccccccccccccccCCceeccccccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
..+.+.|.||+|...|.--. ..|-++|..|...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFDK---SKDELICKGDRLA 35 (68)
T ss_dssp CCCEEECBCTTTCCBCEEET---TTTEEEETTTTEE
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCCcE
Confidence 45778999999998776322 1366777766543
No 143
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=43.04 E-value=35 Score=27.83 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=62.2
Q ss_pred CCCCeeee--ccccccccccc-ccccCCceecccccccccCCC--CCcccccCcccchHHHH--HhhhccccCCCCCCCC
Q 020563 55 SVHELLEC--PVCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRC--PTCRQELGDIRCLALEK--VAESLELPCKYMSLGC 127 (324)
Q Consensus 55 ~l~~~L~C--pIC~~~l~~Pi-~qC~~GH~~C~~C~~~~~~~C--P~Cr~~~~~~rn~ale~--~l~~l~v~C~~~~~GC 127 (324)
.....+.| +.|...+.... ++ -|.-= =.....-.| +.|...+....++..-. -...-.+.|+. .+|
T Consensus 8 ~~~~~~~C~~~~C~~~f~~~~~L~---~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C 80 (190)
T 1tf6_A 8 VVYKRYICSFADCGAAYNKNWKLQ---AHLCK--HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS--DGC 80 (190)
T ss_dssp --CCCCBCSSTTTCCBCSSHHHHH---HHHHH--HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCS--SSC
T ss_pred CCCcceeCCCCCCcchhCCHHHHH---HHHHh--cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCC--CCC
Confidence 34567888 68998887542 21 12100 000112578 88988776543332211 11223466762 258
Q ss_pred CcccCcc-chhhhh-ccc--CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 128 PEIFPYY-SKLKHE-AIC--NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 128 ~~~~~~~-~~~~He-~~C--~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
+..+... .+..|. ..- .-.++.|+.. .|+... ....|..|++..+..
T Consensus 81 ~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~ 132 (190)
T 1tf6_A 81 DLRFTTKANMKKHFNRFHNIKICVYVCHFE--NCGKAFKKHNQLKVHQFSHTQQ 132 (190)
T ss_dssp CCEESCHHHHHHHHHTTSSTTTSCCEECSS--SSCEECSSHHHHHHHHGGGSSS
T ss_pred CCccCCHHHHHHHHHHhcCCCcceeeCCCC--CCccccCCHHHHHHHHHHhCCC
Confidence 8776554 577887 332 3457888442 387765 456899998865543
No 144
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.73 E-value=21 Score=27.32 Aligned_cols=44 Identities=20% Similarity=0.578 Sum_probs=29.6
Q ss_pred eeeeccccccccc-----cccccc-CCceecccccccc----cCCCCCcccccC
Q 020563 59 LLECPVCTNSMYP-----PIHQCH-NGHTLCSTCKTRV----HNRCPTCRQELG 102 (324)
Q Consensus 59 ~L~CpIC~~~l~~-----Pi~qC~-~GH~~C~~C~~~~----~~~CP~Cr~~~~ 102 (324)
.-.|.||.+-+-. +..-|. ++-.+|+.|.+-- ...||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3469999997531 222343 2778999998632 468999988764
No 145
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=42.01 E-value=9.9 Score=31.63 Aligned_cols=45 Identities=13% Similarity=0.377 Sum_probs=34.3
Q ss_pred CCeeeecccccccccccccccCCceecccccccc-cCCCCCcccccC
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQELG 102 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~-~~~CP~Cr~~~~ 102 (324)
.+-|.|..|...|....+ -..|..+|..|..+. ..+|..|..++.
T Consensus 31 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 466889999998875444 356899999998764 468989988765
No 146
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=41.86 E-value=29 Score=25.66 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=22.2
Q ss_pred cccCCCCCCCCCcccCcc-chhhhhcc-cCCCccCCCCCCCCCccccC-hhHHHHHhh
Q 020563 117 ELPCKYMSLGCPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVGD-IPFLVAHLR 171 (324)
Q Consensus 117 ~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g~-~~~L~~Hl~ 171 (324)
.+.|+. |+..+... .+..|+.. -.-+++.|+.+ .|+.... ...|..|++
T Consensus 66 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~ 117 (119)
T 2jp9_A 66 PFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRHHN 117 (119)
T ss_dssp CEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCST--TCCCEESSHHHHHHHHH
T ss_pred CccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCC--CCccccCCHHHHHHHHh
Confidence 455554 65554432 34455432 12345566321 1554442 345666654
No 147
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=41.78 E-value=10 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.631 Sum_probs=22.8
Q ss_pred CcCCCCeeeecccccccccccccccCCceecc--ccccc
Q 020563 53 TTSVHELLECPVCTNSMYPPIHQCHNGHTLCS--TCKTR 89 (324)
Q Consensus 53 ~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~--~C~~~ 89 (324)
+..+.+.|.||+|...|..-. |.++|. .|...
T Consensus 4 d~~lL~iL~CP~c~~~L~~~~-----~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEERD-----AELICTGQDCGLA 37 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEEET-----TEEEECSSSCCCE
T ss_pred CHHHHhheeCCCCCCcceecC-----CEEEcCCcCCCcE
Confidence 356889999999999776321 667777 66543
No 148
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=41.75 E-value=5 Score=34.17 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=34.1
Q ss_pred CCeeeeccccccccc--ccccccCCceeccccccccc-C--CCCCcccccC
Q 020563 57 HELLECPVCTNSMYP--PIHQCHNGHTLCSTCKTRVH-N--RCPTCRQELG 102 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~--Pi~qC~~GH~~C~~C~~~~~-~--~CP~Cr~~~~ 102 (324)
.+-|.|..|...|.. ..+.-..|.++|..|..+.. . .|..|..++.
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 356889999998875 23334568999999987653 3 5999988775
No 149
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=40.90 E-value=8.9 Score=27.86 Aligned_cols=33 Identities=15% Similarity=0.437 Sum_probs=22.7
Q ss_pred cCCCCeeeecccccccccccccccCCceeccccccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
..+.+.|.||+|...|.--. ..|-++|..|...
T Consensus 3 ~~LLeiL~CP~ck~~L~~~~---~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLSA---DKTELISKGAGLA 35 (69)
T ss_dssp CCGGGTCCCTTTCCCCEECT---TSSEEEETTTTEE
T ss_pred hHHHhheeCCCCCCcCeEeC---CCCEEEcCCCCcE
Confidence 45778999999998876322 1366777766543
No 150
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=40.68 E-value=22 Score=26.36 Aligned_cols=79 Identities=18% Similarity=0.340 Sum_probs=47.6
Q ss_pred CCCCC--cccccCcccchH--HHHHhhhccccCCCCCCCCCcccCcc-chhhhhccc-CCCccCCCCCCCCCcccc-Chh
Q 020563 92 NRCPT--CRQELGDIRCLA--LEKVAESLELPCKYMSLGCPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIP 164 (324)
Q Consensus 92 ~~CP~--Cr~~~~~~rn~a--le~~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~ 164 (324)
-.|+. |...+.....+. +..-...-.+.|++ ..|+..+... .+..|+..= .-+++.|+. |+... ...
T Consensus 7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~ 80 (119)
T 2jp9_A 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDF--KDCERRFSRSDQLKRHQRRHTGVKPFQCKT----CQRKFSRSD 80 (119)
T ss_dssp BCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHH
T ss_pred eeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCC--CCCcCccCCHHHHHHHHHHcCCCCCccCCc----cCchhCCHH
Confidence 35665 777665443332 22223344567764 2588776554 567776532 346789986 76655 456
Q ss_pred HHHHHhhhcCCC
Q 020563 165 FLVAHLRDDHKV 176 (324)
Q Consensus 165 ~L~~Hl~~~H~~ 176 (324)
.|..|++..+..
T Consensus 81 ~l~~H~~~h~~~ 92 (119)
T 2jp9_A 81 HLKTHTRTHTGE 92 (119)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC
Confidence 899999875554
No 151
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.59 E-value=20 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=22.9
Q ss_pred Ceeeeccccccccccc--cccc-CCceeccccccc
Q 020563 58 ELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
+.-.|.+|...|..-. ..|. +|.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3447999999887433 3443 399999999764
No 152
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.48 E-value=18 Score=26.74 Aligned_cols=33 Identities=30% Similarity=0.791 Sum_probs=23.8
Q ss_pred CCeeeeccccccccccc--cccc-CCceeccccccc
Q 020563 57 HELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
.+.-.|.+|...|..-. ..|. +|.+||+.|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44557999999987432 3443 299999999864
No 153
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.39 E-value=7.9 Score=30.49 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.3
Q ss_pred Ceeeeccccccccc--ccccccCCceecccccccc-cC--CCCCcccccCc
Q 020563 58 ELLECPVCTNSMYP--PIHQCHNGHTLCSTCKTRV-HN--RCPTCRQELGD 103 (324)
Q Consensus 58 ~~L~CpIC~~~l~~--Pi~qC~~GH~~C~~C~~~~-~~--~CP~Cr~~~~~ 103 (324)
+-|.|..|...|.. ..+.=..|.++|..|..+. .. +|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 45789999999862 2232345899999998764 34 79999888764
No 154
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=40.28 E-value=28 Score=26.13 Aligned_cols=108 Identities=22% Similarity=0.436 Sum_probs=57.3
Q ss_pred Ceeeec--cccccccccc-ccccCCceecccccccccCCCCCcccccCcccchHHHHH--hhhccccCCCCCCCCCcccC
Q 020563 58 ELLECP--VCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKV--AESLELPCKYMSLGCPEIFP 132 (324)
Q Consensus 58 ~~L~Cp--IC~~~l~~Pi-~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~~~rn~ale~~--l~~l~v~C~~~~~GC~~~~~ 132 (324)
..+.|+ +|...+.... +. -|.-=. ..+ ...|+.|...+.....+..-.. ...-.+.|+. .+|+..+.
T Consensus 4 ~~~~C~~~~C~~~f~~~~~l~---~H~~~h--~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~ 75 (124)
T 1ubd_C 4 RTIACPHKGCTKMFRDNSAMR---KHLHTH--GPR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFS 75 (124)
T ss_dssp -CEECCSTTCCCEESSHHHHH---HHHGGG--SCC-CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCS--TTCCCEES
T ss_pred CcccCCCCCCcCccCCHHHHH---HHHHHc--CCC-CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCC--CCCcCccC
Confidence 457788 7888877542 21 121100 111 2468899887764333221111 1123456653 25877765
Q ss_pred cc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 133 YY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 133 ~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
.. .+..|+.. -.-+++.||.. .|+... ....|..|++..+.
T Consensus 76 ~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~H~~ 119 (124)
T 1ubd_C 76 LDFNLRTHVRIHTGDRPYVCPFD--GCNKKFAQSTNLKSHILTHAK 119 (124)
T ss_dssp CHHHHHHHHHHHHCCCCCCCCST--TCCCCCSSTTTTHHHHHHHC-
T ss_pred CHHHHHHHHHHhCCCCceECCCC--CCCCccCCHHHHHHHHHHHcc
Confidence 53 56677643 23467888753 276655 34578888876443
No 155
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.26 E-value=56 Score=24.82 Aligned_cols=45 Identities=27% Similarity=0.546 Sum_probs=25.8
Q ss_pred CCCCeeeecccccccccccccccC---C-ceecccccc--cc---cCCCCCcccc
Q 020563 55 SVHELLECPVCTNSMYPPIHQCHN---G-HTLCSTCKT--RV---HNRCPTCRQE 100 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi~qC~~---G-H~~C~~C~~--~~---~~~CP~Cr~~ 100 (324)
+..+...| +|..+....+++|.+ . ..|=..|+. .. .-.||.|+..
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 34566778 999987666677754 1 122233442 11 1358988764
No 156
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=39.01 E-value=26 Score=26.75 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=38.9
Q ss_pred hhccccCCCCCCCCCcccCcc-chhhhhcccCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 020563 114 ESLELPCKYMSLGCPEIFPYY-SKLKHEAICNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHKV 176 (324)
Q Consensus 114 ~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 176 (324)
..-.+.|.. |+..+... .+..|+..= -+|+.|+. |+... ....|..|++..|.+
T Consensus 71 ~~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 71 AISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNI 126 (129)
T ss_dssp HHCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCC
T ss_pred CCCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCc
Confidence 345677876 88776654 567787653 57889986 76655 456899999988876
No 157
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.72 E-value=19 Score=24.55 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 127 CPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|...+... .+..|+.. -.-+|+.|+. |+... ....|..|++..+.
T Consensus 20 C~k~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE----CGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp SCCEESSHHHHHHHHHGGGCSCCEECSS----SCCEESSHHHHHHHHHHHHS
T ss_pred CCCccCCHHHHHHHHHhcCCCCCeECCC----CCcccCCHHHHHHHHHhcCC
Confidence 55544332 34555542 2246788886 76655 45689999876443
No 158
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.36 E-value=15 Score=29.58 Aligned_cols=32 Identities=25% Similarity=0.840 Sum_probs=23.6
Q ss_pred Ceeeeccccccccccc--cccc-CCceeccccccc
Q 020563 58 ELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
+.-.|.+|...|..-. ..|. +|++||+.|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4557999999987433 3453 399999999765
No 159
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.04 E-value=39 Score=23.14 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=22.4
Q ss_pred chhhhhccc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 135 SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 135 ~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
.+..|+..- .-+|+.|+. |+... ....|..|++..+.
T Consensus 33 ~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 33 DLSKHRRTHTGEKPYKCDE----CGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp HHHHHHTTTCCSCSEECSS----SCCEESSHHHHHHHGGGSCC
T ss_pred HHHHHHHHcCCCcCeeCCC----CCCccCCHHHHHHHHHHhCC
Confidence 344554421 236788886 76655 45689999875443
No 160
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=37.20 E-value=17 Score=25.50 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhh
Q 020563 126 GCPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLR 171 (324)
Q Consensus 126 GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~ 171 (324)
+|+..+... .+..|... -.-+++.|+. |+... ....|..|++
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~ 86 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQK----CDRAFSRSDHLALHMK 86 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHGG
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCC----CCcccCCHHHHHHHHH
Confidence 466554432 34555432 2335677775 65544 3457777765
No 161
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.68 E-value=13 Score=25.84 Aligned_cols=34 Identities=15% Similarity=0.456 Sum_probs=23.6
Q ss_pred CCeeeecccccccccccccccCCceecccccccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
.+-|.|..|...|....+.-.+|.++|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 3557788888888654443446888888887654
No 162
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=36.63 E-value=34 Score=27.95 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=9.4
Q ss_pred eeee--cccccccccc
Q 020563 59 LLEC--PVCTNSMYPP 72 (324)
Q Consensus 59 ~L~C--pIC~~~l~~P 72 (324)
.+.| ++|...+...
T Consensus 42 ~~~C~~~~C~~~f~~~ 57 (190)
T 1tf6_A 42 PFPCKEEGCEKGFTSL 57 (190)
T ss_dssp SSCCSSTTCCCCCSSH
T ss_pred CccCCCCCCChhhCCH
Confidence 4677 7787777643
No 163
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.15 E-value=14 Score=34.50 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=30.3
Q ss_pred CCeeeeccccccccccccc---ccCC--ceeccccccccc---CCCCCcccc
Q 020563 57 HELLECPVCTNSMYPPIHQ---CHNG--HTLCSTCKTRVH---NRCPTCRQE 100 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~q---C~~G--H~~C~~C~~~~~---~~CP~Cr~~ 100 (324)
...-.||||.....--++. =..| +..|+-|-..|. .+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4456799999976644432 1246 589999988873 689999664
No 164
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=36.04 E-value=11 Score=29.14 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=38.4
Q ss_pred CCcCCCCeeeecccccccccccccccCCceecccccccc---cCCCCCcccccCc
Q 020563 52 GTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 103 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~---~~~CP~Cr~~~~~ 103 (324)
....+..-+.|..|--..+. .+.|. .|-+|..|+..+ .+.||+|..++..
T Consensus 21 ~d~s~~G~~nCKsCWf~~k~-LV~C~-dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENKG-LVECN-NHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCSS-EEECS-SCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CCccccCcccChhhccccCC-eeeec-chhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 34566778889999877664 34684 799999999865 4789999998753
No 165
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.99 E-value=85 Score=23.64 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=29.8
Q ss_pred Ceeeeccccccccc-ccccccCCceecccccccccCCCCCccc
Q 020563 58 ELLECPVCTNSMYP-PIHQCHNGHTLCSTCKTRVHNRCPTCRQ 99 (324)
Q Consensus 58 ~~L~CpIC~~~l~~-Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~ 99 (324)
..-.|..|..-+.- --++|.+|..||+.=+-.-...|+..-.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred cCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhh
Confidence 34579999986554 2378888999999877544467876433
No 166
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=35.95 E-value=25 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.592 Sum_probs=21.5
Q ss_pred cCCCCeeeecccccccccccccccCCceecccccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 88 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~ 88 (324)
+..+|...|+-|. -+.+| -+.+|.+|..
T Consensus 6 ~~~eD~WkC~~C~-k~N~P------l~ryC~rCwa 33 (53)
T 2cr8_A 6 SGSEDEWQCTECK-KFNSP------SKRYCFRCWA 33 (53)
T ss_dssp SCCSCCEECSSSC-CEECS------SCCBCTTTCC
T ss_pred CCCcceeeccccc-ccCCC------ccchhHHHHH
Confidence 4567899999999 56777 3567888875
No 167
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.34 E-value=14 Score=25.84 Aligned_cols=34 Identities=18% Similarity=0.481 Sum_probs=24.8
Q ss_pred CCeeeecccccccccccccccCCceecccccccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
.+-|.|..|...|....+.=.+|.++|..|..++
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 3558899999888754443356889999988764
No 168
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.23 E-value=33 Score=24.76 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=30.7
Q ss_pred Ceeeeccccccccccc---ccccCCceecccccccccCCCCCccc
Q 020563 58 ELLECPVCTNSMYPPI---HQCHNGHTLCSTCKTRVHNRCPTCRQ 99 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi---~qC~~GH~~C~~C~~~~~~~CP~Cr~ 99 (324)
..-.|..|..-+.-+- +.|.+|.+||+.=+-.-...|+..-.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk 58 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHM 58 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSS
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhccCCccccCCccccc
Confidence 3457999999888763 78988999999776543456766533
No 169
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.66 E-value=21 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.636 Sum_probs=21.4
Q ss_pred eeccccccccccc--cccc-CCceeccccccc
Q 020563 61 ECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 61 ~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
.|.+|...|..-. ..|. +|.+||+.|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 7999999887432 3443 299999999754
No 170
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.50 E-value=31 Score=23.59 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCcccCcc-chhhhhc-cc-CCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 126 GCPEIFPYY-SKLKHEA-IC-NFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 126 GC~~~~~~~-~~~~He~-~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
+|+..+... .|..|+. .- .-+++.|+.++ |+..- ....|..|++..+.
T Consensus 14 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA--CGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp TTCCEESSHHHHHHHHHHGGGSCCCEECSCTT--TCCEESSHHHHHHHHHHHHT
T ss_pred CCcCccCCHHHHHHHHHHHhCCCCCeECCCCC--CcCccCCHHHHHHHHHHhCC
Confidence 466655443 4556654 22 34677887643 66654 35578888775443
No 171
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.25 E-value=26 Score=21.64 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=18.0
Q ss_pred CccCCCCCCCCCcccc-ChhHHHHHhhh
Q 020563 146 RPYNCPYAGSECSIVG-DIPFLVAHLRD 172 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 172 (324)
+|+.|+..+ |++.. ....|..|++.
T Consensus 8 kp~~C~~~~--C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDG--CDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSS--CCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCC--CCCccCCHHHHHHHHHh
Confidence 688898643 87765 45689999764
No 172
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=32.55 E-value=15 Score=23.34 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=19.1
Q ss_pred cccCCCCCCCCCcccCccchhhhhcccCC
Q 020563 117 ELPCKYMSLGCPEIFPYYSKLKHEAICNF 145 (324)
Q Consensus 117 ~v~C~~~~~GC~~~~~~~~~~~He~~C~f 145 (324)
.+.||| .....++..++..|...|.-
T Consensus 5 ~v~CPy---d~~H~i~~~~l~~Hl~kC~~ 30 (37)
T 2vy4_A 5 VVICPY---DSNHHMPKSSLAKHMASCRL 30 (37)
T ss_dssp CEECTT---TSSCEECGGGHHHHHHHHHH
T ss_pred EEECCC---CCCeEeCHHHHHHHHHHHhh
Confidence 467876 46777888888888877754
No 173
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.54 E-value=20 Score=34.28 Aligned_cols=56 Identities=20% Similarity=0.436 Sum_probs=38.2
Q ss_pred eeeeccccccccccc--ccccCCceecccccccc-------cCCCCCcccccCc---ccchHHHHHhhhc
Q 020563 59 LLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV-------HNRCPTCRQELGD---IRCLALEKVAESL 116 (324)
Q Consensus 59 ~L~CpIC~~~l~~Pi--~qC~~GH~~C~~C~~~~-------~~~CP~Cr~~~~~---~rn~ale~~l~~l 116 (324)
-|.||+=+..|..|+ ..| -|+-|-+-..-+ .-.||+|...+.. .-+..+.+++..+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C--~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINC--KHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTC--CSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcC--CCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 478999999999998 467 898765542111 1479999987753 3455566666543
No 174
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.50 E-value=45 Score=23.95 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=25.3
Q ss_pred cCCCCeeeecccccccccccccccC---C-ceeccccccc--c---cCCCCCccccc
Q 020563 54 TSVHELLECPVCTNSMYPPIHQCHN---G-HTLCSTCKTR--V---HNRCPTCRQEL 101 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~~Pi~qC~~---G-H~~C~~C~~~--~---~~~CP~Cr~~~ 101 (324)
.+..+...| +|..+-...+++|.+ . ..|=..|+.- . .-.||.|+...
T Consensus 11 ~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 334456678 898876555666653 1 1233344431 1 13588887643
No 175
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.25 E-value=39 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=20.1
Q ss_pred CccCCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 020563 146 RPYNCPYAGSECSIVG-DIPFLVAHLRDDHKVD 177 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 177 (324)
+++.|+. |+... ....|..|++..|...
T Consensus 46 ~~~~C~~----C~~~f~~~~~L~~H~~~h~~~~ 74 (86)
T 1x6h_A 46 AAFVCSK----CGKTFTRRNTMARHADNCAGPD 74 (86)
T ss_dssp CCEECSS----SCCEESCHHHHHHHHHHCCCCC
T ss_pred cceECCC----CCChhCCHHHHHHHHHHccCCC
Confidence 5678875 76655 4568999988877654
No 176
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.51 E-value=1.1e+02 Score=23.12 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=4.5
Q ss_pred Ceeeeccccc
Q 020563 58 ELLECPVCTN 67 (324)
Q Consensus 58 ~~L~CpIC~~ 67 (324)
++|.|.-|-.
T Consensus 36 ~LL~CD~C~~ 45 (88)
T 1fp0_A 36 DLVMCNQCEF 45 (88)
T ss_dssp CCEECTTSSC
T ss_pred CEEECCCCCC
Confidence 3444554433
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.87 E-value=13 Score=26.76 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCeeeecccccccccccccccCCceecccccccc-cCCCCCcc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCR 98 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~-~~~CP~Cr 98 (324)
.+=|.|..|...|..-.+.-.+|.++|..|..++ ..+|-.|.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 32 RCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-------
T ss_pred cccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 3557788888888654333346888888888764 34555554
No 178
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.84 E-value=35 Score=25.59 Aligned_cols=33 Identities=27% Similarity=0.642 Sum_probs=23.6
Q ss_pred CCeeeeccccccccccc--cccc-CCceeccccccc
Q 020563 57 HELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
.+.-.|.+|...|..-. ..|. +|.+||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 34567999999887322 3443 299999999865
No 179
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.66 E-value=52 Score=22.26 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=25.8
Q ss_pred CCcccCcc-chhhhhcc-cCCCccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 127 CPEIFPYY-SKLKHEAI-CNFRPYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 127 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|...+... .+..|+.. -.-+++.|+. |+... ....|..|++..+.
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCNI----CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECTT----TCCEESCHHHHHHHHHHHCC
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECCC----CCchhCCHHHHHHHHHhcCC
Confidence 55444332 34455432 1236788886 76655 45689999875443
No 180
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.50 E-value=27 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.561 Sum_probs=25.2
Q ss_pred CCeeeecccccccccccccccCCceecccccccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
.+=|.|..|...|..-.+.-.+|.++|..|..++
T Consensus 41 ~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 41 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred ccCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 3568899999988754443446889999998764
No 181
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=29.44 E-value=20 Score=30.35 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=8.3
Q ss_pred eeeeccccccccc
Q 020563 59 LLECPVCTNSMYP 71 (324)
Q Consensus 59 ~L~CpIC~~~l~~ 71 (324)
.-.|..|.+.+.+
T Consensus 115 ~~~C~~C~~~I~~ 127 (192)
T 1b8t_A 115 SDGCPRCGQAVYA 127 (192)
T ss_dssp CEECTTTSCEECS
T ss_pred CCcCCCCCCEecC
Confidence 3457777776653
No 182
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.95 E-value=21 Score=26.18 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=16.2
Q ss_pred CeeeecccccccccccccccCCceeccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
+-|.|..|...|..-.+.=.+|.++|..|..+
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 34556666665553322223456666666544
No 183
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.63 E-value=20 Score=25.34 Aligned_cols=32 Identities=28% Similarity=0.708 Sum_probs=18.4
Q ss_pred CeeeecccccccccccccccCCceecc-ccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCS-TCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~-~C~~~ 89 (324)
+-|.|..|...|..-.+.=.+|.++|. .|..+
T Consensus 35 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 35 FCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp TTCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 346677777776643322234667777 57654
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.59 E-value=19 Score=24.95 Aligned_cols=33 Identities=12% Similarity=0.409 Sum_probs=21.2
Q ss_pred CeeeecccccccccccccccCCceecccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+-|.|..|...|....+.=.+|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 456778888777644332345778888777654
No 185
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=28.13 E-value=15 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.470 Sum_probs=17.7
Q ss_pred CeeeecccccccccccccccCCceecccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 88 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~ 88 (324)
+=|.|..|...|....+.=.+|.++|..|..
T Consensus 45 ~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 45 YCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp TTCBCSSSCCBCTTSCCCEETTEECCHHHHH
T ss_pred ccCEehhcCCCCCCCccEeECCEEEChHHhc
Confidence 3466777777666433323346677766654
No 186
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=27.91 E-value=33 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.888 Sum_probs=20.4
Q ss_pred ccCCCCCCCCCccccC-hhHHHHHhhhcC
Q 020563 147 PYNCPYAGSECSIVGD-IPFLVAHLRDDH 174 (324)
Q Consensus 147 p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H 174 (324)
++.|... +|++.+. ...|..|++.+|
T Consensus 38 ~~~C~W~--~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 38 PLACNWE--DCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CEECCCS--SCCCEESSHHHHHHHHHHHC
T ss_pred CCEeeCC--CCcCCCCChHHHHhhccccC
Confidence 6788875 4888764 568999999887
No 187
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.59 E-value=15 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=20.1
Q ss_pred CeeeecccccccccccccccCCceeccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
+-|.|..|...|....+.=..|.++|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 30 EHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 45677777777765433334577777777654
No 188
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.43 E-value=29 Score=27.81 Aligned_cols=42 Identities=21% Similarity=0.563 Sum_probs=26.6
Q ss_pred Ceeeeccccccccccc--cccc-CCceecccccccc---cCCCCCccc
Q 020563 58 ELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTRV---HNRCPTCRQ 99 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~~---~~~CP~Cr~ 99 (324)
+.-.|..|...|..-. ..|. +|.+||+.|..+. ...|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 3357999999887532 3443 3999999998653 134555543
No 189
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.06 E-value=16 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.383 Sum_probs=20.7
Q ss_pred CeeeecccccccccccccccCCceecccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+-|.|..|...|..-.+.-.+|.++|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 32 TCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred cCCcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 446777777777654333345777777777553
No 190
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.82 E-value=19 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=22.0
Q ss_pred CeeeecccccccccccccccCCceecccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+-|.|..|...|....+.=.+|.++|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 457788888877754333345788888887654
No 191
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.81 E-value=29 Score=30.22 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=22.9
Q ss_pred eeeeccccccccccc--cccc-CCceeccccccc
Q 020563 59 LLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 59 ~L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
.-.|.+|...|..-. ..|. +|++||+.|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 358999999887432 3453 399999999764
No 192
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=26.62 E-value=31 Score=32.88 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=37.8
Q ss_pred eeeeccccccccccc--ccccCCceecccccccc-------cCCCCCcccccCc---ccchHHHHHhhh
Q 020563 59 LLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV-------HNRCPTCRQELGD---IRCLALEKVAES 115 (324)
Q Consensus 59 ~L~CpIC~~~l~~Pi--~qC~~GH~~C~~C~~~~-------~~~CP~Cr~~~~~---~rn~ale~~l~~ 115 (324)
-|.||+=...+..|+ ..| -|+-|-+-..-+ .-.||+|.+.+.. .-+..+.+++.+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C--~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTC--THLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTC--CCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCC--CCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 578999999999998 467 898765543211 1479999998753 345556666654
No 193
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=26.60 E-value=29 Score=26.82 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.4
Q ss_pred cCCCCeeeecccccccc
Q 020563 54 TSVHELLECPVCTNSMY 70 (324)
Q Consensus 54 ~~l~~~L~CpIC~~~l~ 70 (324)
..+.+.|-||+|...|.
T Consensus 3 ~~LLdILaCP~cK~pL~ 19 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLS 19 (97)
T ss_dssp TTTCSSCCCCTTSSCCE
T ss_pred hHHhhheECCCCCCccc
Confidence 46789999999998776
No 194
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.68 E-value=16 Score=25.30 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=19.2
Q ss_pred CeeeecccccccccccccccCCceeccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 89 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~ 89 (324)
+-|.|..|...|..-.+.=..|.++|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 44667777777665433223467777777654
No 195
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.21 E-value=21 Score=24.57 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=20.9
Q ss_pred CCeeeecccccccccccccccCCceec-cccccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLC-STCKTR 89 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C-~~C~~~ 89 (324)
.+=|.|..|...|..-.+.=..|.++| .+|..+
T Consensus 30 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp TTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred CCCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 355778888877764433234477888 777654
No 196
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=31 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=19.7
Q ss_pred Cceecccccccc-cCCCCCcccccC
Q 020563 79 GHTLCSTCKTRV-HNRCPTCRQELG 102 (324)
Q Consensus 79 GH~~C~~C~~~~-~~~CP~Cr~~~~ 102 (324)
|.++|..|..+. ...|+.|..++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 778999998875 478999988875
No 197
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=24.42 E-value=64 Score=24.02 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=48.0
Q ss_pred CCCC--CcccccCcccchHHHHHh-hhccccCCCCCCCCCcccCcc-chhhhhccc-CCCccCCCCCCCCCcccc-ChhH
Q 020563 92 NRCP--TCRQELGDIRCLALEKVA-ESLELPCKYMSLGCPEIFPYY-SKLKHEAIC-NFRPYNCPYAGSECSIVG-DIPF 165 (324)
Q Consensus 92 ~~CP--~Cr~~~~~~rn~ale~~l-~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~ 165 (324)
-.|| .|...+.....+..-... ..-.+.|+. |+..+... .+..|+..- .-+++.|+.. .|+... ....
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~ 79 (124)
T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAE----CGKAFVESSKLKRHQLVHTGEKPFQCTFE--GCGKRFSLDFN 79 (124)
T ss_dssp EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTT----TCCEESSHHHHHHHGGGTSCCCCEECCST--TCCCEESCHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCC----CCchhCCHHHHHHHHHHcCCCCCeeCCCC--CCcCccCCHHH
Confidence 3588 798877543332211111 234466765 88776554 577887643 3467889853 377655 4568
Q ss_pred HHHHhhhcCCC
Q 020563 166 LVAHLRDDHKV 176 (324)
Q Consensus 166 L~~Hl~~~H~~ 176 (324)
|..|++..+..
T Consensus 80 l~~H~~~h~~~ 90 (124)
T 1ubd_C 80 LRTHVRIHTGD 90 (124)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 99998765544
No 198
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=24.15 E-value=71 Score=17.16 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred CccCCCCCCCCCcccc-ChhHHHHHhhh
Q 020563 146 RPYNCPYAGSECSIVG-DIPFLVAHLRD 172 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 172 (324)
+|+.|+.. .|+..- ....|..|++.
T Consensus 1 kp~~C~~~--~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 1 RPFMCTWS--YCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCCBCCST--TCCCBCSSHHHHHHHHTT
T ss_pred CCcCCcCC--CCCcccCCHhHHHHHHHH
Confidence 36778632 277655 35688888764
No 199
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.84 E-value=32 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=19.9
Q ss_pred CCceecccccccccCCCCCcccccC
Q 020563 78 NGHTLCSTCKTRVHNRCPTCRQELG 102 (324)
Q Consensus 78 ~GH~~C~~C~~~~~~~CP~Cr~~~~ 102 (324)
.|..+|..|..+....|+.|..++.
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec
Confidence 4778999998755578999988875
No 200
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.06 E-value=25 Score=24.85 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=24.1
Q ss_pred CCeeeecccccccc-cccccccCCceecccccccc
Q 020563 57 HELLECPVCTNSMY-PPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 57 ~~~L~CpIC~~~l~-~Pi~qC~~GH~~C~~C~~~~ 90 (324)
.+-|.|..|...|. ...+.=..|.++|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 45688999999987 33332235889999998764
No 201
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.99 E-value=51 Score=30.99 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=28.2
Q ss_pred CCCCeeeeccccccccccc---cccc-CCceeccccccccc
Q 020563 55 SVHELLECPVCTNSMYPPI---HQCH-NGHTLCSTCKTRVH 91 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi---~qC~-~GH~~C~~C~~~~~ 91 (324)
.....-.|..|...+..-. ++|. ||..+|+.|..++.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 3455667999999997433 5675 59999999998874
No 202
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.80 E-value=51 Score=17.42 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=15.9
Q ss_pred ccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 147 PYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 147 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|+.|+. |+... ....|..|+...|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACGL----CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCTT----TCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCcc----cCcccCChHHHHHHHHHHcc
Confidence 567775 65544 34688899655554
No 203
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.77 E-value=31 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.548 Sum_probs=21.2
Q ss_pred CeeeecccccccccccccccCCceecccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+-|.|..|...|..-.+ =..|.++|..|..+.
T Consensus 40 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 40 DHFNCANCGKELTADAR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp TTSBCSSSCCBCCTTCE-EETTEEECHHHHHTT
T ss_pred CCCEeCCCCCccCCCCE-eECCEEeCHHHHHHh
Confidence 45778888777764433 235778888877654
No 204
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.52 E-value=23 Score=29.98 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=32.6
Q ss_pred CCeeeecccccccccccccccCCceecccccccc-cCCCCCcccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQE 100 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~-~~~CP~Cr~~ 100 (324)
.+-|.|..|...|....+.-..|.++|..|..++ ..+|..|...
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc
Confidence 4678899999999865444456999999998765 4567666543
No 205
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.06 E-value=23 Score=24.95 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=18.9
Q ss_pred CeeeecccccccccccccccCCceecccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+=|.|..|...|..-.+.-..|.++|..|..+.
T Consensus 38 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 38 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp TTCCCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred ccCeECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 346677777766643232334667777776543
No 206
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.90 E-value=59 Score=16.93 Aligned_cols=25 Identities=32% Similarity=0.800 Sum_probs=16.0
Q ss_pred ccCCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 020563 147 PYNCPYAGSECSIVG-DIPFLVAHLRDDHK 175 (324)
Q Consensus 147 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 175 (324)
|+.|+. |+... ....|..|.+..|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY----CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS----SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC----CCCccCCHHHHHHHHHHHcc
Confidence 567765 65543 34688889876553
No 207
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=21.82 E-value=24 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=18.6
Q ss_pred ccCccchhhhhcccCCCccCCCC
Q 020563 130 IFPYYSKLKHEAICNFRPYNCPY 152 (324)
Q Consensus 130 ~~~~~~~~~He~~C~f~p~~CP~ 152 (324)
......++.|...|+|+.+.|..
T Consensus 16 HG~~~~lKGHKr~C~~r~C~C~k 38 (52)
T 1lpv_A 16 HGLKITLKGHKRYCKFRYCTCEK 38 (52)
T ss_dssp TTCCCTTTTCGGGCTTTTCCSHH
T ss_pred CCCccccCCccCccCCCCCcCCC
Confidence 33456788999999999999974
No 208
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.79 E-value=71 Score=16.52 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=15.4
Q ss_pred CccCCCCCCCCCcccc-ChhHHHHHhhhc
Q 020563 146 RPYNCPYAGSECSIVG-DIPFLVAHLRDD 173 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 173 (324)
+|+.|+. |+... ....|..|.+..
T Consensus 1 k~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 1 RSFVCEV----CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCCBCTT----TCCBCSSHHHHHHHHHHH
T ss_pred CCeECCC----CCcccCCHHHHHHHHHHh
Confidence 3667775 65544 346888887753
No 209
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.70 E-value=45 Score=24.01 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=15.4
Q ss_pred eeeecccccccccccccc--cCCceeccccccc
Q 020563 59 LLECPVCTNSMYPPIHQC--HNGHTLCSTCKTR 89 (324)
Q Consensus 59 ~L~CpIC~~~l~~Pi~qC--~~GH~~C~~C~~~ 89 (324)
=|.|..|...|..-.+.. ..|.++|..|..+
T Consensus 42 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 42 CFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp TCBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred cCEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence 355666665555433221 2355666666544
No 210
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.65 E-value=38 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=20.9
Q ss_pred CeeeecccccccccccccccCCceecccccccc
Q 020563 58 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 58 ~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+=|.|..|...|....+.=.+|.++|..|..++
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 456777887777653332345777887776553
No 211
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.62 E-value=42 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.731 Sum_probs=22.1
Q ss_pred eeeccccccccccc--cccc-CCceeccccccc
Q 020563 60 LECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 89 (324)
Q Consensus 60 L~CpIC~~~l~~Pi--~qC~-~GH~~C~~C~~~ 89 (324)
-.|.+|...|..-. ..|. +|.+||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 37999999887432 3453 399999999764
No 212
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.40 E-value=45 Score=28.09 Aligned_cols=28 Identities=21% Similarity=0.672 Sum_probs=18.6
Q ss_pred CCeeeecccccccccccccccCCceecccccccccCCCCCccccc
Q 020563 57 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQEL 101 (324)
Q Consensus 57 ~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~~~ 101 (324)
...+.|++|..+... .....||+|..+-
T Consensus 136 ~~~~~C~~CG~i~~~-----------------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 136 KKVYICPICGYTAVD-----------------EAPEYCPVCGAPK 163 (170)
T ss_dssp SCEEECTTTCCEEES-----------------CCCSBCTTTCCBG
T ss_pred CCeeEeCCCCCeeCC-----------------CCCCCCCCCCCCH
Confidence 467888888776542 2235799997653
No 213
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.22 E-value=27 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=6.9
Q ss_pred CCcccCccchhhhhcc
Q 020563 127 CPEIFPYYSKLKHEAI 142 (324)
Q Consensus 127 C~~~~~~~~~~~He~~ 142 (324)
|...++-..+..|.+.
T Consensus 12 cqq~mpaahin~hldr 27 (29)
T 3vhs_A 12 CQQMMPAAHINSHLDR 27 (29)
T ss_dssp TCCEEEGGGHHHHHHH
T ss_pred HHHhCcHHHHHHHHhc
Confidence 4444444444444443
No 214
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.80 E-value=43 Score=24.12 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCCCeeeecccccccccccccccCCceecccccccc
Q 020563 55 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 90 (324)
Q Consensus 55 ~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~ 90 (324)
+.+++--|-||.+-..--=..|. |-+||.+|+...
T Consensus 4 ~~ee~pWC~ICneDAtlrC~gCd-gDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDATLRCAGCD-GDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCCCEEETTTT-SEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCCeEEecCCC-CceehHHHHHHH
Confidence 44566779999987442113443 789999999764
No 215
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.51 E-value=99 Score=16.59 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=15.6
Q ss_pred CccCCCCCCCCCcccc-ChhHHHHHhhh
Q 020563 146 RPYNCPYAGSECSIVG-DIPFLVAHLRD 172 (324)
Q Consensus 146 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 172 (324)
+|+.|+.+ .|+... ....|..|++.
T Consensus 2 k~~~C~~~--~C~k~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHP--GCDKAFVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCT--TCCCCBSSSHHHHHHHGG
T ss_pred CCCcCcCC--CCCCccCCHHHHHHHHHH
Confidence 46777742 266544 34688888765
No 216
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=20.07 E-value=41 Score=22.47 Aligned_cols=30 Identities=27% Similarity=0.666 Sum_probs=21.3
Q ss_pred CCcCCCCeeeecccccccccccccccCCceecccccc
Q 020563 52 GTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 88 (324)
Q Consensus 52 ~~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~ 88 (324)
++.++.+...|+-|. -+.+| -+.+|.+|..
T Consensus 6 ~di~~~D~WkC~~C~-~~N~P------l~r~C~rCw~ 35 (46)
T 2c6a_A 6 PEISLADYWKCTSCN-EMNPP------LPSHCNRCWA 35 (46)
T ss_dssp SSSCGGGCEECTTTC-CEECS------SCSSCTTTCC
T ss_pred CccCccceEeccccc-ccCCC------ccchhhHHHh
Confidence 344566899999999 57777 3456777764
Done!