BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020564
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86KZ2|TF2H2_DICDI General transcription factor IIH subunit 2 OS=Dictyostelium
discoideum GN=gtf2h2 PE=3 SV=2
Length = 461
Score = 300 bits (767), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 204/313 (65%), Gaps = 13/313 (4%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 61
D +PSR V+ + VE F++EFFDQNP+SQ+ ++ K+ A +++L G+ HI+A+
Sbjct: 113 DLKPSRYQVLLQNVELFIKEFFDQNPISQLSIIITKNSKAEKISELSGNRLRHIQAMKDA 172
Query: 62 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 121
+ G+ S+QN+L++ L +P YG REVL ++S+L+TCDP + +TIQ K IR
Sbjct: 173 IAMEGEPSIQNSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSSLQKTIQSLKNESIRV 232
Query: 122 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 181
S I ++AE++ICK + + T G+ V L+E HF E +M PPP I + A L++MGFP
Sbjct: 233 SFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFP 291
Query: 182 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 241
Q+ S C CH+++K GY CPRC + CELPTDC+IC L LVSSPHLARSYHHLF
Sbjct: 292 QQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLF 350
Query: 242 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLYVACPKCKKHFCLECDIY 299
I F+EV LN TC GC LSS K L+ +CP+C++ FCL+CD++
Sbjct: 351 QIPLFNEVNWKELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLF 401
Query: 300 IHESLHNCPGCES 312
IHESLHNCPGCE+
Sbjct: 402 IHESLHNCPGCEN 414
>sp|Q2TBV5|TF2H2_BOVIN General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2
PE=2 SV=1
Length = 395
Score = 276 bits (706), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/322 (45%), Positives = 204/322 (63%), Gaps = 24/322 (7%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG- 60
D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 75 DLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKA 134
Query: 61 -KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 119
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +KI
Sbjct: 135 VDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKSLKAAKI 194
Query: 120 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMG 179
R S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + + +LI+MG
Sbjct: 195 RVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSN-SECSLIRMG 253
Query: 180 FPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLV 228
FPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL LV
Sbjct: 254 FPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLV 313
Query: 229 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 288
S+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L +YV C C
Sbjct: 314 SAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL----KDQHVYV-CSVC 363
Query: 289 KKHFCLECDIYIHESLHNCPGC 310
+ FC++CD+++H+SLH CPGC
Sbjct: 364 QNVFCVDCDVFVHDSLHCCPGC 385
>sp|A0JN27|TF2H2_RAT General transcription factor IIH subunit 2 OS=Rattus norvegicus
GN=Gtf2h2 PE=2 SV=1
Length = 396
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 204/324 (62%), Gaps = 27/324 (8%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG- 60
D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 75 DLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKA 134
Query: 61 -KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 119
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +KI
Sbjct: 135 VDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKTAKI 194
Query: 120 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMG 179
R SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + + +LI+MG
Sbjct: 195 RVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA-SSGSECSLIRMG 253
Query: 180 FPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 226
FPQ + S S+ S + +G GY CP+C+A+ CELP +C+ICGL
Sbjct: 254 FPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVECKICGLT 312
Query: 227 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 286
LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L +YV C
Sbjct: 313 LVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL----KDQHVYV-CT 362
Query: 287 KCKKHFCLECDIYIHESLHNCPGC 310
C+ FC++CD+++H+SLH CPGC
Sbjct: 363 VCRNVFCVDCDVFVHDSLHCCPGC 386
>sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSL1 PE=1 SV=1
Length = 461
Score = 270 bits (691), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 198/323 (61%), Gaps = 18/323 (5%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--M 59
D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G+P+ HI AL +
Sbjct: 140 DLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSI 199
Query: 60 GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 119
K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI +TI KI
Sbjct: 200 RKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKI 259
Query: 120 RCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAEFAIANL 175
R V+GLSA++ ICK LC+ T Y + LDE+H KEL E P P L
Sbjct: 260 RVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTL 319
Query: 176 IKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 235
+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C L L+ S HLAR
Sbjct: 320 VKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLAR 378
Query: 236 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLYVA-----CPKCK 289
SYHHL P+ F EV + RS CF CQ + +K G + C CK
Sbjct: 379 SYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKLLTSSRYRCEDCK 433
Query: 290 KHFCLECDIYIHESLHNCPGCES 312
+ FC++CD++IHE LHNCPGCES
Sbjct: 434 QEFCVDCDVFIHEILHNCPGCES 456
>sp|O74995|TFH47_SCHPO TFIIH basal transcription factor complex p47 subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfh47 PE=1 SV=1
Length = 421
Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 195/321 (60%), Gaps = 17/321 (5%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 61
DF R + K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L
Sbjct: 103 DFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSL 162
Query: 62 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 121
CSG+ SLQNAL++ + LS I S+G REVLI++ ++ + DPGDI +TI IR
Sbjct: 163 RDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRV 222
Query: 122 SVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHA-PPPPAIAEFAIANLI 176
++GL+AE+ ICK +C T S Y V + E HF+EL++E PP A+ A+L+
Sbjct: 223 RIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLV 282
Query: 177 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 236
MGFP + E S+C+CH G G+ CPRCKA+VC LP +C C L L+ S HLARS
Sbjct: 283 MMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARS 341
Query: 237 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP------GLYVACPKCKK 290
YHHLFP+ + E+ P N P++ + CF CQ P + ACP CK
Sbjct: 342 YHHLFPLKNWSEI-PWSAN-PKS---THCFACQLPFPKPPVSPFDESTSSMRYACPSCKN 396
Query: 291 HFCLECDIYIHESLHNCPGCE 311
HFCL+CD++ HE LH C GC+
Sbjct: 397 HFCLDCDVFAHEQLHECYGCQ 417
>sp|Q13888|TF2H2_HUMAN General transcription factor IIH subunit 2 OS=Homo sapiens
GN=GTF2H2 PE=1 SV=1
Length = 395
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/322 (45%), Positives = 204/322 (63%), Gaps = 24/322 (7%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG- 60
D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 75 DLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKA 134
Query: 61 -KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 119
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +KI
Sbjct: 135 VDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKI 194
Query: 120 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMG 179
R SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +LI+MG
Sbjct: 195 RVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMG 253
Query: 180 FPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLV 228
FPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL LV
Sbjct: 254 FPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLV 313
Query: 229 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 288
S+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +YV C C
Sbjct: 314 SAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVYV-CAVC 363
Query: 289 KKHFCLECDIYIHESLHNCPGC 310
+ FC++CD+++H+SLH CPGC
Sbjct: 364 QNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q6P1K8|T2H2L_HUMAN General transcription factor IIH subunit 2-like protein OS=Homo
sapiens GN=GTF2H2C PE=2 SV=1
Length = 395
Score = 264 bits (675), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/322 (45%), Positives = 204/322 (63%), Gaps = 24/322 (7%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG- 60
D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 75 DLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKEA 134
Query: 61 -KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 119
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +KI
Sbjct: 135 VDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKI 194
Query: 120 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMG 179
R SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +LI+MG
Sbjct: 195 RVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSE-CSLIRMG 253
Query: 180 FPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLV 228
FPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL LV
Sbjct: 254 FPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLV 313
Query: 229 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 288
S+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +YV C C
Sbjct: 314 SAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVYV-CAVC 363
Query: 289 KKHFCLECDIYIHESLHNCPGC 310
+ FC++CD+++H+SLH CPGC
Sbjct: 364 QNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q9JIB4|TF2H2_MOUSE General transcription factor IIH subunit 2 OS=Mus musculus
GN=Gtf2h2 PE=1 SV=1
Length = 396
Score = 261 bits (668), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 202/324 (62%), Gaps = 27/324 (8%)
Query: 2 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG- 60
D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 75 DLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKA 134
Query: 61 -KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 119
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +KI
Sbjct: 135 VDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKTAKI 194
Query: 120 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMG 179
R SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + +LI+MG
Sbjct: 195 RVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSSSE-CSLIRMG 253
Query: 180 FPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 226
FPQ + S S+ S + +G GY CP+C+A+ CELP +C+ICGL
Sbjct: 254 FPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVECKICGLT 312
Query: 227 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 286
LVS+PHLARSYHHLFP+ F E++ + C+GCQ L +YV C
Sbjct: 313 LVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL----KDQHVYV-CT 362
Query: 287 KCKKHFCLECDIYIHESLHNCPGC 310
C+ FC++CD+++H+SLH CPGC
Sbjct: 363 VCQNVFCVDCDVFVHDSLHCCPGC 386
>sp|P34567|TF2H2_CAEEL General transcription factor IIH subunit 2 OS=Caenorhabditis
elegans GN=T16H12.4 PE=3 SV=3
Length = 376
Score = 237 bits (605), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 183/310 (59%), Gaps = 20/310 (6%)
Query: 5 PSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKL 62
PSR VV K ++ F+ FF+QNP++QIGL+T KD A+ LT + G+ ++L + +
Sbjct: 82 PSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADRLTMMTGNIRVLKESLNTLTEA 141
Query: 63 GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCS 122
C GD SLQNAL L L +P + REV+++ SALST DPG+I TI+ K IRCS
Sbjct: 142 FCGGDFSLQNALQLACANLKGMPGHVSREVVLVISALSTIDPGNIYSTIETMKRMNIRCS 201
Query: 123 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQ 182
IGLSAEMF+CK + + T G YSVALD H + L +H PP + A+ + N I +GFP
Sbjct: 202 AIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSS-AKSSECNAIHVGFPH 260
Query: 183 RAGEGSISICSCHKEVK--VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 240
+ S C CH + K G+ C +C AR C +P +C +C L LV++P LAR++ HL
Sbjct: 261 HELITTRSFCVCHPDTKPISSRGFICTQCGARHCSIPAECPVCKLTLVAAPQLARAFRHL 320
Query: 241 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 300
P++ F+++ +R C+ C+ L G + C C+ FCL+CD +
Sbjct: 321 QPLSAFEQI---------EVTRGFCYACETRLSGEGFR------CGSCQLVFCLDCDTLL 365
Query: 301 HESLHNCPGC 310
HESLH CPGC
Sbjct: 366 HESLHVCPGC 375
>sp|Q68H95|REPI1_RAT Replication initiator 1 OS=Rattus norvegicus GN=Repin1 PE=2 SV=1
Length = 548
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 170 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 229
F + +++ Q GE + C K + + E P C CG +
Sbjct: 365 FRLERFLRLHQRQHTGERPFTCTECGKNFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 423
Query: 230 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 289
HLA P PF V P C R++ + + +G KP YV CP C
Sbjct: 424 GSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPDCG 474
Query: 290 KHFCLECDIYIHESLHN------CPGCE 311
K F + ++ H +H CP C+
Sbjct: 475 KAFSQKSNLVSHRRIHTGERPYACPDCD 502
>sp|Q5U4E2|REPI1_MOUSE Replication initiator 1 OS=Mus musculus GN=Repin1 PE=2 SV=1
Length = 545
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 170 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 229
F + +++ Q GE + C K + + E P C CG +
Sbjct: 362 FRLERFLRLHQRQHTGERPFACTECGKNFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 420
Query: 230 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 289
HLA P PF V P C R++ + + +G KP YV CP C
Sbjct: 421 GSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPDCG 471
Query: 290 KHFCLECDIYIHESLHN------CPGCE 311
K F + ++ H +H CP C+
Sbjct: 472 KAFSQKSNLVSHRRIHTGERPYACPDCD 499
>sp|Q0VCC5|REPI1_BOVIN Replication initiator 1 OS=Bos taurus GN=REPIN1 PE=2 SV=1
Length = 559
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 170 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 229
F + ++ Q GE + C K + + E P C CG +
Sbjct: 376 FRLERFLRAHQRQHGGERPFACAECGKHFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 434
Query: 230 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 289
HLA P PF V P C R++ + + +G KP YV CP+C
Sbjct: 435 GSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPECG 485
Query: 290 KHFCLECDIYIHESLHN------CPGCE 311
K F + ++ H +H CP C+
Sbjct: 486 KAFSQKSNLVSHRRIHTGERPYACPDCD 513
>sp|Q9BWE0|REPI1_HUMAN Replication initiator 1 OS=Homo sapiens GN=REPIN1 PE=1 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 16/148 (10%)
Query: 170 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 229
F + ++ Q GE + C K + + E P C CG +
Sbjct: 384 FRLERFLRAHQRQHTGERPFTCAECGKNFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 442
Query: 230 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 289
HLA P PF V P C R++ + + +G KP YV CP C
Sbjct: 443 GSHLAAHRRDHAPDRPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPDCG 493
Query: 290 KHFCLECDIYIHESLHN------CPGCE 311
K F + ++ H +H CP C+
Sbjct: 494 KAFSQKSNLVSHRRIHTGERPYACPDCD 521
>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=1 SV=2
Length = 803
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 209 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 268
CK E P +C CG + HL PF C ++ SR++
Sbjct: 354 CKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFK-----CDACGKSFSRNSHLQS 408
Query: 269 QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLH 305
Q + +G KP C +C K F ++YIH+ +H
Sbjct: 409 HQRV-HTGEKP---YKCEECGKGFICSSNLYIHQRVH 441
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 170 FAIANLIK-MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 228
F NL K + P +A + C CHK+V + +G+ C C + CE C C +
Sbjct: 229 FPDQNLRKHLNTPNQANVDFRATCFCHKKV-LDIGFVCSVCLSIFCEPRVHCSTCHTKFT 287
Query: 229 SSP 231
P
Sbjct: 288 VEP 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,749,501
Number of Sequences: 539616
Number of extensions: 5154747
Number of successful extensions: 14415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 14253
Number of HSP's gapped (non-prelim): 199
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)