BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020565
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 174/342 (50%), Gaps = 38/342 (11%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G ++E+E A YDRQIR+WG +AQ+RL S +L+ G+KG AE KN++LAGV LT++D
Sbjct: 8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
VT E A FLI G+ AE + ++ NPMV V V+ D+ F+
Sbjct: 68 HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124
Query: 123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
+FD +++ C K S + F+T D G F +L H++ ++K +
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182
Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
ET ++ ++ + +EA+ V W +A ++ + YF
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242
Query: 214 LRVLEQFEEAEGRSPGEISI-ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREF 272
L+VL +F +GR P + D +L+++ ++ ++ ++ + + + E
Sbjct: 243 LQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCF---SEM 299
Query: 273 TPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
PVCAVVGGIL QE++KA+S + P NFFFFD M G G+VE
Sbjct: 300 APVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVE 341
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
LY RQ+ V G +A +++S+S++L+ G KG E KN+ LAGV S+TL D + E
Sbjct: 7 GLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDL 66
Query: 72 SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXX 131
S+ + + D+ G A+V L + N V VSV + L E+ F
Sbjct: 67 SSQYFLTEDDI---GVPRAKVTVSKLAELNQYVPVSV----VDELSTEYLKNFKCVVVTE 119
Query: 132 XXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
IN+ K +A+ D R G IF D
Sbjct: 120 TSLTKQLEINDFTHK--NHIAYIAADSRGLFGSIFCDF 155
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 168 DLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALP-----RKASKLYFALRVLEQFEE 222
DL + Y+ + + ++ + S E++ P P + + + A + L F +
Sbjct: 233 DLGSAGYNGVFTQVKVPTKISFKSLRESLKDPEYVYPDFGKMMRPPQYHIAFQALSAFAD 292
Query: 223 A-EGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTR-EFTPVCAVVG 280
A EG P + D + K++ + + + L++ + R + + A +G
Sbjct: 293 AHEGSLPRPRNDIDAAEFFEFCKKIASTLQFDV-ELDEKLIKEISYQARGDLVAMSAFLG 351
Query: 281 GILGQEVIKAISCKGEPLKNFFFFDIMD 308
G + QEV+KA + K PLK +F+FD ++
Sbjct: 352 GAVAQEVLKATTSKFYPLKQYFYFDSLE 379
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 14 YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTE 68
YD QI V+G++ Q +++ + G E KN + GV G +++ D + +
Sbjct: 399 YDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEK 458
Query: 69 EAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP 102
+ FL P + GK +E ++ NP
Sbjct: 459 SNLNRQFLFRPRD---VGKLKSECASTAVSIMNP 489
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 8 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 64
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 65 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 121
Query: 120 FYDKF 124
F+ +F
Sbjct: 122 FFCRF 126
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 210 LYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC---EANALNASHVTDSLLERLI 266
LY LR +++F + +GR PG + + KLK L + L+ D + E
Sbjct: 428 LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCR 487
Query: 267 IGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIM 307
G E + A +GG QEVIK I+ + N + + M
Sbjct: 488 YGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 528
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 7 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 64 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 120
Query: 120 FYDKF 124
F+ +F
Sbjct: 121 FFCRF 125
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 210 LYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC---EANALNASHVTDSLLERLI 266
LY LR +++F + +GR PG + + KLK L + L+ D + E
Sbjct: 422 LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCR 481
Query: 267 IGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIM 307
G E + A +GG QEVIK I+ + N + + M
Sbjct: 482 YGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 522
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 5 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 62 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 118
Query: 120 FYDKF 124
F+ +F
Sbjct: 119 FFCRF 123
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 210 LYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC---EANALNASHVTDSLLERLI 266
LY LR +++F + +GR PG + + KLK L + L+ D + E
Sbjct: 425 LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCR 484
Query: 267 IGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIM 307
G E + A +GG QEVIK I+ + N + + M
Sbjct: 485 YGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 525
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 5 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 62 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 118
Query: 120 FYDKF 124
F+ +F
Sbjct: 119 FFCRF 123
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 210 LYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC---EANALNASHVTDSLLERLI 266
LY LR +++F + +GR PG + + KLK L + L+ D + E
Sbjct: 420 LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCR 479
Query: 267 IGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIM 307
G E + A +GG QEVIK I+ + N + + M
Sbjct: 480 YGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 520
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 7 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 64 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 120
Query: 120 FYDKF 124
F+ +F
Sbjct: 121 FFCRF 125
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 210 LYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC---EANALNASHVTDSLLERLI 266
LY LR +++F + +GR PG + + KLK L + L+ D + E
Sbjct: 427 LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCR 486
Query: 267 IGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIM 307
G E + A +GG QEVIK I+ + N + + M
Sbjct: 487 YGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 527
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67
E + +LY RQ+ V G +A ++ S++L+ G+KG E KN+VLAGV S+T+ D V
Sbjct: 4 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQ 63
Query: 68 EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFYDKFDX 126
S F + ++++ G+ +V L + N V V+V L SLD +F
Sbjct: 64 LADLSTQFFL-TEKDI--GQKRGDVTRAKLAELNAYVPVNV----LDSLDDVTQLSQFQV 116
Query: 127 XXXXXXXXXXXXL-INEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
+ INE C S + F + + R G FVDL
Sbjct: 117 VVATDTVSLEDKVKINEFCH--SSGIRFISSETRGLFGNTFVDL 158
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGS----- 57
E+ T+ + YD QI V+G D Q++++ S + + G E KN L G+GS
Sbjct: 397 NEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGY 456
Query: 58 LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR 105
+ + D+ + + + FL P + GK +EV +++ NP ++
Sbjct: 457 IVVTDNDSIEKSNLNRQFLFRPKD---VGKNKSEVAAEAVCAMNPDLK 501
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 206 KASKLYFALRVLEQFE-EAEGRSPGEISIADLPAVLKLKKELC--EANALN-ASHVTDSL 261
+A++L+ + L QF G P ++ D ++KL +L + L V + L
Sbjct: 279 RAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDL 338
Query: 262 LERLIIGTREFTP-VCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMD 308
++ L R P V A GG++ QEV+KA S K PLK F +FD ++
Sbjct: 339 IKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLE 386
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 5 ELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
EL++QE Y+RQI R + D Q L S +L+ G+ G + + AGVG+LTL+D
Sbjct: 3 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107
V+ L D V G+ E D+L NP + ++
Sbjct: 63 FDTVSLSNLQRQTL-HSDATV--GQPKVESARDALTRINPHIAIT 104
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 45 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 101
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 102 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 161
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 162 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NARVILPGMTACIECTLELYPPQVNFPMCT 219
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 220 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 278
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 279 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 331
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 32 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 88
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 89 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 148
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 149 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NARVILPGMTACIECTLELYPPQVNFPMAT 206
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 207 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 265
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 266 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 318
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 151
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 152 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NARVILPGMTACIECTLELYPPQVNFPMAT 209
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 210 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 268
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 269 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 321
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 120
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 121 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 180
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 181 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NARVILPGMTACIECTLELYPPQVNFPMCT 238
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 239 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 297
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 298 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 350
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 151
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 152 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NAQVILPGMTACIECTLELYPPQVNFPMAT 209
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 210 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 268
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 269 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 321
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD---I 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 151
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 152 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NARVILPGMTACIECTLELYPPQVNFPMCT 209
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 210 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 268
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 269 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 321
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 103/296 (34%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 151
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + IEC L YP
Sbjct: 152 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NAAVILPGMTACIECTLELYPPQVNFPMAT 209
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 210 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 268
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 269 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 321
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 104/296 (35%), Gaps = 21/296 (7%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 462
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXXXXXXXXXLINEKCR 145
G+ AEV + L D P V + + FY +F IN
Sbjct: 463 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 522
Query: 146 KLSKRV-----AFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLR-YPSFEEAISVP 199
L V D E F N + + IEC L YP
Sbjct: 523 SLLNYEDGVLDPSSIVPLIDGGTEGFKG--NARVILPGMTACIECTLELYPPQVNFPMCT 580
Query: 200 WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK--LKKELCEANALNASHV 257
++PR +R+L Q+ + + G D P ++ +K L A+ N V
Sbjct: 581 IASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 639
Query: 258 TDSLLERLIIGTREFTPVC----AVVGGILGQEVIKAISCKGEPLKNFFFFDIMDG 309
T L + ++ + P AV+ + EV K + PL N+ F+ +DG
Sbjct: 640 TYRLTQGVV---KRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 692
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVC 93
+LV G G E KN+VL G + L+D + + FL + + G++ A+V
Sbjct: 40 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF---QKKHVGRSKAQVA 96
Query: 94 CDSLKDFNPMVRVSVEKGDLSSLDG--EFYDKF 124
+S+ F P + + + D EF+ +F
Sbjct: 97 KESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 129
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88
++ +LV G G E KN+VL G + L+D + + FL + + G++
Sbjct: 17 VAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF---QKKHVGRS 73
Query: 89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDG--EFYDKF 124
A+V +S+ F P + + + D EF+ +F
Sbjct: 74 KAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 111
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVC 93
+LV G G E KN+VL G + L+D + + FL + + G++ A+V
Sbjct: 20 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF---QKKHVGRSKAQVA 76
Query: 94 CDSLKDFNPMVRVSVEKGDLSSLDG--EFYDKF 124
+S+ F P + + + D EF+ +F
Sbjct: 77 KESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 109
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 14 YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
Y RQI + D Q++L S +L+ G+ G + AGVG+L L DD
Sbjct: 9 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 60
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 14 YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
Y RQI + D Q++L S +L+ G+ G + AGVG+L L DD
Sbjct: 11 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,086,523
Number of Sequences: 62578
Number of extensions: 348437
Number of successful extensions: 975
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 41
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)