Query 020565
Match_columns 324
No_of_seqs 196 out of 1865
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2014 SMT3/SUMO-activating c 100.0 2.1E-68 4.5E-73 469.1 22.3 309 1-319 1-331 (331)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 2.2E-59 4.8E-64 484.2 30.6 293 10-311 3-385 (1008)
3 KOG2012 Ubiquitin activating e 100.0 1.2E-58 2.5E-63 450.0 23.7 295 8-311 14-395 (1013)
4 cd01493 APPBP1_RUB Ubiquitin a 100.0 2.6E-56 5.5E-61 425.1 31.2 298 12-314 1-425 (425)
5 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.9E-53 1.1E-57 382.8 18.6 263 13-310 1-282 (286)
6 cd01492 Aos1_SUMO Ubiquitin ac 100.0 5E-50 1.1E-54 347.8 21.0 196 12-314 2-197 (197)
7 KOG2016 NEDD8-activating compl 100.0 2.3E-49 5E-54 363.3 22.9 304 8-316 4-523 (523)
8 PRK05690 molybdopterin biosynt 100.0 1.1E-48 2.5E-53 350.3 20.7 234 5-319 4-242 (245)
9 cd01485 E1-1_like Ubiquitin ac 100.0 7.1E-48 1.5E-52 334.7 19.7 192 13-313 1-197 (198)
10 PRK08328 hypothetical protein; 100.0 2.4E-47 5.2E-52 339.0 22.8 226 6-316 2-231 (231)
11 PRK07411 hypothetical protein; 100.0 6.5E-47 1.4E-51 359.9 23.3 235 4-318 9-248 (390)
12 PRK05597 molybdopterin biosynt 100.0 1.7E-46 3.7E-51 353.1 22.2 233 7-319 2-239 (355)
13 PRK07878 molybdopterin biosynt 100.0 2.1E-46 4.5E-51 357.1 22.7 238 5-318 14-256 (392)
14 TIGR02355 moeB molybdopterin s 100.0 1.6E-46 3.5E-51 335.0 18.4 228 11-319 2-234 (240)
15 PRK08223 hypothetical protein; 100.0 5.5E-46 1.2E-50 335.1 21.4 253 11-318 7-266 (287)
16 PRK05600 thiamine biosynthesis 100.0 1.2E-45 2.7E-50 348.1 22.5 238 5-319 13-255 (370)
17 cd00757 ThiF_MoeB_HesA_family 100.0 1.2E-45 2.5E-50 328.3 19.2 223 13-316 1-228 (228)
18 PRK07688 thiamine/molybdopteri 100.0 1.8E-43 3.8E-48 330.1 19.7 224 12-317 3-233 (339)
19 PRK12475 thiamine/molybdopteri 100.0 3E-43 6.5E-48 328.4 20.1 227 12-318 3-234 (338)
20 KOG2017 Molybdopterin synthase 100.0 5.8E-44 1.2E-48 319.4 12.8 237 4-320 37-278 (427)
21 TIGR02356 adenyl_thiF thiazole 100.0 1.8E-43 3.9E-48 308.3 15.0 150 13-167 1-153 (202)
22 PRK08762 molybdopterin biosynt 100.0 4E-42 8.7E-47 326.7 23.5 239 4-318 106-349 (376)
23 cd01488 Uba3_RUB Ubiquitin act 100.0 1.3E-40 2.8E-45 302.1 23.5 266 33-318 1-283 (291)
24 COG0476 ThiF Dinucleotide-util 100.0 1E-38 2.2E-43 288.3 20.1 236 5-318 2-244 (254)
25 cd01489 Uba2_SUMO Ubiquitin ac 100.0 3.9E-37 8.5E-42 282.3 23.1 259 33-300 1-283 (312)
26 cd01484 E1-2_like Ubiquitin ac 100.0 1.6E-36 3.5E-41 268.5 22.7 226 33-288 1-234 (234)
27 KOG2015 NEDD8-activating compl 100.0 5.1E-36 1.1E-40 266.0 20.9 280 22-317 31-326 (422)
28 PRK14852 hypothetical protein; 100.0 1.3E-36 2.7E-41 308.8 18.1 247 11-312 312-564 (989)
29 PRK14851 hypothetical protein; 100.0 3.8E-36 8.2E-41 301.2 20.4 256 7-317 19-280 (679)
30 PRK08644 thiamine biosynthesis 100.0 2E-35 4.2E-40 259.1 16.9 149 12-166 9-159 (212)
31 TIGR03603 cyclo_dehy_ocin bact 100.0 4.6E-35 1E-39 270.8 18.6 233 5-318 46-287 (318)
32 PTZ00245 ubiquitin activating 100.0 2.2E-34 4.8E-39 250.6 21.5 122 7-137 2-123 (287)
33 TIGR01408 Ube1 ubiquitin-activ 100.0 1.1E-34 2.4E-39 300.8 21.7 156 11-171 399-564 (1008)
34 PRK15116 sulfur acceptor prote 100.0 1.3E-34 2.8E-39 260.3 16.3 151 5-160 4-156 (268)
35 cd01490 Ube1_repeat2 Ubiquitin 100.0 5.9E-33 1.3E-37 263.7 24.4 133 33-170 1-143 (435)
36 PRK07877 hypothetical protein; 100.0 8.1E-33 1.8E-37 277.8 18.4 247 6-308 80-337 (722)
37 PF00899 ThiF: ThiF family; I 100.0 6.4E-32 1.4E-36 221.1 14.2 132 30-166 1-133 (135)
38 KOG2013 SMT3/SUMO-activating c 100.0 1.1E-31 2.4E-36 249.2 14.0 142 24-170 5-148 (603)
39 cd00755 YgdL_like Family of ac 100.0 8E-31 1.7E-35 231.9 14.1 136 21-161 1-138 (231)
40 cd01483 E1_enzyme_family Super 100.0 2.4E-30 5.2E-35 213.8 14.8 132 33-169 1-133 (143)
41 COG1179 Dinucleotide-utilizing 100.0 5.1E-31 1.1E-35 227.5 11.0 150 6-160 5-156 (263)
42 TIGR01381 E1_like_apg7 E1-like 100.0 2.1E-30 4.5E-35 253.2 16.6 144 24-170 331-492 (664)
43 TIGR02354 thiF_fam2 thiamine b 100.0 4.3E-29 9.3E-34 217.0 16.4 140 20-166 10-151 (200)
44 cd01487 E1_ThiF_like E1_ThiF_l 100.0 3.6E-29 7.8E-34 213.1 15.1 129 33-167 1-131 (174)
45 cd01486 Apg7 Apg7 is an E1-lik 100.0 9.3E-28 2E-32 216.7 13.9 132 33-170 1-152 (307)
46 KOG2012 Ubiquitin activating e 99.9 8.8E-28 1.9E-32 235.0 10.4 192 5-202 400-611 (1013)
47 PRK06153 hypothetical protein; 99.9 1.2E-25 2.6E-30 209.1 13.8 128 24-158 169-299 (393)
48 KOG2018 Predicted dinucleotide 99.9 3.4E-24 7.3E-29 190.2 12.1 145 12-161 55-201 (430)
49 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 9.1E-24 2E-28 187.5 12.7 132 29-167 9-151 (244)
50 TIGR03693 ocin_ThiF_like putat 99.9 9.1E-21 2E-25 184.1 21.0 218 4-318 96-328 (637)
51 KOG2336 Molybdopterin biosynth 99.9 1.8E-21 3.8E-26 170.6 14.1 233 12-320 60-310 (422)
52 KOG2337 Ubiquitin activating E 99.7 4.5E-17 9.8E-22 153.4 7.9 144 24-170 333-494 (669)
53 COG4015 Predicted dinucleotide 98.7 1.6E-07 3.5E-12 76.8 9.7 124 30-164 17-146 (217)
54 PF05237 MoeZ_MoeB: MoeZ/MoeB 98.4 4.3E-07 9.3E-12 67.8 5.1 47 272-318 26-73 (84)
55 PF01488 Shikimate_DH: Shikima 98.1 1.2E-05 2.5E-10 65.6 7.1 79 28-135 9-87 (135)
56 PRK06718 precorrin-2 dehydroge 98.0 5.3E-05 1.2E-09 66.1 11.0 95 28-157 7-101 (202)
57 PRK12549 shikimate 5-dehydroge 98.0 2E-05 4.3E-10 72.4 8.7 77 29-132 125-201 (284)
58 COG1748 LYS9 Saccharopine dehy 98.0 2.6E-05 5.6E-10 74.0 9.4 101 32-162 2-104 (389)
59 TIGR01470 cysG_Nterm siroheme 97.9 0.00014 3.1E-09 63.5 11.0 103 29-165 7-109 (205)
60 PF13241 NAD_binding_7: Putati 97.8 5.5E-05 1.2E-09 58.6 6.2 89 28-157 4-92 (103)
61 PRK06719 precorrin-2 dehydroge 97.7 0.00043 9.3E-09 57.9 10.8 84 28-146 10-93 (157)
62 PRK05562 precorrin-2 dehydroge 97.6 0.001 2.2E-08 58.7 11.4 100 28-161 22-121 (223)
63 PRK12548 shikimate 5-dehydroge 97.5 0.00033 7.2E-09 64.5 8.2 83 29-132 124-208 (289)
64 PF03435 Saccharop_dh: Sacchar 97.4 0.00043 9.4E-09 66.3 7.1 95 34-157 1-98 (386)
65 PRK14027 quinate/shikimate deh 97.4 0.00058 1.3E-08 62.7 7.4 79 29-132 125-203 (283)
66 TIGR01809 Shik-DH-AROM shikima 97.3 0.00061 1.3E-08 62.5 7.1 77 29-132 123-199 (282)
67 PRK04148 hypothetical protein; 97.3 0.0037 8E-08 50.6 10.5 97 30-160 16-112 (134)
68 COG0373 HemA Glutamyl-tRNA red 97.3 0.00049 1.1E-08 65.8 6.1 76 28-135 175-250 (414)
69 TIGR03882 cyclo_dehyd_2 bacter 97.3 0.00016 3.5E-09 62.6 2.4 55 22-76 96-160 (193)
70 PRK12749 quinate/shikimate deh 97.3 0.0011 2.4E-08 61.0 8.1 84 29-132 122-205 (288)
71 PRK00258 aroE shikimate 5-dehy 97.2 0.0013 2.9E-08 60.2 7.8 75 29-133 121-195 (278)
72 PF00056 Ldh_1_N: lactate/mala 97.1 0.0018 3.9E-08 53.1 7.1 74 33-133 2-79 (141)
73 PF03446 NAD_binding_2: NAD bi 97.1 0.00087 1.9E-08 56.3 4.9 114 32-161 2-123 (163)
74 PRK13940 glutamyl-tRNA reducta 97.1 0.0011 2.5E-08 64.0 6.3 77 28-135 178-254 (414)
75 COG0169 AroE Shikimate 5-dehyd 97.0 0.0023 4.9E-08 58.6 7.7 75 30-132 125-199 (283)
76 COG1648 CysG Siroheme synthase 97.0 0.0037 7.9E-08 54.8 8.5 100 28-161 9-108 (210)
77 cd01065 NAD_bind_Shikimate_DH 96.9 0.0023 4.9E-08 52.8 6.3 35 29-63 17-51 (155)
78 PRK10637 cysG siroheme synthas 96.9 0.0082 1.8E-07 58.9 11.1 97 28-158 9-105 (457)
79 cd05291 HicDH_like L-2-hydroxy 96.9 0.0036 7.8E-08 58.1 7.8 75 32-133 1-78 (306)
80 COG0569 TrkA K+ transport syst 96.8 0.0069 1.5E-07 53.7 9.0 97 32-159 1-101 (225)
81 PRK15469 ghrA bifunctional gly 96.8 0.0041 9E-08 57.9 7.6 93 27-157 132-226 (312)
82 PRK00066 ldh L-lactate dehydro 96.8 0.0075 1.6E-07 56.2 8.9 75 31-132 6-82 (315)
83 cd05213 NAD_bind_Glutamyl_tRNA 96.8 0.006 1.3E-07 56.8 8.3 76 29-136 176-251 (311)
84 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0054 1.2E-07 51.2 6.9 106 33-161 1-106 (157)
85 PRK05708 2-dehydropantoate 2-r 96.7 0.011 2.3E-07 54.9 9.6 33 31-64 2-34 (305)
86 PF02134 UBACT: Repeat in ubiq 96.6 0.0068 1.5E-07 43.0 5.9 56 236-293 10-66 (67)
87 TIGR01035 hemA glutamyl-tRNA r 96.6 0.0071 1.5E-07 58.7 8.1 36 28-63 177-212 (417)
88 cd05290 LDH_3 A subgroup of L- 96.6 0.011 2.4E-07 54.9 9.0 74 33-133 1-78 (307)
89 PF03807 F420_oxidored: NADP o 96.6 0.0055 1.2E-07 46.3 5.8 90 33-156 1-93 (96)
90 PF02254 TrkA_N: TrkA-N domain 96.6 0.024 5.3E-07 44.2 9.6 89 34-153 1-92 (116)
91 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.0093 2E-07 51.4 7.3 83 28-134 25-108 (194)
92 PRK09599 6-phosphogluconate de 96.5 0.0063 1.4E-07 56.3 6.4 115 33-161 2-123 (301)
93 PF02558 ApbA: Ketopantoate re 96.5 0.0069 1.5E-07 49.8 6.0 89 34-146 1-90 (151)
94 COG1086 Predicted nucleoside-d 96.3 0.016 3.5E-07 57.2 8.4 85 24-130 243-332 (588)
95 KOG0069 Glyoxylate/hydroxypyru 96.3 0.017 3.7E-07 53.9 8.1 94 27-157 158-253 (336)
96 PRK14106 murD UDP-N-acetylmura 96.3 0.024 5.1E-07 55.4 9.5 95 29-155 3-97 (450)
97 PF01113 DapB_N: Dihydrodipico 96.2 0.017 3.7E-07 46.2 6.8 95 33-157 2-98 (124)
98 PLN00203 glutamyl-tRNA reducta 96.2 0.0079 1.7E-07 59.8 5.8 78 29-135 264-341 (519)
99 cd00300 LDH_like L-lactate deh 96.2 0.021 4.5E-07 52.9 8.3 74 34-133 1-76 (300)
100 PRK07066 3-hydroxybutyryl-CoA 96.2 0.023 5.1E-07 53.0 8.5 111 32-161 8-122 (321)
101 PRK06522 2-dehydropantoate 2-r 96.2 0.034 7.3E-07 51.1 9.4 31 33-64 2-32 (304)
102 cd05293 LDH_1 A subgroup of L- 96.2 0.028 6.1E-07 52.3 8.8 74 31-132 3-80 (312)
103 PRK12550 shikimate 5-dehydroge 96.1 0.017 3.7E-07 52.7 7.1 33 31-63 122-154 (272)
104 PTZ00082 L-lactate dehydrogena 96.1 0.019 4.2E-07 53.7 7.6 35 29-63 4-38 (321)
105 PTZ00117 malate dehydrogenase; 96.1 0.015 3.3E-07 54.3 6.9 35 29-63 3-37 (319)
106 PLN02602 lactate dehydrogenase 96.1 0.024 5.2E-07 53.6 8.2 74 32-133 38-115 (350)
107 COG1893 ApbA Ketopantoate redu 96.1 0.02 4.4E-07 53.2 7.6 29 32-61 1-29 (307)
108 PRK08293 3-hydroxybutyryl-CoA 96.1 0.016 3.4E-07 53.3 6.7 32 32-64 4-35 (287)
109 PRK09496 trkA potassium transp 96.1 0.038 8.2E-07 53.9 9.8 93 29-152 229-324 (453)
110 PRK07819 3-hydroxybutyryl-CoA 96.1 0.016 3.5E-07 53.3 6.7 33 32-65 6-38 (286)
111 PRK00094 gpsA NAD(P)H-dependen 96.1 0.032 7E-07 51.8 8.8 31 33-64 3-33 (325)
112 PRK06130 3-hydroxybutyryl-CoA 96.0 0.037 8E-07 51.4 9.1 31 32-63 5-35 (311)
113 PRK03562 glutathione-regulated 96.0 0.038 8.1E-07 56.4 9.8 91 31-152 400-493 (621)
114 PRK07502 cyclohexadienyl dehyd 96.0 0.037 8E-07 51.3 9.0 33 31-63 6-39 (307)
115 PRK13403 ketol-acid reductoiso 96.0 0.021 4.6E-07 53.1 7.1 37 26-63 11-47 (335)
116 PRK00045 hemA glutamyl-tRNA re 96.0 0.012 2.6E-07 57.2 5.7 35 29-63 180-214 (423)
117 PRK08618 ornithine cyclodeamin 96.0 0.032 6.9E-07 52.3 8.4 78 30-135 126-204 (325)
118 PRK11880 pyrroline-5-carboxyla 96.0 0.051 1.1E-06 49.2 9.4 32 32-63 3-36 (267)
119 PRK06141 ornithine cyclodeamin 95.9 0.031 6.8E-07 52.1 8.1 77 29-134 123-200 (314)
120 PRK07574 formate dehydrogenase 95.9 0.028 6E-07 53.9 7.8 95 27-157 188-284 (385)
121 PLN02819 lysine-ketoglutarate 95.9 0.046 1E-06 58.4 10.0 25 30-54 568-592 (1042)
122 cd05311 NAD_bind_2_malic_enz N 95.9 0.0095 2.1E-07 52.8 4.2 37 28-64 22-60 (226)
123 PRK05479 ketol-acid reductoiso 95.9 0.023 5E-07 53.1 6.9 35 27-62 13-47 (330)
124 TIGR02992 ectoine_eutC ectoine 95.9 0.036 7.8E-07 52.0 8.2 75 31-133 129-204 (326)
125 PF13460 NAD_binding_10: NADH( 95.9 0.064 1.4E-06 45.2 9.1 95 34-163 1-103 (183)
126 COG0111 SerA Phosphoglycerate 95.9 0.019 4.2E-07 53.7 6.2 108 13-157 120-233 (324)
127 PRK03659 glutathione-regulated 95.8 0.05 1.1E-06 55.3 9.7 93 31-154 400-495 (601)
128 PF01118 Semialdhyde_dh: Semia 95.8 0.1 2.2E-06 41.3 9.6 95 33-157 1-97 (121)
129 PRK07680 late competence prote 95.8 0.041 8.9E-07 50.1 8.2 31 33-63 2-35 (273)
130 PRK10537 voltage-gated potassi 95.8 0.1 2.2E-06 50.3 11.1 93 26-151 235-330 (393)
131 PRK12921 2-dehydropantoate 2-r 95.8 0.038 8.3E-07 50.9 8.0 30 33-63 2-31 (305)
132 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.016 3.5E-07 48.9 5.0 35 28-63 41-76 (168)
133 PLN02350 phosphogluconate dehy 95.7 0.096 2.1E-06 51.8 10.8 120 32-161 7-136 (493)
134 PRK12491 pyrroline-5-carboxyla 95.7 0.071 1.5E-06 48.7 9.3 80 31-144 2-84 (272)
135 PF03949 Malic_M: Malic enzyme 95.7 0.046 1E-06 49.1 7.8 111 27-162 21-145 (255)
136 PRK07340 ornithine cyclodeamin 95.7 0.04 8.6E-07 51.2 7.6 76 29-134 123-199 (304)
137 PF00070 Pyr_redox: Pyridine n 95.7 0.045 9.7E-07 39.9 6.4 54 33-101 1-54 (80)
138 PTZ00142 6-phosphogluconate de 95.7 0.039 8.5E-07 54.3 7.9 120 32-161 2-130 (470)
139 PRK14620 NAD(P)H-dependent gly 95.7 0.049 1.1E-06 50.9 8.3 106 33-161 2-109 (326)
140 PRK07417 arogenate dehydrogena 95.7 0.069 1.5E-06 48.8 9.1 30 33-63 2-31 (279)
141 PRK13243 glyoxylate reductase; 95.7 0.024 5.3E-07 53.3 6.1 36 27-63 146-181 (333)
142 PF02719 Polysacc_synt_2: Poly 95.6 0.023 5E-07 52.1 5.7 76 34-131 1-85 (293)
143 PLN03139 formate dehydrogenase 95.6 0.039 8.5E-07 52.8 7.5 36 27-63 195-230 (386)
144 PRK09260 3-hydroxybutyryl-CoA 95.6 0.05 1.1E-06 49.9 8.0 33 32-65 2-34 (288)
145 TIGR00507 aroE shikimate 5-deh 95.6 0.041 9E-07 50.1 7.2 73 30-133 116-188 (270)
146 TIGR00872 gnd_rel 6-phosphoglu 95.5 0.023 5E-07 52.5 5.5 115 33-161 2-122 (298)
147 PRK10669 putative cation:proto 95.5 0.093 2E-06 52.9 10.2 33 31-64 417-449 (558)
148 PF02737 3HCDH_N: 3-hydroxyacy 95.5 0.016 3.5E-07 49.5 4.0 33 33-66 1-33 (180)
149 PRK08410 2-hydroxyacid dehydro 95.5 0.029 6.3E-07 52.2 5.9 36 27-63 141-176 (311)
150 cd05312 NAD_bind_1_malic_enz N 95.4 0.11 2.4E-06 47.3 9.3 109 27-161 21-143 (279)
151 PRK14618 NAD(P)H-dependent gly 95.4 0.06 1.3E-06 50.4 7.9 32 32-64 5-36 (328)
152 PLN02688 pyrroline-5-carboxyla 95.4 0.11 2.4E-06 47.0 9.3 29 33-61 2-33 (266)
153 PRK05476 S-adenosyl-L-homocyst 95.4 0.065 1.4E-06 51.9 8.1 37 28-65 209-245 (425)
154 PRK07634 pyrroline-5-carboxyla 95.4 0.12 2.7E-06 45.9 9.5 82 30-144 3-87 (245)
155 TIGR01915 npdG NADPH-dependent 95.4 0.16 3.5E-06 44.6 10.1 85 33-144 2-89 (219)
156 PF10727 Rossmann-like: Rossma 95.3 0.075 1.6E-06 42.7 7.1 81 30-144 9-89 (127)
157 PRK00048 dihydrodipicolinate r 95.3 0.17 3.6E-06 45.8 10.2 87 32-156 2-90 (257)
158 cd05292 LDH_2 A subgroup of L- 95.3 0.058 1.2E-06 50.2 7.3 31 33-63 2-33 (308)
159 PRK12439 NAD(P)H-dependent gly 95.3 0.081 1.8E-06 49.9 8.4 107 32-161 8-114 (341)
160 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.085 1.8E-06 49.0 8.3 32 33-65 4-35 (308)
161 PRK09496 trkA potassium transp 95.3 0.14 3.1E-06 49.8 10.3 84 33-146 2-88 (453)
162 PRK07679 pyrroline-5-carboxyla 95.2 0.14 3E-06 46.8 9.5 25 31-55 3-27 (279)
163 PRK07530 3-hydroxybutyryl-CoA 95.2 0.32 6.8E-06 44.7 11.9 33 31-64 4-36 (292)
164 PRK06197 short chain dehydroge 95.2 0.053 1.2E-06 49.9 6.7 37 26-63 11-48 (306)
165 TIGR00873 gnd 6-phosphoglucona 95.2 0.042 9.2E-07 54.0 6.3 120 33-161 1-127 (467)
166 cd01075 NAD_bind_Leu_Phe_Val_D 95.2 0.11 2.4E-06 45.1 8.2 36 28-64 25-60 (200)
167 PRK05854 short chain dehydroge 95.2 0.069 1.5E-06 49.6 7.4 64 28-114 11-75 (313)
168 PLN02545 3-hydroxybutyryl-CoA 95.2 0.17 3.7E-06 46.6 10.0 32 32-64 5-36 (295)
169 PRK07063 short chain dehydroge 95.1 0.094 2E-06 46.9 8.0 81 28-131 4-94 (260)
170 cd05191 NAD_bind_amino_acid_DH 95.1 0.032 7E-07 41.4 4.2 36 28-63 20-55 (86)
171 PRK14982 acyl-ACP reductase; P 95.1 0.12 2.6E-06 48.7 8.7 36 28-63 152-189 (340)
172 PRK08291 ectoine utilization p 95.1 0.1 2.2E-06 49.0 8.3 76 31-134 132-208 (330)
173 PRK06932 glycerate dehydrogena 95.1 0.053 1.1E-06 50.6 6.4 89 27-157 143-233 (314)
174 PRK06035 3-hydroxyacyl-CoA deh 95.1 0.096 2.1E-06 48.2 8.0 33 32-65 4-36 (291)
175 PRK05225 ketol-acid reductoiso 95.1 0.049 1.1E-06 52.8 6.1 51 6-56 7-61 (487)
176 PRK06223 malate dehydrogenase; 95.1 0.08 1.7E-06 49.0 7.5 32 32-63 3-34 (307)
177 PF02826 2-Hacid_dh_C: D-isome 95.0 0.022 4.8E-07 48.5 3.5 40 25-65 30-69 (178)
178 PRK05808 3-hydroxybutyryl-CoA 95.0 0.21 4.5E-06 45.7 10.0 32 32-64 4-35 (282)
179 PRK01438 murD UDP-N-acetylmura 95.0 0.089 1.9E-06 51.9 8.0 35 29-64 14-48 (480)
180 TIGR01759 MalateDH-SF1 malate 95.0 0.075 1.6E-06 49.8 7.0 78 32-133 4-89 (323)
181 PRK06249 2-dehydropantoate 2-r 95.0 0.097 2.1E-06 48.7 7.8 34 31-65 5-38 (313)
182 PRK12480 D-lactate dehydrogena 95.0 0.15 3.2E-06 47.9 9.0 91 27-157 142-234 (330)
183 cd00401 AdoHcyase S-adenosyl-L 94.9 0.19 4.2E-06 48.6 9.9 35 29-64 200-234 (413)
184 cd00762 NAD_bind_malic_enz NAD 94.9 0.11 2.3E-06 46.7 7.5 40 27-66 21-70 (254)
185 TIGR00518 alaDH alanine dehydr 94.9 0.064 1.4E-06 51.2 6.5 35 29-64 165-199 (370)
186 PRK12490 6-phosphogluconate de 94.9 0.052 1.1E-06 50.2 5.8 115 33-161 2-123 (299)
187 PTZ00345 glycerol-3-phosphate 94.9 0.12 2.6E-06 49.2 8.3 109 30-161 10-132 (365)
188 PRK07531 bifunctional 3-hydrox 94.9 0.19 4.2E-06 49.9 10.1 32 32-64 5-36 (495)
189 PRK13304 L-aspartate dehydroge 94.9 0.16 3.4E-06 46.2 8.8 32 33-64 3-36 (265)
190 PRK06928 pyrroline-5-carboxyla 94.9 0.19 4.2E-06 45.9 9.4 91 33-155 3-96 (277)
191 COG0281 SfcA Malic enzyme [Ene 94.9 0.085 1.8E-06 50.4 7.1 106 27-161 195-303 (432)
192 cd00650 LDH_MDH_like NAD-depen 94.9 0.067 1.5E-06 48.5 6.3 72 34-132 1-79 (263)
193 PRK08229 2-dehydropantoate 2-r 94.9 0.1 2.2E-06 49.0 7.7 32 32-64 3-34 (341)
194 PRK14619 NAD(P)H-dependent gly 94.9 0.16 3.4E-06 47.2 8.8 33 31-64 4-36 (308)
195 PRK09242 tropinone reductase; 94.8 0.18 3.9E-06 45.0 8.9 81 29-132 7-97 (257)
196 PLN03209 translocon at the inn 94.8 0.29 6.3E-06 49.2 11.0 108 29-161 78-211 (576)
197 KOG4169 15-hydroxyprostaglandi 94.8 0.068 1.5E-06 47.0 5.8 79 29-131 3-91 (261)
198 TIGR01757 Malate-DH_plant mala 94.8 0.081 1.8E-06 50.6 6.9 77 32-133 45-130 (387)
199 TIGR03376 glycerol3P_DH glycer 94.8 0.2 4.2E-06 47.3 9.2 105 33-162 1-120 (342)
200 PRK08251 short chain dehydroge 94.8 0.22 4.8E-06 44.0 9.3 78 31-131 2-89 (248)
201 PLN02240 UDP-glucose 4-epimera 94.7 0.29 6.2E-06 45.8 10.5 34 29-63 3-37 (352)
202 COG0300 DltE Short-chain dehyd 94.7 0.15 3.2E-06 46.3 7.9 63 29-115 4-67 (265)
203 COG0240 GpsA Glycerol-3-phosph 94.7 0.13 2.9E-06 47.8 7.8 103 32-156 2-104 (329)
204 PRK11559 garR tartronate semia 94.7 0.14 3.1E-06 47.0 8.1 114 32-161 3-125 (296)
205 cd01339 LDH-like_MDH L-lactate 94.7 0.11 2.3E-06 48.1 7.2 31 34-64 1-31 (300)
206 COG1023 Gnd Predicted 6-phosph 94.7 0.079 1.7E-06 46.9 5.8 114 33-160 2-122 (300)
207 PRK08655 prephenate dehydrogen 94.6 0.2 4.3E-06 48.9 9.3 31 33-64 2-33 (437)
208 PRK02705 murD UDP-N-acetylmura 94.6 0.24 5.3E-06 48.4 9.9 32 32-64 1-32 (459)
209 PRK06476 pyrroline-5-carboxyla 94.6 0.14 2.9E-06 46.2 7.5 23 33-55 2-24 (258)
210 PLN02520 bifunctional 3-dehydr 94.6 0.066 1.4E-06 53.6 5.9 34 29-63 377-410 (529)
211 COG0039 Mdh Malate/lactate deh 94.5 0.075 1.6E-06 49.3 5.7 33 32-64 1-34 (313)
212 PRK13301 putative L-aspartate 94.5 0.03 6.5E-07 50.5 3.0 119 32-163 3-129 (267)
213 PLN02427 UDP-apiose/xylose syn 94.5 0.19 4.1E-06 48.0 8.7 37 27-63 10-47 (386)
214 PRK06545 prephenate dehydrogen 94.5 0.25 5.5E-06 46.9 9.4 31 32-63 1-31 (359)
215 cd01338 MDH_choloroplast_like 94.4 0.062 1.3E-06 50.3 4.9 33 31-63 2-41 (322)
216 PRK00141 murD UDP-N-acetylmura 94.3 0.22 4.8E-06 49.1 9.0 38 25-63 9-46 (473)
217 PF10087 DUF2325: Uncharacteri 94.3 0.32 7E-06 36.9 8.0 71 88-162 10-87 (97)
218 PRK14192 bifunctional 5,10-met 94.3 0.13 2.8E-06 47.2 6.8 35 28-63 156-191 (283)
219 TIGR03026 NDP-sugDHase nucleot 94.3 0.34 7.3E-06 46.9 10.0 40 33-73 2-41 (411)
220 PRK15461 NADH-dependent gamma- 94.3 0.22 4.8E-06 46.0 8.3 114 32-161 2-124 (296)
221 TIGR02853 spore_dpaA dipicolin 94.3 0.23 4.9E-06 45.7 8.3 35 28-63 148-182 (287)
222 TIGR01763 MalateDH_bact malate 94.3 0.16 3.6E-06 47.1 7.5 32 32-63 2-33 (305)
223 TIGR01505 tartro_sem_red 2-hyd 94.2 0.19 4E-06 46.2 7.8 112 33-160 1-121 (291)
224 PRK09310 aroDE bifunctional 3- 94.2 0.11 2.5E-06 51.2 6.5 34 29-63 330-363 (477)
225 cd01337 MDH_glyoxysomal_mitoch 94.1 0.14 3E-06 47.7 6.6 32 33-64 2-35 (310)
226 COG1712 Predicted dinucleotide 94.1 0.075 1.6E-06 46.6 4.5 117 33-163 2-127 (255)
227 PF12847 Methyltransf_18: Meth 94.1 0.38 8.2E-06 36.9 8.2 78 30-131 1-78 (112)
228 PRK07062 short chain dehydroge 94.1 0.34 7.3E-06 43.4 9.0 81 29-132 6-96 (265)
229 cd00704 MDH Malate dehydrogena 94.1 0.067 1.4E-06 50.1 4.5 33 32-64 1-40 (323)
230 PRK08507 prephenate dehydrogen 94.1 0.32 6.9E-06 44.3 8.9 31 33-63 2-33 (275)
231 PRK07831 short chain dehydroge 94.1 0.25 5.4E-06 44.2 8.1 35 28-63 14-50 (262)
232 PRK11199 tyrA bifunctional cho 94.0 0.53 1.2E-05 45.0 10.7 32 32-64 99-131 (374)
233 TIGR02469 CbiT precorrin-6Y C5 94.0 1.8 4E-05 33.4 12.2 92 31-146 20-111 (124)
234 PLN02780 ketoreductase/ oxidor 94.0 0.28 6E-06 45.8 8.5 61 30-113 52-113 (320)
235 TIGR00465 ilvC ketol-acid redu 94.0 0.36 7.9E-06 45.0 9.2 33 29-62 1-33 (314)
236 PLN00106 malate dehydrogenase 94.0 0.14 2.9E-06 48.0 6.4 36 30-65 17-54 (323)
237 PRK13302 putative L-aspartate 94.0 0.39 8.5E-06 43.8 9.2 34 30-63 5-40 (271)
238 TIGR03589 PseB UDP-N-acetylglu 94.0 0.69 1.5E-05 43.1 11.2 35 29-63 2-38 (324)
239 TIGR01771 L-LDH-NAD L-lactate 94.0 0.16 3.4E-06 47.1 6.7 71 36-133 1-74 (299)
240 PTZ00325 malate dehydrogenase; 94.0 0.18 4E-06 47.1 7.2 35 29-63 6-42 (321)
241 PRK13529 malate dehydrogenase; 93.9 0.22 4.7E-06 49.6 7.9 132 11-161 257-420 (563)
242 PRK09880 L-idonate 5-dehydroge 93.9 0.38 8.3E-06 45.1 9.4 34 30-63 169-202 (343)
243 PLN02206 UDP-glucuronate decar 93.9 0.42 9.1E-06 46.8 9.8 105 29-164 117-239 (442)
244 PRK02006 murD UDP-N-acetylmura 93.9 0.29 6.2E-06 48.6 8.8 35 29-64 5-39 (498)
245 cd05296 GH4_P_beta_glucosidase 93.9 0.19 4.1E-06 48.8 7.3 108 33-166 2-116 (419)
246 PRK15059 tartronate semialdehy 93.9 0.28 6.2E-06 45.2 8.2 111 33-160 2-121 (292)
247 PRK05875 short chain dehydroge 93.9 0.29 6.2E-06 44.1 8.2 34 29-63 5-39 (276)
248 PTZ00431 pyrroline carboxylate 93.8 0.34 7.3E-06 43.8 8.5 34 30-63 2-38 (260)
249 PRK07478 short chain dehydroge 93.8 0.2 4.3E-06 44.6 6.9 34 29-63 4-38 (254)
250 TIGR01202 bchC 2-desacetyl-2-h 93.8 0.41 8.9E-06 44.2 9.2 34 30-63 144-177 (308)
251 PRK02472 murD UDP-N-acetylmura 93.8 0.33 7.2E-06 47.3 9.0 35 29-64 3-37 (447)
252 PRK07231 fabG 3-ketoacyl-(acyl 93.8 0.18 3.9E-06 44.5 6.6 35 29-64 3-38 (251)
253 TIGR00065 ftsZ cell division p 93.8 0.35 7.6E-06 45.8 8.7 43 24-66 10-54 (349)
254 PRK04308 murD UDP-N-acetylmura 93.8 0.35 7.6E-06 47.2 9.1 34 29-63 3-36 (445)
255 TIGR00036 dapB dihydrodipicoli 93.8 0.41 8.9E-06 43.5 8.9 30 33-62 3-34 (266)
256 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.8 0.43 9.4E-06 47.5 9.8 33 31-64 5-37 (503)
257 COG1063 Tdh Threonine dehydrog 93.7 0.18 4E-06 47.6 6.9 93 31-151 169-264 (350)
258 PLN03075 nicotianamine synthas 93.7 1.4 3E-05 40.7 12.3 112 30-166 123-242 (296)
259 TIGR01772 MDH_euk_gproteo mala 93.7 0.16 3.4E-06 47.3 6.2 33 33-65 1-35 (312)
260 PRK13018 cell division protein 93.7 0.44 9.6E-06 45.5 9.2 38 28-65 25-64 (378)
261 PRK00811 spermidine synthase; 93.7 0.33 7.1E-06 44.6 8.1 52 9-63 57-108 (283)
262 PRK09330 cell division protein 93.6 0.5 1.1E-05 45.2 9.6 37 29-65 11-49 (384)
263 PRK01710 murD UDP-N-acetylmura 93.6 0.5 1.1E-05 46.4 9.8 97 27-155 10-106 (458)
264 TIGR00936 ahcY adenosylhomocys 93.6 0.45 9.7E-06 45.9 9.1 36 29-65 193-228 (406)
265 PRK04690 murD UDP-N-acetylmura 93.5 0.4 8.7E-06 47.2 9.1 35 29-64 6-40 (468)
266 PRK08217 fabG 3-ketoacyl-(acyl 93.5 0.18 3.9E-06 44.5 6.1 35 29-64 3-38 (253)
267 PRK05442 malate dehydrogenase; 93.5 0.11 2.5E-06 48.6 4.9 32 32-63 5-43 (326)
268 PLN02306 hydroxypyruvate reduc 93.5 0.29 6.2E-06 47.0 7.7 108 27-157 161-272 (386)
269 PRK11908 NAD-dependent epimera 93.5 0.76 1.6E-05 43.1 10.6 31 32-63 2-34 (347)
270 PRK12826 3-ketoacyl-(acyl-carr 93.5 0.17 3.6E-06 44.6 5.8 35 28-63 3-38 (251)
271 TIGR02622 CDP_4_6_dhtase CDP-g 93.4 0.68 1.5E-05 43.4 10.2 35 29-64 2-37 (349)
272 cd01076 NAD_bind_1_Glu_DH NAD( 93.4 0.28 6.1E-06 43.5 7.1 38 27-64 27-64 (227)
273 PRK03803 murD UDP-N-acetylmura 93.4 0.42 9.1E-06 46.7 8.9 33 30-63 5-37 (448)
274 PLN03129 NADP-dependent malic 93.4 0.29 6.4E-06 48.9 7.7 124 11-161 283-439 (581)
275 TIGR01181 dTDP_gluc_dehyt dTDP 93.4 0.82 1.8E-05 41.7 10.4 31 33-63 1-33 (317)
276 PRK11064 wecC UDP-N-acetyl-D-m 93.3 0.59 1.3E-05 45.3 9.7 40 32-72 4-43 (415)
277 PRK08374 homoserine dehydrogen 93.3 0.67 1.4E-05 43.7 9.7 21 32-52 3-23 (336)
278 COG1250 FadB 3-hydroxyacyl-CoA 93.2 0.16 3.4E-06 47.1 5.3 32 32-64 4-35 (307)
279 COG0287 TyrA Prephenate dehydr 93.2 0.44 9.5E-06 43.6 8.2 32 31-63 3-34 (279)
280 COG1052 LdhA Lactate dehydroge 93.2 0.22 4.7E-06 46.6 6.2 107 13-157 120-236 (324)
281 cd05211 NAD_bind_Glu_Leu_Phe_V 93.1 0.12 2.6E-06 45.6 4.2 39 27-65 19-57 (217)
282 PRK12939 short chain dehydroge 93.1 0.35 7.7E-06 42.6 7.3 34 29-63 5-39 (250)
283 PRK00676 hemA glutamyl-tRNA re 93.1 0.11 2.4E-06 48.8 4.1 36 28-63 171-206 (338)
284 PLN00112 malate dehydrogenase 93.1 0.25 5.4E-06 48.1 6.7 76 31-133 100-186 (444)
285 PRK05867 short chain dehydroge 93.1 0.27 5.7E-06 43.8 6.5 34 29-63 7-41 (253)
286 PRK06949 short chain dehydroge 93.1 0.33 7.3E-06 43.1 7.2 34 29-63 7-41 (258)
287 TIGR01692 HIBADH 3-hydroxyisob 93.1 0.22 4.8E-06 45.7 6.1 110 36-161 1-119 (288)
288 PLN00016 RNA-binding protein; 93.0 0.34 7.4E-06 46.2 7.5 115 26-163 47-170 (378)
289 PF00106 adh_short: short chai 93.0 0.5 1.1E-05 38.8 7.7 61 32-114 1-62 (167)
290 PRK06046 alanine dehydrogenase 93.0 0.44 9.5E-06 44.6 8.0 74 31-133 129-203 (326)
291 PRK05866 short chain dehydroge 93.0 0.3 6.5E-06 44.8 6.8 36 27-63 36-72 (293)
292 PLN02256 arogenate dehydrogena 92.9 0.28 6.1E-06 45.5 6.6 36 27-63 32-67 (304)
293 PRK12862 malic enzyme; Reviewe 92.9 0.24 5.2E-06 51.6 6.6 40 27-66 189-230 (763)
294 PRK13581 D-3-phosphoglycerate 92.9 0.23 5E-06 49.7 6.3 36 27-63 136-171 (526)
295 PRK11730 fadB multifunctional 92.8 0.71 1.5E-05 48.0 10.0 32 32-64 314-345 (715)
296 PRK06172 short chain dehydroge 92.8 0.25 5.5E-06 43.8 6.0 34 29-63 5-39 (253)
297 PRK15409 bifunctional glyoxyla 92.8 0.2 4.3E-06 46.9 5.4 92 28-157 142-236 (323)
298 COG0771 MurD UDP-N-acetylmuram 92.8 0.32 6.9E-06 47.4 6.9 38 29-67 5-42 (448)
299 PLN02896 cinnamyl-alcohol dehy 92.8 0.91 2E-05 42.7 10.0 33 30-63 9-42 (353)
300 PLN02166 dTDP-glucose 4,6-dehy 92.7 0.77 1.7E-05 44.8 9.6 104 30-164 119-240 (436)
301 TIGR03206 benzo_BadH 2-hydroxy 92.7 0.35 7.5E-06 42.7 6.7 34 29-63 1-35 (250)
302 PRK08605 D-lactate dehydrogena 92.7 0.3 6.4E-06 45.9 6.4 36 27-63 142-178 (332)
303 PRK07576 short chain dehydroge 92.7 0.18 3.9E-06 45.3 4.9 37 26-63 4-41 (264)
304 PRK00421 murC UDP-N-acetylmura 92.7 0.63 1.4E-05 45.7 9.0 33 30-63 6-39 (461)
305 PRK09186 flagellin modificatio 92.6 0.4 8.7E-06 42.5 7.0 34 29-63 2-36 (256)
306 PRK08268 3-hydroxy-acyl-CoA de 92.6 0.31 6.8E-06 48.5 6.8 32 32-64 8-39 (507)
307 PRK10675 UDP-galactose-4-epime 92.6 1 2.3E-05 41.7 10.1 30 33-63 2-32 (338)
308 PRK06436 glycerate dehydrogena 92.6 0.1 2.2E-06 48.5 3.1 43 21-64 112-154 (303)
309 cd02201 FtsZ_type1 FtsZ is a G 92.6 0.89 1.9E-05 42.2 9.4 38 33-70 2-41 (304)
310 TIGR03451 mycoS_dep_FDH mycoth 92.5 0.68 1.5E-05 43.6 8.8 33 31-63 177-209 (358)
311 PRK08213 gluconate 5-dehydroge 92.5 0.38 8.2E-06 42.9 6.7 35 28-63 9-44 (259)
312 PRK06181 short chain dehydroge 92.5 0.45 9.8E-06 42.4 7.2 31 32-63 2-33 (263)
313 PRK06935 2-deoxy-D-gluconate 3 92.5 0.41 9E-06 42.6 6.9 35 28-63 12-47 (258)
314 PRK06139 short chain dehydroge 92.4 0.44 9.6E-06 44.7 7.3 35 28-63 4-39 (330)
315 PRK15181 Vi polysaccharide bio 92.4 0.77 1.7E-05 43.2 9.0 36 28-64 12-48 (348)
316 PRK06199 ornithine cyclodeamin 92.4 0.72 1.6E-05 44.2 8.7 81 26-133 147-233 (379)
317 PF01408 GFO_IDH_MocA: Oxidore 92.4 0.52 1.1E-05 36.7 6.6 22 33-54 2-23 (120)
318 PLN02928 oxidoreductase family 92.4 0.13 2.9E-06 48.6 3.6 105 27-157 155-262 (347)
319 PRK00377 cbiT cobalt-precorrin 92.4 2.4 5.1E-05 36.5 11.2 95 29-146 39-134 (198)
320 TIGR02632 RhaD_aldol-ADH rhamn 92.4 0.71 1.5E-05 47.7 9.3 34 29-63 412-446 (676)
321 cd05197 GH4_glycoside_hydrolas 92.3 0.92 2E-05 44.2 9.5 107 33-166 2-115 (425)
322 PRK12861 malic enzyme; Reviewe 92.3 0.33 7.1E-06 50.4 6.7 40 27-66 185-226 (764)
323 COG2084 MmsB 3-hydroxyisobutyr 92.3 0.19 4.2E-06 46.0 4.5 116 32-162 1-125 (286)
324 KOG1205 Predicted dehydrogenas 92.3 0.77 1.7E-05 42.0 8.4 70 23-115 4-74 (282)
325 cd05298 GH4_GlvA_pagL_like Gly 92.2 0.49 1.1E-05 46.2 7.5 107 33-166 2-115 (437)
326 PRK07035 short chain dehydroge 92.2 0.45 9.7E-06 42.2 6.8 34 29-63 6-40 (252)
327 TIGR02371 ala_DH_arch alanine 92.2 0.66 1.4E-05 43.4 8.1 74 31-133 128-202 (325)
328 TIGR01758 MDH_euk_cyt malate d 92.2 0.16 3.5E-06 47.5 4.0 31 33-63 1-38 (324)
329 PRK05565 fabG 3-ketoacyl-(acyl 92.1 0.41 8.8E-06 42.0 6.4 34 29-63 3-38 (247)
330 COG1091 RfbD dTDP-4-dehydrorha 92.1 1 2.2E-05 41.3 8.8 90 33-158 2-100 (281)
331 TIGR01373 soxB sarcosine oxida 92.1 0.23 5.1E-06 47.6 5.1 44 31-74 30-74 (407)
332 PRK13394 3-hydroxybutyrate deh 92.1 0.37 7.9E-06 42.9 6.1 35 28-63 4-39 (262)
333 PRK07523 gluconate 5-dehydroge 92.1 0.38 8.2E-06 42.8 6.1 34 29-63 8-42 (255)
334 PRK06138 short chain dehydroge 92.0 0.8 1.7E-05 40.4 8.1 34 29-63 3-37 (252)
335 PRK07666 fabG 3-ketoacyl-(acyl 92.0 0.41 8.8E-06 42.1 6.1 35 28-63 4-39 (239)
336 PRK12429 3-hydroxybutyrate deh 91.9 0.51 1.1E-05 41.8 6.8 34 29-63 2-36 (258)
337 cd08230 glucose_DH Glucose deh 91.9 1 2.2E-05 42.3 9.2 33 30-63 172-204 (355)
338 PLN02657 3,8-divinyl protochlo 91.9 0.99 2.2E-05 43.3 9.2 33 30-63 59-92 (390)
339 KOG0024 Sorbitol dehydrogenase 91.9 0.4 8.6E-06 44.5 6.0 34 30-63 169-202 (354)
340 PRK06567 putative bifunctional 91.9 0.86 1.9E-05 48.6 9.2 38 29-67 381-418 (1028)
341 PRK03369 murD UDP-N-acetylmura 91.9 0.8 1.7E-05 45.4 8.6 33 30-63 11-43 (488)
342 PRK08339 short chain dehydroge 91.8 0.74 1.6E-05 41.4 7.8 34 29-63 6-40 (263)
343 PRK12771 putative glutamate sy 91.8 0.95 2.1E-05 45.7 9.2 34 30-64 136-169 (564)
344 PRK00517 prmA ribosomal protei 91.7 3.1 6.8E-05 37.2 11.7 33 30-64 119-151 (250)
345 PRK11154 fadJ multifunctional 91.7 1.1 2.5E-05 46.5 9.9 32 32-64 310-342 (708)
346 PLN02858 fructose-bisphosphate 91.7 1.1 2.5E-05 49.9 10.3 115 31-161 4-129 (1378)
347 PLN02214 cinnamoyl-CoA reducta 91.6 1.9 4.2E-05 40.4 10.6 33 29-62 8-41 (342)
348 PRK07814 short chain dehydroge 91.6 0.63 1.4E-05 41.7 7.0 34 29-63 8-42 (263)
349 PRK12746 short chain dehydroge 91.6 0.34 7.3E-06 43.0 5.2 33 27-60 2-35 (254)
350 cd05294 LDH-like_MDH_nadp A la 91.5 0.68 1.5E-05 43.0 7.3 33 32-64 1-35 (309)
351 PRK12937 short chain dehydroge 91.5 0.54 1.2E-05 41.3 6.4 32 29-61 3-35 (245)
352 PLN00141 Tic62-NAD(P)-related 91.4 1.6 3.4E-05 38.9 9.4 33 28-61 14-47 (251)
353 PRK12384 sorbitol-6-phosphate 91.4 1.3 2.8E-05 39.4 8.8 32 31-63 2-34 (259)
354 PRK12825 fabG 3-ketoacyl-(acyl 91.4 0.47 1E-05 41.5 5.9 31 29-60 4-35 (249)
355 PRK12769 putative oxidoreducta 91.4 1.1 2.3E-05 46.2 9.3 59 5-64 297-359 (654)
356 PRK15438 erythronate-4-phospha 91.4 0.23 4.9E-06 47.5 4.1 35 28-63 113-147 (378)
357 PRK06125 short chain dehydroge 91.4 1.1 2.5E-05 39.8 8.4 34 29-63 5-39 (259)
358 COG1064 AdhP Zn-dependent alco 91.4 1.1 2.4E-05 42.1 8.4 85 31-146 167-251 (339)
359 TIGR01316 gltA glutamate synth 91.3 1.5 3.2E-05 43.0 9.9 60 4-64 102-165 (449)
360 PRK06194 hypothetical protein; 91.3 0.58 1.3E-05 42.4 6.6 34 29-63 4-38 (287)
361 PRK07774 short chain dehydroge 91.3 0.66 1.4E-05 40.9 6.8 34 29-63 4-38 (250)
362 PRK07102 short chain dehydroge 91.3 1.3 2.8E-05 38.9 8.7 31 32-63 2-33 (243)
363 PRK07453 protochlorophyllide o 91.3 0.43 9.3E-06 44.3 5.8 34 29-63 4-38 (322)
364 PRK12829 short chain dehydroge 91.3 0.88 1.9E-05 40.4 7.6 37 26-63 6-43 (264)
365 CHL00194 ycf39 Ycf39; Provisio 91.3 1.9 4.2E-05 39.9 10.1 30 33-63 2-32 (317)
366 PRK12779 putative bifunctional 91.2 0.93 2E-05 48.6 8.8 95 30-133 305-402 (944)
367 TIGR02441 fa_ox_alpha_mit fatt 91.2 1.2 2.6E-05 46.5 9.4 32 32-64 336-367 (737)
368 PRK07232 bifunctional malic en 91.1 0.66 1.4E-05 48.2 7.3 39 27-65 181-221 (752)
369 PLN02989 cinnamyl-alcohol dehy 91.1 2.9 6.3E-05 38.6 11.2 31 31-62 5-36 (325)
370 PRK06940 short chain dehydroge 91.1 0.66 1.4E-05 42.0 6.7 31 31-63 2-32 (275)
371 PRK11873 arsM arsenite S-adeno 91.0 2 4.3E-05 38.9 9.8 77 30-131 77-154 (272)
372 PRK08063 enoyl-(acyl carrier p 91.0 0.56 1.2E-05 41.4 6.1 28 29-56 2-30 (250)
373 PRK06914 short chain dehydroge 91.0 1.2 2.7E-05 40.0 8.4 33 30-63 2-35 (280)
374 PLN02852 ferredoxin-NADP+ redu 91.0 0.98 2.1E-05 44.8 8.2 35 30-65 25-61 (491)
375 TIGR00417 speE spermidine synt 91.0 1.2 2.6E-05 40.5 8.3 31 31-63 73-104 (270)
376 PRK08277 D-mannonate oxidoredu 91.0 0.72 1.6E-05 41.6 6.9 35 28-63 7-42 (278)
377 cd08237 ribitol-5-phosphate_DH 91.0 1.2 2.5E-05 41.8 8.4 33 31-63 164-197 (341)
378 cd08281 liver_ADH_like1 Zinc-d 90.9 1.3 2.8E-05 42.0 8.8 33 31-63 192-224 (371)
379 PRK06198 short chain dehydroge 90.9 0.69 1.5E-05 41.1 6.6 37 28-64 3-40 (260)
380 cd08239 THR_DH_like L-threonin 90.9 1.5 3.3E-05 40.7 9.1 34 30-63 163-196 (339)
381 PLN02366 spermidine synthase 90.8 1.2 2.7E-05 41.4 8.2 55 6-64 69-124 (308)
382 PRK00257 erythronate-4-phospha 90.8 0.28 6E-06 47.0 4.0 36 27-63 112-147 (381)
383 PF01564 Spermine_synth: Sperm 90.8 0.16 3.4E-06 45.7 2.2 56 6-64 54-109 (246)
384 COG1062 AdhC Zn-dependent alco 90.8 2.2 4.7E-05 40.0 9.6 89 31-146 186-277 (366)
385 TIGR01087 murD UDP-N-acetylmur 90.7 1.4 2.9E-05 42.9 8.9 30 33-63 1-30 (433)
386 PRK07326 short chain dehydroge 90.7 1.1 2.3E-05 39.2 7.5 34 29-63 4-38 (237)
387 PRK05335 tRNA (uracil-5-)-meth 90.7 0.3 6.6E-06 47.3 4.2 32 31-63 2-33 (436)
388 PRK08589 short chain dehydroge 90.7 0.6 1.3E-05 42.1 6.0 35 28-63 3-38 (272)
389 PRK08945 putative oxoacyl-(acy 90.7 1.1 2.4E-05 39.5 7.7 37 27-64 8-45 (247)
390 PRK04663 murD UDP-N-acetylmura 90.7 1.1 2.4E-05 43.7 8.3 36 28-63 3-40 (438)
391 PRK08125 bifunctional UDP-gluc 90.7 2.2 4.8E-05 43.9 10.9 39 24-63 308-348 (660)
392 PRK12367 short chain dehydroge 90.7 0.38 8.3E-06 43.0 4.6 39 25-64 8-47 (245)
393 PRK06487 glycerate dehydrogena 90.7 0.26 5.7E-06 46.0 3.7 88 27-157 144-233 (317)
394 PLN02740 Alcohol dehydrogenase 90.6 1.6 3.4E-05 41.7 9.1 33 31-63 199-231 (381)
395 TIGR01832 kduD 2-deoxy-D-gluco 90.6 0.7 1.5E-05 40.8 6.3 34 29-63 3-37 (248)
396 PRK05650 short chain dehydroge 90.6 0.86 1.9E-05 40.9 6.9 30 33-63 2-32 (270)
397 PRK14806 bifunctional cyclohex 90.6 1.4 3.1E-05 45.9 9.4 32 32-63 4-36 (735)
398 TIGR02437 FadB fatty oxidation 90.6 0.29 6.2E-06 50.9 4.2 32 32-64 314-345 (714)
399 TIGR01850 argC N-acetyl-gamma- 90.5 1.4 3E-05 41.7 8.5 96 33-158 2-100 (346)
400 PRK09291 short chain dehydroge 90.5 1.3 2.7E-05 39.3 7.9 31 31-62 2-33 (257)
401 PRK12809 putative oxidoreducta 90.5 1.8 3.9E-05 44.4 10.0 60 4-64 279-342 (639)
402 TIGR01296 asd_B aspartate-semi 90.5 1 2.2E-05 42.4 7.6 91 33-157 1-92 (339)
403 PRK05653 fabG 3-ketoacyl-(acyl 90.5 0.68 1.5E-05 40.4 6.1 35 29-64 3-38 (246)
404 PF03721 UDPG_MGDP_dh_N: UDP-g 90.5 0.19 4.2E-06 43.0 2.4 42 32-74 1-42 (185)
405 PRK08306 dipicolinate synthase 90.4 0.34 7.4E-06 44.8 4.2 35 29-64 150-184 (296)
406 cd05297 GH4_alpha_glucosidase_ 90.4 0.5 1.1E-05 46.0 5.5 73 33-132 2-83 (423)
407 COG0665 DadA Glycine/D-amino a 90.4 0.38 8.3E-06 45.5 4.7 41 30-71 3-43 (387)
408 COG2227 UbiG 2-polyprenyl-3-me 90.4 0.91 2E-05 40.4 6.6 113 6-146 12-149 (243)
409 PRK10217 dTDP-glucose 4,6-dehy 90.4 1.7 3.6E-05 40.7 9.0 32 32-63 2-34 (355)
410 PRK08085 gluconate 5-dehydroge 90.4 0.79 1.7E-05 40.7 6.4 34 29-63 7-41 (254)
411 PRK07589 ornithine cyclodeamin 90.4 0.94 2E-05 42.8 7.1 80 26-134 121-204 (346)
412 PRK08818 prephenate dehydrogen 90.4 1.6 3.4E-05 41.7 8.7 35 29-63 2-37 (370)
413 TIGR02440 FadJ fatty oxidation 90.4 1.8 3.8E-05 45.0 9.7 32 32-64 305-337 (699)
414 PRK06113 7-alpha-hydroxysteroi 90.3 0.59 1.3E-05 41.5 5.6 34 29-63 9-43 (255)
415 PLN02253 xanthoxin dehydrogena 90.3 1 2.2E-05 40.6 7.3 35 28-63 15-50 (280)
416 TIGR01082 murC UDP-N-acetylmur 90.3 1.6 3.5E-05 42.6 9.0 30 33-63 1-31 (448)
417 PRK09987 dTDP-4-dehydrorhamnos 90.3 2.3 5.1E-05 39.0 9.7 107 33-163 2-109 (299)
418 PF01494 FAD_binding_3: FAD bi 90.3 0.3 6.4E-06 45.2 3.7 34 32-66 2-35 (356)
419 PRK06270 homoserine dehydrogen 90.2 1.7 3.6E-05 41.0 8.8 22 32-53 3-24 (341)
420 PRK12827 short chain dehydroge 90.2 1.4 3E-05 38.6 7.9 34 29-63 4-38 (249)
421 PF02423 OCD_Mu_crystall: Orni 90.2 1.1 2.4E-05 41.8 7.4 75 31-134 128-203 (313)
422 PRK05876 short chain dehydroge 90.2 0.57 1.2E-05 42.5 5.5 34 29-63 4-38 (275)
423 PRK07109 short chain dehydroge 90.1 0.91 2E-05 42.5 6.9 35 28-63 5-40 (334)
424 PLN02695 GDP-D-mannose-3',5'-e 90.1 1.1 2.4E-05 42.6 7.5 33 30-63 20-53 (370)
425 PRK12814 putative NADPH-depend 90.1 1.3 2.8E-05 45.7 8.4 34 30-64 192-225 (652)
426 PLN02572 UDP-sulfoquinovose sy 90.1 0.91 2E-05 44.4 7.1 36 27-63 43-79 (442)
427 PRK08643 acetoin reductase; Va 90.1 1.1 2.4E-05 39.7 7.1 32 31-63 2-34 (256)
428 PRK05855 short chain dehydroge 90.0 0.72 1.6E-05 46.1 6.5 40 23-63 307-347 (582)
429 PRK05786 fabG 3-ketoacyl-(acyl 89.9 1.9 4.1E-05 37.6 8.4 34 29-63 3-37 (238)
430 PTZ00317 NADP-dependent malic 89.9 0.24 5.3E-06 49.2 2.9 55 11-65 259-341 (559)
431 PRK11259 solA N-methyltryptoph 89.8 0.36 7.8E-06 45.6 4.0 35 31-66 3-37 (376)
432 PF04321 RmlD_sub_bind: RmlD s 89.8 0.65 1.4E-05 42.5 5.5 99 33-162 2-105 (286)
433 PLN02650 dihydroflavonol-4-red 89.8 3.5 7.6E-05 38.6 10.6 32 31-63 5-37 (351)
434 PLN02383 aspartate semialdehyd 89.8 1.7 3.7E-05 41.0 8.4 91 31-157 7-100 (344)
435 PRK03806 murD UDP-N-acetylmura 89.8 1.9 4.2E-05 41.9 9.1 35 29-64 4-38 (438)
436 PLN02653 GDP-mannose 4,6-dehyd 89.7 1 2.2E-05 42.0 6.9 34 29-63 4-38 (340)
437 PRK01581 speE spermidine synth 89.7 1.1 2.4E-05 42.6 6.9 58 5-65 127-184 (374)
438 COG0345 ProC Pyrroline-5-carbo 89.7 2.9 6.3E-05 38.0 9.4 91 32-157 2-95 (266)
439 PRK09126 hypothetical protein; 89.7 0.41 8.8E-06 45.6 4.2 35 30-65 2-36 (392)
440 PRK12409 D-amino acid dehydrog 89.7 0.53 1.1E-05 45.2 5.0 33 32-65 2-34 (410)
441 PF01370 Epimerase: NAD depend 89.7 1.6 3.5E-05 37.8 7.8 25 34-58 1-26 (236)
442 PRK06523 short chain dehydroge 89.6 1.1 2.3E-05 39.9 6.7 37 28-65 6-43 (260)
443 PRK11150 rfaD ADP-L-glycero-D- 89.6 1 2.2E-05 41.3 6.7 31 34-64 2-33 (308)
444 PRK11036 putative S-adenosyl-L 89.6 4.2 9.1E-05 36.4 10.5 76 31-131 45-120 (255)
445 PRK09853 putative selenate red 89.5 1.6 3.6E-05 46.8 8.8 34 30-64 538-571 (1019)
446 PRK14031 glutamate dehydrogena 89.5 1.7 3.7E-05 42.4 8.2 36 28-63 225-260 (444)
447 cd05313 NAD_bind_2_Glu_DH NAD( 89.5 2.4 5.2E-05 38.3 8.7 37 27-63 34-70 (254)
448 PRK08703 short chain dehydroge 89.5 1.7 3.7E-05 38.1 7.8 34 29-63 4-38 (239)
449 PRK06196 oxidoreductase; Provi 89.4 1.4 3E-05 40.7 7.5 35 28-63 23-58 (315)
450 PTZ00188 adrenodoxin reductase 89.4 2.1 4.5E-05 42.4 8.9 95 30-134 38-137 (506)
451 PRK06184 hypothetical protein; 89.4 0.43 9.4E-06 47.3 4.3 34 30-64 2-35 (502)
452 PRK06124 gluconate 5-dehydroge 89.4 0.97 2.1E-05 40.1 6.2 35 29-64 9-44 (256)
453 PF03059 NAS: Nicotianamine sy 89.4 1.7 3.6E-05 39.8 7.6 110 32-166 122-239 (276)
454 PF01266 DAO: FAD dependent ox 89.4 0.51 1.1E-05 43.7 4.5 35 33-68 1-35 (358)
455 PRK12775 putative trifunctiona 89.2 2.3 5.1E-05 46.0 9.9 93 30-133 429-527 (1006)
456 PRK15076 alpha-galactosidase; 89.2 1.5 3.3E-05 42.7 7.8 108 32-166 2-119 (431)
457 PRK12938 acetyacetyl-CoA reduc 89.2 1.1 2.4E-05 39.4 6.4 31 29-60 1-32 (246)
458 PRK07097 gluconate 5-dehydroge 89.2 1 2.2E-05 40.3 6.3 35 28-63 7-42 (265)
459 PRK07067 sorbitol dehydrogenas 89.2 0.98 2.1E-05 40.1 6.1 36 29-65 4-40 (257)
460 TIGR03366 HpnZ_proposed putati 89.2 2.5 5.5E-05 38.2 8.9 34 30-63 120-153 (280)
461 PF00670 AdoHcyase_NAD: S-aden 89.1 0.46 1E-05 39.8 3.5 40 27-67 19-58 (162)
462 TIGR01318 gltD_gamma_fam gluta 89.1 2.3 5E-05 41.9 9.1 60 4-64 110-173 (467)
463 PRK08628 short chain dehydroge 89.1 1.2 2.6E-05 39.6 6.6 34 29-63 5-39 (258)
464 PRK05714 2-octaprenyl-3-methyl 89.1 0.43 9.2E-06 45.8 3.9 34 31-65 2-35 (405)
465 COG0362 Gnd 6-phosphogluconate 89.1 1.8 3.8E-05 41.3 7.7 123 30-160 2-130 (473)
466 PRK07494 2-octaprenyl-6-methox 89.1 0.44 9.6E-06 45.3 4.0 34 31-65 7-40 (388)
467 TIGR01179 galE UDP-glucose-4-e 89.0 3.1 6.6E-05 38.0 9.5 30 33-63 1-31 (328)
468 PRK06823 ornithine cyclodeamin 89.0 2.1 4.6E-05 39.9 8.3 80 26-134 120-203 (315)
469 PRK07890 short chain dehydroge 89.0 1 2.3E-05 39.8 6.1 34 29-63 3-37 (258)
470 TIGR01377 soxA_mon sarcosine o 89.0 0.55 1.2E-05 44.4 4.5 33 33-66 2-34 (380)
471 PRK14874 aspartate-semialdehyd 88.9 1.9 4.1E-05 40.6 8.0 92 32-157 2-94 (334)
472 PRK08862 short chain dehydroge 88.9 1.3 2.8E-05 39.0 6.6 34 29-63 3-37 (227)
473 PRK08013 oxidoreductase; Provi 88.9 0.47 1E-05 45.6 4.1 34 31-65 3-36 (400)
474 TIGR02028 ChlP geranylgeranyl 88.9 0.49 1.1E-05 45.6 4.1 31 33-64 2-32 (398)
475 PRK11749 dihydropyrimidine deh 88.9 1.9 4.1E-05 42.2 8.4 34 30-64 139-172 (457)
476 PRK12810 gltD glutamate syntha 88.9 2.8 6E-05 41.3 9.5 34 30-64 142-175 (471)
477 PRK06185 hypothetical protein; 88.9 0.55 1.2E-05 45.0 4.5 35 30-65 5-39 (407)
478 PRK07904 short chain dehydroge 88.9 2.2 4.8E-05 38.1 8.1 33 31-63 8-41 (253)
479 TIGR03364 HpnW_proposed FAD de 88.8 0.7 1.5E-05 43.5 5.1 34 33-67 2-35 (365)
480 PRK06947 glucose-1-dehydrogena 88.8 1.6 3.4E-05 38.5 7.1 29 32-61 3-32 (248)
481 KOG0409 Predicted dehydrogenas 88.8 0.86 1.9E-05 41.8 5.3 140 6-161 7-159 (327)
482 PRK05872 short chain dehydroge 88.7 2 4.3E-05 39.3 7.9 34 29-63 7-41 (296)
483 TIGR00137 gid_trmFO tRNA:m(5)U 88.7 0.58 1.3E-05 45.5 4.4 31 32-63 1-31 (433)
484 PLN02503 fatty acyl-CoA reduct 88.7 2.7 5.9E-05 42.8 9.4 132 22-163 110-273 (605)
485 PF05368 NmrA: NmrA-like famil 88.6 5.2 0.00011 35.0 10.3 92 34-156 1-100 (233)
486 PRK08324 short chain dehydroge 88.6 2.9 6.2E-05 43.3 9.8 33 30-63 421-454 (681)
487 PRK08850 2-octaprenyl-6-methox 88.6 0.51 1.1E-05 45.3 4.1 33 31-64 4-36 (405)
488 TIGR00715 precor6x_red precorr 88.6 3.6 7.9E-05 37.2 9.3 93 32-156 1-98 (256)
489 PRK05671 aspartate-semialdehyd 88.6 2.5 5.4E-05 39.8 8.5 90 32-157 5-97 (336)
490 PRK12743 oxidoreductase; Provi 88.6 1.7 3.8E-05 38.6 7.3 30 31-61 2-32 (256)
491 PLN02823 spermine synthase 88.5 1.4 3E-05 41.5 6.8 57 6-65 81-137 (336)
492 PRK15451 tRNA cmo(5)U34 methyl 88.5 14 0.0003 33.0 13.1 96 8-130 22-132 (247)
493 PRK07677 short chain dehydroge 88.5 1.2 2.7E-05 39.4 6.3 32 32-64 2-34 (252)
494 PLN02968 Probable N-acetyl-gam 88.5 2.2 4.8E-05 40.9 8.2 98 30-158 37-135 (381)
495 TIGR01746 Thioester-redct thio 88.4 3.9 8.5E-05 37.9 9.9 31 33-63 1-33 (367)
496 PRK08416 7-alpha-hydroxysteroi 88.4 2.3 5E-05 37.9 8.0 34 27-61 4-38 (260)
497 PRK08264 short chain dehydroge 88.4 0.64 1.4E-05 40.7 4.3 37 29-65 4-41 (238)
498 COG0493 GltD NADPH-dependent g 88.4 2 4.4E-05 42.2 8.1 114 11-132 93-217 (457)
499 TIGR03466 HpnA hopanoid-associ 88.3 3 6.6E-05 38.2 8.9 31 33-64 2-33 (328)
500 PRK07236 hypothetical protein; 88.3 0.59 1.3E-05 44.6 4.3 36 29-65 4-39 (386)
No 1
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-68 Score=469.08 Aligned_cols=309 Identities=55% Similarity=0.855 Sum_probs=288.3
Q ss_pred CCCCCCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCC
Q 020565 1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD 80 (324)
Q Consensus 1 ~~~~~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~ 80 (324)
|.+.+||++|...||||||+||.++|++|+++||||+|.+|+|+|++|||+++||++++++|+..|++++++.|||+..+
T Consensus 1 m~~~else~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~ 80 (331)
T KOG2014|consen 1 MKGEELSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISAS 80 (331)
T ss_pred CchhhhhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchh
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 81 di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
++ |++||++..++++++||.|++.+..+++.+..+++|.+||+||.+..+.+....+|.+||+ .+|+|+.++++|
T Consensus 81 ~v---g~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk--~~i~F~a~d~~g 155 (331)
T KOG2014|consen 81 SV---GQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRK--LNIAFYAGDCFG 155 (331)
T ss_pred hh---chHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHh--cCceEEeccccc
Confidence 99 9999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ceEEEEEecCceeeeecCc-----------------ccccccccCCCChHHhhccCcc----cCCCchhHHHHHHHHHHH
Q 020565 161 SCGEIFVDLQNHKYSKQKI-----------------EETIECQLRYPSFEEAISVPWR----ALPRKASKLYFALRVLEQ 219 (324)
Q Consensus 161 ~~g~v~~d~~~~~~~~~~~-----------------~~~~~~~~~f~~~~e~l~~~~~----~~~~~~~~~~~~~~~l~~ 219 (324)
++|+.|+|+++|.|...+. .+.+.+...|||+.|+++.+|. ..++|..+.+++++++..
T Consensus 156 ~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~ 235 (331)
T KOG2014|consen 156 LCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLK 235 (331)
T ss_pred eeeeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHH
Confidence 9999999999999876521 1124567899999999999993 456788899999999999
Q ss_pred HHHHhCCCCCCCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcc
Q 020565 220 FEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPL 298 (324)
Q Consensus 220 f~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl 298 (324)
|.+.+++.|+.-+.+|++.++.+.++++... ..++++++ ++.. ..++++|+||++||++||||||+||++..|+
T Consensus 236 f~~s~~r~pg~~~~~d~erl~~I~~ell~s~----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl 310 (331)
T KOG2014|consen 236 FRTSEGRDPGETSEEDLERLLQIRNELLESE----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPL 310 (331)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhhcccc----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcc
Confidence 9999999999777899999999999998843 44677777 7777 9999999999999999999999999999999
Q ss_pred cceEEEeccCCceeEEecCCC
Q 020565 299 KNFFFFDIMDGKGVVEDVSSP 319 (324)
Q Consensus 299 ~~~~~~D~~~~~~~~~~~~~~ 319 (324)
+|+|+||+.++.+.+++++|+
T Consensus 311 ~Nff~fdg~~g~g~ie~l~~~ 331 (331)
T KOG2014|consen 311 NNFFIFDGETGKGPIEDLGPK 331 (331)
T ss_pred cceEEeecccCceehhhcCCC
Confidence 999999999999999999984
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=2.2e-59 Score=484.18 Aligned_cols=293 Identities=32% Similarity=0.505 Sum_probs=268.4
Q ss_pred HHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccH
Q 020565 10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI 89 (324)
Q Consensus 10 e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k 89 (324)
+.++||||+++||.++|++|++++|||+||||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++|| |++|
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~K 79 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRNR 79 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---CchH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCC--ccEEEeeecCceEEEEE
Q 020565 90 AEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--VAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 90 a~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~--ip~i~~~~~G~~g~v~~ 167 (324)
|++++++|+++||+|+|+++...++ .+++++||+||+|.++.+.+..+|++||+ ++ ||||++++.|++|++|+
T Consensus 80 aea~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr~--~~~~I~fI~~~~~G~~G~vf~ 154 (1008)
T TIGR01408 80 AEAVVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCHS--QCPPIAFISADVRGLFGSLFC 154 (1008)
T ss_pred HHHHHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHHH--cCCCeEEEEEeecceEEEEEe
Confidence 9999999999999999999877654 57899999999999999999999999999 88 99999999999999999
Q ss_pred ecCc-eeeeecCccc-----------------------------------------------------------------
Q 020565 168 DLQN-HKYSKQKIEE----------------------------------------------------------------- 181 (324)
Q Consensus 168 d~~~-~~~~~~~~~~----------------------------------------------------------------- 181 (324)
|||+ |.+.++++++
T Consensus 155 D~g~~f~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i~dt 234 (1008)
T TIGR01408 155 DFGDEFEVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGDT 234 (1008)
T ss_pred cCCCceEEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEeccc
Confidence 9996 6666543210
Q ss_pred ---------------ccccccCCCChHHhhccC------cccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565 182 ---------------TIECQLRYPSFEEAISVP------WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (324)
Q Consensus 182 ---------------~~~~~~~f~~~~e~l~~~------~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~ 240 (324)
+.|..+.|.++++++..| |.++ .+.+.+|+++++|++|.+.|+++|.+++.+|+++++
T Consensus 235 ~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~-~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~ 313 (1008)
T TIGR01408 235 TELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKP-ERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELL 313 (1008)
T ss_pred cccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhc-CCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 124456789999999887 5554 377789999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce
Q 020565 241 KLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG 311 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~ 311 (324)
++++++++..+.+.+.+++++++.+++ +.++++|++|++||++||||||++||+|.|++||++||+.++-.
T Consensus 314 ~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~ 385 (1008)
T TIGR01408 314 KLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLP 385 (1008)
T ss_pred HHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCC
Confidence 999999998887777799999999999 99999999999999999999999999999999999999988753
No 3
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-58 Score=450.02 Aligned_cols=295 Identities=32% Similarity=0.525 Sum_probs=273.4
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc
Q 020565 8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK 87 (324)
Q Consensus 8 ~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~ 87 (324)
+.+...|+||+++.|.+++++|..++|||.|++|+|.||||||+++||+++||.|+..+..+||+.||+++++|| |+
T Consensus 14 ~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---gk 90 (1013)
T KOG2012|consen 14 EIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---GK 90 (1013)
T ss_pred hhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---CC
Confidence 556789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565 88 TIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 88 ~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~ 167 (324)
+||++..++|.+||++|.|.+++..++ .+++++|++||.|..+.+....||++||+ ++|.||.+.+.|++|++||
T Consensus 91 nRA~as~~~LaeLN~yV~V~v~t~~~~---~e~L~~FqvVVlt~~~le~q~~i~~fch~--~~i~fi~ad~RGLfg~lFC 165 (1013)
T KOG2012|consen 91 NRAEASVEKLAELNNYVPVVVLTGPLT---EEFLSDFQVVVLTDASLEEQLKINDFCHS--HGIAFIAADTRGLFGQLFC 165 (1013)
T ss_pred chHHHHHHHHHHhhcceeeEEecCccc---HHHHhCCcEEEEecCchHHHHHHHHHHHh--cCeEEEEeccchhhhhhhc
Confidence 999999999999999999999877654 78999999999999999999999999999 9999999999999999999
Q ss_pred ecC-ceeeeecCccc-----------------------------------------------------------------
Q 020565 168 DLQ-NHKYSKQKIEE----------------------------------------------------------------- 181 (324)
Q Consensus 168 d~~-~~~~~~~~~~~----------------------------------------------------------------- 181 (324)
||| +|++.+.++++
T Consensus 166 DFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igdt 245 (1013)
T KOG2012|consen 166 DFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSIGDT 245 (1013)
T ss_pred cCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEeccc
Confidence 999 78877766542
Q ss_pred ---------------ccccccCCCChHHhhccC----ccc-CCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHH
Q 020565 182 ---------------TIECQLRYPSFEEAISVP----WRA-LPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK 241 (324)
Q Consensus 182 ---------------~~~~~~~f~~~~e~l~~~----~~~-~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~ 241 (324)
+.|++++|.|+++++..| |.. -..|++.+|.+|+||++|.++||++|.+++++|+++|++
T Consensus 246 ~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~~ 325 (1013)
T KOG2012|consen 246 TEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELVE 325 (1013)
T ss_pred cchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Confidence 467788999999999887 111 125788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce
Q 020565 242 LKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG 311 (324)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~ 311 (324)
++..+.+..+ ....+++++++.++. +++.+.||+|++||++||||+|++|||++||.||||||+.++--
T Consensus 326 l~~~i~~~~~-~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP 395 (1013)
T KOG2012|consen 326 LARDISEGLG-LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLP 395 (1013)
T ss_pred HHHHhhhhcc-ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCC
Confidence 9999988777 467899999999999 99999999999999999999999999999999999999988753
No 4
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=2.6e-56 Score=425.14 Aligned_cols=298 Identities=27% Similarity=0.414 Sum_probs=251.6
Q ss_pred HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (324)
Q Consensus 12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~ 91 (324)
.|||||+|+||.+||++|++++|+|+|+||+|+|++|||+++|||+|||+|++.|+.+|+++|||++.+|+ |++||+
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~ 77 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAE 77 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCCeEeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEe
Q 020565 92 VCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD 168 (324)
Q Consensus 92 ~~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d 168 (324)
+++++|+++||+|+++.+...+++ ...+++++||+||+|.++......++++|++ +++|+|.+++.|++|+++++
T Consensus 78 ~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~--~~iPlI~~~s~G~~G~v~v~ 155 (425)
T cd01493 78 ATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWS--ANIPLLYVRSYGLYGYIRIQ 155 (425)
T ss_pred HHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEecccCEEEEEEE
Confidence 999999999999999998877654 3468899999999999999999999999999 99999999999999999999
Q ss_pred cCceeeeecCccccc-----------------------------------------------------cc----------
Q 020565 169 LQNHKYSKQKIEETI-----------------------------------------------------EC---------- 185 (324)
Q Consensus 169 ~~~~~~~~~~~~~~~-----------------------------------------------------~~---------- 185 (324)
+++|.+.+.+++... |+
T Consensus 156 ~~~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~ 235 (425)
T cd01493 156 LKEHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRD 235 (425)
T ss_pred ECCeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 999998887654200 00
Q ss_pred --------ccCCCChHHhhccCccc-----CC----------------CchhHHHHHHHHHHHHHHH-hCCCCCCCC---
Q 020565 186 --------QLRYPSFEEAISVPWRA-----LP----------------RKASKLYFALRVLEQFEEA-EGRSPGEIS--- 232 (324)
Q Consensus 186 --------~~~f~~~~e~l~~~~~~-----~~----------------~~~~~~~~~~~~l~~f~~~-~~~~p~~~~--- 232 (324)
....++|+||....|.. ++ ...+.+|++.+||.+|.++ +|.+|-+.+
T Consensus 236 ~i~~~~~~~~~eeNf~EA~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~~~~~g~lPl~G~lPD 315 (425)
T cd01493 236 LVRSLMRSNEDEENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEENGLLPLPGTLPD 315 (425)
T ss_pred HHHHhcccCCCccchHHHHHHHHHhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 01123455555332211 11 1235688999999999887 887775443
Q ss_pred -------------------cccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-c--------CCcccchhHHHHHHHH
Q 020565 233 -------------------IADLPAVLKLKKELCEANALNASHVTDSLLERLII-G--------TREFTPVCAVVGGILG 284 (324)
Q Consensus 233 -------------------~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~--------~~~l~p~~av~Ggi~a 284 (324)
..|.+++.+..+++.+..|.+.+.|+++.++.||+ + +.--+|++|++||++|
T Consensus 316 M~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~~~~~~~~~~~gg~~a 395 (425)
T cd01493 316 MTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRSLEHNISAFMGGIAA 395 (425)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCCcccchHHHHHhHHHH
Confidence 23666777777788888888888999999999997 4 2223899999999999
Q ss_pred HHHHHHHhcCCCcccceEEEeccCCceeEE
Q 020565 285 QEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314 (324)
Q Consensus 285 qEviK~itg~~~pl~~~~~~D~~~~~~~~~ 314 (324)
||+||+||+||.|++|+|+|||.++++.++
T Consensus 396 qE~iK~~t~q~vp~~n~~i~dg~~~~s~~~ 425 (425)
T cd01493 396 QEVIKLITKQYVPIDNTFIFDGIRSKSATF 425 (425)
T ss_pred HHHHHHHhccccccCCceEEeccccceecC
Confidence 999999999999999999999999987653
No 5
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=4.9e-53 Score=382.83 Aligned_cols=263 Identities=31% Similarity=0.477 Sum_probs=195.3
Q ss_pred HhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHH
Q 020565 13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV 92 (324)
Q Consensus 13 ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~ 92 (324)
+||||+++||.++|++|++++|+|+|+||+|+|+||||+++||++|+|+|+|.++.+||+|||+++++|+ |++|+++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea 77 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEA 77 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCc-
Q 020565 93 CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN- 171 (324)
Q Consensus 93 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~- 171 (324)
++++|+++||+++++++...+ ..+++++||+||+|.++.+.+.++|++||+ +++|||.+++.|++|++|+|+|+
T Consensus 78 ~~~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~~--~~ipfI~a~~~G~~G~vf~dfg~~ 152 (286)
T cd01491 78 SQARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCHS--PGIKFISADTRGLFGSIFCDFGDE 152 (286)
T ss_pred HHHHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHHH--cCCEEEEEeccccEEEEEecCCCe
Confidence 999999999999999987663 357889999999999999999999999999 99999999999999999999994
Q ss_pred eeeeecCcccccccc---cC-------------CCChHHhhccCcccCCCchhHHHHHHHHHHH--HHHHhCCCCCCCCc
Q 020565 172 HKYSKQKIEETIECQ---LR-------------YPSFEEAISVPWRALPRKASKLYFALRVLEQ--FEEAEGRSPGEISI 233 (324)
Q Consensus 172 ~~~~~~~~~~~~~~~---~~-------------f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~--f~~~~~~~p~~~~~ 233 (324)
|.+.+.+++++..|. +. -..+++.--..+.... -|-.|.. ..+..-.-|...+.
T Consensus 153 f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~--------gm~~lN~~~~~~v~~~~~~~f~i 224 (286)
T cd01491 153 FTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVE--------GMTELNGCEPRKIKVKGPYTFSI 224 (286)
T ss_pred EEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccC--------cchhhCCCccEEEEECCCCeEEE
Confidence 566655544322210 00 0001000000010000 0000000 00000011111111
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCc
Q 020565 234 ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGK 310 (324)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~ 310 (324)
.|...+-+ ..+.|+ + ...-++|++|++||++||||+|++||+|.|++|||+||+.++-
T Consensus 225 ~d~~~~~~-----y~~gG~-------------~-~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l 282 (286)
T cd01491 225 GDTSSFSE-----YIRGGI-------------V-TQVKLSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECL 282 (286)
T ss_pred CcCcCcCc-----cccCcE-------------E-EEEecccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhc
Confidence 12111100 001111 0 1112999999999999999999999999999999999998653
No 6
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=5e-50 Score=347.76 Aligned_cols=196 Identities=49% Similarity=0.789 Sum_probs=186.4
Q ss_pred HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (324)
Q Consensus 12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~ 91 (324)
+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.++.+|++||||++++|+ |++|++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~ 78 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAE 78 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCc
Q 020565 92 VCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN 171 (324)
Q Consensus 92 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~ 171 (324)
+++++|+++||+++++.+...+++...++++++|+||+|.++.+.+.++|++|++ +++|||++++.|++|++|+|+
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~d~-- 154 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRK--LGVKFYATGVHGLFGFVFADL-- 154 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEecCCEEEEEEec--
Confidence 9999999999999999998888766778899999999999999999999999999 999999999999999998421
Q ss_pred eeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 020565 172 HKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANA 251 (324)
Q Consensus 172 ~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~ 251 (324)
T Consensus 155 -------------------------------------------------------------------------------- 154 (197)
T cd01492 155 -------------------------------------------------------------------------------- 154 (197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEE
Q 020565 252 LNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314 (324)
Q Consensus 252 ~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~ 314 (324)
++|+++++|+++++|++|+++|+++|+.+++.||..+++++++
T Consensus 155 --------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~~~~~ 197 (197)
T cd01492 155 --------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSEAPIY 197 (197)
T ss_pred --------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCcCccC
Confidence 6788999999999999999999999998999999999988764
No 7
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-49 Score=363.31 Aligned_cols=304 Identities=27% Similarity=0.422 Sum_probs=261.1
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc
Q 020565 8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK 87 (324)
Q Consensus 8 ~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~ 87 (324)
.+...+||||+|+||.+||..|..++|+++|||++|+|++|||++.|||+||++|...|+.+|++.|||...+++ |+
T Consensus 4 ~~~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---Gk 80 (523)
T KOG2016|consen 4 SEPKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GK 80 (523)
T ss_pred cchhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---ch
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHhhCCCCeEeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565 88 TIAEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (324)
Q Consensus 88 ~ka~~~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~ 164 (324)
+||++..+.|+++||.|.-+......+. ...+++++|++||.+..+.+...++.++||. .++|++.+.++|+.|+
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~--~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILRE--ANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHh--cCCceEEEeeecceEE
Confidence 9999999999999999998887766553 4578899999999999999999999999999 9999999999999999
Q ss_pred EEEecCceeeeecCccccc-------------------------------------------------------------
Q 020565 165 IFVDLQNHKYSKQKIEETI------------------------------------------------------------- 183 (324)
Q Consensus 165 v~~d~~~~~~~~~~~~~~~------------------------------------------------------------- 183 (324)
++..+.+|++.+.+++.+.
T Consensus 159 iRI~ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk 238 (523)
T KOG2016|consen 159 IRISIKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKK 238 (523)
T ss_pred EEEEeeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 9999999988876654200
Q ss_pred ---------ccccCCCChHHhhccCccc----------------------------------------------------
Q 020565 184 ---------ECQLRYPSFEEAISVPWRA---------------------------------------------------- 202 (324)
Q Consensus 184 ---------~~~~~f~~~~e~l~~~~~~---------------------------------------------------- 202 (324)
.-.+.-++++||....|..
T Consensus 239 ~fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~G 318 (523)
T KOG2016|consen 239 EFKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRG 318 (523)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCC
Confidence 0011122333333222100
Q ss_pred -CCC----------------------------------------------------------------------------
Q 020565 203 -LPR---------------------------------------------------------------------------- 205 (324)
Q Consensus 203 -~~~---------------------------------------------------------------------------- 205 (324)
+|.
T Consensus 319 tlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~ 398 (523)
T KOG2016|consen 319 TLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSIT 398 (523)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccch
Confidence 000
Q ss_pred ------------chhHHHHHHHHHHHHHHHhCCCCCCC-CcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCc
Q 020565 206 ------------KASKLYFALRVLEQFEEAEGRSPGEI-SIADLPAVLKLKKELCEANALNASHVTDSLLERLII-GTRE 271 (324)
Q Consensus 206 ------------~~~~~~~~~~~l~~f~~~~~~~p~~~-~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 271 (324)
....+++++|++++|.+.+|++|+.. ...|...+..++..+....|.....|.++.+.++|| ...+
T Consensus 399 ~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaE 478 (523)
T KOG2016|consen 399 ELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAE 478 (523)
T ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCch
Confidence 00246789999999999999999843 257889999999999999999888999999999999 9999
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEEec
Q 020565 272 FTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDV 316 (324)
Q Consensus 272 l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~~~ 316 (324)
++.++|++||++||||||+||.+|.|++|.|+|||.+.++..+.|
T Consensus 479 lH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~~SaT~Kl 523 (523)
T KOG2016|consen 479 LHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQESATFKL 523 (523)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhceecccceeEecccccccceecC
Confidence 999999999999999999999999999999999999998877643
No 8
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.1e-48 Score=350.29 Aligned_cols=234 Identities=23% Similarity=0.347 Sum_probs=202.4
Q ss_pred CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di 82 (324)
+||++|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+
T Consensus 4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 83 (245)
T PRK05690 4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI 83 (245)
T ss_pred CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence 5899999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
|++|+++++++|+++||+++++.+...+++ ...++++++|+||+|+|+++.+.++|++|++ +++|+|++++.|+
T Consensus 84 ---G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~ 158 (245)
T PRK05690 84 ---GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFA--AKKPLVSGAAIRM 158 (245)
T ss_pred ---CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHH--hCCEEEEeeeccC
Confidence 999999999999999999999999888875 3467889999999999999999999999999 9999999999999
Q ss_pred eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565 162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (324)
Q Consensus 162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~ 240 (324)
.|++.+-.+. . ..+| +|.|+...+ . .
T Consensus 159 ~G~v~~~~~~----~-----~~~c~~c~~~~~~~-----------------------------------~----~----- 185 (245)
T PRK05690 159 EGQVTVFTYQ----D-----DEPCYRCLSRLFGE-----------------------------------N----A----- 185 (245)
T ss_pred CceEEEEecC----C-----CCceeeeccCCCCC-----------------------------------C----C-----
Confidence 9998742210 0 1244 333332100 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP 319 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~ 319 (324)
..|...|+ ++|+++++|+++|+|++|+|+|.+.|+.+ +++||..+++...+.+.+.
T Consensus 186 ----~~~~~~gv-------------------~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~~~ 242 (245)
T PRK05690 186 ----LTCVEAGV-------------------MAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLKRD 242 (245)
T ss_pred ----CCcccCCc-------------------cchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcCCC
Confidence 01222333 99999999999999999999999999876 9999999999988888654
No 9
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=7.1e-48 Score=334.69 Aligned_cols=192 Identities=35% Similarity=0.639 Sum_probs=180.6
Q ss_pred HhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCC--CCcccCCccHH
Q 020565 13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPP--DENVYGGKTIA 90 (324)
Q Consensus 13 ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~--~di~~~G~~ka 90 (324)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.++.+|++||||+++ +|+ |++|+
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka 77 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA 77 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 889 99999
Q ss_pred HHHHHHHHhhCCCCeEeEeeCCCC---CCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565 91 EVCCDSLKDFNPMVRVSVEKGDLS---SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 91 ~~~~~~l~~lnp~v~v~~~~~~~~---~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~ 167 (324)
++++++|+++||+++++.+...+. +...++++++|+||+|.++...+.++|++|++ +++|+|.+++.|++|++|+
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~ 155 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRK--HHIPFISCATYGLIGYAFF 155 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEEE
Confidence 999999999999999999887764 34577899999999999999999999999999 9999999999999999984
Q ss_pred ecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q 020565 168 DLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC 247 (324)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~ 247 (324)
|
T Consensus 156 ~------------------------------------------------------------------------------- 156 (198)
T cd01485 156 D------------------------------------------------------------------------------- 156 (198)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeE
Q 020565 248 EANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV 313 (324)
Q Consensus 248 ~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~ 313 (324)
+ |+++++|+++|+|++|+++|+++|+.++++||+.++++++
T Consensus 157 ------------------------~-p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~~~~~ 197 (198)
T cd01485 157 ------------------------F-PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFESTGPM 197 (198)
T ss_pred ------------------------h-hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccccCCC
Confidence 2 5689999999999999999999999889999999998864
No 10
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-47 Score=339.02 Aligned_cols=226 Identities=24% Similarity=0.339 Sum_probs=195.5
Q ss_pred CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccC
Q 020565 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~ 85 (324)
||+.|.+||+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+++|+|.++.+|++||+++.++|+
T Consensus 2 l~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv--- 78 (231)
T PRK08328 2 LSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL--- 78 (231)
T ss_pred CCHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc-cHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565 86 GK-TIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (324)
Q Consensus 86 G~-~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g 163 (324)
|+ +|+++++++|+++||+++++.+...+++ ...++++++|+||+|+|+++++..++++|++ +++|+|++++.|++|
T Consensus 79 G~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~--~~ip~i~g~~~g~~G 156 (231)
T PRK08328 79 GKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHK--KGIPLVHGAVEGTYG 156 (231)
T ss_pred CchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeeccCEE
Confidence 99 5999999999999999999998887764 4466889999999999999999999999999 999999999999999
Q ss_pred EEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 020565 164 EIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKL 242 (324)
Q Consensus 164 ~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~ 242 (324)
++.+..+.. .+| .+.||.. |.
T Consensus 157 ~v~~~~p~~----------~~c~~~~~~~~-----------------------------------~~------------- 178 (231)
T PRK08328 157 QVTTIVPGK----------TKRLREIFPKV-----------------------------------KK------------- 178 (231)
T ss_pred EEEEECCCC----------CCCHHHhCCCC-----------------------------------CC-------------
Confidence 998533210 122 1111110 00
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEec
Q 020565 243 KKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDV 316 (324)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~ 316 (324)
.+... +.++|+++++|+++|+|++|+|+|.++|+.+ +++||..+++..++.|
T Consensus 179 ---~~~~~-------------------~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 179 ---KKGKF-------------------PILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred ---ccccC-------------------CcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 00011 2399999999999999999999999999976 8999999998877654
No 11
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=6.5e-47 Score=359.87 Aligned_cols=235 Identities=21% Similarity=0.262 Sum_probs=204.7
Q ss_pred CCCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565 4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE 81 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d 81 (324)
..||+.|.+||+||+++ ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|
T Consensus 9 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~d 88 (390)
T PRK07411 9 IQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSW 88 (390)
T ss_pred ccCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHH
Confidence 46899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
+ |++|+++++++|+++||.++|+.+...++. +..++++++|+||+|+|+++++..+|++|++ .++|+|++++.|
T Consensus 89 v---G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g 163 (390)
T PRK07411 89 V---GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVL--LNKPNVYGSIFR 163 (390)
T ss_pred C---CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEcc
Confidence 9 999999999999999999999999988876 4567899999999999999999999999999 999999999999
Q ss_pred ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 020565 161 SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239 (324)
Q Consensus 161 ~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~ 239 (324)
++|++.+.... ..|| +|.||.. |.. +
T Consensus 164 ~~g~~~v~~~~----------~~~c~~c~~~~~-----------------------------------~~~----~---- 190 (390)
T PRK07411 164 FEGQATVFNYE----------GGPNYRDLYPEP-----------------------------------PPP----G---- 190 (390)
T ss_pred CEEEEEEECCC----------CCCChHHhcCCC-----------------------------------CCc----c----
Confidence 99998742110 1134 3333311 100 0
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565 240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~ 318 (324)
....|...|+ ++|+++++|+++|+|+||+|+|.+.|+.+ +++||+.+++...+.+.+
T Consensus 191 ---~~~~c~~~gv-------------------lg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~ 248 (390)
T PRK07411 191 ---MVPSCAEGGV-------------------LGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRP 248 (390)
T ss_pred ---cCCCCccCCc-------------------CcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccC
Confidence 0012444455 99999999999999999999999999876 999999999999999875
No 12
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.7e-46 Score=353.14 Aligned_cols=233 Identities=22% Similarity=0.269 Sum_probs=200.7
Q ss_pred CHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565 7 TEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY 84 (324)
Q Consensus 7 ~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~ 84 (324)
.++|.+||+||+++ ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++++|+
T Consensus 2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di-- 79 (355)
T PRK05597 2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV-- 79 (355)
T ss_pred ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC--
Confidence 45778999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565 85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (324)
Q Consensus 85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g 163 (324)
|++|+++++++|+++||+++++.+...++. +..++++++|+||+|+|++.++..+|++|++ +++|||++++.|+.|
T Consensus 80 -G~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~--~~ip~v~~~~~g~~g 156 (355)
T PRK05597 80 -GQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAAR--LGIPHVWASILGFDA 156 (355)
T ss_pred -CChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecCeE
Confidence 999999999999999999999999888875 4467889999999999999999999999999 999999999999999
Q ss_pred EEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 020565 164 EIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKL 242 (324)
Q Consensus 164 ~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~ 242 (324)
++.+..+. ..|| +|.||.. |.. .
T Consensus 157 ~v~~~~~~----------~~~~~~~~~~~~-----------------------------------~~~---~-------- 180 (355)
T PRK05597 157 QLSVFHAG----------HGPIYEDLFPTP-----------------------------------PPP---G-------- 180 (355)
T ss_pred EEEEEcCC----------CCCCHHHhCCCC-----------------------------------CCc---c--------
Confidence 99853211 0122 2222211 100 0
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565 243 KKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP 319 (324)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~ 319 (324)
....|...|+ ++|+++++|+++|.|+||+|||.+.|+.+ +++||..+++...+.+...
T Consensus 181 ~~~~c~~~gv-------------------~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~ 239 (355)
T PRK05597 181 SVPSCSQAGV-------------------LGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVGN 239 (355)
T ss_pred CCCCccccCc-------------------chhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEeccCC
Confidence 0012333444 99999999999999999999999999987 9999999999999998753
No 13
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.1e-46 Score=357.14 Aligned_cols=238 Identities=25% Similarity=0.379 Sum_probs=203.8
Q ss_pred CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di 82 (324)
.||++|.+||+||+++ ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+
T Consensus 14 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di 93 (392)
T PRK07878 14 ELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV 93 (392)
T ss_pred CCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC
Confidence 5999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
|++|+++++++|+++||+++++.+...++. +..++++++|+||+|+|++.++.++|++|++ +++|||++++.|+
T Consensus 94 ---G~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g~ 168 (392)
T PRK07878 94 ---GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVL--AGKPYVWGSIYRF 168 (392)
T ss_pred ---CChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccC
Confidence 999999999999999999999999888875 4467899999999999999999999999999 9999999999999
Q ss_pred eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565 162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (324)
Q Consensus 162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~ 240 (324)
+|++++..... +....+| +|.|+...+ +.
T Consensus 169 ~G~v~~~~~~~------~~~~~~c~~c~~~~~~~---------------------------------~~----------- 198 (392)
T PRK07878 169 EGQASVFWEDA------PDGLGLNYRDLYPEPPP---------------------------------PG----------- 198 (392)
T ss_pred EEEEEEEecCC------CCCCCCeeeeecCCCCC---------------------------------cc-----------
Confidence 99998532110 0001134 344431100 00
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~ 318 (324)
....|...|+ ++|+++++|+++|+|+||+|+|.++|+.+ +++||+.+++...+.+.+
T Consensus 199 --~~~~~~~~gv-------------------~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~ 256 (392)
T PRK07878 199 --MVPSCAEGGV-------------------LGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRK 256 (392)
T ss_pred --CCCCCccCCc-------------------cchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeecc
Confidence 0012333444 99999999999999999999999999876 999999999998888875
No 14
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=1.6e-46 Score=334.98 Aligned_cols=228 Identities=24% Similarity=0.341 Sum_probs=193.9
Q ss_pred HHHhHHHHHhh--hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565 11 TALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88 (324)
Q Consensus 11 ~~ry~Rqi~l~--g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ 88 (324)
++||+||+++| |.++|++|++++|+|+|+||+|++++++|+++|||+|+++|+|.|+.+||+||+++.++|+ |++
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~ 78 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQP 78 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCc
Confidence 57999999997 5799999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565 89 IAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 89 ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~ 167 (324)
|+++++++|+++||+++++.+...+++ +..++++++|+||+|+|+++++.++|++|++ +++|||++++.|+.|++.+
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~~G~v~~ 156 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFA--AKVPLVSGAAIRMEGQVSV 156 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEeEEEE
Confidence 999999999999999999999888875 4567889999999999999999999999999 9999999999999999763
Q ss_pred ecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q 020565 168 DLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKEL 246 (324)
Q Consensus 168 d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~ 246 (324)
+.+.. ..+| .|.++.+ |.. + ..
T Consensus 157 ----~~~~~-----~~~c~~C~~~~~-----------------------------------~~~----~---------~~ 179 (240)
T TIGR02355 157 ----FTYQD-----GEPCYRCLSRLF-----------------------------------GEN----A---------LS 179 (240)
T ss_pred ----EecCC-----CCCccccccccC-----------------------------------CCC----C---------CC
Confidence 11111 1133 2221111 000 0 00
Q ss_pred HHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565 247 CEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP 319 (324)
Q Consensus 247 ~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~ 319 (324)
|...+ .++|+++++|+++|+|++|+|+|.++|+.+ ++.||..+++...+.+.+.
T Consensus 180 ~~~~g-------------------v~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~~~ 234 (240)
T TIGR02355 180 CVEAG-------------------VMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLPKN 234 (240)
T ss_pred ccccC-------------------ccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEeccCC
Confidence 11223 399999999999999999999999999876 9999999999999988764
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.5e-46 Score=335.06 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=200.2
Q ss_pred HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565 11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka 90 (324)
.+||+||+.++|.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|+ |++|+
T Consensus 7 ~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~Kv 83 (287)
T PRK08223 7 DEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRPKA 83 (287)
T ss_pred HHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCcHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565 91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~ 167 (324)
++++++++++||+++|+++...+++ +..++++++|+||+|+|++ +++.++|+.|++ +++|+|++++.|+.|++.+
T Consensus 84 e~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~--~~iP~V~~~~~g~~gqv~v 161 (287)
T PRK08223 84 EVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ--RGIPALTAAPLGMGTALLV 161 (287)
T ss_pred HHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--cCCCEEEEeccCCeEEEEE
Confidence 9999999999999999999998876 5678899999999999986 899999999999 9999999999999999875
Q ss_pred ecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q 020565 168 DLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKEL 246 (324)
Q Consensus 168 d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~ 246 (324)
-.+. .|| ++.||..++.- +... ..+ ..|+ ....
T Consensus 162 ~~p~-----------~p~~~~~f~~~~~~~--~~~~----------~~~----------~~~~-------------~~p~ 195 (287)
T PRK08223 162 FDPG-----------GMSFDDYFDLSDGMN--EVEK----------AVR----------FLAG-------------LAPS 195 (287)
T ss_pred EcCC-----------CCchhhhcCCCCCCC--chhh----------hcc----------cCCc-------------CCCc
Confidence 3210 133 44444321100 0000 000 0000 0001
Q ss_pred HHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcc-c-ceEEEeccCCceeEEecCC
Q 020565 247 CEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPL-K-NFFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 247 ~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl-~-~~~~~D~~~~~~~~~~~~~ 318 (324)
|...|+- .+...+ .+-+ ..|..++++.++|+++|.|+||+|+|.++++ . .+++||+.++......++.
T Consensus 196 c~~~gvl---~~~~~~-~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~~~~~~~~~~ 266 (287)
T PRK08223 196 MLHRGYL---ADPSRV-DLENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRSRYVRTWRPG 266 (287)
T ss_pred cccCCcc---cccccc-ccccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCceEEEEEecC
Confidence 2222321 011111 1223 5667899999999999999999999999996 4 4999999999887777653
No 16
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.2e-45 Score=348.05 Aligned_cols=238 Identities=22% Similarity=0.318 Sum_probs=203.0
Q ss_pred CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di 82 (324)
++|+.|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||++++++|+
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di 92 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV 92 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence 4889999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
|++|+++++++|+++||+++++.+...+++ +..++++++|+||+|+|+++++..+|++|++ +++|+|++++.|+
T Consensus 93 ---G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~--~~iP~v~~~~~g~ 167 (370)
T PRK05600 93 ---GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEI--TGTPLVWGTVLRF 167 (370)
T ss_pred ---CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecC
Confidence 999999999999999999999999988875 4567899999999999999999999999999 9999999999999
Q ss_pred eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565 162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (324)
Q Consensus 162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~ 240 (324)
.|++.+... ... ...+| .+.||.. |.. .
T Consensus 168 ~G~v~v~~~----~~~---~~~~~~~~l~~~~-----------------------------------~~~---~------ 196 (370)
T PRK05600 168 HGELAVFNS----GPD---HRGVGLRDLFPEQ-----------------------------------PSG---D------ 196 (370)
T ss_pred EEEEEEEec----CCC---CCCCCcHhhCCCC-----------------------------------Ccc---c------
Confidence 999874211 000 00122 2223211 000 0
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP 319 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~ 319 (324)
....|...|+ ++|+++++|+++|+|++|+|+|.++|+.+ ++.||+.+++...+.+.+.
T Consensus 197 --~~~~c~~~gv-------------------lg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~~~~ 255 (370)
T PRK05600 197 --SIPDCATAGV-------------------LGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRVGAD 255 (370)
T ss_pred --cCCCCccCCc-------------------chhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEecCC
Confidence 0001223333 99999999999999999999999999887 9999999999999988753
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.2e-45 Score=328.26 Aligned_cols=223 Identities=25% Similarity=0.393 Sum_probs=190.4
Q ss_pred HhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565 13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (324)
Q Consensus 13 ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka 90 (324)
||+||+++ ||.++|++|++++|+|+||||+|++++++|+++||++|+|+|+|.|+++|++||+|+.++|+ |++|+
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka 77 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA 77 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence 79999999 99999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEec
Q 020565 91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169 (324)
Q Consensus 91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~ 169 (324)
++++++|+++||+++++.+...++. ...++++++|+||+|.|+++.+.+++++|++ +++|+|++++.|+.|++....
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~--~~ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVK--LGKPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEeccCEEEEEEEC
Confidence 9999999999999999999888754 4467889999999999999999999999999 999999999999999987432
Q ss_pred CceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHH
Q 020565 170 QNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCE 248 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~~ 248 (324)
+. ..+| .|.|+.. |. ++ ...+.
T Consensus 156 p~----------~~~c~~c~~~~~-----------------------------------~~----~~--------~~~~~ 178 (228)
T cd00757 156 PG----------EGPCYRCLFPEP-----------------------------------PP----PG--------VPSCA 178 (228)
T ss_pred CC----------CCCCccccCCCC-----------------------------------CC----CC--------CCccc
Confidence 21 1123 2222211 00 00 00011
Q ss_pred HcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEec
Q 020565 249 ANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDV 316 (324)
Q Consensus 249 ~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~ 316 (324)
..+.++|+++++|+++|+|++|+|+|..+|+.+ +++||..+++...+++
T Consensus 179 -------------------~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 179 -------------------EAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred -------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 234599999999999999999999999988765 9999999999887764
No 18
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.8e-43 Score=330.07 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=194.5
Q ss_pred HHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc--
Q 020565 12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK-- 87 (324)
Q Consensus 12 ~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~-- 87 (324)
+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||+++.++|+ |+
T Consensus 3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di---g~g~ 79 (339)
T PRK07688 3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV---KNNL 79 (339)
T ss_pred chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh---cCCC
Confidence 699999998 99999999999999999999999999999999999999999999999999999999999999 75
Q ss_pred cHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 88 TIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 88 ~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
+|+++++++++++||+++++.+...++. +..++++++|+||+|+|+++++..+|++|++ .++|+|++++.|++|+++
T Consensus 80 ~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~--~~iP~i~~~~~g~~G~~~ 157 (339)
T PRK07688 80 PKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK--YGIPWIYGACVGSYGLSY 157 (339)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeeeeeeeEEE
Confidence 9999999999999999999999888765 4567889999999999999999999999999 999999999999999977
Q ss_pred EecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 020565 167 VDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKE 245 (324)
Q Consensus 167 ~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~ 245 (324)
+..+. ..+| +|.|+.. |... .
T Consensus 158 ~~~p~----------~~pC~~Cl~~~~-----------------------------------~~~~-------------~ 179 (339)
T PRK07688 158 TIIPG----------KTPCLRCLLQSI-----------------------------------PLGG-------------A 179 (339)
T ss_pred EECCC----------CCCCeEeecCCC-----------------------------------CCCC-------------C
Confidence 43211 1245 3444332 1000 0
Q ss_pred HHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecC
Q 020565 246 LCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVS 317 (324)
Q Consensus 246 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~ 317 (324)
.|...|+ ++|+++++|+++|+|++|+|+|.+.++.+ ++.||..+++...+.+.
T Consensus 180 ~c~~~gv-------------------~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~ 233 (339)
T PRK07688 180 TCDTAGI-------------------ISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQ 233 (339)
T ss_pred CCccCCc-------------------ccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEec
Confidence 1233344 99999999999999999999999999886 88999999999888775
No 19
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=3e-43 Score=328.36 Aligned_cols=227 Identities=22% Similarity=0.333 Sum_probs=194.4
Q ss_pred HHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccH
Q 020565 12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI 89 (324)
Q Consensus 12 ~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k 89 (324)
+||+||+++ ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|.|.|+.+||+||+++.++|+ ..|++|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~K 81 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKPK 81 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCccH
Confidence 699999998 89999999999999999999999999999999999999999999999999999999999997 114899
Q ss_pred HHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEe
Q 020565 90 AEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD 168 (324)
Q Consensus 90 a~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d 168 (324)
+++++++|+++||+++++.+..+++. ..+++++++|+||+|+|+++++..+|++|++ +++|+|++++.|++|++++.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~--~~ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK--YNIPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEEEEEEE
Confidence 99999999999999999998887764 4567889999999999999999999999999 99999999999999998753
Q ss_pred cCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q 020565 169 LQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC 247 (324)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~ 247 (324)
.+. ..|| .|.|+.. |... ..|
T Consensus 160 ~P~----------~tpC~~Cl~~~~-----------------------------------p~~~-------------~~c 181 (338)
T PRK12475 160 IPG----------KTPCLRCLMEHV-----------------------------------PVGG-------------ATC 181 (338)
T ss_pred CCC----------CCCCHHHhcCCC-----------------------------------CCCC-------------CCC
Confidence 221 1244 3333211 1100 012
Q ss_pred HHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565 248 EANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 248 ~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~ 318 (324)
...|+ ++|+.+++|+++|.|++|+|+|...++.+ ++.||.++++...+.++.
T Consensus 182 ~~~Gv-------------------l~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~ 234 (338)
T PRK12475 182 DTAGI-------------------IQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNK 234 (338)
T ss_pred ccCCc-------------------CchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEecc
Confidence 33344 99999999999999999999999999886 889999999998888854
No 20
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.8e-44 Score=319.37 Aligned_cols=237 Identities=26% Similarity=0.347 Sum_probs=213.4
Q ss_pred CCCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565 4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE 81 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d 81 (324)
..||.+|..||+||+.+ +|..||.+|++++||||||||+||.++..|+.+|||.+-|||.|+|+.+|+.||.+.+++.
T Consensus 37 ~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~ 116 (427)
T KOG2017|consen 37 AGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEAR 116 (427)
T ss_pred cCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhh
Confidence 46999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
+ |+.|+++++..++++||+++|+.+.+.++. ++.+++++||+|++|+||+.+|+.|++.|.. .++|++++.+.+
T Consensus 117 v---g~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVl--LgkpLVSgSaLr 191 (427)
T KOG2017|consen 117 V---GMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVL--LGKPLVSGSALR 191 (427)
T ss_pred h---hhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHH--cCCccccccccc
Confidence 9 999999999999999999999999999885 7788999999999999999999999999999 999999999999
Q ss_pred ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 020565 161 SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239 (324)
Q Consensus 161 ~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~ 239 (324)
+.|++-+ |.|.. -|| +|.||+- |. .+
T Consensus 192 ~EGQLtv----Yny~~------GPCYRClFP~P-----------------------------------pp------~~-- 218 (427)
T KOG2017|consen 192 WEGQLTV----YNYNN------GPCYRCLFPNP-----------------------------------PP------PE-- 218 (427)
T ss_pred ccceeEE----eecCC------CceeeecCCCC-----------------------------------cC------hH--
Confidence 9999864 44422 377 7777643 11 11
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565 240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~ 318 (324)
+-..|.+.|+ ++|++.++|.|+|-|+||+++|-++++.. +++||+.++....+.+-+
T Consensus 219 ---~vt~C~dgGV-------------------lGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~irlR~ 276 (427)
T KOG2017|consen 219 ---AVTNCADGGV-------------------LGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRLRS 276 (427)
T ss_pred ---HhcccccCce-------------------eecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEEecc
Confidence 2335666777 99999999999999999999999999986 999999999988888875
Q ss_pred CC
Q 020565 319 PK 320 (324)
Q Consensus 319 ~~ 320 (324)
.+
T Consensus 277 r~ 278 (427)
T KOG2017|consen 277 RR 278 (427)
T ss_pred CC
Confidence 43
No 21
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=1.8e-43 Score=308.30 Aligned_cols=150 Identities=24% Similarity=0.389 Sum_probs=144.2
Q ss_pred HhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565 13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (324)
Q Consensus 13 ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka 90 (324)
|||||+++ ||.++|++|++++|+|+|+||+|++++++|+++|+++++++|+|.|+.+||+||++++++|+ |++|+
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka 77 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV 77 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence 79999999 99999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565 91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~ 167 (324)
++++++|+++||+++++.+...+++ ...++++++|+||+|+|+.+.+.++|++|++ +++|||.+++.|++|++++
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~--~~ip~i~~~~~g~~G~~~~ 153 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVA--LGTPLISAAVVGFGGQLMV 153 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccCeEEEEE
Confidence 9999999999999999999888765 3467889999999999999999999999999 9999999999999999985
No 22
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=4e-42 Score=326.72 Aligned_cols=239 Identities=23% Similarity=0.341 Sum_probs=202.5
Q ss_pred CCCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565 4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE 81 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d 81 (324)
..++.+|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||++++++|
T Consensus 106 ~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~d 185 (376)
T PRK08762 106 RLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR 185 (376)
T ss_pred cCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhh
Confidence 35788899999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
+ |++|+++++++|+++||.++++.+...+++ ...++++++|+||+|+|+++.+.++|++|++ +++|+|++++.|
T Consensus 186 i---G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~--~~ip~i~~~~~g 260 (376)
T PRK08762 186 V---GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVK--LGKPLVYGAVFR 260 (376)
T ss_pred C---CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEecc
Confidence 9 999999999999999999999998877765 4466789999999999999999999999999 999999999999
Q ss_pred ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 020565 161 SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239 (324)
Q Consensus 161 ~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~ 239 (324)
+.|++.+..+... +...+| .|.|+.. |.. .
T Consensus 261 ~~g~v~~~~p~~~------~~~~~c~~c~~~~~-----------------------------------~~~---~----- 291 (376)
T PRK08762 261 FEGQVSVFDAGRQ------RGQAPCYRCLFPEP-----------------------------------PPP---E----- 291 (376)
T ss_pred CEEEEEEEeCCCC------CCCCCCHhhcCCCC-----------------------------------CCc---c-----
Confidence 9999885322100 001244 3333311 000 0
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565 240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~ 318 (324)
....|...|+ ++|+++++|+++|+|++|+|+|.++|+.+ +++||..+++...+.+.+
T Consensus 292 ---~~~~~~~~gv-------------------~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~ 349 (376)
T PRK08762 292 ---LAPSCAEAGV-------------------LGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRELRLPP 349 (376)
T ss_pred ---cCCCCccCCc-------------------chhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEeccC
Confidence 0001333344 99999999999999999999999999876 999999999999888865
No 23
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.3e-40 Score=302.15 Aligned_cols=266 Identities=21% Similarity=0.259 Sum_probs=206.2
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
||+|+|+||+|||++|+|+++|||+|+|+|.|.|+.+||+|||||+++|+ |++||++++++|+++||.++++.+...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhcc------CCccEEEeeecCceEEEEEecCcee--e---eecCccc
Q 020565 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS------KRVAFYTVDCRDSCGEIFVDLQNHK--Y---SKQKIEE 181 (324)
Q Consensus 113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~------~~ip~i~~~~~G~~g~v~~d~~~~~--~---~~~~~~~ 181 (324)
+.+...++++++|+||+|.|+.+.|.++|+.|.++. .++|+|.+++.|+.|++.+.++..+ + .+..++.
T Consensus 78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~ 157 (291)
T cd01488 78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ 157 (291)
T ss_pred cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC
Confidence 887778999999999999999999999999876521 3599999999999999988776432 1 1111111
Q ss_pred -cc-cccc-CCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCC-CCCCcccHHHHHHHHHHHHHHcCCCCCCC
Q 020565 182 -TI-ECQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSP-GEISIADLPAVLKLKKELCEANALNASHV 257 (324)
Q Consensus 182 -~~-~~~~-~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p-~~~~~~d~~~~~~~~~~~~~~~~~~~~~v 257 (324)
.. -|++ .+|+..+ +.+.|.+.- .|.+.+...+ ...+.+..+-+++.+++..+.+++ ..+
T Consensus 158 ~~~p~Cti~~~P~~~~-hci~~a~~~--------------~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i--~~~ 220 (291)
T cd01488 158 VTFPLCTIANTPRLPE-HCIEYASLI--------------QWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNI--SGV 220 (291)
T ss_pred CCCCcccccCCCCCcc-hheeeeeee--------------ecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCC--Ccc
Confidence 11 1332 2333322 333343320 1222221111 111222233345667777777777 468
Q ss_pred CHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce-eEEecCC
Q 020565 258 TDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG-VVEDVSS 318 (324)
Q Consensus 258 ~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~-~~~~~~~ 318 (324)
+..++..++. .-|.+++++|++|+.++.|++|++|+...+++||+.|.+.++.. ..+.+.+
T Consensus 221 ~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~~~ 283 (291)
T cd01488 221 TYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHER 283 (291)
T ss_pred cHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEEee
Confidence 8899999998 99999999999999999999999999999999999999998743 4555444
No 24
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=1e-38 Score=288.35 Aligned_cols=236 Identities=29% Similarity=0.451 Sum_probs=201.2
Q ss_pred CCCHHHHHHhHHHHHhhhH--HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565 5 ELTEQETALYDRQIRVWGA--DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l~g~--~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di 82 (324)
.+++.+.+||+||+++|+. ++|++|++++|+|+|+||+|++++++|+++|||+++++|+|.|+.+||+||++++++|+
T Consensus 2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 4789999999999999754 45999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
|++|++++++.++++||.+++..+...++. ...++++++|+|++|+|+++++..+|++|++ .++|++++++.|+
T Consensus 82 ---g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~--~~~pli~~~~~~~ 156 (254)
T COG0476 82 ---GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVK--LGIPLVHGGAIGF 156 (254)
T ss_pred ---CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHH--hCCCeEeeeeccc
Confidence 999999999999999999999999988876 4468899999999999999999999999999 9999999999999
Q ss_pred eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565 162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (324)
Q Consensus 162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~ 240 (324)
+|+++++.+.. +.+| +|.||.... ++.
T Consensus 157 ~g~~~~~~~~~---------~~~c~~~~~~~~~~---------------------------------~~~---------- 184 (254)
T COG0476 157 EGQVTVIIPGD---------KTPCYRCLFPEKPP---------------------------------PGL---------- 184 (254)
T ss_pred eEEEEEEecCC---------CCCcccccCCCCCC---------------------------------ccc----------
Confidence 99999766532 1244 334433210 000
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCC-Ccccc-eEEEeccCC-ceeEEecC
Q 020565 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKG-EPLKN-FFFFDIMDG-KGVVEDVS 317 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~-~pl~~-~~~~D~~~~-~~~~~~~~ 317 (324)
....|...++ +.|++.++|.+++.|++|.++|.+ .|+.+ .+.||..++ ......+.
T Consensus 185 --~~~~c~~~gv-------------------~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (254)
T COG0476 185 --VPTSCDEAGV-------------------LGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLKLR 243 (254)
T ss_pred --cccccccCCc-------------------cccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhhcc
Confidence 0013555555 999999999999999999999999 88665 999999998 55555444
Q ss_pred C
Q 020565 318 S 318 (324)
Q Consensus 318 ~ 318 (324)
+
T Consensus 244 ~ 244 (254)
T COG0476 244 R 244 (254)
T ss_pred c
Confidence 4
No 25
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.9e-37 Score=282.28 Aligned_cols=259 Identities=19% Similarity=0.293 Sum_probs=190.6
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|+|+|+||+|||++|||+++|||+|+|+|.|.++.+||+|||+++++|+ |++|+++++++++++||+++++.+...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999888
Q ss_pred CCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCcee-eee-cCccc---cccc
Q 020565 113 LSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHK-YSK-QKIEE---TIEC 185 (324)
Q Consensus 113 ~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~~~-~~~-~~~~~---~~~~ 185 (324)
+.+ ...++++++|+||+|.|+.+.+.++|++|+. +++|||.+++.|+.|+++++++..+ ..+ ..++. ..-|
T Consensus 78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~--~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pic 155 (312)
T cd01489 78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLA--ADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC 155 (312)
T ss_pred CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcc
Confidence 875 3468899999999999999999999999999 9999999999999999999997432 222 11111 1112
Q ss_pred cc-CCCChHHhhccCcccCC-CchhHH-HHHHH---HHHHHHHHhCCCCCC-------CCcccHH---HHHHHHHHHHHH
Q 020565 186 QL-RYPSFEEAISVPWRALP-RKASKL-YFALR---VLEQFEEAEGRSPGE-------ISIADLP---AVLKLKKELCEA 249 (324)
Q Consensus 186 ~~-~f~~~~e~l~~~~~~~~-~~~~~~-~~~~~---~l~~f~~~~~~~p~~-------~~~~d~~---~~~~~~~~~~~~ 249 (324)
++ .+|+.. .+...|.+.- .....+ +--++ ....|++.. +.|.+ .+.+|-. -+.+.++..+..
T Consensus 156 tI~~~p~~~-~hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~~-~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~~ 233 (312)
T cd01489 156 TIRSTPSQP-IHCIVWAKSLFFLFNKVFKDDIERLLSMEELWKTR-KPPVPLSWKELTFDKDDQDALDFVAAAANLRSHV 233 (312)
T ss_pred eecCCCCCC-EeehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 22 222211 1222333210 000000 00000 012233322 22321 2222222 233445666666
Q ss_pred cCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccc
Q 020565 250 NALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300 (324)
Q Consensus 250 ~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~ 300 (324)
++++ .++...++.++. .-|.++.+.|+++|++..|++|+++++..-.++
T Consensus 234 f~I~--~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~ 283 (312)
T cd01489 234 FGIP--MKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRT 283 (312)
T ss_pred cCCC--CCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 7775 477788899998 899999999999999999999999998766666
No 26
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.6e-36 Score=268.53 Aligned_cols=226 Identities=19% Similarity=0.273 Sum_probs=181.9
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
||+|+|+||+|||++|+|+++|+|+|+++|.|.|+.+||+|||||+++|+ |++|+++++++++++||+++++.+...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999888
Q ss_pred CCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCceeeeecCccccccc-ccC
Q 020565 113 LSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEC-QLR 188 (324)
Q Consensus 113 ~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~~~~~~~~~~~~~~~-~~~ 188 (324)
+.+ ...++++++|+||+|.|+.+.|.++|++|++ .++|+|++++.|+.|++.+..+..+ +| .|.
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~--~~iplI~~g~~G~~G~v~vi~p~~t----------~c~~C~ 145 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIF--LIVPLIESGTEGFKGNAQVILPGMT----------ECIECT 145 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcccCCceEEEEEcCCCC----------CCcccC
Confidence 843 3467899999999999999999999999999 9999999999999999987655311 22 222
Q ss_pred CCChHHhhccCc---ccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 020565 189 YPSFEEAISVPW---RALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERL 265 (324)
Q Consensus 189 f~~~~e~l~~~~---~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 265 (324)
+++-.+ ..|. ...|+. +.|....+...|+ .+....+-+.+.++...+.++++ .++..+++.+
T Consensus 146 ~~~~~~--~~p~Cti~~~P~~--~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~i~--~~~~~~~~~i 210 (234)
T cd01484 146 LYPPQK--NFPMCTIASMPRL--PEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYNIR--GVTYFLTKGV 210 (234)
T ss_pred CCCCCC--CCCccccCCCCCC--chHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCC--CcCHHHHHHH
Confidence 211111 1111 111221 2344444554444 12344556677788888888885 5888999999
Q ss_pred Hh-cCCcccchhHHHHHHHHHHHH
Q 020565 266 II-GTREFTPVCAVVGGILGQEVI 288 (324)
Q Consensus 266 ~~-~~~~l~p~~av~Ggi~aqEvi 288 (324)
+. .-|.++.+.|+++|+++.|++
T Consensus 211 ~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 211 AGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred hcCeecchhhHHHHHHHHHHHhhC
Confidence 98 999999999999999999873
No 27
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=265.99 Aligned_cols=280 Identities=20% Similarity=0.281 Sum_probs=217.9
Q ss_pred hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565 22 GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (324)
Q Consensus 22 g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln 101 (324)
+.+..+-|.+.+|||||+||+|||++|||+++|++.++++|-|.++.+||||||+|++.|+ |++||+++++.+++..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rv 107 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRV 107 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhC
Confidence 6788899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCC--------ccEEEeeecCceEEEEEecCcee
Q 020565 102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--------VAFYTVDCRDSCGEIFVDLQNHK 173 (324)
Q Consensus 102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~--------ip~i~~~~~G~~g~v~~d~~~~~ 173 (324)
|.+.|..+..++.+...+|+++|++||++.|+.+.|+|||....++... ||+|++++.|+.|++.+.++.++
T Consensus 108 p~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~T 187 (422)
T KOG2015|consen 108 PGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGIT 187 (422)
T ss_pred CCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCcc
Confidence 9999999999999999999999999999999999999999876543222 79999999999999998877543
Q ss_pred eeecCccccccccc-CCCChHHhhccCcc---cCCCchhHHHHHHHHHHHHHHHhCC-CCCC-CCcccHHHHHHHHHHHH
Q 020565 174 YSKQKIEETIECQL-RYPSFEEAISVPWR---ALPRKASKLYFALRVLEQFEEAEGR-SPGE-ISIADLPAVLKLKKELC 247 (324)
Q Consensus 174 ~~~~~~~~~~~~~~-~f~~~~e~l~~~~~---~~~~~~~~~~~~~~~l~~f~~~~~~-~p~~-~~~~d~~~~~~~~~~~~ 247 (324)
- +..|.+ .||+- .+.|.. ++|+-+ ....=+..+.+|.+...- .|.. .+.++.+-+++-+.+..
T Consensus 188 a-------CieCtldlyppq---vs~P~CTiAntPRlp-EHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA 256 (422)
T KOG2015|consen 188 A-------CIECTLDLYPPQ---VSYPMCTIANTPRLP-EHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERA 256 (422)
T ss_pred H-------HHHhHHhhcCcc---cCcccceecCCCCCc-hHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 2 223422 34432 122322 233222 222223344455554322 2211 12233333444444444
Q ss_pred HHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce-eEEecC
Q 020565 248 EANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG-VVEDVS 317 (324)
Q Consensus 248 ~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~-~~~~~~ 317 (324)
.+.. ...|+..++..+.+ .-|.++.++|++++.+|.|++|++|.-..|++||+.|++.++-. ..+.+.
T Consensus 257 ~ef~--I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~e 326 (422)
T KOG2015|consen 257 NEFN--ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLE 326 (422)
T ss_pred hhcc--cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeeec
Confidence 4343 45688888888888 88999999999999999999999999999999999999999843 555554
No 28
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=308.76 Aligned_cols=247 Identities=15% Similarity=0.206 Sum_probs=190.4
Q ss_pred HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565 11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka 90 (324)
..||+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+|||||++++.+|+ |++|+
T Consensus 312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dI---G~~Ka 388 (989)
T PRK14852 312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASF---GRGKL 388 (989)
T ss_pred HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhC---CChHH
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565 91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~ 167 (324)
++++++++++||+++|+++...+++ +.+++++++|+||+|+|++ +.+..+++.|++ ++||+|++++.|+.|++++
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~--~~IP~I~ag~~G~~g~v~v 466 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALE--LGIPVITAGPLGYSCALLV 466 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHH--cCCCEEEeeccccCeeEEE
Confidence 9999999999999999999888865 5688999999999999974 467788899999 9999999999999999986
Q ss_pred ecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q 020565 168 DLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC 247 (324)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~ 247 (324)
..+. . +| +++... ++...+..+-+++.+. +.-|.. - -
T Consensus 467 ~~p~----~-------~~------~~~~f~-----~~~~~p~~~~~~~~~l------~~~p~~-------~----~---- 503 (989)
T PRK14852 467 FMPG----G-------MN------FDSYFG-----IDDDTPPMEGYLRFGM------GLAPRP-------A----H---- 503 (989)
T ss_pred EcCC----C-------CC------HHHhCC-----CCCCCchHhhhhhhhc------cCCcch-------h----h----
Confidence 3321 0 11 221111 0011122222222100 111100 0 0
Q ss_pred HHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcc--cceEEEeccCCcee
Q 020565 248 EANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPL--KNFFFFDIMDGKGV 312 (324)
Q Consensus 248 ~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl--~~~~~~D~~~~~~~ 312 (324)
. ..++...+ .+.. ..|++++-|.+-||++|.|++|++.|++.-. .-++.||+..+...
T Consensus 504 --~----~~~~~~~~-~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~qfd~~~~~~~ 564 (989)
T PRK14852 504 --L----GYMDRRFV-SLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFRQFDPLTGRHV 564 (989)
T ss_pred --h----cccCcccc-cccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchhccchhhcccc
Confidence 0 00111111 2223 7889999999999999999999999996543 35788999887543
No 29
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=301.18 Aligned_cols=256 Identities=19% Similarity=0.249 Sum_probs=198.3
Q ss_pred CHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCC
Q 020565 7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG 86 (324)
Q Consensus 7 ~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G 86 (324)
.+.+.+||+||+++||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+|||||++++.+|+ |
T Consensus 19 ~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G 95 (679)
T PRK14851 19 AEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---G 95 (679)
T ss_pred HHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---C
Confidence 4556799999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCC--HHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565 87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (324)
Q Consensus 87 ~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~--~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g 163 (324)
++|+++++++++++||.++|+.+...+++ +..++++++|+||+|.|+ .+.+..+++.|++ ++||+|++++.|+.|
T Consensus 96 ~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~~G~~g 173 (679)
T PRK14851 96 RPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGPLGYSS 173 (679)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeecccccc
Confidence 99999999999999999999999998886 457889999999999997 4678899999999 999999999999999
Q ss_pred EEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 020565 164 EIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLK 243 (324)
Q Consensus 164 ~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~ 243 (324)
++++..+. . +.+++.....-. ++ ..--.+| | .+|-.|...
T Consensus 174 ~~~~~~p~----~-------------~~~~~~~~~~~~-~~----~~~~~~~----~--~~g~~p~~~------------ 213 (679)
T PRK14851 174 AMLVFTPQ----G-------------MGFDDYFNIGGK-MP----EEQKYLR----F--AMGLAPRPT------------ 213 (679)
T ss_pred eEEEEcCC----C-------------CCHhHhccCCCC-CC----hHHHHHH----H--HhcCCCcch------------
Confidence 99853321 0 111111111000 00 0000000 0 112222110
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCc--ccceEEEeccCCceeEEecC
Q 020565 244 KELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEP--LKNFFFFDIMDGKGVVEDVS 317 (324)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~p--l~~~~~~D~~~~~~~~~~~~ 317 (324)
--..+|...+ .+.. ..+.+..-|...+|+.+.|++|+|.|++.- ..++++||+..+....-.++
T Consensus 214 ---------~~~~~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~ 280 (679)
T PRK14851 214 ---------HIKYMDLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLRPVPCYLQFDPFLQKLRKGRLS 280 (679)
T ss_pred ---------hhccCcHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeeeccchhhhcchhhcceeEEEee
Confidence 0012333344 3444 667788889999999999999999988743 45899999988876555544
No 30
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=2e-35 Score=259.09 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=136.4
Q ss_pred HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (324)
Q Consensus 12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~ 91 (324)
+.|.++...||.++|++|++++|+|+|+||+|++++++|+++||++|+++|.|.|+.+||+||+++ ++|+ |++|++
T Consensus 9 ~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka~ 84 (212)
T PRK08644 9 EFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKVE 84 (212)
T ss_pred HHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHHH
Confidence 466777788999999999999999999999999999999999999999999999999999999876 7789 999999
Q ss_pred HHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccC-CccEEEeeecCceEEEE
Q 020565 92 VCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 92 ~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~-~ip~i~~~~~G~~g~v~ 166 (324)
+++++|+++||+++++.+...+++ ...++++++|+||+|+|+++.+..+++.|++ + ++|+|.+...|.+|++.
T Consensus 85 ~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~--~~~~p~I~~~~~~~~~~~~ 159 (212)
T PRK08644 85 ALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLE--HPGKKLVAASGMAGYGDSN 159 (212)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH--hCCCCEEEeehhhccCCce
Confidence 999999999999999999888775 3457889999999999999999999999999 8 99999997777666543
No 31
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=4.6e-35 Score=270.76 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=185.3
Q ss_pred CCCHHHHHHhHHHHHh---hh-HHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCC
Q 020565 5 ELTEQETALYDRQIRV---WG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD 80 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l---~g-~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~ 80 (324)
+|++.+.+||+||+.+ || .++|++|++++|+ |||+|+.++.+|++ |||+|+|+|+|.|+.+||+ ++|+++
T Consensus 46 ~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~ 119 (318)
T TIGR03603 46 TLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKE 119 (318)
T ss_pred ccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChh
Confidence 5888999999999999 56 4589999999999 99999999999999 9999999999999999999 999999
Q ss_pred CcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHH--HHHHHHhccCCccEEEeee
Q 020565 81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKL--INEKCRKLSKRVAFYTVDC 158 (324)
Q Consensus 81 di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~--l~~~~~~~~~~ip~i~~~~ 158 (324)
|+ |++|+++++++|.++||.++++.. .++++++|+||+|+|++.++.. +|++|.+ .++|||.++.
T Consensus 120 di---G~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~--~~~PlV~gav 186 (318)
T TIGR03603 120 FI---LKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSKE--TKKPNTIAFI 186 (318)
T ss_pred hc---CcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHHH--HCCCEEEEEE
Confidence 99 999999999999999999999763 4678899999999999999865 9999999 9999999999
Q ss_pred cCceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHH
Q 020565 159 RDSCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLP 237 (324)
Q Consensus 159 ~G~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~ 237 (324)
.|+.|++...++. ..+| +|.||....... |..+|... ....+
T Consensus 187 ~g~~Gqv~~~~P~----------~t~C~~Cl~~r~~~~~~--------------------------~~~~~~~~-~~~~~ 229 (318)
T TIGR03603 187 DGPFVFITCTLPP----------ETGCFECLERRLLSRLD--------------------------WRLYGVFT-EYLVK 229 (318)
T ss_pred ccCEEEEEEEeCC----------CCCcHHHccchhhcccc--------------------------cccccccc-cccCC
Confidence 9999998853321 1255 454442211000 00001000 00000
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCc-ccc-eEEEeccCCceeEEe
Q 020565 238 AVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEP-LKN-FFFFDIMDGKGVVED 315 (324)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~p-l~~-~~~~D~~~~~~~~~~ 315 (324)
....|.. .+.++|+++++|+++|.|++ +++|.+.| +.+ .+.||..+.+.....
T Consensus 230 -----~~~~~~~-------------------~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t~~~~~~~ 284 (318)
T TIGR03603 230 -----AENNVST-------------------AELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPTLEIQFQD 284 (318)
T ss_pred -----CCCCCcc-------------------CCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCCCeEEEEe
Confidence 0001222 23399999999999999999 99998886 444 899999999999998
Q ss_pred cCC
Q 020565 316 VSS 318 (324)
Q Consensus 316 ~~~ 318 (324)
+.+
T Consensus 285 l~k 287 (318)
T TIGR03603 285 ILK 287 (318)
T ss_pred cCC
Confidence 864
No 32
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=100.00 E-value=2.2e-34 Score=250.55 Aligned_cols=122 Identities=30% Similarity=0.488 Sum_probs=113.0
Q ss_pred CHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCC
Q 020565 7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG 86 (324)
Q Consensus 7 ~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G 86 (324)
+++|.+||||||++||.++|++|++++|+|+|+||+|++++|||+++|||+|+|+|+|.|+.+||+|||++++ ++ |
T Consensus 2 s~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---G 77 (287)
T PTZ00245 2 RDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---G 77 (287)
T ss_pred CHHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---C
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999997 67 9
Q ss_pred ccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHH
Q 020565 87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTK 137 (324)
Q Consensus 87 ~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~ 137 (324)
++|+++++++|+++||+|+|+.+...++. -.+|++||.+..+.+..
T Consensus 78 k~KAeaAa~~L~eLNP~V~V~~i~~rld~-----~n~fqvvV~~~~~le~a 123 (287)
T PTZ00245 78 GTRGARALGALQRLNPHVSVYDAVTKLDG-----SSGTRVTMAAVITEEDA 123 (287)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcccccCC-----cCCceEEEEEcccHHHH
Confidence 99999999999999999999998877654 33889999988876654
No 33
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.1e-34 Score=300.81 Aligned_cols=156 Identities=24% Similarity=0.448 Sum_probs=148.2
Q ss_pred HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCC-----CcEEEEcCCccccccCCCCcccCCCCcccC
Q 020565 11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~l~~~~di~~~ 85 (324)
.+|||||+++||.++|++|++++|+|+||||+|||++|||+++|| |+|+|+|.|.|+.+||+|||||+.+||
T Consensus 399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI--- 475 (1008)
T TIGR01408 399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI--- 475 (1008)
T ss_pred hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---
Confidence 479999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred CccHHHHHHHHHHhhCCCCeEeEeeCCCCC-----CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 86 G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
|++|+++++++++++||+++++++...+.. ...++++++|+||+|.|+.++|.++|+.|++ +++|+|.+++.|
T Consensus 476 Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~--~~iPli~~gt~G 553 (1008)
T TIGR01408 476 GKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLA--FLKPLLESGTLG 553 (1008)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeccC
Confidence 999999999999999999999999887753 2357889999999999999999999999999 999999999999
Q ss_pred ceEEEEEecCc
Q 020565 161 SCGEIFVDLQN 171 (324)
Q Consensus 161 ~~g~v~~d~~~ 171 (324)
+.|++.+..+.
T Consensus 554 ~~G~v~v~ip~ 564 (1008)
T TIGR01408 554 TKGNTQVVVPH 564 (1008)
T ss_pred ceeeEEEEeCC
Confidence 99999987764
No 34
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=1.3e-34 Score=260.28 Aligned_cols=151 Identities=22% Similarity=0.337 Sum_probs=139.5
Q ss_pred CCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565 5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY 84 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~ 84 (324)
.||+++.+||+||.++||.++|++|++++|+|+|+||+||+++++|+++||++|+|+|.|.++.+|++||+++..+++
T Consensus 4 ~~~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v-- 81 (268)
T PRK15116 4 VISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV-- 81 (268)
T ss_pred CCCHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc--
Confidence 388989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-Cchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
|++|+++++++++++||+++++.+...++. ...+++ .+||+||+|.|++..+..|+++|++ +++|+|.++..|
T Consensus 82 -G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~--~~ip~I~~gGag 156 (268)
T PRK15116 82 -GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRR--NKIPLVTTGGAG 156 (268)
T ss_pred -ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEECCcc
Confidence 999999999999999999999998776653 344555 4799999999999999999999999 999999875444
No 35
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=5.9e-33 Score=263.75 Aligned_cols=133 Identities=23% Similarity=0.422 Sum_probs=126.2
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC-----CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
+|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+||||++++|| |++|+++++++++++||+++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence 69999999999999999999999 999999999999999999999999999 9999999999999999999999
Q ss_pred EeeCCCCC-----CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565 108 VEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ 170 (324)
Q Consensus 108 ~~~~~~~~-----~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~ 170 (324)
.+...+.+ ...++++++|+||+|.|+.++|..+|+.|+. .++|+|.+++.|+.|++.+.++
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~--~~iPli~~gt~G~~G~v~v~iP 143 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVY--YRKPLLESGTLGTKGNTQVVIP 143 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEecccceeEEEEEeC
Confidence 99887753 2357889999999999999999999999999 9999999999999999988776
No 36
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-33 Score=277.83 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=185.2
Q ss_pred CCHHHH--HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCc
Q 020565 6 LTEQET--ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDEN 82 (324)
Q Consensus 6 l~~~e~--~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di 82 (324)
|++.+. +||+||+.+||.++|++|++++|+|+||| +||.++.+|+++|| |+|+|+|.|.|+.+||||| +++.+|+
T Consensus 80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di 157 (722)
T PRK07877 80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL 157 (722)
T ss_pred CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence 667776 89999999999999999999999999997 99999999999996 9999999999999999998 6899999
Q ss_pred ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
|++|+++++++|+++||+++|+++...+++ +.+++++++|+||+|+|+++++..+|+.|++ ++||+|+++..+
T Consensus 158 ---G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~--~~iP~i~~~~~~- 231 (722)
T PRK07877 158 ---GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARA--RRIPVLMATSDR- 231 (722)
T ss_pred ---ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCC-
Confidence 999999999999999999999999999986 5678899999999999999999999999999 999999988655
Q ss_pred eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565 162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (324)
Q Consensus 162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~ 240 (324)
|++.+. .|.+.. ..|| +|.|+.+.... +..++. ..+.|.....-
T Consensus 232 -g~~~~e--~~~~~p-----~~pc~~cl~~~~~~~~---~~~~~~------------------~~~~p~~~~~~------ 276 (722)
T PRK07877 232 -GLLDVE--RFDLEP-----DRPILHGLLGDIDAAK---LAGLST------------------KDKVPHVLRIL------ 276 (722)
T ss_pred -CCcCcc--eeeeCC-----CCceeeccCCCCChhh---hccCCh------------------hccCcceeeec------
Confidence 766310 111111 2366 66666542211 000000 00111000000
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHH----h--cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccC
Q 020565 241 KLKKELCEANALNASHVTDSLLERLI----I--GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMD 308 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~--~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~ 308 (324)
....++..+...+. . ..|++++-+++-||+++..+.|++.|+..| .+-++.|..+
T Consensus 277 ------------~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i~l~~~~~-sgr~~~~~~~ 337 (722)
T PRK07877 277 ------------DAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRIGLGEPLE-SGRVRVDLDE 337 (722)
T ss_pred ------------cccccCHHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHHHcCCcCC-CCCEEecHHH
Confidence 00111111111110 1 578899999999999999999999877655 3555556543
No 37
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.98 E-value=6.4e-32 Score=221.12 Aligned_cols=132 Identities=27% Similarity=0.483 Sum_probs=122.5
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
|++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+ |++|+++++++|+++||+++++.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence 57899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 110 KGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 110 ~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
+..+++ ...++++++|+||+|.|+.+.+.+++++|++ +++|+|++++.|++|++.
T Consensus 78 ~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~--~~~p~i~~~~~g~~G~~~ 133 (135)
T PF00899_consen 78 PEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICRE--YGIPFIDAGVNGFYGQVV 133 (135)
T ss_dssp ESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHH--TT-EEEEEEEETTEEEEE
T ss_pred ecccccccccccccCCCEEEEecCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEE
Confidence 998853 5677789999999999999999999999999 999999999999999985
No 38
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=249.21 Aligned_cols=142 Identities=21% Similarity=0.429 Sum_probs=134.6
Q ss_pred HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM 103 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~ 103 (324)
+-++.++++|||||||||+|||++|+|+++|+++|+|||-|+|+.+||||||||+.++| |++||.++++..++.||.
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn 81 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPN 81 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCC
Confidence 45678899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CeEeEeeCCCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565 104 VRVSVEKGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ 170 (324)
Q Consensus 104 v~v~~~~~~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~ 170 (324)
+++..+...+.+ .+.+|+++||+|+.|.||.+.|..+|+.|.. ..+|+|..|+.|+.||+.+...
T Consensus 82 ~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~--a~vPLIesGt~Gf~GQv~~ii~ 148 (603)
T KOG2013|consen 82 IKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLA--ASVPLIESGTGGFLGQVQVIIK 148 (603)
T ss_pred CceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHh--hcCCceecCcccccceEEEEec
Confidence 999999888875 5678999999999999999999999999999 9999999999999999987653
No 39
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=8e-31 Score=231.94 Aligned_cols=136 Identities=24% Similarity=0.345 Sum_probs=126.5
Q ss_pred hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565 21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF 100 (324)
Q Consensus 21 ~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l 100 (324)
+|.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||+++..+|+ |++|+++++++|+++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~i 77 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDI 77 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCeEeEeeCCCCC-Cchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 101 NPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 101 np~v~v~~~~~~~~~-~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
||+++++.+...+++ +..+++ .++|+||+|.|+...+..++++|++ +++|+|.+...|-
T Consensus 78 nP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~--~~ip~I~s~g~g~ 138 (231)
T cd00755 78 NPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRK--RKIPVISSMGAGG 138 (231)
T ss_pred CCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeCCcC
Confidence 999999999888774 344455 4799999999999999999999999 9999999876664
No 40
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=2.4e-30 Score=213.84 Aligned_cols=132 Identities=26% Similarity=0.393 Sum_probs=124.7
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|+|+||||+|++++++|+++|+++|+++|+|.++++|++||++++.+|+ |++|+++++++++++||+++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999887
Q ss_pred CCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEec
Q 020565 113 LSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169 (324)
Q Consensus 113 ~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~ 169 (324)
+.+ ...++++++|+||+|.|+.+.+..++++|++ +++|||.+++.|+.|+++++.
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~--~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKE--LGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCCcEEEEEEEE
Confidence 765 3367789999999999999999999999999 999999999999999999654
No 41
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.97 E-value=5.1e-31 Score=227.46 Aligned_cols=150 Identities=20% Similarity=0.307 Sum_probs=138.1
Q ss_pred CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccC
Q 020565 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~ 85 (324)
.++.-.+||.|.-+|+|.++.++|++++|+|+|+||+||.++..|+|+|||+|+|+|.|.|..+|+|||.-...+++
T Consensus 5 ~~~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i--- 81 (263)
T COG1179 5 ISDAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI--- 81 (263)
T ss_pred hHHHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---
Confidence 34555789999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CccHHHHHHHHHHhhCCCCeEeEeeCCCCC-Cchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 86 G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
|++|+++++++++.+||+++|......+++ +.++++ .+||+||+|.|+......|-.+|++ +++|+|.....|
T Consensus 82 Gk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~--~ki~vIss~Gag 156 (263)
T COG1179 82 GKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRR--NKIPVISSMGAG 156 (263)
T ss_pred ccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHH--cCCCEEeecccc
Confidence 999999999999999999999999988886 344544 6799999999999999999999999 999999776554
No 42
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.97 E-value=2.1e-30 Score=253.22 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=130.3
Q ss_pred HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM 103 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~ 103 (324)
-+.++|++++|+|+||||+||.+|++|+++|||+|++||+|.|+.+|++||++|+.+|+...|++||++++++|+++||.
T Consensus 331 l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~ 410 (664)
T TIGR01381 331 LQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPS 410 (664)
T ss_pred hhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCC
Confidence 45599999999999999999999999999999999999999999999999999999987445899999999999999999
Q ss_pred CeEeEeeCCC-------CC-----------CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565 104 VRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (324)
Q Consensus 104 v~v~~~~~~~-------~~-----------~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v 165 (324)
++++.+...+ ++ ...++++++|+|++|+|+.++|..++.+|.. +++|+|+++ .|+.|++
T Consensus 411 v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~--~~kplI~aA-lGfdg~l 487 (664)
T TIGR01381 411 IQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSR--HKKIAISAA-LGFDSYV 487 (664)
T ss_pred cEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEE-eccceEE
Confidence 9999887653 22 2356789999999999999999999999999 999999985 8999999
Q ss_pred EEecC
Q 020565 166 FVDLQ 170 (324)
Q Consensus 166 ~~d~~ 170 (324)
.+-.|
T Consensus 488 vmrhG 492 (664)
T TIGR01381 488 VMRHG 492 (664)
T ss_pred EEEec
Confidence 87444
No 43
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.96 E-value=4.3e-29 Score=216.96 Aligned_cols=140 Identities=16% Similarity=0.286 Sum_probs=121.1
Q ss_pred hhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh
Q 020565 20 VWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD 99 (324)
Q Consensus 20 l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ 99 (324)
-.|.++|++|++++|+|+|+||+|++++++|+++||++++|+|.|.|+.+||+||++ ..+++ |++|+++++++|++
T Consensus 10 ~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~i---G~~Ka~~~~~~l~~ 85 (200)
T TIGR02354 10 RHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQV---GEPKTEALKENISE 85 (200)
T ss_pred hcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhC---CCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999974 66889 99999999999999
Q ss_pred hCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHH-HHhccCCccEEEeeecCceEEEE
Q 020565 100 FNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEK-CRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 100 lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~-~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
+||+++++.+...+++ +..++++++|+||+|.|+++++..+++. |+. .+.+++.+ ..|+.|+.+
T Consensus 86 inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~--~~~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 86 INPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEK--YKDKYLIA-ASGLAGYDD 151 (200)
T ss_pred HCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHH--cCCCcEEE-EeccccCCC
Confidence 9999999998888875 4467789999999999999999876554 555 44444333 367777664
No 44
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=3.6e-29 Score=213.09 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=117.9
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|+|+|+||+|++++++|+++|+++++|+|.|.++.+|++||+++ .+|+ |++|+++++++|+++||+++++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQI---GEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 699999999999999999999999999999999999999999955 6789 999999999999999999999999888
Q ss_pred CCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccC-CccEEEeeecCceEEEEE
Q 020565 113 LSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 113 ~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~-~ip~i~~~~~G~~g~v~~ 167 (324)
++. ...++++++|+||+|.|+++.+..+++.|.+ + ++|||.+...|.+|++..
T Consensus 77 ~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~--~~~ip~i~~~~~~~~~~~~~ 131 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLG--NKNKPVVCASGMAGFGDSNN 131 (174)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--HCCCCEEEEehhhccCCeEE
Confidence 775 4467899999999999999999988777766 5 999999998888888763
No 45
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.95 E-value=9.3e-28 Score=216.72 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=120.3
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC--cccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE--NVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d--i~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||+||..+| + |++|+++++++|+++||+++++.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~ 77 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence 6999999999999999999999999999999999999999999999999 8 9999999999999999999999886
Q ss_pred CCC-----------------C-CCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565 111 GDL-----------------S-SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ 170 (324)
Q Consensus 111 ~~~-----------------~-~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~ 170 (324)
..+ + +...++++++|+||+|+|+.+.|..++.+|.. +++|+|+ ...|+.|++.+=.|
T Consensus 78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~--~~k~~I~-aalGfdg~lvmrhg 152 (307)
T cd01486 78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVIN-AALGFDSYLVMRHG 152 (307)
T ss_pred eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCcEEE-EEeccceEEEEEeC
Confidence 543 1 12457789999999999999999999999999 9999998 57899999886433
No 46
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.8e-28 Score=235.02 Aligned_cols=192 Identities=24% Similarity=0.448 Sum_probs=163.3
Q ss_pred CCCHHH----HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCC-----cEEEEcCCccccccCCCCc
Q 020565 5 ELTEQE----TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVG-----SLTLMDDRVVTEEAWSANF 75 (324)
Q Consensus 5 ~l~~~e----~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~-----~i~lvD~d~v~~~nl~r~~ 75 (324)
++++++ ..|||-||.++|..-|+||.+.++++||+|++|||++||++++|+| +|++.|.|.|+.+||||||
T Consensus 400 ~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQF 479 (1013)
T KOG2012|consen 400 PPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQF 479 (1013)
T ss_pred CCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhcccccee
Confidence 455555 3599999999999999999999999999999999999999999994 7999999999999999999
Q ss_pred ccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-----CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCC
Q 020565 76 LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR 150 (324)
Q Consensus 76 l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ 150 (324)
||+..|| |++|+++++.....+||+++|+.+..++.. ..++||.+.|+|..+.||.+.|..+++-|.- +.
T Consensus 480 LFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~--~~ 554 (1013)
T KOG2012|consen 480 LFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVY--YR 554 (1013)
T ss_pred ecccccc---CchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhh--hc
Confidence 9999999 999999999999999999999998887653 4689999999999999999999999999999 99
Q ss_pred ccEEEeeecCceEEEEEecCce--ee--eecCcccc-ccccc-CCCChHHhhccCccc
Q 020565 151 VAFYTVDCRDSCGEIFVDLQNH--KY--SKQKIEET-IECQL-RYPSFEEAISVPWRA 202 (324)
Q Consensus 151 ip~i~~~~~G~~g~v~~d~~~~--~~--~~~~~~~~-~~~~~-~f~~~~e~l~~~~~~ 202 (324)
+|++.+++.|..|...+..+-+ .| ....++.. .-|++ +||+-.| +..+|.+
T Consensus 555 kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~Ie-HTiqWAR 611 (1013)
T KOG2012|consen 555 KPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIE-HTIQWAR 611 (1013)
T ss_pred cchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHH-HHHHHHH
Confidence 9999999999999887776622 12 11112222 23565 5676655 4556754
No 47
>PRK06153 hypothetical protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=209.08 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=117.1
Q ss_pred HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCc-ccCCCCcccCCc--cHHHHHHHHHHhh
Q 020565 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANF-LIPPDENVYGGK--TIAEVCCDSLKDF 100 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~-l~~~~di~~~G~--~ka~~~~~~l~~l 100 (324)
..|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+++||+||+ +++.+|+ |+ +|++++++++.++
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~i 245 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSNM 245 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHHh
Confidence 5699999999999999999999999999999999999999999999999998 5688999 99 9999999999999
Q ss_pred CCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565 101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (324)
Q Consensus 101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~ 158 (324)
||. +..+...+++.+...++++|+||+|.|+.+.|..++++|.+ ++||||+++.
T Consensus 246 n~~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~ 299 (393)
T PRK06153 246 RRG--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGM 299 (393)
T ss_pred CCe--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeee
Confidence 985 56666667654445688999999999999999999999999 9999999875
No 48
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-24 Score=190.23 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=132.2
Q ss_pred HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (324)
Q Consensus 12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~ 91 (324)
+...|++.++|.++|+||+++-|+||||||+||.++-.|+|+|+++|.+||+|.|+.+.||||-....+|+ |.+|+.
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~ 131 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVM 131 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHH
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCCeEeEeeCCCCCC-chhh-cCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 92 VCCDSLKDFNPMVRVSVEKGDLSSL-DGEF-YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 92 ~~~~~l~~lnp~v~v~~~~~~~~~~-~~~~-~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
+++++++++.|++.|++...-++.. .+++ ..+.|+|++|.||.++...+-++|.. +++++|.+...+.
T Consensus 132 clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~--~~l~Viss~Gaaa 201 (430)
T KOG2018|consen 132 CLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYN--HGLKVISSTGAAA 201 (430)
T ss_pred HHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHH--cCCceEeccCccc
Confidence 9999999999999999887777653 3343 35789999999999999999999999 9999997764443
No 49
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.91 E-value=9.1e-24 Score=187.48 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=116.3
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCC-----C-----cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGV-----G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK 98 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv-----~-----~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~ 98 (324)
-+.++|+|||+||+||+++++|+++|+ | +++++|+|.|+.+||+|| +|.++|+ |++|+++++++++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dV---G~~Ka~v~~~ri~ 84 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV---GQNKAIVLVNRLN 84 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHC---CcHHHHHHHHHHH
Confidence 378899999999999999999999973 4 899999999999999999 5677889 9999999999999
Q ss_pred hhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhcc-CCccEEEeeecCceEEEEE
Q 020565 99 DFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS-KRVAFYTVDCRDSCGEIFV 167 (324)
Q Consensus 99 ~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~-~~ip~i~~~~~G~~g~v~~ 167 (324)
+.+ .++++.+...+.. ..++.++|+||+|.|+.+.|..|++.|++.. .++||+.++..+..|++.+
T Consensus 85 ~~~-~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 85 QAM-GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVIL 151 (244)
T ss_pred hcc-CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEE
Confidence 988 7899988877765 3446789999999999999999999997621 2479999999999998763
No 50
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.87 E-value=9.1e-21 Score=184.10 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=167.0
Q ss_pred CCCCHHHHHHhHHHHHhh------hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCccc
Q 020565 4 EELTEQETALYDRQIRVW------GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI 77 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l~------g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~ 77 (324)
+.|++...+||..||.++ |...-++.++++|+|+|.|++|+.++.+|+.+|+++|+.+|.|.+ .+|++|
T Consensus 96 ~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR---- 170 (637)
T TIGR03693 96 HELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR---- 170 (637)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence 459999999999999996 345556779999999999999999999999999999999999999 999999
Q ss_pred CCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCC--HHHHHHHHHHHHhccCC---cc
Q 020565 78 PPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR---VA 152 (324)
Q Consensus 78 ~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~--~~~~~~l~~~~~~~~~~---ip 152 (324)
| |+. ++.+++ +||.++++.++....+...+.++++|+||...|+ .....++|+.|++ .+ +|
T Consensus 171 ----I---gEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvk--egk~~IP 236 (637)
T TIGR03693 171 ----I---HEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKE--EGKGFIP 236 (637)
T ss_pred ----H---HHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHH--cCCCeEE
Confidence 6 876 665555 9999999998764444567888999999999994 5567899999999 99 66
Q ss_pred EEEeeecCceEEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHH-HHHHHhCCCCCCC
Q 020565 153 FYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLE-QFEEAEGRSPGEI 231 (324)
Q Consensus 153 ~i~~~~~G~~g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~-~f~~~~~~~p~~~ 231 (324)
++.++..++.|-+|. + .+. -||.|++ ...+.. ++..
T Consensus 237 ai~~G~~~liGPlft--P----------------------------------gkT----GCWeCa~~RL~e~~--L~~~- 273 (637)
T TIGR03693 237 AICLKQVGLAGPVFQ--Q----------------------------------HGD----ECFEAAWHRLHESA--LHEE- 273 (637)
T ss_pred EEEcccceeecceEC--C----------------------------------CCC----cHHHHHHHHHHHHh--cCCC-
Confidence 677777777777762 0 011 1233433 111111 1100
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccch-hHHHHHHHHHHHHHHHhcCCCcc--cceEEEeccC
Q 020565 232 SIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPV-CAVVGGILGQEVIKAISCKGEPL--KNFFFFDIMD 308 (324)
Q Consensus 232 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~-~av~Ggi~aqEviK~itg~~~pl--~~~~~~D~~~ 308 (324)
. ....++|. +|+++++++.|++|.+||...+- .+++.+|..+
T Consensus 274 -------------------~----------------~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleT 318 (637)
T TIGR03693 274 -------------------N----------------SLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLAT 318 (637)
T ss_pred -------------------C----------------cccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccc
Confidence 0 11226565 89999999999999999865443 3599999999
Q ss_pred CceeEEecCC
Q 020565 309 GKGVVEDVSS 318 (324)
Q Consensus 309 ~~~~~~~~~~ 318 (324)
.++..+.+.+
T Consensus 319 LE~~WH~vvk 328 (637)
T TIGR03693 319 LEGGWHAFIK 328 (637)
T ss_pred cccccccCCC
Confidence 9998887754
No 51
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.87 E-value=1.8e-21 Score=170.64 Aligned_cols=233 Identities=18% Similarity=0.290 Sum_probs=175.4
Q ss_pred HHhHHHHHh--hhH-HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565 12 ALYDRQIRV--WGA-DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88 (324)
Q Consensus 12 ~ry~Rqi~l--~g~-~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ 88 (324)
+-|+|-+.| .|. ...++++...|.|+|.||+||-+|..|.|.|||++.|+|.|.|+..|++|-| |.++.. |.+
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~Qa---Gls 135 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQA---GLS 135 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccc---cch
Confidence 459998888 554 5578999999999999999999999999999999999999999999999965 566667 999
Q ss_pred HHHHHHHHHHhhCCCCeEeEeeCCCCC--Cchhhc-----------CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565 89 IAEVCCDSLKDFNPMVRVSVEKGDLSS--LDGEFY-----------DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT 155 (324)
Q Consensus 89 ka~~~~~~l~~lnp~v~v~~~~~~~~~--~~~~~~-----------~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~ 155 (324)
|++++...|..+||+|.+++++..++. +-+.|. +..|+|+.|.||++.|..+|..|-+ .+-.|..
T Consensus 136 Kv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE--~~q~WmE 213 (422)
T KOG2336|consen 136 KVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNE--LNQTWME 213 (422)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHH--hhhHHHH
Confidence 999999999999999999999887763 212221 4589999999999999999999998 7777776
Q ss_pred eeec--CceEEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCc
Q 020565 156 VDCR--DSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISI 233 (324)
Q Consensus 156 ~~~~--G~~g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~ 233 (324)
.++. ...|.+....+. ...|-.--|++-
T Consensus 214 SGVSEnAVSGHIQ~i~PG----------etACFACaPPlV---------------------------------------- 243 (422)
T KOG2336|consen 214 SGVSENAVSGHIQLIVPG----------ETACFACAPPLV---------------------------------------- 243 (422)
T ss_pred ccCccccccceeEEecCC----------ccceecccCcee----------------------------------------
Confidence 6553 455666532221 011100011110
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeE
Q 020565 234 ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV 313 (324)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~ 313 (324)
-.+.+|+..+++=--+.+.++.+-++++|++.|-.+|+|..-++- ..|+-|+++..-.+.
T Consensus 244 -------------------VAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LLNFGeV-S~YlGYNal~DFFP~ 303 (422)
T KOG2336|consen 244 -------------------VASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLLNFGEV-SPYLGYNALSDFFPT 303 (422)
T ss_pred -------------------eecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHhhcccc-chhhcchhHHhhCcc
Confidence 011122222211111667799999999999999999999876654 578899998888888
Q ss_pred EecCCCC
Q 020565 314 EDVSSPK 320 (324)
Q Consensus 314 ~~~~~~~ 320 (324)
.++.|++
T Consensus 304 msmkPNP 310 (422)
T KOG2336|consen 304 MSMKPNP 310 (422)
T ss_pred ccCCCCC
Confidence 8887743
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.69 E-value=4.5e-17 Score=153.36 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=122.1
Q ss_pred HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM 103 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~ 103 (324)
--.+++++.++|+.|+|.+||.||++|...||++||++|+.+|..+|--||.||+.+|....|++||++++++|++++|.
T Consensus 333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~ 412 (669)
T KOG2337|consen 333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS 412 (669)
T ss_pred cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence 34589999999999999999999999999999999999999999999999999999997445799999999999999999
Q ss_pred CeEeEeeCCC-------CC-----------CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565 104 VRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (324)
Q Consensus 104 v~v~~~~~~~-------~~-----------~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v 165 (324)
++...+...+ .+ ..++++++.|+|+..+|+.+.|..-.-+|.. +++-+|++. .|+..|+
T Consensus 413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~--~~KivINaA-LGFDsyl 489 (669)
T KOG2337|consen 413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAA--KNKIVINAA-LGFDSYL 489 (669)
T ss_pred ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhh--hcceEeeee-cccceeE
Confidence 8776654432 11 1255678999999999999999877777766 777778776 8998888
Q ss_pred EEecC
Q 020565 166 FVDLQ 170 (324)
Q Consensus 166 ~~d~~ 170 (324)
..=.|
T Consensus 490 VMRHG 494 (669)
T KOG2337|consen 490 VMRHG 494 (669)
T ss_pred EEecC
Confidence 76444
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=76.84 Aligned_cols=124 Identities=12% Similarity=0.136 Sum_probs=96.8
Q ss_pred hcCcEEEEcCchhHHHHHHHHH---HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 30 SKSHILVCGMKGTVAEFCKNIV---LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~---~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
-...|.+||||-+|--++-+|. +-|..+|.++|...|++.|+-.- ..-..+ |.+|++-+ ++|.+-.+.-++
T Consensus 17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~---GEyKv~Fi-~rl~~~~f~r~V 90 (217)
T COG4015 17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKV---GEYKVDFI-KRLGRVHFGRRV 90 (217)
T ss_pred CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCc---chhHHHHH-HHhCcCCCCcee
Confidence 3456999999999999999998 67899999999999999998432 223456 99999865 456666777788
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC---CCHHHHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC---CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~---~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~ 164 (324)
+.+.+.++..+...+++ |+|+.|. |..++-..|.++|++ .++.-| ++.|.+|+
T Consensus 91 ~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~--rG~~Ti--sT~GVFGi 146 (217)
T COG4015 91 EAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKE--RGIKTI--STNGVFGI 146 (217)
T ss_pred ecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHH--cCceEe--ecCceeec
Confidence 89888888766666665 8877664 567778889999999 888655 55676664
No 54
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=98.41 E-value=4.3e-07 Score=67.80 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565 272 FTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS 318 (324)
Q Consensus 272 l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~ 318 (324)
++|+++++|+++|+|+||+|+|.+.++.+ +++||+.+++...+.+.+
T Consensus 26 lg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~k 73 (84)
T PF05237_consen 26 LGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIKK 73 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE---
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecCC
Confidence 99999999999999999999999999876 999999999999988874
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.08 E-value=1.2e-05 Score=65.62 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=58.7
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.+++++|+|+|+||.|..+++.|...|+++++++.. ...|++.+++.+ +...+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~~ 62 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNIE 62 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Cccccc
Confidence 589999999999999999999999999999999754 344777777776 333444
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~ 135 (324)
.... ++ ..+.+.++|+||.|+....
T Consensus 63 ~~~~--~~-~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 63 AIPL--ED-LEEALQEADIVINATPSGM 87 (135)
T ss_dssp EEEG--GG-HCHHHHTESEEEE-SSTTS
T ss_pred eeeH--HH-HHHHHhhCCeEEEecCCCC
Confidence 4322 11 2355779999999987543
No 56
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.04 E-value=5.3e-05 Score=66.07 Aligned_cols=95 Identities=8% Similarity=0.156 Sum_probs=66.0
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.|++.+|+|||.|.+|...++.|...| .++++++++.-. .+.++.+.-.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~~----------------------------~l~~l~~~~~i~ 57 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELTE----------------------------NLVKLVEEGKIR 57 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCH----------------------------HHHHHHhCCCEE
Confidence 378899999999999999999999999 579999752100 011111111233
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
..... .....+.++|+||.|+++.+....+.+.|++ ++++-.+.
T Consensus 58 ~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~---~~lvn~~d 101 (202)
T PRK06718 58 WKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPE---NALFNVIT 101 (202)
T ss_pred EEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHh---CCcEEECC
Confidence 33322 2245578999999999999999999999944 56544433
No 57
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.04 E-value=2e-05 Score=72.41 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=60.5
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
++.++|+|+|+||.|..++..|+..|+++++|+|. ...|++.+++.+.+.++.+.+..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR----------------------~~~ka~~la~~l~~~~~~~~~~~ 182 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV----------------------DPARAAALADELNARFPAARATA 182 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHHHhhCCCeEEEe
Confidence 56678999999999999999999999999999976 34588889998888777654433
Q ss_pred eeCCCCCCchhhcCCccEEEEcCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
.. ...+.+.++|+||.|+-
T Consensus 183 ~~-----~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 183 GS-----DLAAALAAADGLVHATP 201 (284)
T ss_pred cc-----chHhhhCCCCEEEECCc
Confidence 21 11334678999999973
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.03 E-value=2.6e-05 Score=74.01 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=70.8
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|+|+|+|++|+.+|.+|+..|.++|++.|.. ..|+.. +...... ++++..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs----------------------~~~~~~----i~~~~~~-~v~~~~v 54 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS----------------------KEKCAR----IAELIGG-KVEALQV 54 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHH----HHhhccc-cceeEEe
Confidence 579999999999999999999999999998872 112222 2111111 4444444
Q ss_pred CCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565 112 DLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (324)
Q Consensus 112 ~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~ 162 (324)
+..+ -..+.++++|+||.|...+-.. .+-+.|-+ .+++++++....-.
T Consensus 55 D~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~--~gv~yvDts~~~~~ 104 (389)
T COG1748 55 DAADVDALVALIKDFDLVINAAPPFVDL-TILKACIK--TGVDYVDTSYYEEP 104 (389)
T ss_pred cccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHH--hCCCEEEcccCCch
Confidence 4433 3467788999999998776555 67788888 88888877765443
No 59
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.89 E-value=0.00014 Score=63.49 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=74.7
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
|++.+|+|||.|.+|..-++.|...|. ++++++++.- +. ++++-..-+++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------~~---------------l~~l~~~~~i~~ 57 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------SE---------------LTLLAEQGGITW 57 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------HH---------------HHHHHHcCCEEE
Confidence 678899999999999999999999996 5999987321 00 111111114455
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v 165 (324)
....+. ...+.++++||.++++.+....+...|++ .++|+-.++.-....++
T Consensus 58 ~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~--~~ilvn~~d~~e~~~f~ 109 (205)
T TIGR01470 58 LARCFD---ADILEGAFLVIAATDDEELNRRVAHAARA--RGVPVNVVDDPELCSFI 109 (205)
T ss_pred EeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHH--cCCEEEECCCcccCeEE
Confidence 444433 45678999999999999899999999999 89988666554443433
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.81 E-value=5.5e-05 Score=58.61 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=63.8
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.|++.+|+|||.|.+|..-++.|..+| .+++++.++. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~-------------------------------~~i~-- 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE-------------------------------GLIQ-- 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH-------------------------------TSCE--
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh-------------------------------hHHH--
Confidence 478999999999999999999999999 5799998864 1000 1122
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
.....+ .+.++++++|+.++++......+.+.|++ .++|+-.+.
T Consensus 49 ~~~~~~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~--~~i~vn~~D 92 (103)
T PF13241_consen 49 LIRREF----EEDLDGADLVFAATDDPELNEAIYADARA--RGILVNVVD 92 (103)
T ss_dssp EEESS-----GGGCTTESEEEE-SS-HHHHHHHHHHHHH--TTSEEEETT
T ss_pred HHhhhH----HHHHhhheEEEecCCCHHHHHHHHHHHhh--CCEEEEECC
Confidence 222222 24578899999999999999999999999 888765444
No 61
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.72 E-value=0.00043 Score=57.90 Aligned_cols=84 Identities=8% Similarity=0.201 Sum_probs=62.0
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.|++.+|+|||.|.+|...++.|...|.. +++++++..+. +.++ + .+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIsp~~~~~----------------------------l~~l-~--~i~ 57 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVSPEICKE----------------------------MKEL-P--YIT 57 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCccCHH----------------------------HHhc-c--CcE
Confidence 47889999999999999999999999975 99987642211 1111 1 122
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
..... +.+..++++|+||.++++.+....+...|++
T Consensus 58 ~~~~~---~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~ 93 (157)
T PRK06719 58 WKQKT---FSNDDIKDAHLIYAATNQHAVNMMVKQAAHD 93 (157)
T ss_pred EEecc---cChhcCCCceEEEECCCCHHHHHHHHHHHHH
Confidence 22222 2345578999999999999999999999977
No 62
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.58 E-value=0.001 Score=58.72 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=72.4
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.+++.+|+|||.|.++..=++.|..+|.. +|++-++.-.. ++++-..-.++
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~~e----------------------------l~~l~~~~~i~ 72 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFSKE----------------------------FLDLKKYGNLK 72 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCCHH----------------------------HHHHHhCCCEE
Confidence 35688999999999999999999999954 99987642111 11111111344
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.....+ ..+.+.++++||.|+++.+....+.+.|+. .++++..+..-..
T Consensus 73 ~~~r~~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~--~~~lvn~vd~p~~ 121 (223)
T PRK05562 73 LIKGNY---DKEFIKDKHLIVIATDDEKLNNKIRKHCDR--LYKLYIDCSDYKK 121 (223)
T ss_pred EEeCCC---ChHHhCCCcEEEECCCCHHHHHHHHHHHHH--cCCeEEEcCCccc
Confidence 444433 355678999999999999999999999999 8887776654443
No 63
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.53 E-value=0.00033 Score=64.51 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=57.5
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
++.++++|+|+||+|..++..|+..|+.++++++.+. + ...|++.+++.+.+..+.+.+..
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~--------------~-----~~~~a~~l~~~l~~~~~~~~~~~ 184 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD--------------D-----FYERAEQTAEKIKQEVPECIVNV 184 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------h-----HHHHHHHHHHHHhhcCCCceeEE
Confidence 4567899999999999999999999999999986510 0 12467777777766555544433
Q ss_pred eeCCCCC--CchhhcCCccEEEEcCC
Q 020565 109 EKGDLSS--LDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 109 ~~~~~~~--~~~~~~~~~diVi~~~~ 132 (324)
. ++.+ .....++.+|+||+|+-
T Consensus 185 ~--d~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 185 Y--DLNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred e--chhhhhHHHhhhccCCEEEEeCC
Confidence 2 2221 12334567899998873
No 64
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.38 E-value=0.00043 Score=66.31 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=65.2
Q ss_pred EEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 34 ILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 34 VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
|+|+|+|.+|+.+++.|++.+-. ++++.|. ...|++.+++.+ ...+++...-+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------------------~~~~~~~~~~~~----~~~~~~~~~~d 54 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------------------NPEKAERLAEKL----LGDRVEAVQVD 54 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------------------SHHHHHHHHT------TTTTEEEEE--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------------------CHHHHHHHHhhc----cccceeEEEEe
Confidence 78999999999999999999855 8999877 444555444444 22355555555
Q ss_pred CCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 113 LSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 113 ~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
..+ ...++++++|+||+|..+. ....+-+.|.+ .++++++..
T Consensus 55 ~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~--~g~~yvD~~ 98 (386)
T PF03435_consen 55 VNDPESLAELLRGCDVVINCAGPF-FGEPVARACIE--AGVHYVDTS 98 (386)
T ss_dssp TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHH--HT-EEEESS
T ss_pred cCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHH--hCCCeeccc
Confidence 544 2467889999999999877 66678889988 888888843
No 65
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.36 E-value=0.00058 Score=62.65 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=55.3
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
++.++|+|+|+||.+..++..|+..|+.+|+|++. ...|++.+++.+.+..+...+..
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------------------~~~ka~~La~~~~~~~~~~~~~~ 182 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------------------DTSRAQALADVINNAVGREAVVG 182 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccCcceEEe
Confidence 45678999999999999999999999999999865 33477777777665444322222
Q ss_pred eeCCCCCCchhhcCCccEEEEcCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
. .... ....+..+|+||+|+-
T Consensus 183 ~--~~~~-~~~~~~~~divINaTp 203 (283)
T PRK14027 183 V--DARG-IEDVIAAADGVVNATP 203 (283)
T ss_pred c--CHhH-HHHHHhhcCEEEEcCC
Confidence 1 1111 1223467899999874
No 66
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.32 E-value=0.00061 Score=62.54 Aligned_cols=77 Identities=17% Similarity=0.073 Sum_probs=53.5
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
++.++|+|+|+||.|..++..|+..|+.+++|++. -..|++.+++.+..... +..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------------------t~~ka~~La~~~~~~~~---~~~ 177 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------------------NPDKLSRLVDLGVQVGV---ITR 177 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------------------CHHHHHHHHHHhhhcCc---cee
Confidence 46789999999999999999999999999999864 23367777766643311 111
Q ss_pred eeCCCCCCchhhcCCccEEEEcCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
.. ..+.....+.++|+||.|+-
T Consensus 178 ~~--~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 178 LE--GDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred cc--chhhhhhcccCCCEEEECCC
Confidence 11 00111234568999999975
No 67
>PRK04148 hypothetical protein; Provisional
Probab=97.29 E-value=0.0037 Score=50.60 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=72.6
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
++.+|++||+| .|..+|..|+..|. .++.+|- ....++.+++ . .+++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi----------------------~~~aV~~a~~----~----~~~~v 63 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDI----------------------NEKAVEKAKK----L----GLNAF 63 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHH----h----CCeEE
Confidence 44689999999 89999999999997 4888876 2222222222 1 23455
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
..++.+-..+..+++|+|-...-+++....+-+++++ .+.+++-....|
T Consensus 64 ~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 64 VDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred ECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 5566665677889999999999999999999999999 888887655444
No 68
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.27 E-value=0.00049 Score=65.80 Aligned_cols=76 Identities=21% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.|++++|+|||+|-+|.-++++|...|+..|+++- | -..||+.+++++. ..+.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------R------------T~erA~~La~~~~-----~~~~ 227 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------R------------TLERAEELAKKLG-----AEAV 227 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------C------------CHHHHHHHHHHhC-----Ceee
Confidence 48889999999999999999999999999999963 3 3447777777776 2222
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~ 135 (324)
.. +...+.+.++|+||.++..+.
T Consensus 228 ~l-----~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 228 AL-----EELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cH-----HHHHHhhhhCCEEEEecCCCc
Confidence 21 223567889999999998654
No 69
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.26 E-value=0.00016 Score=62.56 Aligned_cols=55 Identities=22% Similarity=0.148 Sum_probs=48.4
Q ss_pred hHHHHHHHhcCcEEEEcCchhHHH-HHHHHHHhCCCcE------EEE---cCCccccccCCCCcc
Q 020565 22 GADAQRRLSKSHILVCGMKGTVAE-FCKNIVLAGVGSL------TLM---DDRVVTEEAWSANFL 76 (324)
Q Consensus 22 g~~~q~~l~~~~VliiG~g~lGse-i~k~L~~~Gv~~i------~lv---D~d~v~~~nl~r~~l 76 (324)
...+++++++++|.|+|.|+.|++ ++.+|+.+||+.+ ++| |.+..+.+++|++++
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 457899999999999999999998 9999999999988 888 888888888877654
No 70
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.26 E-value=0.0011 Score=61.01 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=55.8
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
++.++|+|+|+||.+..++..|+..|+++++|++.+. + ...|++.+++.+....+ ..+..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~-----~~~ka~~la~~~~~~~~-~~~~~ 181 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E-----FFDKALAFAQRVNENTD-CVVTV 181 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c-----HHHHHHHHHHHhhhccC-ceEEE
Confidence 4667999999999999999999999999999987510 0 24588888887754332 22222
Q ss_pred eeCCCCCCchhhcCCccEEEEcCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
....-.....+.+.++|+||+|+-
T Consensus 182 ~~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 182 TDLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred echhhhhhhhhhcccCCEEEECCC
Confidence 211100011224567899999873
No 71
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.18 E-value=0.0013 Score=60.19 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=53.9
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
+++++|+|+|+||+|..+++.|...|+.++++++. ...|++.+++.+....+ +.+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R----------------------~~~~a~~l~~~~~~~~~-~~~-- 175 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNR----------------------TVERAEELAKLFGALGK-AEL-- 175 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc-eee--
Confidence 56789999999999999999999999999999865 23366666666653321 121
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
.. ...+.+.++|+||+|+-.
T Consensus 176 -~~----~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 176 -DL----ELQEELADFDLIINATSA 195 (278)
T ss_pred -cc----cchhccccCCEEEECCcC
Confidence 11 113456789999999853
No 72
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.11 E-value=0.0018 Score=53.12 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=55.7
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCc-EEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeE
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGS-LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV 108 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~-i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~ 108 (324)
||.|||+ |.+|+.++..|+..|+.+ +.|+|. ...|++..+.-|....+.. .+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i 59 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI----------------------NEDKAEGEALDLSHASAPLPSPVRI 59 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES----------------------SHHHHHHHHHHHHHHHHGSTEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEecc----------------------Ccccceeeehhhhhhhhhccccccc
Confidence 7999999 999999999999999965 999987 4446777777777664444 2333
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
.. ...+.++++|+||.+...
T Consensus 60 ~~-----~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 60 TS-----GDYEALKDADIVVITAGV 79 (141)
T ss_dssp EE-----SSGGGGTTESEEEETTST
T ss_pred cc-----ccccccccccEEEEeccc
Confidence 22 235568899999998764
No 73
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.07 E-value=0.00087 Score=56.30 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=65.5
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|.+||+|..|+.+++||..+|.. ++++|.+.-....+... |-..++...+.+++. ++-+.....
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-----------g~~~~~s~~e~~~~~--dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-----------GAEVADSPAEAAEQA--DVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-----------TEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-----------hhhhhhhhhhHhhcc--cceEeeccc
Confidence 4799999999999999999999986 88888643222222211 111111222222322 232322221
Q ss_pred C--CCCC-----chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 D--LSSL-----DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~--~~~~-----~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
. ..+. ....+..-.+||+++ .+++....+.+.+.+ +++.|+++...|.
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapV~Gg 123 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA--KGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH--TTEEEEEEEEESH
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh--ccceeeeeeeecc
Confidence 1 1110 122334556777776 478888899999999 9999999998874
No 74
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.06 E-value=0.0011 Score=63.95 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.+.+++|+|+|+|+.|..++++|...|+.+|+++.. -..|++.+++.+.. ..+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR----------------------t~~ra~~La~~~~~----~~~~ 231 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR----------------------TIEKAQKITSAFRN----ASAH 231 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHhcC----CeEe
Confidence 467889999999999999999999999999999644 12255555554421 1111
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~ 135 (324)
. + +...+.+.++|+||.|+..+.
T Consensus 232 ~----~-~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 232 Y----L-SELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred c----H-HHHHHHhccCCEEEECcCCCC
Confidence 1 1 122566789999999998654
No 75
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0023 Score=58.60 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=55.9
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
+..+|+|+|+||.+..++..|+..|+.+|+|+.. -..|++.+++.+.+..+.+.....
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~~~~~~~~ 182 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGAAVEAAAL 182 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhcccccccccc
Confidence 3588999999999999999999999999999755 556888888888888763222111
Q ss_pred eCCCCCCchhhcCCccEEEEcCC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
.+. +...++|+||+|+-
T Consensus 183 ----~~~--~~~~~~dliINaTp 199 (283)
T COG0169 183 ----ADL--EGLEEADLLINATP 199 (283)
T ss_pred ----ccc--ccccccCEEEECCC
Confidence 111 11116899999875
No 76
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.01 E-value=0.0037 Score=54.79 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=70.8
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.|++++|+|||.|.+|.-=++.|..+|.. ++++-++. .+ . + ..+.+.+ .+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~~-e-----------l------------~~~~~~~---~i~ 59 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-EP-E-----------L------------KALIEEG---KIK 59 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-cH-H-----------H------------HHHHHhc---Ccc
Confidence 36788999999999999999999999976 88876644 11 1 1 0111111 122
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.... ....+.+..+++||.++++.+....+.+.|++ +++|+-.+.--.+
T Consensus 60 ~~~~---~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~--~~i~vNv~D~p~~ 108 (210)
T COG1648 60 WIER---EFDAEDLDDAFLVIAATDDEELNERIAKAARE--RRILVNVVDDPEL 108 (210)
T ss_pred hhhc---ccChhhhcCceEEEEeCCCHHHHHHHHHHHHH--hCCceeccCCccc
Confidence 2222 23344556699999999999999999999999 8887766655444
No 77
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.94 E-value=0.0023 Score=52.85 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++..+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998667888876
No 78
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.93 E-value=0.0082 Score=58.94 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=71.2
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
.|++.+|+|||.|.++..=++.|..+|. +++++-++.- +.++++-..-+++
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~----------------------------~~~~~l~~~~~i~ 59 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI----------------------------PQFTAWADAGMLT 59 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC----------------------------HHHHHHHhCCCEE
Confidence 4789999999999999999999999997 4888755311 0112221122344
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~ 158 (324)
.....+ ..+.++++++||.|+++.+....|.+.|++ .++++-.+..
T Consensus 60 ~~~~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~--~~~lvN~~d~ 105 (457)
T PRK10637 60 LVEGPF---DESLLDTCWLAIAATDDDAVNQRVSEAAEA--RRIFCNVVDA 105 (457)
T ss_pred EEeCCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHHH--cCcEEEECCC
Confidence 444443 356678999999999999999999999999 8887655543
No 79
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.88 E-value=0.0036 Score=58.13 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=52.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeE
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV 108 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~ 108 (324)
.+|.|||+|++|+.++..|+..|+. ++.++|. ...|++..+..|....+.. .+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~----------------------~~~~~~~~a~dL~~~~~~~~~~~~i 58 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI----------------------NEEKAEGEALDLEDALAFLPSPVKI 58 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHhHhhHHHHhhccCCCeEE
Confidence 3799999999999999999999985 8999987 3335555566665543211 1112
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
... ..+.++++|+||.|+..
T Consensus 59 ~~~-----~~~~l~~aDIVIitag~ 78 (306)
T cd05291 59 KAG-----DYSDCKDADIVVITAGA 78 (306)
T ss_pred EcC-----CHHHhCCCCEEEEccCC
Confidence 111 12346899999999864
No 80
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0069 Score=53.73 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=61.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+++|+|+|-+|..+|+.|+..|-. ++++|.|.-. +.+.+.+. ....++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~-------------------------~~~~~~~~---~~~~~v~g 51 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEER-------------------------VEEFLADE---LDTHVVIG 51 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHH-------------------------HHHHhhhh---cceEEEEe
Confidence 3689999999999999999999987 7777662211 11111111 12222222
Q ss_pred CCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHH-HhccCCccEEEeeec
Q 020565 112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKC-RKLSKRVAFYTVDCR 159 (324)
Q Consensus 112 ~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~-~~~~~~ip~i~~~~~ 159 (324)
+-++ +.+.-+.++|++|.++++......+-..+ .. .++|-+.+.+.
T Consensus 52 d~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~--~gv~~viar~~ 101 (225)
T COG0569 52 DATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKE--FGVPRVIARAR 101 (225)
T ss_pred cCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHh--cCCCcEEEEec
Confidence 2221 22334689999999999877776666655 44 57887766654
No 81
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.81 E-value=0.0041 Score=57.89 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..++.++|.|+|+|.+|.++++.|...|+. +..+|...-.. . | +.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~~~-----------~-----~-----------------~~- 176 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRKSW-----------P-----G-----------------VQ- 176 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCCC-----------C-----C-----------------ce-
Confidence 357889999999999999999999999985 77777521000 0 0 00
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHH-HHhccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEK-CRKLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~-~~~~~~~ip~i~~~ 157 (324)
... .. ...+++++++|+|+.+. .+.+++..+++- ...++.+.-+|+++
T Consensus 177 -~~~-~~-~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 177 -SFA-GR-EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred -eec-cc-ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 000 01 12367788999998886 467788777753 33333455555554
No 82
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0075 Score=56.25 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=54.6
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC-eEeE
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSV 108 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v-~v~~ 108 (324)
..||.|||+|.+|+.++..|+..|+. +|.|+|- .+.|++..+--|....|.. ++..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~----------------------~~~~~~g~~~Dl~~~~~~~~~~~i 63 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI----------------------NKEKAEGDAMDLSHAVPFTSPTKI 63 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCchhHHHHHHHHhhccccCCeEE
Confidence 46899999999999999999999986 6999876 4445666666777766542 2222
Q ss_pred eeCCCCCCchhhcCCccEEEEcCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
... ..+.++++|+||.+..
T Consensus 64 ~~~-----~~~~~~~adivIitag 82 (315)
T PRK00066 64 YAG-----DYSDCKDADLVVITAG 82 (315)
T ss_pred EeC-----CHHHhCCCCEEEEecC
Confidence 221 2345789999998765
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.76 E-value=0.006 Score=56.80 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=54.2
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
+...+|+|+|+|.+|..++++|...|..+++++|. ...|++.+++.+.. .+..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r----------------------~~~ra~~la~~~g~-----~~~~ 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR----------------------TYERAEELAKELGG-----NAVP 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHcCC-----eEEe
Confidence 57899999999999999999999999999999876 33345444444321 1111
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHHH
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTT 136 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~ 136 (324)
. + ...+.+.++|+||.|+.+...
T Consensus 229 ~----~-~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 229 L----D-ELLELLNEADVVISATGAPHY 251 (311)
T ss_pred H----H-HHHHHHhcCCEEEECCCCCch
Confidence 1 1 123456789999999987665
No 84
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.71 E-value=0.0054 Score=51.15 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=60.6
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|.|+|+|..|+.+|..|+..| .+++|+..+.-..+.++.+-. -....|.+++.. .-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~--------------------n~~~~~~~~l~~-~i~ 58 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ--------------------NPKYLPGIKLPE-NIK 58 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS--------------------ETTTSTTSBEET-TEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC--------------------CCCCCCCcccCc-ccc
Confidence 6899999999999999999999 568888775411111111000 000112222211 011
Q ss_pred CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.+....+.+++.|+||.+.-+...+..+.++...+..+.++|.+ +-|+
T Consensus 59 ~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~-~KG~ 106 (157)
T PF01210_consen 59 ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA-TKGF 106 (157)
T ss_dssp EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence 12334567899999999999888777777776643356666643 3444
No 85
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.71 E-value=0.011 Score=54.93 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=29.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
..||+|+|+|++|+.++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4579999999999999999999996 59998874
No 86
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=96.63 E-value=0.0068 Score=43.03 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhc
Q 020565 236 LPAVLKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISC 293 (324)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg 293 (324)
.+-+...++-....+|++ . .+...+++++. .-|++.|..++++|++..|++|+++|
T Consensus 10 ~~fI~a~anLrA~~f~I~-~-~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 10 LDFIYAAANLRAQNFGIP-P-LDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp HHHHHHHHHHHHHHTT-----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCC-c-ccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 334445566677778887 3 88888999998 88999999999999999999999976
No 87
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.63 E-value=0.0071 Score=58.65 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=33.1
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999866
No 88
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.62 E-value=0.011 Score=54.85 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=52.7
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC---eEeE
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RVSV 108 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v---~v~~ 108 (324)
||.|||+|.+|+.+|..|+..|+ +++.|+|- .+.|++..+--|....+.. ++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~a~g~a~DL~~~~~~~~~~~~~i 58 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV----------------------NEGVAEGEALDFHHATALTYSTNTKI 58 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHHHHHHHhhhccCCCCCEEE
Confidence 68999999999999999999998 57999886 3345555556666654421 2333
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
...+ .+.++++|+||.+...
T Consensus 59 ~~~~-----y~~~~~aDivvitaG~ 78 (307)
T cd05290 59 RAGD-----YDDCADADIIVITAGP 78 (307)
T ss_pred EECC-----HHHhCCCCEEEECCCC
Confidence 3222 4668899999988763
No 89
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.61 E-value=0.0055 Score=46.30 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=53.8
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC--CcEEEE-cCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV--GSLTLM-DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv--~~i~lv-D~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
||.|||+|.+|..+++.|..+|+ .++.++ +. ...|++. +.+..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~----~~~~~~-~~~~~- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAE----LAKEYG-VQATA- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHH----HHHHCT-TEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHH----HHHhhc-ccccc-
Confidence 68999999999999999999994 234432 22 2223332 333333 12111
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV 156 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~ 156 (324)
....+.++..|+||.|..+......+.++ .....+..+|+.
T Consensus 53 -----~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 53 -----DDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp -----EEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEE
T ss_pred -----CChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEe
Confidence 12356677899999999887766666666 222245556654
No 90
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.59 E-value=0.024 Score=44.22 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=58.4
Q ss_pred EEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCC
Q 020565 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL 113 (324)
Q Consensus 34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~ 113 (324)
|+|+|+|.+|.++++.|...| -.++++|.|.- ++ +.+++.. +.+...+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~----------------------~~----~~~~~~~----~~~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE----------------------RV----EELREEG----VEVIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH----------------------HH----HHHHHTT----SEEEES-T
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH----------------------HH----HHHHhcc----cccccccc
Confidence 689999999999999999955 46999988321 21 1222222 22333444
Q ss_pred CC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565 114 SS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF 153 (324)
Q Consensus 114 ~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~ 153 (324)
.+ .....+++++.||.++++......+-..++++...++.
T Consensus 50 ~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~i 92 (116)
T PF02254_consen 50 TDPEVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRI 92 (116)
T ss_dssp TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEE
T ss_pred hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeE
Confidence 33 22345678999999999988888888888874444433
No 91
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.52 E-value=0.0093 Score=51.41 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=54.7
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
.+++++++|+|. |++|..+++.|+..|. ++++++. ...|++.+.+.+.+.. ...+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R----------------------~~~~~~~l~~~l~~~~-~~~~ 80 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGR----------------------DLERAQKAADSLRARF-GEGV 80 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC----------------------CHHHHHHHHHHHHhhc-CCcE
Confidence 467899999996 9999999999999984 7888754 2235666666665332 2233
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
......-.+...+.++++|+||.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 81 GAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred EEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 3221110112235678899999988643
No 92
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.49 E-value=0.0063 Score=56.35 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~ 111 (324)
+|.|||+|.+|+.++.+|+..|.. ++++|.+.-....+.. . |-..+....+.+... ++++-+...+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~~--------~---g~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEALAE--------E---GATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHH--------C---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence 699999999999999999999975 8888885432222211 1 222121222223332 35554444433
Q ss_pred C-C-CCCc---hhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 D-L-SSLD---GEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~-~-~~~~---~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
. . .+.. ...++.-++||+++ .++.....+.+.+++ .++.|+++.+.|.
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~~dapvsG~ 123 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE--KGIHFVDVGTSGG 123 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH--cCCEEEeCCCCcC
Confidence 2 1 1111 12344557888875 456667778888988 8999999887764
No 93
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.48 E-value=0.0069 Score=49.79 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=52.0
Q ss_pred EEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CCCeEeEeeCC
Q 020565 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMVRVSVEKGD 112 (324)
Q Consensus 34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~v~v~~~~~~ 112 (324)
|+|+|+|++|+.+|-.|..+|.. +++++... . .+.+.+.=-.+. +.-+.......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~----------------------~~~~~~~g~~~~~~~~~~~~~~~~ 56 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-R----------------------LEAIKEQGLTITGPDGDETVQPPI 56 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-H----------------------HHHHHHHCEEEEETTEEEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-c----------------------HHhhhheeEEEEecccceeccccc
Confidence 78999999999999999998886 88876633 2 222111111110 01000000000
Q ss_pred CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
.........+.+|+||+|+-+.+....+..+...
T Consensus 57 ~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 57 VISAPSADAGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp EESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred ccCcchhccCCCcEEEEEecccchHHHHHHHhhc
Confidence 0001123567899999999988888777776544
No 94
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.016 Score=57.16 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=68.6
Q ss_pred HHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC
Q 020565 24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP 102 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp 102 (324)
.-+..+.+++|+|-|. |++|+|+++.++..+.++|.++|. +++|-..+...+++..|
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~----------------------~E~~~~~i~~el~~~~~ 300 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR----------------------DEYKLYLIDMELREKFP 300 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC----------------------chHHHHHHHHHHHhhCC
Confidence 4467899999999997 569999999999999999999987 67777778888888888
Q ss_pred CCeEeEeeCCCCCC--chhhcCC--ccEEEEc
Q 020565 103 MVRVSVEKGDLSSL--DGEFYDK--FDVVVVS 130 (324)
Q Consensus 103 ~v~v~~~~~~~~~~--~~~~~~~--~diVi~~ 130 (324)
..++..+-.++.+. ....+++ .|+|+-+
T Consensus 301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred CcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 88888877776652 3455566 7888843
No 95
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.32 E-value=0.017 Score=53.91 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=60.5
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..++.++|.|+|+|++|.++|+.|...| ..|..-.... . +-+... +.+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~--------------------~--~~~~~~----~~~~~--- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQ--------------------L--PPEEAY----EYYAE--- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccC--------------------C--chhhHH----Hhccc---
Confidence 5789999999999999999999999977 4443321100 1 111111 11111
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHH-HHhccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEK-CRKLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~-~~~~~~~ip~i~~~ 157 (324)
....++++.++|+||.|. .+.+++..+|+. +.+++.+..+++++
T Consensus 208 -------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 208 -------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred -------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 112367788999886655 788899889875 44545666666655
No 96
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.024 Score=55.41 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=59.7
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
+++++|+|+|.|++|..+|+.|+..|.. ++++|.+.-+ ..+...+.|.+.+ ++ .
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~-V~~~d~~~~~---------------------~~~~~~~~l~~~~--~~--~ 56 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAK-VILTDEKEED---------------------QLKEALEELGELG--IE--L 56 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchH---------------------HHHHHHHHHHhcC--CE--E
Confidence 5789999999999999999999999975 9998773210 1111123333332 22 2
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT 155 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~ 155 (324)
..... .++...++|+||.+....... .+-..|++ +++|++.
T Consensus 57 ~~~~~---~~~~~~~~d~vv~~~g~~~~~-~~~~~a~~--~~i~~~~ 97 (450)
T PRK14106 57 VLGEY---PEEFLEGVDLVVVSPGVPLDS-PPVVQAHK--KGIEVIG 97 (450)
T ss_pred EeCCc---chhHhhcCCEEEECCCCCCCC-HHHHHHHH--CCCcEEe
Confidence 22221 124456899999988643332 24556677 6776653
No 97
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.23 E-value=0.017 Score=46.16 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=56.9
Q ss_pred cEEEEcC-chhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 33 HILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
||.|+|+ |-+|..+++.+.. .|+.=.-.+|... ++. -..|+ | + +-.+. ...+..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~g~d~---g----~-----~~~~~-~~~~~v-- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------VGKDV---G----E-----LAGIG-PLGVPV-- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------TTSBC---H----H-----HCTSS-T-SSBE--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------ccchh---h----h-----hhCcC-Cccccc--
Confidence 7999999 9999999999999 6655444455532 000 01223 2 1 11111 111111
Q ss_pred CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
....++.+..+|+||+.+ +++.....-++|.+ +++|++.+.
T Consensus 58 ---~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~--~g~~~ViGT 98 (124)
T PF01113_consen 58 ---TDDLEELLEEADVVIDFT-NPDAVYDNLEYALK--HGVPLVIGT 98 (124)
T ss_dssp ---BS-HHHHTTH-SEEEEES--HHHHHHHHHHHHH--HT-EEEEE-
T ss_pred ---chhHHHhcccCCEEEEcC-ChHHhHHHHHHHHh--CCCCEEEEC
Confidence 133466677799999999 77777778888988 899988544
No 98
>PLN00203 glutamyl-tRNA reductase
Probab=96.23 E-value=0.0079 Score=59.76 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=53.6
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
|...+|+|||+|.+|..++++|...|+.++++++. ...|++.+++.+ +.+.+..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR----------------------s~era~~La~~~----~g~~i~~ 317 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR----------------------SEERVAALREEF----PDVEIIY 317 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC----------------------CHHHHHHHHHHh----CCCceEe
Confidence 55799999999999999999999999988999765 223555544443 2232222
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~ 135 (324)
.. + +...+.+.++|+||.|+....
T Consensus 318 ~~--~-~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 318 KP--L-DEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred ec--H-hhHHHHHhcCCEEEEccCCCC
Confidence 11 1 122456789999999986433
No 99
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.22 E-value=0.021 Score=52.92 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=52.7
Q ss_pred EEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC-eEeEeeC
Q 020565 34 ILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSVEKG 111 (324)
Q Consensus 34 VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v-~v~~~~~ 111 (324)
|.|||+|.+|+.++-.|+..|+ .+++++|. .+.|++..+..|....+.. ......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~----------------------~~~~~~g~~~DL~~~~~~~~~~~i~~- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV----------------------NEEKAKGDALDLSHASAFLATGTIVR- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHhHHHhccccCCCeEEE-
Confidence 5799999999999999999998 46999987 4445666667777776542 111111
Q ss_pred CCCCCchhhcCCccEEEEcCCC
Q 020565 112 DLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 112 ~~~~~~~~~~~~~diVi~~~~~ 133 (324)
.. ..+.++++|+||.|...
T Consensus 58 --~~-~~~~l~~aDiVIitag~ 76 (300)
T cd00300 58 --GG-DYADAADADIVVITAGA 76 (300)
T ss_pred --CC-CHHHhCCCCEEEEcCCC
Confidence 11 13568899999998763
No 100
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.21 E-value=0.023 Score=53.03 Aligned_cols=111 Identities=10% Similarity=0.002 Sum_probs=61.6
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
++|.|||+|.+|+.+|.+++.+|.. ++++|.+.-..+. .+.+.+...+.+.+..+.. .....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~---------------~~~~i~~~~~~~~~~~~~~--~~~~~ 69 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAA---------------LRANVANAWPALERQGLAP--GASPA 69 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHH---------------HHHHHHHHHHHHHHcCCCh--hhHHh
Confidence 5799999999999999999999987 8999874321111 1222222223332222110 00000
Q ss_pred CC--CCCchhhcCCccEEEEcC-CCHHHHHHHH-HHHHhccCCccEEEeeecCc
Q 020565 112 DL--SSLDGEFYDKFDVVVVSC-CSVTTKKLIN-EKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~~--~~~~~~~~~~~diVi~~~-~~~~~~~~l~-~~~~~~~~~ip~i~~~~~G~ 161 (324)
.+ .....+.++++|+|+.+. .+.+.+..+- ++....+.+. +|...+.++
T Consensus 70 ~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l 122 (321)
T PRK07066 70 RLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL 122 (321)
T ss_pred hceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc
Confidence 11 112345678999999886 4666554333 2222212233 666666665
No 101
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.16 E-value=0.034 Score=51.14 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.0
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+|+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999995 58998863
No 102
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.15 E-value=0.028 Score=52.34 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=52.7
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC---eE
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RV 106 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v---~v 106 (324)
..||.|||+|.+|+.++..|+..|.. ++.|+|- .+.|++..+.-|+...|.. ++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~----------------------~~~~~~g~a~Dl~~~~~~~~~~~v 60 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV----------------------VEDKLKGEAMDLQHGSAFLKNPKI 60 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHHHHHhhccCCCCEE
Confidence 35899999999999999999999985 5999886 3335555566666665432 22
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
... . ..+.++++|+||.+..
T Consensus 61 ~~~-~-----dy~~~~~adivvitaG 80 (312)
T cd05293 61 EAD-K-----DYSVTANSKVVIVTAG 80 (312)
T ss_pred EEC-C-----CHHHhCCCCEEEECCC
Confidence 221 1 1234899999998765
No 103
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.14 E-value=0.017 Score=52.72 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=30.5
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+.+|+|+|+||.+..++..|...|+.+++|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999875
No 104
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.13 E-value=0.019 Score=53.67 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++..||.|||+|.+|+.++..++..|+.++.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 56689999999999999999999999866999987
No 105
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.13 E-value=0.015 Score=54.30 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.++.+|.|||+|.+|+.++..|+..|+..+.|+|-
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence 35679999999999999999999999888999997
No 106
>PLN02602 lactate dehydrogenase
Probab=96.12 E-value=0.024 Score=53.61 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=52.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC---CeEe
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM---VRVS 107 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~---v~v~ 107 (324)
.+|.|||+|.+|+.+|..|+..|+. ++.|+|- .+.|++..+--|+...|. +++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi----------------------~~~~~~g~a~DL~~~~~~~~~~~i~ 95 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV----------------------NPDKLRGEMLDLQHAAAFLPRTKIL 95 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------CCchhhHHHHHHHhhhhcCCCCEEE
Confidence 6999999999999999999999984 6999886 333455555556655432 3332
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCC
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
.. . ..+.++++|+||.+...
T Consensus 96 ~~-~-----dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 96 AS-T-----DYAVTAGSDLCIVTAGA 115 (350)
T ss_pred eC-C-----CHHHhCCCCEEEECCCC
Confidence 21 1 13458899999998653
No 107
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.12 E-value=0.02 Score=53.19 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=26.0
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEE
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lv 61 (324)
.||+|+|+|++|+..+-.|+++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 37999999999999999999999 767665
No 108
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.09 E-value=0.016 Score=53.29 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=28.9
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|.+|+.+|..|+..|.. ++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCC
Confidence 5799999999999999999999975 9999863
No 109
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.09 E-value=0.038 Score=53.92 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=61.5
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
+...+|+|+|+|.+|..+++.|...|.. ++++|.+. .+.+ .+++..+.+.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~----------------------~~~~----~~~~~~~~~~~-- 279 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP----------------------ERAE----ELAEELPNTLV-- 279 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH----------------------HHHH----HHHHHCCCCeE--
Confidence 5678999999999999999999999986 88887632 1222 22222223322
Q ss_pred eeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565 109 EKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152 (324)
Q Consensus 109 ~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip 152 (324)
...+... .....++++|.||.++++......+...|++ .+.+
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~--~~~~ 324 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKR--LGAK 324 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHH--hCCC
Confidence 2222222 2234467899999998877777777777888 5544
No 110
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.016 Score=53.27 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=29.8
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
++|.|||+|..|+.+|.+|+++|.. ++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCH
Confidence 4799999999999999999999986 99998743
No 111
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.05 E-value=0.032 Score=51.82 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=28.1
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence 699999999999999999999975 8888774
No 112
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.037 Score=51.35 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=28.1
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+|.|||+|.+|+.++..|+.+|. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 479999999999999999999997 4888886
No 113
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.04 E-value=0.038 Score=56.43 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=63.0
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|.- +++.+ ++. ..+ ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~----------------------~v~~~----~~~--g~~--v~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPD----------------------HIETL----RKF--GMK--VFY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHH----------------------HHHHH----Hhc--CCe--EEE
Confidence 57999999999999999999999986 889888432 22222 221 122 233
Q ss_pred CCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565 111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152 (324)
Q Consensus 111 ~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip 152 (324)
.+.++ ....-+++++.||.++++.+....+-..+|+...+++
T Consensus 449 GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 449 GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence 33222 1234467899999999999998888888888433443
No 114
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.03 E-value=0.037 Score=51.34 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.9
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~ 63 (324)
..+|+|||+|.+|..++..|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3579999999999999999999997 36888776
No 115
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.02 E-value=0.021 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=32.8
Q ss_pred HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...|++++|.|||+|.+|..+|+||..+|+. +++.|.
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r 47 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVR 47 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEEC
Confidence 4779999999999999999999999999995 666653
No 116
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.98 E-value=0.012 Score=57.20 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+...+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67799999999999999999999999998999866
No 117
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.98 E-value=0.032 Score=52.29 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=56.4
Q ss_pred hcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
...+++|+|+|+.|...+..+. ..|+.++.++|. ...|++.+++.+++..+ +++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~ 182 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV 182 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence 4578999999999998888875 568999999876 45577777777765432 33332
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~ 135 (324)
. +..++.++++|+||.|+-+..
T Consensus 183 ~-----~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 183 V-----NSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred e-----CCHHHHHhcCCEEEEccCCCC
Confidence 2 123556789999999997653
No 118
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.95 E-value=0.051 Score=49.19 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=26.3
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCC--CcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv--~~i~lvD~ 63 (324)
.+|.|||+|.+|+.++..|...|. ..+.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 469999999999999999999984 34566554
No 119
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.94 E-value=0.031 Score=52.08 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=56.5
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
...++|+|||+|..|...++.+.+ .|+.++++++. ...|++.+++.+++... .+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g~--~~~ 178 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQGF--DAE 178 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--ceE
Confidence 346899999999999999987765 68888999865 55678888888776422 222
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
.. ....+.+.++|+||.|+.+.
T Consensus 179 ~~-----~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 179 VV-----TDLEAAVRQADIISCATLST 200 (314)
T ss_pred Ee-----CCHHHHHhcCCEEEEeeCCC
Confidence 21 22355678999999888754
No 120
>PRK07574 formate dehydrogenase; Provisional
Probab=95.93 E-value=0.028 Score=53.85 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=59.9
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..|..++|.|||+|.+|..+|+.|...|+. +..+|...... +. ..+. .+
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~~~------------~~--------------~~~~----g~ 236 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRLPE------------EV--------------EQEL----GL 236 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCCch------------hh--------------Hhhc----Cc
Confidence 458999999999999999999999999985 77777522100 00 0011 11
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~ 157 (324)
... ...++.++.+|+|+.+. .+.+++..+++-. ..++.+.-+|+++
T Consensus 237 ~~~-----~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 237 TYH-----VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred eec-----CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 111 12367788899987776 5677777777532 2223444455544
No 121
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.92 E-value=0.046 Score=58.43 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=22.5
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAG 54 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~G 54 (324)
+.++|+|+|+|.+|..++.+|++.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~ 592 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVK 592 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCc
Confidence 4679999999999999999998863
No 122
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.90 E-value=0.0095 Score=52.85 Aligned_cols=37 Identities=14% Similarity=0.389 Sum_probs=35.0
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDR 64 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d 64 (324)
.+++.+|+|+|+|+.|..+++.|+..|+. +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57889999999999999999999999999 99999985
No 123
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.89 E-value=0.023 Score=53.14 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=30.3
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD 62 (324)
..|++++|.|||+|.+|..++++|..+|+. +.+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~-Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVD-VVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCE-EEEEE
Confidence 568889999999999999999999999984 55544
No 124
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.88 E-value=0.036 Score=51.96 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=56.5
Q ss_pred cCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
.++++|+|+|+.|...++.|. ..|+.++++++. ...|++.+++++++..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~~ 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTAA 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence 458999999999999999997 578899999865 55588888888865433 333322
Q ss_pred eCCCCCCchhhcCCccEEEEcCCC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
+...+.+.++|+||.|+.+
T Consensus 186 -----~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 -----TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred -----CCHHHHhccCCEEEEecCC
Confidence 2235567899999999866
No 125
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.86 E-value=0.064 Score=45.22 Aligned_cols=95 Identities=23% Similarity=0.215 Sum_probs=61.3
Q ss_pred EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
|+|+|+ |.+|..+++.|...|. +++.+=. ...|.+. .+ .++....+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R----------------------~~~~~~~--------~~--~~~~~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVR----------------------SPSKAED--------SP--GVEIIQGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEES----------------------SGGGHHH--------CT--TEEEEESC
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEec----------------------Cchhccc--------cc--ccccceee
Confidence 789997 8899999999999994 4665322 2222222 33 44455555
Q ss_pred CCCC--chhhcCCccEEEEcCCC----HHHHHHHHHHHHhccCCcc-EEEeeecCceE
Q 020565 113 LSSL--DGEFYDKFDVVVVSCCS----VTTKKLINEKCRKLSKRVA-FYTVDCRDSCG 163 (324)
Q Consensus 113 ~~~~--~~~~~~~~diVi~~~~~----~~~~~~l~~~~~~~~~~ip-~i~~~~~G~~g 163 (324)
+.+. ....++++|.||.+... ......+-+.|++ .+++ ++..++.|.++
T Consensus 48 ~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~--~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 48 LFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKK--AGVKRVVYLSSAGVYR 103 (183)
T ss_dssp TTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHH--TTSSEEEEEEETTGTT
T ss_pred ehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccc--cccccceeeeccccCC
Confidence 5442 35667899999998753 3344567778877 6664 45555555444
No 126
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.85 E-value=0.019 Score=53.67 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=66.6
Q ss_pred HhHHHHHh--hhHHH--HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565 13 LYDRQIRV--WGADA--QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88 (324)
Q Consensus 13 ry~Rqi~l--~g~~~--q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ 88 (324)
.|+++.+- |-... ...|..++|.|||+|.+|+.+++.|...|+. +..+|+-.-.... +.
T Consensus 120 ~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~~~---------------~~- 182 (324)
T COG0111 120 DADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRERA---------------GV- 182 (324)
T ss_pred hhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchhhh---------------cc-
Confidence 35555544 44311 2367899999999999999999999999997 8888872221100 00
Q ss_pred HHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565 89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD 157 (324)
Q Consensus 89 ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~ 157 (324)
..+. .....+++++..|+|++.. .+.+++-.|+..- .+++.+.-||+++
T Consensus 183 ---------------~~~~-----~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 183 ---------------DGVV-----GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred ---------------ccce-----ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 0000 0012367778888887665 4677777776542 3333555566655
No 127
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.84 E-value=0.05 Score=55.33 Aligned_cols=93 Identities=14% Similarity=0.304 Sum_probs=63.6
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|.- +++. +++.. ..++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~----------------------~v~~----~~~~g----~~v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS----------------------AVNL----MRKYG----YKVYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH----------------------HHHH----HHhCC----CeEEE
Confidence 57999999999999999999999996 899988432 2222 22211 12222
Q ss_pred CCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565 111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY 154 (324)
Q Consensus 111 ~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i 154 (324)
.+.++ ....-++++|.||.++++.+....+-..+|+...+.+.|
T Consensus 449 GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 449 GDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred eeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence 23222 123346789999999999998888888888743344444
No 128
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.84 E-value=0.1 Score=41.33 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=53.8
Q ss_pred cEEEEc-CchhHHHHHHHHHHhCCCcEEE-EcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 33 HILVCG-MKGTVAEFCKNIVLAGVGSLTL-MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~l-vD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
||.|+| .|-+|.++++.|...---+++. +.. .... |+.-.+... .......+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~---g~~~~~~~~----~~~~~~~~~~~~ 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSA---GKPLSEVFP----HPKGFEDLSVED 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTT---TSBHHHTTG----GGTTTEEEBEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------cccc---CCeeehhcc----ccccccceeEee
Confidence 689999 7889999999999832222222 222 1113 553332211 111122333322
Q ss_pred CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
...+.+++.|+||.|+++.........+ .+ .++++|+.+
T Consensus 59 -----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~--~g~~ViD~s 97 (121)
T PF01118_consen 59 -----ADPEELSDVDVVFLALPHGASKELAPKL-LK--AGIKVIDLS 97 (121)
T ss_dssp -----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HH--TTSEEEESS
T ss_pred -----cchhHhhcCCEEEecCchhHHHHHHHHH-hh--CCcEEEeCC
Confidence 2234458999999999887666665555 55 677666554
No 129
>PRK07680 late competence protein ComER; Validated
Probab=95.82 E-value=0.041 Score=50.10 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=26.1
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC---CcEEEEcC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~ 63 (324)
+|.|||+|.+|+.++..|...|. ..++++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 58999999999999999999984 35666654
No 130
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.81 E-value=0.1 Score=50.25 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR 105 (324)
Q Consensus 26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~ 105 (324)
+...++.||+|+|.|.+|.++++.|...|.. ++++|+|.++.. . ++ | ..
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~~-vvVId~d~~~~~-~-------~~-----g-----------------~~ 283 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQA-VTVIVPLGLEHR-L-------PD-----D-----------------AD 283 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCCC-EEEEECchhhhh-c-------cC-----C-----------------Cc
Confidence 3344578999999999999999999999974 888887632110 0 00 1 11
Q ss_pred EeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565 106 VSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV 151 (324)
Q Consensus 106 v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~i 151 (324)
....+.++ ....-+++++.||.++++.+....+-..+|+++.++
T Consensus 284 --vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~ 330 (393)
T PRK10537 284 --LIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDV 330 (393)
T ss_pred --EEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCC
Confidence 12222221 223346788999999988777777777788743333
No 131
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.80 E-value=0.038 Score=50.90 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.1
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|+|+|+|++|+.++..|+.+|.. +++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~-V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRD-VTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCc-eEEEec
Confidence 699999999999999999999964 888875
No 132
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.79 E-value=0.016 Score=48.91 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCchh-HHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGT-VAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~l-Gsei~k~L~~~Gv~~i~lvD~ 63 (324)
.|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478999999999985 8889999999998 5888764
No 133
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.72 E-value=0.096 Score=51.81 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=73.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc---HHHHHHHHHHhh-CCCCeEe
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT---IAEVCCDSLKDF-NPMVRVS 107 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~---ka~~~~~~l~~l-np~v~v~ 107 (324)
++|.+||+|-.|+.+|.||+..|.. ++++|.+.-..+.+... .... |.. -+....+..+++ .|.+-+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999999999985 88988743222222110 0000 110 112223333332 3554444
Q ss_pred EeeCCC--CCC---chhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 108 VEKGDL--SSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 108 ~~~~~~--~~~---~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.....- ++. ....++.-|+||++.. +++....+.+.+.+ +++.|+.+.+.|.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~--~Gi~fldapVSGG 136 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE--KGLLYLGMGVSGG 136 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeCCCcCC
Confidence 332211 111 1223456789999876 47777788899999 9999999998874
No 134
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.71 E-value=0.071 Score=48.67 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=50.2
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
+.+|.+||+|-+|..+++.|...|. .++.++|. .+.+++. +.+... +.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------------------~~~~~~~----l~~~~g-~~-- 52 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------------------NVSNLKN----ASDKYG-IT-- 52 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------------------CHHHHHH----HHHhcC-cE--
Confidence 4589999999999999999999985 24555544 2222222 222111 22
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~ 144 (324)
.. ....+..+++|+||.|.-+......+.++.
T Consensus 53 ~~-----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 53 IT-----TNNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred Ee-----CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 11 122345678899999998766665566554
No 135
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.71 E-value=0.046 Score=49.14 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=64.9
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHh----CC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHH
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS 96 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~----Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~ 96 (324)
++|++.||+++|+|+.|.-+++.|+.+ |+ ++|.++|..-+-..+- +++ .+.-++.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r--------~~l-------~~~~~~~ 85 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR--------EDL-------NPHKKPF 85 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT--------SSH-------SHHHHHH
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC--------ccC-------Chhhhhh
Confidence 569999999999999999999999999 99 8999999853322211 111 1112233
Q ss_pred HHhhCCCCeEeEeeCCCCCCchhhcCCc--cEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565 97 LKDFNPMVRVSVEKGDLSSLDGEFYDKF--DVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (324)
Q Consensus 97 l~~lnp~v~v~~~~~~~~~~~~~~~~~~--diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~ 162 (324)
.+..+|.-.. ....+.++.. |++|-++. ..-+...+...+.. ...|+|..-++...
T Consensus 86 a~~~~~~~~~--------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~--~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 86 ARKTNPEKDW--------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKH--NERPIIFPLSNPTP 145 (255)
T ss_dssp HBSSSTTT----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHH--SSSEEEEE-SSSCG
T ss_pred hccCcccccc--------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhcc--CCCCEEEECCCCCC
Confidence 3344443211 1234455565 78887763 22244455666655 55688777665443
No 136
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.69 E-value=0.04 Score=51.17 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=57.4
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
....+++|+|+|..|...++.+.. .|+.++.++|. ...|++.+++++++.+. .+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~~--~~~ 178 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALGP--TAE 178 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--eeE
Confidence 346889999999999999999975 68888988866 55688888888875432 222
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
. ...++.+.++|+||.|+-+.
T Consensus 179 ~------~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 179 P------LDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred E------CCHHHHhhcCCEEEEccCCC
Confidence 1 22355678999999998763
No 137
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.68 E-value=0.045 Score=39.90 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=40.2
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln 101 (324)
||+|||.|.+|+|+|..|+..|. ++++++...- ++ ... +..-.+.+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~---~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGF---DPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTS---SHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhc---CHHHHHHHHHHHHHCC
Confidence 68999999999999999999996 5899877211 11 122 5555677777888775
No 138
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.67 E-value=0.039 Score=54.26 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=71.7
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc--cHHHHHHHHHHhh-CCCCeEeE
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--TIAEVCCDSLKDF-NPMVRVSV 108 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~--~ka~~~~~~l~~l-np~v~v~~ 108 (324)
++|.|||+|..|+.+|.||+..|.. ++++|.+.-....+... ...- |. ..+....+.++.+ .|.+-+-.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~-V~v~dr~~~~~~~l~~~----~~~~---g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFK-ISVYNRTYEKTEEFVKK----AKEG---NTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHh----hhhc---CCcceecCCHHHHHhcCCCCCEEEEE
Confidence 5799999999999999999999984 99998754432222110 0000 10 0112223334433 34433332
Q ss_pred ee-CC-CCCC---chhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 109 EK-GD-LSSL---DGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 109 ~~-~~-~~~~---~~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.. .. +.+. ....++.-|+||++... +.......+.+.+ +++-|+.+++.|.
T Consensus 74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG 130 (470)
T PTZ00142 74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGG 130 (470)
T ss_pred eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCC
Confidence 21 11 1111 12345667899998764 5555566678888 8999999988874
No 139
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.66 E-value=0.049 Score=50.90 Aligned_cols=106 Identities=10% Similarity=0.053 Sum_probs=58.0
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|.|+|+|++|+.++..|+.+|.. +++++.+.-..+.++.+-- ....+ .| ..+.+.+++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~-V~l~~r~~~~~~~i~~~~~-~~~~~--~~-----------~~~~~~i~~------ 60 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKIS-VNLWGRNHTTFESINTKRK-NLKYL--PT-----------CHLPDNISV------ 60 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCe-EEEEecCHHHHHHHHHcCC-CcccC--CC-----------CcCCCCeEE------
Confidence 599999999999999999999954 7888763311111111000 00000 00 001111111
Q ss_pred CCCCchhhc-CCccEEEEcCCCHHHHHHHHHHHH-hccCCccEEEeeecCc
Q 020565 113 LSSLDGEFY-DKFDVVVVSCCSVTTKKLINEKCR-KLSKRVAFYTVDCRDS 161 (324)
Q Consensus 113 ~~~~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~-~~~~~ip~i~~~~~G~ 161 (324)
.....+.+ .++|+||.++-+......+.++.. .+..+.+++. .+.|+
T Consensus 61 -~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~-~~nGi 109 (326)
T PRK14620 61 -KSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI-CSKGI 109 (326)
T ss_pred -eCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE-EEcCe
Confidence 11122333 578999999988877776666654 3223444544 55665
No 140
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.66 E-value=0.069 Score=48.82 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=27.3
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|.|||+|.+|..+++.|...|. +++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999997 4888876
No 141
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.65 E-value=0.024 Score=53.26 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=32.2
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..|..++|.|||+|.+|..+|+.|...|.. +..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 358999999999999999999999999974 777776
No 142
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.62 E-value=0.023 Score=52.12 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=46.3
Q ss_pred EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--CeEe--E
Q 020565 34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVS--V 108 (324)
Q Consensus 34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--v~v~--~ 108 (324)
|||-|. |++|+++++.|+..|..++.++|. +.++--.+.+.+++..|+ ++.. .
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~----------------------~E~~l~~l~~~l~~~~~~~~v~~~~~~ 58 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDR----------------------DENKLYELERELRSRFPDPKVRFEIVP 58 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-----------------------HHHHHHHHHHCHHHC--TTCEEEEE-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCC----------------------ChhHHHHHHHHHhhcccccCcccccCc
Confidence 688885 789999999999999999999998 455555556666655544 3222 2
Q ss_pred eeCCCCC--CchhhcC--CccEEEEcC
Q 020565 109 EKGDLSS--LDGEFYD--KFDVVVVSC 131 (324)
Q Consensus 109 ~~~~~~~--~~~~~~~--~~diVi~~~ 131 (324)
.-.++.+ .....++ +.|+|+-+.
T Consensus 59 vigDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 59 VIGDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp -CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred eeecccCHHHHHHHHhhcCCCEEEECh
Confidence 2334433 2244455 778888543
No 143
>PLN03139 formate dehydrogenase; Provisional
Probab=95.62 E-value=0.039 Score=52.82 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..|..++|.|||+|.+|..+++.|...|+. +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 468999999999999999999999999986 777776
No 144
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.05 Score=49.94 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.2
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
++|.|||+|.+|..+|.+|+.+|.. ++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCH
Confidence 4799999999999999999999975 89998743
No 145
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.57 E-value=0.041 Score=50.05 Aligned_cols=73 Identities=10% Similarity=0.241 Sum_probs=49.0
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
..++++|+|+|++|..++..|+..|. +++++|. ...|++.+++.+.+.. .+. ..
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R----------------------~~~~~~~la~~~~~~~-~~~--~~ 169 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR----------------------TVSKAEELAERFQRYG-EIQ--AF 169 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHhhcC-ceE--Ee
Confidence 46789999999999999999999996 7888764 3335666666654432 111 11
Q ss_pred eCCCCCCchhhcCCccEEEEcCCC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
. .. +....++|+||.|+-.
T Consensus 170 ~--~~---~~~~~~~DivInatp~ 188 (270)
T TIGR00507 170 S--MD---ELPLHRVDLIINATSA 188 (270)
T ss_pred c--hh---hhcccCccEEEECCCC
Confidence 1 11 1123578999998854
No 146
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.53 E-value=0.023 Score=52.52 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=66.4
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~ 111 (324)
+|.|||+|..|+.++.+|+..|.. ++++|.+.-..+.+... |...+....+....+ .+++-+...+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~-V~~~dr~~~~~~~l~~~-----------g~~~~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHD-CVGYDHDQDAVKAMKED-----------RTTGVANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHc-----------CCcccCCHHHHHhhcCCCCEEEEEcCc
Confidence 699999999999999999999964 78888754332222211 111111111111111 24443333332
Q ss_pred CC-CCCc---hhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 DL-SSLD---GEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~~-~~~~---~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.. .+.. ...++.-++||++... +.....+.+.+.+ .++.|+.+.+.|.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~--~g~~~vda~vsGg 122 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE--KGIHLLDCGTSGG 122 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh--cCCeEEecCCCCC
Confidence 21 1111 1224445788888654 4555566677777 8899999888763
No 147
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.53 E-value=0.093 Score=52.89 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.1
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+.||+|+|+|.+|..+++.|...|+. ++++|.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECC
Confidence 57999999999999999999999986 8999883
No 148
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.51 E-value=0.016 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=27.7
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v 66 (324)
+|.|+|+|.+|..+|-.++++|.. ++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChH
Confidence 689999999999999999999976 999998443
No 149
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.47 E-value=0.029 Score=52.23 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=32.0
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..|..++|.|||+|.+|.++|+.+...|.. +..+|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECC
Confidence 469999999999999999999999988875 777776
No 150
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.44 E-value=0.11 Score=47.35 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=69.0
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHh----CC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHH
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS 96 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~----Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~ 96 (324)
++|++.||+++|+|+.|.-+++.|..+ |+ ++|.++|.+-+=..+ | .|+ ...|.+ .
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l---~~~~~~----~ 85 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDL---TPFKKP----F 85 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------Ccc---hHHHHH----H
Confidence 678999999999999999999999998 99 689999985433222 1 112 222322 2
Q ss_pred HHhhCCCCeEeEeeCCCCCCchhhcC--CccEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 97 LKDFNPMVRVSVEKGDLSSLDGEFYD--KFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 97 l~~lnp~v~v~~~~~~~~~~~~~~~~--~~diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.+..++ .. .....+.++ +.|++|-++. ..-+...|...+.. ...|+|.+-++..
T Consensus 86 a~~~~~--------~~-~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~--~~~PIIFaLSNPt 143 (279)
T cd05312 86 ARKDEE--------KE-GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKS--NERPIIFALSNPT 143 (279)
T ss_pred HhhcCc--------cc-CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhc--CCCCEEEECCCcC
Confidence 222332 00 112345566 7788887764 33345566666655 5568887766543
No 151
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.42 E-value=0.06 Score=50.37 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=28.2
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVP-VRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence 3799999999999999999999965 8888773
No 152
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.40 E-value=0.11 Score=46.96 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=24.4
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC---CcEEEE
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLM 61 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv---~~i~lv 61 (324)
+|.+||+|.+|+.++++|..+|. ..++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 245554
No 153
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.39 E-value=0.065 Score=51.94 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=32.5
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
.+..++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3578899999999999999999999999 588887643
No 154
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.37 E-value=0.12 Score=45.94 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=49.4
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCC---cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVG---SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~---~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
+..+|.|||+|.+|..+++.|...|.. .+.+++. . ...|++.+++. .+ +.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~----------------~-----~~~~~~~~~~~----~~-~~- 55 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR----------------S-----NVEKLDQLQAR----YN-VS- 55 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC----------------C-----CHHHHHHHHHH----cC-cE-
Confidence 457899999999999999999988732 2333322 0 11233322221 11 22
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~ 144 (324)
.. ....+.++++|+||.|+-+...+..+.++.
T Consensus 56 -~~-----~~~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 56 -TT-----TDWKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred -Ee-----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 11 122455678999999988766655555544
No 155
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.36 E-value=0.16 Score=44.61 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=51.1
Q ss_pred cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--CeEeEe
Q 020565 33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVSVE 109 (324)
Q Consensus 33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--v~v~~~ 109 (324)
+|.||| +|.+|+.+++.|+..| .++++++. ...+++.+.+........ +.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r----------------------~~~~~~~l~~~~~~~~~~~g~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR----------------------DLEKAEEAAAKALEELGHGGSDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc----------------------CHHHHHHHHHHHHhhccccCCCceEE
Confidence 699997 8999999999999999 45777654 222333333322211110 111111
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~ 144 (324)
.. ...+..+++|+||.|.-.......+.++.
T Consensus 59 ~~----~~~ea~~~aDvVilavp~~~~~~~l~~l~ 89 (219)
T TIGR01915 59 GA----DNAEAAKRADVVILAVPWDHVLKTLESLR 89 (219)
T ss_pred Ee----ChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence 00 12345678999999998776665555543
No 156
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.33 E-value=0.075 Score=42.70 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=44.5
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
.+-+|.|||+|-+|..+++.|..+|.. +.-+- .++ ...++++...-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~-----------------------srs--~~sa~~a~~~~~~~~~~~- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGVY-----------------------SRS--PASAERAAAFIGAGAILD- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEES-----------------------SCH--H-HHHHHHC--TT------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE-----------------------eCC--cccccccccccccccccc-
Confidence 456899999999999999999999964 43321 111 223444444444432211
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~ 144 (324)
..+.++.+|+||.++-+........+++
T Consensus 62 -------~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 -------LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -------TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred -------cccccccCCEEEEEechHHHHHHHHHHH
Confidence 2456789999999886555444444444
No 157
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.33 E-value=0.17 Score=45.81 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=53.3
Q ss_pred CcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
-+|.|+|+ |.+|..+++.+... ++.-..++|.+.-.. ... ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~-----------------~~~-------------~~~~i~-- 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL-----------------VGQ-------------GALGVA-- 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-----------------ccc-------------CCCCcc--
Confidence 37999999 99999999988764 454444455532110 000 001111
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV 156 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~ 156 (324)
.....++.++++|+||+++ ++.....+-..|.+ .++|++.+
T Consensus 50 ---~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~--~G~~vvig 90 (257)
T PRK00048 50 ---ITDDLEAVLADADVLIDFT-TPEATLENLEFALE--HGKPLVIG 90 (257)
T ss_pred ---ccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHH--cCCCEEEE
Confidence 1122344456789999888 44445677788888 89998844
No 158
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.31 E-value=0.058 Score=50.17 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=28.8
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~ 63 (324)
+|.|||+|.+|+.++..|+..|+ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 67999986
No 159
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.31 E-value=0.081 Score=49.89 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=59.8
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|.|+|+|.+|+.++..|+..| +++++..+.-....++..-. +.... +. -..+.+.+ ..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l---~~---------~~~l~~~i--~~--- 67 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYL---GN---------DVVLSDTL--RA--- 67 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccC---CC---------CcccCCCe--EE---
Confidence 57999999999999999999998 46665443222222221100 00000 10 00011111 11
Q ss_pred CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.....+.++++|+||.+.-+...+..+.++...+..+.++|... .|+
T Consensus 68 --t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~-kGi 114 (341)
T PRK12439 68 --TTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV-KGL 114 (341)
T ss_pred --ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE-eCC
Confidence 11223456789999999998877777776664433455566443 354
No 160
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.27 E-value=0.085 Score=48.96 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=29.0
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 69999999999999999999998 499998753
No 161
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.26 E-value=0.14 Score=49.85 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=54.9
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|+|+|+|.+|..+++.|...|.. ++++|.+ ..+.+.+ ++ .. .+.....+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~----------------------~~~~~~~----~~-~~--~~~~~~gd 51 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTD----------------------EERLRRL----QD-RL--DVRTVVGN 51 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEECC----------------------HHHHHHH----Hh-hc--CEEEEEeC
Confidence 799999999999999999999975 7888762 1122221 11 01 12233233
Q ss_pred CCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 113 LSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 113 ~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
..+ .....++++|.||.++.+......+-..+++
T Consensus 52 ~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~ 88 (453)
T PRK09496 52 GSSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKS 88 (453)
T ss_pred CCCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence 222 1122367899999998887777777777777
No 162
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.24 E-value=0.14 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.7
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGV 55 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv 55 (324)
..+|.+||+|.+|..+++.|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4579999999999999999999983
No 163
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.32 Score=44.71 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=29.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.++|.|||+|..|+.++.+|+.+|.. ++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~-V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYD-VLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCC
Confidence 46799999999999999999999974 8888863
No 164
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.053 Score=49.94 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=30.8
Q ss_pred HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+++++|+|.|+ ||+|.++++.|+..|.. +++++.
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r 48 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVR 48 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 34578889999996 89999999999999974 767654
No 165
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.18 E-value=0.042 Score=54.03 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=70.3
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~ 111 (324)
.|.|||+|..|..+|.||+..|.. ++++|.+.-....+..... ... +-.-+....+..+.+ .|.+-+...+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~-V~v~drt~~~~~~l~~~~~--~g~----~~~~~~s~~e~v~~l~~~dvIil~v~~ 73 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFT-VSVYNRTPEKTDEFLAEHA--KGK----KIVGAYSIEEFVQSLERPRKIMLMVKA 73 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHHHhhcc--CCC----CceecCCHHHHHhhcCCCCEEEEECCC
Confidence 478999999999999999999984 8888875543333321100 000 001111122333333 34543433322
Q ss_pred -C-CCCC---chhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 -D-LSSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 -~-~~~~---~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
. +.+. ....++.-|+||++.. .+.......+.+.+ +++-|+.+.+.|.
T Consensus 74 ~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG 127 (467)
T TIGR00873 74 GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGG 127 (467)
T ss_pred cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCC
Confidence 1 1111 1233456689999875 45555555667878 8999999998874
No 166
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.18 E-value=0.11 Score=45.15 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.|+.++|+|+|+|.+|..+++.|...|. ++++.|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 47788764
No 167
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.069 Score=49.56 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=42.9
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
.|+.++++|.|+ +|+|.++++.|+..|. ++.+++. ...|.+.+.+.+.+.+|..++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R----------------------~~~~~~~~~~~l~~~~~~~~v 67 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR----------------------NRAKGEAAVAAIRTAVPDAKL 67 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHHhCCCCce
Confidence 367789999996 6899999999999996 4777654 223444455555555555555
Q ss_pred eEeeCCCC
Q 020565 107 SVEKGDLS 114 (324)
Q Consensus 107 ~~~~~~~~ 114 (324)
....-++.
T Consensus 68 ~~~~~Dl~ 75 (313)
T PRK05854 68 SLRALDLS 75 (313)
T ss_pred EEEEecCC
Confidence 54444443
No 168
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.17 E-value=0.17 Score=46.55 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.8
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 58888873
No 169
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.094 Score=46.87 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=51.6
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
+|++++|+|.|+ |++|.++++.|+..|.. +.++|. ...+.+.+.+.+++.++..++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r----------------------~~~~~~~~~~~~~~~~~~~~~ 60 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADL----------------------DAALAERAAAAIARDVAGARV 60 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhccCCceE
Confidence 367889999996 78999999999999975 777664 223444555555554444455
Q ss_pred eEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565 107 SVEKGDLSSL--DGE-------FYDKFDVVVVSC 131 (324)
Q Consensus 107 ~~~~~~~~~~--~~~-------~~~~~diVi~~~ 131 (324)
..+..++.+. ... .+...|++|.+.
T Consensus 61 ~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 61 LAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred EEEEccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 5555555431 111 123567777654
No 170
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.14 E-value=0.032 Score=41.41 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=33.6
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+..++++|+|+|.+|..++..|...|..+++++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999998888999988
No 171
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.12 E-value=0.12 Score=48.66 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHH-hCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~-~Gv~~i~lvD~ 63 (324)
.|++++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 588899999998 7999999999985 58999999865
No 172
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.10 E-value=0.1 Score=49.04 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=55.3
Q ss_pred cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
.++++|+|+|+.|...+..|.. .|+.++++++. ...|++.+++.+++..+ +.+...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~g-~~v~~~ 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAELG-IPVTVA 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccC-ceEEEe
Confidence 3689999999999999999985 57889999865 55577888877765332 333222
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCH
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
+...+.+.++|+||.|+.+.
T Consensus 189 -----~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 189 -----RDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred -----CCHHHHHccCCEEEEeeCCC
Confidence 12355677899999998653
No 173
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.10 E-value=0.053 Score=50.59 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=58.0
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..|+.++|.|+|+|.+|.++++.|...|.. +..+|... ..+. ..
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~-------------~~~~---~~------------------- 186 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG-------------ASVC---RE------------------- 186 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc-------------cccc---cc-------------------
Confidence 468999999999999999999999988885 66655310 0001 00
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHHH-hccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCR-KLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~-~~~~~ip~i~~~ 157 (324)
.. ...++.++.+|+|+.+. .+.+++..+|+..- +++.+.-+|+++
T Consensus 187 -----~~-~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 187 -----GY-TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred -----cc-CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 00 12366778888887765 46777777776432 223455566655
No 174
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.07 E-value=0.096 Score=48.15 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=29.6
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
.+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 599998743
No 175
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.06 E-value=0.049 Score=52.80 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCHHHHHHhHHHHHhhhHHHH----HHHhcCcEEEEcCchhHHHHHHHHHHhCCC
Q 020565 6 LTEQETALYDRQIRVWGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVG 56 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~~~q----~~l~~~~VliiG~g~lGsei~k~L~~~Gv~ 56 (324)
|+--+.-.--+|-|+|+.+.- ..|++++|+|||+|+.|..-|-||--+|+.
T Consensus 7 ~~~~~~~~~~~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvn 61 (487)
T PRK05225 7 LNLRQQLAQLGKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLD 61 (487)
T ss_pred ccHHHHHHHhccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccce
Confidence 343333333455677887554 789999999999999999999999999996
No 176
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.05 E-value=0.08 Score=49.04 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=29.5
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.||.|||+|.+|+.++..++..|.+++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998768999987
No 177
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.05 E-value=0.022 Score=48.45 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 25 ~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
....|..++|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 3468999999999999999999999999999 588888743
No 178
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.21 Score=45.65 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=28.9
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999998 58898864
No 179
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.99 E-value=0.089 Score=51.88 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++..+|+|+|.|++|.++|..|...|.. ++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5677899999999999999999999985 9998863
No 180
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.98 E-value=0.075 Score=49.76 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=51.5
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM 103 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~ 103 (324)
.||.|||+ |.+|+.++..|+..|+- ++.|+|-.. .+.|++..+--|.... |.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~--------------------~~~~a~g~a~Dl~~~~~~~ 63 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP--------------------AMKALEGVAMELEDCAFPL 63 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC--------------------cccccchHHHHHhhccccc
Confidence 58999998 99999999999999974 588887610 2233444455555554 33
Q ss_pred CeEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565 104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
.. .. .+.....+.++++|+||.+...
T Consensus 64 ~~-~~---~i~~~~~~~~~daDvVVitAG~ 89 (323)
T TIGR01759 64 LA-GV---VATTDPEEAFKDVDAALLVGAF 89 (323)
T ss_pred cC-Cc---EEecChHHHhCCCCEEEEeCCC
Confidence 22 11 1112235678899999988764
No 181
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.97 E-value=0.097 Score=48.66 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
+.+|+|+|+|++|+.++..|+.+|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 3589999999999999999999995 588887654
No 182
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.96 E-value=0.15 Score=47.94 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..|+.++|.|||+|.+|..+|+.|...|.. +..+|...-. .. + .+.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~~~~-------------~~---~----------------~~~- 187 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAYPNK-------------DL---D----------------FLT- 187 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCChhH-------------hh---h----------------hhh-
Confidence 458899999999999999999999999974 8888752100 00 0 000
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcCC-CHHHHHHHHHHH-HhccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSCC-SVTTKKLINEKC-RKLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~~-~~~~~~~l~~~~-~~~~~~ip~i~~~ 157 (324)
......+.++++|+|+.+.- +.+++..+++-. ..++.+..+|+++
T Consensus 188 ------~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 ------YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred ------ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 11123567889999988875 455666665433 2333455566555
No 183
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.94 E-value=0.19 Score=48.55 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+...+|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467899999999999999999999999 58888763
No 184
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.93 E-value=0.11 Score=46.74 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCC----------cEEEEcCCcc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG----------SLTLMDDRVV 66 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~----------~i~lvD~d~v 66 (324)
++|++.||+++|+|+.|.-+++.|..+|+. +|.++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 579999999999999999999999999997 8999998643
No 185
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.92 E-value=0.064 Score=51.20 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+...+|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 59998873
No 186
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.92 E-value=0.052 Score=50.17 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=67.2
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~ 111 (324)
+|.+||+|.+|..++++|...|.. ++++|.+.-....+. .. |...+....+.+++. ++++-+...+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~--------~~---g~~~~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHE-VVGYDVNQEAVDVAG--------KL---GITARHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHH--------HC---CCeecCCHHHHHHhCCCCCEEEEEecC
Confidence 699999999999999999999975 888887532211111 11 222222222222222 23444433332
Q ss_pred C-C-CCCchh---hcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 D-L-SSLDGE---FYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~-~-~~~~~~---~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
. . .+.... .++.-.+||+++ .++.....+.+.+.+ +++.|+++.+.|.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~vdapV~G~ 123 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE--RGIHYVDCGTSGG 123 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH--cCCeEEeCCCCCC
Confidence 2 1 111112 233445888874 456677778888888 8888998777765
No 187
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.91 E-value=0.12 Score=49.19 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=61.5
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC--
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-- 101 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-- 101 (324)
...+|.|+|+|+.|+.+|..|+..|. .+++++..+. ++. ++.-++.+.+. ..|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~--~~~~~~~in~~--~~N~~ 70 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVE--GEKLSDIINTK--HENVK 70 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------ccc--chHHHHHHHhc--CCCcc
Confidence 34589999999999999999999984 3567764321 110 22222221111 112
Q ss_pred --CCCeEeEeeCCC--CCCchhhcCCccEEEEcCCCHHHHHHHHHHHH--hccCCccEEEeeecCc
Q 020565 102 --PMVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCR--KLSKRVAFYTVDCRDS 161 (324)
Q Consensus 102 --p~v~v~~~~~~~--~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~--~~~~~ip~i~~~~~G~ 161 (324)
|.+++ +..+ +....+.+++.|+||.+.-+...+..+.++.. .+..+.++|++ +-|+
T Consensus 71 ylp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~-aKGI 132 (365)
T PTZ00345 71 YLPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL-TKGI 132 (365)
T ss_pred cCCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE-eCCc
Confidence 22221 1111 12234567899999999988777766666543 22234445544 3443
No 188
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.91 E-value=0.19 Score=49.86 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=28.9
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 479999999999999999999998 48998873
No 189
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=94.90 E-value=0.16 Score=46.18 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.0
Q ss_pred cEEEEcCchhHHHHHHHHHHhC--CCcEEEEcCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAG--VGSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~G--v~~i~lvD~d 64 (324)
+|.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 7999999999999999998764 3334456653
No 190
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.90 E-value=0.19 Score=45.89 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=53.4
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
+|.|||+|.+|..+++.|...|. .++.+++.+. ..+.+ .+.+..+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~---------------------~~~~~----~l~~~~~~~~~--- 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK---------------------NEHFN----QLYDKYPTVEL--- 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc---------------------HHHHH----HHHHHcCCeEE---
Confidence 69999999999999999999983 4566665421 11111 12222222221
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT 155 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~ 155 (324)
.....+..+++|+||.|.-+......+.++...+..+..+|+
T Consensus 55 ----~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS 96 (277)
T PRK06928 55 ----ADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVS 96 (277)
T ss_pred ----eCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 112234567899999998876666556555432223444554
No 191
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.88 E-value=0.085 Score=50.36 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV 104 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v 104 (324)
++|++.+|++.|+|+-|..+++.|..+|+. +|.++|..-+-..+...- +. ++.|.+.+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~------~~---~~~k~~~a~~~~~~~~--- 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDL------TM---NQKKYAKAIEDTGERT--- 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCccc------cc---chHHHHHHHhhhcccc---
Confidence 689999999999999999999999999998 999999864433322110 12 5556654433322222
Q ss_pred eEeEeeCCCCCCchhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
. .+-+.+.|+.|-++.. .-+..++.+.+.. |.|.+-++..
T Consensus 263 ~------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~-----PiIfalaNP~ 303 (432)
T COG0281 263 L------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH-----PIIFALANPT 303 (432)
T ss_pred c------------cccccCCCEEEEcCCCCCcCHHHHHHhccC-----CEEeecCCCC
Confidence 0 1135677888877764 2234455555533 7776655543
No 192
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.87 E-value=0.067 Score=48.47 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=47.3
Q ss_pred EEEEcC-chhHHHHHHHHHHhC--C-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC---CCeE
Q 020565 34 ILVCGM-KGTVAEFCKNIVLAG--V-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVRV 106 (324)
Q Consensus 34 VliiG~-g~lGsei~k~L~~~G--v-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp---~v~v 106 (324)
|.|||+ |.+|..++..|+..| . .+++|+|.+. .|++.....+++... ..++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~----------------------~~l~~~~~dl~~~~~~~~~~~i 58 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE----------------------EKLKGVAMDLQDAVEPLADIKV 58 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc----------------------ccchHHHHHHHHhhhhccCcEE
Confidence 579999 899999999999999 4 5799998632 222333333444432 2344
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
+.. ....+.++++|+||.+..
T Consensus 59 ~~~-----~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 59 SIT-----DDPYEAFKDADVVIITAG 79 (263)
T ss_pred EEC-----CchHHHhCCCCEEEECCC
Confidence 331 112456789999999764
No 193
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.87 E-value=0.1 Score=48.96 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.7
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|+|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999996 48888864
No 194
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.86 E-value=0.16 Score=47.19 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=29.1
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
..+|.|+|+|.+|+.++++|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999996 48888764
No 195
>PRK09242 tropinone reductase; Provisional
Probab=94.83 E-value=0.18 Score=44.97 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=54.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
+++++++|.|+ |++|.++++.|+..|.. +++++. ...+.+...+.+...+|..++.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~ 63 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGAD-VLIVAR----------------------DADALAQARDELAEEFPEREVH 63 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeC----------------------CHHHHHHHHHHHHhhCCCCeEE
Confidence 56789999996 78999999999999974 777764 2223445556666666666666
Q ss_pred EeeCCCCCCc---------hhhcCCccEEEEcCC
Q 020565 108 VEKGDLSSLD---------GEFYDKFDVVVVSCC 132 (324)
Q Consensus 108 ~~~~~~~~~~---------~~~~~~~diVi~~~~ 132 (324)
....++.+.. .+.+...|+||.+..
T Consensus 64 ~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 64 GLAADVSDDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6666654311 122346788877664
No 196
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.82 E-value=0.29 Score=49.16 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=61.7
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC------
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN------ 101 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln------ 101 (324)
...+.|+|.|+ |++|..+++.|+..|.. +++++.+ ..+.+.+.+.+.++.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn----------------------~ekl~~l~~~l~~~~L~~~Ga 134 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRS----------------------AQRAESLVQSVKQMKLDVEGT 134 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCC----------------------HHHHHHHHHHhhhhccccccc
Confidence 34567999996 89999999999999975 6655431 112333333332211
Q ss_pred -CCCeEeEeeCCCCCC--chhhcCCccEEEEcCCCH---------------HHHHHHHHHHHhccCCc-cEEEeeecCc
Q 020565 102 -PMVRVSVEKGDLSSL--DGEFYDKFDVVVVSCCSV---------------TTKKLINEKCRKLSKRV-AFYTVDCRDS 161 (324)
Q Consensus 102 -p~v~v~~~~~~~~~~--~~~~~~~~diVi~~~~~~---------------~~~~~l~~~~~~~~~~i-p~i~~~~~G~ 161 (324)
+..++..+..++.+. ....+.+.|+||.+.... .....+-+.|+. .++ -||+.++.|.
T Consensus 135 ~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~--agVgRIV~VSSiga 211 (576)
T PLN03209 135 QPVEKLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATV--AKVNHFILVTSLGT 211 (576)
T ss_pred cccCceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHH--hCCCEEEEEccchh
Confidence 112344555555542 234567899999876421 112344456665 443 4666666553
No 197
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.82 E-value=0.068 Score=47.01 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=58.8
Q ss_pred HhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
++.++++++| +||+|-+++|.|...|+..+.+.|. .+| -.+..+|+++||.+++-
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~----~En--------------------~~a~akL~ai~p~~~v~ 58 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS----EEN--------------------PEAIAKLQAINPSVSVI 58 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh----hhC--------------------HHHHHHHhccCCCceEE
Confidence 4567788876 8999999999999999997777655 222 23456799999999999
Q ss_pred EeeCCCCCC--c----h---hhcCCccEEEEcC
Q 020565 108 VEKGDLSSL--D----G---EFYDKFDVVVVSC 131 (324)
Q Consensus 108 ~~~~~~~~~--~----~---~~~~~~diVi~~~ 131 (324)
.+.-++... . + ..+...|++|+..
T Consensus 59 F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 59 FIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 988887642 1 1 2245678888654
No 198
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.81 E-value=0.081 Score=50.63 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=54.2
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCc------EEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM 103 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~------i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~ 103 (324)
.||.|+|+ |.+|+.+|..|+..|+-. ++|+|- |+ .+.|++..+--|.... |.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~---~~~~a~g~a~DL~d~a~~~ 104 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ER---SKEALEGVAMELEDSLYPL 104 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------Cc---cchhhhHHHHHHHHhhhhh
Confidence 58999999 999999999999999854 556644 33 5556666666677655 44
Q ss_pred C-eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565 104 V-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 104 v-~v~~~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
. ++.... ...+.++++|+||.+...
T Consensus 105 ~~~v~i~~-----~~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 105 LREVSIGI-----DPYEVFEDADWALLIGAK 130 (387)
T ss_pred cCceEEec-----CCHHHhCCCCEEEECCCC
Confidence 3 222111 235678999999988754
No 199
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.76 E-value=0.2 Score=47.34 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=60.8
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC-------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh--CC-
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV-------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--NP- 102 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv-------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l--np- 102 (324)
+|.|||+|+.|+.+|..|+..|. .+++++..+. ++. +..- .+.+++- |+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~--~~~~----~~~in~~~~n~~ 59 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIE--GRNL----TEIINTTHENVK 59 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccC--CHHH----HHHHHhcCCCcc
Confidence 58999999999999999999882 4577765411 110 1111 2222221 11
Q ss_pred ---CCeEeEeeCCC--CCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565 103 ---MVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (324)
Q Consensus 103 ---~v~v~~~~~~~--~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~ 162 (324)
.++. +..+ +....+.++++|+||.+.-+...+..+.++...+..+.++|++ +-|+.
T Consensus 60 ylpgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~-tKGie 120 (342)
T TIGR03376 60 YLPGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC-IKGLE 120 (342)
T ss_pred ccCCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE-eCCcc
Confidence 1111 1111 1233566789999999988877766666654333355666654 55543
No 200
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.22 Score=43.96 Aligned_cols=78 Identities=24% Similarity=0.311 Sum_probs=50.5
Q ss_pred cCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 31 ~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
+++++|.| .|++|..+++.|+..|. ++++++.+ ..+.+.+.+.+.+.+|..++...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARR----------------------TDRLEELKAELLARYPGIKVAVA 58 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCceEEEE
Confidence 46799999 57899999999999995 57777652 12334445555666666666666
Q ss_pred eCCCCCCc---------hhhcCCccEEEEcC
Q 020565 110 KGDLSSLD---------GEFYDKFDVVVVSC 131 (324)
Q Consensus 110 ~~~~~~~~---------~~~~~~~diVi~~~ 131 (324)
..++.+.. ...+...|+||.+.
T Consensus 59 ~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 59 ALDVNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 66655321 11234567777654
No 201
>PLN02240 UDP-glucose 4-epimerase
Probab=94.74 E-value=0.29 Score=45.83 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++|+|.|. |.+|+.+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999996 8899999999999996 5777764
No 202
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.72 E-value=0.15 Score=46.29 Aligned_cols=63 Identities=29% Similarity=0.352 Sum_probs=52.0
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
++..+++|-|+ +|+|-++|+.|++-|.. +.|+-. -+.|-+.+++.|+... .+++.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~ 59 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVAR----------------------REDKLEALAKELEDKT-GVEVE 59 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence 46789999997 78999999999999986 666533 5568888999999888 78888
Q ss_pred EeeCCCCC
Q 020565 108 VEKGDLSS 115 (324)
Q Consensus 108 ~~~~~~~~ 115 (324)
++..++++
T Consensus 60 vi~~DLs~ 67 (265)
T COG0300 60 VIPADLSD 67 (265)
T ss_pred EEECcCCC
Confidence 88888764
No 203
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.70 E-value=0.13 Score=47.79 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=59.2
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|.|+|.|+-|+.+|+.|+..| ..++++-.+.-...+++.. +.+ .+.-|.+.+.. .-
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~---~~N-----------------~~yLp~i~lp~-~l 59 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET---REN-----------------PKYLPGILLPP-NL 59 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc---CcC-----------------ccccCCccCCc-cc
Confidence 57999999999999999999999 5577765533222222211 000 00111111111 11
Q ss_pred CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565 112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV 156 (324)
Q Consensus 112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~ 156 (324)
..+....+.++++|+|+.+.-+...+..+.++-..+..+.+++++
T Consensus 60 ~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~ 104 (329)
T COG0240 60 KATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA 104 (329)
T ss_pred ccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence 112344666788999999998877776666653222244555443
No 204
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.67 E-value=0.14 Score=46.98 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=62.6
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|.|||+|.+|..++.+|+..|.. ++++|.+.-....+.. . |...+....+.++ +.++-+...+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~~--------~---g~~~~~~~~e~~~--~~d~vi~~vp~ 68 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVYDRNPEAVAEVIA--------A---GAETASTAKAVAE--QCDVIITMLPN 68 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHH--------C---CCeecCCHHHHHh--cCCEEEEeCCC
Confidence 4799999999999999999999975 7888874322211111 0 1111111111121 22333333221
Q ss_pred CCC--CC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 DLS--SL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~~~--~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
... .. ....++.-.+||+++ ..+.....+.+.+.+ +++.|+++...|.
T Consensus 69 ~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~--~g~~~~d~pv~g~ 125 (296)
T PRK11559 69 SPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKA--KGIEMLDAPVSGG 125 (296)
T ss_pred HHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHH--cCCcEEEcCCCCC
Confidence 110 00 011223345666554 456666778888877 7888888776653
No 205
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.67 E-value=0.11 Score=48.09 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=28.2
Q ss_pred EEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
|.|||+|.+|+.++..|+..|..+++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987689999985
No 206
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.079 Score=46.93 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=79.0
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE--ee
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EK 110 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~--~~ 110 (324)
++.+||+|-.|..++++|...|.. +...|-+.-..+.+... |-.-+..+.+.+.++.+.-.|-. ..
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~~-----------ga~~a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKDE-----------GATGAASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHhc-----------CCccccCHHHHHHhcCCCcEEEEEccC
Confidence 477899999999999999999986 77777655444444322 44444556677777766544332 12
Q ss_pred CCCCC----CchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 111 GDLSS----LDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 111 ~~~~~----~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
.++++ ....+++.-|+||+... +.....+-.+...+ +++-|+++++.|
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSG 122 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSG 122 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCC
Confidence 22332 23456788899999865 56666666667777 899999999987
No 207
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.65 E-value=0.2 Score=48.94 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=26.9
Q ss_pred cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+|+||| +|.+|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999996 48887753
No 208
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.24 Score=48.45 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=28.6
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++|+|+|.|+.|..+|+.|...|. ++++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 479999999999999999999997 58888863
No 209
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.58 E-value=0.14 Score=46.24 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=21.6
Q ss_pred cEEEEcCchhHHHHHHHHHHhCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGV 55 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv 55 (324)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999985
No 210
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.55 E-value=0.066 Score=53.58 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.8
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567889999999999999999999999 7988764
No 211
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.52 E-value=0.075 Score=49.26 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=30.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d 64 (324)
.||.|+|+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 3799999999999999999999999 99999873
No 212
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.51 E-value=0.03 Score=50.55 Aligned_cols=119 Identities=9% Similarity=0.074 Sum_probs=68.3
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEE---EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLT---LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~---lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
.||.|||||.+|..+++.|..-+...+. +.|.+.-....+. +..++-.-.+.|....|++-++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------~~~~~~~~l~~ll~~~~DlVVE~ 69 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------GRVALLDGLPGLLAWRPDLVVEA 69 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------ccCcccCCHHHHhhcCCCEEEEC
Confidence 5899999999999999998654332232 3343221111111 11111111334445667777765
Q ss_pred eeCC-CCCCchhhcC-CccEEEEcCC---CHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565 109 EKGD-LSSLDGEFYD-KFDVVVVSCC---SVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (324)
Q Consensus 109 ~~~~-~~~~~~~~~~-~~diVi~~~~---~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g 163 (324)
-... +.+.....++ +.|+|+.+.. +......+.+.|++.+.++.+-++...|+.+
T Consensus 70 A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~ 129 (267)
T PRK13301 70 AGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDY 129 (267)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHH
Confidence 3322 3345566665 7999998865 5557788999998844444444444444433
No 213
>PLN02427 UDP-apiose/xylose synthase
Probab=94.50 E-value=0.19 Score=48.00 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+.++..+|+|.|+ |-+|+.+++.|+..|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4566778999996 779999999999985235777764
No 214
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.48 E-value=0.25 Score=46.90 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.0
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+|.|||+|.+|..+++.|...|. .+.++|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence 369999999999999999999997 4677765
No 215
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.37 E-value=0.062 Score=50.28 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=29.3
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~ 63 (324)
-.||.|||+ |.+|+.++..|+..|+- ++.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 358999999 99999999999999985 5999886
No 216
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.22 Score=49.09 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 25 ~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+...+..++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus 9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 3445677899999999999999999999998 6888885
No 217
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.34 E-value=0.32 Score=36.93 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHhhCCCCeEeEe--eCCCCCC---chhhcCCccEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 88 TIAEVCCDSLKDFNPMVRVSVE--KGDLSSL---DGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 88 ~ka~~~~~~l~~lnp~v~v~~~--~~~~~~~---~~~~~~~~diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
.+.....+.+++.+ .+...+ ....... .+..++..|+||+.++ +......+.+.|++ .++|++.+...|
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk--~~ip~~~~~~~~ 85 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK--YGIPIIYSRSRG 85 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH--cCCcEEEECCCC
Confidence 55666677777755 444455 2222222 4667788999999887 78888999999999 999999988776
Q ss_pred ce
Q 020565 161 SC 162 (324)
Q Consensus 161 ~~ 162 (324)
..
T Consensus 86 ~~ 87 (97)
T PF10087_consen 86 VS 87 (97)
T ss_pred HH
Confidence 54
No 218
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.32 E-value=0.13 Score=47.24 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.++.++|+|+|.|+ +|..++..|...|. .+++++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46788999999999 99999999999998 7998764
No 219
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.29 E-value=0.34 Score=46.92 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=33.4
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA 73 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r 73 (324)
+|.|||+|-+|..++.+|+..|.. ++++|.+.-....++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~-V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHE-VTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCe-EEEEECCHHHHHHhhc
Confidence 699999999999999999999985 8999886655555544
No 220
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.28 E-value=0.22 Score=45.96 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=63.9
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|.|||+|.+|..++.+|+..|. .++++|.+.-..+.+... |...+....+.+++ -++-+...+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~-----------g~~~~~s~~~~~~~--aDvVi~~vp~ 67 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDK-----------GATPAASPAQAAAG--AEFVITMLPN 67 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHc-----------CCcccCCHHHHHhc--CCEEEEecCC
Confidence 379999999999999999999996 588988754333222110 21111111111211 1222222222
Q ss_pred CC--CCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 112 DL--SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 112 ~~--~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.. ... ....++.-.+||+++ .++.....+.+...+ .++.|+++...|.
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~--~g~~~ldapV~g~ 124 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQA--KGFSMMDVPVGRT 124 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEEccCCCC
Confidence 10 000 011123334566554 467777788888888 8888888877664
No 221
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.28 E-value=0.23 Score=45.75 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=31.6
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.|..++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999999999999999999999997 7888766
No 222
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.27 E-value=0.16 Score=47.07 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=29.7
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+|.|||+|-+|+.+|..|+..|.++++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999997
No 223
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.24 E-value=0.19 Score=46.19 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=62.3
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|.|||+|.+|+.++.+|+..|. +++++|.+.-..+.+.. . |...+....+.++ +.++-+...+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~--------~---g~~~~~~~~~~~~--~aDivi~~vp~~ 66 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLA--------A---GAVTAETARQVTE--QADVIFTMVPDS 66 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------C---CCcccCCHHHHHh--cCCEEEEecCCH
Confidence 58999999999999999999997 48888875422222111 1 2222211222222 223333333221
Q ss_pred C--CCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 113 L--SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 113 ~--~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
. ... ....+..-.+||+++ .++.....+.+.+++ .++.|+.+...|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~--~g~~~~~~pv~g 121 (291)
T TIGR01505 67 PQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKE--KGIDYLDAPVSG 121 (291)
T ss_pred HHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEecCCCC
Confidence 1 000 011223334666654 455566678888888 788888865554
No 224
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.17 E-value=0.11 Score=51.21 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=30.3
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|+|+||+|..+++.|+..|. +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 567899999999999999999999998 7888764
No 225
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.13 E-value=0.14 Score=47.71 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=29.2
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d 64 (324)
+|.|||+ |.+|+.+|..|+..|+ .++.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999999997 579999985
No 226
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.12 E-value=0.075 Score=46.63 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=62.3
Q ss_pred cEEEEcCchhHHHHHHHHHHh--CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 33 HILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
+|.|||||++|..+++.+-.- ++.-+.+.|.+.-...++.+.+ +..+. ..|-++-+.+.+-+..
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------~~~~~----s~ide~~~~~DlvVEa 67 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------GRRCV----SDIDELIAEVDLVVEA 67 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------CCCcc----ccHHHHhhccceeeee
Confidence 689999999999998866533 2454555566443333332221 11111 1122222333332222
Q ss_pred CCC---CCCchhhc-CCccEEEEcCC---CHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565 111 GDL---SSLDGEFY-DKFDVVVVSCC---SVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (324)
Q Consensus 111 ~~~---~~~~~~~~-~~~diVi~~~~---~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g 163 (324)
... .++....+ .+.|++|.+.. ++..+.++-+.|+..+..+-+.++...|+.+
T Consensus 68 AS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~ 127 (255)
T COG1712 68 ASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDA 127 (255)
T ss_pred CCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHH
Confidence 221 22333444 45899988876 3445666777777744555566666555554
No 227
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.11 E-value=0.38 Score=36.86 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=53.2
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
++.+|+-+||| .|......+.+..-.+++-+|. ...-.+.+.+++.+....-+++..
T Consensus 1 p~~~vLDlGcG-~G~~~~~l~~~~~~~~v~gvD~----------------------s~~~~~~a~~~~~~~~~~~~i~~~ 57 (112)
T PF12847_consen 1 PGGRVLDLGCG-TGRLSIALARLFPGARVVGVDI----------------------SPEMLEIARERAAEEGLSDRITFV 57 (112)
T ss_dssp TTCEEEEETTT-TSHHHHHHHHHHTTSEEEEEES----------------------SHHHHHHHHHHHHHTTTTTTEEEE
T ss_pred CCCEEEEEcCc-CCHHHHHHHhcCCCCEEEEEeC----------------------CHHHHHHHHHHHHhcCCCCCeEEE
Confidence 36789999998 4666665555444455888887 333456666777555555677777
Q ss_pred eCCCCCCchhhcCCccEEEEcC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSC 131 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~ 131 (324)
..++ ....+...+||+|++..
T Consensus 58 ~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 58 QGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp ESCC-HGGTTTSSCEEEEEECS
T ss_pred ECcc-ccCcccCCCCCEEEECC
Confidence 7776 33455567899999877
No 228
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.34 Score=43.38 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=52.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
++++.++|.|+ +++|.++++.|+..|.. +.+++.+ ..+.+.+.+.+.+..|..++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~ 62 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRD----------------------EERLASAEARLREKFPGARLL 62 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC----------------------HHHHHHHHHHHHhhCCCceEE
Confidence 56789999997 68999999999999985 7776652 223344455566655555555
Q ss_pred EeeCCCCCCc---------hhhcCCccEEEEcCC
Q 020565 108 VEKGDLSSLD---------GEFYDKFDVVVVSCC 132 (324)
Q Consensus 108 ~~~~~~~~~~---------~~~~~~~diVi~~~~ 132 (324)
....++.+.. .+.+...|++|.+..
T Consensus 63 ~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 63 AARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5555554311 112345678777653
No 229
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.09 E-value=0.067 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=29.5
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCc------EEEEcCC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~------i~lvD~d 64 (324)
.||+|+|+ |.+|+.++..|+..|+-+ ++|+|-.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999999865 9999874
No 230
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.09 E-value=0.32 Score=44.30 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=26.8
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCC-cEEEEcC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~ 63 (324)
+|.|||+|.+|..++..|...|.. .++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999973 5666665
No 231
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.25 Score=44.22 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHhcCcEEEEcC-c-hhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-K-GTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g-~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+++.+++|.|. | |+|..+++.|+..|.. ++++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 456789999997 5 7999999999999986 777654
No 232
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.05 E-value=0.53 Score=45.00 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=28.8
Q ss_pred CcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|+||| .|.+|..+++.|...|.. ++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence 6799999 999999999999999965 8999864
No 233
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.03 E-value=1.8 Score=33.40 Aligned_cols=92 Identities=10% Similarity=0.093 Sum_probs=51.7
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
..+|+-+|||. |.-....+...+-.+++-+|. .....+.+.+.+++..- -+++...
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~----------------------s~~~~~~a~~~~~~~~~-~~~~~~~ 75 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIER----------------------NPEALRLIERNARRFGV-SNIVIVE 75 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcC----------------------CHHHHHHHHHHHHHhCC-CceEEEe
Confidence 56899999975 776666655555577888885 33445555555555431 1344443
Q ss_pred CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
.+...........||+|+...........+....+.
T Consensus 76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~ 111 (124)
T TIGR02469 76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRR 111 (124)
T ss_pred ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHH
Confidence 333221122335899999876433333344444444
No 234
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.02 E-value=0.28 Score=45.81 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=43.0
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
.++.++|.|+ ||+|.++++.|+..|.. +.+++. ...+.+.+++.+++..+..++..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R----------------------~~~~l~~~~~~l~~~~~~~~~~~ 108 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVAR----------------------NPDKLKDVSDSIQSKYSKTQIKT 108 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEEC----------------------CHHHHHHHHHHHHHHCCCcEEEE
Confidence 4688999996 78999999999999984 877765 23345556666766665555544
Q ss_pred eeCCC
Q 020565 109 EKGDL 113 (324)
Q Consensus 109 ~~~~~ 113 (324)
...++
T Consensus 109 ~~~Dl 113 (320)
T PLN02780 109 VVVDF 113 (320)
T ss_pred EEEEC
Confidence 43333
No 235
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.02 E-value=0.36 Score=44.99 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=28.1
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEc
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD 62 (324)
|++++|.|||+|.+|..++++|..+|+. +++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 5678999999999999999999999984 44433
No 236
>PLN00106 malate dehydrogenase
Probab=94.02 E-value=0.14 Score=48.01 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.5
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCc
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV 65 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~ 65 (324)
...||+|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4568999999 9999999999999888 4699999754
No 237
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.00 E-value=0.39 Score=43.79 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=25.7
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHh--CCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~ 63 (324)
+..||.|||+|.+|..++++|... |+.-..++|.
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr 40 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR 40 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 456899999999999999999864 5432235565
No 238
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.00 E-value=0.69 Score=43.07 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhC-CCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAG-VGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~G-v~~i~lvD~ 63 (324)
+++++|+|.|. |++|+.+++.|+..| ..+++++|.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r 38 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSR 38 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45678999996 789999999999987 446887775
No 239
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.99 E-value=0.16 Score=47.08 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=48.7
Q ss_pred EEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeEeeCC
Q 020565 36 VCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSVEKGD 112 (324)
Q Consensus 36 iiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~~~~~ 112 (324)
|||+|.+|+.++..|+..|+. +|.|+|- .+.|++..+.-|+...+.. .+....
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~-- 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI----------------------NKDKAEGEAMDLQHAASFLPTPKKIRS-- 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCChhhHHHHHHHHhhcccCCCeEEec--
Confidence 689999999999999999984 6999876 3334555555566554322 122221
Q ss_pred CCCCchhhcCCccEEEEcCCC
Q 020565 113 LSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 113 ~~~~~~~~~~~~diVi~~~~~ 133 (324)
...+.++++|+||.+...
T Consensus 57 ---~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 57 ---GDYSDCKDADLVVITAGA 74 (299)
T ss_pred ---CCHHHHCCCCEEEECCCC
Confidence 124678899999988753
No 240
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.98 E-value=0.18 Score=47.10 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=30.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCC-cEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~-~i~lvD~ 63 (324)
++-.||.|+|+ |.+|+.++..|+..|.. ++.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 44569999999 99999999999987875 6999988
No 241
>PRK13529 malate dehydrogenase; Provisional
Probab=93.94 E-value=0.22 Score=49.64 Aligned_cols=132 Identities=12% Similarity=0.079 Sum_probs=76.1
Q ss_pred HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHHH----hCC------CcEEEEc
Q 020565 11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL----AGV------GSLTLMD 62 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~~----~Gv------~~i~lvD 62 (324)
++||..++..|..+-| ++|++.+|++.|+|+.|.-+|+.|+. .|+ ++|.++|
T Consensus 257 L~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD 336 (563)
T PRK13529 257 LERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVD 336 (563)
T ss_pred HHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence 4677777777644332 58889999999999999999999997 599 5899999
Q ss_pred CCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCc--cEEEEcCC--CHHHHH
Q 020565 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF--DVVVVSCC--SVTTKK 138 (324)
Q Consensus 63 ~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~--diVi~~~~--~~~~~~ 138 (324)
..-+-.++- .++ ...|..-+.. .++.-.... ........+.++.. |++|-++. ..-+..
T Consensus 337 ~~GLl~~~r--------~~l---~~~k~~fa~~----~~~~~~~~~--~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~e 399 (563)
T PRK13529 337 RQGLLTDDM--------PDL---LDFQKPYARK----REELADWDT--EGDVISLLEVVRNVKPTVLIGVSGQPGAFTEE 399 (563)
T ss_pred CCCeEeCCC--------Ccc---hHHHHHHhhh----ccccccccc--ccCCCCHHHHHhccCCCEEEEecCCCCCCCHH
Confidence 864332211 112 2223322221 121100000 00011234555555 78876664 233445
Q ss_pred HHHHHHHhccCCccEEEeeecCc
Q 020565 139 LINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 139 ~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
.|...+.. ...|+|.+-+...
T Consensus 400 vv~~Ma~~--~erPIIFaLSNPt 420 (563)
T PRK13529 400 IVKEMAAH--CERPIIFPLSNPT 420 (563)
T ss_pred HHHHHHhc--CCCCEEEECCCcC
Confidence 56666655 5557777665543
No 242
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.92 E-value=0.38 Score=45.05 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=30.2
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+|+|+|+|++|..++..+...|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5679999999999999999999999988887765
No 243
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.89 E-value=0.42 Score=46.78 Aligned_cols=105 Identities=10% Similarity=0.167 Sum_probs=62.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
-+..+|+|.|. |-+|+.+++.|...|.. ++.+|...... .+.+ ...+ .++ .++
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~----------~~~~-----------~~~~--~~~--~~~ 170 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGR----------KENV-----------MHHF--SNP--NFE 170 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCccc----------hhhh-----------hhhc--cCC--ceE
Confidence 35678999995 78999999999999975 66666422110 0000 0000 122 233
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCC---------CHHH--------HHHHHHHHHhccCCccEEEeeecCceEE
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCC---------SVTT--------KKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~---------~~~~--------~~~l~~~~~~~~~~ip~i~~~~~G~~g~ 164 (324)
....++. +..+.++|+||-+.. ++.. -..+-+.|++ .+++||.+++...||.
T Consensus 171 ~i~~D~~---~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~--~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 171 LIRHDVV---EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGD 239 (442)
T ss_pred EEECCcc---ChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHH--hCCEEEEECChHHhCC
Confidence 3333332 223457888886552 1111 1345678888 7789999998877763
No 244
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.29 Score=48.61 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++.++|+|+|.|+.|..+|+.|...|.. ++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGAR-LRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEEcCC
Confidence 4567899999999999999999999984 8888863
No 245
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.89 E-value=0.19 Score=48.80 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=70.3
Q ss_pred cEEEEcCchhHH-HHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 33 ~VliiG~g~lGs-ei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
||.|||.||.-+ ++++-|+. .++++|.|+|-|. ++.+.. -...+.+.+++.++..+++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~---------------v~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI---------------VGALAKRMVKKAGLPIKVH 64 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH---------------HHHHHHHHHHhhCCCeEEE
Confidence 789999999765 67777776 5678999999864 222111 2234555566677777776
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
.... ..+.++++|+||.+.. ..+.+..-.++..+ +|+ +-..+.|.-|.++
T Consensus 65 ~t~d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~~~--~Gi--~gqET~G~GG~~~ 116 (419)
T cd05296 65 LTTD-----RREALEGADFVFTQIRVGGLEARALDERIPLK--HGV--IGQETTGAGGFAK 116 (419)
T ss_pred EeCC-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHH--cCC--ccccCCCcchHHH
Confidence 6432 3677889999998864 44445445556666 655 3466677666443
No 246
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.88 E-value=0.28 Score=45.17 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=65.8
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
+|.+||+|-+|..++.+|...|. +++++|.+. ..+. +. .. |-..+....+..+ ..++-+......
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~-~~~~-----~~---~~---g~~~~~s~~~~~~--~advVi~~v~~~ 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP-VADE-----LL---SL---GAVSVETARQVTE--ASDIIFIMVPDT 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH-hHHH-----HH---Hc---CCeecCCHHHHHh--cCCEEEEeCCCh
Confidence 59999999999999999999997 578887653 1111 11 11 3322222222222 223333333221
Q ss_pred --CCCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 113 --LSSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 113 --~~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
..+. ....+..-.+||+++ .++.+.+.+.+.+.+ +++.|+.+-..|
T Consensus 67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~--~G~~~vdaPVsG 121 (292)
T PRK15059 67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNE--LGGDYLDAPVSG 121 (292)
T ss_pred HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEEecCCC
Confidence 0000 011123335777665 577788889999999 899999887666
No 247
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.29 Score=44.13 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=29.7
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 67789999997 7999999999999998 4777765
No 248
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.83 E-value=0.34 Score=43.83 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=26.8
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~ 63 (324)
.+.+|.|||+|.+|+.+++.|...|. .++.+.|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 34689999999999999999999874 22555544
No 249
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.2 Score=44.56 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 56788999996 78999999999999985 777665
No 250
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.82 E-value=0.41 Score=44.20 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=29.2
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+..+|+|+|+|++|...+..+...|...+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 5568999999999999998888899987777654
No 251
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.82 E-value=0.33 Score=47.29 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.6
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+++++|+|+|.|++|..+++.|+..|.. +++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 4578899999999999999999999975 8887753
No 252
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.81 E-value=0.18 Score=44.51 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=30.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999996 78999999999999986 8887763
No 253
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=93.78 E-value=0.35 Score=45.75 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcE--EEEcCCcc
Q 020565 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSL--TLMDDRVV 66 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i--~lvD~d~v 66 (324)
+.|+--.+.+|.|||+||-|+.++.+|.+.|+..+ ..+|.|.-
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~ 54 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQ 54 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHH
Confidence 34444456789999999999999999999998644 44788763
No 254
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.77 E-value=0.35 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=30.0
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+..++|+|+|.|+.|..+++.|...|.. +++.|.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~-v~~~d~ 36 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAE-VAAYDA 36 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 4567999999999999999999999975 888875
No 255
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.77 E-value=0.41 Score=43.52 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=24.4
Q ss_pred cEEEEc-CchhHHHHHHHHHH-hCCCcEEEEc
Q 020565 33 HILVCG-MKGTVAEFCKNIVL-AGVGSLTLMD 62 (324)
Q Consensus 33 ~VliiG-~g~lGsei~k~L~~-~Gv~~i~lvD 62 (324)
||.|+| +|.+|..+++.+.. .++.-+-++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 799999 59999999999985 5666555566
No 256
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.76 E-value=0.43 Score=47.46 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=29.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
-++|.|||+|..|+.+|.+|+.+|.. ++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence 35799999999999999999999986 8888863
No 257
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.75 E-value=0.18 Score=47.64 Aligned_cols=93 Identities=16% Similarity=0.021 Sum_probs=59.0
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
..+|+|+|+|++|--.+..+.+.|...+.++|.+ ..|.+.+++... ...+....
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~----------------------~~Rl~~A~~~~g----~~~~~~~~ 222 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS----------------------PERLELAKEAGG----ADVVVNPS 222 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC----------------------HHHHHHHHHhCC----CeEeecCc
Confidence 3379999999999999999999999999999872 223333322111 10110000
Q ss_pred CC-CCCCchhhc--CCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565 111 GD-LSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRV 151 (324)
Q Consensus 111 ~~-~~~~~~~~~--~~~diVi~~~~~~~~~~~l~~~~~~~~~~i 151 (324)
.+ ......+.- ..+|+||.|+.+..+.....++++. .+.
T Consensus 223 ~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~--gG~ 264 (350)
T COG1063 223 EDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRP--GGT 264 (350)
T ss_pred cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcC--CCE
Confidence 10 000011111 3699999999988877778888877 655
No 258
>PLN03075 nicotianamine synthase; Provisional
Probab=93.72 E-value=1.4 Score=40.68 Aligned_cols=112 Identities=10% Similarity=0.073 Sum_probs=63.7
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh---hCCCCe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVR 105 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~---lnp~v~ 105 (324)
..++|+-||||..|-...-.++..+- ++++=+|.+. .-.+.+++.+++ +.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~----------------------~ai~~Ar~~~~~~~gL~~r-- 178 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP----------------------SANDVARRLVSSDPDLSKR-- 178 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH----------------------HHHHHHHHHhhhccCccCC--
Confidence 78999999999876655555544443 3566666522 222333333322 2223
Q ss_pred EeEeeCCCCCCchhhcCCccEEEEcC----CCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 106 VSVEKGDLSSLDGEFYDKFDVVVVSC----CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 106 v~~~~~~~~~~~~~~~~~~diVi~~~----~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
++....+..+.. ..+.+||+|++.. +...-...+..+.+.+..|=.++.....|..+..|
T Consensus 179 V~F~~~Da~~~~-~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LY 242 (296)
T PLN03075 179 MFFHTADVMDVT-ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY 242 (296)
T ss_pred cEEEECchhhcc-cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcC
Confidence 444444433321 1256899998774 22334455666666554554566665688888766
No 259
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.69 E-value=0.16 Score=47.32 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.5
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCc
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV 65 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~ 65 (324)
||.|||+ |.+|+.+|..|+..|+ .++.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999998 5699999754
No 260
>PRK13018 cell division protein FtsZ; Provisional
Probab=93.67 E-value=0.44 Score=45.50 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV 65 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~ 65 (324)
...+.+|.|||+||-|+.++.+|...|+. .+..++.|.
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 45678999999999999999999999976 457778877
No 261
>PRK00811 spermidine synthase; Provisional
Probab=93.66 E-value=0.33 Score=44.58 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 9 ~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+.-.|.+.+.-...-... ...+||++|+|+ |......|...++.+++.||-
T Consensus 57 ~de~~Y~e~l~h~~~~~~~--~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEi 108 (283)
T PRK00811 57 RDEFIYHEMMTHVPLFAHP--NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEI 108 (283)
T ss_pred cchhhHHHHhhhHHHhhCC--CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeC
Confidence 3335676655443332221 457899999984 555555555568999999987
No 262
>PRK09330 cell division protein FtsZ; Validated
Probab=93.65 E-value=0.5 Score=45.19 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV 65 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~ 65 (324)
....+|.|||+||-|+.++.+|...|+. .+..++.|.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~ 49 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA 49 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence 3567899999999999999999999976 455567765
No 263
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.58 E-value=0.5 Score=46.38 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..+..++|+|+|.|..|..+++.|...|. .+++.|...-.. . ....+.|++.. +.+
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~-------------~--------~~~~~~l~~~g--i~~ 65 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEE-------------L--------GEVSNELKELG--VKL 65 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCcc-------------c--------hHHHHHHHhCC--CEE
Confidence 44667899999999999999999999997 488988633110 0 00112233322 232
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT 155 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~ 155 (324)
.. .. ...+.+.++|+||.+..=+... -+-..+++ .++|++.
T Consensus 66 ~~--~~---~~~~~~~~~dlVV~Spgi~~~~-p~~~~a~~--~~i~i~s 106 (458)
T PRK01710 66 VL--GE---NYLDKLDGFDVIFKTPSMRIDS-PELVKAKE--EGAYITS 106 (458)
T ss_pred Ee--CC---CChHHhccCCEEEECCCCCCCc-hHHHHHHH--cCCcEEe
Confidence 21 11 1134457899999886422222 23445667 7888874
No 264
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.56 E-value=0.45 Score=45.92 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
+..++|+|+|+|.+|..+++.+...|.. ++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCCh
Confidence 6788999999999999999999999985 88887644
No 265
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.53 E-value=0.4 Score=47.23 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+++++|+|+|+|-.|..+++.|...|.. +++.|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCC
Confidence 4678999999999999999999999987 7888864
No 266
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.51 E-value=0.18 Score=44.47 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
|++.+++|.|+ |++|..+++.|+..|.. ++++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999997 99999999999999974 8887753
No 267
>PRK05442 malate dehydrogenase; Provisional
Probab=93.51 E-value=0.11 Score=48.60 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=28.6
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~ 63 (324)
.||.|||+ |.+|+.++..|+..|+- ++.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 99999999999998884 5889886
No 268
>PLN02306 hydroxypyruvate reductase
Probab=93.50 E-value=0.29 Score=47.03 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=63.5
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-CC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-MV 104 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-~v 104 (324)
..|..++|.|+|+|.+|.++|+.|. ..|.. +..+|...-. ...+ +. ... |. .++.... .+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~~~~--~~~~-~~---~~~---~~--------~l~~~~~~~~ 222 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQST--RLEK-FV---TAY---GQ--------FLKANGEQPV 222 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCCCch--hhhh-hh---hhh---cc--------cccccccccc
Confidence 3589999999999999999999986 66874 7777763210 0000 00 000 10 0000000 01
Q ss_pred eEeEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565 105 RVSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD 157 (324)
Q Consensus 105 ~v~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~ 157 (324)
.+. .....+++++.+|+|+.+. .+.+++..+|+.. ..++.+.-||+++
T Consensus 223 ~~~-----~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 223 TWK-----RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred ccc-----ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 111 0123477888999998854 5778888888754 3334566677776
No 269
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.49 E-value=0.76 Score=43.06 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=25.1
Q ss_pred CcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~ 63 (324)
.+|+|.|+ |-+|+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~-~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW-EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC-eEEEEeC
Confidence 36999997 88999999999986 44 5777764
No 270
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.48 E-value=0.17 Score=44.65 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+++++|+|.| .|++|..+++.|+..|.. +++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 35678899999 588999999999999974 777665
No 271
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.45 E-value=0.68 Score=43.44 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+++++|+|.|. |.+|+.+++.|+..|.. ++.+|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCC
Confidence 45789999996 77999999999999964 7776653
No 272
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.44 E-value=0.28 Score=43.52 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
..|+..+|+|.|.|.+|..+++.|...|..-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45889999999999999999999999998866687763
No 273
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.37 E-value=0.42 Score=46.71 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.0
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+..|+|+|.|+.|..+|+.|...|.. ++..|.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~-v~~~D~ 37 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIP-FAVMDS 37 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCe-EEEEeC
Confidence 356799999999999999999999985 888885
No 274
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.37 E-value=0.29 Score=48.90 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=75.4
Q ss_pred HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHHH-----hCC------CcEEEE
Q 020565 11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL-----AGV------GSLTLM 61 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~~-----~Gv------~~i~lv 61 (324)
++||..++..|..+-| ++|++.+|+++|+|+.|.-+++.|+. .|+ ++|.++
T Consensus 283 L~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~v 362 (581)
T PLN03129 283 LQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLV 362 (581)
T ss_pred HHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEE
Confidence 4667656666644322 68899999999999999999999998 477 689999
Q ss_pred cCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCC--ccEEEEcCC--CHHHH
Q 020565 62 DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDK--FDVVVVSCC--SVTTK 137 (324)
Q Consensus 62 D~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~--~diVi~~~~--~~~~~ 137 (324)
|.+-+-..+-. +++ ...|..-+.. ..+ . ....+.++. .|++|-++. +.-+.
T Consensus 363 D~~GLi~~~r~-------~~l---~~~k~~fa~~----~~~----------~-~~L~e~v~~vkptvLIG~S~~~g~Ft~ 417 (581)
T PLN03129 363 DSKGLVTKSRK-------DSL---QPFKKPFAHD----HEP----------G-ASLLEAVKAIKPTVLIGLSGVGGTFTK 417 (581)
T ss_pred cCCCeEeCCCC-------ccC---hHHHHHHHhh----ccc----------C-CCHHHHHhccCCCEEEEecCCCCCCCH
Confidence 98643322211 112 2333333222 111 0 123445555 688877664 33345
Q ss_pred HHHHHHHHhccCCccEEEeeecCc
Q 020565 138 KLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 138 ~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
..|...+.. ...|+|.+-+...
T Consensus 418 evi~~Ma~~--~~rPIIFaLSNPt 439 (581)
T PLN03129 418 EVLEAMASL--NERPIIFALSNPT 439 (581)
T ss_pred HHHHHHHhc--CCCCEEEECCCCC
Confidence 566666655 5668877765543
No 275
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.37 E-value=0.82 Score=41.69 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.1
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~ 63 (324)
+|+|.|. |.+|..+++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899996 8899999999999883 35777654
No 276
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.33 E-value=0.59 Score=45.33 Aligned_cols=40 Identities=10% Similarity=-0.061 Sum_probs=32.6
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~ 72 (324)
.+|.|||+|-+|..+|.+|+..|.. ++.+|.+.-..+.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~-V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQ-VIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCE-EEEEeCCHHHHHHHH
Confidence 6799999999999999999999964 888887554444443
No 277
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.29 E-value=0.67 Score=43.65 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=19.3
Q ss_pred CcEEEEcCchhHHHHHHHHHH
Q 020565 32 SHILVCGMKGTVAEFCKNIVL 52 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~ 52 (324)
-+|.|+|+|.+|+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 479999999999999999877
No 278
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.25 E-value=0.16 Score=47.09 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=29.0
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|-.|+-+|..++.+|+. +++.|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence 5799999999999999999997776 9999885
No 279
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.24 E-value=0.44 Score=43.65 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=26.9
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+|+|+|+|.+|..++..|.+.|.. ..+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~ 34 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGR 34 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCe-EEEEee
Confidence 46899999999999999999999987 444443
No 280
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.19 E-value=0.22 Score=46.65 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=64.8
Q ss_pred HhHHHHHh--hhHHH------HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565 13 LYDRQIRV--WGADA------QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY 84 (324)
Q Consensus 13 ry~Rqi~l--~g~~~------q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~ 84 (324)
+++|+.|- |...+ ...++.+++.|+|.|.+|..+|+.+..-|. ++...|...- +
T Consensus 120 ~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~---------------- 181 (324)
T COG1052 120 EGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-P---------------- 181 (324)
T ss_pred HHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-h----------------
Confidence 45555555 44432 246889999999999999999999994443 3555554221 0
Q ss_pred CCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHHH-hccCCccEEEee
Q 020565 85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCR-KLSKRVAFYTVD 157 (324)
Q Consensus 85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~-~~~~~ip~i~~~ 157 (324)
..+ ++.+ .... + .++.+++.|+|+... .+.+++..||+.-. +++.+.-+|+++
T Consensus 182 ----~~~------~~~~----~~y~-----~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 182 ----EAE------KELG----ARYV-----D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred ----HHH------hhcC----ceec-----c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 000 0000 1111 1 467788899886554 67888888887543 333555566655
No 281
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.14 E-value=0.12 Score=45.57 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=34.8
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
..|+..+|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 357889999999999999999999999998888888743
No 282
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.35 Score=42.56 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence 56789999996 89999999999999975 666544
No 283
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.10 E-value=0.11 Score=48.77 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.|.+++|+|||+|-+|..++++|...|++++++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999999999999754
No 284
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.09 E-value=0.25 Score=48.15 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=52.0
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHh-------CCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLA-------GVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~-------Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln 101 (324)
-.+|.|||+ |.+|+.++..|+.. |+. ++.++|. .+.|++..+--|+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~----------------------~~~~a~G~amDL~daa 157 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER----------------------SKQALEGVAMELEDSL 157 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC----------------------CcchhHHHHHHHHHhh
Confidence 358999999 99999999999988 553 4666554 4556666666666654
Q ss_pred -CCC-eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565 102 -PMV-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 102 -p~v-~v~~~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
|.. ++.... ...+.++++|+||.+...
T Consensus 158 ~~~~~~v~i~~-----~~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 158 YPLLREVSIGI-----DPYEVFQDAEWALLIGAK 186 (444)
T ss_pred hhhcCceEEec-----CCHHHhCcCCEEEECCCC
Confidence 432 222211 235678999999988764
No 285
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.27 Score=43.77 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence 56789999997 78999999999999985 766654
No 286
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.33 Score=43.06 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+.+++|+|.|. |++|..+++.|+..|.. +++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 56789999996 88999999999999984 777655
No 287
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.08 E-value=0.22 Score=45.70 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=63.9
Q ss_pred EEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC--C
Q 020565 36 VCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD--L 113 (324)
Q Consensus 36 iiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~--~ 113 (324)
+||+|.+|..++++|+..|. +++++|.+.-..+.+.. . |...+....+.++ +.++-+...... +
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~---g~~~~~s~~~~~~--~advVil~vp~~~~~ 66 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------A---GAQAAASPAEAAE--GADRVITMLPAGQHV 66 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------c---CCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence 58999999999999999997 58898875433222211 1 2222222222222 223333333221 1
Q ss_pred CCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565 114 SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (324)
Q Consensus 114 ~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~ 161 (324)
... ....+..-.+||+++ -++.+...+.+.+.+ +++.|+++-..|.
T Consensus 67 ~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~--~g~~~vdaPv~Gg 119 (288)
T TIGR01692 67 ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAA--HGAVFMDAPVSGG 119 (288)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEECCCCCC
Confidence 110 111233345666665 467777889999988 8999998876653
No 288
>PLN00016 RNA-binding protein; Provisional
Probab=93.02 E-value=0.34 Score=46.17 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHHhcCcEEEE----cC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565 26 QRRLSKSHILVC----GM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF 100 (324)
Q Consensus 26 q~~l~~~~Vlii----G~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l 100 (324)
-......+|+|+ |+ |-+|+.+++.|...|. ++++++.+.-....+.. .. . ..+.++
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~-----~~-~------------~~~~~l 107 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK-----EP-F------------SRFSEL 107 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc-----Cc-h------------hhhhHh
Confidence 345566789999 75 7799999999999996 47877764321110000 00 0 001111
Q ss_pred CCCCeEeEeeCCCCCCchhhc--CCccEEEEcCC-CHHHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565 101 NPMVRVSVEKGDLSSLDGEFY--DKFDVVVVSCC-SVTTKKLINEKCRKLSKRV-AFYTVDCRDSCG 163 (324)
Q Consensus 101 np~v~v~~~~~~~~~~~~~~~--~~~diVi~~~~-~~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g 163 (324)
... .++....++.+ ....+ .++|+||.+.. .......+-+.|++ .++ .||..++.|.+|
T Consensus 108 ~~~-~v~~v~~D~~d-~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~--~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 108 SSA-GVKTVWGDPAD-VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKS--PGLKQFLFCSSAGVYK 170 (378)
T ss_pred hhc-CceEEEecHHH-HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEEccHhhcC
Confidence 110 12233333322 12222 46899998864 34445567788888 676 588888887766
No 289
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.01 E-value=0.5 Score=38.84 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=43.4
Q ss_pred CcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 32 ~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
++|+|.| .+|+|.++++.|+..|-.++.+++.. . ...+.+.+.+.+++.+ .++....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~~--~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAPG--AKITFIE 58 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHTT--SEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----cccccccccccccccc--ccccccc
Confidence 3689999 57999999999999998888887663 0 2345666666777555 5565555
Q ss_pred CCCC
Q 020565 111 GDLS 114 (324)
Q Consensus 111 ~~~~ 114 (324)
.++.
T Consensus 59 ~D~~ 62 (167)
T PF00106_consen 59 CDLS 62 (167)
T ss_dssp SETT
T ss_pred cccc
Confidence 4443
No 290
>PRK06046 alanine dehydrogenase; Validated
Probab=92.98 E-value=0.44 Score=44.65 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=53.4
Q ss_pred cCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
..+|.|+|+|..|...+.+|. ..++..+.++|. ...+++.+++.+++..+ +.+...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~~ 185 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTVA 185 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence 478999999999999999998 458888888877 55577777777765433 333332
Q ss_pred eCCCCCCchhhcCCccEEEEcCCC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
. ..++.++ .|+|+.|+-+
T Consensus 186 ~-----~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 186 E-----DIEEACD-CDILVTTTPS 203 (326)
T ss_pred C-----CHHHHhh-CCEEEEecCC
Confidence 2 2244555 8999999865
No 291
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.97 E-value=0.3 Score=44.82 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+++.+|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3456788999996 8999999999999997 4777654
No 292
>PLN02256 arogenate dehydrogenase
Probab=92.95 E-value=0.28 Score=45.51 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=30.4
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+.+..+|.|||+|.+|..+++.|...|. .++.+|.
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 34566789999999999999999999985 5777776
No 293
>PRK12862 malic enzyme; Reviewed
Probab=92.90 E-value=0.24 Score=51.57 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=36.3
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVV 66 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v 66 (324)
++|++.||++.|+|+.|..+++.|...|+. +|.++|..-+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 678999999999999999999999999995 8999997543
No 294
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.85 E-value=0.23 Score=49.71 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..|..++|.|+|+|.+|..+|+.|...|.. +..+|.
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~ 171 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMK-VIAYDP 171 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECC
Confidence 358999999999999999999999999984 777776
No 295
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.85 E-value=0.71 Score=48.01 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=29.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++|.|||+|..|+.||..++.+|.. ++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCC
Confidence 4799999999999999999999986 9999974
No 296
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.25 Score=43.80 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAK-VVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence 56789999996 78999999999999964 777665
No 297
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.84 E-value=0.2 Score=46.94 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=56.9
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
.|..++|.|||+|.+|.++++.|. ..|+. +...|... . .+. ..+.+ +
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~~~-~------------~~~--------------~~~~~--~-- 189 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNARRH-H------------KEA--------------EERFN--A-- 189 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECCCC-c------------hhh--------------HHhcC--c--
Confidence 689999999999999999999987 55654 55555410 0 000 00000 1
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~ 157 (324)
+. ...+++++.+|+|+.+. .+.+++..+++.- .+++.+--||+++
T Consensus 190 ~~------~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 190 RY------CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred Ee------cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 11 01356788899987765 5777887777643 3333555566665
No 298
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.81 E-value=0.32 Score=47.42 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.1
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~ 67 (324)
+.+.+|+|+|+|..|..+++.|.+.|. .+++.|.....
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence 448899999999999999999999995 49999985554
No 299
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.79 E-value=0.91 Score=42.67 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=26.4
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+.+|+|.|. |.+|+.+++.|+..|.. +++++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 3568999995 78999999999999975 555544
No 300
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.74 E-value=0.77 Score=44.83 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=60.9
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
+..+|+|.|. |-+|+.+++.|...|.. ++.+|.... +. +... ..+.. ++ .++.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~-V~~ldr~~~-------------------~~-~~~~--~~~~~-~~--~~~~ 172 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE-VIVIDNFFT-------------------GR-KENL--VHLFG-NP--RFEL 172 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCCC-------------------cc-HhHh--hhhcc-CC--ceEE
Confidence 4468999996 67999999999999974 777775321 10 0000 00000 12 2333
Q ss_pred eeCCCCCCchhhcCCccEEEEcCC---------CHH--------HHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCC---------SVT--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~---------~~~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g~ 164 (324)
...++. +..+.++|+||-+.. ++. .-..+-+.|++ .++.||.+++...||.
T Consensus 173 ~~~Di~---~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~--~g~r~V~~SS~~VYg~ 240 (436)
T PLN02166 173 IRHDVV---EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGARFLLTSTSEVYGD 240 (436)
T ss_pred EECccc---cccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHH--hCCEEEEECcHHHhCC
Confidence 333332 223457888886552 111 12345578888 6778999888777763
No 301
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.71 E-value=0.35 Score=42.68 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++++|.|+ |++|..+++.|+..|.. +.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 46788999995 78999999999999974 777665
No 302
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.70 E-value=0.3 Score=45.95 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=28.6
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~ 63 (324)
..|..++|.|||+|.+|..+++.|+. .|+ ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~ 178 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDP 178 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 35899999999999999999999953 454 3555554
No 303
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.18 Score=45.33 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..++++++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r 41 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR 41 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 34578899999997 79999999999999975 777765
No 304
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.65 E-value=0.63 Score=45.70 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.2
Q ss_pred hcCcEEEEcCchhHHH-HHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGse-i~k~L~~~Gv~~i~lvD~ 63 (324)
+..+|+|+|+|+.|.. +|+.|...|.. ++..|.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~ 39 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL 39 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence 4578999999999999 79999999987 788776
No 305
>PRK09186 flagellin modification protein A; Provisional
Probab=92.63 E-value=0.4 Score=42.48 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=28.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r 36 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADI 36 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEec
Confidence 45788999996 78999999999999975 666643
No 306
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.60 E-value=0.31 Score=48.53 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=29.1
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++|.|||+|..|+.+|.+|+.+|+. ++++|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence 5799999999999999999999986 8898874
No 307
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.60 E-value=1 Score=41.74 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.3
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|+|.|+ |.+|..+++.|+..|.. ++++|.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~~ 32 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHD-VVILDN 32 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCe-EEEEec
Confidence 6999995 89999999999999975 666653
No 308
>PRK06436 glycerate dehydrogenase; Provisional
Probab=92.57 E-value=0.1 Score=48.45 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=34.8
Q ss_pred hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 21 ~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
|.......|..++|.|+|+|.+|.++++.|...|.. +..+|..
T Consensus 112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~ 154 (303)
T PRK06436 112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRS 154 (303)
T ss_pred CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence 543333579999999999999999999988888884 7888863
No 309
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=92.56 E-value=0.89 Score=42.17 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=30.5
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcccccc
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEA 70 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~n 70 (324)
+|.|||+||-|+.++..|.+.|+. .+..+|.|.-..+.
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~ 41 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAK 41 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhc
Confidence 689999999999999999999986 34567776644333
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.54 E-value=0.68 Score=43.61 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=29.0
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 578999999999999999888999987877765
No 311
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.51 E-value=0.38 Score=42.89 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++++++++|.|+ |++|..+++.|+..|.. +++++.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence 467899999995 88999999999999984 777765
No 312
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.45 Score=42.42 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=26.6
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46999997 8899999999999996 5777765
No 313
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.46 E-value=0.41 Score=42.64 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 367889999997 78999999999999986 666655
No 314
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.44 E-value=0.44 Score=44.65 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 467789999997 78999999999999975 777665
No 315
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.41 E-value=0.77 Score=43.15 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.++.++|+|.|. |=+|+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456689999996 7799999999999996 47777753
No 316
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.40 E-value=0.72 Score=44.21 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHh---cCcEEEEcCchhHHHHHHHHHHh--CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565 26 QRRLS---KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF 100 (324)
Q Consensus 26 q~~l~---~~~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l 100 (324)
-+.|. .+++.|+|+|.-+-.-++.++.. ++.++.++|. ...|++..++++++.
T Consensus 147 a~~LAr~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~ 204 (379)
T PRK06199 147 ARHLARKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAET 204 (379)
T ss_pred HHHhccCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHh
Confidence 34554 47899999999999999988763 4889999876 666888999999887
Q ss_pred CCCC-eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565 101 NPMV-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 101 np~v-~v~~~~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
.+.+ .+... +..++.+.++|+|+.|+.+
T Consensus 205 ~~~~~~v~~~-----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 205 YPQITNVEVV-----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred cCCCceEEEe-----CCHHHHHcCCCEEEEccCC
Confidence 6644 35443 2346678899999988864
No 317
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.37 E-value=0.52 Score=36.70 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=20.2
Q ss_pred cEEEEcCchhHHHHHHHHHHhC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAG 54 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~G 54 (324)
||.|||+|..|..-+..+...+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~ 23 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS 23 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT
T ss_pred EEEEECCcHHHHHHHHHHHhcC
Confidence 6899999999999999999883
No 318
>PLN02928 oxidoreductase family protein
Probab=92.36 E-value=0.13 Score=48.61 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=62.1
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..|..++|.|+|+|.+|.++|+.|...|. +++.+|...-.... . .. |. + .+.+..
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~--~-------~~---~~-~-----------~~~~~~ 209 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE--D-------GL---LI-P-----------NGDVDD 209 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh--h-------hh---cc-c-----------cccccc
Confidence 35889999999999999999999999998 58888762100000 0 00 00 0 000000
Q ss_pred eEe-eCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565 107 SVE-KGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~-~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~ 157 (324)
-.. .... ...+++++.+|+|+.+. .+.+++..+++.. ..++.+.-+|+++
T Consensus 210 ~~~~~~~~-~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 210 LVDEKGGH-EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccccCcc-cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 000 0011 23467889999998887 4677777777532 3333555566655
No 319
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.36 E-value=2.4 Score=36.51 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=51.9
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhC-CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~G-v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
....+|+-+|||+ |.-.+..+.+.| -++++-+|. .....+.+++++++.+-.-++.
T Consensus 39 ~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~----------------------~~~~~~~a~~n~~~~g~~~~v~ 95 (198)
T PRK00377 39 RKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDK----------------------DEKAINLTRRNAEKFGVLNNIV 95 (198)
T ss_pred CCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEEC----------------------CHHHHHHHHHHHHHhCCCCCeE
Confidence 3557899999986 655554443444 357888876 3445566666666654112334
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
....+..+.....-..+|.|+...........+...++.
T Consensus 96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~ 134 (198)
T PRK00377 96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEI 134 (198)
T ss_pred EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHH
Confidence 333333221112124799999865433334445555544
No 320
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=92.35 E-value=0.71 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=28.6
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|..++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 35678999996 7899999999999997 5777765
No 321
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=92.34 E-value=0.92 Score=44.16 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=71.4
Q ss_pred cEEEEcCchhH-HHHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 33 HILVCGMKGTV-AEFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 33 ~VliiG~g~lG-sei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
||.|||.||.= -++++.|+. ..+++|.|+|-|.-..+. -...+.+..++..+.++++
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~------------------v~~l~~~~~~~~g~~~~v~ 63 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDI------------------ILTIAKRYVEEVGADIKFE 63 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH------------------HHHHHHHHHHhhCCCeEEE
Confidence 79999999853 377777773 446899999874221110 1234445556677777776
Q ss_pred EeeCCCCCCchhhcCCccEEEEcC--CCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSC--CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~--~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
.... ..+-++++|+||.+. ...+.+..=-+++.+ +|+ +-..+.|-.|.++
T Consensus 64 ~ttD-----~~~Al~gADfVi~~irvGg~~~r~~De~Iplk--~G~--~gqeT~G~GG~~~ 115 (425)
T cd05197 64 KTMD-----LEDAIIDADFVINQFRVGGLTYREKDEQIPLK--YGV--IGQETVGPGGTFS 115 (425)
T ss_pred EeCC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHHHH--cCc--ccccccCcchhhh
Confidence 6532 367789999999886 455666655567877 765 4477888778554
No 322
>PRK12861 malic enzyme; Reviewed
Probab=92.34 E-value=0.33 Score=50.38 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=36.4
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVV 66 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v 66 (324)
++|++.||++.|+|+.|..+++.|...|+. +|.++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 688999999999999999999999999996 8999997543
No 323
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.30 E-value=0.19 Score=46.02 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=69.3
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|.+||+|..|..+++||..+|.. ++++|.+.-....+-+. - |-.-+...++...+. ++-+.....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r~~~ka~~~~~~-------~---Ga~~a~s~~eaa~~a--DvVitmv~~ 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNRTPEKAAELLAA-------A---GATVAASPAEAAAEA--DVVITMLPD 67 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeCChhhhhHHHHH-------c---CCcccCCHHHHHHhC--CEEEEecCC
Confidence 4799999999999999999999965 88887754331111110 0 222222222222221 222322222
Q ss_pred C--CCCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565 112 D--LSSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (324)
Q Consensus 112 ~--~~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~ 162 (324)
. +.+. ..+.+++=.++|+++ -++...+.+.+...+ ++..|+++-+.|..
T Consensus 68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~--~G~~~lDAPVsGg~ 125 (286)
T COG2084 68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA--KGLEFLDAPVSGGV 125 (286)
T ss_pred HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCcEEecCccCCc
Confidence 1 1110 011223456777665 578888999999999 99999999998843
No 324
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.29 E-value=0.77 Score=42.01 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565 23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (324)
Q Consensus 23 ~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln 101 (324)
.....++.++.|+|-|+ .|+|-++|+.|+..|.+-+.++ . -..+-+.+++.+++.-
T Consensus 4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva-r----------------------~~rrl~~v~~~l~~~~ 60 (282)
T KOG1205|consen 4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA-R----------------------RARRLERVAEELRKLG 60 (282)
T ss_pred cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee-h----------------------hhhhHHHHHHHHHHhC
Confidence 34568899999999998 5899999999999999844332 2 2335566666666665
Q ss_pred CCCeEeEeeCCCCC
Q 020565 102 PMVRVSVEKGDLSS 115 (324)
Q Consensus 102 p~v~v~~~~~~~~~ 115 (324)
|.-++.+...++++
T Consensus 61 ~~~~v~~~~~Dvs~ 74 (282)
T KOG1205|consen 61 SLEKVLVLQLDVSD 74 (282)
T ss_pred CcCccEEEeCccCC
Confidence 54356666666553
No 325
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=92.24 E-value=0.49 Score=46.18 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=69.4
Q ss_pred cEEEEcCchhHH-HHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 33 ~VliiG~g~lGs-ei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
||.|||.||.=+ ++++-|+. .++++|+|+|-|.-.. .. -...+.+..++.++.++++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl---~~---------------v~~l~~~~~~~~g~~~~v~ 63 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQ---EK---------------VAEAVKILFKENYPEIKFV 63 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHH---HH---------------HHHHHHHHHHhhCCCeEEE
Confidence 799999998644 66777764 4568999998743111 10 1123334445556666666
Q ss_pred EeeCCCCCCchhhcCCccEEEEcC--CCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSC--CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~--~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
... ...+-++++|+||.+. ...+.+..=-+++.+ +|+ +...+.|.-|.++
T Consensus 64 ~Tt-----dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~k--yGi--~gqET~G~GG~~~ 115 (437)
T cd05298 64 YTT-----DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLK--HGV--VGQETCGPGGFAY 115 (437)
T ss_pred EEC-----CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHH--cCc--ceecCccHHHHHH
Confidence 643 2367789999999886 355666666678888 886 5557777777443
No 326
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.21 E-value=0.45 Score=42.17 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67789999996 7899999999999997 5888776
No 327
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=92.20 E-value=0.66 Score=43.44 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=52.5
Q ss_pred cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
..++.|||+|..|..-++.|.. ..+.++.++|. ...|++..++++++..+ ++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~g~--~v~~~ 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDYEV--PVRAA 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhhCC--cEEEe
Confidence 4789999999999987777654 34566777655 66678888888876532 33332
Q ss_pred eCCCCCCchhhcCCccEEEEcCCC
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCS 133 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~ 133 (324)
....+.+++.|+|+.|+.+
T Consensus 184 -----~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 -----TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred -----CCHHHHhccCCEEEEecCC
Confidence 2345667899999998865
No 328
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.19 E-value=0.16 Score=47.54 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=28.1
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~ 63 (324)
||.|+|+ |.+|+.++..|+..|+- .+.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 99999999999998886 4999986
No 329
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.13 E-value=0.41 Score=42.03 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.9
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE-cC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM-DD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv-D~ 63 (324)
|++++++|+|. |++|.++++.|+..|.. +.++ +.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r 38 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDI 38 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 56789999996 89999999999999986 5544 54
No 330
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=92.11 E-value=1 Score=41.26 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=58.3
Q ss_pred cEEEEcCc-hhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 33 HILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~g-~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
+|||.|.+ -+|.++++.|. +-..++-.|...+ .-.-.+.+.+.+++..|++-|+.-..
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-------------------Ditd~~~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAEL-------------------DITDPDAVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccc-------------------cccChHHHHHHHHhhCCCEEEECccc
Confidence 49999975 59999999998 4344555555332 22334567888999999987765321
Q ss_pred CCCCCchhhcCCccEEEEcCCCHH--------HHHHHHHHHHhccCCccEEEeee
Q 020565 112 DLSSLDGEFYDKFDVVVVSCCSVT--------TKKLINEKCRKLSKRVAFYTVDC 158 (324)
Q Consensus 112 ~~~~~~~~~~~~~diVi~~~~~~~--------~~~~l~~~~~~~~~~ip~i~~~~ 158 (324)
.-|-.|...++ ....+.++|++ .+.++|+.++
T Consensus 61 -------------t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~--~ga~lVhiST 100 (281)
T COG1091 61 -------------TAVDKAESEPELAFAVNATGAENLARAAAE--VGARLVHIST 100 (281)
T ss_pred -------------cccccccCCHHHHHHhHHHHHHHHHHHHHH--hCCeEEEeec
Confidence 11222222323 23456689999 8999998874
No 331
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.10 E-value=0.23 Score=47.65 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=35.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSAN 74 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~ 74 (324)
...|+|||.|-+|+.+|..|++. |..+++|+|.+.+.....+++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 44699999999999999999985 877799999987654443333
No 332
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.09 E-value=0.37 Score=42.86 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++..+++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeC
Confidence 356788999997 88999999999999985 777665
No 333
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.08 E-value=0.38 Score=42.76 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++|+|.|. |++|..+++.|+..|.. +.+.|.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r 42 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGR 42 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeC
Confidence 67789999996 88999999999999974 777665
No 334
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.8 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecC
Confidence 56789999997 78999999999999964 777654
No 335
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.96 E-value=0.41 Score=42.07 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+++.+++|.|. |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r 39 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLAR 39 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999995 6899999999999998 6888765
No 336
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.93 E-value=0.51 Score=41.77 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++|+|.|. |++|.++++.|+..|.. +.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAK-VVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 45678999995 89999999999999974 677655
No 337
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.92 E-value=1 Score=42.30 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=28.9
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+|+|+|+|++|..++..+...|. +++.++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 56899999999999999999999998 4777765
No 338
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.92 E-value=0.99 Score=43.33 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=27.1
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+..+|+|.|. |.+|+.+++.|...|.. +++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence 4568999996 88999999999999974 666654
No 339
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.91 E-value=0.4 Score=44.45 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=31.4
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..++|||+|+|++|--....+-..|..++.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 4688999999999999999999999999999886
No 340
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.89 E-value=0.86 Score=48.60 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.7
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~ 67 (324)
-...+|+|||.|+.|-++|..|++.|.. ++++|...++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~ 418 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKIT 418 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccc
Confidence 3677999999999999999999999987 9999986554
No 341
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.86 E-value=0.8 Score=45.41 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.3
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+++|+|+|+|..|..+++.|...|. ++++.|.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~ 43 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD 43 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 56799999999999999999999996 5888875
No 342
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.83 E-value=0.74 Score=41.36 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 56788999997 68999999999999975 777765
No 343
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.77 E-value=0.95 Score=45.70 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=30.8
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
...+|+|||+|..|...|..|.+.|.. ++++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 567899999999999999999999985 9999864
No 344
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.74 E-value=3.1 Score=37.25 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=25.9
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
...+|+-+|||+ |. ++..+++.|.++++-+|.+
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis 151 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDID 151 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECC
Confidence 678999999997 74 4556778888888888873
No 345
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.73 E-value=1.1 Score=46.49 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=29.0
Q ss_pred CcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d 64 (324)
++|.|||+|..|+.+|..++ .+|+. ++++|.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~ 342 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDIN 342 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCC
Confidence 57999999999999999999 88986 9999874
No 346
>PLN02858 fructose-bisphosphate aldolase
Probab=91.67 E-value=1.1 Score=49.88 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=69.3
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
..+|.+||+|.+|..++.||++.|.. ++++|...-..+.+.. . |-..+....+..+. .++-+....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~--------~---Ga~~~~s~~e~a~~--advVi~~l~ 69 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFK-VQAFEISTPLMEKFCE--------L---GGHRCDSPAEAAKD--AAALVVVLS 69 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHH--------c---CCeecCCHHHHHhc--CCEEEEEcC
Confidence 46799999999999999999999975 8888764322222211 1 32223222222221 222222222
Q ss_pred CC--CCCC---ch---hhcCCccEEEEcC-CCHHHHHHHHHHHHhccCC--ccEEEeeecCc
Q 020565 111 GD--LSSL---DG---EFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKR--VAFYTVDCRDS 161 (324)
Q Consensus 111 ~~--~~~~---~~---~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~--ip~i~~~~~G~ 161 (324)
.. ..+. .. ..+..-.+||+++ -++.+...+.+.+.+ ++ +.|+++.+.|.
T Consensus 70 ~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~--~g~~~~~lDaPVsGg 129 (1378)
T PLN02858 70 HPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE--RKEQIFLVDAYVSKG 129 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh--cCCceEEEEccCcCC
Confidence 11 0110 01 1123345777665 578888899999988 78 88999988875
No 347
>PLN02214 cinnamoyl-CoA reductase
Probab=91.58 E-value=1.9 Score=40.38 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=27.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD 62 (324)
++.++|+|.|+ |.+|+.+++.|...|.. ++.++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence 45678999997 88999999999999974 55544
No 348
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.55 E-value=0.63 Score=41.67 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++.+++|.|. |++|..+++.|+..|. ++.+++.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r 42 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAAR 42 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999996 5799999999999998 6877765
No 349
>PRK12746 short chain dehydrogenase; Provisional
Probab=91.55 E-value=0.34 Score=42.97 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL 60 (324)
Q Consensus 27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l 60 (324)
+++++++++|.|+ |++|+++++.|+..|.. +.+
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i 35 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL-VAI 35 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence 3467789999995 78999999999999975 444
No 350
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.54 E-value=0.68 Score=43.04 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=29.3
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~-~i~lvD~d 64 (324)
.+|.|+|+ |.+|+.++..|+..|+. +++++|..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 37999998 99999999999999975 69999983
No 351
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.54 Score=41.30 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM 61 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv 61 (324)
+++++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence 46788999996 89999999999999985 4444
No 352
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.44 E-value=1.6 Score=38.88 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM 61 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv 61 (324)
.....+|+|+|+ |.+|..+++.|+..|.. ++.+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 345678999996 88999999999999865 5443
No 353
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.41 E-value=1.3 Score=39.38 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.0
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r 34 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADI 34 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 457999996 6899999999999997 4778775
No 354
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.41 E-value=0.47 Score=41.52 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL 60 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l 60 (324)
++.++|+|.|+ |++|.++++.|+..|.. +++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~ 35 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGAD-VVV 35 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence 45678999995 88999999999999986 444
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.41 E-value=1.1 Score=46.22 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=40.9
Q ss_pred CCCHHHHHHhHHHHHh---hhHH-HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 5 ELTEQETALYDRQIRV---WGAD-AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l---~g~~-~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+++--.++||--.... |... .+..-...+|+|||.|..|-..|..|++.|.. ++++|..
T Consensus 297 ~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 297 AVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 4555566777533322 2110 01113567999999999999999999999986 9999874
No 356
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.39 E-value=0.23 Score=47.49 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.|..++|.|||+|.+|+.+++.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58999999999999999999999999986 777886
No 357
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.36 E-value=1.1 Score=39.81 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.7
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999997 6899999999999998 6888765
No 358
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.35 E-value=1.1 Score=42.10 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=53.5
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
..+|+|+|+||+|.-.++....+| .+++.+|. +..|.+.+++ +--+.-+...+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~~----lGAd~~i~~~~ 219 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAKK----LGADHVINSSD 219 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHHH----hCCcEEEEcCC
Confidence 578999999999999999999999 67888776 5556554433 32222222211
Q ss_pred CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
.+. ....-+.+|+||++.. ..+....-+.++.
T Consensus 220 ~~~---~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~ 251 (339)
T COG1064 220 SDA---LEAVKEIADAIIDTVG-PATLEPSLKALRR 251 (339)
T ss_pred chh---hHHhHhhCcEEEECCC-hhhHHHHHHHHhc
Confidence 111 1111123999999988 5544444455555
No 359
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.34 E-value=1.5 Score=42.96 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=41.3
Q ss_pred CCCCHHHHHHhHHHHHh-hhHHH---HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 4 EELTEQETALYDRQIRV-WGADA---QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l-~g~~~---q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+++--.++||....-. .|... -..-+..+|+|||.|..|.+.|..|++.|.. ++++|..
T Consensus 102 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~ 165 (449)
T TIGR01316 102 KPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL 165 (449)
T ss_pred CCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 45666667777543211 12110 0123467899999999999999999999985 9999974
No 360
>PRK06194 hypothetical protein; Provisional
Probab=91.32 E-value=0.58 Score=42.36 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++.+|+|.|. |++|.++++.|+..|.. ++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMK-LVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeC
Confidence 45678999995 78999999999999974 888765
No 361
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.66 Score=40.91 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++++|.|. |++|..+++.|+..|.. +.++|.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r 38 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADI 38 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 56788999997 89999999999999964 777765
No 362
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.30 E-value=1.3 Score=38.95 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.5
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++|+|.|+ |++|..+++.|+..|.. ++++|.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r 33 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGAR-LYLAAR 33 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeC
Confidence 47899995 89999999999999974 777766
No 363
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.27 E-value=0.43 Score=44.27 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.1
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+..++|+|.|. |++|.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 35678999996 7899999999999995 4777764
No 364
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.88 Score=40.42 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+++.+++|.|+ |++|..+++.|+..|.. +++++.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 34578899999996 78999999999999986 777764
No 365
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.25 E-value=1.9 Score=39.86 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=25.1
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|+|.|+ |-+|+.+++.|...|.. ++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCe-EEEEEc
Confidence 6999996 77999999999999964 666544
No 366
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.21 E-value=0.93 Score=48.64 Aligned_cols=95 Identities=12% Similarity=0.023 Sum_probs=55.1
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
..++|+|||+|..|...|..|++.|.. +|++|.. +.++...-+.-.+. ...+.-.+.-.+.++++. +++...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~----~~~GG~l~yGIP~~-rlp~~vi~~~i~~l~~~G--v~f~~n 376 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF----HDLGGVLRYGIPEF-RLPNQLIDDVVEKIKLLG--GRFVKN 376 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC----CCCCceEEccCCCC-cChHHHHHHHHHHHHhhc--CeEEEe
Confidence 478999999999999999999999985 9999863 23333322221111 002222223333444443 443321
Q ss_pred eCCCC-C-CchhhcC-CccEEEEcCCC
Q 020565 110 KGDLS-S-LDGEFYD-KFDVVVVSCCS 133 (324)
Q Consensus 110 ~~~~~-~-~~~~~~~-~~diVi~~~~~ 133 (324)
.. +. . ..+++.+ +||.||.++..
T Consensus 377 ~~-vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 377 FV-VGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EE-eccEEeHHHhccccCCEEEEeCCC
Confidence 11 11 1 1233343 69999998875
No 367
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.16 E-value=1.2 Score=46.48 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=29.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|..|+.||..++.+|+. ++++|.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCc-EEEecCC
Confidence 4699999999999999999999986 9999875
No 368
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=91.11 E-value=0.66 Score=48.18 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=35.9
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV 65 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~ 65 (324)
++|.+.||++.|+|+.|..+++.|...|+. +|.++|..-
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 688999999999999999999999999995 899999854
No 369
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.08 E-value=2.9 Score=38.58 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=25.5
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD 62 (324)
+++|+|.|. |.+|+.+++.|+..|.. +++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence 468999995 88999999999999975 55543
No 370
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.07 E-value=0.66 Score=42.04 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.9
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++.++|.|+||+|.++++.|+ .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 467899999999999999996 785 5777765
No 371
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=91.02 E-value=2 Score=38.88 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
...+|+.+|||+ |..+.......|.. +++-+|. ...+.+.+.++....... +++.
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~----------------------s~~~l~~A~~~~~~~g~~-~v~~ 132 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM----------------------TPEMLAKARANARKAGYT-NVEF 132 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC----------------------CHHHHHHHHHHHHHcCCC-CEEE
Confidence 567999999997 87665555555653 6888876 333455555555544321 3444
Q ss_pred eeCCCCCCchhhcCCccEEEEcC
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSC 131 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~ 131 (324)
...++.+.... -..||+|+...
T Consensus 133 ~~~d~~~l~~~-~~~fD~Vi~~~ 154 (272)
T PRK11873 133 RLGEIEALPVA-DNSVDVIISNC 154 (272)
T ss_pred EEcchhhCCCC-CCceeEEEEcC
Confidence 44444322100 13689998654
No 372
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.02 E-value=0.56 Score=41.36 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.1
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG 56 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~ 56 (324)
|...+++|.|. |++|.++++.|+..|..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~ 30 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD 30 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 34578999996 78999999999999976
No 373
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.02 E-value=1.2 Score=40.01 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=27.1
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++.+++|.|+ |++|..+++.|+..|.. +++++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r 35 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMR 35 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeC
Confidence 4567899995 78999999999999975 666655
No 374
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.01 E-value=0.98 Score=44.79 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=30.2
Q ss_pred hcCcEEEEcCchhHHHHHHHHHH--hCCCcEEEEcCCc
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVL--AGVGSLTLMDDRV 65 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~--~Gv~~i~lvD~d~ 65 (324)
...+|+|||.|.-|.+.|..|+. .|. +++|+|...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 45789999999999999999997 576 599999754
No 375
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.00 E-value=1.2 Score=40.46 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=21.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~ 63 (324)
..+||++|+|+ |. +++.++.. ++.+++++|-
T Consensus 73 p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~vei 104 (270)
T TIGR00417 73 PKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDI 104 (270)
T ss_pred CCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeC
Confidence 45999999985 44 33444444 4788999877
No 376
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.00 E-value=0.72 Score=41.57 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+++++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAK-VAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 367788999996 78999999999999984 877765
No 377
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.97 E-value=1.2 Score=41.82 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=27.4
Q ss_pred cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~ 63 (324)
..+|+|+|+|++|..++..+.+ .|..+++.+|.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~ 197 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK 197 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 5789999999999998888875 57667888775
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.95 E-value=1.3 Score=41.96 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=28.7
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+|+|.|+|++|..++..+...|..++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 468999999999999999888999977877765
No 379
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.89 E-value=0.69 Score=41.11 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+++++|+|.|+ |++|..+++.|+..|..++.+++.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 367889999996 7899999999999998778887763
No 380
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.87 E-value=1.5 Score=40.69 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=29.6
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+|+|.|+|++|..++..+...|.++++.+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3679999999999999999999999986777765
No 381
>PLN02366 spermidine synthase
Probab=90.83 E-value=1.2 Score=41.36 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=32.1
Q ss_pred CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCC
Q 020565 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR 64 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d 64 (324)
+|+.+.-.|.+-+--...... =...+||+||+|+ |. ++..+++ .++.+++++|-|
T Consensus 69 ~~~~de~~Y~e~l~h~~l~~~--~~pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD 124 (308)
T PLN02366 69 LTERDECAYQEMITHLPLCSI--PNPKKVLVVGGGD-GG-VLREIARHSSVEQIDICEID 124 (308)
T ss_pred ecCccHHHHHHHHHHHHHhhC--CCCCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECC
Confidence 444444567544332222211 2367899999985 44 3344444 468899998864
No 382
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.82 E-value=0.28 Score=47.00 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=32.4
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..|+.++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 358899999999999999999999999996 777786
No 383
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=90.78 E-value=0.16 Score=45.68 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=35.5
Q ss_pred CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+++.+...|.+.+..+...... +..+|||||.|+ |+.+-..+...++.++++||-|
T Consensus 54 ~~e~de~~y~e~l~h~~~~~~~--~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD 109 (246)
T PF01564_consen 54 LSERDEFIYHEMLVHPPLLLHP--NPKRVLIIGGGD-GGTARELLKHPPVESITVVEID 109 (246)
T ss_dssp EETTTHHHHHHHHHHHHHHHSS--ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-
T ss_pred EEEechHHHHHHHhhhHhhcCC--CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecC
Confidence 4455556788877665544433 688999999764 5444444445568999998763
No 384
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.77 E-value=2.2 Score=40.01 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=58.6
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccc---cCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE---AWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~---nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
..+|.|+|+|++|-.++.-+..+|.++|.-+|-..-..+ -++..-+++..+. + -+.+.++++.+.
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~---~-----~vv~~i~~~T~g---- 253 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEV---D-----DVVEAIVELTDG---- 253 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhh---h-----hHHHHHHHhcCC----
Confidence 467999999999999999999999999999987332211 1111112222211 1 122333333221
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~ 146 (324)
..|.+|+|..+.+....--+.|++
T Consensus 254 ---------------G~d~~~e~~G~~~~~~~al~~~~~ 277 (366)
T COG1062 254 ---------------GADYAFECVGNVEVMRQALEATHR 277 (366)
T ss_pred ---------------CCCEEEEccCCHHHHHHHHHHHhc
Confidence 788999999999977777777877
No 385
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.74 E-value=1.4 Score=42.87 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=27.1
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|+|+|+|+.|..+|+.|...|.. ++..|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~-V~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAE-VTVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCE-EEEEeC
Confidence 589999999999999999999985 888775
No 386
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.73 E-value=1.1 Score=39.21 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.1
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+.+.+|+|.|. |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 34678999996 78999999999999985 777654
No 387
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.73 E-value=0.3 Score=47.34 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=29.1
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+|+|||.|-+|+++|..|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 35799999999999999999999986 899984
No 388
>PRK08589 short chain dehydrogenase; Validated
Probab=90.72 E-value=0.6 Score=42.14 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++++++++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r 38 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDI 38 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 366789999997 78999999999999975 777654
No 389
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.72 E-value=1.1 Score=39.50 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
..+++.+|+|.|. |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 4568889999995 7799999999999997 57787764
No 390
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.72 E-value=1.1 Score=43.68 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHhc-CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565 28 RLSK-SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (324)
Q Consensus 28 ~l~~-~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~ 63 (324)
++++ .+|+|+|.|+.|...+..|...|- -.+++.|.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~ 40 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDT 40 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4555 789999999999999999999954 45888876
No 391
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=90.71 E-value=2.2 Score=43.92 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=30.5
Q ss_pred HHHHHHhcCcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcC
Q 020565 24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDD 63 (324)
Q Consensus 24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~ 63 (324)
.+-...++.+|+|.|+ |-+|+.+++.|... |. +++.+|.
T Consensus 308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r 348 (660)
T PRK08125 308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDI 348 (660)
T ss_pred chhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeC
Confidence 4445667788999995 77999999999986 44 4777765
No 392
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.69 E-value=0.38 Score=43.01 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=33.8
Q ss_pred HHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 25 ~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.|.+++.++++|.|. ||+|.++++.|+..|.. +.+++.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence 588999999999997 78999999999999975 7777654
No 393
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.67 E-value=0.26 Score=46.00 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=58.6
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v 106 (324)
..|..++|.|+|+|.+|.++|+.|...|.. +..+|... . .... . .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~-~-----------~~~~---~----------------~--- 188 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG-R-----------PARP---D----------------R--- 188 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC-C-----------cccc---c----------------c---
Confidence 368999999999999999999999988885 66666520 0 0001 0 0
Q ss_pred eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHHH-hccCCccEEEee
Q 020565 107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCR-KLSKRVAFYTVD 157 (324)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~-~~~~~ip~i~~~ 157 (324)
...+++++.+|+|+.+. .+.+++..+|+..- +++.+--||+++
T Consensus 189 --------~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 189 --------LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred --------cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 02356778888887766 46777777776542 223455566655
No 394
>PLN02740 Alcohol dehydrogenase-like
Probab=90.62 E-value=1.6 Score=41.66 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=29.3
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 568999999999999999999999977888766
No 395
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.61 E-value=0.7 Score=40.77 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence 57789999997 78999999999999984 777664
No 396
>PRK05650 short chain dehydrogenase; Provisional
Probab=90.58 E-value=0.86 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=25.4
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|+|.|+ |++|.++++.|+..|.. +++++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWR-LALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 6899996 78999999999999985 666654
No 397
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=90.57 E-value=1.4 Score=45.87 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.1
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~ 63 (324)
.+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 569999999999999999999995 35888876
No 398
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.57 E-value=0.29 Score=50.89 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=29.3
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+|.|||+|..|+.||..++.+|+. ++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeCC
Confidence 3699999999999999999999986 9999985
No 399
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.54 E-value=1.4 Score=41.69 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=53.4
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEE-EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~-lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
+|.|+|+ |.+|.++++.|...-.-++. +++.+. .. |+.- .+..|.+.... .
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~~--------~~~~~~l~~~~-~ 54 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKPV--------SEVHPHLRGLV-D 54 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCCh--------HHhCccccccC-C
Confidence 7999998 88999999999966333344 445421 11 3321 12223221100 0
Q ss_pred CCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565 111 GDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (324)
Q Consensus 111 ~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~ 158 (324)
..+.+ ...++.++.|+||.|+.+......... +.+ .++.+|+.+.
T Consensus 55 ~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~-~~~--~G~~VIDlS~ 100 (346)
T TIGR01850 55 LNLEPIDEEEIAEDADVVFLALPHGVSAELAPE-LLA--AGVKVIDLSA 100 (346)
T ss_pred ceeecCCHHHhhcCCCEEEECCCchHHHHHHHH-HHh--CCCEEEeCCh
Confidence 01111 113344589999999987655555444 445 5677776653
No 400
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.53 E-value=1.3 Score=39.26 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.2
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD 62 (324)
.++|+|.|+ |++|..+++.|+..|.. +++.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 357999997 78999999999999975 44443
No 401
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.51 E-value=1.8 Score=44.41 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=41.2
Q ss_pred CCCCHHHHHHhHHHHHh---hhHHH-HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 4 EELTEQETALYDRQIRV---WGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l---~g~~~-q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+++--.++||--..-. |.... ...-+..+|+|||.|..|...|..|++.|.. ++++|..
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~ 342 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRH 342 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCC
Confidence 34666667777543222 21110 0112478999999999999999999999985 9998864
No 402
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=90.50 E-value=1 Score=42.44 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=52.2
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
+|+|+|+ |.+|.++++.|...|...+.++ ++.+..+. |+.=. + ....+...+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~-------------~~as~~~~---g~~~~---------~-~~~~~~~~~~ 54 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLV-------------LLASDRSA---GRKVT---------F-KGKELEVNEA 54 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEE-------------EEeccccC---CCeee---------e-CCeeEEEEeC
Confidence 6899995 7799999999998766544332 11122222 43211 0 0122222211
Q ss_pred CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
+ .+.++++|+||.|+.+...+....+. .+ .+..+|+..
T Consensus 55 --~---~~~~~~~D~v~~a~g~~~s~~~a~~~-~~--~G~~VID~s 92 (339)
T TIGR01296 55 --K---IESFEGIDIALFSAGGSVSKEFAPKA-AK--CGAIVIDNT 92 (339)
T ss_pred --C---hHHhcCCCEEEECCCHHHHHHHHHHH-HH--CCCEEEECC
Confidence 1 23357899999999887666655544 34 456566444
No 403
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.49 E-value=0.68 Score=40.45 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+.+.+|+|.|+ |++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 34578999996 88999999999999987 7777664
No 404
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.47 E-value=0.19 Score=43.04 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=31.2
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSAN 74 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~ 74 (324)
.+|.|+|+|=+|..+|-.|+..|.. ++-+|.+.-..+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g 42 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNG 42 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTT
T ss_pred CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhc
Confidence 3799999999999999999999965 88888877666666554
No 405
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.44 E-value=0.34 Score=44.76 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+..++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 568999999999999999999999997 79988773
No 406
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.43 E-value=0.5 Score=45.97 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=42.9
Q ss_pred cEEEEcCchhHHHHHH--HHH---HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHH----HHHhhCCC
Q 020565 33 HILVCGMKGTVAEFCK--NIV---LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD----SLKDFNPM 103 (324)
Q Consensus 33 ~VliiG~g~lGsei~k--~L~---~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~----~l~~lnp~ 103 (324)
+|.|||+|++|...+. .++ .....+++|+|.+. .+.+.... .+....+.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~----------------------e~l~~~~~~~~~~~~~~~~~ 59 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE----------------------ERLETVEILAKKIVEELGAP 59 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH----------------------HHHHHHHHHHHHHHHhcCCC
Confidence 6999999999987555 454 12224799988632 22222222 23333444
Q ss_pred CeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565 104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~ 132 (324)
.++... ....+.++++|+||.+..
T Consensus 60 ~~I~~t-----tD~~eal~~AD~Vi~ai~ 83 (423)
T cd05297 60 LKIEAT-----TDRREALDGADFVINTIQ 83 (423)
T ss_pred eEEEEe-----CCHHHHhcCCCEEEEeeE
Confidence 444432 122456789999998875
No 407
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=90.43 E-value=0.38 Score=45.53 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=35.9
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl 71 (324)
.+.+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 799999888755443
No 408
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.40 E-value=0.91 Score=40.36 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCHHHHHHhHHHHHhhhH-HH------------------HHH----HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEc
Q 020565 6 LTEQETALYDRQIRVWGA-DA------------------QRR----LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~-~~------------------q~~----l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD 62 (324)
.+..|.+.|++=-..|+. ++ +-+ +...+||=|||| |..++.-||+.| .+++-+|
T Consensus 12 id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCG--gG~Lse~mAr~G-a~VtgiD 88 (243)
T COG2227 12 VDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCG--GGILSEPLARLG-ASVTGID 88 (243)
T ss_pred CCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCC--ccHhhHHHHHCC-CeeEEec
Confidence 556777778776666642 11 112 678999999998 458999999999 5588777
Q ss_pred CCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCC--CHHHHHHH
Q 020565 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLI 140 (324)
Q Consensus 63 ~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~--~~~~~~~l 140 (324)
- ++.-.++++.+-.+-. +.++.......+....- ..||+|++-.- -.+....+
T Consensus 89 ~----------------------se~~I~~Ak~ha~e~g--v~i~y~~~~~edl~~~~-~~FDvV~cmEVlEHv~dp~~~ 143 (243)
T COG2227 89 A----------------------SEKPIEVAKLHALESG--VNIDYRQATVEDLASAG-GQFDVVTCMEVLEHVPDPESF 143 (243)
T ss_pred C----------------------ChHHHHHHHHhhhhcc--ccccchhhhHHHHHhcC-CCccEEEEhhHHHccCCHHHH
Confidence 6 3333444444433322 33433333222221111 58999987642 22233335
Q ss_pred HHHHHh
Q 020565 141 NEKCRK 146 (324)
Q Consensus 141 ~~~~~~ 146 (324)
-+.|.+
T Consensus 144 ~~~c~~ 149 (243)
T COG2227 144 LRACAK 149 (243)
T ss_pred HHHHHH
Confidence 555555
No 409
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=90.40 E-value=1.7 Score=40.74 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.7
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999996 779999999999999776666664
No 410
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.38 E-value=0.79 Score=40.67 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|.+++++|.|. |++|..+++.|+..|. ++.+.|.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 56788999996 7899999999999997 4766654
No 411
>PRK07589 ornithine cyclodeaminase; Validated
Probab=90.38 E-value=0.94 Score=42.84 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=56.9
Q ss_pred HHHHh---cCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565 26 QRRLS---KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (324)
Q Consensus 26 q~~l~---~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln 101 (324)
-+.|. ..+++|+|+|..+..-++.+. .-.+.++.+++. ...|++..++++++.
T Consensus 121 ~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~~- 177 (346)
T PRK07589 121 AKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAGP- 177 (346)
T ss_pred HHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHhc-
Confidence 35554 477999999999987776554 446778888755 666888888888863
Q ss_pred CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565 102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
.+++... +..++.+++.|+|+.|+.+.
T Consensus 178 -~~~v~~~-----~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 178 -GLRIVAC-----RSVAEAVEGADIITTVTADK 204 (346)
T ss_pred -CCcEEEe-----CCHHHHHhcCCEEEEecCCC
Confidence 3444442 23467788999999998653
No 412
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.37 E-value=1.6 Score=41.74 Aligned_cols=35 Identities=6% Similarity=-0.079 Sum_probs=28.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+.+-+|+|||+ |.+|..+++.|....-.+++.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 35678999999 999999999999653335777876
No 413
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.37 E-value=1.8 Score=45.03 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=28.4
Q ss_pred CcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCC
Q 020565 32 SHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d 64 (324)
.+|.|||+|..|+.+|..++ .+|+. ++++|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIP-VRIKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCC
Confidence 37999999999999999998 58986 8999875
No 414
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=90.33 E-value=0.59 Score=41.54 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|.+++|+|.|+ |++|..+++.|+..|.. +.++|.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r 43 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI 43 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 67889999996 78999999999999975 666654
No 415
>PLN02253 xanthoxin dehydrogenase
Probab=90.32 E-value=1 Score=40.58 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++++++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence 467788999995 78999999999999975 777765
No 416
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=90.29 E-value=1.6 Score=42.63 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=26.8
Q ss_pred cEEEEcCchhHHH-HHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~g~lGse-i~k~L~~~Gv~~i~lvD~ 63 (324)
++.++|.|+.|.. +|+.|...|.. ++..|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~-v~~~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQ-VSGSDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCe-EEEECC
Confidence 5889999999998 99999999987 777776
No 417
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=90.27 E-value=2.3 Score=38.98 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=58.9
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
+|||.|+ |-+|+.+++.|...| +++.+|.... + ...|+ - ..+.+.+.+++..|++-++.-..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl---~--d~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDF---S--NPEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCC---C--CHHHHHHHHHhcCCCEEEECCcc
Confidence 6999997 789999999999888 5777775311 1 12344 2 23445556666666654443211
Q ss_pred CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565 112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (324)
Q Consensus 112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g 163 (324)
. .. .....+.+.. -..|......+-+.|++ .++++|+.++...||
T Consensus 65 ~--~~-~~~~~~~~~~--~~~N~~~~~~l~~aa~~--~g~~~v~~Ss~~Vy~ 109 (299)
T PRK09987 65 T--AV-DKAESEPEFA--QLLNATSVEAIAKAANE--VGAWVVHYSTDYVFP 109 (299)
T ss_pred C--Cc-chhhcCHHHH--HHHHHHHHHHHHHHHHH--cCCeEEEEccceEEC
Confidence 0 00 0000000000 00122233467788988 778899887755443
No 418
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=90.27 E-value=0.3 Score=45.21 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=28.4
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v 66 (324)
..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4699999999999999999999997 899988543
No 419
>PRK06270 homoserine dehydrogenase; Provisional
Probab=90.22 E-value=1.7 Score=41.03 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.8
Q ss_pred CcEEEEcCchhHHHHHHHHHHh
Q 020565 32 SHILVCGMKGTVAEFCKNIVLA 53 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~ 53 (324)
-+|.|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999765
No 420
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.22 E-value=1.4 Score=38.60 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.6
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++++|.|+ |++|..+++.|+..|.. +++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence 45788999995 78999999999999985 777663
No 421
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.22 E-value=1.1 Score=41.76 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=50.3
Q ss_pred cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~ 109 (324)
..++.|+|+|.-+-.-++.+.. .++.++.++|. ...+++..++++++ . .+.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence 3579999999999988887754 67999999876 66688999999998 3 5555544
Q ss_pred eCCCCCCchhhcCCccEEEEcCCCH
Q 020565 110 KGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 110 ~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
. ..++.++++|+|+.|+.+.
T Consensus 184 ~-----~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 184 D-----SAEEAVRGADIIVTATPST 203 (313)
T ss_dssp S-----SHHHHHTTSSEEEE----S
T ss_pred c-----chhhhcccCCEEEEccCCC
Confidence 2 3467789999999988763
No 422
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.20 E-value=0.57 Score=42.46 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++.++++|.| .|++|.++++.|+..|.. +.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 5678899999 478999999999999985 777664
No 423
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.12 E-value=0.91 Score=42.53 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAK-VVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 456788999996 78999999999999974 777664
No 424
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.11 E-value=1.1 Score=42.62 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=28.2
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++.+|+|.|. |-+|+.+++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999997 7899999999999996 4787775
No 425
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.11 E-value=1.3 Score=45.67 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.5
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 457899999999999999999999985 9999864
No 426
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.10 E-value=0.91 Score=44.41 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=31.1
Q ss_pred HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.++++.+|+|.|. |.+|+.+++.|+..|.. ++++|.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~-V~~~d~ 79 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYE-VAIVDN 79 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEec
Confidence 4677788999995 88999999999999974 888885
No 427
>PRK08643 acetoin reductase; Validated
Probab=90.08 E-value=1.1 Score=39.72 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=26.6
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++|.|. |++|..+++.|+..|.. +.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 467899995 78999999999999974 777764
No 428
>PRK05855 short chain dehydrogenase; Validated
Probab=90.02 E-value=0.72 Score=46.06 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 23 ~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus 307 ~~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 307 GRPRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 34456788899999996 89999999999999986 777664
No 429
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.91 E-value=1.9 Score=37.64 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 6799999999999998 4777655
No 430
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=89.88 E-value=0.24 Score=49.24 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=44.3
Q ss_pred HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHH----HhCC------CcEEEEc
Q 020565 11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIV----LAGV------GSLTLMD 62 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~----~~Gv------~~i~lvD 62 (324)
+++|..++..|..+-| ++|++.+|++.|+|+.|.-+|+.|+ ..|+ ++|.++|
T Consensus 259 L~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD 338 (559)
T PTZ00317 259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVD 338 (559)
T ss_pred HHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence 4677766766644333 5789999999999999999999988 4799 7999999
Q ss_pred CCc
Q 020565 63 DRV 65 (324)
Q Consensus 63 ~d~ 65 (324)
.+-
T Consensus 339 ~~G 341 (559)
T PTZ00317 339 SKG 341 (559)
T ss_pred CCC
Confidence 864
No 431
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.85 E-value=0.36 Score=45.61 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=31.3
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v 66 (324)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4679999999999999999999997 5999998754
No 432
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=89.84 E-value=0.65 Score=42.53 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=56.8
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
||||+|. |-+|+.+++.|...|.. +...+.. ++ .-...+.+.+.+.+..|++-|..-..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~----------------~~---dl~d~~~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYE-VIATSRS----------------DL---DLTDPEAVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT----------------CS----TTSHHHHHHHHHHH--SEEEE----
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch----------------hc---CCCCHHHHHHHHHHhCCCeEecccee
Confidence 7999995 77999999999998865 3333433 12 22245677778888888765554211
Q ss_pred C-CC--C-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565 112 D-LS--S-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (324)
Q Consensus 112 ~-~~--~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~ 162 (324)
. ++ + ..+..+ ..|......|.+.|.+ .++++|+.++...+
T Consensus 62 ~~~~~ce~~p~~a~---------~iN~~~~~~la~~~~~--~~~~li~~STd~VF 105 (286)
T PF04321_consen 62 TNVDACEKNPEEAY---------AINVDATKNLAEACKE--RGARLIHISTDYVF 105 (286)
T ss_dssp --HHHHHHSHHHHH---------HHHTHHHHHHHHHHHH--CT-EEEEEEEGGGS
T ss_pred ecHHhhhhChhhhH---------HHhhHHHHHHHHHHHH--cCCcEEEeeccEEE
Confidence 0 00 0 000000 0022233567789999 99999999887544
No 433
>PLN02650 dihydroflavonol-4-reductase
Probab=89.78 E-value=3.5 Score=38.62 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=26.2
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+.+|+|.|+ |.+|+.+++.|+..|.. +++++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYT-VRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 568999996 78999999999999975 655543
No 434
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=89.78 E-value=1.7 Score=41.04 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=52.6
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
..+|.|+|+ |.+|.++++.|...+.- ++..+.. .... |+.-.. ....+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las---------------~rsa---Gk~~~~----------~~~~~~ 58 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS---------------ARSA---GKKVTF----------EGRDYT 58 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc---------------cCCC---CCeeee----------cCceeE
Confidence 468999997 66999999999986654 3433322 2222 432211 011221
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
.. +...+.++++|+||.|..+.....+.-++ .+ .+.++|+.+
T Consensus 59 v~-----~~~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~--~g~~VIDlS 100 (344)
T PLN02383 59 VE-----ELTEDSFDGVDIALFSAGGSISKKFGPIA-VD--KGAVVVDNS 100 (344)
T ss_pred EE-----eCCHHHHcCCCEEEECCCcHHHHHHHHHH-Hh--CCCEEEECC
Confidence 11 11123357899999999876655555544 34 566666554
No 435
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.77 E-value=1.9 Score=41.92 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.5
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+.+++|+|+|.|+.|...++.|...|. +++..|..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 356789999999999999999999997 58888863
No 436
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.73 E-value=1 Score=42.00 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++.+|+|.|+ |.+|+++++.|+..|.. ++++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence 45678999996 78999999999999975 766654
No 437
>PRK01581 speE spermidine synthase; Validated
Probab=89.70 E-value=1.1 Score=42.56 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=37.4
Q ss_pred CCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 5 ~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
++|+.+.-.|..-+.--. ........+||++|+| .|..+...|...++.++++||-|.
T Consensus 127 Q~se~DE~iYHE~Lvhp~--m~~h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDp 184 (374)
T PRK01581 127 QFSSVDEQIYHEALVHPI--MSKVIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDG 184 (374)
T ss_pred ccccccHHHHHHHHHHHH--HHhCCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCH
Confidence 355555556765433322 2344566799999976 566555555556789999998754
No 438
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=89.69 E-value=2.9 Score=37.97 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
.+|.+||+|..|..++.-|..+|. .+|.+.++ ...|.+ .+.+..+.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------------------~~e~~~----~l~~~~g~~-~-- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------------------SEEKRA----ALAAEYGVV-T-- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------------------CHHHHH----HHHHHcCCc-c--
Confidence 479999999999999999999994 45655444 221222 334334332 1
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
.....+.....|+||.|.-+......+.++-- ...+..+|+..
T Consensus 53 -----~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~~~lvISia 95 (266)
T COG0345 53 -----TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTKDKLVISIA 95 (266)
T ss_pred -----cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccCCCEEEEEe
Confidence 22335667789999999988655544444431 11344455544
No 439
>PRK09126 hypothetical protein; Provisional
Probab=89.68 E-value=0.41 Score=45.61 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=31.3
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
.+..|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~ 36 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQP 36 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 457899999999999999999999996 89998764
No 440
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.66 E-value=0.53 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=30.5
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
++|+|||.|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999997 599999875
No 441
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=89.66 E-value=1.6 Score=37.85 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.7
Q ss_pred EEEEcC-chhHHHHHHHHHHhCCCcE
Q 020565 34 ILVCGM-KGTVAEFCKNIVLAGVGSL 58 (324)
Q Consensus 34 VliiG~-g~lGsei~k~L~~~Gv~~i 58 (324)
|+|+|. |-+|+++++.|...|...+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~ 26 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVI 26 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccc
Confidence 789995 6799999999999998744
No 442
>PRK06523 short chain dehydrogenase; Provisional
Probab=89.61 E-value=1.1 Score=39.91 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
++++++|+|.|+ |++|.++++.|+..|.. +.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence 467889999996 79999999999999985 88887653
No 443
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=89.59 E-value=1 Score=41.30 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.8
Q ss_pred EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
|+|.|+ |-+|+.+++.|...|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 788885 8899999999999998778888864
No 444
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.59 E-value=4.2 Score=36.44 Aligned_cols=76 Identities=8% Similarity=0.041 Sum_probs=43.5
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
..+|+=+||| .|. .+..|+..| .+++.+|. .....+.+++++.+..-.-+++...
T Consensus 45 ~~~vLDiGcG-~G~-~a~~la~~g-~~v~~vD~----------------------s~~~l~~a~~~~~~~g~~~~v~~~~ 99 (255)
T PRK11036 45 PLRVLDAGGG-EGQ-TAIKLAELG-HQVILCDL----------------------SAEMIQRAKQAAEAKGVSDNMQFIH 99 (255)
T ss_pred CCEEEEeCCC-chH-HHHHHHHcC-CEEEEEEC----------------------CHHHHHHHHHHHHhcCCccceEEEE
Confidence 4689999998 464 566777777 45888876 3334455566665543222344443
Q ss_pred CCCCCCchhhcCCccEEEEcC
Q 020565 111 GDLSSLDGEFYDKFDVVVVSC 131 (324)
Q Consensus 111 ~~~~~~~~~~~~~~diVi~~~ 131 (324)
.+..+.....-..||+|++..
T Consensus 100 ~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 100 CAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred cCHHHHhhhcCCCCCEEEehh
Confidence 333222111224799998653
No 445
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=89.51 E-value=1.6 Score=46.85 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=30.7
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
..++|+|||.|..|..+|..|++.|.. ++|+|..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~-VtV~Ek~ 571 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHP-VTVFERE 571 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCe-EEEEecc
Confidence 467899999999999999999999984 9999874
No 446
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.50 E-value=1.7 Score=42.44 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=32.5
Q ss_pred HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.|+.++|+|.|.|-+|+..++.|...|..-+.+-|.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999999999999999999999999987777774
No 447
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.48 E-value=2.4 Score=38.26 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..|+.++|+|.|.|.+|+.+++.|...|.+-+.+.|.
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4578899999999999999999999999876667774
No 448
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.47 E-value=1.7 Score=38.12 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|+.++|+|.|+ |++|.++++.|+..|.. +++++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r 38 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGAT-VILVAR 38 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeC
Confidence 56789999996 78999999999999975 777765
No 449
>PRK06196 oxidoreductase; Provisional
Probab=89.45 E-value=1.4 Score=40.69 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.++.++|+|.|+ |++|.++++.|+..|.. +++++.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R 58 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPAR 58 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 356788999997 78999999999999975 777665
No 450
>PTZ00188 adrenodoxin reductase; Provisional
Probab=89.42 E-value=2.1 Score=42.40 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=55.7
Q ss_pred hcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh--CCCCeE
Q 020565 30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--NPMVRV 106 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l--np~v~v 106 (324)
+..+|+|||.|+.|.++|..|+ ..|+. ++|+|....--- +-|. -..++ ..+.+.+.+.+.+. ++.+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgG-LvR~-GVaPd------h~~~k~v~~~f~~~~~~~~v~f 108 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYG-LIRY-GVAPD------HIHVKNTYKTFDPVFLSPNYRF 108 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCcc-EEEE-eCCCC------CccHHHHHHHHHHHHhhCCeEE
Confidence 4678999999999999999765 56765 999988443321 1221 11122 12333444444332 345444
Q ss_pred eEeeCCCCC--CchhhcCCccEEEEcCCCH
Q 020565 107 SVEKGDLSS--LDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 107 ~~~~~~~~~--~~~~~~~~~diVi~~~~~~ 134 (324)
.. +..+.. ..+++...||.||.++...
T Consensus 109 ~g-nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 109 FG-NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred Ee-eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 32 222221 2355567899999998764
No 451
>PRK06184 hypothetical protein; Provisional
Probab=89.41 E-value=0.43 Score=47.33 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=30.7
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+..|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 457899999999999999999999996 9999874
No 452
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.37 E-value=0.97 Score=40.08 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+..++++|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 67889999996 7899999999999997 58887763
No 453
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=89.36 E-value=1.7 Score=39.76 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=53.0
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH---hhCCCCeEe
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK---DFNPMVRVS 107 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~---~lnp~v~v~ 107 (324)
++|+.||+|++--.........|.+ .++-+|.|.-. .+.+.+-++ .+. -.+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A----------------------~~~a~~lv~~~~~L~--~~m~ 177 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEA----------------------NELARRLVASDLGLS--KRMS 177 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHH----------------------HHHHHHHHH---HH---SSEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHH----------------------HHHHHHHHhhccccc--CCeE
Confidence 5999999999887766666666665 35555653211 112222222 233 3444
Q ss_pred EeeCCCCCCchhhcCCccEEEEcCCCH----HHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565 108 VEKGDLSSLDGEFYDKFDVVVVSCCSV----TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 108 ~~~~~~~~~~~~~~~~~diVi~~~~~~----~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
.+..+..+.. ..+.+||+|+.+..-. +....+..+.+.+..+..++.=...|+.+++|
T Consensus 178 f~~~d~~~~~-~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LY 239 (276)
T PF03059_consen 178 FITADVLDVT-YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLY 239 (276)
T ss_dssp EEES-GGGG--GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS
T ss_pred EEecchhccc-cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcC
Confidence 5544443322 2367999998876432 44556777777666787788888889888554
No 454
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=89.36 E-value=0.51 Score=43.67 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.3
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcccc
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE 68 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~ 68 (324)
.|+|||.|-+|+.+|..|++.|. +++|+|...+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999999 699999985544
No 455
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.22 E-value=2.3 Score=46.00 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=54.9
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCccc--CCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI--PPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~--~~~di~~~G~~ka~~~~~~l~~lnp~v~v~ 107 (324)
+..+|+|||.|..|...|..|++.|.. ++|+|... .++...-+ ..-.. ++.-.+...+.+++++ +++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~-VtV~E~~~----~~GG~l~~gip~~rl---~~e~~~~~~~~l~~~G--v~~~ 498 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD-VTVYEALH----VVGGVLQYGIPSFRL---PRDIIDREVQRLVDIG--VKIE 498 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC----CCcceeeccCCccCC---CHHHHHHHHHHHHHCC--CEEE
Confidence 357899999999999999999999985 99998642 22222111 11112 3333444455555554 4443
Q ss_pred EeeCCCC-CC-chhhc--CCccEEEEcCCC
Q 020565 108 VEKGDLS-SL-DGEFY--DKFDVVVVSCCS 133 (324)
Q Consensus 108 ~~~~~~~-~~-~~~~~--~~~diVi~~~~~ 133 (324)
... .+. +. ..... .+||.||.++..
T Consensus 499 ~~~-~vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 499 TNK-VIGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred eCC-ccCCccCHHHHhhccCCCEEEEecCC
Confidence 321 111 11 12222 369999998875
No 456
>PRK15076 alpha-galactosidase; Provisional
Probab=89.18 E-value=1.5 Score=42.74 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=57.8
Q ss_pred CcEEEEcCchhHHHHHH--HHH-HhCC--CcEEEEcCCccccccCCCCcccCCCCcccCCccH-HHH-HHHHHHhhCCCC
Q 020565 32 SHILVCGMKGTVAEFCK--NIV-LAGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI-AEV-CCDSLKDFNPMV 104 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k--~L~-~~Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k-a~~-~~~~l~~lnp~v 104 (324)
.+|.|||+|++|...+- .++ ..+. .+++|+|-+. .+.+ ++. +...+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~--------------------er~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP--------------------ERLEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH--------------------HHHHHHHHHHHHHHHhcCCCe
Confidence 47999999998866554 554 2233 3799998622 1111 122 233333444455
Q ss_pred eEeEeeCCCCCCchhhcCCccEEEEcCCCH--HHHHHHH-HHHHhccCCccEEEeeecCceEEEE
Q 020565 105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSV--TTKKLIN-EKCRKLSKRVAFYTVDCRDSCGEIF 166 (324)
Q Consensus 105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~~~--~~~~~l~-~~~~~~~~~ip~i~~~~~G~~g~v~ 166 (324)
+++... ...+.++++|+||.+.... ......+ ++..+ +|+-==...+.|.-|.++
T Consensus 62 ~i~~tt-----D~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk--~G~~~~r~et~G~GG~~~ 119 (431)
T PRK15076 62 KITATT-----DRREALQGADYVINAIQVGGYEPCTVTDFEIPKK--YGLRQTIGDTLGIGGIMR 119 (431)
T ss_pred EEEEEC-----CHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHH--cCCeeecccCcCccchhh
Confidence 655432 1245678999999887643 2222233 45556 655311125555555443
No 457
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.18 E-value=1.1 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=25.6
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL 60 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l 60 (324)
|+++.++|.|+ |++|..+++.|+..|.. +.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~ 32 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFK-VVA 32 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCE-EEE
Confidence 34677899996 88999999999999976 444
No 458
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=89.17 E-value=1 Score=40.27 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 456788999996 68999999999999976 666654
No 459
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=89.16 E-value=0.98 Score=40.12 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=30.6
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
+++++++|.|. |++|.++++.|+..|.. +.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence 56788999996 88999999999999975 77877654
No 460
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.16 E-value=2.5 Score=38.24 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=29.7
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5678999999999999999998999987877764
No 461
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.11 E-value=0.46 Score=39.76 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (324)
Q Consensus 27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~ 67 (324)
-.|..++++|+|.|-+|.-+|+.|...|.. +++.|.|.+.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~ 58 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIR 58 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHH
Confidence 467788999999999999999999999975 8998886644
No 462
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.11 E-value=2.3 Score=41.89 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCCCHHHHHHhHHHHHh---hhHHH-HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 4 EELTEQETALYDRQIRV---WGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 4 ~~l~~~e~~ry~Rqi~l---~g~~~-q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
.+++--.++||--..-. |...- ...-...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus 110 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 110 GAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 34666667777533211 11100 0112467899999999999999999999986 8888764
No 463
>PRK08628 short chain dehydrogenase; Provisional
Probab=89.11 E-value=1.2 Score=39.59 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|++++++|.|. |++|..+++.|+..|.. +.+++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 67889999995 78999999999999986 666544
No 464
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.11 E-value=0.43 Score=45.80 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.5
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
...|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 35799999999999999999999985 99999764
No 465
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=89.10 E-value=1.8 Score=41.34 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=74.8
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe-E
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-V 108 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~-~ 108 (324)
.++.|-|||++-.|+.++-|.+.-|.. +.+...+.-..+.+-.+.--.. ++ .+-+-.|.....|+. |..-+- +
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~-VavyNRt~~ktd~f~~~~~~~k-~i--~~~~sieefV~~Le~--PRkI~lMV 75 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYT-VAVYNRTTEKTDEFLAERAKGK-NI--VPAYSIEEFVASLEK--PRKILLMV 75 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCce-EEEEeCCHHHHHHHHHhCccCC-Cc--cccCcHHHHHHHhcC--CceEEEEE
Confidence 356799999999999999999999987 7777664433322211111011 22 155555555665555 432111 1
Q ss_pred eeCC-CCC---CchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565 109 EKGD-LSS---LDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (324)
Q Consensus 109 ~~~~-~~~---~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G 160 (324)
.... ++. ....+++.-|+||+... ++..-.+-++...+ .++-||-.++.|
T Consensus 76 kAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~--~Gi~FvG~GVSG 130 (473)
T COG0362 76 KAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE--KGILFVGMGVSG 130 (473)
T ss_pred ecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHh--cCCeEEeccccc
Confidence 1111 122 23456788999999875 44444445566667 799999888876
No 466
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.09 E-value=0.44 Score=45.33 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=30.5
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
...|+|||.|..|+.+|..|++.|+. ++|+|...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence 45799999999999999999999986 99999864
No 467
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=89.00 E-value=3.1 Score=38.01 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=24.8
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+|+|.|+ |.+|..+++.|...|.. ++++|.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~~ 31 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLDN 31 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEeC
Confidence 5899985 88999999999999975 666653
No 468
>PRK06823 ornithine cyclodeaminase; Validated
Probab=89.00 E-value=2.1 Score=39.88 Aligned_cols=80 Identities=15% Similarity=0.036 Sum_probs=56.1
Q ss_pred HHHHh---cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565 26 QRRLS---KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (324)
Q Consensus 26 q~~l~---~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln 101 (324)
-+.|. .+++.|+|+|..+-.-+..+.. -.+.++.++|. ...|++..++.+++..
T Consensus 120 ~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~~ 177 (315)
T PRK06823 120 ARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQALG 177 (315)
T ss_pred HHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhcC
Confidence 34554 4789999999999888887664 35677777655 5668888888887643
Q ss_pred CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565 102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (324)
Q Consensus 102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~ 134 (324)
+.+... +...+...++|+|+.|+.+.
T Consensus 178 --~~v~~~-----~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 178 --FAVNTT-----LDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred --CcEEEE-----CCHHHHhcCCCEEEEecCCC
Confidence 333332 23466778999999988653
No 469
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.96 E-value=1 Score=39.85 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
|.+++|+|.|. |++|..+++.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 46788999996 7899999999999997 5778765
No 470
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.95 E-value=0.55 Score=44.40 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=29.8
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v 66 (324)
.|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999997 5999998654
No 471
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.94 E-value=1.9 Score=40.55 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=51.4
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~ 110 (324)
.+|+|+|+ |.+|.++++.|...|...+.+. .+.+..+. |+.-. ++ ...+...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~-------------~l~s~~~~---g~~l~---------~~-g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLR-------------LLASARSA---GKELS---------FK-GKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEE-------------EEEccccC---CCeee---------eC-CceeEEe-
Confidence 47999997 6799999999998766533221 01111222 33210 11 1222222
Q ss_pred CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
++. ...++++|+||.|+.....+....++ .+ .+..+|+.+
T Consensus 55 -d~~---~~~~~~vDvVf~A~g~g~s~~~~~~~-~~--~G~~VIDlS 94 (334)
T PRK14874 55 -DLT---TFDFSGVDIALFSAGGSVSKKYAPKA-AA--AGAVVIDNS 94 (334)
T ss_pred -eCC---HHHHcCCCEEEECCChHHHHHHHHHH-Hh--CCCEEEECC
Confidence 111 22357899999999877666655554 34 455566433
No 472
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.94 E-value=1.3 Score=38.97 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
++.++++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r 37 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQ 37 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence 56789999997 57999999999999986 777654
No 473
>PRK08013 oxidoreductase; Provisional
Probab=88.93 E-value=0.47 Score=45.55 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=30.6
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
+..|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 46899999999999999999999986 89998754
No 474
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=88.91 E-value=0.49 Score=45.55 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=28.6
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+|+|||.|+.|+.+|..|++.|+. +.++|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999986 8888864
No 475
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.90 E-value=1.9 Score=42.23 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=30.2
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
...+|+|||.|..|.+.|..|++.|. +++++|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 45789999999999999999999997 49999864
No 476
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.90 E-value=2.8 Score=41.34 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=30.4
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 346899999999999999999999985 9999874
No 477
>PRK06185 hypothetical protein; Provisional
Probab=88.88 E-value=0.55 Score=44.98 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.3
Q ss_pred hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
.+..|+|||.|.+|..+|..|++.|+. ++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 457899999999999999999999986 99999753
No 478
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.86 E-value=2.2 Score=38.06 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=26.2
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
..+|+|.|+ ||+|.++++.|+..|--++++++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 456999996 789999999999986445777654
No 479
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=88.82 E-value=0.7 Score=43.54 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=30.7
Q ss_pred cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (324)
Q Consensus 33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~ 67 (324)
.|+|||.|-+|+.+|..|+..|.. ++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~-V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLS-VTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence 699999999999999999999974 9999987754
No 480
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=88.80 E-value=1.6 Score=38.46 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.1
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLM 61 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv 61 (324)
++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~-v~~~ 32 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWS-VGIN 32 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCE-EEEE
Confidence 57999996 68999999999999975 4443
No 481
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=88.75 E-value=0.86 Score=41.84 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCHHHHHHhHHHHHhh-hHHHHHHH--hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565 6 LTEQETALYDRQIRVW-GADAQRRL--SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~-g~~~q~~l--~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di 82 (324)
++....+-++|.+.-- ....-.+. ...+|-.||+|-.|+.+++||..+|.. +|++|.+.-....+.. -
T Consensus 7 ~~~~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f~~--------~ 77 (327)
T KOG0409|consen 7 LAPSILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEFQE--------A 77 (327)
T ss_pred cccHHHHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHHHH--------h
Confidence 4555566666654441 11111223 378899999999999999999999987 9999853322221111 0
Q ss_pred ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCC--C-C--chhhcC-----CccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS--S-L--DGEFYD-----KFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152 (324)
Q Consensus 83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~--~-~--~~~~~~-----~~diVi~~~~~~~~~~~l~~~~~~~~~~ip 152 (324)
|-.-++.=++-.+ ..++-+........ + . ..-.++ +...|-.++-++.+...|.+..+. .+--
T Consensus 78 ---Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~--~~~~ 150 (327)
T KOG0409|consen 78 ---GARVANSPAEVAE--DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN--KGGR 150 (327)
T ss_pred ---chhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh--CCCe
Confidence 2211111111111 12233333222211 0 0 011111 122244455688889999999988 8888
Q ss_pred EEEeeecCc
Q 020565 153 FYTVDCRDS 161 (324)
Q Consensus 153 ~i~~~~~G~ 161 (324)
|+++-+.|-
T Consensus 151 ~vDAPVSGg 159 (327)
T KOG0409|consen 151 FVDAPVSGG 159 (327)
T ss_pred EEeccccCC
Confidence 898888773
No 482
>PRK05872 short chain dehydrogenase; Provisional
Probab=88.71 E-value=2 Score=39.33 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
+++++|+|.|. ||+|..+++.|+..|. ++.+++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 67789999996 7899999999999997 4777765
No 483
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=88.68 E-value=0.58 Score=45.52 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=28.2
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
.+|+|||.|-+|+++|..|++.|+. ++|++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~ 31 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEM 31 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEec
Confidence 3799999999999999999999986 888874
No 484
>PLN02503 fatty acyl-CoA reductase 2
Probab=88.67 E-value=2.7 Score=42.77 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=73.6
Q ss_pred hHHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhC--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH
Q 020565 22 GADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAG--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK 98 (324)
Q Consensus 22 g~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~ 98 (324)
|..-++-+++++|+|-|+ |-+|..+++.|.+.+ +++|.+.....-..+-..|.. ..-....+.+.++
T Consensus 110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----------~~l~~~~lf~~l~ 179 (605)
T PLN02503 110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----------NEVIDAELFKCLQ 179 (605)
T ss_pred CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----------HHHhhhhhHHHHH
Confidence 445578899999999998 669999999999865 677877644211111000100 0000011223455
Q ss_pred hhCCC-------CeEeEeeCCCCCC--------chhhcCCccEEEEcCCC------HHHH--------HHHHHHHHhccC
Q 020565 99 DFNPM-------VRVSVEKGDLSSL--------DGEFYDKFDVVVVSCCS------VTTK--------KLINEKCRKLSK 149 (324)
Q Consensus 99 ~lnp~-------v~v~~~~~~~~~~--------~~~~~~~~diVi~~~~~------~~~~--------~~l~~~~~~~~~ 149 (324)
+.+|. -++..+..++.+. ...+.++.|+||-+... ++.. ..+-++|++.+.
T Consensus 180 ~~~g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~ 259 (605)
T PLN02503 180 ETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKK 259 (605)
T ss_pred HhcCccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55552 3566666666542 12334679999976532 2221 334566766222
Q ss_pred CccEEEeeecCceE
Q 020565 150 RVAFYTVDCRDSCG 163 (324)
Q Consensus 150 ~ip~i~~~~~G~~g 163 (324)
-..|+++++...+|
T Consensus 260 lk~fV~vSTayVyG 273 (605)
T PLN02503 260 LKLFLQVSTAYVNG 273 (605)
T ss_pred CCeEEEccCceeec
Confidence 24578777654444
No 485
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.64 E-value=5.2 Score=35.00 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=56.1
Q ss_pred EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565 34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (324)
Q Consensus 34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~ 112 (324)
|+|+|+ |.+|..++..|...|.. ++.+=. . . .....+.++.. .+.+ ...+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R---------------~------~---~~~~~~~l~~~--g~~v--v~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALVR---------------D------P---SSDRAQQLQAL--GAEV--VEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEES---------------S------S---HHHHHHHHHHT--TTEE--EES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEEe---------------c------c---chhhhhhhhcc--cceE--eecc
Confidence 789996 88999999999997765 444211 0 1 11123334443 3333 2334
Q ss_pred CCC--CchhhcCCccEEEEcCCC-----HHHHHHHHHHHHhccCCccEEEe
Q 020565 113 LSS--LDGEFYDKFDVVVVSCCS-----VTTKKLINEKCRKLSKRVAFYTV 156 (324)
Q Consensus 113 ~~~--~~~~~~~~~diVi~~~~~-----~~~~~~l~~~~~~~~~~ip~i~~ 156 (324)
+.+ .....++++|.|+.++.. .+....+-+.|.+ .++..+.-
T Consensus 52 ~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~--agVk~~v~ 100 (233)
T PF05368_consen 52 YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA--AGVKHFVP 100 (233)
T ss_dssp TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH--HT-SEEEE
T ss_pred cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc--cccceEEE
Confidence 433 345678999999988872 3345567788888 67766543
No 486
>PRK08324 short chain dehydrogenase; Validated
Probab=88.62 E-value=2.9 Score=43.32 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=28.3
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~ 63 (324)
...+|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 4468999994 9999999999999998 5888775
No 487
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=88.62 E-value=0.51 Score=45.32 Aligned_cols=33 Identities=3% Similarity=0.118 Sum_probs=30.2
Q ss_pred cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
...|+|||+|..|..+|-.|++.|+. ++++|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 46899999999999999999999997 8999974
No 488
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=88.61 E-value=3.6 Score=37.16 Aligned_cols=93 Identities=14% Similarity=0.243 Sum_probs=55.9
Q ss_pred CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (324)
Q Consensus 32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~ 111 (324)
.+|+|+|+.+-|..+++.|...|..-+..+=.+ -....+ .+. +... +...
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~------~~~~~~---------------------~~~-g~~~--v~~g 50 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS------EGKHLY---------------------PIH-QALT--VHTG 50 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC------Cccccc---------------------ccc-CCce--EEEC
Confidence 379999998889999999999996533222111 011000 000 0111 1222
Q ss_pred CCCC-Cchhhc--CCccEEEEcCCCHHHH--HHHHHHHHhccCCccEEEe
Q 020565 112 DLSS-LDGEFY--DKFDVVVVSCCSVTTK--KLINEKCRKLSKRVAFYTV 156 (324)
Q Consensus 112 ~~~~-~~~~~~--~~~diVi~~~~~~~~~--~~l~~~~~~~~~~ip~i~~ 156 (324)
.++. ...+++ .+.|+||+++.+++.. ..+.+.|++ .++|++--
T Consensus 51 ~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~--~~ipylR~ 98 (256)
T TIGR00715 51 ALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKE--LGIPYVRF 98 (256)
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHH--hCCcEEEE
Confidence 2222 122333 3588999999998854 568889999 99999855
No 489
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.57 E-value=2.5 Score=39.83 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=51.8
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEE--EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLT--LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~--lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
.+|+|+|+ |-+|.|+++.|...+...+. .+-. .+.. |+.- . .. ......
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s---------------~~~a---G~~l--------~-~~-~~~l~~ 56 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS---------------SESA---GHSV--------P-FA-GKNLRV 56 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC---------------cccC---CCee--------c-cC-CcceEE
Confidence 57999997 77999999999976554333 3322 2223 5431 1 11 112222
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~ 157 (324)
. +.....++++|+|+.+..+.... .+-..+.+ .++.+|+.+
T Consensus 57 ~-----~~~~~~~~~vD~vFla~p~~~s~-~~v~~~~~--~G~~VIDlS 97 (336)
T PRK05671 57 R-----EVDSFDFSQVQLAFFAAGAAVSR-SFAEKARA--AGCSVIDLS 97 (336)
T ss_pred e-----eCChHHhcCCCEEEEcCCHHHHH-HHHHHHHH--CCCeEEECc
Confidence 1 11112257899999999764444 45555566 677777554
No 490
>PRK12743 oxidoreductase; Provisional
Probab=88.56 E-value=1.7 Score=38.58 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=24.8
Q ss_pred cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM 61 (324)
Q Consensus 31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv 61 (324)
.++|+|.|+ |++|.++++.|+..|.. +.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~ 32 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGIT 32 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 457999996 68999999999999985 5454
No 491
>PLN02823 spermine synthase
Probab=88.54 E-value=1.4 Score=41.48 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=34.2
Q ss_pred CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
.++.+.-.|.+-+.....-.. -.-.+|||+|.|+ |+.....|...++.++++||-|.
T Consensus 81 s~~~de~~YhE~l~h~~l~~~--~~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~ 137 (336)
T PLN02823 81 SAEADEFVYHESLVHPALLHH--PNPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQ 137 (336)
T ss_pred cccchHHHHHHHHHhHHHhhC--CCCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCH
Confidence 344444567775544433322 2456899999983 44443444446788999987643
No 492
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=88.52 E-value=14 Score=32.95 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=52.8
Q ss_pred HHHHHHhHHHHHh--hhHHHH---------HHH-hcCcEEEEcCchhHHHHHHHHHH---hCCCcEEEEcCCccccccCC
Q 020565 8 EQETALYDRQIRV--WGADAQ---------RRL-SKSHILVCGMKGTVAEFCKNIVL---AGVGSLTLMDDRVVTEEAWS 72 (324)
Q Consensus 8 ~~e~~ry~Rqi~l--~g~~~q---------~~l-~~~~VliiG~g~lGsei~k~L~~---~Gv~~i~lvD~d~v~~~nl~ 72 (324)
+.-.+.||.+++- -|-+.. ..+ ...+|+-+||| .|..... |++ ..-.+++.+|.
T Consensus 22 ~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcG-tG~~~~~-l~~~~~~~~~~v~gvD~--------- 90 (247)
T PRK15451 22 ERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCS-LGAATLS-VRRNIHHDNCKIIAIDN--------- 90 (247)
T ss_pred hHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCCCCCEEEEEccc-CCHHHHH-HHHhcCCCCCeEEEEeC---------
Confidence 3335578877762 232221 112 45789999998 4665544 333 12246888886
Q ss_pred CCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEc
Q 020565 73 ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVS 130 (324)
Q Consensus 73 r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~ 130 (324)
...-.+.+.+++.+.....+++....++.+.. +.++|+|+..
T Consensus 91 -------------S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~vv~~ 132 (247)
T PRK15451 91 -------------SPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IENASMVVLN 132 (247)
T ss_pred -------------CHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CCCCCEEehh
Confidence 33334555666665443335555555544321 3468888765
No 493
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.52 E-value=1.2 Score=39.38 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=27.1
Q ss_pred CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57899997 6799999999999998 58887653
No 494
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=88.49 E-value=2.2 Score=40.93 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=56.8
Q ss_pred hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (324)
Q Consensus 30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~ 108 (324)
+..+|.|+|+ |.+|.++++.|..-...+++.+-.+ ... |+. +...+|.+....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~sa---G~~--------i~~~~~~l~~~~ 90 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKA---GQS--------FGSVFPHLITQD 90 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhc---CCC--------chhhCccccCcc
Confidence 4558999998 6799999999998866667776431 111 321 122223221100
Q ss_pred eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (324)
Q Consensus 109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~ 158 (324)
.....+.....+++.|+||.|..+......+..+ + .+.++|+.++
T Consensus 91 -~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~--~g~~VIDlSs 135 (381)
T PLN02968 91 -LPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKAL--P--KDLKIVDLSA 135 (381)
T ss_pred -ccceecCCHHHhcCCCEEEEcCCHHHHHHHHHHH--h--CCCEEEEcCc
Confidence 0011122223357899999999886666666553 3 4566666553
No 495
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=88.45 E-value=3.9 Score=37.90 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=24.5
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD 63 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~ 63 (324)
+|+|.|+ |.+|+.+++.|...|. .+++.+..
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 5899996 8899999999999984 34665543
No 496
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=88.43 E-value=2.3 Score=37.90 Aligned_cols=34 Identities=12% Similarity=0.333 Sum_probs=28.5
Q ss_pred HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM 61 (324)
Q Consensus 27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv 61 (324)
..|++++++|.|+ +|+|.++++.|+..|.. ++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 3477889999996 78999999999999986 6554
No 497
>PRK08264 short chain dehydrogenase; Validated
Probab=88.43 E-value=0.64 Score=40.71 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=31.8
Q ss_pred HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
+++++|+|.|+ |++|.++++.|+..|..++.+++.+.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 56789999995 88999999999999996788887643
No 498
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=88.41 E-value=2 Score=42.18 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=67.4
Q ss_pred HHHhHHHHHhhhHHHHHH----------HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCC
Q 020565 11 TALYDRQIRVWGADAQRR----------LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD 80 (324)
Q Consensus 11 ~~ry~Rqi~l~g~~~q~~----------l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~ 80 (324)
...|+.-.+..|..+.+. ....+|.|||.|+-|-..+.-|+++|+. +|+.+.. .-...=..|.--
T Consensus 93 ~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~----~~~GGll~yGIP 167 (457)
T COG0493 93 PVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHD-VTVFERV----ALDGGLLLYGIP 167 (457)
T ss_pred chhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCe-EEEeCCc----CCCceeEEecCc
Confidence 345555556655555433 3457899999999999999999999997 8887661 112211222211
Q ss_pred CcccCCccHHHHHHHHHHhhCCCCeEeEeeCCC-CCCchhhcCCccEEEEcCC
Q 020565 81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL-SSLDGEFYDKFDVVVVSCC 132 (324)
Q Consensus 81 di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~-~~~~~~~~~~~diVi~~~~ 132 (324)
+. ...+.-++-..+.|.+++ +++.....-= +-..+++.+.||.|+.++.
T Consensus 168 ~~-kl~k~i~d~~i~~l~~~G--v~~~~~~~vG~~it~~~L~~e~Dav~l~~G 217 (457)
T COG0493 168 DF-KLPKDILDRRLELLERSG--VEFKLNVRVGRDITLEELLKEYDAVFLATG 217 (457)
T ss_pred hh-hccchHHHHHHHHHHHcC--eEEEEcceECCcCCHHHHHHhhCEEEEecc
Confidence 11 013334445555666666 5554322211 1234666788999998875
No 499
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=88.29 E-value=3 Score=38.18 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=26.5
Q ss_pred cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (324)
Q Consensus 33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d 64 (324)
+|+|.|. |.+|+.+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6899995 8899999999999996 57777763
No 500
>PRK07236 hypothetical protein; Provisional
Probab=88.28 E-value=0.59 Score=44.56 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=32.0
Q ss_pred HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (324)
Q Consensus 29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~ 65 (324)
++..+|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4567899999999999999999999996 89998754
Done!