BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020564
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z60|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Human
           Tfiih P44 Subunit
          Length = 59

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 5/46 (10%)

Query: 265 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 310
           C+GCQ  L        +YV C  C+  FC++CD+++H+SLH+CPGC
Sbjct: 18  CYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHSCPGC 58


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 274 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHN 306
           SSG KP  YV C +C K F L+  + IHE +H 
Sbjct: 5   SSGQKP--YV-CNECGKAFGLKSQLIIHERIHT 34


>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 3)
 pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 3)
 pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 3)
 pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 2)
 pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 2)
 pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 2)
 pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 1)
 pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 1)
 pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
           Atm 1)
          Length = 697

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 183 RAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS-YHHLF 241
           +  + S+SI  C++ +  GVG  C      V  +P DC        S   LA++ Y  LF
Sbjct: 310 KTDQQSLSIALCYRSISTGVGKRC-----EVISVPMDCNQAAY---SRDALAKALYERLF 361


>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
          Length = 149

 Score = 28.1 bits (61), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 9   AVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG---CS 65
           A VA+  +A    F D NPLS+  ++ +    A+CL +LG    + +  L+ K       
Sbjct: 26  AKVAETSKALA--FMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAG 83

Query: 66  GDSSLQNALDLVQGLLSQIPSYGHREV 92
            D S+Q        +L    S  H+EV
Sbjct: 84  PDGSMQ------YNVLQNNGSLAHQEV 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,415,693
Number of Sequences: 62578
Number of extensions: 354948
Number of successful extensions: 750
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 11
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)